Query 038919
Match_columns 483
No_of_seqs 417 out of 2941
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 07:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.2E-42 2.5E-46 354.6 21.4 301 146-459 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-38 8.3E-43 360.0 23.1 303 143-458 124-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 6.5E-38 2.2E-42 329.2 24.5 326 143-482 124-495 (591)
4 1vt4_I APAF-1 related killer D 100.0 7.2E-38 2.5E-42 330.1 17.5 303 146-481 131-461 (1221)
5 3jrn_A AT1G72930 protein; TIR 100.0 3E-38 1E-42 270.1 10.9 140 1-146 23-163 (176)
6 3ozi_A L6TR; plant TIR domain, 100.0 6.7E-37 2.3E-41 265.5 11.4 141 1-145 50-192 (204)
7 3h16_A TIR protein; bacteria T 99.9 1.8E-24 6E-29 184.7 3.5 101 1-101 34-135 (154)
8 2qen_A Walker-type ATPase; unk 99.8 1.3E-18 4.4E-23 170.0 25.7 287 143-452 12-349 (350)
9 2fna_A Conserved hypothetical 99.8 7.1E-19 2.4E-23 172.3 19.1 283 143-451 13-356 (357)
10 3ub2_A TOLL/interleukin-1 rece 99.8 3.7E-20 1.2E-24 155.4 2.5 115 2-119 24-145 (146)
11 1w5s_A Origin recognition comp 99.8 1.4E-17 4.8E-22 166.5 21.1 295 143-447 22-387 (412)
12 2qby_B CDC6 homolog 3, cell di 99.7 5.5E-15 1.9E-19 146.2 25.7 280 143-436 20-339 (384)
13 2qby_A CDC6 homolog 1, cell di 99.7 2E-15 6.7E-20 149.4 19.3 283 143-436 20-348 (386)
14 1fnn_A CDC6P, cell division co 99.7 8.3E-15 2.8E-19 145.1 21.4 305 143-458 17-387 (389)
15 2js7_A Myeloid differentiation 99.6 5.1E-17 1.7E-21 138.6 3.6 84 1-84 29-117 (160)
16 1t3g_A X-linked interleukin-1 99.6 2.1E-16 7.2E-21 134.6 4.4 84 1-84 26-114 (159)
17 2v1u_A Cell division control p 99.6 4.1E-14 1.4E-18 139.9 21.6 282 143-436 19-351 (387)
18 1fyx_A TOLL-like receptor 2; b 99.6 3.5E-17 1.2E-21 138.1 -0.7 82 1-82 18-104 (149)
19 2j67_A TOLL like receptor 10; 99.6 9.8E-17 3.4E-21 138.9 1.1 84 1-84 48-136 (178)
20 1njg_A DNA polymerase III subu 99.4 3.1E-12 1E-16 117.6 17.8 196 143-352 23-231 (250)
21 2chg_A Replication factor C sm 99.4 9.8E-12 3.3E-16 112.6 16.4 184 143-350 17-205 (226)
22 1sxj_B Activator 1 37 kDa subu 99.3 6.4E-11 2.2E-15 113.9 17.1 184 143-350 21-211 (323)
23 1iqp_A RFCS; clamp loader, ext 99.2 4.8E-10 1.6E-14 107.9 15.7 185 143-351 25-214 (327)
24 1hqc_A RUVB; extended AAA-ATPa 99.2 2.1E-09 7.3E-14 103.3 19.8 254 143-441 12-303 (324)
25 2chq_A Replication factor C sm 99.1 3.9E-09 1.3E-13 101.1 18.2 184 142-349 16-204 (319)
26 1jr3_A DNA polymerase III subu 99.0 6.2E-09 2.1E-13 102.1 16.8 194 143-350 16-222 (373)
27 3te6_A Regulatory protein SIR3 99.0 5.2E-09 1.8E-13 99.0 15.3 170 143-318 20-212 (318)
28 3pfi_A Holliday junction ATP-d 99.0 1E-08 3.5E-13 99.1 17.6 256 143-444 29-321 (338)
29 3j0a_A TOLL-like receptor 5; m 98.9 4.7E-10 1.6E-14 122.1 5.7 84 2-85 684-775 (844)
30 1jbk_A CLPB protein; beta barr 98.9 1.1E-08 3.9E-13 89.8 11.5 48 143-192 22-69 (195)
31 3h4m_A Proteasome-activating n 98.9 3.7E-08 1.3E-12 92.7 15.7 178 143-348 17-230 (285)
32 3uk6_A RUVB-like 2; hexameric 98.9 8.9E-08 3E-12 93.6 18.5 203 143-350 44-304 (368)
33 3bos_A Putative DNA replicatio 98.8 9.6E-09 3.3E-13 94.0 8.7 171 143-350 28-218 (242)
34 1sxj_A Activator 1 95 kDa subu 98.8 1.3E-07 4.6E-12 96.6 18.1 186 143-347 39-250 (516)
35 1sxj_D Activator 1 41 kDa subu 98.8 9.8E-08 3.3E-12 92.7 15.0 192 143-348 37-234 (353)
36 1d2n_A N-ethylmaleimide-sensit 98.8 4E-07 1.4E-11 85.0 18.5 147 164-340 62-228 (272)
37 2qz4_A Paraplegin; AAA+, SPG7, 98.7 5.1E-07 1.7E-11 83.6 18.5 183 143-350 6-223 (262)
38 1sxj_E Activator 1 40 kDa subu 98.7 1.1E-07 3.7E-12 92.5 14.0 196 143-349 14-237 (354)
39 3d8b_A Fidgetin-like protein 1 98.7 6.8E-07 2.3E-11 86.9 19.0 182 143-351 84-297 (357)
40 2z4s_A Chromosomal replication 98.7 1.2E-07 4E-12 94.9 13.7 183 143-348 105-305 (440)
41 3syl_A Protein CBBX; photosynt 98.7 1.3E-07 4.4E-12 90.1 12.8 151 144-319 32-219 (309)
42 3eie_A Vacuolar protein sortin 98.7 6.9E-07 2.4E-11 85.6 17.9 182 143-351 18-230 (322)
43 3pvs_A Replication-associated 98.7 1.6E-07 5.6E-12 93.7 12.9 175 143-348 26-214 (447)
44 2qp9_X Vacuolar protein sortin 98.7 1.4E-06 4.9E-11 84.4 19.2 179 143-350 51-262 (355)
45 1xwi_A SKD1 protein; VPS4B, AA 98.6 2.7E-06 9.1E-11 81.3 20.5 183 143-351 12-225 (322)
46 1l8q_A Chromosomal replication 98.6 8.9E-07 3E-11 84.9 15.7 168 153-346 24-205 (324)
47 1a5t_A Delta prime, HOLB; zinc 98.6 2E-06 7E-11 82.7 17.7 180 150-348 9-204 (334)
48 3vfd_A Spastin; ATPase, microt 98.6 2.7E-06 9.1E-11 83.7 18.8 182 143-350 115-327 (389)
49 2zan_A Vacuolar protein sortin 98.6 3.8E-06 1.3E-10 84.0 19.5 183 143-350 134-346 (444)
50 2p65_A Hypothetical protein PF 98.5 1.9E-07 6.7E-12 81.4 8.9 48 143-192 22-69 (187)
51 3b9p_A CG5977-PA, isoform A; A 98.5 4.4E-06 1.5E-10 78.9 18.2 179 143-350 21-234 (297)
52 3u61_B DNA polymerase accessor 98.5 7E-07 2.4E-11 85.6 12.7 176 143-346 26-213 (324)
53 3cf0_A Transitional endoplasmi 98.5 6.7E-06 2.3E-10 77.8 18.8 175 143-344 15-223 (301)
54 1in4_A RUVB, holliday junction 98.5 1.7E-05 5.7E-10 76.2 21.8 257 143-445 25-319 (334)
55 4b4t_J 26S protease regulatory 98.5 6.7E-06 2.3E-10 79.8 18.8 172 143-342 148-354 (405)
56 1sxj_C Activator 1 40 kDa subu 98.5 1.2E-05 4E-10 77.6 19.8 180 143-346 25-209 (340)
57 3pxg_A Negative regulator of g 98.5 1.1E-06 3.7E-11 88.6 12.7 146 143-317 180-338 (468)
58 4b4t_L 26S protease subunit RP 98.4 1.1E-05 3.6E-10 79.6 17.5 172 143-342 181-387 (437)
59 4b4t_H 26S protease regulatory 98.4 1.5E-05 5.2E-10 78.3 18.3 172 143-342 209-415 (467)
60 1qvr_A CLPB protein; coiled co 98.4 1.3E-06 4.4E-11 94.8 11.8 149 143-317 170-345 (854)
61 3hu3_A Transitional endoplasmi 98.4 5.7E-06 2E-10 83.4 15.3 180 143-349 204-415 (489)
62 3n70_A Transport activator; si 98.4 3.6E-07 1.2E-11 76.5 5.4 47 144-190 2-48 (145)
63 1lv7_A FTSH; alpha/beta domain 98.3 1.1E-05 3.6E-10 74.5 15.4 179 143-348 12-224 (257)
64 4b4t_K 26S protease regulatory 98.3 1.1E-05 3.9E-10 79.3 16.3 171 143-341 172-378 (428)
65 4b4t_M 26S protease regulatory 98.3 1.2E-05 4.1E-10 79.2 16.4 170 143-341 181-386 (434)
66 1ofh_A ATP-dependent HSL prote 98.3 1.2E-05 4.2E-10 76.1 15.5 49 143-191 15-75 (310)
67 1r6b_X CLPA protein; AAA+, N-t 98.3 8.3E-06 2.8E-10 87.5 14.9 152 143-317 186-362 (758)
68 4b4t_I 26S protease regulatory 98.2 2.8E-05 9.5E-10 75.8 16.3 171 143-341 182-387 (437)
69 2ce7_A Cell division protein F 98.2 2.9E-05 9.8E-10 77.7 16.6 173 143-342 16-221 (476)
70 4fcw_A Chaperone protein CLPB; 98.2 2E-05 6.8E-10 74.8 13.5 51 143-193 17-74 (311)
71 3ec2_A DNA replication protein 98.2 5.7E-06 2E-10 71.8 8.8 44 148-191 19-63 (180)
72 3pxi_A Negative regulator of g 98.2 9.3E-06 3.2E-10 87.0 12.2 146 143-317 180-338 (758)
73 2gno_A DNA polymerase III, gam 98.2 1.2E-05 4E-10 76.0 11.5 146 147-317 1-152 (305)
74 2c9o_A RUVB-like 1; hexameric 98.1 5.7E-05 1.9E-09 75.8 15.4 49 143-191 37-88 (456)
75 2bjv_A PSP operon transcriptio 98.0 1.5E-05 5E-10 73.9 9.4 49 143-191 6-54 (265)
76 2r62_A Cell division protease 98.0 2.1E-06 7E-11 79.9 3.3 152 143-318 11-197 (268)
77 1ojl_A Transcriptional regulat 98.0 2.8E-05 9.5E-10 73.6 11.0 47 144-190 3-49 (304)
78 3co5_A Putative two-component 98.0 1.4E-06 4.6E-11 72.8 1.3 48 144-191 5-52 (143)
79 3cf2_A TER ATPase, transitiona 97.9 5.6E-05 1.9E-09 80.1 12.7 172 143-342 204-407 (806)
80 3pxi_A Negative regulator of g 97.9 3.8E-05 1.3E-09 82.3 10.9 148 143-317 491-675 (758)
81 3t15_A Ribulose bisphosphate c 97.9 6.9E-05 2.4E-09 70.4 10.9 29 165-193 35-63 (293)
82 2kjq_A DNAA-related protein; s 97.9 1.8E-05 6E-10 66.4 5.9 27 166-192 36-62 (149)
83 1ixz_A ATP-dependent metallopr 97.8 0.00031 1.1E-08 64.4 14.1 172 143-342 16-221 (254)
84 2w58_A DNAI, primosome compone 97.8 0.00012 4E-09 64.7 10.5 50 151-200 37-88 (202)
85 1iy2_A ATP-dependent metallopr 97.7 0.001 3.6E-08 61.8 16.6 172 143-342 40-245 (278)
86 1r6b_X CLPA protein; AAA+, N-t 97.7 0.0001 3.4E-09 79.1 10.3 48 143-190 458-512 (758)
87 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00027 9.3E-09 71.1 12.6 169 143-342 31-236 (499)
88 2x8a_A Nuclear valosin-contain 97.7 0.0018 6.1E-08 60.0 17.4 124 169-317 47-191 (274)
89 1um8_A ATP-dependent CLP prote 97.7 0.00022 7.5E-09 69.6 11.6 26 166-191 72-97 (376)
90 3m6a_A ATP-dependent protease 97.6 0.00047 1.6E-08 70.6 12.6 52 142-193 80-135 (543)
91 1ypw_A Transitional endoplasmi 97.6 0.00045 1.5E-08 74.1 12.5 151 143-319 204-387 (806)
92 1qvr_A CLPB protein; coiled co 97.4 0.0012 4.2E-08 71.5 13.2 50 143-192 558-614 (854)
93 2cvh_A DNA repair and recombin 97.3 0.0013 4.4E-08 58.5 10.0 34 155-188 9-42 (220)
94 3hr8_A Protein RECA; alpha and 97.2 0.00092 3.1E-08 64.1 8.9 101 153-259 47-149 (356)
95 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00069 2.4E-08 63.5 7.5 71 166-260 123-193 (331)
96 3cf2_A TER ATPase, transitiona 97.1 0.00072 2.5E-08 71.7 8.0 152 143-319 477-663 (806)
97 3jvv_A Twitching mobility prot 97.1 0.0012 4.2E-08 63.4 8.0 110 167-290 124-234 (356)
98 4a74_A DNA repair and recombin 97.0 0.001 3.5E-08 59.7 7.0 27 165-191 24-50 (231)
99 2b8t_A Thymidine kinase; deoxy 97.0 0.0027 9.4E-08 56.6 9.1 35 166-200 12-46 (223)
100 3io5_A Recombination and repai 97.0 0.0015 5.1E-08 61.0 7.5 34 168-201 30-65 (333)
101 1g5t_A COB(I)alamin adenosyltr 97.0 0.0014 4.9E-08 56.7 6.8 116 167-287 29-163 (196)
102 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0013 4.4E-08 59.1 6.9 27 166-192 23-49 (235)
103 1n0w_A DNA repair protein RAD5 97.0 0.001 3.6E-08 60.2 6.3 37 154-190 12-48 (243)
104 2eyu_A Twitching motility prot 96.9 0.0028 9.5E-08 58.2 8.8 111 166-289 25-135 (261)
105 3lw7_A Adenylate kinase relate 96.8 0.0094 3.2E-07 50.6 11.0 20 167-186 2-21 (179)
106 2zr9_A Protein RECA, recombina 96.8 0.0024 8.1E-08 61.3 7.7 48 154-201 48-96 (349)
107 1v5w_A DMC1, meiotic recombina 96.8 0.0072 2.5E-07 57.9 11.1 38 154-191 110-147 (343)
108 1rz3_A Hypothetical protein rb 96.8 0.0026 8.9E-08 55.9 7.0 45 148-192 3-48 (201)
109 1u94_A RECA protein, recombina 96.7 0.0031 1.1E-07 60.6 8.0 48 154-201 50-98 (356)
110 3bh0_A DNAB-like replicative h 96.7 0.017 5.8E-07 54.5 13.0 37 165-201 67-103 (315)
111 1jr3_D DNA polymerase III, del 96.7 0.049 1.7E-06 52.0 16.4 156 165-348 17-184 (343)
112 3c8u_A Fructokinase; YP_612366 96.7 0.002 6.7E-08 57.0 5.9 42 151-192 7-48 (208)
113 3hws_A ATP-dependent CLP prote 96.7 0.0015 5E-08 63.4 5.3 49 143-191 15-76 (363)
114 2z43_A DNA repair and recombin 96.7 0.0026 8.9E-08 60.5 6.9 38 154-191 95-132 (324)
115 1xp8_A RECA protein, recombina 96.7 0.0036 1.2E-07 60.4 7.9 95 153-258 60-161 (366)
116 1qhx_A CPT, protein (chloramph 96.6 0.00095 3.2E-08 57.3 3.2 25 167-191 4-28 (178)
117 2r44_A Uncharacterized protein 96.6 0.0013 4.4E-08 62.8 4.3 47 143-193 27-73 (331)
118 2ewv_A Twitching motility prot 96.5 0.0064 2.2E-07 58.9 8.6 111 165-288 135-245 (372)
119 3umf_A Adenylate kinase; rossm 96.5 0.0074 2.5E-07 53.5 8.2 27 164-190 27-53 (217)
120 1sky_E F1-ATPase, F1-ATP synth 96.5 0.011 3.7E-07 58.4 10.0 35 167-201 152-186 (473)
121 3sr0_A Adenylate kinase; phosp 96.5 0.0065 2.2E-07 53.5 7.5 87 168-267 2-93 (206)
122 1ypw_A Transitional endoplasmi 96.4 0.0013 4.4E-08 70.6 3.3 151 143-318 477-662 (806)
123 3kb2_A SPBC2 prophage-derived 96.4 0.0017 5.7E-08 55.3 3.5 25 167-191 2-26 (173)
124 1odf_A YGR205W, hypothetical 3 96.4 0.004 1.4E-07 58.0 6.3 31 162-192 27-57 (290)
125 1vma_A Cell division protein F 96.4 0.026 8.8E-07 52.9 11.4 36 165-201 103-138 (306)
126 3tlx_A Adenylate kinase 2; str 96.3 0.0035 1.2E-07 56.9 5.2 40 151-190 14-53 (243)
127 2qgz_A Helicase loader, putati 96.3 0.0058 2E-07 57.6 6.8 52 149-200 134-187 (308)
128 3trf_A Shikimate kinase, SK; a 96.3 0.0022 7.4E-08 55.4 3.5 26 166-191 5-30 (185)
129 2q6t_A DNAB replication FORK h 96.3 0.03 1E-06 55.7 12.2 65 153-225 188-253 (444)
130 2i1q_A DNA repair and recombin 96.3 0.0062 2.1E-07 57.8 7.0 38 153-190 85-122 (322)
131 1pzn_A RAD51, DNA repair and r 96.3 0.0076 2.6E-07 57.8 7.6 38 154-191 119-156 (349)
132 3vaa_A Shikimate kinase, SK; s 96.3 0.0025 8.5E-08 55.9 3.7 26 166-191 25-50 (199)
133 2pze_A Cystic fibrosis transme 96.2 0.063 2.2E-06 48.0 12.9 26 166-191 34-59 (229)
134 3ice_A Transcription terminati 96.2 0.0059 2E-07 58.5 6.3 29 166-194 174-202 (422)
135 3uie_A Adenylyl-sulfate kinase 96.2 0.005 1.7E-07 54.0 5.4 27 165-191 24-50 (200)
136 1zu4_A FTSY; GTPase, signal re 96.2 0.043 1.5E-06 51.8 12.2 36 165-201 104-139 (320)
137 1ly1_A Polynucleotide kinase; 96.2 0.0027 9.4E-08 54.4 3.6 22 167-188 3-24 (181)
138 2cbz_A Multidrug resistance-as 96.2 0.02 6.8E-07 51.6 9.4 26 166-191 31-56 (237)
139 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0024 8.2E-08 64.3 3.5 45 143-191 22-66 (500)
140 4a1f_A DNAB helicase, replicat 96.2 0.031 1.1E-06 53.0 11.0 35 166-200 46-80 (338)
141 1nks_A Adenylate kinase; therm 96.2 0.0044 1.5E-07 53.7 4.8 26 167-192 2-27 (194)
142 1ex7_A Guanylate kinase; subst 96.2 0.002 6.9E-08 55.7 2.4 28 167-194 2-29 (186)
143 1zuh_A Shikimate kinase; alpha 96.2 0.0032 1.1E-07 53.4 3.6 26 166-191 7-32 (168)
144 2rhm_A Putative kinase; P-loop 96.1 0.0039 1.3E-07 54.1 4.2 25 166-190 5-29 (193)
145 3tqc_A Pantothenate kinase; bi 96.1 0.0099 3.4E-07 56.1 7.2 51 142-192 66-118 (321)
146 1g8p_A Magnesium-chelatase 38 96.1 0.0029 9.9E-08 60.7 3.7 47 143-191 24-70 (350)
147 2px0_A Flagellar biosynthesis 96.1 0.018 6.3E-07 53.7 8.9 28 165-192 104-131 (296)
148 1tue_A Replication protein E1; 96.1 0.0051 1.7E-07 53.6 4.4 41 150-191 43-83 (212)
149 1zp6_A Hypothetical protein AT 96.0 0.0036 1.2E-07 54.3 3.4 24 166-189 9-32 (191)
150 2yvu_A Probable adenylyl-sulfa 96.0 0.0071 2.4E-07 52.2 5.3 29 165-193 12-40 (186)
151 1kag_A SKI, shikimate kinase I 96.0 0.0029 9.9E-08 53.9 2.7 25 167-191 5-29 (173)
152 3iij_A Coilin-interacting nucl 96.0 0.0031 1E-07 54.2 2.9 25 166-190 11-35 (180)
153 1kht_A Adenylate kinase; phosp 96.0 0.004 1.4E-07 53.9 3.6 26 167-192 4-29 (192)
154 1knq_A Gluconate kinase; ALFA/ 96.0 0.0057 2E-07 52.2 4.5 25 166-190 8-32 (175)
155 1xjc_A MOBB protein homolog; s 96.0 0.0068 2.3E-07 51.4 4.8 36 165-200 3-39 (169)
156 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0068 2.3E-07 57.6 5.3 48 147-194 3-52 (359)
157 1gvn_B Zeta; postsegregational 96.0 0.0074 2.5E-07 56.2 5.5 26 165-190 32-57 (287)
158 1kgd_A CASK, peripheral plasma 96.0 0.0042 1.4E-07 53.4 3.5 26 166-191 5-30 (180)
159 2ze6_A Isopentenyl transferase 96.0 0.0045 1.5E-07 56.6 3.8 25 167-191 2-26 (253)
160 3tau_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 55.0 3.4 28 165-192 7-34 (208)
161 3t61_A Gluconokinase; PSI-biol 95.9 0.0037 1.3E-07 54.9 3.0 25 166-190 18-42 (202)
162 4eun_A Thermoresistant glucoki 95.9 0.0046 1.6E-07 54.2 3.6 25 166-190 29-53 (200)
163 1tev_A UMP-CMP kinase; ploop, 95.9 0.005 1.7E-07 53.4 3.9 25 166-190 3-27 (196)
164 1uj2_A Uridine-cytidine kinase 95.9 0.0048 1.6E-07 56.3 3.9 28 164-191 20-47 (252)
165 2iyv_A Shikimate kinase, SK; t 95.9 0.0036 1.2E-07 54.0 2.8 25 167-191 3-27 (184)
166 1j8m_F SRP54, signal recogniti 95.9 0.11 3.6E-06 48.5 13.0 28 166-193 98-125 (297)
167 3a00_A Guanylate kinase, GMP k 95.9 0.0037 1.3E-07 54.1 2.8 28 167-194 2-29 (186)
168 1via_A Shikimate kinase; struc 95.9 0.0044 1.5E-07 53.0 3.2 24 168-191 6-29 (175)
169 3cm0_A Adenylate kinase; ATP-b 95.9 0.0057 2E-07 52.7 4.0 25 166-190 4-28 (186)
170 3dm5_A SRP54, signal recogniti 95.9 0.098 3.3E-06 51.4 13.1 29 165-193 99-127 (443)
171 1ukz_A Uridylate kinase; trans 95.9 0.0056 1.9E-07 53.6 3.9 26 165-190 14-39 (203)
172 2vli_A Antibiotic resistance p 95.8 0.0038 1.3E-07 53.7 2.8 26 166-191 5-30 (183)
173 1y63_A LMAJ004144AAA protein; 95.8 0.0059 2E-07 52.7 3.9 24 166-189 10-33 (184)
174 2c95_A Adenylate kinase 1; tra 95.8 0.0051 1.7E-07 53.5 3.5 25 166-190 9-33 (196)
175 2plr_A DTMP kinase, probable t 95.8 0.0062 2.1E-07 53.6 4.0 27 167-193 5-31 (213)
176 2r6a_A DNAB helicase, replicat 95.8 0.066 2.3E-06 53.3 12.0 28 165-192 202-229 (454)
177 2jaq_A Deoxyguanosine kinase; 95.8 0.0051 1.8E-07 53.8 3.4 24 168-191 2-25 (205)
178 3bgw_A DNAB-like replicative h 95.8 0.06 2.1E-06 53.3 11.4 47 153-200 185-231 (444)
179 2r2a_A Uncharacterized protein 95.8 0.024 8.1E-07 49.5 7.5 23 167-189 6-28 (199)
180 2qor_A Guanylate kinase; phosp 95.8 0.0042 1.4E-07 54.6 2.7 26 166-191 12-37 (204)
181 3lda_A DNA repair protein RAD5 95.8 0.017 5.8E-07 56.3 7.2 38 152-189 164-201 (400)
182 2bwj_A Adenylate kinase 5; pho 95.8 0.005 1.7E-07 53.7 3.2 25 167-191 13-37 (199)
183 1nn5_A Similar to deoxythymidy 95.8 0.0081 2.8E-07 53.0 4.6 28 166-193 9-36 (215)
184 1q57_A DNA primase/helicase; d 95.8 0.048 1.6E-06 55.1 10.9 37 165-201 241-278 (503)
185 1e6c_A Shikimate kinase; phosp 95.7 0.0046 1.6E-07 52.6 2.8 25 167-191 3-27 (173)
186 3cmu_A Protein RECA, recombina 95.7 0.013 4.5E-07 67.7 7.2 94 155-259 1415-1515(2050)
187 2dr3_A UPF0273 protein PH0284; 95.7 0.0085 2.9E-07 54.1 4.8 36 166-201 23-58 (247)
188 2cdn_A Adenylate kinase; phosp 95.7 0.0072 2.4E-07 52.9 4.1 26 166-191 20-45 (201)
189 1aky_A Adenylate kinase; ATP:A 95.7 0.0061 2.1E-07 54.3 3.7 26 166-191 4-29 (220)
190 3kl4_A SRP54, signal recogniti 95.7 0.048 1.7E-06 53.5 10.3 29 165-193 96-124 (433)
191 2pt5_A Shikimate kinase, SK; a 95.7 0.0068 2.3E-07 51.2 3.7 24 168-191 2-25 (168)
192 1qf9_A UMP/CMP kinase, protein 95.7 0.0079 2.7E-07 52.0 4.2 26 166-191 6-31 (194)
193 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.013 4.3E-07 55.8 5.8 104 167-287 172-275 (330)
194 2bbs_A Cystic fibrosis transme 95.7 0.046 1.6E-06 50.8 9.5 25 166-190 64-88 (290)
195 3tr0_A Guanylate kinase, GMP k 95.7 0.0064 2.2E-07 53.3 3.5 25 166-190 7-31 (205)
196 3k1j_A LON protease, ATP-depen 95.7 0.011 3.9E-07 61.2 5.9 51 139-193 37-87 (604)
197 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0076 2.6E-07 55.3 4.1 26 166-191 4-29 (260)
198 3asz_A Uridine kinase; cytidin 95.6 0.0075 2.6E-07 53.2 3.9 27 165-191 5-31 (211)
199 2bbw_A Adenylate kinase 4, AK4 95.6 0.007 2.4E-07 55.0 3.7 26 166-191 27-52 (246)
200 1cke_A CK, MSSA, protein (cyti 95.6 0.007 2.4E-07 54.0 3.6 25 167-191 6-30 (227)
201 2bdt_A BH3686; alpha-beta prot 95.6 0.0073 2.5E-07 52.3 3.6 22 167-188 3-24 (189)
202 3p32_A Probable GTPase RV1496/ 95.6 0.023 8E-07 54.6 7.5 40 154-193 67-106 (355)
203 2pbr_A DTMP kinase, thymidylat 95.6 0.0074 2.5E-07 52.3 3.6 25 168-192 2-26 (195)
204 2ck3_D ATP synthase subunit be 95.6 0.049 1.7E-06 53.7 9.7 28 166-193 153-180 (482)
205 1uf9_A TT1252 protein; P-loop, 95.6 0.0074 2.5E-07 52.8 3.6 25 165-189 7-31 (203)
206 2wwf_A Thymidilate kinase, put 95.6 0.007 2.4E-07 53.3 3.5 28 166-193 10-37 (212)
207 3e70_C DPA, signal recognition 95.6 0.021 7.2E-07 54.1 6.8 29 165-193 128-156 (328)
208 2j41_A Guanylate kinase; GMP, 95.5 0.0076 2.6E-07 52.9 3.5 25 166-190 6-30 (207)
209 1ye8_A Protein THEP1, hypothet 95.5 0.0084 2.9E-07 51.4 3.6 24 168-191 2-25 (178)
210 3ney_A 55 kDa erythrocyte memb 95.5 0.0078 2.7E-07 52.4 3.4 27 165-191 18-44 (197)
211 3fb4_A Adenylate kinase; psych 95.5 0.0082 2.8E-07 53.2 3.6 23 168-190 2-24 (216)
212 1tf7_A KAIC; homohexamer, hexa 95.5 0.022 7.5E-07 57.9 7.3 39 155-193 270-308 (525)
213 3dzd_A Transcriptional regulat 95.5 0.099 3.4E-06 50.4 11.5 48 144-191 130-177 (368)
214 1fx0_B ATP synthase beta chain 95.5 0.039 1.3E-06 54.6 8.6 40 166-205 165-204 (498)
215 2pez_A Bifunctional 3'-phospho 95.5 0.01 3.5E-07 50.8 4.0 27 166-192 5-31 (179)
216 2z0h_A DTMP kinase, thymidylat 95.4 0.009 3.1E-07 51.9 3.6 25 168-192 2-26 (197)
217 2xxa_A Signal recognition part 95.4 0.2 6.8E-06 49.3 13.6 37 165-201 99-135 (433)
218 2p5t_B PEZT; postsegregational 95.4 0.015 5.1E-07 53.0 5.2 27 165-191 31-57 (253)
219 2if2_A Dephospho-COA kinase; a 95.4 0.0077 2.6E-07 52.8 3.1 21 168-188 3-23 (204)
220 2grj_A Dephospho-COA kinase; T 95.4 0.0095 3.2E-07 51.8 3.5 26 165-190 11-36 (192)
221 2qt1_A Nicotinamide riboside k 95.4 0.009 3.1E-07 52.5 3.4 26 165-190 20-45 (207)
222 3dl0_A Adenylate kinase; phosp 95.4 0.0088 3E-07 53.0 3.3 23 168-190 2-24 (216)
223 4gp7_A Metallophosphoesterase; 95.4 0.0082 2.8E-07 51.1 3.0 22 166-187 9-30 (171)
224 2hf9_A Probable hydrogenase ni 95.4 0.03 1E-06 49.8 6.9 41 151-193 25-65 (226)
225 1g41_A Heat shock protein HSLU 95.3 0.01 3.4E-07 58.5 3.9 51 143-193 15-77 (444)
226 1jjv_A Dephospho-COA kinase; P 95.3 0.009 3.1E-07 52.5 3.3 22 167-188 3-24 (206)
227 1u0j_A DNA replication protein 95.3 0.018 6E-07 52.5 5.2 40 151-190 89-128 (267)
228 3fwy_A Light-independent proto 95.3 0.017 5.8E-07 54.4 5.3 38 165-203 47-84 (314)
229 1rj9_A FTSY, signal recognitio 95.3 0.017 5.9E-07 54.1 5.2 36 165-201 101-136 (304)
230 2wsm_A Hydrogenase expression/ 95.3 0.019 6.5E-07 50.9 5.3 42 150-193 16-57 (221)
231 4e22_A Cytidylate kinase; P-lo 95.3 0.011 3.8E-07 53.8 3.8 26 166-191 27-52 (252)
232 1zd8_A GTP:AMP phosphotransfer 95.3 0.0085 2.9E-07 53.6 2.9 25 166-190 7-31 (227)
233 2v54_A DTMP kinase, thymidylat 95.2 0.0094 3.2E-07 52.2 3.1 25 166-190 4-28 (204)
234 1zak_A Adenylate kinase; ATP:A 95.2 0.0081 2.8E-07 53.5 2.7 26 166-191 5-30 (222)
235 1a7j_A Phosphoribulokinase; tr 95.2 0.0087 3E-07 55.8 3.0 27 165-191 4-30 (290)
236 3l0o_A Transcription terminati 95.2 0.0099 3.4E-07 56.9 3.4 29 165-193 174-202 (427)
237 1m7g_A Adenylylsulfate kinase; 95.2 0.014 4.6E-07 51.6 4.1 26 166-191 25-50 (211)
238 2jeo_A Uridine-cytidine kinase 95.2 0.014 4.7E-07 53.0 4.2 26 165-190 24-49 (245)
239 3b9q_A Chloroplast SRP recepto 95.2 0.034 1.2E-06 52.1 6.9 35 165-200 99-133 (302)
240 1lvg_A Guanylate kinase, GMP k 95.2 0.0097 3.3E-07 52.0 2.9 25 167-191 5-29 (198)
241 3be4_A Adenylate kinase; malar 95.1 0.0096 3.3E-07 52.9 2.8 24 167-190 6-29 (217)
242 1p9r_A General secretion pathw 95.1 0.07 2.4E-06 52.3 9.1 96 153-265 157-252 (418)
243 1ls1_A Signal recognition part 95.1 0.093 3.2E-06 48.9 9.5 36 165-201 97-132 (295)
244 3nwj_A ATSK2; P loop, shikimat 95.0 0.011 3.7E-07 53.7 3.0 25 167-191 49-73 (250)
245 3ake_A Cytidylate kinase; CMP 95.0 0.015 5.1E-07 51.0 3.8 24 168-191 4-27 (208)
246 3aez_A Pantothenate kinase; tr 95.0 0.016 5.5E-07 54.5 4.2 29 164-192 88-116 (312)
247 2ehv_A Hypothetical protein PH 95.0 0.019 6.5E-07 51.9 4.5 24 166-189 30-53 (251)
248 3d3q_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 55.2 3.7 25 167-191 8-32 (340)
249 1htw_A HI0065; nucleotide-bind 95.0 0.026 8.9E-07 47.3 4.9 26 165-190 32-57 (158)
250 1znw_A Guanylate kinase, GMP k 95.0 0.013 4.5E-07 51.5 3.3 26 166-191 20-45 (207)
251 3r20_A Cytidylate kinase; stru 94.9 0.015 5.1E-07 52.1 3.5 26 166-191 9-34 (233)
252 1gtv_A TMK, thymidylate kinase 94.9 0.0087 3E-07 52.8 2.0 25 168-192 2-26 (214)
253 3exa_A TRNA delta(2)-isopenten 94.9 0.015 5.1E-07 54.2 3.6 25 166-190 3-27 (322)
254 2j37_W Signal recognition part 94.9 0.31 1.1E-05 48.8 13.4 29 165-193 100-128 (504)
255 2xb4_A Adenylate kinase; ATP-b 94.9 0.015 5.2E-07 51.8 3.6 23 168-190 2-24 (223)
256 1np6_A Molybdopterin-guanine d 94.9 0.026 8.8E-07 48.1 4.8 27 166-192 6-32 (174)
257 1s96_A Guanylate kinase, GMP k 94.9 0.015 5E-07 51.8 3.4 26 166-191 16-41 (219)
258 1vht_A Dephospho-COA kinase; s 94.9 0.017 6E-07 51.1 3.9 23 166-188 4-26 (218)
259 3foz_A TRNA delta(2)-isopenten 94.9 0.018 6.1E-07 53.6 4.0 26 165-190 9-34 (316)
260 2r8r_A Sensor protein; KDPD, P 94.9 0.035 1.2E-06 49.2 5.6 27 167-193 7-33 (228)
261 2og2_A Putative signal recogni 94.9 0.047 1.6E-06 52.3 7.0 35 165-200 156-190 (359)
262 1e4v_A Adenylate kinase; trans 94.9 0.015 5.1E-07 51.4 3.3 23 168-190 2-24 (214)
263 3a8t_A Adenylate isopentenyltr 94.9 0.014 4.7E-07 55.2 3.2 25 166-190 40-64 (339)
264 2zts_A Putative uncharacterize 94.9 0.013 4.4E-07 53.0 3.0 25 166-190 30-54 (251)
265 2qmh_A HPR kinase/phosphorylas 94.9 0.016 5.5E-07 50.1 3.3 25 166-190 34-58 (205)
266 1ak2_A Adenylate kinase isoenz 94.9 0.017 5.8E-07 51.9 3.7 26 166-191 16-41 (233)
267 1z6g_A Guanylate kinase; struc 94.8 0.013 4.4E-07 52.1 2.8 25 166-190 23-47 (218)
268 3crm_A TRNA delta(2)-isopenten 94.8 0.016 5.3E-07 54.6 3.5 26 166-191 5-30 (323)
269 2f6r_A COA synthase, bifunctio 94.8 0.016 5.4E-07 53.8 3.5 24 165-188 74-97 (281)
270 3cmw_A Protein RECA, recombina 94.8 0.047 1.6E-06 62.3 7.9 96 153-259 369-471 (1706)
271 2orw_A Thymidine kinase; TMTK, 94.8 0.024 8.3E-07 48.8 4.4 27 167-193 4-30 (184)
272 2j9r_A Thymidine kinase; TK1, 94.7 0.12 4.1E-06 45.3 8.5 36 165-200 27-62 (214)
273 3lnc_A Guanylate kinase, GMP k 94.6 0.013 4.6E-07 52.4 2.4 25 166-190 27-52 (231)
274 1svm_A Large T antigen; AAA+ f 94.6 0.035 1.2E-06 53.6 5.3 27 164-190 167-193 (377)
275 1cr0_A DNA primase/helicase; R 94.6 0.031 1E-06 52.2 4.8 28 166-193 35-62 (296)
276 2i3b_A HCR-ntpase, human cance 94.6 0.019 6.4E-07 49.7 3.1 24 168-191 3-26 (189)
277 1yrb_A ATP(GTP)binding protein 94.5 0.041 1.4E-06 50.2 5.5 26 166-191 14-39 (262)
278 1g8f_A Sulfate adenylyltransfe 94.5 0.026 9.1E-07 56.6 4.4 49 144-192 373-421 (511)
279 1sq5_A Pantothenate kinase; P- 94.5 0.026 8.8E-07 53.1 4.1 27 165-191 79-105 (308)
280 3cmu_A Protein RECA, recombina 94.5 0.061 2.1E-06 62.3 7.7 96 152-258 368-470 (2050)
281 1ltq_A Polynucleotide kinase; 94.4 0.023 7.7E-07 53.2 3.6 23 167-189 3-25 (301)
282 4aby_A DNA repair protein RECN 94.4 0.2 6.9E-06 49.0 10.5 21 168-188 62-82 (415)
283 3b85_A Phosphate starvation-in 94.4 0.023 7.8E-07 50.0 3.2 23 167-189 23-45 (208)
284 3zvl_A Bifunctional polynucleo 94.3 0.021 7.1E-07 56.2 3.1 26 165-190 257-282 (416)
285 4eaq_A DTMP kinase, thymidylat 94.3 0.033 1.1E-06 49.9 4.2 28 165-192 25-52 (229)
286 2yhs_A FTSY, cell division pro 94.3 0.042 1.5E-06 54.6 5.2 36 165-201 292-327 (503)
287 3b5x_A Lipid A export ATP-bind 94.2 0.34 1.2E-05 49.8 12.2 25 166-190 369-393 (582)
288 3end_A Light-independent proto 94.2 0.047 1.6E-06 51.2 5.3 38 165-203 40-77 (307)
289 1nlf_A Regulatory protein REPA 94.2 0.042 1.4E-06 50.8 4.9 27 166-192 30-56 (279)
290 1q3t_A Cytidylate kinase; nucl 94.2 0.031 1.1E-06 50.2 3.8 26 165-190 15-40 (236)
291 2f1r_A Molybdopterin-guanine d 94.2 0.014 4.9E-07 49.6 1.4 27 167-193 3-29 (171)
292 3tif_A Uncharacterized ABC tra 94.2 0.023 7.9E-07 51.1 2.9 24 166-189 31-54 (235)
293 3cmw_A Protein RECA, recombina 94.1 0.079 2.7E-06 60.6 7.7 88 165-258 1430-1518(1706)
294 1u0l_A Probable GTPase ENGC; p 94.1 0.27 9.2E-06 45.8 10.2 34 152-190 160-193 (301)
295 2onk_A Molybdate/tungstate ABC 94.1 0.028 9.6E-07 50.7 3.2 24 167-190 25-48 (240)
296 1cp2_A CP2, nitrogenase iron p 93.9 0.055 1.9E-06 49.6 5.0 27 167-193 2-28 (269)
297 2v3c_C SRP54, signal recogniti 93.9 0.032 1.1E-06 55.0 3.6 28 166-193 99-126 (432)
298 2qm8_A GTPase/ATPase; G protei 93.9 0.087 3E-06 50.1 6.5 29 164-192 53-81 (337)
299 3eph_A TRNA isopentenyltransfe 93.9 0.033 1.1E-06 53.9 3.5 25 167-191 3-27 (409)
300 2pcj_A ABC transporter, lipopr 93.9 0.024 8.1E-07 50.6 2.4 24 166-189 30-53 (224)
301 2ocp_A DGK, deoxyguanosine kin 93.9 0.034 1.1E-06 50.2 3.4 26 166-191 2-27 (241)
302 2p67_A LAO/AO transport system 93.9 0.086 2.9E-06 50.3 6.4 29 164-192 54-82 (341)
303 2axn_A 6-phosphofructo-2-kinas 93.8 0.06 2.1E-06 54.5 5.4 30 165-194 34-63 (520)
304 3llm_A ATP-dependent RNA helic 93.8 0.49 1.7E-05 42.1 11.0 21 167-187 77-97 (235)
305 4edh_A DTMP kinase, thymidylat 93.8 0.073 2.5E-06 47.0 5.3 28 166-193 6-33 (213)
306 1puj_A YLQF, conserved hypothe 93.8 0.47 1.6E-05 43.7 11.1 24 165-188 119-142 (282)
307 1b0u_A Histidine permease; ABC 93.8 0.03 1E-06 51.3 2.9 25 166-190 32-56 (262)
308 1mv5_A LMRA, multidrug resista 93.7 0.034 1.2E-06 50.2 3.2 24 166-189 28-51 (243)
309 2qi9_C Vitamin B12 import ATP- 93.7 0.032 1.1E-06 50.6 3.0 27 166-192 26-52 (249)
310 3hjn_A DTMP kinase, thymidylat 93.7 0.23 8E-06 43.0 8.4 33 168-200 2-34 (197)
311 2d2e_A SUFC protein; ABC-ATPas 93.7 0.036 1.2E-06 50.4 3.2 24 166-189 29-52 (250)
312 3gfo_A Cobalt import ATP-bindi 93.7 0.03 1E-06 51.6 2.7 24 166-189 34-57 (275)
313 2zu0_C Probable ATP-dependent 93.7 0.038 1.3E-06 50.7 3.4 24 166-189 46-69 (267)
314 2olj_A Amino acid ABC transpor 93.6 0.033 1.1E-06 51.0 2.9 25 166-190 50-74 (263)
315 2v9p_A Replication protein E1; 93.6 0.059 2E-06 50.3 4.6 26 165-190 125-150 (305)
316 1ji0_A ABC transporter; ATP bi 93.6 0.032 1.1E-06 50.3 2.7 24 166-189 32-55 (240)
317 2afh_E Nitrogenase iron protei 93.6 0.067 2.3E-06 49.6 5.0 36 167-203 3-38 (289)
318 4g1u_C Hemin import ATP-bindin 93.5 0.032 1.1E-06 51.1 2.7 24 166-189 37-60 (266)
319 1g6h_A High-affinity branched- 93.5 0.033 1.1E-06 50.8 2.7 24 166-189 33-56 (257)
320 1vpl_A ABC transporter, ATP-bi 93.5 0.035 1.2E-06 50.5 2.9 24 166-189 41-64 (256)
321 3ld9_A DTMP kinase, thymidylat 93.5 0.14 4.9E-06 45.3 6.7 28 165-192 20-47 (223)
322 1oix_A RAS-related protein RAB 93.5 0.04 1.4E-06 47.6 3.1 24 166-189 29-52 (191)
323 1sgw_A Putative ABC transporte 93.5 0.028 9.7E-07 49.7 2.1 24 167-190 36-59 (214)
324 2ghi_A Transport protein; mult 93.5 0.036 1.2E-06 50.7 2.9 25 166-190 46-70 (260)
325 2ff7_A Alpha-hemolysin translo 93.4 0.035 1.2E-06 50.3 2.7 24 166-189 35-58 (247)
326 3v9p_A DTMP kinase, thymidylat 93.4 0.11 3.7E-06 46.3 5.8 28 166-193 25-52 (227)
327 2dyk_A GTP-binding protein; GT 93.4 0.052 1.8E-06 44.9 3.6 23 167-189 2-24 (161)
328 3tqf_A HPR(Ser) kinase; transf 93.4 0.05 1.7E-06 45.8 3.3 24 166-189 16-39 (181)
329 3cr8_A Sulfate adenylyltranfer 93.4 0.039 1.3E-06 56.1 3.2 28 166-193 369-396 (552)
330 2f9l_A RAB11B, member RAS onco 93.4 0.043 1.5E-06 47.6 3.2 23 167-189 6-28 (199)
331 2ixe_A Antigen peptide transpo 93.4 0.039 1.3E-06 50.8 2.9 24 166-189 45-68 (271)
332 3fdi_A Uncharacterized protein 93.3 0.047 1.6E-06 47.8 3.3 26 167-192 7-32 (201)
333 3thx_A DNA mismatch repair pro 93.3 0.16 5.5E-06 54.9 8.1 23 165-187 661-683 (934)
334 4hlc_A DTMP kinase, thymidylat 93.3 0.085 2.9E-06 46.2 5.0 29 167-195 3-31 (205)
335 3gmt_A Adenylate kinase; ssgci 93.3 0.048 1.6E-06 48.5 3.4 24 167-190 9-32 (230)
336 2gks_A Bifunctional SAT/APS ki 93.3 0.091 3.1E-06 53.5 5.7 48 145-192 351-398 (546)
337 2wji_A Ferrous iron transport 93.3 0.053 1.8E-06 45.4 3.4 22 167-188 4-25 (165)
338 2yz2_A Putative ABC transporte 93.3 0.041 1.4E-06 50.5 2.9 24 166-189 33-56 (266)
339 2fz4_A DNA repair protein RAD2 93.2 0.57 2E-05 41.9 10.4 38 148-190 95-132 (237)
340 1tq4_A IIGP1, interferon-induc 93.2 0.043 1.5E-06 53.6 3.1 25 165-189 68-92 (413)
341 3vr4_D V-type sodium ATPase su 93.2 0.16 5.6E-06 49.7 7.1 27 166-192 151-177 (465)
342 2ged_A SR-beta, signal recogni 93.1 0.066 2.2E-06 46.0 3.9 25 165-189 47-71 (193)
343 2ihy_A ABC transporter, ATP-bi 93.1 0.041 1.4E-06 50.8 2.7 25 166-190 47-71 (279)
344 2zej_A Dardarin, leucine-rich 93.1 0.04 1.4E-06 47.2 2.5 21 168-188 4-24 (184)
345 2c61_A A-type ATP synthase non 93.1 0.15 5.2E-06 50.2 6.7 27 166-192 152-178 (469)
346 2nq2_C Hypothetical ABC transp 93.1 0.042 1.4E-06 50.0 2.6 25 166-190 31-55 (253)
347 3gqb_B V-type ATP synthase bet 93.1 0.17 5.8E-06 49.6 7.0 26 166-191 147-172 (464)
348 1m8p_A Sulfate adenylyltransfe 93.1 0.08 2.8E-06 54.2 5.0 28 165-192 395-422 (573)
349 2www_A Methylmalonic aciduria 93.1 0.1 3.4E-06 50.0 5.4 29 165-193 73-101 (349)
350 4akg_A Glutathione S-transfera 93.0 0.5 1.7E-05 56.7 12.2 151 155-338 1260-1452(2695)
351 2qtf_A Protein HFLX, GTP-bindi 93.0 0.22 7.5E-06 47.9 7.7 25 165-189 178-202 (364)
352 1nij_A Hypothetical protein YJ 93.0 0.053 1.8E-06 51.2 3.3 26 165-190 3-28 (318)
353 2ffh_A Protein (FFH); SRP54, s 93.0 0.1 3.5E-06 51.1 5.4 36 165-201 97-132 (425)
354 3kta_A Chromosome segregation 93.0 0.05 1.7E-06 46.5 2.9 24 167-190 27-50 (182)
355 2h92_A Cytidylate kinase; ross 93.0 0.047 1.6E-06 48.3 2.8 24 167-190 4-27 (219)
356 2vp4_A Deoxynucleoside kinase; 93.0 0.043 1.5E-06 49.1 2.5 25 165-189 19-43 (230)
357 2ck3_A ATP synthase subunit al 93.0 0.16 5.6E-06 50.4 6.8 26 166-191 162-188 (510)
358 3ug7_A Arsenical pump-driving 92.9 0.14 4.8E-06 48.9 6.2 30 164-193 24-53 (349)
359 1bif_A 6-phosphofructo-2-kinas 92.9 0.1 3.4E-06 52.2 5.3 29 166-194 39-67 (469)
360 3qf4_A ABC transporter, ATP-bi 92.8 0.44 1.5E-05 49.0 10.2 23 167-189 370-392 (587)
361 3upu_A ATP-dependent DNA helic 92.8 0.099 3.4E-06 52.1 5.2 29 167-195 46-74 (459)
362 4dzz_A Plasmid partitioning pr 92.7 0.11 3.8E-06 45.1 4.9 34 167-201 2-36 (206)
363 2qe7_A ATP synthase subunit al 92.7 0.26 8.7E-06 48.9 7.8 25 166-190 162-187 (502)
364 2iut_A DNA translocase FTSK; n 92.7 2 6.7E-05 43.5 14.4 38 167-204 215-255 (574)
365 1p5z_B DCK, deoxycytidine kina 92.7 0.034 1.2E-06 50.9 1.5 27 165-191 23-49 (263)
366 3lv8_A DTMP kinase, thymidylat 92.7 0.098 3.4E-06 46.9 4.4 28 166-193 27-54 (236)
367 2ce2_X GTPase HRAS; signaling 92.7 0.058 2E-06 44.7 2.8 22 168-189 5-26 (166)
368 1z2a_A RAS-related protein RAB 92.6 0.083 2.8E-06 44.0 3.7 24 166-189 5-28 (168)
369 3vkw_A Replicase large subunit 92.6 0.4 1.4E-05 47.0 9.0 25 164-188 159-183 (446)
370 2wjg_A FEOB, ferrous iron tran 92.6 0.077 2.6E-06 45.3 3.6 24 166-189 7-30 (188)
371 2pjz_A Hypothetical protein ST 92.6 0.054 1.8E-06 49.5 2.7 24 167-190 31-54 (263)
372 3io3_A DEHA2D07832P; chaperone 92.6 0.13 4.4E-06 49.1 5.4 36 165-201 17-54 (348)
373 1fx0_A ATP synthase alpha chai 92.6 0.19 6.6E-06 49.9 6.7 25 166-190 163-188 (507)
374 3sop_A Neuronal-specific septi 92.6 0.059 2E-06 49.5 2.9 23 168-190 4-26 (270)
375 3kjh_A CO dehydrogenase/acetyl 92.5 0.081 2.8E-06 47.7 3.7 34 169-203 3-36 (254)
376 3zq6_A Putative arsenical pump 92.5 0.086 2.9E-06 49.9 4.0 35 166-201 14-48 (324)
377 4tmk_A Protein (thymidylate ki 92.5 0.23 7.7E-06 43.7 6.4 27 167-193 4-30 (213)
378 3iqw_A Tail-anchored protein t 92.5 0.14 4.8E-06 48.5 5.5 36 165-200 15-50 (334)
379 2iw3_A Elongation factor 3A; a 92.4 0.34 1.2E-05 52.4 8.9 23 166-188 461-483 (986)
380 3fvq_A Fe(3+) IONS import ATP- 92.4 0.066 2.2E-06 51.2 3.1 24 166-189 30-53 (359)
381 2nzj_A GTP-binding protein REM 92.4 0.089 3E-06 44.2 3.7 23 166-188 4-26 (175)
382 1x6v_B Bifunctional 3'-phospho 92.4 0.093 3.2E-06 54.0 4.4 27 165-191 51-77 (630)
383 1u8z_A RAS-related protein RAL 92.4 0.074 2.5E-06 44.2 3.1 23 167-189 5-27 (168)
384 1kao_A RAP2A; GTP-binding prot 92.4 0.074 2.5E-06 44.1 3.1 23 167-189 4-26 (167)
385 3con_A GTPase NRAS; structural 92.4 0.072 2.5E-06 45.6 3.1 23 167-189 22-44 (190)
386 1nrj_B SR-beta, signal recogni 92.4 0.083 2.8E-06 46.5 3.6 25 165-189 11-35 (218)
387 3hdt_A Putative kinase; struct 92.3 0.092 3.1E-06 46.7 3.7 26 166-191 14-39 (223)
388 1fzq_A ADP-ribosylation factor 92.3 0.1 3.5E-06 44.4 4.0 25 165-189 15-39 (181)
389 3ea0_A ATPase, para family; al 92.3 0.17 5.8E-06 45.4 5.6 38 166-203 4-42 (245)
390 1z08_A RAS-related protein RAB 92.3 0.077 2.6E-06 44.3 3.1 24 166-189 6-29 (170)
391 1c1y_A RAS-related protein RAP 92.2 0.079 2.7E-06 44.0 3.1 22 168-189 5-26 (167)
392 3tui_C Methionine import ATP-b 92.2 0.079 2.7E-06 50.7 3.4 23 166-188 54-76 (366)
393 1z47_A CYSA, putative ABC-tran 92.2 0.075 2.6E-06 50.8 3.2 24 166-189 41-64 (355)
394 1ek0_A Protein (GTP-binding pr 92.2 0.08 2.7E-06 44.1 3.1 22 168-189 5-26 (170)
395 2lkc_A Translation initiation 92.2 0.086 2.9E-06 44.5 3.3 24 165-188 7-30 (178)
396 2yyz_A Sugar ABC transporter, 92.2 0.08 2.7E-06 50.7 3.4 24 166-189 29-52 (359)
397 3q85_A GTP-binding protein REM 92.2 0.077 2.6E-06 44.3 3.0 22 167-188 3-24 (169)
398 2it1_A 362AA long hypothetical 92.1 0.082 2.8E-06 50.7 3.4 24 166-189 29-52 (362)
399 3rlf_A Maltose/maltodextrin im 92.1 0.082 2.8E-06 50.9 3.4 24 166-189 29-52 (381)
400 1z0j_A RAB-22, RAS-related pro 92.1 0.083 2.8E-06 44.1 3.1 23 167-189 7-29 (170)
401 1r8s_A ADP-ribosylation factor 92.1 0.085 2.9E-06 43.8 3.1 21 169-189 3-23 (164)
402 3nh6_A ATP-binding cassette SU 92.1 0.05 1.7E-06 50.9 1.8 24 166-189 80-103 (306)
403 2erx_A GTP-binding protein DI- 92.1 0.075 2.6E-06 44.4 2.8 22 167-188 4-25 (172)
404 3ihw_A Centg3; RAS, centaurin, 92.1 0.084 2.9E-06 45.2 3.1 24 166-189 20-43 (184)
405 4b3f_X DNA-binding protein smu 92.0 0.2 6.9E-06 52.2 6.6 38 150-191 193-230 (646)
406 1ky3_A GTP-binding protein YPT 92.0 0.085 2.9E-06 44.6 3.1 25 165-189 7-31 (182)
407 1wms_A RAB-9, RAB9, RAS-relate 92.0 0.086 2.9E-06 44.4 3.1 24 166-189 7-30 (177)
408 2gj8_A MNME, tRNA modification 92.0 0.074 2.5E-06 44.9 2.7 23 167-189 5-27 (172)
409 2yv5_A YJEQ protein; hydrolase 92.0 0.13 4.6E-06 48.0 4.6 33 152-190 156-188 (302)
410 1f2t_A RAD50 ABC-ATPase; DNA d 92.0 0.1 3.5E-06 43.1 3.4 25 166-190 23-47 (149)
411 1m7b_A RND3/RHOE small GTP-bin 92.0 0.078 2.7E-06 45.2 2.8 24 166-189 7-30 (184)
412 3bfv_A CAPA1, CAPB2, membrane 92.0 0.29 9.8E-06 44.9 6.8 37 164-200 80-117 (271)
413 3fkq_A NTRC-like two-domain pr 92.0 0.16 5.5E-06 49.0 5.3 39 164-203 141-180 (373)
414 1v43_A Sugar-binding transport 91.9 0.088 3E-06 50.6 3.4 23 166-188 37-59 (372)
415 3thx_B DNA mismatch repair pro 91.9 0.22 7.5E-06 53.7 6.7 24 165-188 672-695 (918)
416 1r2q_A RAS-related protein RAB 91.9 0.092 3.2E-06 43.7 3.1 23 167-189 7-29 (170)
417 1svi_A GTP-binding protein YSX 91.9 0.09 3.1E-06 45.2 3.1 25 165-189 22-46 (195)
418 1xx6_A Thymidine kinase; NESG, 91.9 0.21 7E-06 43.2 5.3 28 166-193 8-35 (191)
419 3def_A T7I23.11 protein; chlor 91.9 0.18 6.1E-06 46.0 5.2 34 156-189 26-59 (262)
420 3cio_A ETK, tyrosine-protein k 91.8 0.25 8.6E-06 46.0 6.3 37 164-200 102-139 (299)
421 1g29_1 MALK, maltose transport 91.8 0.087 3E-06 50.7 3.2 24 166-189 29-52 (372)
422 1g16_A RAS-related protein SEC 91.8 0.085 2.9E-06 44.0 2.8 23 167-189 4-26 (170)
423 1lw7_A Transcriptional regulat 91.8 0.087 3E-06 50.8 3.2 27 166-192 170-196 (365)
424 3c5c_A RAS-like protein 12; GD 91.8 0.093 3.2E-06 45.0 3.1 23 167-189 22-44 (187)
425 3f9v_A Minichromosome maintena 91.8 0.036 1.2E-06 57.1 0.5 48 143-190 295-351 (595)
426 3oaa_A ATP synthase subunit al 91.8 0.35 1.2E-05 47.9 7.4 24 166-189 162-186 (513)
427 3q72_A GTP-binding protein RAD 91.8 0.077 2.6E-06 44.2 2.5 21 168-188 4-24 (166)
428 2fn4_A P23, RAS-related protei 91.8 0.12 4.2E-06 43.5 3.9 25 165-189 8-32 (181)
429 3ez2_A Plasmid partition prote 91.8 0.28 9.7E-06 47.7 6.9 28 165-192 107-135 (398)
430 2r9v_A ATP synthase subunit al 91.8 0.33 1.1E-05 48.1 7.3 25 166-190 175-200 (515)
431 2hxs_A RAB-26, RAS-related pro 91.8 0.093 3.2E-06 44.2 3.0 24 166-189 6-29 (178)
432 3tmk_A Thymidylate kinase; pho 91.7 0.11 3.7E-06 45.9 3.4 27 166-192 5-31 (216)
433 1c9k_A COBU, adenosylcobinamid 91.7 0.076 2.6E-06 45.3 2.3 21 169-189 2-22 (180)
434 1z0f_A RAB14, member RAS oncog 91.7 0.098 3.4E-06 44.0 3.1 24 166-189 15-38 (179)
435 1upt_A ARL1, ADP-ribosylation 91.7 0.099 3.4E-06 43.7 3.1 24 166-189 7-30 (171)
436 3e1s_A Exodeoxyribonuclease V, 91.7 0.25 8.7E-06 50.5 6.7 27 167-193 205-231 (574)
437 1m2o_B GTP-binding protein SAR 91.6 0.09 3.1E-06 45.2 2.8 23 167-189 24-46 (190)
438 3ch4_B Pmkase, phosphomevalona 91.6 0.14 4.9E-06 44.4 4.0 26 165-190 10-35 (202)
439 2cjw_A GTP-binding protein GEM 91.6 0.1 3.5E-06 45.0 3.1 22 167-188 7-28 (192)
440 3d31_A Sulfate/molybdate ABC t 91.6 0.073 2.5E-06 50.7 2.3 24 166-189 26-49 (348)
441 3kkq_A RAS-related protein M-R 91.5 0.1 3.6E-06 44.2 3.1 24 166-189 18-41 (183)
442 3bc1_A RAS-related protein RAB 91.5 0.1 3.5E-06 44.6 3.1 24 166-189 11-34 (195)
443 3pqc_A Probable GTP-binding pr 91.5 0.11 3.6E-06 44.6 3.2 24 166-189 23-46 (195)
444 1h65_A Chloroplast outer envel 91.5 0.2 6.9E-06 45.8 5.3 26 164-189 37-62 (270)
445 3t1o_A Gliding protein MGLA; G 91.5 0.099 3.4E-06 44.9 3.0 27 166-192 14-40 (198)
446 2oil_A CATX-8, RAS-related pro 91.5 0.11 3.6E-06 44.7 3.2 24 166-189 25-48 (193)
447 4dsu_A GTPase KRAS, isoform 2B 91.5 0.11 3.6E-06 44.3 3.1 23 167-189 5-27 (189)
448 2iwr_A Centaurin gamma 1; ANK 91.5 0.079 2.7E-06 44.8 2.3 23 167-189 8-30 (178)
449 1mh1_A RAC1; GTP-binding, GTPa 91.4 0.11 3.7E-06 44.1 3.1 22 167-188 6-27 (186)
450 2oze_A ORF delta'; para, walke 91.4 0.15 5.1E-06 47.4 4.3 40 151-193 22-64 (298)
451 3bwd_D RAC-like GTP-binding pr 91.3 0.11 3.9E-06 43.9 3.1 23 167-189 9-31 (182)
452 2a9k_A RAS-related protein RAL 91.3 0.11 3.9E-06 44.0 3.1 24 166-189 18-41 (187)
453 2efe_B Small GTP-binding prote 91.3 0.11 3.9E-06 43.8 3.1 23 167-189 13-35 (181)
454 2y8e_A RAB-protein 6, GH09086P 91.3 0.1 3.6E-06 43.8 2.8 22 167-188 15-36 (179)
455 2cxx_A Probable GTP-binding pr 91.3 0.096 3.3E-06 44.7 2.6 22 168-189 3-24 (190)
456 2bme_A RAB4A, RAS-related prot 91.3 0.1 3.6E-06 44.3 2.8 24 166-189 10-33 (186)
457 2atv_A RERG, RAS-like estrogen 91.2 0.11 3.9E-06 44.7 3.1 24 166-189 28-51 (196)
458 3cbq_A GTP-binding protein REM 91.2 0.086 2.9E-06 45.6 2.3 22 166-187 23-44 (195)
459 3tw8_B RAS-related protein RAB 91.2 0.12 4.1E-06 43.6 3.2 24 165-188 8-31 (181)
460 2g6b_A RAS-related protein RAB 91.2 0.12 4E-06 43.6 3.1 24 166-189 10-33 (180)
461 2obl_A ESCN; ATPase, hydrolase 91.2 0.15 5E-06 48.7 4.0 27 166-192 71-97 (347)
462 3gd7_A Fusion complex of cysti 91.1 0.11 3.8E-06 50.3 3.1 24 166-189 47-70 (390)
463 4f4c_A Multidrug resistance pr 91.1 0.5 1.7E-05 53.5 8.9 22 167-188 1106-1127(1321)
464 3clv_A RAB5 protein, putative; 91.1 0.12 4.1E-06 44.5 3.1 24 166-189 7-30 (208)
465 3t5g_A GTP-binding protein RHE 91.1 0.11 3.9E-06 43.9 2.8 23 166-188 6-28 (181)
466 1oxx_K GLCV, glucose, ABC tran 91.1 0.07 2.4E-06 51.0 1.6 24 166-189 31-54 (353)
467 2bov_A RAla, RAS-related prote 91.1 0.12 4.2E-06 44.7 3.1 24 166-189 14-37 (206)
468 2woo_A ATPase GET3; tail-ancho 91.0 0.24 8.3E-06 46.8 5.4 29 165-193 18-46 (329)
469 1zd9_A ADP-ribosylation factor 91.0 0.13 4.3E-06 44.1 3.1 23 167-189 23-45 (188)
470 1vg8_A RAS-related protein RAB 91.0 0.12 4.2E-06 44.8 3.1 24 166-189 8-31 (207)
471 2gza_A Type IV secretion syste 91.0 0.11 3.7E-06 50.0 2.9 35 167-202 176-210 (361)
472 1pui_A ENGB, probable GTP-bind 91.0 0.074 2.5E-06 46.4 1.7 24 165-188 25-48 (210)
473 2ew1_A RAS-related protein RAB 91.0 0.12 4E-06 45.1 2.8 24 166-189 26-49 (201)
474 2fh5_B SR-beta, signal recogni 90.9 0.13 4.3E-06 45.1 3.1 24 166-189 7-30 (214)
475 3mfy_A V-type ATP synthase alp 90.9 0.48 1.6E-05 47.5 7.4 24 166-189 227-250 (588)
476 3dz8_A RAS-related protein RAB 90.9 0.12 4.2E-06 44.3 3.0 23 167-189 24-46 (191)
477 1gwn_A RHO-related GTP-binding 90.9 0.12 4E-06 45.2 2.8 24 166-189 28-51 (205)
478 2gf9_A RAS-related protein RAB 90.9 0.13 4.5E-06 44.0 3.1 24 166-189 22-45 (189)
479 2a5j_A RAS-related protein RAB 90.9 0.13 4.5E-06 44.1 3.2 23 167-189 22-44 (191)
480 3reg_A RHO-like small GTPase; 90.9 0.13 4.5E-06 44.2 3.1 24 166-189 23-46 (194)
481 4gzl_A RAS-related C3 botulinu 90.9 0.14 4.8E-06 44.6 3.3 24 166-189 30-53 (204)
482 1byi_A Dethiobiotin synthase; 90.8 0.22 7.5E-06 44.0 4.6 33 167-199 2-35 (224)
483 2g3y_A GTP-binding protein GEM 90.8 0.13 4.3E-06 45.3 3.0 23 166-188 37-59 (211)
484 1f6b_A SAR1; gtpases, N-termin 90.8 0.097 3.3E-06 45.4 2.2 23 166-188 25-47 (198)
485 1z06_A RAS-related protein RAB 90.8 0.14 4.6E-06 43.9 3.1 24 166-189 20-43 (189)
486 4i1u_A Dephospho-COA kinase; s 90.8 0.15 5.1E-06 44.7 3.3 23 166-188 9-31 (210)
487 2fg5_A RAB-22B, RAS-related pr 90.8 0.12 4.2E-06 44.3 2.8 24 166-189 23-46 (192)
488 3tkl_A RAS-related protein RAB 90.8 0.14 4.7E-06 44.0 3.1 24 166-189 16-39 (196)
489 2p5s_A RAS and EF-hand domain 90.7 0.14 4.7E-06 44.3 3.2 24 166-189 28-51 (199)
490 3oes_A GTPase rhebl1; small GT 90.7 0.12 4.3E-06 44.7 2.8 24 166-189 24-47 (201)
491 1zbd_A Rabphilin-3A; G protein 90.7 0.12 4.3E-06 44.7 2.8 24 166-189 8-31 (203)
492 4dkx_A RAS-related protein RAB 90.7 0.14 4.8E-06 45.2 3.1 21 168-188 15-35 (216)
493 3la6_A Tyrosine-protein kinase 90.6 0.44 1.5E-05 44.0 6.6 50 151-200 75-127 (286)
494 1ega_A Protein (GTP-binding pr 90.6 0.15 5E-06 47.7 3.4 24 166-189 8-31 (301)
495 1x3s_A RAS-related protein RAB 90.6 0.14 5E-06 43.7 3.1 23 167-189 16-38 (195)
496 1ihu_A Arsenical pump-driving 90.6 0.22 7.7E-06 51.3 5.0 29 165-193 7-35 (589)
497 3lxx_A GTPase IMAP family memb 90.5 0.16 5.6E-06 45.4 3.6 25 165-189 28-52 (239)
498 4f4c_A Multidrug resistance pr 90.5 0.36 1.2E-05 54.6 7.0 24 167-190 445-468 (1321)
499 4bas_A ADP-ribosylation factor 90.5 0.16 5.6E-06 43.6 3.4 24 165-188 16-39 (199)
500 2gf0_A GTP-binding protein DI- 90.5 0.14 4.6E-06 44.1 2.8 23 166-188 8-30 (199)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.2e-42 Score=354.56 Aligned_cols=301 Identities=17% Similarity=0.135 Sum_probs=225.7
Q ss_pred hchhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCChhHHHHHHHH----HhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 146 VGIESRLEKLKFLMGAG-CNDVRMIGIWGMGGLGKTTLARVVYD----LISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 146 vGR~~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
+||+.++++|.++|... ....++|+|+||||+||||||+++|+ ++..+|+..+|+ ++++... .+. ..++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~-~~~-~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP-KST-FDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST-THH-HHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC-CCH-HHHHHHH
Confidence 59999999999999754 34579999999999999999999996 688899888877 4554332 223 7888888
Q ss_pred HHHHhcccC-CC-----ccchhhhHHHHHHHHhcC-ceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhC
Q 038919 221 ISDLLKLAD-NS-----IRNVYDGINMIGRRLRQK-KVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKLH 293 (483)
Q Consensus 221 l~~~~~~~~-~~-----~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~ 293 (483)
+..+..... .. ..+.......+++.++++ ++||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 888765421 11 123344578899999996 999999999998876 3332 3799999999999988776
Q ss_pred C-CcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCCCHHHHHHHHHH-hccCC
Q 038919 294 R-VEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGRPVDEWTSTLER-LKREP 371 (483)
Q Consensus 294 ~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~~~~~~~~~l~~-l~~~~ 371 (483)
. ...+|+|++|+.++|++||.++++.... .+...+++.+|+++|+|+||||+.+|+.++.+. .+|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc
Confidence 5 3467999999999999999999876543 357778999999999999999999999997764 233333322 22112
Q ss_pred CccHHHHHHHhhcCCcHHHHHHHh-----------hhhcCCCCCCHHHHHHHHHhC--CCC-----------hhhhHHHH
Q 038919 372 ENEILDILQISFDGLKEAEKEIFL-----------DVACFFKGEKRDYVSKILDSC--GFE-----------PVIGIGVL 427 (483)
Q Consensus 372 ~~~v~~~l~~s~~~L~~~~k~~l~-----------~la~f~~~~~~~~l~~~~~~~--~~~-----------~~~~l~~L 427 (483)
...+..++..||+.|++..+.||+ +||+||.+++.+ ..+|.+. |+. ....+++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 344555566666666666666666 999999987766 5677765 333 22369999
Q ss_pred hhCCceeEec---CCeEEccHHHHHHHHHHHhhhC
Q 038919 428 IEKSLLTICE---SDRLWMHDLLLEMGRQIVRRQS 459 (483)
Q Consensus 428 ~~~sLi~~~~---~~~~~mH~lvr~~~~~~~~~~~ 459 (483)
+++||++... .++|.|||+||+||++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999998764 3469999999999997765543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-38 Score=360.01 Aligned_cols=303 Identities=19% Similarity=0.271 Sum_probs=243.5
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH---hhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL---ISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
+.||||+.++++|.++|...+++.++|+|+||||+||||||++++++ ...+|+..+||.+++..... .. ...+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~~~~~~ 201 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS-GL-LMKLQN 201 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH-HH-HHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch-HH-HHHHHH
Confidence 56999999999999999766667899999999999999999999987 45668888888777653221 11 333444
Q ss_pred HHHHHhcccC---CCccchhhhHHHHHHHHhcC--ceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhh-C
Q 038919 220 LISDLLKLAD---NSIRNVYDGINMIGRRLRQK--KVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKL-H 293 (483)
Q Consensus 220 ll~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~-~ 293 (483)
++..+..... ....+.......++..+.++ ++||||||||+.++++.+ ++|++||||||++.++.. .
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 5555433221 22345566777777778776 999999999999877654 679999999999988743 4
Q ss_pred CCcceEecCC-CChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCCCHHHHHHHHHHhccCCC
Q 038919 294 RVEEVFKLEA-LTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGRPVDEWTSTLERLKREPE 372 (483)
Q Consensus 294 ~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~~~~~~~~~l~~l~~~~~ 372 (483)
.....+.+++ |+.+||++||...++... +...+.+++|+++|+|+||||+++|++|+.++ ..|...+..+.....
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 4557889996 999999999998884432 23346689999999999999999999998765 578888888755321
Q ss_pred -----------ccHHHHHHHhhcCCcHHHHHHHhhhhcCCCC--CCHHHHHHHHHhCCCChhhhHHHHhhCCceeEecCC
Q 038919 373 -----------NEILDILQISFDGLKEAEKEIFLDVACFFKG--EKRDYVSKILDSCGFEPVIGIGVLIEKSLLTICESD 439 (483)
Q Consensus 373 -----------~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~ 439 (483)
..+..+|..||+.|++++|.||+++|+||.+ ++.+.+..+|..++......+++|+++|||+...++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESS
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCC
Confidence 3589999999999999999999999999986 588899999987777788899999999999987666
Q ss_pred e---EEccHHHHHHHHHHHhhh
Q 038919 440 R---LWMHDLLLEMGRQIVRRQ 458 (483)
Q Consensus 440 ~---~~mH~lvr~~~~~~~~~~ 458 (483)
. |+||+++|+|+++++.++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 4 999999999999986654
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.5e-38 Score=329.18 Aligned_cols=326 Identities=18% Similarity=0.241 Sum_probs=243.4
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh---hcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI---SHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
+.||||+.+++.|.++|...+++.++|+|+||||+||||||.+++++. ..+|+..++|.++.... .... ...+..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~-~~~l~~ 201 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGL-LMKLQN 201 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHH-HHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHH-HHHHHH
Confidence 579999999999999998655568999999999999999999999764 67787666766565431 1111 122222
Q ss_pred HHHHHhccc---CCCccchhhhHHHHHHHHhc--CceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCC
Q 038919 220 LISDLLKLA---DNSIRNVYDGINMIGRRLRQ--KKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKLHR 294 (483)
Q Consensus 220 ll~~~~~~~---~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~ 294 (483)
+...+.... .....+.......+...+.+ +++||||||+|+...++.+ +++++||||||++.+.....
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 232322111 12234556667777777776 7899999999998877643 57899999999998766543
Q ss_pred CcceEec---CCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCCCHHHHHHHHHHhccCC
Q 038919 295 VEEVFKL---EALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGRPVDEWTSTLERLKREP 371 (483)
Q Consensus 295 ~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~~~~~~~~~l~~l~~~~ 371 (483)
...+++ ++|+.+|+++||...++.. .....+.+.+|++.|+|+||||+++|+.++... ..|...+..+....
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQ 349 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCC
T ss_pred -CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhH
Confidence 344555 5899999999999988642 222235688999999999999999999997654 46888888776432
Q ss_pred -----------CccHHHHHHHhhcCCcHHHHHHHhhhhcCCCC--CCHHHHHHHHHhCCCChhhhHHHHhhCCceeEecC
Q 038919 372 -----------ENEILDILQISFDGLKEAEKEIFLDVACFFKG--EKRDYVSKILDSCGFEPVIGIGVLIEKSLLTICES 438 (483)
Q Consensus 372 -----------~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~~ 438 (483)
..++..++..||+.|+++.|.||+++|+||.+ ++.+.+..+|..+.......++.|+++|||+...+
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecC
Confidence 24789999999999999999999999999875 67788888887665567788999999999986543
Q ss_pred C---eEEccHHHHHHHHHHHhh------------h-------CCCCCCCccccccCchHHHHhccC
Q 038919 439 D---RLWMHDLLLEMGRQIVRR------------Q-------SPREPGKRSRLWEEADLCHVLSQN 482 (483)
Q Consensus 439 ~---~~~mH~lvr~~~~~~~~~------------~-------~~~~~~~r~rl~~~~~~~~~l~~~ 482 (483)
+ +|+||+++|+++++.... - -...+..+.++|+++.+++++.-+
T Consensus 430 ~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~ 495 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAK 495 (591)
T ss_dssp TTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred CCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcC
Confidence 2 699999999999987221 0 022334566778877888776543
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.2e-38 Score=330.09 Aligned_cols=303 Identities=17% Similarity=0.155 Sum_probs=228.1
Q ss_pred hchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHH--HhhcccceeEEEEecccccccCCcHHHHHHHHHHH
Q 038919 146 VGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYD--LISHEFDGSSFLADVKEKYDKEGSVISLQKQLISD 223 (483)
Q Consensus 146 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 223 (483)
|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+..++|.++++..+ . ..+...+...
T Consensus 131 VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d---~-~~IL~~Ll~l 205 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---P-ETVLEMLQKL 205 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS---H-HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC---H-HHHHHHHHHH
Confidence 99999999999998753 2478999999999999999999996 47888998777777765433 2 4444444443
Q ss_pred Hhccc---CC-------CccchhhhHHHHHHHH---hcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHH
Q 038919 224 LLKLA---DN-------SIRNVYDGINMIGRRL---RQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLL 290 (483)
Q Consensus 224 ~~~~~---~~-------~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 290 (483)
+.... .. ...+.+.....+++.+ .++++||||||||+.++++.+ ++||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHH
Confidence 22111 00 0112334455666655 579999999999999999886 3689999999999887
Q ss_pred hhCCCcceEecC------CCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCC--CHHHHHH
Q 038919 291 KLHRVEEVFKLE------ALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGR--PVDEWTS 362 (483)
Q Consensus 291 ~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~--~~~~~~~ 362 (483)
..+.....+.|+ +|+.+||++||+..... . . .++..+ .|+|+||||+++|+.|+++ +...|..
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~-~----eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-R-P----QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCC-C-T----TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCC-C-H----HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 543333356666 99999999999988532 2 1 123333 3999999999999999875 6777865
Q ss_pred HHHHhccCCCccHHHHHHHhhcCCcHHH-HHHHhhhhcCCCC--CCHHHHHHHHHhCCC-ChhhhHHHHhhCCceeEec-
Q 038919 363 TLERLKREPENEILDILQISFDGLKEAE-KEIFLDVACFFKG--EKRDYVSKILDSCGF-EPVIGIGVLIEKSLLTICE- 437 (483)
Q Consensus 363 ~l~~l~~~~~~~v~~~l~~s~~~L~~~~-k~~l~~la~f~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~~~- 437 (483)
. ....+..+|+.||+.|++++ |.||+++|+||.+ ++.+.+..+|..++. +....+++|+++|||+..+
T Consensus 350 ~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~ 422 (1221)
T 1vt4_I 350 V-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422 (1221)
T ss_dssp C-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSS
T ss_pred C-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCC
Confidence 3 35679999999999999999 9999999999986 567788999987642 4677899999999999863
Q ss_pred CCeEEccHHHHHHHHHHHhhhCCCCCCCccccccCchHHHHhcc
Q 038919 438 SDRLWMHDLLLEMGRQIVRRQSPREPGKRSRLWEEADLCHVLSQ 481 (483)
Q Consensus 438 ~~~~~mH~lvr~~~~~~~~~~~~~~~~~r~rl~~~~~~~~~l~~ 481 (483)
.++|+||+|+++++ +.....+..++|+.++.++++++.+
T Consensus 423 ~~rYrMHDLllELr-----~~~~e~~alHrRLvd~Y~~~~vf~~ 461 (1221)
T 1vt4_I 423 ESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTFDS 461 (1221)
T ss_dssp SSEEBCCCHHHHHH-----HHHSCCTTHHHHHHHHHHHHHHCCC
T ss_pred CCEEEehHHHHHHh-----cCCCcHHHHHHHHHHHHHhhCcCCC
Confidence 56899999998733 2222456778888888777766543
No 5
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3e-38 Score=270.07 Aligned_cols=140 Identities=44% Similarity=0.756 Sum_probs=115.8
Q ss_pred CchhhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhcCCc-eEeee
Q 038919 1 TFISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNREDQ-IFPIF 79 (483)
Q Consensus 1 ~f~~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~~~~-v~Pvf 79 (483)
+|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|||+||++|+||++||++|++|.+.+++ |+|||
T Consensus 23 ~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIf 102 (176)
T 3jrn_A 23 NFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIF 102 (176)
T ss_dssp THHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999988889 99999
Q ss_pred ecccCccccccchhhhhhhhhhHHHhhhhHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHhhh
Q 038919 80 YDVEPTVVRKQTTSFGEAFTKHEEFFRDNIEKVQKWRHALKVVANISGWELKDSKIRTESEILKELV 146 (483)
Q Consensus 80 ~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~~i~~~v 146 (483)
|+|+|++||+|+|+|+++|.+|+.+ ...+++++|+.||+.+++++|+.. ..+|+++|..+|
T Consensus 103 y~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~----~~~e~~~i~~Iv 163 (176)
T 3jrn_A 103 YGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS----GDDDSKLVDKIA 163 (176)
T ss_dssp CSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC----CSCHHHHHHHHH
T ss_pred ecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec----CCCHHHHHHHHH
Confidence 9999999999999999999999887 556889999999999999999943 245777665544
No 6
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=6.7e-37 Score=265.53 Aligned_cols=141 Identities=40% Similarity=0.748 Sum_probs=126.5
Q ss_pred CchhhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhc-CCc-eEee
Q 038919 1 TFISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNR-EDQ-IFPI 78 (483)
Q Consensus 1 ~f~~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~-~~~-v~Pv 78 (483)
+|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|||+||++|.||++||++|++|.+. +++ ||||
T Consensus 50 ~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPI 129 (204)
T 3ozi_A 50 QFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPI 129 (204)
T ss_dssp THHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCE
T ss_pred HHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEE
Confidence 59999999999999999999989999999999999999999999999999999999999999999999875 577 9999
Q ss_pred eecccCccccccchhhhhhhhhhHHHhhhhHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHhh
Q 038919 79 FYDVEPTVVRKQTTSFGEAFTKHEEFFRDNIEKVQKWRHALKVVANISGWELKDSKIRTESEILKEL 145 (483)
Q Consensus 79 f~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~~i~~~ 145 (483)
||+|+|++||+|+|+|+++|.+|+.++. .+++++|+.||+.+++++||.... ...+.+++..+
T Consensus 130 FY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~--~~~e~~~i~~I 192 (204)
T 3ozi_A 130 FYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGK--NDKQGAIADKV 192 (204)
T ss_dssp EESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECT--TSCHHHHHHHH
T ss_pred EeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCC--CCCHHHHHHHH
Confidence 9999999999999999999999988764 367999999999999999994322 23355555443
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.89 E-value=1.8e-24 Score=184.69 Aligned_cols=101 Identities=25% Similarity=0.420 Sum_probs=96.2
Q ss_pred CchhhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhcCCc-eEeee
Q 038919 1 TFISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNREDQ-IFPIF 79 (483)
Q Consensus 1 ~f~~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~~~~-v~Pvf 79 (483)
+|+.||+.+|+++||+||+|++++.+|+.|.++|.+||++|+++|+|+|++|+.|.||+.||..+++|...+++ |+|||
T Consensus 34 ~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~ 113 (154)
T 3h16_A 34 DFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIW 113 (154)
T ss_dssp TTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999998877777 99999
Q ss_pred ecccCccccccchhhhhhhhhh
Q 038919 80 YDVEPTVVRKQTTSFGEAFTKH 101 (483)
Q Consensus 80 ~~v~p~~vr~~~~~~~~~~~~~ 101 (483)
|+++|++||+|.|.|++.|...
T Consensus 114 ~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 114 HKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp ESCCTGGGTTTCCCCCSSCCEE
T ss_pred ecCCHHHHhhCCccHHHHHhhh
Confidence 9999999999999999887754
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.83 E-value=1.3e-18 Score=170.01 Aligned_cols=287 Identities=15% Similarity=0.120 Sum_probs=175.0
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccc--cCCcHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD--KEGSVISLQKQL 220 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~l 220 (483)
..|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++.. .+| .++..... .......+...+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GIL-IDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEE-EEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEE-EEeecccccccCCCHHHHHHHH
Confidence 57999999999999998753 6899999999999999999998751 333 33432210 001113333333
Q ss_pred HHHHhc---------------ccCC--CccchhhhHHHHHHHHhc-CceEEEEcCCCCH---------HHHHHHhcCCCC
Q 038919 221 ISDLLK---------------LADN--SIRNVYDGINMIGRRLRQ-KKVLLVIDDVAHV---------EQLRRLAGKRDW 273 (483)
Q Consensus 221 l~~~~~---------------~~~~--~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~---------~~~~~l~~~~~~ 273 (483)
...+.. .... ...+.......+.+.... ++++|||||++.. +.+..+......
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 332211 0000 012334445555554443 4999999999652 222222211111
Q ss_pred CCCCcEEEEEcCCHhHHhh-----------C-CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 274 FGPGSRIIITTRDEHLLKL-----------H-RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 274 ~~~~~~iliTtR~~~~~~~-----------~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
.++.++|+|++....... . .....+.+.||+.+|+.+++.......... ...+.+..+++.|+|+
T Consensus 162 -~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 162 -LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGI 238 (350)
T ss_dssp -CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTC
T ss_pred -cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCC
Confidence 257889999887643221 1 112478999999999999998754322111 1235678899999999
Q ss_pred hHHHHHHHHHhCC-CCHHHHHHHHHHhccCCCccHHHHHHHhhcCC---cHHHHHHHhhhhcCCCCCCHHHHHHHHHhC-
Q 038919 342 PLALKVLGSFLFG-RPVDEWTSTLERLKREPENEILDILQISFDGL---KEAEKEIFLDVACFFKGEKRDYVSKILDSC- 416 (483)
Q Consensus 342 PLal~~la~~l~~-~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L---~~~~k~~l~~la~f~~~~~~~~l~~~~~~~- 416 (483)
|+++..++..+.. .+...+ ...+. ..+...+...+..+ ++..+.++..+|+ ...+...+...+...
T Consensus 239 P~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKG 309 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 9999999876432 222222 11111 11122222333334 7889999999998 345666776655321
Q ss_pred -CC---ChhhhHHHHhhCCceeEecCCeEEc-cHHHHHHHH
Q 038919 417 -GF---EPVIGIGVLIEKSLLTICESDRLWM-HDLLLEMGR 452 (483)
Q Consensus 417 -~~---~~~~~l~~L~~~sLi~~~~~~~~~m-H~lvr~~~~ 452 (483)
+. .....++.|.+.+||... ++.|.+ |++++++.+
T Consensus 310 ~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 310 TKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 22 235679999999999887 567765 899998754
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.81 E-value=7.1e-19 Score=172.30 Aligned_cols=283 Identities=17% Similarity=0.172 Sum_probs=167.3
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccccc-ccCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKY-DKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll 221 (483)
..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+.+++++.... .+|+ ++.... ............+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYL-DLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEE-EGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEE-EchhhccccCCCHHHHHHHHH
Confidence 579999999999999 763 599999999999999999999876532 3343 343220 00001122222222
Q ss_pred HHH-------------hccc------CC---------CccchhhhHHHHHHHHhcCceEEEEcCCCCHH---------HH
Q 038919 222 SDL-------------LKLA------DN---------SIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE---------QL 264 (483)
Q Consensus 222 ~~~-------------~~~~------~~---------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~~ 264 (483)
..+ +... .. ...........+.+... ++++|||||++... .+
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 211 1100 00 01122222333322211 49999999996532 23
Q ss_pred HHHhcCCCCCCCCcEEEEEcCCHhHHhh-----------CCC-cceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHH
Q 038919 265 RRLAGKRDWFGPGSRIIITTRDEHLLKL-----------HRV-EEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQ 332 (483)
Q Consensus 265 ~~l~~~~~~~~~~~~iliTtR~~~~~~~-----------~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 332 (483)
..+... .++.++|+|++....... .+. ...+.+.+|+.+|+.+++...+.......+. ..
T Consensus 162 ~~~~~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~ 233 (357)
T 2fna_A 162 AYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YE 233 (357)
T ss_dssp HHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HH
T ss_pred HHHHHc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HH
Confidence 333222 247889999997653221 111 2578999999999999998764321111111 27
Q ss_pred HHHHHhCCChHHHHHHHHHhCC-CCHHHHHHHHHHhccCCCccHHHHHHHhh---cCCcHHHHHHHhhhhcCCCCCCHHH
Q 038919 333 LVVNYAGGLPLALKVLGSFLFG-RPVDEWTSTLERLKREPENEILDILQISF---DGLKEAEKEIFLDVACFFKGEKRDY 408 (483)
Q Consensus 333 ~i~~~~~G~PLal~~la~~l~~-~~~~~~~~~l~~l~~~~~~~v~~~l~~s~---~~L~~~~k~~l~~la~f~~~~~~~~ 408 (483)
.+++.|+|+|+++..++..+.. .+...|.. .+.......+..-+...+ ..|++..+.++..+|+ . . +...
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~ 307 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSD 307 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHH
Confidence 8999999999999999877642 23333321 111000001111122111 1688999999999998 3 3 6666
Q ss_pred HHHHHH-hCC-----CChhhhHHHHhhCCceeEecCCeEE-ccHHHHHHH
Q 038919 409 VSKILD-SCG-----FEPVIGIGVLIEKSLLTICESDRLW-MHDLLLEMG 451 (483)
Q Consensus 409 l~~~~~-~~~-----~~~~~~l~~L~~~sLi~~~~~~~~~-mH~lvr~~~ 451 (483)
+...+. ..+ ......++.|.+.+||... ++.|. .|++++++.
T Consensus 308 l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 308 VKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 665432 112 2345679999999999887 46676 489999874
No 10
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.78 E-value=3.7e-20 Score=155.37 Aligned_cols=115 Identities=16% Similarity=0.296 Sum_probs=79.1
Q ss_pred chhhHHHHHHh--CCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhcCCc-eEee
Q 038919 2 FISHLYTALND--KGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNREDQ-IFPI 78 (483)
Q Consensus 2 f~~~L~~~L~~--~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~~~~-v~Pv 78 (483)
|+.||+.+|++ .|+++|+|++++.+|+.+.++|.+||++|+++|+|+|++|++|.||+.|+..++.+...+.. ||||
T Consensus 24 ~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv 103 (146)
T 3ub2_A 24 AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPL 103 (146)
T ss_dssp HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEE
T ss_pred HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 78899999999 59999999999999999999999999999999999999999999999999999998744344 8899
Q ss_pred eecccCccc----cccchhhhhhhhhhHHHhhhhHHHHHHHHHHH
Q 038919 79 FYDVEPTVV----RKQTTSFGEAFTKHEEFFRDNIEKVQKWRHAL 119 (483)
Q Consensus 79 f~~v~p~~v----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 119 (483)
||+++++++ |..... .+......+.+..+.+.+|++++
T Consensus 104 ~~~v~~~~lp~~Lr~~~~i---d~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 104 LSGLSRAAYPPELRFMYYV---DGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp ECSCCGGGSCGGGGGSCCE---ETTSGGGGHHHHHHHHHHHHTTC
T ss_pred EcCCChhhCCHHHhCeeee---eccChHhhHHHHHHHHHHHHHhc
Confidence 999986554 433221 11234566666777788888764
No 11
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.77 E-value=1.4e-17 Score=166.49 Aligned_cols=295 Identities=15% Similarity=0.085 Sum_probs=172.3
Q ss_pred HhhhchhHHHHHHHHHh-hc--CC--CCcEEEEE--eCCCCCChhHHHHHHHHHhhcc-----cceeEEEEecccccccC
Q 038919 143 KELVGIESRLEKLKFLM-GA--GC--NDVRMIGI--WGMGGLGKTTLARVVYDLISHE-----FDGSSFLADVKEKYDKE 210 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L-~~--~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~ 210 (483)
..|+||+.+++.+.+++ .. .. ...+.+.| +|++|+|||+|++++++..... +...+.+.++... .
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA---P 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC---C
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC---C
Confidence 57999999999999988 42 11 23467777 9999999999999999887653 2333334333221 2
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCCH--------HHHHHHhcCCCCC---C--
Q 038919 211 GSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHV--------EQLRRLAGKRDWF---G-- 275 (483)
Q Consensus 211 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~---~-- 275 (483)
....+...++..+.........+.......+...+. +++++|||||++.. +.+..+...+... +
T Consensus 99 -~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 99 -NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp -SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred -CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 225667777766533211112233444555555554 67999999999653 4444433322111 2
Q ss_pred CCcEEEEEcCCHhHHhh---------CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhC------C
Q 038919 276 PGSRIIITTRDEHLLKL---------HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAG------G 340 (483)
Q Consensus 276 ~~~~iliTtR~~~~~~~---------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~------G 340 (483)
....+|+||+...+... ......+.+++|+.+++.++|...+...........+....+++.++ |
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC
Confidence 34557778875442211 11223389999999999999976542111111122467888999999 9
Q ss_pred ChHHHHHHHHHh------CCC---CHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCC----CCCCHH
Q 038919 341 LPLALKVLGSFL------FGR---PVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFF----KGEKRD 407 (483)
Q Consensus 341 ~PLal~~la~~l------~~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~----~~~~~~ 407 (483)
+|..+..+.... .+. +...+...+..... ...+..++..||+..+.++..+|.+. ..++..
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 997666554332 111 22333333322210 23345567899999999999998753 234554
Q ss_pred HHHH----HH-HhCCCC------hhhhHHHHhhCCceeEec-----CCeEEccHHH
Q 038919 408 YVSK----IL-DSCGFE------PVIGIGVLIEKSLLTICE-----SDRLWMHDLL 447 (483)
Q Consensus 408 ~l~~----~~-~~~~~~------~~~~l~~L~~~sLi~~~~-----~~~~~mH~lv 447 (483)
.+.. +. ...+.. ....++.|.+.|||.... .|+|.+|.|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 332 LLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 4332 22 222321 345789999999998653 3345455443
No 12
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=5.5e-15 Score=146.22 Aligned_cols=280 Identities=12% Similarity=0.042 Sum_probs=173.0
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc------c-ceeEEEEecccccccCCcH
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE------F-DGSSFLADVKEKYDKEGSV 213 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f-~~~~~~~~~~~~~~~~~~~ 213 (483)
..|+||+.+++.+..++.. .....+.+.|+|++|+|||+||+.+++.+... + ...+.+.+.... .+..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~ 96 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV---GGTP 96 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH---CSCH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC---CCCH
Confidence 6799999999999987764 23345789999999999999999999987443 2 333344433322 1022
Q ss_pred HHHHHHHHHHHhcccCC-CccchhhhHHHHHHHHhcCceEEEEcCCCCHH------H-HHHHhcCCCCCCCCcEEEEEcC
Q 038919 214 ISLQKQLISDLLKLADN-SIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE------Q-LRRLAGKRDWFGPGSRIIITTR 285 (483)
Q Consensus 214 ~~l~~~ll~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~-~~~l~~~~~~~~~~~~iliTtR 285 (483)
..+...++..+.+.... ...+.......+...+..++.+|||||++... . +..+.... .+..+|+||+
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~ 172 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECS
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEEC
Confidence 56666666665433221 12233455666777777766699999996543 2 44454432 6788888888
Q ss_pred CHhHHhh------CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhC---CChHHH-HHHHHHh--C
Q 038919 286 DEHLLKL------HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAG---GLPLAL-KVLGSFL--F 353 (483)
Q Consensus 286 ~~~~~~~------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal-~~la~~l--~ 353 (483)
....... ......+.+++++.++..+++...+...........+..+.+++.++ |+|..+ ..+-... .
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 6521110 01123899999999999999998753211011112245677888888 998743 3332221 1
Q ss_pred ----CCCHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCCC-CCCHHHHHHHHHhCCCC------hhh
Q 038919 354 ----GRPVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFFK-GEKRDYVSKILDSCGFE------PVI 422 (483)
Q Consensus 354 ----~~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~-~~~~~~l~~~~~~~~~~------~~~ 422 (483)
.-+...+..++.+.. ...+..+++.|++.++.++..++.... +........+...-+.. ...
T Consensus 253 ~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 325 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSD 325 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 134556666655542 245667789999999999988887111 11112233333332211 245
Q ss_pred hHHHHhhCCceeEe
Q 038919 423 GIGVLIEKSLLTIC 436 (483)
Q Consensus 423 ~l~~L~~~sLi~~~ 436 (483)
.+..|.+.|||+..
T Consensus 326 ~l~~L~~~gli~~~ 339 (384)
T 2qby_B 326 IISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHTTSEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 68899999999864
No 13
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=2e-15 Score=149.35 Aligned_cols=283 Identities=16% Similarity=0.098 Sum_probs=165.3
Q ss_pred HhhhchhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCChhHHHHHHHHHhhccc--ceeEEEEecccccccCCcHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG--CNDVRMIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
..|+||+.+++.+.+++... ....+.+.|+|++|+|||||++.+++.....+ ...+.+.+..... .. ..+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~---~~-~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID---TP-YRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC---SH-HHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC---CH-HHHHH
Confidence 57999999999999988742 33457899999999999999999999876553 2233333332221 11 34444
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCCH------HHHHHHhcCCCC-CCCCcEEEEEcCCHhH
Q 038919 219 QLISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHV------EQLRRLAGKRDW-FGPGSRIIITTRDEHL 289 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~~~~-~~~~~~iliTtR~~~~ 289 (483)
.++..+.........+.......+...+. +++.+||||+++.. +.+..+...... ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 44433211111111223444555555554 34899999999543 233343322211 1345667888876543
Q ss_pred HhhCC-------CcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhC---CChHHHHHHHHHhC------
Q 038919 290 LKLHR-------VEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAG---GLPLALKVLGSFLF------ 353 (483)
Q Consensus 290 ~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~la~~l~------ 353 (483)
..... ....+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+.....
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 22211 124799999999999999987653211111223456677888887 99985443332221
Q ss_pred C---CCHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCCC-C---CCHHHH----HHHHHh---CC--
Q 038919 354 G---RPVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFFK-G---EKRDYV----SKILDS---CG-- 417 (483)
Q Consensus 354 ~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~-~---~~~~~l----~~~~~~---~~-- 417 (483)
+ -+...+..++.... ...+..++..+++.++.++..++.+.. + ++...+ ..+... ..
T Consensus 256 ~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~ 328 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVT 328 (386)
T ss_dssp TCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCC
Confidence 1 13444444444332 245677788999999999988885432 2 233222 222222 22
Q ss_pred -CChhhhHHHHhhCCceeEe
Q 038919 418 -FEPVIGIGVLIEKSLLTIC 436 (483)
Q Consensus 418 -~~~~~~l~~L~~~sLi~~~ 436 (483)
......++.|.+.|+|+..
T Consensus 329 ~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 329 QRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 1234578999999999864
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=8.3e-15 Score=145.13 Aligned_cols=305 Identities=14% Similarity=0.094 Sum_probs=180.9
Q ss_pred HhhhchhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
+.++||+.+++.+..++.. ..+..+.+.|+|++|+|||||++.+++.........+.+.+.... .....+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~----~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY----RNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC----CSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC----CCHHHHHH
Confidence 4799999999999998865 222234899999999999999999999876542222333332221 12255566
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCC--HHHHHHHhcCCCCCC----CCcEEEEEcCCHhHH
Q 038919 219 QLISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAH--VEQLRRLAGKRDWFG----PGSRIIITTRDEHLL 290 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~--~~~~~~l~~~~~~~~----~~~~iliTtR~~~~~ 290 (483)
.++..+.........+.......+...+. +++.+||||+++. .+.+..+...+.... .+..+|++|++....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 66655432211112234444455555544 5689999999965 455555544433211 467788887765432
Q ss_pred hhCC-------CcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHh---------CCChHHHHHHHHHhC-
Q 038919 291 KLHR-------VEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYA---------GGLPLALKVLGSFLF- 353 (483)
Q Consensus 291 ~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~la~~l~- 353 (483)
.... ....+.+++++.++..+++...+...........+..+.+++.+ +|+|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 2211 12368999999999999998876431111122346778899999 799866654433321
Q ss_pred -----C---CCHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCC---C--CCCHHHHHHHHHh----C
Q 038919 354 -----G---RPVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFF---K--GEKRDYVSKILDS----C 416 (483)
Q Consensus 354 -----~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~---~--~~~~~~l~~~~~~----~ 416 (483)
+ -+............. .. +...+..|++..+.++..++.+. . .++...+...+.. .
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~---~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF---GI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEY 325 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC---CC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh---hh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHc
Confidence 1 123333333333321 11 23345678899999988888654 2 3454544433222 1
Q ss_pred CC------ChhhhHHHHhhCCceeEecC-------CeE-------EccHHHHHHHHHHHhhh
Q 038919 417 GF------EPVIGIGVLIEKSLLTICES-------DRL-------WMHDLLLEMGRQIVRRQ 458 (483)
Q Consensus 417 ~~------~~~~~l~~L~~~sLi~~~~~-------~~~-------~mH~lvr~~~~~~~~~~ 458 (483)
+. .....++.|.+.|+|..... |++ ..|++++.+...++.++
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 326 GERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 21 13357899999999987533 222 24677777766666554
No 15
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.64 E-value=5.1e-17 Score=138.55 Aligned_cols=84 Identities=18% Similarity=0.286 Sum_probs=75.5
Q ss_pred CchhhHHHHHHhC--CCcEeecCCCCCCCCCCchHHHHHhh-hcceEEEEeccccccchhhHHHHHHHHHHHhc-CCc-e
Q 038919 1 TFISHLYTALNDK--GIYVFRDDKQLEKGGSISPNLLKAIE-ESRISIIVLSRNYASSTWCLDELVKIVEYKNR-EDQ-I 75 (483)
Q Consensus 1 ~f~~~L~~~L~~~--gi~~f~d~~~~~~g~~~~~~l~~ai~-~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~-~~~-v 75 (483)
+|+.+|+.+|+++ |+++|+|++++.+|+++.++|.++|+ +|+++|+|+|++|++|.||+.|+..++.+... ++. |
T Consensus 29 ~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~v 108 (160)
T 2js7_A 29 QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRL 108 (160)
T ss_dssp HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEE
Confidence 4899999999995 69999999999999999999999999 79999999999999999999999999987532 334 9
Q ss_pred EeeeecccC
Q 038919 76 FPIFYDVEP 84 (483)
Q Consensus 76 ~Pvf~~v~p 84 (483)
|||||+..+
T Consensus 109 IpV~~~~~~ 117 (160)
T 2js7_A 109 IPIKYKAMK 117 (160)
T ss_dssp EEEESSCCC
T ss_pred EEEEEcccc
Confidence 999998653
No 16
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=134.59 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=75.2
Q ss_pred CchhhHHH-HHH-hCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccc-cchhhHHHHHHHHHHH-hcCCc-e
Q 038919 1 TFISHLYT-ALN-DKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYA-SSTWCLDELVKIVEYK-NREDQ-I 75 (483)
Q Consensus 1 ~f~~~L~~-~L~-~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~-~s~~cl~El~~~~~~~-~~~~~-v 75 (483)
+|+.||+. .|+ +.|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+ .|.||+.|+..++.+. ..++. |
T Consensus 26 ~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~v 105 (159)
T 1t3g_A 26 RFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKV 105 (159)
T ss_dssp HHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEE
Confidence 38889776 699 799999999999999999999999999999999999999997 9999999999999886 44456 9
Q ss_pred EeeeecccC
Q 038919 76 FPIFYDVEP 84 (483)
Q Consensus 76 ~Pvf~~v~p 84 (483)
||||+...+
T Consensus 106 I~I~~~~~~ 114 (159)
T 1t3g_A 106 ILIECSELR 114 (159)
T ss_dssp EEEECSCCC
T ss_pred EEEEecccc
Confidence 999988544
No 17
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=4.1e-14 Score=139.92 Aligned_cols=282 Identities=14% Similarity=0.079 Sum_probs=167.8
Q ss_pred HhhhchhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCChhHHHHHHHHHhhccc-----ceeEEEEecccccccCCcHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG--CNDVRMIGIWGMGGLGKTTLARVVYDLISHEF-----DGSSFLADVKEKYDKEGSVIS 215 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 215 (483)
..|+||+.+++.+..++... ....+.+.|+|++|+|||+||+.+++...... ...+.+.+.... . ....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~-~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR---E-TPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS---C-SHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC---C-CHHH
Confidence 57999999999999988542 34467899999999999999999998775432 333333333222 1 2256
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCCHH-------HHHHHhcCCCCC--CCCcEEEEEc
Q 038919 216 LQKQLISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHVE-------QLRRLAGKRDWF--GPGSRIIITT 284 (483)
Q Consensus 216 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~~l~~~~~~~--~~~~~iliTt 284 (483)
+...++..+.........+.......+...+. +++++||||+++... .+..+....... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 66666666533222222234444555666653 468899999997543 233333322111 3456777777
Q ss_pred CCHhH--------HhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhC---CChHHHHHHHHH-h
Q 038919 285 RDEHL--------LKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAG---GLPLALKVLGSF-L 352 (483)
Q Consensus 285 R~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~la~~-l 352 (483)
+.... .... ....+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+... .
T Consensus 175 ~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp SCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 75522 1111 114789999999999999988753210011111245677888888 999443322221 1
Q ss_pred ---C--C---CCHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCCCC---CCHHHHHH----HHHhCC
Q 038919 353 ---F--G---RPVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFFKG---EKRDYVSK----ILDSCG 417 (483)
Q Consensus 353 ---~--~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~---~~~~~l~~----~~~~~~ 417 (483)
. + -+...+..++.... ...+..++..|++.++.++..++.+..+ +....+.+ +....+
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG 326 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Confidence 1 1 23455555555442 2346677899999999998888754333 33332222 222222
Q ss_pred C------ChhhhHHHHhhCCceeEe
Q 038919 418 F------EPVIGIGVLIEKSLLTIC 436 (483)
Q Consensus 418 ~------~~~~~l~~L~~~sLi~~~ 436 (483)
. .....++.|...|+++..
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 327 LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 234568899999999874
No 18
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.61 E-value=3.5e-17 Score=138.15 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=73.6
Q ss_pred Cchhh-HHHHHHhC--CCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHH-HhcCCc-e
Q 038919 1 TFISH-LYTALNDK--GIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEY-KNREDQ-I 75 (483)
Q Consensus 1 ~f~~~-L~~~L~~~--gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~-~~~~~~-v 75 (483)
+|+.| |+.+|+++ |+++|+|++++.+|+++.++|.+||++|+++|+|+||+|+.|.||+.|+..++.+ ...++. |
T Consensus 18 ~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~v 97 (149)
T 1fyx_A 18 YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAA 97 (149)
T ss_dssp HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCC
T ss_pred HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEE
Confidence 37887 99999987 9999999999999999999999999999999999999999999999999988753 334456 9
Q ss_pred Eeeeecc
Q 038919 76 FPIFYDV 82 (483)
Q Consensus 76 ~Pvf~~v 82 (483)
|||||+.
T Consensus 98 Ipv~~~~ 104 (149)
T 1fyx_A 98 ILILLEP 104 (149)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 9999973
No 19
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.60 E-value=9.8e-17 Score=138.94 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=71.3
Q ss_pred Cchh-hHHHHHHh--CCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHH-hcCCc-e
Q 038919 1 TFIS-HLYTALND--KGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYK-NREDQ-I 75 (483)
Q Consensus 1 ~f~~-~L~~~L~~--~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~-~~~~~-v 75 (483)
+|+. +|+.+|++ +|+++|+|++++.+|+++.++|.+||++|+++|+|+||+|++|.||+.|+..++.+. ..+++ |
T Consensus 48 ~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~v 127 (178)
T 2j67_A 48 LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHI 127 (178)
T ss_dssp HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CE
T ss_pred HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEE
Confidence 3786 59999999 899999999999999999999999999999999999999999999999999998643 33455 9
Q ss_pred EeeeecccC
Q 038919 76 FPIFYDVEP 84 (483)
Q Consensus 76 ~Pvf~~v~p 84 (483)
|||||+.-|
T Consensus 128 IpV~~~~i~ 136 (178)
T 2j67_A 128 ILILLEPIP 136 (178)
T ss_dssp EEEESSCCC
T ss_pred EEEEecCCC
Confidence 999998433
No 20
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.45 E-value=3.1e-12 Score=117.63 Aligned_cols=196 Identities=18% Similarity=0.128 Sum_probs=118.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
..++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.+...+..... . .... ... ..+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~-------~~~~-~~~-~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-P-------CGVC-DNC-REIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-C-------CSCS-HHH-HHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-------Cccc-HHH-HHHhc
Confidence 579999999999999987542 23588999999999999999999877543311000 0 0000 000 00000
Q ss_pred H----HhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHhHHh
Q 038919 223 D----LLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEHLLK 291 (483)
Q Consensus 223 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~ 291 (483)
. +........... .....+.+.+ .+++.+|||||++. ...+..+...+.....+..+|+||+......
T Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETTCGGGH-HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCcccccH-HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0 000000000001 1111111111 24679999999964 4555555544433356788888887653211
Q ss_pred --hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 038919 292 --LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL 352 (483)
Q Consensus 292 --~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l 352 (483)
.......+.+++++.++..+++...+...... ...+..+.+++.++|+|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11224579999999999999998877543222 223567889999999999998776544
No 21
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.38 E-value=9.8e-12 Score=112.58 Aligned_cols=184 Identities=13% Similarity=0.118 Sum_probs=113.8
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
..++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++.+... +...+...+... .. . .......+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---ER-G-IDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC---TT-C-HHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc---cc-C-hHHHHHHH
Confidence 579999999999999998542 2348999999999999999999876433 232233222211 11 1 11111212
Q ss_pred HHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHhHHh--hCCCcc
Q 038919 222 SDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEHLLK--LHRVEE 297 (483)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~~~~--~~~~~~ 297 (483)
........ ...+++.+|||||++.. .....+...+.....++.+|+||+...... ......
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 22111100 01256889999999643 334444333332356778888887653211 112234
Q ss_pred eEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 038919 298 VFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGS 350 (483)
Q Consensus 298 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~ 350 (483)
.+.+++++.++..+++...+...... ...+....+++.++|+|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78999999999999998876432221 2235677889999999997654433
No 22
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=6.4e-11 Score=113.86 Aligned_cols=184 Identities=14% Similarity=0.221 Sum_probs=112.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
..++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+... +...+...+... ..+ ......++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---~~~--~~~i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD---DRG--IDVVRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS---CCS--HHHHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc---ccC--hHHHHHHH
Confidence 579999999999999988543 2338999999999999999999886432 222222222111 111 11122222
Q ss_pred HHHhcccCCCccchhhhHHHHHHHH-hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHhHH-h-hCCCc
Q 038919 222 SDLLKLADNSIRNVYDGINMIGRRL-RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEHLL-K-LHRVE 296 (483)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~~~-~-~~~~~ 296 (483)
..+..... .+ .+++.++|+||++. ......+...+.....++.+|+||....-. . .....
T Consensus 94 ~~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 94 KHFAQKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22111000 01 34588999999975 333333333322224677888888764321 1 11234
Q ss_pred ceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHH-HHHHHH
Q 038919 297 EVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLA-LKVLGS 350 (483)
Q Consensus 297 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~la~ 350 (483)
..+++.+++.++..+++...+...... ...+....+++.++|+|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 579999999999999998876432211 2235678899999999954 444433
No 23
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=4.8e-10 Score=107.91 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=112.3
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
..++|++..++.+..++..+ ..+.+.|+|++|+|||++|+.+++.+... +...+...+...... .......+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-----INVIREKV 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-----HHTTHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-----hHHHHHHH
Confidence 56999999999999998864 33348999999999999999999886432 111122222111000 00001111
Q ss_pred HHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHhHH-hh-CCCcc
Q 038919 222 SDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEHLL-KL-HRVEE 297 (483)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~~~-~~-~~~~~ 297 (483)
........ ...+++.++|+||++. .+....+...+.....++++|+||...... .. .....
T Consensus 98 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 98 KEFARTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHhhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 11100000 0125678999999964 344444443333335677888888765321 11 11234
Q ss_pred eEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 298 VFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 298 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
.+.+.+++.++..+++...+..... ....+..+.+++.++|+|..+..+...
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 7899999999999999887643322 123466788999999999876554433
No 24
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.15 E-value=2.1e-09 Score=103.27 Aligned_cols=254 Identities=20% Similarity=0.104 Sum_probs=145.6
Q ss_pred HhhhchhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA---GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..|+|++..++.+..++.. .......+.|+|++|+|||+||+.+++..... +.+.+.... .....+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~----~~~~~~~~~----~~~~~l~-- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN----LRVTSGPAI----EKPGDLA-- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC----EEEECTTTC----CSHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC----EEEEecccc----CChHHHH--
Confidence 5799999999998887753 11234578999999999999999999876432 222222111 1101111
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCC------------------CCCcE
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWF------------------GPGSR 279 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~~~~ 279 (483)
.. +... ..++.+|+||+++.. .....+...+... .++..
T Consensus 82 --~~------------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 --AI------------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp --HH------------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred --HH------------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11 0000 135679999999753 2333332111100 12456
Q ss_pred EEEEcCCHhHHh-h-C-CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCC-
Q 038919 280 IIITTRDEHLLK-L-H-RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGR- 355 (483)
Q Consensus 280 iliTtR~~~~~~-~-~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~- 355 (483)
+|.||....... . . .....+.+++++.++..+++...+...... ...+....++++++|+|..+..+...+...
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 666666432111 1 1 122578999999999999998876443221 234667889999999999887776554321
Q ss_pred --------CHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCC--CCCCHHHHHHHHHhCCCChhhhHH
Q 038919 356 --------PVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFF--KGEKRDYVSKILDSCGFEPVIGIG 425 (483)
Q Consensus 356 --------~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l~ 425 (483)
+.......+..+ ......+++.++..+..+.... +.+....+...+..+.......++
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~ 286 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHE 286 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTH
T ss_pred HHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 122222222221 2223567777777777665432 335666666655332222222233
Q ss_pred H-HhhCCceeEecCCeE
Q 038919 426 V-LIEKSLLTICESDRL 441 (483)
Q Consensus 426 ~-L~~~sLi~~~~~~~~ 441 (483)
. +++.++|+..+.|+.
T Consensus 287 ~~~i~~~li~~~~~g~~ 303 (324)
T 1hqc_A 287 PYLIRQGLLKRTPRGRV 303 (324)
T ss_dssp HHHHHTTSEEEETTEEE
T ss_pred HHHHHhcchhcCCccce
Confidence 3 888999988755543
No 25
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.09 E-value=3.9e-09 Score=101.09 Aligned_cols=184 Identities=12% Similarity=0.092 Sum_probs=114.0
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc-ccceeEEEEecccccccCCcHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH-EFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
...++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.. .+...+...+.......... ......+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 92 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-RHKIKEF 92 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS-SHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH-HHHHHHH
Confidence 367999999999999988754 2334899999999999999999987632 22222222222211110011 1111111
Q ss_pred HHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHhH-Hh-hCCCc
Q 038919 221 ISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEHL-LK-LHRVE 296 (483)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~~-~~-~~~~~ 296 (483)
. .... ...+++.++|+|+++. .+....+...+.....++.+|+||....- .. .....
T Consensus 93 ~----~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 93 A----RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp H----HSCC---------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred H----hcCC---------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 0 0000 0025678999999964 35556666666555567788888775431 11 11233
Q ss_pred ceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 038919 297 EVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 297 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la 349 (483)
..+++.+++.++..+++...+...... ...+....+++.++|++..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 579999999999999998876443322 234567888999999998665443
No 26
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.02 E-value=6.2e-09 Score=102.07 Aligned_cols=194 Identities=19% Similarity=0.136 Sum_probs=112.5
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
..++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ....+.... ...+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~~-~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDN-CREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSHH-HHHHHT
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccHH-HHHHhc
Confidence 469999999999999987542 235789999999999999999998764322100 000000000 000000
Q ss_pred H----HhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHhH-H
Q 038919 223 D----LLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEHL-L 290 (483)
Q Consensus 223 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~~-~ 290 (483)
. +............. ...+.+.+ .+++.++|+||++. ......+...+.....+..+|++|.+..- .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred cCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0 00000000011111 12222222 24578999999964 34445554433333456777777764431 1
Q ss_pred -hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 038919 291 -KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGS 350 (483)
Q Consensus 291 -~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~ 350 (483)
........+++.+++.++..+++...+...... ...+.+..+++.++|+|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 111234678999999999999998766332211 2235678899999999998876543
No 27
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.2e-09 Score=99.03 Aligned_cols=170 Identities=12% Similarity=0.018 Sum_probs=99.5
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHH
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVI 214 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 214 (483)
..+.||+.|++.+...|.. ..+..+.+.|+|++|+|||++++.+++.+.... ...+...|.....+ . .
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t---~-~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG---M-D 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC------H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC---H-H
Confidence 4589999999999987764 234567899999999999999999999885432 11222233222222 2 5
Q ss_pred HHHHHHHHHHhcccCCCccchhhhHHHHHHHH---hcCceEEEEcCCCCH---HHHHHHhcCCCCCCCCcEEEEEcCCH-
Q 038919 215 SLQKQLISDLLKLADNSIRNVYDGINMIGRRL---RQKKVLLVIDDVAHV---EQLRRLAGKRDWFGPGSRIIITTRDE- 287 (483)
Q Consensus 215 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iliTtR~~- 287 (483)
.+...++.++.+.... .......+..+...+ .+++++++||+++.. +.+..++...........||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 96 ALYEKIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 6667777776543211 111222223233322 457899999999753 44444432111001222334334322
Q ss_pred --h-HH-----hhCCCcceEecCCCChHHHHHHHHHhhc
Q 038919 288 --H-LL-----KLHRVEEVFKLEALTYDEAFQLFCLKAF 318 (483)
Q Consensus 288 --~-~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 318 (483)
. .+ ..+ ....+.++|++.+|-.+++..++.
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11 111 124689999999999999988764
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.01 E-value=1e-08 Score=99.14 Aligned_cols=256 Identities=16% Similarity=0.089 Sum_probs=146.7
Q ss_pred HhhhchhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG---CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..++|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....| ...+.... .. ..-...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~----~~-~~~~~~ 99 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI----EK-SGDLAA 99 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC----CS-HHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc----cc-hhHHHH
Confidence 67999999999999887642 23345689999999999999999988764432 22211111 00 110111
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCC------------------CCCcE
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWF------------------GPGSR 279 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~~~~ 279 (483)
. +.. ..++.+|+||+++.. .....+...+... .++..
T Consensus 100 ~---------------------~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 100 I---------------------LTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp H---------------------HHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred H---------------------HHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 1 100 245679999999642 3333332211100 12355
Q ss_pred EEEEcCCHhHHh---hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh----
Q 038919 280 IIITTRDEHLLK---LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL---- 352 (483)
Q Consensus 280 iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l---- 352 (483)
+|.+|....... .......+.+++++.++..+++...+..... ....+....+++.+.|+|-.+..+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 666665432111 1123367999999999999999877643321 2234667888889999997665544332
Q ss_pred --CCC---CHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCC-CCCCHHHHHHHHHhCCCChhhhHH-
Q 038919 353 --FGR---PVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFF-KGEKRDYVSKILDSCGFEPVIGIG- 425 (483)
Q Consensus 353 --~~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~-~~~~~~~l~~~~~~~~~~~~~~l~- 425 (483)
.+. +.......+.. +..+...++..++.++..++-.. .......+...+..+.......++
T Consensus 235 ~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~ 302 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEP 302 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHH
T ss_pred HhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 111 12222222221 22233456666666776666552 224567776665433333333455
Q ss_pred HHhhCCceeEecCCeEEcc
Q 038919 426 VLIEKSLLTICESDRLWMH 444 (483)
Q Consensus 426 ~L~~~sLi~~~~~~~~~mH 444 (483)
.|++.++|.....|+..-.
T Consensus 303 ~l~~~gli~~~~~g~~~t~ 321 (338)
T 3pfi_A 303 YLLANGYIERTAKGRIASA 321 (338)
T ss_dssp HHHHTTSEEEETTEEEECH
T ss_pred HHHHcCceecCCCcccccH
Confidence 7899999998877766543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.94 E-value=4.7e-10 Score=122.13 Aligned_cols=84 Identities=15% Similarity=0.307 Sum_probs=73.2
Q ss_pred ch-hhHHHHHHh-----CCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHH-hcCCc
Q 038919 2 FI-SHLYTALND-----KGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYK-NREDQ 74 (483)
Q Consensus 2 f~-~~L~~~L~~-----~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~-~~~~~ 74 (483)
|+ .+|...||. .|+++|++++|+.+|+.+.+.|.+||++||.+|+|+|++|+.|.||..|+..++.+. .+++.
T Consensus 684 ~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~ 763 (844)
T 3j0a_A 684 WVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNS 763 (844)
T ss_dssp HHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCT
T ss_pred HHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCC
Confidence 44 568889985 699999999999999999999999999999999999999999999999999887654 34445
Q ss_pred -eEeeeecccCc
Q 038919 75 -IFPIFYDVEPT 85 (483)
Q Consensus 75 -v~Pvf~~v~p~ 85 (483)
+|||||+.-|.
T Consensus 764 ~~i~i~~~~~~~ 775 (844)
T 3j0a_A 764 ALIMVVVGSLSQ 775 (844)
T ss_dssp TEEEEESSCCCS
T ss_pred cEEEEEeccCCh
Confidence 99999986543
No 30
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.88 E-value=1.1e-08 Score=89.79 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=41.0
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46999999999999988753 3466899999999999999999987643
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.88 E-value=3.7e-08 Score=92.72 Aligned_cols=178 Identities=16% Similarity=0.199 Sum_probs=104.0
Q ss_pred HhhhchhHHHHHHHHHhhcC-----------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGAG-----------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.+++..... ++..+.......
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~~~-- 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELVKK-- 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGCCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHHHh--
Confidence 57999999999998876431 1234679999999999999999999876432 222222211111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhh-hHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCC--
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYD-GINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRD-- 272 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~-- 272 (483)
. ...... ....+.......+.+|+||+++.. ..+..++..+.
T Consensus 91 ~-------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 91 F-------------------IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp S-------------------TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred c-------------------cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0 000111 112222333456789999999643 22333332211
Q ss_pred CCCCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC-ChHHHH
Q 038919 273 WFGPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG-LPLALK 346 (483)
Q Consensus 273 ~~~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~ 346 (483)
....+..||.||....... .......+.+++++.++..+++...+.......+ .....++..+.| .|-.|.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHH
Confidence 1134567777887553221 1123357899999999999999887754332211 114566777777 455555
Q ss_pred HH
Q 038919 347 VL 348 (483)
Q Consensus 347 ~l 348 (483)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.86 E-value=8.9e-08 Score=93.65 Aligned_cols=203 Identities=14% Similarity=0.045 Sum_probs=107.9
Q ss_pred HhhhchhHHHHHHH---HHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLK---FLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~---~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..|||++...+.+. ..+..+....+.+.|+|++|+|||+||+.+++.+....+. +..+................+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF--TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE--EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc--ccccchhhhhcccchhHHHHH
Confidence 57999999877654 4444443334689999999999999999999987643222 112221111111111233333
Q ss_pred HHHHHhccc--------------------CC----C-cc----chhhhHHHHHHHH-----hcC----ceEEEEcCCCC-
Q 038919 220 LISDLLKLA--------------------DN----S-IR----NVYDGINMIGRRL-----RQK----KVLLVIDDVAH- 260 (483)
Q Consensus 220 ll~~~~~~~--------------------~~----~-~~----~~~~~~~~l~~~l-----~~~----~~LlVlDdv~~- 260 (483)
.+....+.. .. . .. ........+.... .++ +.+|+||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 322211100 00 0 00 0111111121111 122 46999999964
Q ss_pred -HHHHHHHhcCCCCCCCCcEEEEEcCC------------H-hH-HhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCc
Q 038919 261 -VEQLRRLAGKRDWFGPGSRIIITTRD------------E-HL-LKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPRE 325 (483)
Q Consensus 261 -~~~~~~l~~~~~~~~~~~~iliTtR~------------~-~~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 325 (483)
.+....+...+...... .++++|.. . .+ .........+.+++++.++..+++...+......
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~-- 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE-- 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC--
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC--
Confidence 34444454444332223 34444421 0 00 0111223458999999999999998876543222
Q ss_pred hHHHHHHHHHHHhC-CChHHHHHHHH
Q 038919 326 EYVHLSQLVVNYAG-GLPLALKVLGS 350 (483)
Q Consensus 326 ~~~~~~~~i~~~~~-G~PLal~~la~ 350 (483)
...+....+++.+. |+|..+..+..
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 23466788899998 88876655443
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.81 E-value=9.6e-09 Score=93.98 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=99.3
Q ss_pred Hhhhchh---HHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIE---SRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~---~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..|+|.. ..++.+..+.... ..+.+.|+|++|+|||+||+.+++..........++. ....... .
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~------- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S------- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C-------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H-------
Confidence 4577633 5566666666533 3578999999999999999999998765433333332 2221110 0
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-------HHHHHHhcCCCCCCCC-cEEEEEcCCHh---
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-------EQLRRLAGKRDWFGPG-SRIIITTRDEH--- 288 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------~~~~~l~~~~~~~~~~-~~iliTtR~~~--- 288 (483)
. ... .. -.++.+|||||++.. +.+..++.... ..+ .++|+||+...
T Consensus 96 -------------~---~~~----~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~--~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 96 -------------T---ALL----EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA--EQKRGSLIVSASASPMEA 152 (242)
T ss_dssp -------------G---GGG----TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH--HHCSCEEEEEESSCTTTT
T ss_pred -------------H---HHH----Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCCeEEEEcCCCHHHH
Confidence 0 000 00 134679999999532 12222221111 122 24777776321
Q ss_pred ------HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 038919 289 ------LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGS 350 (483)
Q Consensus 289 ------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~ 350 (483)
+.........+.+++++.++..+++...+...... ...+....+++.++|++-.+..+..
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 11111112678999999999999998876432221 2246678899999999887765543
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=1.3e-07 Score=96.56 Aligned_cols=186 Identities=16% Similarity=0.184 Sum_probs=103.5
Q ss_pred HhhhchhHHHHHHHHHhhcC---------------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccccc
Q 038919 143 KELVGIESRLEKLKFLMGAG---------------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKY 207 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 207 (483)
..++|++..++.+.+++... .+..+.+.|+|++|+|||++|+.+++... ..+...+....
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s~~- 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNASDV- 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTTSC-
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCCCc-
Confidence 67999999999999988641 01246899999999999999999999772 22222222211
Q ss_pred ccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--------HHHHHHhcCCCCCCCCcE
Q 038919 208 DKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--------EQLRRLAGKRDWFGPGSR 279 (483)
Q Consensus 208 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~~~~l~~~~~~~~~~~~ 279 (483)
.. .......+....... .....-..... .....+++.+|+||+++.. ..+..++.. .+..
T Consensus 114 ---~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~~ 181 (516)
T 1sxj_A 114 ---RS-KTLLNAGVKNALDNM--SVVGYFKHNEE-AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TSTP 181 (516)
T ss_dssp ---CC-HHHHHHTGGGGTTBC--CSTTTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSSC
T ss_pred ---ch-HHHHHHHHHHHhccc--cHHHHHhhhhh-hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCCC
Confidence 11 222222211111100 00000000000 0001357889999999532 334444332 2334
Q ss_pred EEEEcCCHh---HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 038919 280 IIITTRDEH---LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKV 347 (483)
Q Consensus 280 iliTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 347 (483)
||+++.+.. +.........+.+++++.++..+++...+....... ..+....|++.++|++-.+..
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHH
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHH
Confidence 555444321 222223345789999999999999877664322111 124577889999997654433
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=9.8e-08 Score=92.70 Aligned_cols=192 Identities=11% Similarity=0.109 Sum_probs=109.2
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc--ccceeEEEEecccccccCCcHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH--EFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
..++|++..++.+..++..+.. +.+.|+|++|+||||+|+.+++.+.. .+...+...+... ..+ .....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~--~~~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD---ERG--ISIVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS---CCC--HHHHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc---ccc--hHHHHHH
Confidence 5799999999999999875432 33899999999999999999987642 1222222222211 111 1222222
Q ss_pred HHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHhH-Hhh-CCCc
Q 038919 221 ISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEHL-LKL-HRVE 296 (483)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~~-~~~-~~~~ 296 (483)
............... .........+.+|++|+++. ......+...+.......++|++|....- ... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222111100000000 00001123557999999964 33333343333222456677777654421 111 1122
Q ss_pred ceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 297 EVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 297 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
..+.+.+++.++..+.+...+...... ...+..+.+++.++|+|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999999998876433221 22466888999999999875544
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.76 E-value=4e-07 Score=84.99 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=80.8
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
...+.+.|+|++|+|||+||+.+++.....| ...+... ...+..... ........+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~----~~i~~~~--~~~g~~~~~-----------------~~~~~~~~~~ 118 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPF----IKICSPD--KMIGFSETA-----------------KCQAMKKIFD 118 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSE----EEEECGG--GCTTCCHHH-----------------HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCE----EEEeCHH--HhcCCchHH-----------------HHHHHHHHHH
Confidence 3467899999999999999999999753321 1111111 000000000 0011111222
Q ss_pred HHHhcCceEEEEcCCCCH---------------HHHHHHhcCCCCCCCCcEEEEEcCCHhHHhh---C-CCcceEecCCC
Q 038919 244 RRLRQKKVLLVIDDVAHV---------------EQLRRLAGKRDWFGPGSRIIITTRDEHLLKL---H-RVEEVFKLEAL 304 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~~---------------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~---~-~~~~~~~l~~L 304 (483)
.....++.+|+||+++.. ..+..+.......+....||.||..+..+.. . .....+.++++
T Consensus 119 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 119 DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred HHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 233466889999998643 2233333332222334556778877654433 1 12456899999
Q ss_pred Ch-HHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC
Q 038919 305 TY-DEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG 340 (483)
Q Consensus 305 ~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 340 (483)
+. ++..+++.... .. ..+....+++.+.|
T Consensus 199 ~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 199 ATGEQLLEALELLG---NF----KDKERTTIAQQVKG 228 (272)
T ss_dssp EEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcC
Confidence 98 66666665432 11 13456778888887
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.74 E-value=5.1e-07 Score=83.64 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=100.8
Q ss_pred HhhhchhHHHHHHHHHhhc---C-------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA---G-------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+...+.+.+++.. . ....+.+.|+|++|+|||+||+.+++..... ++..+.........-
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~----~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP----FLAMAGAEFVEVIGG 81 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC----EEEEETTTTSSSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHhhccC
Confidence 4578888887777665421 1 1234568899999999999999999976433 222222221111000
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-----------------HHHHHHhcCCCC--
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-----------------EQLRRLAGKRDW-- 273 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~-- 273 (483)
.........+.......+.+|+||+++.. ..+..++..+..
T Consensus 82 --------------------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 82 --------------------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp --------------------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred --------------------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 00111112233333456899999999754 122333322111
Q ss_pred CCCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHH
Q 038919 274 FGPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKV 347 (483)
Q Consensus 274 ~~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 347 (483)
...+..||.||........ ......+.+++.+.++-.+++...+....... ........+++.+.|.+- .|..
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHH
Confidence 1235566667765432211 12335788999999999999988764433222 222234677888887754 5554
Q ss_pred HHH
Q 038919 348 LGS 350 (483)
Q Consensus 348 la~ 350 (483)
+..
T Consensus 221 l~~ 223 (262)
T 2qz4_A 221 ICN 223 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 38
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=1.1e-07 Score=92.53 Aligned_cols=196 Identities=11% Similarity=0.046 Sum_probs=104.7
Q ss_pred HhhhchhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecc-----------------
Q 038919 143 KELVGIESRLEKLKFLM-GAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVK----------------- 204 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------------- 204 (483)
..++|.+..++.+.+++ ..+. ... +.|+|++|+||||+++.++..+.....+.+.+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 67999999999999888 5332 233 899999999999999999986532222211111000
Q ss_pred ---c-ccccCCc-HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCC
Q 038919 205 ---E-KYDKEGS-VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPG 277 (483)
Q Consensus 205 ---~-~~~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~ 277 (483)
. .....+. ......+.+..+...... .... .+ ..+.+++-++|||+++.. .....+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0 0000000 000111222221110000 0000 00 002346779999999643 3333333322222456
Q ss_pred cEEEEEcCCHh-HHh-hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchH-HHHHHHHHHHhCCChHHHHHHH
Q 038919 278 SRIIITTRDEH-LLK-LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEY-VHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 278 ~~iliTtR~~~-~~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~la 349 (483)
+.+|++|.+.. +.. .......+++++++.++..+.+...+...... .. .+.+..|++.++|++..+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 77887776532 111 11233679999999999999998776432211 11 2567889999999997665443
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.72 E-value=6.8e-07 Score=86.89 Aligned_cols=182 Identities=11% Similarity=0.035 Sum_probs=104.5
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... .++..+........
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~~~-- 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA----TFFSISASSLTSKW-- 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC----EEEEEEGGGGCCSS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC----eEEEEehHHhhccc--
Confidence 5799999999999887642 1123567999999999999999999987532 23333332221110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHH-HHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCC----CCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGIN-MIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKR----DWF 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~----~~~ 274 (483)
......... .+......++.+|+||+++.. .....++..+ ...
T Consensus 158 -------------------~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 158 -------------------VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred -------------------cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 000111111 122222357889999999532 1122222211 111
Q ss_pred CCCcEEEEEcCCHhHHh---hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC-ChHHHHHHHH
Q 038919 275 GPGSRIIITTRDEHLLK---LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG-LPLALKVLGS 350 (483)
Q Consensus 275 ~~~~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~la~ 350 (483)
..+..||.||.....+. .......+.++..+.++..+++...+...... ...+....+++.+.| .+-.|..+..
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23455666666432111 11233467899999999999988776432211 123567788888988 5666766654
Q ss_pred H
Q 038919 351 F 351 (483)
Q Consensus 351 ~ 351 (483)
.
T Consensus 297 ~ 297 (357)
T 3d8b_A 297 E 297 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.71 E-value=1.2e-07 Score=94.88 Aligned_cols=183 Identities=17% Similarity=0.138 Sum_probs=103.2
Q ss_pred Hhhh-chhHHH--HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccccee-EEEEecccccccCCcHHHHHH
Q 038919 143 KELV-GIESRL--EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGS-SFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 143 ~~~v-GR~~~l--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~ 218 (483)
..|| |....+ ..+........ ....+.|+|++|+||||||+.+++.+...++.. +.+.+. ..+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHH
Confidence 4566 654433 23333333322 256899999999999999999999876554322 222211 22223
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----HHHHHHhcCCCC-CCCCcEEEEEcCCH------
Q 038919 219 QLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----EQLRRLAGKRDW-FGPGSRIIITTRDE------ 287 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~~~~iliTtR~~------ 287 (483)
.+...+... ....+...++.++.+|+|||++.. ...+.++..+.. ...|..||+||.+.
T Consensus 174 ~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 174 DLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 333332111 112233344446789999999432 222222221110 13567888888763
Q ss_pred ---hHHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 288 ---HLLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 288 ---~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
.+...+.....+.+++++.++-.+++...+...... ...+....|+..++|++--+..+
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 122222233568899999999999998876432211 11244677889999999766544
No 41
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.69 E-value=1.3e-07 Score=90.10 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=88.2
Q ss_pred hhhchhHHHHHHHHHhhc-------------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc---eeEEEEeccccc
Q 038919 144 ELVGIESRLEKLKFLMGA-------------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD---GSSFLADVKEKY 207 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~-------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~ 207 (483)
.++|.+...+.+.+.+.. .......+.|+|++|+|||+||+.+++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 588888888887765431 1233457999999999999999999987654321 122222221111
Q ss_pred ccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCC-----------CHHHHHHHhcCCCCCCC
Q 038919 208 DKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVA-----------HVEQLRRLAGKRDWFGP 276 (483)
Q Consensus 208 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~ 276 (483)
.. . . ..........+.. .++.+|+||+++ +......|+..+.....
T Consensus 112 ~~--~------------~------g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 112 GQ--Y------------I------GHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp CS--S------------T------TCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred hh--c------------c------cccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 00 0 0 0000111111111 135699999997 44445555544433345
Q ss_pred CcEEEEEcCCHhH----------HhhCCCcceEecCCCChHHHHHHHHHhhcc
Q 038919 277 GSRIIITTRDEHL----------LKLHRVEEVFKLEALTYDEAFQLFCLKAFE 319 (483)
Q Consensus 277 ~~~iliTtR~~~~----------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 319 (483)
+..+|+||..... ... ....+.+++++.++-.+++...+..
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 6777777764321 111 2357899999999999999877643
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.69 E-value=6.9e-07 Score=85.56 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=105.4
Q ss_pred HhhhchhHHHHHHHHHhh----------cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMG----------AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+...+.|.+.+. ......+-+.|+|++|+|||+||+.+++..... ++..+....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l------ 87 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDL------ 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHH------
Confidence 579999999999988762 111224579999999999999999999876433 222222111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHH-HHHHHHhcCceEEEEcCCCCH-------------HHHHHHh---cCCCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGIN-MIGRRLRQKKVLLVIDDVAHV-------------EQLRRLA---GKRDWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~---~~~~~~~ 275 (483)
.... ......... .+......++.+|+||+++.. .....++ ..+....
T Consensus 88 --------~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 88 --------VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp --------HTTT-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred --------hhcc-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 0000 011111222 222233457789999999632 1122222 2221123
Q ss_pred CCcEEEEEcCCHhHHhh---CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC-ChHHHHHHHHH
Q 038919 276 PGSRIIITTRDEHLLKL---HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG-LPLALKVLGSF 351 (483)
Q Consensus 276 ~~~~iliTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~la~~ 351 (483)
.+..||.||..+..+.. ......+.++..+.++-.+++..++...... ........+++.+.| .+-.|..+...
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45666667765432110 1234567899999999999999887543322 122456778888877 45556555443
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.66 E-value=1.6e-07 Score=93.71 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=103.1
Q ss_pred HhhhchhHHH---HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRL---EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..+||.+..+ ..|...+..+ ..+.+.|+|++|+||||||+.+++.....|. ..+. ...+. .. ...
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a----~~~~~-~~-ir~ 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE----RISA----VTSGV-KE-IRE 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEET----TTCCH-HH-HHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEe----ccCCH-HH-HHH
Confidence 5688998888 6777777754 3468999999999999999999997654321 1111 11111 11 111
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEE-EcCCHhH---HhhC
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIII-TTRDEHL---LKLH 293 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ili-TtR~~~~---~~~~ 293 (483)
++... ......+++.+|+||+++.. .+.+.|+..+.. ....+|. ||.+... ....
T Consensus 94 ~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 94 AIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 11110 01112467889999999643 333333333321 2233443 5555421 1112
Q ss_pred CCcceEecCCCChHHHHHHHHHhhccCC-----CCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 294 RVEEVFKLEALTYDEAFQLFCLKAFETQ-----KPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
....++.+.+++.++..+++...+.... .......+..+.+++.++|++-.+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2345789999999999999988764311 112234567788999999998766544
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.65 E-value=1.4e-06 Score=84.44 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=102.7
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+...+.|.+.+.. .....+-+.|+|++|+|||+||+.+++..... ++..+...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~------- 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSD------- 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHH-------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHH-------
Confidence 5799999999998886621 11123468899999999999999999977432 22222111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHH-HHHHHhcCceEEEEcCCCCHH-------------HHHHHhcC---CCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINM-IGRRLRQKKVLLVIDDVAHVE-------------QLRRLAGK---RDWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~---~~~~~ 275 (483)
+. ... .......... +......++.+|+||+++... ....++.. +....
T Consensus 120 ---l~--------~~~---~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 120 ---LV--------SKW---MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---HH--------SCC------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---Hh--------hhh---cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 10 000 0011111222 222234578999999996421 12222221 11113
Q ss_pred CCcEEEEEcCCHh-----HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC-ChHHHHHHH
Q 038919 276 PGSRIIITTRDEH-----LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG-LPLALKVLG 349 (483)
Q Consensus 276 ~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~la 349 (483)
.+..||.||..+. +.. .....+.++..+.++-.+++..++...... ........|++.+.| .+-.|..+.
T Consensus 186 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556666776442 222 344678899999999999998877443221 113456778888888 455565554
Q ss_pred H
Q 038919 350 S 350 (483)
Q Consensus 350 ~ 350 (483)
.
T Consensus 262 ~ 262 (355)
T 2qp9_X 262 K 262 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.64 E-value=2.7e-06 Score=81.34 Aligned_cols=183 Identities=16% Similarity=0.099 Sum_probs=103.5
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++..+.......
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~--- 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK--- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh---
Confidence 5688999888888875521 1122467999999999999999999987621 12222222211110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHH-HHHHHhcCceEEEEcCCCCH-------------HHHHHHhcC---CCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINM-IGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGK---RDWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~---~~~~~ 275 (483)
........... +......++.+|+||+++.. .....++.. +....
T Consensus 86 ------------------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 86 ------------------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp ------------------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 00011111122 22223467899999999654 112223222 11113
Q ss_pred CCcEEEEEcCCHhHHh---hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHHH
Q 038919 276 PGSRIIITTRDEHLLK---LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL-PLALKVLGSF 351 (483)
Q Consensus 276 ~~~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~la~~ 351 (483)
.+..||.||..+.... .......+.++..+.++-.+++..++...... ........|++.+.|. +-.|..+...
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4555666665432111 01334578899999999999998876433221 1234567788888887 5456655543
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.59 E-value=8.9e-07 Score=84.88 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=92.2
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCc
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSI 232 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 232 (483)
..+..+........+.+.|+|++|+||||||+.+++..... ...+...+. ..+...+...+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~----------~~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSA----------DDFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEH----------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEH----------HHHHHHHHHHHHcC-----
Confidence 33444444332234678999999999999999999987543 222222222 22222222222110
Q ss_pred cchhhhHHHHHHHHhcCceEEEEcCCCCH----HHHHHHhcCCCC-CCCCcEEEEEcCCHh---------HHhhCCCcce
Q 038919 233 RNVYDGINMIGRRLRQKKVLLVIDDVAHV----EQLRRLAGKRDW-FGPGSRIIITTRDEH---------LLKLHRVEEV 298 (483)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~ 298 (483)
. ...+...+ .++.+|+|||++.. ...+.+...+.. ...+..+|+|+.+.. +.........
T Consensus 88 -~----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 -T----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp -C----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred -c----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 1 11122223 24679999999542 112222211100 124567888776431 1122223356
Q ss_pred EecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 299 FKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 299 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
+.+++ +.++..+++...+...... ...+....+++.+ |++--+.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHHH
Confidence 89999 9999999998877432221 2245677888888 8876543
No 47
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.58 E-value=2e-06 Score=82.67 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHH----Hh
Q 038919 150 SRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISD----LL 225 (483)
Q Consensus 150 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~----~~ 225 (483)
...+.+.+.+..+ .-.+.+.++|++|+|||++|+.+++.+....... ....+. ......+... +.
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~~-c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKSCGH-CRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBCCSC-SHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---------CCCCCC-CHHHHHHhcCCCCCEE
Confidence 4455666666643 2246799999999999999999998765332110 000000 0000111000 00
Q ss_pred cccC---CCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHh-HHh-hC
Q 038919 226 KLAD---NSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEH-LLK-LH 293 (483)
Q Consensus 226 ~~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~-~~ 293 (483)
.... ......++. ..+.+.+ .+++-++|+|+++. .+....|+..+..-.+++.+|++|.++. +.. ..
T Consensus 78 ~~~~~~~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EECCCTTCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEeccccCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 0000 001111111 1222222 24567999999974 3444555544443355677777776653 221 12
Q ss_pred CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 294 RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
.....+++.+++.++..+++.... . ...+.+..+++.++|.|..+..+
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~---~----~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV---T----MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC---C----CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 344679999999999999998775 1 11245678899999999766443
No 48
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.57 E-value=2.7e-06 Score=83.74 Aligned_cols=182 Identities=14% Similarity=0.059 Sum_probs=101.5
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+..++.|..++.. .....+.+.|+|++|+|||+||+.++++... .++..+....... .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~--~ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSK--Y 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhcc--c
Confidence 6799999999999887621 0112467999999999999999999887543 2333322211110 0
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCC----CCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKR----DWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~----~~~~ 275 (483)
.+ .........+.......+.+|+||+++.. .....++..+ ....
T Consensus 189 ------------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 189 ------------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred ------------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 00011111122222456789999999643 1111222111 1112
Q ss_pred CCcEEEEEcCCHhHHh---hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHHHHH
Q 038919 276 PGSRIIITTRDEHLLK---LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKVLGS 350 (483)
Q Consensus 276 ~~~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~la~ 350 (483)
....||.||.....+. .......+.++..+.++-.+++...+...... ...+....+++.+.|..- .|..+..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666432211 11233468899999999999998776443222 223456788888888544 6665544
No 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.55 E-value=3.8e-06 Score=83.96 Aligned_cols=183 Identities=19% Similarity=0.150 Sum_probs=106.2
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++..+... +
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~------l 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD------L 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC--------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH------H
Confidence 6789999999988876621 1123467999999999999999999987621 1222222111 1
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCCCCC---CC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDWF---GP 276 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~~ 276 (483)
.....+. ..... ...+.......+.+|+||+++.. .....++..+... ..
T Consensus 205 --------~~~~~g~---~~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 205 --------VSKWLGE---SEKLV---KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ------------------CCCTH---HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred --------Hhhhcch---HHHHH---HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 0111111 11111 11222223467899999999754 2345565554432 34
Q ss_pred CcEEEEEcCCHhHHh---hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHH
Q 038919 277 GSRIIITTRDEHLLK---LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL-PLALKVLGS 350 (483)
Q Consensus 277 ~~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~la~ 350 (483)
+..||.||..+..+. .......+.++..+.++-.+++..++...... ........|++.+.|. +-.|..+..
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566776776543211 11234578889999999999998876433211 1234567788888884 555555543
No 50
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.55 E-value=1.9e-07 Score=81.39 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=40.9
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46999999999999988753 3456799999999999999999988754
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.52 E-value=4.4e-06 Score=78.88 Aligned_cols=179 Identities=14% Similarity=0.090 Sum_probs=102.0
Q ss_pred HhhhchhHHHHHHHHHhhcC----------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGAG----------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+..++.+.+.+... ....+.+.|+|++|+|||+||+.++...... ++..+........
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~----~~~i~~~~l~~~~-- 94 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT----FLNISAASLTSKY-- 94 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE----EEEEESTTTSSSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC----eEEeeHHHHhhcc--
Confidence 57999999999998876320 1124678999999999999999999876432 2222222111100
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHH-HHHHHHhcCceEEEEcCCCCH-------------HHHHHHhc---CCCC--
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGIN-MIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAG---KRDW-- 273 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~---~~~~-- 273 (483)
......... .+.......+.+|+||+++.. .....++. ....
T Consensus 95 -------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 95 -------------------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp -------------------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred -------------------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 001111111 122223457889999999532 11112221 1111
Q ss_pred CCCCcEEEEEcCCHh-----HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHH
Q 038919 274 FGPGSRIIITTRDEH-----LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKV 347 (483)
Q Consensus 274 ~~~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 347 (483)
.+.+..||.||..+. +.. .....+.++..+.++-..++...+...... ...+....+++.+.|++- .|..
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 123456666777542 222 233567888888888888887766433221 123457788889999875 6655
Q ss_pred HHH
Q 038919 348 LGS 350 (483)
Q Consensus 348 la~ 350 (483)
+..
T Consensus 232 l~~ 234 (297)
T 3b9p_A 232 LAK 234 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 52
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.52 E-value=7e-07 Score=85.61 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=101.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
..++|.+..++.+.+++..+. ...++.++|++|+|||++|+.+++.+.. .+...+.. ..+ .......+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~----~~~~i~~~----~~~--~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNA----DMMFVNGS----DCK--IDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTE----EEEEEETT----TCC--HHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCC----CEEEEccc----ccC--HHHHHHHHH
Confidence 579999999999999998542 3467888999999999999999987642 22222211 111 112222222
Q ss_pred HHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH---HHHHHHhcCCCCCCCCcEEEEEcCCHhHHhh--CCCcc
Q 038919 223 DLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV---EQLRRLAGKRDWFGPGSRIIITTRDEHLLKL--HRVEE 297 (483)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~--~~~~~ 297 (483)
....... ..+++.+|++|+++.. +....|...+.....++.+|+||....-... .....
T Consensus 95 ~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 95 NFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 2111100 0136789999999754 3444444333222356778888775431110 01224
Q ss_pred eEecCCCChHHHHHH-------HHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 298 VFKLEALTYDEAFQL-------FCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 298 ~~~l~~L~~~ea~~L-------~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
.+++++++.++-.++ +...+......- ...+....+++.++|++..+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHHH
Confidence 789999998874333 222222111111 112567778888999876443
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.50 E-value=6.7e-06 Score=77.83 Aligned_cols=175 Identities=13% Similarity=0.161 Sum_probs=99.4
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..++|.+...+.|.+++.. +-...+.+.|+|++|+|||+||+.+++..... .+..+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~~-------- 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKG-------- 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEECH--------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEEh--------
Confidence 4688999888888876542 12334679999999999999999999876422 222211
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHHH----------------HHHHhcCCCC--
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQ----------------LRRLAGKRDW-- 273 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~-- 273 (483)
..+. ....+.. . ......+.......+.+|+||+++.... ...++..+..
T Consensus 83 --~~l~----~~~~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 --PELL----TMWFGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp --HHHH----HHHHTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred --HHHH----hhhcCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 1221 2222211 1 1122233333446789999999975321 1222221111
Q ss_pred CCCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHH
Q 038919 274 FGPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLA 344 (483)
Q Consensus 274 ~~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 344 (483)
...+..||.||..+..+. .......+.++..+.++-.+++...+.......+. ....++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 123566777776553221 11234578999999999999988776433211111 123455567776643
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.50 E-value=1.7e-05 Score=76.25 Aligned_cols=257 Identities=19% Similarity=0.175 Sum_probs=134.4
Q ss_pred HhhhchhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG---CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. .... ........+ .
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~sg----~~~~~~~~l-~- 94 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTSG----PVLVKQGDM-A- 94 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEET----TTCCSHHHH-H-
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEec----hHhcCHHHH-H-
Confidence 57889888888887766532 123457999999999999999999997754321 1100 000000000 0
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCC--------C----------CCcE
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWF--------G----------PGSR 279 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~~~~ 279 (483)
. +...+ .++.++++|+++.. ...+.+...+... + +...
T Consensus 95 --------------------~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 95 --------------------A-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp --------------------H-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred --------------------H-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0 01111 23457778887532 2222221110000 0 1122
Q ss_pred EEE-EcCCHhHHhh--CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh----
Q 038919 280 III-TTRDEHLLKL--HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL---- 352 (483)
Q Consensus 280 ili-TtR~~~~~~~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l---- 352 (483)
++- |++...+... ........+++.+.++-.+++.+.+..... ....+.+..|++.+.|.|-.+..+...+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 333 4443222111 112235789999999999999887633222 1234668889999999997654443322
Q ss_pred --CCC---CHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCC--CCCCHHHHHHHHHhCCCChhhhHH
Q 038919 353 --FGR---PVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFF--KGEKRDYVSKILDSCGFEPVIGIG 425 (483)
Q Consensus 353 --~~~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l~ 425 (483)
.+. +......++..+. ..-..++...+.++..++-.. .+...+.+......+....+...+
T Consensus 231 ~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 111 1222223332221 111356666666665544332 234556666554332111222222
Q ss_pred -HHhhCCceeEecCCeEEccH
Q 038919 426 -VLIEKSLLTICESDRLWMHD 445 (483)
Q Consensus 426 -~L~~~sLi~~~~~~~~~mH~ 445 (483)
.|...|+|+....|+.....
T Consensus 299 ~~l~~~g~i~~~~~gr~~~~~ 319 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVTEK 319 (334)
T ss_dssp HHHHHTTSEEEETTEEEECHH
T ss_pred HHHHHcCCeecccccHHhhHH
Confidence 78899999998888865443
No 55
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6.7e-06 Score=79.78 Aligned_cols=172 Identities=17% Similarity=0.242 Sum_probs=100.6
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
.++.|.+...++|.+.+.. +-..++-+.++|+||+|||.||+++++.....| +..........
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk-- 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQK-- 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcc--
Confidence 6788999988888875431 223356689999999999999999999765543 33322221111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhH-HHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGI-NMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
. .......+ ..+...-...|++|++|+++.. ..+..++..+..+
T Consensus 222 ~-------------------vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 222 Y-------------------IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp S-------------------TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred c-------------------cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 0 01111111 1222233467999999999532 1233333322211
Q ss_pred --CCCcEEEEEcCCHh-----HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 --GPGSRIIITTRDEH-----LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 --~~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
..+..||.||..+. +......+..+.++..+.++-.++|+.+..+.....+. -...+++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv---dl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC---CHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC---CHHHHHHHCCCCC
Confidence 33455666776443 22223456789999999999999998776443222111 1456777787753
No 56
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1.2e-05 Score=77.61 Aligned_cols=180 Identities=13% Similarity=0.174 Sum_probs=103.2
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
..++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.++..+... +...+.-.+.. +..+. ..+ ...+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~---~~~~~-~~i-r~~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS---DDRGI-DVV-RNQI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT---SCCSH-HHH-HTHH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc---ccccH-HHH-HHHH
Confidence 56889999999999888854 22338999999999999999999876432 22112111111 11111 111 1111
Q ss_pred HHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHh-HHh-hCCCcc
Q 038919 222 SDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEH-LLK-LHRVEE 297 (483)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~-~~~~~~ 297 (483)
..+...... +.+.+-++|+|+++. .+....+...+......+.+|++|.... +.. ......
T Consensus 98 ~~~~~~~~~---------------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 98 KDFASTRQI---------------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHBCCS---------------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhhccc---------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 111100000 113467899999963 3333333332222245667777765442 111 112234
Q ss_pred eEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 298 VFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 298 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
.+.+.+++.++..+.+...+...... ...+..+.+++.++|.+--+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 78999999999999888766322211 223567789999999987543
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.46 E-value=1.1e-06 Score=88.58 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=82.7
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 216 (483)
+.+|||+.+++.+...+... ...-+.|+|++|+|||++|+.+++.+...+ ...++..+..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 56999999999999998753 234568999999999999999999875432 1122222111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhH---Hhh-
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHL---LKL- 292 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~---~~~- 292 (483)
....+. ... .....+...-...+.+|++| ...+....|.+.+. ....++|.+|..... ...
T Consensus 246 -----~~~~g~---~e~---~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 -----TKYRGE---FED---RLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ---------------CT---THHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -----ccccch---HHH---HHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence 000000 001 11122222333567899999 33333344555443 234566665554331 111
Q ss_pred ---CCCcceEecCCCChHHHHHHHHHhh
Q 038919 293 ---HRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 293 ---~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
......+.+++++.++..+++....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1123468999999999999998765
No 58
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.1e-05 Score=79.62 Aligned_cols=172 Identities=19% Similarity=0.250 Sum_probs=99.8
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
.++.|.+...++|.+.+.. +-..++-|.++|++|+|||.||+++++..... ++..+........
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~- 255 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKY- 255 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSS-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhcccc-
Confidence 6788999988888775431 22335779999999999999999999976543 2333222221110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhH-HHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCC-
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGI-NMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDW- 273 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~- 273 (483)
.......+ ......-...+++|++|+++.. ..+..|+..+..
T Consensus 256 --------------------~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 256 --------------------IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred --------------------chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 01111111 1222233468999999999532 112333322221
Q ss_pred -CCCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 274 -FGPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 274 -~~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
...+..||.||..+..+. ....+..+.++..+.++-.++|..+..+.....+. -...+++.+.|.-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 134556777776553321 11244578899889998889998776443222111 1455677777753
No 59
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.5e-05 Score=78.33 Aligned_cols=172 Identities=17% Similarity=0.242 Sum_probs=99.3
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|.+...++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +..........
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk-- 282 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQK-- 282 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcc--
Confidence 4688999988888775321 223467799999999999999999999776542 33222221110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhH-HHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGI-NMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
........+ ..+...-...+++|++|+++.. ..+..++..+..+
T Consensus 283 -------------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 283 -------------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp -------------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred -------------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 001111111 1222233467999999999532 1122222222111
Q ss_pred --CCCcEEEEEcCCHh-----HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 --GPGSRIIITTRDEH-----LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 --~~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
..+..||.||..+. +......+..+.++..+.++-.++|+.++......... -...|++.|.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHCCCCC
Confidence 23445566776443 22223456788999999999999998776443222111 1455677777753
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.38 E-value=1.3e-06 Score=94.81 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=83.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 216 (483)
+++|||+.++..+...+... ..+.+.|+|++|+|||+||+.+++.+.... ...++..+.......
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g------- 240 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG------- 240 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-------
Confidence 56899999999999988753 234578999999999999999999874421 223333322111000
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCCHH-------------HHHHHhcCCCCCCCCcEEE
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHVE-------------QLRRLAGKRDWFGPGSRII 281 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~~il 281 (483)
.............+...+. +++.+|+||+++... .+..++. ..+..+|
T Consensus 241 ------------~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-----~~~i~~I 303 (854)
T 1qvr_A 241 ------------AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-----RGELRLI 303 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-----TTCCCEE
T ss_pred ------------CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-----CCCeEEE
Confidence 0001112222222222232 368999999997542 1222222 1234455
Q ss_pred EEcCCHhH-----Hh-hCCCcceEecCCCChHHHHHHHHHhh
Q 038919 282 ITTRDEHL-----LK-LHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 282 iTtR~~~~-----~~-~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
.+|..... .. .......+.+++++.++..+++....
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 55543322 01 11122458999999999999997543
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.37 E-value=5.7e-06 Score=83.38 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=101.7
Q ss_pred HhhhchhHHHHHHHHHhhcC-----------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGAG-----------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..++|.+..++.|.+++... ....+-+.|+|++|+|||+||+.+++.... .++..+.......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~-- 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSK-- 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTS--
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhh--
Confidence 46899999999998876431 233467999999999999999999886532 2333322211110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCCCC--CCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDW--FGP 276 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~ 276 (483)
. . ..........+.....+++.+|+||+++.. .....|+..+.. ...
T Consensus 278 ~------------~------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 278 L------------A------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp C------------T------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred h------------c------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 0 0 001111222334444577899999999321 112222221111 133
Q ss_pred CcEEEEEcCCHhH-----HhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC-hHHHHHHH
Q 038919 277 GSRIIITTRDEHL-----LKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL-PLALKVLG 349 (483)
Q Consensus 277 ~~~iliTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~la 349 (483)
+..||.||..+.. .........+.++..+.++-.+++..++.......+ .....++..+.|. +-.|..+.
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHHH
Confidence 4566667765532 111234457899999999999999887643322211 1134566666664 54455443
No 62
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.36 E-value=3.6e-07 Score=76.50 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=36.3
Q ss_pred hhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 144 ELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+++|+...++.+.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988775422233457899999999999999998854
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.34 E-value=1.1e-05 Score=74.53 Aligned_cols=179 Identities=15% Similarity=0.127 Sum_probs=94.4
Q ss_pred HhhhchhHHHHHHHHHhhc---C-------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA---G-------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+...+.+.+.+.. . ....+-+.|+|++|+||||||+.+++.....| +..+....... .
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~i~~~~~~~~--~ 85 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSDFVEM--F 85 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE----EEECSCSSTTS--C
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE----EEEeHHHHHHH--h
Confidence 5688988887777664321 0 11234588999999999999999998764322 22222111100 0
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCC--C
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDW--F 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~ 274 (483)
. ..........+.......+.++++|+++.. ..+..++..+.. .
T Consensus 86 ------------~------~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 86 ------------V------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp ------------C------CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred ------------h------hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0 001111122233333456789999998321 122333221111 1
Q ss_pred CCCcEEEEEcCCHhHH-hh----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC-ChHHHHHH
Q 038919 275 GPGSRIIITTRDEHLL-KL----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG-LPLALKVL 348 (483)
Q Consensus 275 ~~~~~iliTtR~~~~~-~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~l 348 (483)
..+..||.||..+... .. ......+.++..+.++-.+++..........++. ....++..+.| ++--|..+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHHHH
Confidence 2345666677654321 11 1234567888888888888887765332211111 13345666777 66555443
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.1e-05 Score=79.25 Aligned_cols=171 Identities=17% Similarity=0.184 Sum_probs=92.9
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccc-cC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD-KE 210 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 210 (483)
.++.|.+...++|.+.+.. +-..++-+.++|++|+|||.||+++++..... ++..+...... ..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~----~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA----FIRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE----EEEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eEEEecchhhcccc
Confidence 6788999988888775431 22345679999999999999999999976543 23332222111 11
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCC-
Q 038919 211 GSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDW- 273 (483)
Q Consensus 211 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~- 273 (483)
+-... .....+...-...+++|++|+++.. ..+..|+..+..
T Consensus 248 Ge~e~---------------------~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 248 GEGPR---------------------MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp SHHHH---------------------HHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred chhHH---------------------HHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 11011 1111222233467899999998421 112333322211
Q ss_pred -CCCCcEEEEEcCCHh-----HHhhCCCcceEecCCCC-hHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 274 -FGPGSRIIITTRDEH-----LLKLHRVEEVFKLEALT-YDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 274 -~~~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~-~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
...+..||.||..+. +......+..+.++.+. .++-.++|..+..+.....+. -...+++.+.|.
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~---dl~~lA~~t~G~ 378 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA---DLDSLIIRNDSL 378 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC---CHHHHHHHTTTC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc---CHHHHHHHCCCC
Confidence 134556666776443 22222344567887664 455556666555332211111 145667777775
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.2e-05 Score=79.19 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=98.2
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccc-cC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD-KE 210 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 210 (483)
..+.|.+...++|.+.+.. +-..++-|.++|+||+|||.||+++++..... ++..+...... ..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMYI 256 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhccc
Confidence 6789999988888775321 22335779999999999999999999976543 33332222211 11
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHH-HHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCC
Q 038919 211 GSVISLQKQLISDLLKLADNSIRNVYDGINM-IGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDW 273 (483)
Q Consensus 211 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~ 273 (483)
+. ....+.. +...-...|++|++|+++.. ..+..++..+..
T Consensus 257 Ge----------------------se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 257 GE----------------------GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp SH----------------------HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ch----------------------HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 11 1111111 22223467999999999432 112233333332
Q ss_pred C--CCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 274 F--GPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 274 ~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
+ ..+..||.||..+..+. ....+..+.++..+.++-.++|+.+........+. -...+++.+.|.
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~ 386 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEF 386 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCC
Confidence 2 23455666776553321 12344678899999998899987766433221111 145567777765
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.31 E-value=1.2e-05 Score=76.14 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=38.5
Q ss_pred HhhhchhHHHHHHHHHhhc------------CCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGA------------GCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+.++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999988888876653 011245688999999999999999998774
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.27 E-value=8.3e-06 Score=87.52 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=89.6
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc------cceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE------FDGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~l 216 (483)
+.++||+.+++.+.+.|... ...-+.|+|++|+|||++|+.+++.+... ....++..+......
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-------- 255 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------- 255 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C--------
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc--------
Confidence 57899999999999988754 33567899999999999999999876432 122233322211100
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHh-cCceEEEEcCCCCH----------HHH-HHHhcCCCCCCCCcEEEEEc
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLR-QKKVLLVIDDVAHV----------EQL-RRLAGKRDWFGPGSRIIITT 284 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~----------~~~-~~l~~~~~~~~~~~~iliTt 284 (483)
..............+...+. .++.+|++|+++.. ... ..+.+.+. .....+|.+|
T Consensus 256 -----------~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 256 -----------GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp -----------CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 00111222222333333333 35789999999743 222 33334333 3445666666
Q ss_pred CCHhHHhh-------CCCcceEecCCCChHHHHHHHHHhh
Q 038919 285 RDEHLLKL-------HRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 285 R~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
..+..... ......+.+++++.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54332111 1122368899999999999887654
No 68
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.8e-05 Score=75.75 Aligned_cols=171 Identities=17% Similarity=0.218 Sum_probs=97.6
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
.++.|.+...++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +..+.......
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk-- 255 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK-- 255 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc--
Confidence 6788999988888775421 223356799999999999999999999766542 33322221111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHH-HHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINM-IGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
........+.. +...-...+++|++|+++.. ..+..++..+..+
T Consensus 256 -------------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 256 -------------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp -------------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred -------------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 01111111221 22223467899999998521 1222333222111
Q ss_pred --CCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 275 --GPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 275 --~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
..+..||.||..+..+.. ...+..+.++..+.++-.++|..+........+. ....+++.+.|.
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv---dl~~LA~~T~Gf 387 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV---NLETLVTTKDDL 387 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC---CHHHHHHHCCSC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCC
Confidence 234556667765543221 1234568889889998899998776443222111 145566777765
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.23 E-value=2.9e-05 Score=77.69 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=97.7
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+..++++.+.... +..-++-+.|+|++|+|||+||+.++...... ++..+....... .
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~~~~--~ 89 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDFVEL--F 89 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGTTTC--C
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHHHHH--H
Confidence 5688888877777665431 11113458899999999999999999876433 222222221111 0
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC--
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF-- 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 274 (483)
.. .........+.....+.+.+|+||+++.. ..+..++..+..+
T Consensus 90 -~g-----------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 90 -VG-----------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp -TT-----------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred -hc-----------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 00 00111222334444568999999999532 1233343222111
Q ss_pred CCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 GPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 ~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
..+..||.||..+..+.. ......+.+++.+.++-.+++..++.......+. ....++..+.|+.
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 235567777776543221 1234578899999888888887766433222111 1345777888887
No 70
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.17 E-value=2e-05 Score=74.81 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=39.3
Q ss_pred HhhhchhHHHHHHHHHhhcC------C-CCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGAG------C-NDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..++|.+..++.+...+... . .....+.|+|++|+|||++|+.++......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 46789988888888766542 1 113579999999999999999999977543
No 71
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.16 E-value=5.7e-06 Score=71.83 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhhcCC-CCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 148 IESRLEKLKFLMGAGC-NDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 148 R~~~l~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
....++.+.+++..-. .....+.|+|++|+|||||++.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344455555554311 2246899999999999999999999875
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.16 E-value=9.3e-06 Score=87.02 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=83.4
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 216 (483)
+.+|||+.+++.+...+... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 56999999999999998753 234578999999999999999999874321 112222111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhH---Hhh-
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHL---LKL- 292 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~---~~~- 292 (483)
..... +.... .....+......++.+|++| ...+....+.+.+. ....++|.||..... ...
T Consensus 245 ----g~~~~---G~~e~---~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ----GTKYR---GEFED---RLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ---------------CT---THHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ----ccccc---chHHH---HHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 00000 00011 11222333334678899999 33333344555544 334566666654431 000
Q ss_pred ---CCCcceEecCCCChHHHHHHHHHhh
Q 038919 293 ---HRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 293 ---~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
......+.+++++.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0122568999999999999998654
No 73
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.2e-05 Score=76.04 Aligned_cols=146 Identities=15% Similarity=0.054 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh---cccceeEEEEecccccccCCcHHHHHHHHHHH
Q 038919 147 GIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS---HEFDGSSFLADVKEKYDKEGSVISLQKQLISD 223 (483)
Q Consensus 147 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 223 (483)
|-++.++.|.+.+..+. .+...++|++|+||||+|..+++... ..++....+. ... ...+ ....+++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~--~~~~--id~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEG--ENIG--IDDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSS--SCBC--HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCc--CCCC--HHHHHHHHHH
Confidence 34556777888887554 67999999999999999999987531 1122222221 110 0111 1222223332
Q ss_pred HhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhhCCCcceEe
Q 038919 224 LLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLLKLHRVEEVFK 300 (483)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~~~~~~~~~ 300 (483)
..... ..+++-++|+|+++. .+..+.|+..+....+.+.+|++|.++ .+.+..... .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 21100 023456899999964 445555554444335677777776554 333333333 899
Q ss_pred cCCCChHHHHHHHHHhh
Q 038919 301 LEALTYDEAFQLFCLKA 317 (483)
Q Consensus 301 l~~L~~~ea~~L~~~~~ 317 (483)
+.+++.++..+.+...+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998876
No 74
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.08 E-value=5.7e-05 Score=75.79 Aligned_cols=49 Identities=27% Similarity=0.258 Sum_probs=38.1
Q ss_pred HhhhchhHHHHHHHHHh---hcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLM---GAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++|.+...+.+..++ ..+....+-+.++|++|+|||+||+.+++.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 67999998877665544 33333346789999999999999999998764
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.03 E-value=1.5e-05 Score=73.92 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=35.0
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++|.+..+..+.+.+.........+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999988888776653222235688999999999999999998654
No 76
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.02 E-value=2.1e-06 Score=79.87 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=82.9
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..++|.+...+.+.+.+.. +....+-+.|+|++|+|||+||+.+++.....|- ..+.......
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~----~v~~~~~~~~--- 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF----SMGGSSFIEM--- 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC----CCCSCTTTTS---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE----EechHHHHHh---
Confidence 4688888877777765541 1112234789999999999999999997654321 1111110000
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHH-----------------HHHHHhcCCCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE-----------------QLRRLAGKRDWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~ 275 (483)
..+.. ...... .+.......+.+|+||+++... .+..++..+....
T Consensus 84 -----------~~~~~---~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 84 -----------FVGLG---ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp -----------CSSSC---SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred -----------hcchH---HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 00111 111111 1222334567899999996431 1222333332211
Q ss_pred ---CCcEEEEEcCCHhHH-----hhCCCcceEecCCCChHHHHHHHHHhhc
Q 038919 276 ---PGSRIIITTRDEHLL-----KLHRVEEVFKLEALTYDEAFQLFCLKAF 318 (483)
Q Consensus 276 ---~~~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 318 (483)
....||.||..+..+ ........+.+++.+.++-.+++...+.
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 224566677654321 1112335678888999988888877653
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.02 E-value=2.8e-05 Score=73.56 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=37.5
Q ss_pred hhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 144 ELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.++|+...+..+.+.+.........|.|+|++|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 57899999988888776422234568899999999999999999854
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.99 E-value=1.4e-06 Score=72.75 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=34.4
Q ss_pred hhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 144 ELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.++|++..++++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 578999988888887654112224588999999999999999887543
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.94 E-value=5.6e-05 Score=80.07 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=98.1
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|.+..+++|.+.+.. +-..++-|.++|++|+|||+||+++++..... ++..+......
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~s--- 276 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMS--- 276 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHS---
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhc---
Confidence 5688998888888775431 11235679999999999999999999866443 33332211110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhh-hHHHHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCCCCC--C
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYD-GINMIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDWF--G 275 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~ 275 (483)
. ....... ....+.......+++|+||+++.. ..+..|+..+... .
T Consensus 277 ---------------k---~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 277 ---------------K---LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ---------------S---CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred ---------------c---cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 0 0111111 222233334578999999999532 1223333222111 2
Q ss_pred CCcEEEEEcCCHhHHh-h----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 276 PGSRIIITTRDEHLLK-L----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 276 ~~~~iliTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
.+..||.||..+..+. . ......++++..+.++-.++|+.+..+.....+ .....++..+.|.-
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 3444555665443221 1 134567899999999999999877643321111 11456777787764
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.91 E-value=3.8e-05 Score=82.29 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=84.6
Q ss_pred HhhhchhHHHHHHHHHhhcCC-------CCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGC-------NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVIS 215 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 215 (483)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-.. +...++......... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~-~i~i~~s~~~~~~~~-~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEES-MIRIDMSEYMEKHST-S- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTC-EEEEEGGGGCSSCCC-C-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcc-eEEEechhccccccc-c-
Confidence 568999999988887765311 112379999999999999999999987433222 333344433332221 0
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC--HHHHHHHhcCCCC-----------CCCCcEEEE
Q 038919 216 LQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH--VEQLRRLAGKRDW-----------FGPGSRIII 282 (483)
Q Consensus 216 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~-----------~~~~~~ili 282 (483)
.......++ .....+|+||+++. .+....|+..+.. ...+..||+
T Consensus 568 -------------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 001111111 23445999999963 3333333322211 123567888
Q ss_pred EcCC-----------------HhHHhhCCCcceEecCCCChHHHHHHHHHhh
Q 038919 283 TTRD-----------------EHLLKLHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 283 TtR~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
||.. +.+.. ..+.++.+++|+.++-.+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 8872 11111 233578999999999888886654
No 81
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.87 E-value=6.9e-05 Score=70.43 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.++.+.|+|++|+|||+||+.+++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35688999999999999999999987443
No 82
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.86 E-value=1.8e-05 Score=66.35 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...++|+|++|+|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987764
No 83
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.81 E-value=0.00031 Score=64.41 Aligned_cols=172 Identities=19% Similarity=0.188 Sum_probs=85.6
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.+++|.+....++.++... +-.-.+-+.|+|++|+|||||++.++...... .+.+. ..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~-~~-------- 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GS-------- 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HH--------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEee-HH--------
Confidence 4577777665555543221 00111238999999999999999999876421 12221 11
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH-hcCceEEEEcCCCCH----------------HHHHHHhcCCCCC-
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRL-RQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF- 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 274 (483)
.+.. . ........+..+.+.. ...+.++++||++.. ..+..++..+...
T Consensus 84 --~~~~----~-------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 84 --DFVE----M-------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp --HHHH----S-------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred --HHHH----H-------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 1000 0 0000111122222222 245789999999422 1122332221111
Q ss_pred -CCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 -GPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 -~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
.....++.||..+..+.. ......+.++..+.++-.+++...+.......+. ....+++.+.|+-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc---CHHHHHHHcCCCC
Confidence 122334456665544321 1344578899999988888887665322211111 1334566666654
No 84
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.79 E-value=0.00012 Score=64.65 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCC--cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 151 RLEKLKFLMGAGCND--VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
.++.+.+++...... .+.+.|+|++|+|||+||+.+++.........+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 444555555533221 26889999999999999999999876554444444
No 85
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.74 E-value=0.001 Score=61.76 Aligned_cols=172 Identities=19% Similarity=0.196 Sum_probs=88.0
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.+++|.+...+++.++... +-.-.+-+.|+|++|+|||||++.++...... .+.+. ..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~---~i~~~-~~-------- 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GS-------- 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC---EEEec-HH--------
Confidence 5688888776666554321 00111238999999999999999999876421 22222 11
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHH-HhcCceEEEEcCCCCH----------------HHHHHHhcCCCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRR-LRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~ 275 (483)
.+.. . . .......+..+.+. ....+.++++||++.. ..+..++..+....
T Consensus 108 --~~~~----~-~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 --DFVE----M-F------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp --HHHH----S-T------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred --HHHH----H-H------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1100 0 0 00011111122222 2346789999999421 11223332222111
Q ss_pred -C-CcEEEEEcCCHhHH-----hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 276 -P-GSRIIITTRDEHLL-----KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 276 -~-~~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
. ...++.||..+..+ ........+.++..+.++-.+++..++.......+. ....++..+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 1 23344456554332 212345678899999998888887665332211111 1344666666655
No 86
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.71 E-value=0.0001 Score=79.08 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=38.0
Q ss_pred HhhhchhHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESRLEKLKFLMGAG-------CNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 56889999988887766431 1123479999999999999999999977
No 87
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.70 E-value=0.00027 Score=71.07 Aligned_cols=169 Identities=19% Similarity=0.214 Sum_probs=91.9
Q ss_pred HhhhchhHHHHHHHHHhhc---C-------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA---G-------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.+++|.+....++.+.... . -.-.+-+.|+|++|+|||+||+.++..... .++..+....... .
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~~--~ 104 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEM--F 104 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTSS--C
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHHh--h
Confidence 4688888877776664321 0 011234899999999999999999987642 2233322221110 0
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHh----cCceEEEEcCCCCH----------------HHHHHHhcCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLR----QKKVLLVIDDVAHV----------------EQLRRLAGKRD 272 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~----------------~~~~~l~~~~~ 272 (483)
.. .....+...+. ..+.++++|+++.. ..+..++..+.
T Consensus 105 -~g---------------------~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 -VG---------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp -TT---------------------HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred -hh---------------------hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 00 00111112221 24689999999421 22334433222
Q ss_pred CC--CCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 273 WF--GPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 273 ~~--~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
.+ .....++.||..+..+.. ......+.++..+.++-.+++..++.......+. ....++..+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 11 223455566666644321 1234578899999998889988776332222111 1345677777776
No 88
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.70 E-value=0.0018 Score=60.00 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=67.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH-Hh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR-LR 247 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-l~ 247 (483)
++|+|++|+|||||++.++..... ..+.+. ....... .. .. ....+..+.+. ..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~-~~-~~-------------------~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNM-YV-GE-------------------SERAVRQVFQRAKN 101 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSS-TT-HH-------------------HHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhh-hh-hH-------------------HHHHHHHHHHHHHh
Confidence 999999999999999999986543 122222 1111110 00 00 01111122222 23
Q ss_pred cCceEEEEcCCCCH-------------HHHHHHhcCCCCC--CCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChH
Q 038919 248 QKKVLLVIDDVAHV-------------EQLRRLAGKRDWF--GPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYD 307 (483)
Q Consensus 248 ~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ 307 (483)
..+.++++|+++.. .....++..+... .....++.+|..+..+. ....+..+.++..+.+
T Consensus 102 ~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 56789999999642 0111222111100 12334555666654432 1245567889999999
Q ss_pred HHHHHHHHhh
Q 038919 308 EAFQLFCLKA 317 (483)
Q Consensus 308 ea~~L~~~~~ 317 (483)
+-.+++....
T Consensus 182 ~r~~il~~~~ 191 (274)
T 2x8a_A 182 DRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998766
No 89
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.69 E-value=0.00022 Score=69.61 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+.|+|++|+|||++|+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998763
No 90
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.58 E-value=0.00047 Score=70.56 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=37.7
Q ss_pred HHhhhchhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 142 LKELVGIESRLEKLKFLMGA----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
....+|.+...+.+.+.+.. .......+.|+|++|+||||||+.++......
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 36688888777666553321 11235689999999999999999999877543
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.56 E-value=0.00045 Score=74.11 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=87.3
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..++|.+..++.|.+++.. .-.....+.|+|++|+||||||+.++......| +..+.......
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~-- 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSK-- 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhh--
Confidence 6799999999998887643 223346799999999999999999998654332 22222111100
Q ss_pred cHHHHHHHHHHHHhcccCCCccchh-hhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVY-DGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
...... .....+.......+.++++|+++.. ..+-.++.....
T Consensus 278 -------------------~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~- 337 (806)
T 1ypw_A 278 -------------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ- 337 (806)
T ss_dssp -------------------STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-
T ss_pred -------------------hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-
Confidence 001111 1122233334467899999999321 122233332221
Q ss_pred CCCcEEEEEcCCHhHHhh-C----CCcceEecCCCChHHHHHHHHHhhcc
Q 038919 275 GPGSRIIITTRDEHLLKL-H----RVEEVFKLEALTYDEAFQLFCLKAFE 319 (483)
Q Consensus 275 ~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~ 319 (483)
..+..+|.||..+..+.. . .....+.+...+.++-.+++...+..
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 234556666665422211 1 23345788889999999999876533
No 92
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.37 E-value=0.0012 Score=71.50 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=38.7
Q ss_pred HhhhchhHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAG-------CNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45789999888888766531 111357999999999999999999987743
No 93
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.26 E-value=0.0013 Score=58.52 Aligned_cols=34 Identities=32% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHH
Q 038919 155 LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 155 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
|...+..+-....++.|.|++|+|||||+..++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4444432223346899999999999999999988
No 94
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.22 E-value=0.00092 Score=64.10 Aligned_cols=101 Identities=23% Similarity=0.247 Sum_probs=54.5
Q ss_pred HHHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCC
Q 038919 153 EKLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNS 231 (483)
Q Consensus 153 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 231 (483)
..|...|. .+-....++.|+|++|+|||||+.+++......-..++|+. ..... . ....+.+.-..-......
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId-~E~s~---~--~~ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID-AEHAL---D--PVYAKNLGVDLKSLLISQ 120 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCCC---C--HHHHHHHTCCGGGCEEEC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe-ccccc---c--hHHHHHcCCchhhhhhhh
Confidence 34555555 33234579999999999999999999987765433445553 22111 1 111121100000000111
Q ss_pred ccchhhhHHHHHHHHh-cCceEEEEcCCC
Q 038919 232 IRNVYDGINMIGRRLR-QKKVLLVIDDVA 259 (483)
Q Consensus 232 ~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 259 (483)
..+..+....+...++ .+.-++|+|.+.
T Consensus 121 ~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 121 PDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp CSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred ccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 2344455555555444 456799999873
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.19 E-value=0.00069 Score=63.47 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=43.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.+++.|+|++|+|||+||.+++.. ... .+.|+. ... ...... ...+.......+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~--~G~-~VlyIs-~~~-eE~v~~------------------~~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA--LGG-KDKYAT-VRF-GEPLSG------------------YNTDFNVFVDDIARA 179 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH--HHT-TSCCEE-EEB-SCSSTT------------------CBCCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--CCC-CEEEEE-ecc-hhhhhh------------------hhcCHHHHHHHHHHH
Confidence 367889999999999999999886 111 223443 200 000000 003344455556666
Q ss_pred HhcCceEEEEcCCCC
Q 038919 246 LRQKKVLLVIDDVAH 260 (483)
Q Consensus 246 l~~~~~LlVlDdv~~ 260 (483)
+.+.+ +||+|++..
T Consensus 180 l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 MLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHCS-EEEEECCTT
T ss_pred HhhCC-EEEEecccc
Confidence 66666 999999954
No 96
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.15 E-value=0.00072 Score=71.65 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=79.0
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|.+...++|.+.+.. +....+-+.++|++|+|||.||+++++..... ++....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~----f~~v~~-------- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKG-------- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE----EEECCH--------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc----eEEecc--------
Confidence 4567888777777765432 11224558899999999999999999976543 222111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH-hcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL-RQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
. .++.... ...+..+..+.+.. ...+++|+||+++.. ..+..|+..+...
T Consensus 545 --~----~l~s~~v-------Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 545 --P----ELLTMWF-------GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp --H----HHHTTTC-------SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred --c----hhhcccc-------chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 1 1111111 11122233333333 467999999999532 0133333322211
Q ss_pred C--CCcEEEEEcCCH-----hHHhhCCCcceEecCCCChHHHHHHHHHhhcc
Q 038919 275 G--PGSRIIITTRDE-----HLLKLHRVEEVFKLEALTYDEAFQLFCLKAFE 319 (483)
Q Consensus 275 ~--~~~~iliTtR~~-----~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 319 (483)
. .+.-||-||..+ .++.....+..+.++..+.++-.++|+.+..+
T Consensus 612 ~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC
T ss_pred CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC
Confidence 2 233333355433 22222245667888888888888888776643
No 97
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.05 E-value=0.0012 Score=63.41 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=65.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEE-EEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSF-LADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.+++|+|+.|+|||||.+.++..+.......++ +.+..+....... ....... ...........+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~----------~~v~q~~-~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK----------CLVNQRE-VHRDTLGFSEALRSA 192 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS----------SEEEEEE-BTTTBSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc----------cceeeee-eccccCCHHHHHHHH
Confidence 599999999999999999998876554333332 2211111000000 0000000 011112344578888
Q ss_pred HhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHH
Q 038919 246 LRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLL 290 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 290 (483)
++..|=+|++|...+.+..+.+.... ..|..||+|+......
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 89999999999999887766654432 2466688888866543
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.04 E-value=0.001 Score=59.70 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+++|.|++|+|||||++.++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357999999999999999999987543
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.99 E-value=0.0027 Score=56.56 Aligned_cols=35 Identities=14% Similarity=-0.229 Sum_probs=27.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..++.|+|++|+||||++..++++...+...+.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 47899999999999999999999886654333433
No 100
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.98 E-value=0.0015 Score=61.02 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=26.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhccc--ceeEEEE
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLA 201 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~ 201 (483)
++.|+|++|+|||||+.+++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999988776542 2344443
No 101
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.96 E-value=0.0014 Score=56.73 Aligned_cols=116 Identities=18% Similarity=0.101 Sum_probs=58.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhccc-CC--Cc-------cchh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLA-DN--SI-------RNVY 236 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-~~--~~-------~~~~ 236 (483)
..|.|++..|.||||+|...+-+...+-..+.++.-+... ...+. ..++..+.-.+.... .. .. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE-~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGE-RNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHH-HHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccH-HHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566666677999999999988776554444554322211 11111 222222200000000 00 00 0112
Q ss_pred hhHHHHHHHHhcC-ceEEEEcCCC--------CHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 237 DGINMIGRRLRQK-KVLLVIDDVA--------HVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 237 ~~~~~l~~~l~~~-~~LlVlDdv~--------~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
......++.+.+. -=|||||++. +.+.+-.++... .....||+|+|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence 2233444444443 4599999983 334444444332 4678899999975
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.0013 Score=59.08 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..+++|.|++|+|||||+..++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999976554
No 103
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.95 E-value=0.001 Score=60.18 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|..+|..+-....++.|.|++|+|||||+..++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3444443222234699999999999999999999853
No 104
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.92 E-value=0.0028 Score=58.21 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=63.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
..+++|+|+.|+|||||++.++..+...+.+.+++....-..-.... . .+........ +.......+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~-~--------~~v~q~~~gl-~~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK-K--------SIVNQREVGE-DTKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S--------SEEEEEEBTT-TBSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc-c--------eeeeHHHhCC-CHHHHHHHHHHH
Confidence 47999999999999999999988765443444544321100000000 0 0000000000 012234566777
Q ss_pred HhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhH
Q 038919 246 LRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHL 289 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~ 289 (483)
+...+=+|++|...+.+....++... ..|..|++||.+...
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 77788899999998776655544322 246668888876543
No 105
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.0094 Score=50.55 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCChhHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVV 186 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~ 186 (483)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 106
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.82 E-value=0.0024 Score=61.33 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 154 KLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 154 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.|..+|. .+-....++.|+|++|+||||||.+++......-..++|+.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444554 22233578999999999999999999987655433445554
No 107
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.80 E-value=0.0072 Score=57.89 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|..+|..+-....++.|+|++|+|||+||.+++....
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45555543333467999999999999999999998643
No 108
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.75 E-value=0.0026 Score=55.87 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 148 IESRLEKLKFLMGA-GCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 148 R~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
|+..++.+.+.+.. ......+++|.|++|+|||||++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55666777766553 2334689999999999999999999887643
No 109
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.75 E-value=0.0031 Score=60.60 Aligned_cols=48 Identities=29% Similarity=0.396 Sum_probs=33.2
Q ss_pred HHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 154 KLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 154 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.|..+|. .+-....++.|+|.+|+||||||.+++......-..++|+.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444454 22223578999999999999999999987665434455554
No 110
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.74 E-value=0.017 Score=54.54 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=28.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...++.|.|.+|+||||||.+++......-..++|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3479999999999999999999977654434455543
No 111
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.73 E-value=0.049 Score=52.00 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=93.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh-cccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS-HEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
-.++..++|+.|.||++.+..+...+. ..|.....+. .. ..... ..+...+-.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~-~~l~~~~~~--------------------- 70 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDW-NAIFSLCQA--------------------- 70 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCH-HHHHHHHHH---------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCH-HHHHHHhcC---------------------
Confidence 357999999999999999999988764 2333211111 11 11111 222222110
Q ss_pred HHHhcCceEEEEcCCCC-H--HHHHHHhcCCCCCCCCcEEEEEcCC-------HhHHhh-CCCcceEecCCCChHHHHHH
Q 038919 244 RRLRQKKVLLVIDDVAH-V--EQLRRLAGKRDWFGPGSRIIITTRD-------EHLLKL-HRVEEVFKLEALTYDEAFQL 312 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~iliTtR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~L 312 (483)
.-+-+.+-++|+|+++. . +..+.|...+....+++.+|+++.+ ..+... ......++..+++.++..++
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 01234566888999865 2 3444444433333467777766532 123333 33456899999999999998
Q ss_pred HHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 313 FCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
+...+..... ....+.+..+++.++|.+..+...
T Consensus 151 l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 151 VAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHHH
Confidence 8877643321 233466888999999999877643
No 112
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.71 E-value=0.002 Score=57.03 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.+++|.+.+........+++|.|++|+|||||++.++..+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344454444432344689999999999999999999987653
No 113
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.69 E-value=0.0015 Score=63.36 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=37.3
Q ss_pred HhhhchhHHHHHHHHHhh-------------cCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMG-------------AGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++|.+..++.+...+. ........+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456898888888877662 1111245689999999999999999998763
No 114
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.69 E-value=0.0026 Score=60.50 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=27.7
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|..+|..+-....++.|+|++|+|||+||.+++....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 34444532222346899999999999999999998654
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.69 E-value=0.0036 Score=60.38 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=52.7
Q ss_pred HHHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccC--
Q 038919 153 EKLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLAD-- 229 (483)
Q Consensus 153 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-- 229 (483)
..|..+|. .+-....++.|+|++|+||||||.+++......-..++|+. .... . .... ... ++...
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~-~E~s---~---~~~~---a~~-~g~d~~~ 128 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID-AEHA---L---DPVY---ARA-LGVNTDE 128 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCC---C---CHHH---HHH-TTCCGGG
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE-CCCC---h---hHHH---HHH-cCCCHHH
Confidence 34455554 22223468999999999999999999987655434455554 3221 1 1111 111 11110
Q ss_pred ---CCccchhhhHHHHHHHHh-cCceEEEEcCC
Q 038919 230 ---NSIRNVYDGINMIGRRLR-QKKVLLVIDDV 258 (483)
Q Consensus 230 ---~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv 258 (483)
....+.++....+....+ ...-+||+|.+
T Consensus 129 l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 129 LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp CEEECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred ceeecCCcHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 112344555555555554 34569999988
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.00095 Score=57.31 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+|.|+|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 117
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.62 E-value=0.0013 Score=62.85 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=39.0
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+.++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46899999998888877643 358899999999999999999876543
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.54 E-value=0.0064 Score=58.91 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...+++|+|+.|+|||||++.++..+.....+.+.+..-.-....... . .+....... .+.......+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~--------~-~~v~Q~~~g-~~~~~~~~~l~~ 204 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK--------K-SIVNQREVG-EDTKSFADALRA 204 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCS--------S-SEEEEEEBT-TTBSCSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccC--------c-eEEEeeecC-CCHHHHHHHHHH
Confidence 347899999999999999999998765442344433211000000000 0 000000000 011233456777
Q ss_pred HHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHh
Q 038919 245 RLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEH 288 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~ 288 (483)
.++..+-+|++|.+.+.+.+...+... ..|..|+.|+....
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 788888899999998777665544332 34556777777543
No 119
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.51 E-value=0.0074 Score=53.51 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...++|.|.|+||+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999865
No 120
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.50 E-value=0.011 Score=58.44 Aligned_cols=35 Identities=37% Similarity=0.587 Sum_probs=26.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
+.++|+|.+|+|||||+..++......+...+.+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 46899999999999999999987665444433333
No 121
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.46 E-value=0.0065 Score=53.49 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccccc----ccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKY----DKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~----~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
+|.|.|+||+||||.|+.+++++. ...+. .++.. .....+.. .......... ..+.+.....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~is-tGdllR~~i~~~t~lg~----~~~~~~~~G~--lvpd~iv~~lv~ 69 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHIS-TGDILREAVQKGTPLGK----KAKEYMERGE--LVPDDLIIALIE 69 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEE-HHHHHHHHHHHTCHHHH----HHHHHHHHTC--CCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEc-HHHHHHHHHHhcChhhh----hHHHHHhcCC--cCCHHHHHHHHH
Confidence 477899999999999999998642 11222 11100 00000011 1111122111 223344566677
Q ss_pred HHHhcCceEEEEcCC-CCHHHHHHH
Q 038919 244 RRLRQKKVLLVIDDV-AHVEQLRRL 267 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv-~~~~~~~~l 267 (483)
+.+..... +|||.+ .+..|.+.|
T Consensus 70 ~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 70 EVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HhhccCCc-eEecCCchhHHHHHHH
Confidence 77766554 789998 466665554
No 122
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.45 E-value=0.0013 Score=70.62 Aligned_cols=151 Identities=14% Similarity=0.191 Sum_probs=83.1
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..++|.+...+.|.+.+.. +-.....+.++|++|+|||+||+.++......|- ..+.......
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i----~v~~~~l~~~-- 550 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI----SIKGPELLTM-- 550 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC----CCCCSSSTTC--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE----EEechHhhhh--
Confidence 4567888887877776542 1112456889999999999999999998754321 1111110000
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhH-HHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGI-NMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
........+ ..+...-...+.+|+||+++.. ..+..++..+...
T Consensus 551 -------------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 551 -------------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp -------------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred -------------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 000011111 1222222345789999998531 2245566655422
Q ss_pred C--CCcEEEEEcCCHhHHhh-C----CCcceEecCCCChHHHHHHHHHhhc
Q 038919 275 G--PGSRIIITTRDEHLLKL-H----RVEEVFKLEALTYDEAFQLFCLKAF 318 (483)
Q Consensus 275 ~--~~~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~ 318 (483)
. .+..||.||..+..+.. . .....+.++..+.++-.+++..+..
T Consensus 612 ~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp ----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 2 23445556654322211 1 2234677888899999999887763
No 123
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.43 E-value=0.0017 Score=55.28 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+|+|.|++|+||||+++.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 124
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.43 E-value=0.004 Score=58.04 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=26.1
Q ss_pred CCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 162 GCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 162 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
......+|+|.|++|+||||||+.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445789999999999999999999887654
No 125
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.37 E-value=0.026 Score=52.94 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+++|+|++|+||||++..++..+... ...+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 36799999999999999999999887654 3334443
No 126
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.33 E-value=0.0035 Score=56.86 Aligned_cols=40 Identities=20% Similarity=0.026 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+.++.+.+.........|+|.|++|+||||+|+.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334443333222345789999999999999999998865
No 127
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.33 E-value=0.0058 Score=57.58 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEeCCCCCChhHHHHHHHHHhh-cccceeEEE
Q 038919 149 ESRLEKLKFLMGAGCN-DVRMIGIWGMGGLGKTTLARVVYDLIS-HEFDGSSFL 200 (483)
Q Consensus 149 ~~~l~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~ 200 (483)
...++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3344455556654222 246789999999999999999999876 543333443
No 128
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.32 E-value=0.0022 Score=55.42 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 129
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.32 E-value=0.03 Score=55.68 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc-eeEEEEecccccccCCcHHHHHHHHHHHHh
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-GSSFLADVKEKYDKEGSVISLQKQLISDLL 225 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (483)
..|..++ .+-....++.|.|.+|+|||+||.+++........ .++|+. .. ... ..+...++....
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-lE-----~~~-~~l~~R~~~~~~ 253 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-LE-----MPA-AQLTLRMMCSEA 253 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-SS-----SCH-HHHHHHHHHHHT
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-CC-----CCH-HHHHHHHHHHHc
Confidence 3444444 33334568999999999999999999987764322 344443 21 112 556666555433
No 130
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.31 E-value=0.0062 Score=57.79 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..|..+|..+-....++.|+|++|+|||+||.+++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555554332345799999999999999999998753
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.30 E-value=0.0076 Score=57.83 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|..+|..+-....++.|+|++|+|||||+..++....
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445543333458999999999999999999998763
No 132
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.28 E-value=0.0025 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...|+|.|++|+||||+++.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 133
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.25 E-value=0.063 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|+|||||.+.++.-+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999999999987543
No 134
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.25 E-value=0.0059 Score=58.50 Aligned_cols=29 Identities=21% Similarity=0.007 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
.+.++|+|++|+|||||+..+++.+...+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 47899999999999999999988765543
No 135
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.23 E-value=0.005 Score=53.98 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+++|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998876
No 136
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.21 E-value=0.043 Score=51.76 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+++|+|++|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46799999999999999999999877654 3344444
No 137
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.21 E-value=0.0027 Score=54.37 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 138
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.21 E-value=0.02 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|+|||||++.++.-+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999987543
No 139
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.20 E-value=0.0024 Score=64.25 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=37.9
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+.++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46899999998888777643 4689999999999999999998764
No 140
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.20 E-value=0.031 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..++.|.|.+|+||||||..++......-..+.|+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999998766533334444
No 141
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.18 E-value=0.0044 Score=53.67 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..|.|.|++|+||||+++.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 142
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.15 E-value=0.002 Score=55.68 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
|.|+|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4688999999999999999988654443
No 143
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.15 E-value=0.0032 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.++|+|.|++|+||||+++.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.14 E-value=0.0039 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999876
No 145
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.14 E-value=0.0099 Score=56.06 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=37.3
Q ss_pred HHhhhchhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 142 LKELVGIESRLEKLKFLMGAG--CNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+.-++|-...+..+...+... ...+.+++|.|++|+|||||++.+...+..
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 355667767777666544432 334679999999999999999998876653
No 146
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.13 E-value=0.0029 Score=60.74 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=34.2
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++|.+...+.+...+... ...-+.|+|++|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 46899988665554433321 123489999999999999999998664
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.018 Score=53.74 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...+++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987764
No 148
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.06 E-value=0.0051 Score=53.60 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 150 SRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 150 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.-+..+..++.. -+....+.|+|++|+|||++|..+++.+.
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345666666663 22335799999999999999999998764
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.03 E-value=0.0036 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999875
No 150
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.02 E-value=0.0071 Score=52.22 Aligned_cols=29 Identities=34% Similarity=0.465 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...++.|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999987643
No 151
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.02 E-value=0.0029 Score=53.90 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+++|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998654
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.01 E-value=0.0031 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+.|.|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999865
No 153
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.99 E-value=0.004 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.+|+|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999997764
No 154
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.98 E-value=0.0057 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999998865
No 155
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.98 E-value=0.0068 Score=51.36 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFL 200 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 200 (483)
..++++|.|..|+|||||+..+...+... +...++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 35789999999999999999999887654 4444433
No 156
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.98 E-value=0.0068 Score=57.63 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 147 GIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 147 GR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
+-+...+.+.+.+.. ..+....+.|.|++|+||||+++.++..+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444444444432 233456799999999999999999998765443
No 157
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.97 E-value=0.0074 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...++.|.|++|+||||+|+.++.++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998865
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0042 Score=53.43 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988654
No 159
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0045 Score=56.56 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+++|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998654
No 160
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.94 E-value=0.0041 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...+++|.|++|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3578999999999999999999986543
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.92 E-value=0.0037 Score=54.87 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 162
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.91 E-value=0.0046 Score=54.19 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|++|+|||||++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.005 Score=53.44 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 164
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.91 E-value=0.0048 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.90 E-value=0.0036 Score=53.98 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
++|+|+|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998754
No 166
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.89 E-value=0.11 Score=48.53 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999877654
No 167
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.88 E-value=0.0037 Score=54.11 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
++++|.|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765443
No 168
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.87 E-value=0.0044 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 169
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.86 E-value=0.0057 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...|+|.|++|+||||+++.+++++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 170
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.85 E-value=0.098 Score=51.42 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.+|.++|.+|+||||++..++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999877654
No 171
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.85 E-value=0.0056 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998864
No 172
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.85 E-value=0.0038 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999988654
No 173
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.84 E-value=0.0059 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 174
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.81 E-value=0.0051 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+|+|.|++|+||||+|+.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 175
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.80 E-value=0.0062 Score=53.64 Aligned_cols=27 Identities=30% Similarity=0.472 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..|+|.|++|+||||+|+.+++++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999987654
No 176
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.80 E-value=0.066 Score=53.31 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...++.|.|.+|+|||||+..++..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987764
No 177
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.78 E-value=0.0051 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 178
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.77 E-value=0.06 Score=53.32 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..|.+++. +-....++.|.|.+|+||||||.+++......-..++|+
T Consensus 185 ~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 185 TELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp HHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 34444442 223356899999999999999999998776542334444
No 179
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.77 E-value=0.024 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.149 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-+..|+|.+|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999876543
No 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.76 E-value=0.0042 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 181
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.76 E-value=0.017 Score=56.32 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
+..|..+|..+-....++.|+|++|+|||||+..++-.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34555556433233579999999999999999988744
No 182
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.76 E-value=0.005 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+|+|.|++|+||||+|+.+++++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 183
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.75 E-value=0.0081 Score=53.04 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+|+|.|++|+||||+++.+++++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987644
No 184
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.75 E-value=0.048 Score=55.15 Aligned_cols=37 Identities=11% Similarity=-0.061 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 201 (483)
...++.|.|.+|+||||||.+++...... -..++|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 45789999999999999999999887654 23344443
No 185
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.75 E-value=0.0046 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+|+|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 186
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.74 E-value=0.013 Score=67.66 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=53.8
Q ss_pred HHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhccc-----
Q 038919 155 LKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLA----- 228 (483)
Q Consensus 155 l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~----- 228 (483)
|..+|. .+-...+.+.|+|++|+|||+||.+++......-..+.|+. ..+. ... +. +..+ +..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~-~e~~---~~~---l~---a~~~-G~dl~~l~ 1483 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHA---LDP---IY---ARKL-GVDIDNLL 1483 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSC---CCH---HH---HHHT-TCCTTTCE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE-cccc---cCH---HH---HHHc-CCCchhce
Confidence 444554 22223578999999999999999999987766544555554 2211 111 11 2221 100
Q ss_pred CCCccchhhhHHHHHHHHh-cCceEEEEcCCC
Q 038919 229 DNSIRNVYDGINMIGRRLR-QKKVLLVIDDVA 259 (483)
Q Consensus 229 ~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 259 (483)
-..+.+.++....++...+ .++-+||+|.+.
T Consensus 1484 v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1484 CSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 0112233444555554443 577899999983
No 187
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.74 E-value=0.0085 Score=54.13 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..++.|.|++|+|||||+.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999998876654433444443
No 188
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.72 E-value=0.0072 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...|+|.|++|+||||+|+.++..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 189
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.72 E-value=0.0061 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998663
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.71 E-value=0.048 Score=53.53 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=25.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...++.++|++|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999877654
No 191
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.70 E-value=0.0068 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 192
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.69 E-value=0.0079 Score=52.02 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 193
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.68 E-value=0.013 Score=55.80 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=57.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
..++|+|+.|+|||||++.++..+... .+.+.+.+..+.... .. . ....... ..-......+...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~-~--------~~i~~~~---ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HH-K--------NYTQLFF---GGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SC-S--------SEEEEEC---BTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cc-h--------hEEEEEe---CCChhHHHHHHHHh
Confidence 579999999999999999998766442 445555433211100 00 0 0000000 01123344566777
Q ss_pred hcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 247 RQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 247 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
..++-+|++|.+.+.+.++.+. .+. ..+.-+|+|+...
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAG 275 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECS
T ss_pred hhCCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEccc
Confidence 8888899999997755444332 221 1122356666643
No 194
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.67 E-value=0.046 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||.+.++.-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999988654
No 195
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.66 E-value=0.0064 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 196
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.65 E-value=0.011 Score=61.21 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=42.5
Q ss_pred HHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 139 SEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 139 ~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 344578999999999888888754 479999999999999999999876544
No 197
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.64 E-value=0.0076 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 198
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.63 E-value=0.0075 Score=53.19 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988654
No 199
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.61 E-value=0.007 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|++|+|||||++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997653
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.60 E-value=0.007 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+|+|+|++|+||||+++.++..+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988653
No 201
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.60 E-value=0.0073 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.60 E-value=0.023 Score=54.58 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+...+........+|+|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3333443334457899999999999999999998876543
No 203
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.59 E-value=0.0074 Score=52.31 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=22.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+|+|.|++|+||||+++.+++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999997743
No 204
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.59 E-value=0.049 Score=53.71 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.++|.|.+|+|||+|+..+++.+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTT
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhh
Confidence 4689999999999999999999886543
No 205
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.57 E-value=0.0074 Score=52.75 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...+|+|+|+.|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999885
No 206
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.57 E-value=0.007 Score=53.35 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+|+|.|++|+||||+++.+++++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877543
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.55 E-value=0.021 Score=54.11 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...+++|+|+.|+||||++..++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876654
No 208
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.54 E-value=0.0076 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998865
No 209
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.51 E-value=0.0084 Score=51.45 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.++|+|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999997664
No 210
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.50 E-value=0.0078 Score=52.43 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.50 E-value=0.0082 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 212
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.50 E-value=0.022 Score=57.94 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 155 LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 155 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+...|..+-....+++|.|++|+|||||+..++......
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 334444322234689999999999999999999866543
No 213
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.49 E-value=0.099 Score=50.39 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=33.2
Q ss_pred hhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 144 ELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.++|....+.++...+..-......+.|+|.+|+||+++|+.+...-.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 577877777666665543111223477999999999999998876543
No 214
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.46 E-value=0.039 Score=54.62 Aligned_cols=40 Identities=33% Similarity=0.481 Sum_probs=28.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKE 205 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 205 (483)
.+.++|.|.+|+|||+|+.++++.+.......+.+..+.+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGE 204 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGE 204 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESC
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEccc
Confidence 4679999999999999999999986543333333333443
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.46 E-value=0.01 Score=50.83 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..+++|+|+.|+||||+++.++..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999987643
No 216
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.44 E-value=0.009 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.451 Sum_probs=22.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 217
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.43 E-value=0.2 Score=49.33 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.+++|.++|.+|+||||++..++..+.......+.+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4689999999999999999999988776523334443
No 218
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.43 E-value=0.015 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...++.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998754
No 219
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.40 E-value=0.0077 Score=52.82 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~ 188 (483)
+|+|+|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 220
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.38 E-value=0.0095 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+|+|+|+.|+||||+++.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998863
No 221
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.36 E-value=0.009 Score=52.54 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+++|+|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998753
No 222
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.35 E-value=0.0088 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 223
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.35 E-value=0.0082 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~ 187 (483)
..+++|.|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.35 E-value=0.03 Score=49.79 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+.+...+.. ...+.|+|+|.+|+|||||+..++......
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34444444442 245789999999999999999999875443
No 225
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.34 E-value=0.01 Score=58.50 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=36.2
Q ss_pred HhhhchhHHHHHHHHHhhc------------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGA------------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..++|.+...+.+...+.. .....+-+.++|++|+|||++|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4567877777777655421 00123568999999999999999999876443
No 226
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.33 E-value=0.009 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.+++|+|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 227
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.33 E-value=0.018 Score=52.54 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
-...+..++....+....+.|+|++|+|||.+|..+++.+
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3445677777542445679999999999999999999853
No 228
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.32 E-value=0.017 Score=54.43 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEec
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV 203 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 203 (483)
+.++|+|+|-||+||||.+..++..+...-. .+.+.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllID~ 84 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGC 84 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEEec
Confidence 5689999999999999999999887766533 3444433
No 229
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.28 E-value=0.017 Score=54.08 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=28.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+++|+|++|+|||||+..++..+... .+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35799999999999999999999877654 3344443
No 230
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.28 E-value=0.019 Score=50.86 Aligned_cols=42 Identities=26% Similarity=0.255 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 150 SRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 150 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...+.+...+.. ...+.++|+|.+|+|||||+..+.......
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444444432 245899999999999999999999876544
No 231
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.26 E-value=0.011 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+|+|.|+.|+||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998654
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.26 E-value=0.0085 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999865
No 233
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.25 E-value=0.0094 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...|+|.|++|+||||+++.+++++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 234
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.25 E-value=0.0081 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...|.|.|++|+||||+++.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 235
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.24 E-value=0.0087 Score=55.79 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+|+|.|+.|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 236
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.24 E-value=0.0099 Score=56.88 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+.++|.|.+|+|||+|+.++++.+...
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 34688999999999999999999877643
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.21 E-value=0.014 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++.|.|++|+||||+++.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999998775
No 238
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.21 E-value=0.014 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998865
No 239
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.19 E-value=0.034 Score=52.07 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=27.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
...+++|+|+.|+||||++..++..+... .+.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 35799999999999999999999876543 333444
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.16 E-value=0.0097 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+.++|+|++|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999987653
No 241
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.12 E-value=0.0096 Score=52.86 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..|+|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 242
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.09 E-value=0.07 Score=52.30 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=54.0
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCc
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSI 232 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 232 (483)
..+...+. ....+++|+|+.|+|||||.+.+...+... ...+++..-.-....... .......
T Consensus 157 ~~L~~l~~---~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~~~~-------------~q~~v~~ 219 (418)
T 1p9r_A 157 DNFRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGI-------------GQTQVNP 219 (418)
T ss_dssp HHHHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSS-------------EEEECBG
T ss_pred HHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhccCCc-------------ceEEEcc
Confidence 34444443 234789999999999999999999877554 333443311000000000 0000000
Q ss_pred cchhhhHHHHHHHHhcCceEEEEcCCCCHHHHH
Q 038919 233 RNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLR 265 (483)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~ 265 (483)
.........++..++..+-++++.++.+.+...
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~ 252 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQ 252 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHH
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHH
Confidence 001123456777788888888999987765443
No 243
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.05 E-value=0.093 Score=48.86 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+++|+|.+|+||||++..++..+... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 45789999999999999999999877654 3344444
No 244
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.04 E-value=0.011 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..|+|+|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 245
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.03 E-value=0.015 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+|+|.|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988654
No 246
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.03 E-value=0.016 Score=54.54 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
....+++|.|+.|+|||||++.++..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34679999999999999999999887654
No 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.02 E-value=0.019 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999999843
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.99 E-value=0.014 Score=55.23 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998654
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.98 E-value=0.026 Score=47.28 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34799999999999999999999876
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.98 E-value=0.013 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|+|||||++.+...+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 251
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.95 E-value=0.015 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 252
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.94 E-value=0.0087 Score=52.84 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.94 E-value=0.015 Score=54.24 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.++++|.|++|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999999864
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.94 E-value=0.31 Score=48.82 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..++|.|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999877654
No 255
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.93 E-value=0.015 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.91 E-value=0.026 Score=48.12 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.++++|.|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.91 E-value=0.015 Score=51.76 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988664
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.89 E-value=0.017 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 259
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.89 E-value=0.018 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++++|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999864
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.88 E-value=0.035 Score=49.16 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
-.|.+.|.||+||||+|..++......
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 458889999999999999999887655
No 261
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.87 E-value=0.047 Score=52.28 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=27.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
...+++|+|+.|+||||++..++..+... .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 35799999999999999999999876543 333444
No 262
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.87 E-value=0.015 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999866
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.87 E-value=0.014 Score=55.19 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.++|+|.|+.|+|||||+..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999865
No 264
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.87 E-value=0.013 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.113 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++.|.|.+|+|||+||.+++...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987654
No 265
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.86 E-value=0.016 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+.+.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999999864
No 266
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.86 E-value=0.017 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.85 E-value=0.013 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998855
No 268
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.84 E-value=0.016 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.++++|+|++|+||||||..++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998653
No 269
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.84 E-value=0.016 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 270
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.82 E-value=0.047 Score=62.34 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=54.5
Q ss_pred HHHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccC--
Q 038919 153 EKLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLAD-- 229 (483)
Q Consensus 153 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-- 229 (483)
..|..+|. .+-...+++.|+|++|+||||||.+++......-..++|+. ...... .+. ... ++...
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis-~E~s~~------~~~---a~~-lGvd~~~ 437 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHALD------PIY---ARK-LGVDIDN 437 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-TTSCCC------HHH---HHH-TTCCGGG
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE-ccCchH------HHH---HHH-cCCCHHH
Confidence 44555554 22223579999999999999999999987765544555553 222111 111 122 11110
Q ss_pred ---CCccchhhhHHHHHHHHh-cCceEEEEcCCC
Q 038919 230 ---NSIRNVYDGINMIGRRLR-QKKVLLVIDDVA 259 (483)
Q Consensus 230 ---~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 259 (483)
....+.++....+....+ .+.-+||+|.+.
T Consensus 438 L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 438 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred eEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 112344455555554443 466799999984
No 271
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.80 E-value=0.024 Score=48.83 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.++.|+|+.|+||||++..++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 578899999999999998888776433
No 272
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.70 E-value=0.12 Score=45.33 Aligned_cols=36 Identities=11% Similarity=-0.131 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
...+..++|..|.||||.+...+.+...+-..++++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 357889999999999999999988876554434443
No 273
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.63 E-value=0.013 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=16.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHH-HHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVY-DLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 190 (483)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 653
No 274
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.59 E-value=0.035 Score=53.62 Aligned_cols=27 Identities=33% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999754
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.57 E-value=0.031 Score=52.19 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+++|.|++|+|||||+..++..+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999877654
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.56 E-value=0.019 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988664
No 277
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.51 E-value=0.041 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++.+.|.||+||||++..++..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999998776
No 278
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.48 E-value=0.026 Score=56.62 Aligned_cols=49 Identities=8% Similarity=-0.066 Sum_probs=35.1
Q ss_pred hhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 144 ELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...-|.+..+.+.+..........+|.+.|++|+||||+|+.++.++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455555555666655322223478999999999999999999998864
No 279
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.47 E-value=0.026 Score=53.11 Aligned_cols=27 Identities=41% Similarity=0.444 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+++|.|+.|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999988765
No 280
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.46 E-value=0.061 Score=62.32 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=55.0
Q ss_pred HHHHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccC-
Q 038919 152 LEKLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLAD- 229 (483)
Q Consensus 152 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~- 229 (483)
...|..+|. .+-....++.|+|++|+||||||.+++......-..++|+. ..... ..+. ... ++...
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis-~E~s~------~~~~---a~~-lGvd~~ 436 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHAL------DPIY---ARK-LGVDID 436 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSCC------CHHH---HHH-TTCCTT
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-cCCCH------HHHH---HHH-cCCCHH
Confidence 345555554 22223579999999999999999999988765534445543 22211 1111 122 22111
Q ss_pred ----CCccchhhhHHHHHHHHh-cCceEEEEcCC
Q 038919 230 ----NSIRNVYDGINMIGRRLR-QKKVLLVIDDV 258 (483)
Q Consensus 230 ----~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv 258 (483)
....+..+....++...+ ...-+||+|.+
T Consensus 437 ~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 437 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 470 (2050)
T ss_dssp TCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred HeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 012344555555554443 46779999988
No 281
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.43 E-value=0.023 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 282
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.37 E-value=0.2 Score=49.00 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~ 188 (483)
+++|+|+.|.|||||...++-
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998854
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.36 E-value=0.023 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.161 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998865
No 284
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.30 E-value=0.021 Score=56.24 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998754
No 285
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.30 E-value=0.033 Score=49.88 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999999998765
No 286
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.26 E-value=0.042 Score=54.62 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=28.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+++|+|++|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999877644 3445553
No 287
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.21 E-value=0.34 Score=49.80 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...++|+|+.|+|||||++.++.-+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999988643
No 288
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.21 E-value=0.047 Score=51.16 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=28.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEec
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV 203 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 203 (483)
..++|+|+|-||+||||+|..++..+...-. .+.+.+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD~ 77 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGC 77 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678888899999999999999988776533 3444433
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.20 E-value=0.042 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++.|+|++|+|||||+..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999876553
No 290
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.18 E-value=0.031 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998865
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.18 E-value=0.014 Score=49.59 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
++++|+|..|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999876653
No 292
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.15 E-value=0.023 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999988763
No 293
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.14 E-value=0.079 Score=60.55 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=53.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
..++|-|+|+.|+||||||.++....+..-...+|+. .... .+ ....+.+.-.+-...-..+..-++.+..+..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~-~e~~---~~--~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHA---LD--PIYARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-TTSC---CC--HHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-cCCC---CC--HHHHHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 3579999999999999999999988777666666664 2211 11 1222221111111111223344566666666
Q ss_pred HHh-cCceEEEEcCC
Q 038919 245 RLR-QKKVLLVIDDV 258 (483)
Q Consensus 245 ~l~-~~~~LlVlDdv 258 (483)
.++ +..-+||+|-|
T Consensus 1504 ~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHcCCCCEEEEccH
Confidence 666 45669999988
No 294
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.07 E-value=0.27 Score=45.84 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
++++...+. ..+++|.|++|+|||||...+....
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcccc
Confidence 444555544 2489999999999999999987643
No 295
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.05 E-value=0.028 Score=50.71 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+++|.|+.|+|||||.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 296
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.93 E-value=0.055 Score=49.56 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
++|+|.|-||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 567889999999999999999888755
No 297
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.92 E-value=0.032 Score=55.01 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=24.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+.+|.|+|.+|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999877644
No 298
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.90 E-value=0.087 Score=50.11 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
....+++|.|++|+|||||...+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34689999999999999999999876544
No 299
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.89 E-value=0.033 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
++|+|.|++|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998654
No 300
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.89 E-value=0.024 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998763
No 301
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.86 E-value=0.034 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+..|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998764
No 302
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.86 E-value=0.086 Score=50.28 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
....+++|+|.+|+|||||+..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999876654
No 303
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.81 E-value=0.06 Score=54.49 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
...+|.++|++|+||||+|+.++..+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998775444
No 304
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.77 E-value=0.49 Score=42.13 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCChhHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~ 187 (483)
+.+.|.|+.|+||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998776554
No 305
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.76 E-value=0.073 Score=46.97 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999988654
No 306
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.76 E-value=0.47 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
....++|+|.+|+|||||...+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 345789999999999999998875
No 307
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.76 E-value=0.03 Score=51.26 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||.+.++.-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999988643
No 308
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.74 E-value=0.034 Score=50.24 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998863
No 309
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.71 E-value=0.032 Score=50.59 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..+++|.|+.|+|||||.+.++.-+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999998865443
No 310
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.69 E-value=0.23 Score=43.04 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=26.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
.|+|-|.-|+||||.++.+++.+......+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887764444444
No 311
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.68 E-value=0.036 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 312
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.67 E-value=0.03 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||++.++.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999998763
No 313
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.65 E-value=0.038 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998874
No 314
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.64 E-value=0.033 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++.-+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4689999999999999999988643
No 315
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.60 E-value=0.059 Score=50.32 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+++|+|+.|+|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34789999999999999999998766
No 316
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.59 E-value=0.032 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998863
No 317
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.59 E-value=0.067 Score=49.64 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=27.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEec
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV 203 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 203 (483)
++|+|.|-||+||||+|..++..+... ...+.+.+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~-G~rVlliD~ 38 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM-GKKVMIVGC 38 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 678889999999999999999887654 223444333
No 318
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.53 E-value=0.032 Score=51.14 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999998863
No 319
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.52 E-value=0.033 Score=50.83 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 320
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.50 E-value=0.035 Score=50.54 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998864
No 321
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.50 E-value=0.14 Score=45.34 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999998765
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.49 E-value=0.04 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.-.++|.|.+|+|||||...+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 323
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.48 E-value=0.028 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+++|.|+.|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999988643
No 324
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.48 E-value=0.036 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++.-+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999988644
No 325
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.43 E-value=0.035 Score=50.30 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998764
No 326
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.41 E-value=0.11 Score=46.31 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 327
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.41 E-value=0.052 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 328
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.39 E-value=0.05 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.+-+.|.|.+|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357899999999999999999885
No 329
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.38 E-value=0.039 Score=56.10 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+++|.|++|+|||||++.++..+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 4789999999999999999999987653
No 330
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.38 E-value=0.043 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-.++|.|.+|+|||||...+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 331
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.36 E-value=0.039 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998864
No 332
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.35 E-value=0.047 Score=47.76 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.+|+|.|+.|+||||+++.+++++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998753
No 333
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.35 E-value=0.16 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.026 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~ 187 (483)
...+++|+|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999884
No 334
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.34 E-value=0.085 Score=46.23 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=25.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFD 195 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 195 (483)
..|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998876544
No 335
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.34 E-value=0.048 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
-.++|.|++|+||||+|+.+++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 336
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.28 E-value=0.091 Score=53.48 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=32.8
Q ss_pred hhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 145 LVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 145 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.+-|.+..+.+.+..........+|.++|++|+||||+|+.+..++..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 334444445555554322223578999999999999999999987654
No 337
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.28 E-value=0.053 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..++|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999986
No 338
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.27 E-value=0.041 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999998763
No 339
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.22 E-value=0.57 Score=41.85 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 148 IESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 148 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
|..+.+.+..++.. +-+.|+|+.|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 44455555555542 127889999999999998887764
No 340
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.20 E-value=0.043 Score=53.58 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...+++|.|++|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4579999999999999999999873
No 341
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.16 E-value=0.16 Score=49.68 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.+.++|.|.+|+|||+|+.++++....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 356889999999999999999887554
No 342
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.066 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.121 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
....|+|.|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998864
No 343
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.11 E-value=0.041 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||.+.++.-+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999988643
No 344
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.11 E-value=0.04 Score=47.17 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~ 188 (483)
-|+|.|.+|+|||||...++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999876
No 345
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.09 E-value=0.15 Score=50.20 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.+.++|.|.+|+|||+|+.++++....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 366888999999999999999986543
No 346
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.07 E-value=0.042 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||.+.++.-+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999988644
No 347
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.06 E-value=0.17 Score=49.61 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+.++|.|.+|+|||+|+.++++...
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 35688999999999999999988654
No 348
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.06 E-value=0.08 Score=54.17 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...+|.|+|++|+||||+|+.+..++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999998764
No 349
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.06 E-value=0.1 Score=49.97 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...+|+|+|.+|+|||||...+.......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 36899999999999999999998765443
No 350
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.04 E-value=0.5 Score=56.74 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccc
Q 038919 155 LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRN 234 (483)
Q Consensus 155 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~ 234 (483)
+..++..+ +-+.++|++|+|||++|+.+.......-...+-.. ...+
T Consensus 1260 l~~~l~~~----~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infs-----------------------------a~ts 1306 (2695)
T 4akg_A 1260 FYDLLNSK----RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS-----------------------------KDTT 1306 (2695)
T ss_dssp HHHHHHHT----CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECC-----------------------------TTCC
T ss_pred HHHHHHCC----CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEee-----------------------------cCCC
Q ss_pred hhhhHHHHHHHH---------------hcCceEEEEcCCCCH-----------HHHHHHhcCCCCCCCCc---------E
Q 038919 235 VYDGINMIGRRL---------------RQKKVLLVIDDVAHV-----------EQLRRLAGKRDWFGPGS---------R 279 (483)
Q Consensus 235 ~~~~~~~l~~~l---------------~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~---------~ 279 (483)
.......+...+ .++++++.+||++-+ +.++.++..-.+..... .
T Consensus 1307 ~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~ 1386 (2695)
T 4akg_A 1307 TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIH 1386 (2695)
T ss_dssp HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEE
T ss_pred HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEE
Q ss_pred EEEEcCCHh-------HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHh
Q 038919 280 IIITTRDEH-------LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYA 338 (483)
Q Consensus 280 iliTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 338 (483)
+|.++-.+. -........++.++..+.++-..+|.......-...+.....+..++..+
T Consensus 1387 lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1387 IVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred EEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 351
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.03 E-value=0.22 Score=47.86 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
+.+.|+|+|.+|+|||||...+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4567999999999999999998864
No 352
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.02 E-value=0.053 Score=51.18 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998753
No 353
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.00 E-value=0.1 Score=51.10 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=27.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+++|+|++|+||||++..++..+... ...+.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 45789999999999999999999877654 3334443
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.98 E-value=0.05 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+.+|+|+.|+|||||+.+++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999988754
No 355
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.98 E-value=0.047 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+|+|+|+.|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998864
No 356
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.96 E-value=0.043 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.108 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...+++|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998775
No 357
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.96 E-value=0.16 Score=50.38 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHH-HHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLA-RVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa-~~~~~~~~ 191 (483)
.+.++|.|.+|+|||+|| ..+++...
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 467899999999999995 56666655
No 358
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.89 E-value=0.14 Score=48.93 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
....++.+.|-||+||||+|..++..+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 446778888999999999999999887665
No 359
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.87 E-value=0.1 Score=52.24 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
..+|.++|++|+||||+++.++..+...|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 46899999999999999999998765444
No 360
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.83 E-value=0.44 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..++|+|+.|+|||||++.+..-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988763
No 361
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.83 E-value=0.099 Score=52.11 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFD 195 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 195 (483)
+.+.|.|.+|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999987765533
No 362
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.75 E-value=0.11 Score=45.14 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=25.2
Q ss_pred EEEEEe-CCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 167 RMIGIW-GMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 167 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
++|+|+ +-||+||||+|..++..+...-. .+.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~-~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGY-NIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEE
Confidence 467776 67999999999999988776433 34444
No 363
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.73 E-value=0.26 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.141 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCChhHHHH-HHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLAR-VVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 190 (483)
.+.++|.|.+|+|||+||. .+++..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh
Confidence 4678999999999999964 666654
No 364
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.73 E-value=2 Score=43.54 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhccc---ceeEEEEecc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEF---DGSSFLADVK 204 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~ 204 (483)
+-+.|.|.+|+|||+++..+...+...+ ...+++.+..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 5689999999999999998887665433 2456665544
No 365
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.70 E-value=0.034 Score=50.86 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
....|+|.|..|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999888653
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.68 E-value=0.098 Score=46.89 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...|+|.|+.|+||||+++.+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987654
No 367
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.68 E-value=0.058 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 368
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.63 E-value=0.083 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 369
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.62 E-value=0.4 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHH
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
...++..|.|.+|.||||+..+.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999988775
No 370
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.61 E-value=0.077 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999863
No 371
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.61 E-value=0.054 Score=49.53 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+++|.|+.|+|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998755
No 372
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.60 E-value=0.13 Score=49.07 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh--cccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS--HEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 201 (483)
..+++.+.|-||+||||+|..++..+. .. ...+.+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~-g~~vlli 54 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQP-NEQFLLI 54 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCT-TSCEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEE
Confidence 458999999999999999999998877 44 3334444
No 373
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.57 E-value=0.19 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCChhHHHH-HHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLAR-VVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 190 (483)
.+.++|.|.+|+|||+||. .+++..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh
Confidence 4678999999999999964 666654
No 374
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.56 E-value=0.059 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 375
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.50 E-value=0.081 Score=47.67 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=25.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHhhcccceeEEEEec
Q 038919 169 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV 203 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 203 (483)
|+|.|-||+||||+|..++..+...- ..+.+.+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g-~~VlliD~ 36 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY-DKIYAVDG 36 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC-SCEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC-CeEEEEeC
Confidence 56699999999999999999887653 33444433
No 376
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.47 E-value=0.086 Score=49.86 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..++...|-||+||||+|..++..+...-. .+.+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGK-KTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCC-cEEEE
Confidence 577888999999999999999988776533 34443
No 377
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.46 E-value=0.23 Score=43.75 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..|+|.|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999988654
No 378
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.46 E-value=0.14 Score=48.53 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=28.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..+++.+.|-||+||||+|..++..+...-..+..+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 357889999999999999999998887653333333
No 379
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.44 E-value=0.34 Score=52.42 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..+++|.|+.|+|||||.+.++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999984
No 380
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.43 E-value=0.066 Score=51.18 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999999863
No 381
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.43 E-value=0.089 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.--|+|.|.+|+|||||...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35689999999999999999875
No 382
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.41 E-value=0.093 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+|.|+|++|+||||+|+.+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999874
No 383
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.40 E-value=0.074 Score=44.18 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.-|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998863
No 384
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.40 E-value=0.074 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998863
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.39 E-value=0.072 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-.|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 386
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.37 E-value=0.083 Score=46.46 Aligned_cols=25 Identities=28% Similarity=0.121 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
....|.|.|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999874
No 387
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.32 E-value=0.092 Score=46.66 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+|+|.|+.|+||||+|+.+++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999764
No 388
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.32 E-value=0.1 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 389
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.28 E-value=0.17 Score=45.38 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=27.4
Q ss_pred cEEEEEe-CCCCCChhHHHHHHHHHhhcccceeEEEEec
Q 038919 166 VRMIGIW-GMGGLGKTTLARVVYDLISHEFDGSSFLADV 203 (483)
Q Consensus 166 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 203 (483)
.++|+|+ +-||+||||+|..++..+.......+.+.+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 4667766 5699999999999999887763334444444
No 390
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.27 E-value=0.077 Score=44.31 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 391
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.25 E-value=0.079 Score=44.03 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 392
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.23 E-value=0.079 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..+++|.|+.|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999998876
No 393
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.23 E-value=0.075 Score=50.77 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999863
No 394
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.21 E-value=0.08 Score=44.11 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 395
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.21 E-value=0.086 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356789999999999999999876
No 396
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.20 E-value=0.08 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 468999999999999999999863
No 397
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.17 E-value=0.077 Score=44.30 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
--|+|.|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999863
No 398
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.14 E-value=0.082 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 468999999999999999999863
No 399
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.12 E-value=0.082 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 368999999999999999999863
No 400
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.12 E-value=0.083 Score=44.06 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 401
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.10 E-value=0.085 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=19.0
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 038919 169 IGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~ 189 (483)
|+|.|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 402
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.08 E-value=0.05 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 468999999999999999988763
No 403
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.07 E-value=0.075 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
--|+|.|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999999886
No 404
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.05 E-value=0.084 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999888764
No 405
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.05 E-value=0.2 Score=52.23 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 150 SRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 150 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+.+.+...|... .+..|+||||+|||+.+.++...+.
T Consensus 193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4566677777632 4788999999999987766665443
No 406
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.02 E-value=0.085 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998863
No 407
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.02 E-value=0.086 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998863
No 408
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.02 E-value=0.074 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 409
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.01 E-value=0.13 Score=47.99 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+++|.+.+. ..+++|.|++|+|||||...+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 445555554 2589999999999999999998 43
No 410
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.00 E-value=0.1 Score=43.08 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.++.+|+|+.|.|||||..+++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999887643
No 411
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.00 E-value=0.078 Score=45.22 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 412
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.98 E-value=0.29 Score=44.88 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=27.5
Q ss_pred CCcEEEEEeCC-CCCChhHHHHHHHHHhhcccceeEEE
Q 038919 164 NDVRMIGIWGM-GGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 164 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
...++|.|+|. ||+||||+|..++..+...-..+..+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 34678888865 89999999999998887653334443
No 413
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.96 E-value=0.16 Score=49.04 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=28.1
Q ss_pred CCcEEEEEeC-CCCCChhHHHHHHHHHhhcccceeEEEEec
Q 038919 164 NDVRMIGIWG-MGGLGKTTLARVVYDLISHEFDGSSFLADV 203 (483)
Q Consensus 164 ~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 203 (483)
...++|+|+| -||+||||+|..++..+...-. .+.+.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~-rVlliD~ 180 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGK-KVFYLNI 180 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCC-CEEEEEC
Confidence 3467888875 8999999999999988766533 3444443
No 414
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.95 E-value=0.088 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..+++|.|+.|+|||||.+.++-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999986
No 415
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.94 E-value=0.22 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
...+++|+|+.|.|||||.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 357999999999999999998764
No 416
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.89 E-value=0.092 Score=43.72 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998863
No 417
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.88 E-value=0.09 Score=45.17 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998763
No 418
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.88 E-value=0.21 Score=43.16 Aligned_cols=28 Identities=14% Similarity=-0.218 Sum_probs=24.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+..++|+.|.||||.+...+++...+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4799999999999999999999887544
No 419
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.85 E-value=0.18 Score=46.00 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=25.0
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 156 KFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 156 ~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.+.+.........|+|.|.+|+|||||...+...
T Consensus 26 ~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 26 FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3333333334567899999999999999999863
No 420
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.85 E-value=0.25 Score=46.01 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCcEEEEEeCC-CCCChhHHHHHHHHHhhcccceeEEE
Q 038919 164 NDVRMIGIWGM-GGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 164 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
...++|.|+|. ||+||||+|..++..+...-..++.+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 34578888886 89999999999998877653333333
No 421
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.84 E-value=0.087 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 368999999999999999999863
No 422
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.84 E-value=0.085 Score=44.00 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998853
No 423
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.84 E-value=0.087 Score=50.77 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...++|+|+.|+|||||++.++..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999886543
No 424
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.81 E-value=0.093 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46889999999999999998864
No 425
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.81 E-value=0.036 Score=57.13 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=33.8
Q ss_pred HhhhchhHHHHHHHHHhhcCCC---------CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESRLEKLKFLMGAGCN---------DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.++|.+...+.+...+..+.. +..-+.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 6789998766655444442210 00158999999999999999998754
No 426
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.80 E-value=0.35 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCCChhHHH-HHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLA-RVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa-~~~~~~ 189 (483)
.+.++|.|..|+|||+|+ ..++++
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh
Confidence 467899999999999997 456664
No 427
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.80 E-value=0.077 Score=44.16 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~ 188 (483)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 428
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.78 E-value=0.12 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999998874
No 429
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.77 E-value=0.28 Score=47.72 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=23.0
Q ss_pred CcEEEEEe-CCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIW-GMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++|+|+ |-||+||||+|..++..+..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 45677765 88999999999999988763
No 430
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.76 E-value=0.33 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.116 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCChhHHHH-HHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLAR-VVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 190 (483)
.+.++|.|.+|+|||+||. .+++..
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 3678999999999999964 666654
No 431
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.76 E-value=0.093 Score=44.22 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998853
No 432
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.74 E-value=0.11 Score=45.94 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...|+|.|+.|+||||++..+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998875
No 433
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.71 E-value=0.076 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=19.3
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 038919 169 IGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~ 189 (483)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 434
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.71 E-value=0.098 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 435
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.70 E-value=0.099 Score=43.66 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999763
No 436
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.69 E-value=0.25 Score=50.55 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+++.|+|.+|+||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998876654
No 437
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.64 E-value=0.09 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998863
No 438
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.63 E-value=0.14 Score=44.39 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+|+|+|++|+||+++|..+.+++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 35799999999999999999887755
No 439
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.57 E-value=0.1 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
--|+|.|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 440
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.55 E-value=0.073 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 368999999999999999999864
No 441
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.55 E-value=0.1 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 442
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.54 E-value=0.1 Score=44.56 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999863
No 443
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.54 E-value=0.11 Score=44.60 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|.|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998864
No 444
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.54 E-value=0.2 Score=45.85 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.....|++.|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998863
No 445
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.51 E-value=0.099 Score=44.87 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.--|+|.|.+|+|||||.+.+......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 346899999999999999766654433
No 446
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.50 E-value=0.11 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998863
No 447
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.49 E-value=0.11 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999863
No 448
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.48 E-value=0.079 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998864
No 449
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.41 E-value=0.11 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
--|+|.|.+|+|||||...+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999885
No 450
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.36 E-value=0.15 Score=47.41 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCCcEEEEEe---CCCCCChhHHHHHHHHHhhcc
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIW---GMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~---G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.++.+.+... .++++|+ +-||+||||+|..++..+...
T Consensus 22 ~~~~~~r~~~~~---~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 22 ILEELRRILSNK---NEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp HHHHHHHHHHHH---CSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC---CcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 344455544422 2456666 499999999999999877654
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.33 E-value=0.11 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999988763
No 452
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.32 E-value=0.11 Score=44.00 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999998863
No 453
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.28 E-value=0.11 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998863
No 454
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.27 E-value=0.1 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
--|+|.|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999885
No 455
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.27 E-value=0.096 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998863
No 456
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.25 E-value=0.1 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 457
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.25 E-value=0.11 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998864
No 458
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.25 E-value=0.086 Score=45.63 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~ 187 (483)
..-|+|.|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999885
No 459
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.22 E-value=0.12 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
...-|+|.|.+|+|||||...+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999875
No 460
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.22 E-value=0.12 Score=43.65 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998863
No 461
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.15 E-value=0.15 Score=48.69 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..+++|.|+.|+|||||.+.++.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 478999999999999999999987654
No 462
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.11 E-value=0.11 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 468999999999999999998863
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.11 E-value=0.5 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..|+|+|+.|+|||||+..+..
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3699999999999999999876
No 464
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.07 E-value=0.12 Score=44.51 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999874
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.06 E-value=0.11 Score=43.91 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
...|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45789999999999999999985
No 466
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.06 E-value=0.07 Score=51.03 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999863
No 467
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.06 E-value=0.12 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998863
No 468
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.04 E-value=0.24 Score=46.82 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...++.+.|-||+||||+|..++..+...
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~ 46 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKV 46 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTS
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHC
Confidence 35678889999999999999999888765
No 469
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.04 E-value=0.13 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 470
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.04 E-value=0.12 Score=44.80 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998864
No 471
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.02 E-value=0.11 Score=50.02 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEe
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLAD 202 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 202 (483)
..++|+|+.|+|||||++.++..+... .+.+.+.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~ 210 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIED 210 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECC
Confidence 589999999999999999998865442 34455543
No 472
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.00 E-value=0.074 Score=46.42 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
....++|.|.+|+|||||...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999988764
No 473
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.95 E-value=0.12 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998864
No 474
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.95 E-value=0.13 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 475
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.94 E-value=0.48 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.+.++|.|..|+|||+|+.++++.
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc
Confidence 468999999999999999998775
No 476
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.93 E-value=0.12 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45899999999999999998864
No 477
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.91 E-value=0.12 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 478
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.91 E-value=0.13 Score=43.97 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998864
No 479
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.91 E-value=0.13 Score=44.07 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
--|+|.|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998863
No 480
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.90 E-value=0.13 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998874
No 481
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.88 E-value=0.14 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999988863
No 482
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.83 E-value=0.22 Score=43.97 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=24.2
Q ss_pred EEEEEeC-CCCCChhHHHHHHHHHhhcccceeEE
Q 038919 167 RMIGIWG-MGGLGKTTLARVVYDLISHEFDGSSF 199 (483)
Q Consensus 167 ~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~ 199 (483)
+++.|+| -||+||||++..++..+...-..+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 4677766 58999999999999887665333333
No 483
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.82 E-value=0.13 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.--|+|.|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999998873
No 484
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.81 E-value=0.097 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
...|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998874
No 485
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.79 E-value=0.14 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998763
No 486
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.79 E-value=0.15 Score=44.71 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.-.|+|+|..|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 487
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.77 E-value=0.12 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 488
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.77 E-value=0.14 Score=44.00 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999863
No 489
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.75 E-value=0.14 Score=44.30 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 467899999999999999998763
No 490
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.72 E-value=0.12 Score=44.67 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..-|+|.|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999999864
No 491
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.68 E-value=0.12 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998863
No 492
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.65 E-value=0.14 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~ 188 (483)
-|+|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 478999999999999999875
No 493
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.62 E-value=0.44 Score=44.01 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=31.7
Q ss_pred HHHHHHHHhhc--CCCCcEEEEEeC-CCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 151 RLEKLKFLMGA--GCNDVRMIGIWG-MGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 151 ~l~~l~~~L~~--~~~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
.+..|...|.. .....++|.|+| -||+||||+|..++..+...-..++.+
T Consensus 75 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 75 AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 34444443332 223456777765 589999999999999887653333443
No 494
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.61 E-value=0.15 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999864
No 495
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.59 E-value=0.14 Score=43.74 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
-.|+|.|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 496
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.57 E-value=0.22 Score=51.26 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+++.+.|.||+||||+|..++..+...
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~ 35 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQ 35 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHC
Confidence 35788999999999999999999877655
No 497
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.55 E-value=0.16 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567999999999999999998863
No 498
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.50 E-value=0.36 Score=54.63 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++|+|+.|+|||||++.+...+
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 479999999999999999887643
No 499
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.48 E-value=0.16 Score=43.62 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
....|+|.|.+|+|||||...+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999875
No 500
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.45 E-value=0.14 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.--|+|.|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45689999999999999999886
Done!