Query 038921
Match_columns 197
No_of_seqs 128 out of 224
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqq_A Conserved oligomeric go 67.5 7.6 0.00026 32.9 5.1 39 152-190 82-122 (204)
2 1xc0_A Pardaxin P-4, PA4; BEND 40.6 14 0.00048 22.7 1.7 19 89-107 5-23 (33)
3 2w9j_A Signal recognition part 32.5 21 0.00073 26.2 2.0 18 144-161 64-81 (91)
4 1e8o_B SRP14, signal recogniti 32.3 21 0.0007 26.9 1.9 18 143-160 71-88 (106)
5 3swk_A Vimentin; cytoskeleton, 29.7 1.5E+02 0.0052 21.1 6.2 42 146-187 22-76 (86)
6 2knj_A Microplusin preprotein; 28.7 34 0.0012 25.4 2.5 28 102-129 12-39 (90)
7 3fp5_A Acyl-COA binding protei 27.2 62 0.0021 24.2 3.8 34 146-181 72-105 (106)
8 3j0g_M E3 protein; alphavirus, 24.6 30 0.001 24.0 1.5 23 88-110 32-54 (59)
9 3mko_A Glycoprotein C; trimeri 24.0 1E+02 0.0034 24.5 4.5 36 152-187 12-50 (137)
10 3mq9_A Bone marrow stromal ant 21.5 2.5E+02 0.0086 24.4 7.1 43 143-185 371-422 (471)
11 2izy_A CAMP-dependent protein 20.3 1.9E+02 0.0065 18.9 5.3 47 112-168 4-50 (54)
No 1
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=67.48 E-value=7.6 Score=32.92 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHhhcCC
Q 038921 152 ETYSDMLAKYKSDLARP--FDEATTFLNKVELQLRNLCTTT 190 (197)
Q Consensus 152 eaYc~mL~kykEEL~rP--f~EA~~F~~~iE~QL~~L~~~~ 190 (197)
-.|-.-|-....-|+++ +.|++.+++++=..|..+|+..
T Consensus 82 l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~ 122 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIE 122 (204)
T ss_dssp HHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 46888888888888888 5899999999999999999974
No 2
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=40.57 E-value=14 Score=22.67 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=15.6
Q ss_pred HHHHHhhCCChHHHHHHHH
Q 038921 89 IKAKIASHPCYPRLLEAYI 107 (197)
Q Consensus 89 iKAkI~sHPlYp~LL~Ayi 107 (197)
+--||++-|++..||+|--
T Consensus 5 lipkiissplfktllsavg 23 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVG 23 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHH
T ss_pred hhhHHHccHHHHHHHHHHH
Confidence 3468999999999998843
No 3
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=32.50 E-value=21 Score=26.21 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=15.5
Q ss_pred CChhhhHHHHHHHHHHHH
Q 038921 144 DPELDEFMETYSDMLAKY 161 (197)
Q Consensus 144 DPELDqFMeaYc~mL~ky 161 (197)
-.+|+.|+.+|+.+|..-
T Consensus 64 ~~~l~~F~~~Y~~v~K~~ 81 (91)
T 2w9j_A 64 LDYFTDFFQSYAEVXKGQ 81 (91)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 469999999999998754
No 4
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=32.29 E-value=21 Score=26.89 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=15.4
Q ss_pred CCChhhhHHHHHHHHHHH
Q 038921 143 ADPELDEFMETYSDMLAK 160 (197)
Q Consensus 143 ~DPELDqFMeaYc~mL~k 160 (197)
.--+|+.|+.+|+.+|..
T Consensus 71 ~~~dl~~F~~~Y~~v~K~ 88 (106)
T 1e8o_B 71 SSKEVNKFQMAYSNLLRA 88 (106)
T ss_dssp ETTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 456999999999999864
No 5
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.71 E-value=1.5e+02 Score=21.09 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHHHHHH-------------hhchHHHHHHHHHHHHHHHHHhh
Q 038921 146 ELDEFMETYSDMLAKYKSD-------------LARPFDEATTFLNKVELQLRNLC 187 (197)
Q Consensus 146 ELDqFMeaYc~mL~kykEE-------------L~rPf~EA~~F~~~iE~QL~~L~ 187 (197)
|+|..-.+--+.=.||.+| |.|-+++|...--.+|.|+.+|.
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556677766 44557899999999999999885
No 6
>2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus}
Probab=28.67 E-value=34 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.4
Q ss_pred HHHHHHhccccCCchhhHhHHHHHHhhh
Q 038921 102 LLEAYIDCQKVGAPPEIAYLLDAIRSEK 129 (197)
Q Consensus 102 LL~AyidC~KVGAPpev~~~Ldei~~~~ 129 (197)
-|.+-++|+|-.+|++.-.+||++.++.
T Consensus 12 eL~~~l~Cvr~~a~~~l~~kLd~v~~~L 39 (90)
T 2knj_A 12 ALVTELECIRLRISPETNAAFDNAVQQL 39 (90)
T ss_dssp HHHHHHHHHHTCCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3677889999999999999999987765
No 7
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=27.16 E-value=62 Score=24.24 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 038921 146 ELDEFMETYSDMLAKYKSDLARPFDEATTFLNKVEL 181 (197)
Q Consensus 146 ELDqFMeaYc~mL~kykEEL~rPf~EA~~F~~~iE~ 181 (197)
.-++=|+.|++++.+.... .-..||..++.+||.
T Consensus 72 S~eeA~~~YI~~v~~l~~~--~~~~~~~~~~~~le~ 105 (106)
T 3fp5_A 72 SKEVAYQKYVEKLLEILKK--ADTEESKKYIAEIEA 105 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcc--cCcHHHHHHHHHHhc
Confidence 3567799999999999888 345699999999884
No 8
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=24.58 E-value=30 Score=24.05 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=19.1
Q ss_pred HHHHHHhhCCChHHHHHHHHhcc
Q 038921 88 VIKAKIASHPCYPRLLEAYIDCQ 110 (197)
Q Consensus 88 ~iKAkI~sHPlYp~LL~AyidC~ 110 (197)
.|=..=+.||-|-.||+|-+.|.
T Consensus 32 ~mLe~Nvd~pgY~~LL~a~l~C~ 54 (59)
T 3j0g_M 32 AMLSVNVDNPGYDELLEAAVKCP 54 (59)
T ss_dssp HHHHHTSSSTTHHHHHHHHHSCC
T ss_pred HHHHHhCCCccHHHHHHHHhcCc
Confidence 34455678999999999999995
No 9
>3mko_A Glycoprotein C; trimeric coiled-coil, viral protein; 1.80A {Lymphocytic choriomeningitis virus}
Probab=23.95 E-value=1e+02 Score=24.48 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=26.2
Q ss_pred HHHHHHHHHH---HHHhhchHHHHHHHHHHHHHHHHHhh
Q 038921 152 ETYSDMLAKY---KSDLARPFDEATTFLNKVELQLRNLC 187 (197)
Q Consensus 152 eaYc~mL~ky---kEEL~rPf~EA~~F~~~iE~QL~~L~ 187 (197)
|.+|+||+=| |.++.+--.|+..-++-|-+..++|-
T Consensus 12 eEFCDMLRLfdfNk~AI~~L~~~~~~~lnl~~~aiNsLI 50 (137)
T 3mko_A 12 EEFSDMLRLIDYNKAALSKFKQDVESALHVFKTTVNSLI 50 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999877 56666666777777777777776663
No 10
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.47 E-value=2.5e+02 Score=24.42 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=36.5
Q ss_pred CCChhhhHHHHHHHHHHHHHHH---------hhchHHHHHHHHHHHHHHHHH
Q 038921 143 ADPELDEFMETYSDMLAKYKSD---------LARPFDEATTFLNKVELQLRN 185 (197)
Q Consensus 143 ~DPELDqFMeaYc~mL~kykEE---------L~rPf~EA~~F~~~iE~QL~~ 185 (197)
.+..|+++-+..-.+|.+++.+ |+|-+.|+..=+-.+|.|-+.
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 3457889999999999999988 899999999988899988764
No 11
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=20.25 E-value=1.9e+02 Score=18.91 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=32.3
Q ss_pred cCCchhhHhHHHHHHhhhhhhccCCCCCCCCCCChhhhHHHHHHHHHHHHHHHhhch
Q 038921 112 VGAPPEIAYLLDAIRSEKDLYRRDSVPTCFGADPELDEFMETYSDMLAKYKSDLARP 168 (197)
Q Consensus 112 VGAPpev~~~Ldei~~~~~~~~~~~~~~~~g~DPELDqFMeaYc~mL~kykEEL~rP 168 (197)
+-.|+++-..|.+..++.-..++ ..+=+|...|-.-|.+.+++|+.+
T Consensus 4 ~~ip~~l~~lL~~f~~evlr~qP----------~Di~~Faa~YF~~L~~~~~~~~~~ 50 (54)
T 2izy_A 4 IQIPPGLTELLQGYTVEVLRQQP----------PDLVDFAVEYFTRLREARRGLEHH 50 (54)
T ss_dssp -CCCTTHHHHHHHHHHHHHHHCC----------SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHhHHHHhhc
Confidence 34577777777766554432222 146789999999999999998754
Done!