Query 038921
Match_columns 197
No_of_seqs 128 out of 224
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038921.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038921hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f66c1 a.2.17.3 (C:142-206) V 73.7 2 0.00014 28.8 4.1 24 141-164 34-57 (65)
2 d1914a2 d.49.1.1 (A:2001-2097) 29.3 13 0.00095 25.9 2.1 19 143-161 72-90 (97)
3 d1xoda1 b.55.1.4 (A:10-123) Sp 27.6 20 0.0015 25.7 3.0 20 170-189 95-114 (114)
4 d1z5za1 c.37.1.19 (A:663-906) 16.0 96 0.007 22.7 4.9 38 152-190 16-55 (244)
5 d2e9xa1 a.278.1.1 (A:1-144) DN 15.9 40 0.0029 24.5 2.5 18 148-165 111-128 (144)
6 d1fvpa_ c.1.16.2 (A:) Non-fluo 15.8 53 0.0038 24.4 3.3 67 97-163 159-226 (231)
7 d1uklc_ a.38.1.1 (C:) SREBP-2 14.8 64 0.0047 19.7 3.0 19 169-187 28-46 (61)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 12.1 1.8E+02 0.013 18.4 5.1 37 152-188 51-87 (88)
9 d2pv7a1 a.100.1.12 (A:244-371) 11.4 1.8E+02 0.013 19.5 4.9 36 146-181 76-115 (128)
10 d1oyja1 a.45.1.1 (A:86-230) Cl 11.1 1E+02 0.0075 20.8 3.5 36 150-185 30-65 (145)
No 1
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=73.75 E-value=2 Score=28.83 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=20.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHH
Q 038921 141 FGADPELDEFMETYSDMLAKYKSD 164 (197)
Q Consensus 141 ~g~DPELDqFMeaYc~mL~kykEE 164 (197)
+..+.|||+|.+.|.++=+.|+-.
T Consensus 34 ~~~s~elD~Fi~qYl~~RTeYH~r 57 (65)
T d2f66c1 34 IDSADDLDQFIKNYLDIRTQYHLR 57 (65)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999754
No 2
>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.27 E-value=13 Score=25.87 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.8
Q ss_pred CCChhhhHHHHHHHHHHHH
Q 038921 143 ADPELDEFMETYSDMLAKY 161 (197)
Q Consensus 143 ~DPELDqFMeaYc~mL~ky 161 (197)
.-.+|+.|+.+|+.+|...
T Consensus 72 ~~~~~~~F~~~Y~~v~Ka~ 90 (97)
T d1914a2 72 SSKEVNKFQMAYSNLLRAN 90 (97)
T ss_dssp ETTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 3568999999999998653
No 3
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}
Probab=27.58 E-value=20 Score=25.66 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 038921 170 DEATTFLNKVELQLRNLCTT 189 (197)
Q Consensus 170 ~EA~~F~~~iE~QL~~L~~~ 189 (197)
.||..|.+.|+..|..|..|
T Consensus 95 ~eA~~F~~~v~~ale~l~~g 114 (114)
T d1xoda1 95 ADARAFDRGIRRAIEDLSQG 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 58888888888888888654
No 4
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.97 E-value=96 Score=22.68 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHhhcCC
Q 038921 152 ETYSDMLAKYKSDLARPF--DEATTFLNKVELQLRNLCTTT 190 (197)
Q Consensus 152 eaYc~mL~kykEEL~rPf--~EA~~F~~~iE~QL~~L~~~~ 190 (197)
+.|..++.++++.+.... ......+..| ++|+.+|.++
T Consensus 16 ~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l-~~Lrqic~hP 55 (244)
T d1z5za1 16 AMYKAEVENLFNNIDSVTGIKRKGMILSTL-LKLKQIVDHP 55 (244)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHH-HHHHhhhcCC
Confidence 578888888888776643 2223334444 6788888765
No 5
>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein PSF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.87 E-value=40 Score=24.48 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 038921 148 DEFMETYSDMLAKYKSDL 165 (197)
Q Consensus 148 DqFMeaYc~mL~kykEEL 165 (197)
-+|...|+.+|.+|+..+
T Consensus 111 ~eyf~~Ys~lL~~Y~~~~ 128 (144)
T d2e9xa1 111 MEWFNNYKRSLATYMRSL 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 468899999999998765
No 6
>d1fvpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390) {Photobacterium phosphoreum [TaxId: 659]}
Probab=15.83 E-value=53 Score=24.40 Aligned_cols=67 Identities=7% Similarity=0.087 Sum_probs=36.8
Q ss_pred CChHHHHHHHHhccccCCchhhHhHHHHHHhhhhhhccC-CCCCCCCCCChhhhHHHHHHHHHHHHHH
Q 038921 97 PCYPRLLEAYIDCQKVGAPPEIAYLLDAIRSEKDLYRRD-SVPTCFGADPELDEFMETYSDMLAKYKS 163 (197)
Q Consensus 97 PlYp~LL~AyidC~KVGAPpev~~~Ldei~~~~~~~~~~-~~~~~~g~DPELDqFMeaYc~mL~kykE 163 (197)
|.....++.-+++.-||+|.+++.+|.++..+..-...- ..-..++.--+--.+|+.+-.-..+|+.
T Consensus 159 ~~~~~~~e~~~~~~~iGTpeev~e~I~~l~~e~~G~~~~ll~f~~~~~~d~~~~si~~~~~~Vi~~~~ 226 (231)
T d1fvpa_ 159 SNFNGSIDSIIQSNVTGSYKDCLSYVANLAGKFDNTVDFLLCFESMQDQNKKKSVMIDLNNQVIKFRQ 226 (231)
T ss_dssp SSTTTCSHHHHHHSCEESSHHHHHHHHHHHHHTTTCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhccCcCCHHHHHHHHHHHHHhhCCCCEEEEecCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 445555666667778999999999998876543211110 0111222222444555555555555544
No 7
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.76 E-value=64 Score=19.71 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038921 169 FDEATTFLNKVELQLRNLC 187 (197)
Q Consensus 169 f~EA~~F~~~iE~QL~~L~ 187 (197)
+++|+.+++.++.|...|.
T Consensus 28 L~~Ai~YI~~Lq~~~~~L~ 46 (61)
T d1uklc_ 28 LRKAIDYIKYLQQVNHKLR 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877764
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.12 E-value=1.8e+02 Score=18.45 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 038921 152 ETYSDMLAKYKSDLARPFDEATTFLNKVELQLRNLCT 188 (197)
Q Consensus 152 eaYc~mL~kykEEL~rPf~EA~~F~~~iE~QL~~L~~ 188 (197)
..|+.-|.+-.++|..-..+-..-...+..+|+.|.|
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 87 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5577777777777776666666666667777777643
No 9
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=11.37 E-value=1.8e+02 Score=19.47 Aligned_cols=36 Identities=11% Similarity=0.376 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHH----HHHhhchHHHHHHHHHHHHH
Q 038921 146 ELDEFMETYSDMLAKY----KSDLARPFDEATTFLNKVEL 181 (197)
Q Consensus 146 ELDqFMeaYc~mL~ky----kEEL~rPf~EA~~F~~~iE~ 181 (197)
.||+|.++.-++.... +++|.+-|++|..|+...-.
T Consensus 76 ~l~~~~~~l~~l~~~i~~~D~~~l~~~~~~a~~~~~~~~~ 115 (128)
T d2pv7a1 76 VIETLKQTYDEALTFFENNDRQGFIDAFHKVRDWFGDYSE 115 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHH
Confidence 3555555544444433 24555667888888766533
No 10
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=11.06 E-value=1e+02 Score=20.85 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 038921 150 FMETYSDMLAKYKSDLARPFDEATTFLNKVELQLRN 185 (197)
Q Consensus 150 FMeaYc~mL~kykEEL~rPf~EA~~F~~~iE~QL~~ 185 (197)
++.++..++.+=.++.++-.++....+..+|.+|..
T Consensus 30 i~~~~~~~~~~~~e~~e~a~~~~~~~L~~lE~~l~~ 65 (145)
T d1oyja1 30 LYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGD 65 (145)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444444455666677778888888888764
Done!