BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038923
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 1 MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
+ +RL E G+ +L+ + G T LHLA+ H+E ++KL
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADVNASDSDGK--TPLHLAAENGHKE----VVKLLL 57
Query: 61 EMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGL 120
A PN K + + ++ L++A E G +VVK LL+ + + DG
Sbjct: 58 SQGADPNAK-------------DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG- 103
Query: 121 TTSLHVAASAGH 132
T LH+AA GH
Sbjct: 104 KTPLHLAAENGH 115
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LHLA+ H+E ++KL A PN K + + ++ L++A E G
Sbjct: 72 TPLHLAAENGHKE----VVKLLLSQGADPNAK-------------DSDGKTPLHLAAENG 114
Query: 98 RHDVVKQLLNYPSVSLLEMDDGLT 121
+VVK LL+ + DG T
Sbjct: 115 HKEVVKLLLSQGADPNTSDSDGRT 138
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
V+ +++ +ALY A G D+V+ L P++ L + + T+LH AA G+
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGY 152
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 36 SNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYE 95
+T LHLA+R H E+ +LK + V+ ++ + + L++A +
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGAD-----------------VNALDFSGSTPLHLAAK 89
Query: 96 RGRHDVVKQLLNYPSVSLLEMDDGL-TTSLHVAASAGHL 133
RG ++V+ LL Y + + DD + +T LH+AA GHL
Sbjct: 90 RGHLEIVEVLLKYGAD--VNADDTIGSTPLHLAADTGHL 126
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAY 94
+ T LHLA+R H LE++KL E A N K ++N + L++A
Sbjct: 1 NGRTPLHLAARNGH----LEVVKLLLEAGADVNAK-------------DKNGRTPLHLAA 43
Query: 95 ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
G +VVK LL + D T LH+AA GHL
Sbjct: 44 RNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHL 81
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAY 94
+ T LHLA+R H LE++KL E A N K ++N + L++A
Sbjct: 1 NGRTPLHLAARNGH----LEVVKLLLEAGADVNAK-------------DKNGRTPLHLAA 43
Query: 95 ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
G +VVK LL + D T LH+AA GHL
Sbjct: 44 RNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHL 81
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAY 94
+ T LHLA+R H LE++KL E A N K ++N + L++A
Sbjct: 34 NGRTPLHLAARNGH----LEVVKLLLEAGADVNAK-------------DKNGRTPLHLAA 76
Query: 95 ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
G +VVK LL + D T LH+AA GHL
Sbjct: 77 RNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHL 114
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 59 CPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDD 118
CP+ A + P V++ +++ S L+VA GR D++ LL + + + D
Sbjct: 59 CPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD 118
Query: 119 GLTTSLHVAASAGHLGTFANLV 140
LH+A GH L+
Sbjct: 119 Q-AVPLHLACQQGHFQVVKCLL 139
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGT 135
V+ N++ + L+VA ER +DV+ ++L+ + +D T+LH AA AGHL T
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQT 295
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAY 94
+T LHLA+ H E+ +LK ++ A TD W + L++A
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGADVNA-------RDTDGW----------TPLHLAA 88
Query: 95 ERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
+ G ++V+ LL Y + + GLT LH+AA GHL
Sbjct: 89 DNGHLEIVEVLLKYGADVNAQDAYGLT-PLHLAADRGHL 126
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 87 ESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
++AL +A GR DVVK LL + ++ DDG +T+L A GH
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDG-STALMCACEHGH 228
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LHLA+R H E+ +LK ++ A D + TP L++A G
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TP----------------LHLAAREG 91
Query: 98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
++V+ LL + + DG T LH+AA GHL
Sbjct: 92 HLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHL 126
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 29.6 bits (65), Expect = 0.51, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 39 ILHLASRYEHEELALEILKLCP--EMLAAPNDK-FETPTDSWVVHMMNRNKESALY---- 91
ILHL RY E + P E++ K FE +SW + + +++A+
Sbjct: 216 ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKG 275
Query: 92 -VAYERGRHDVVKQLLNYPS-VSLLEMDDGLTTSLHVAASAGHLGTFANL 139
V ++ G++ V+ ++ Y VS LEM+ GL+ A+ + L F NL
Sbjct: 276 TVYFKGGKY--VQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPS 110
+++MNR ++ L++A G D+V++LL Y +
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 88 SALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
S L+ A GR VV+ L+ + M+ G T LH+AAS GH
Sbjct: 41 SPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGH 84
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LHLA+R H E+ +LK ++ A D + TP L++A G
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TP----------------LHLAAREG 79
Query: 98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
++V+ LL + + DG T LH+AA GHL
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHL 114
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPS 110
+++MNR ++ L++A G D+V++LL Y +
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 88 SALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
S L+ A GR VV+ L+ + M+ G T LH+AAS GH
Sbjct: 36 SPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGH 79
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LHLA+R H E+ +LK ++ A D + TP L++A G
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TP----------------LHLAAREG 79
Query: 98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
++V+ LL + + DG T LH+AA GHL
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHL 114
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 35 SSNTILHLASRYEHEELA--LEILKLCPEMLAAPNDK-------FETPTDSWVVHMMNRN 85
+ +L+LA+R E E + + P M AA + + + D ++ +
Sbjct: 12 AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKG 68
Query: 86 KESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
+ESAL +A +G D+VK LL+ V + E D T L A H+
Sbjct: 69 RESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHV 115
>pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
Complex
pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
Complex
pdb|2XY8|A Chain A, Paramagnetic-Based Nmr Structure Of The Complex Between
The N-Terminal Epsilon Domain And The Theta Domain Of
The Dna Polymerase Iii
Length = 186
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 8 TILKGDVP--NFLNLVHEDEAIIKQTVPGSSNTILHLASRYE 47
++LK D+P N V + A+ ++ PG N++ L +RYE
Sbjct: 112 SLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYE 153
>pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The
Proofread Exonuclease Subunit Of E. Coli Dna Polymerase
Iii
Length = 194
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 8 TILKGDVP--NFLNLVHEDEAIIKQTVPGSSNTILHLASRYE 47
++LK D+P N V + A+ ++ PG N++ L +RYE
Sbjct: 115 SLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYE 156
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 39 ILHLASRYEHEELA--LEILKLCPEMLAAPNDK-------FETPTDSWVVHMMNRNKESA 89
+L+LA+R E E + + P M AA + + + D ++ + +ESA
Sbjct: 32 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESA 88
Query: 90 LYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
L +A +G D+VK LL+ V + E D T L A H+
Sbjct: 89 LSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHV 131
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 39 ILHLASRYEHEELA--LEILKLCPEMLAAPNDK-------FETPTDSWVVHMMNRNKESA 89
+L+LA+R E E + + P M AA + + + D ++ + +ESA
Sbjct: 14 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESA 70
Query: 90 LYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
L +A +G D+VK LL+ V + E D T L A H+
Sbjct: 71 LSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHV 113
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LH+A+R H E+A +L+ + V+ ++ ++ L+ A G
Sbjct: 49 TPLHMAARAGHTEVAKYLLQ-----------------NKAKVNAKAKDDQTPLHCAARIG 91
Query: 98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFANLV 140
++VK LL + L G T LH+AA GH+ T L+
Sbjct: 92 HTNMVKLLLENNANPNLATTAG-HTPLHIAAREGHVETVLALL 133
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LH+A + + L+I+KL +P+ + +W N + L++A ++
Sbjct: 181 TPLHVAVHHNN----LDIVKLLLPRGGSPH------SPAW-------NGYTPLHIAAKQN 223
Query: 98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGH 132
+ +V + LL Y + E G+ T LH+AA GH
Sbjct: 224 QVEVARSLLQYGGSANAESVQGV-TPLHLAAQEGH 257
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 74 TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG 131
D + +++ +AL+ A G ++V+ LL V + + DD + LH+AASAG
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAG 84
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
V+ +++ + L++A RG ++V+ LL Y + + MD T LH+AA GHL
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA-DVNAMDYQGYTPLHLAAEDGHL 126
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 74 TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG 131
D + +++ +AL+ A G ++V+ LL V + + DD + LH+AASAG
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAG 84
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 74 TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG 131
D + +++ +AL+ A G ++V+ LL V + + DD + LH+AASAG
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAG 85
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 74 TDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAG 131
D + +++ +AL+ A G ++V+ LL V + + DD + LH+AASAG
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAG 84
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 76 SWVVHMMNRNKESALYVAYERGRH-DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
W+V ++N N E+ YVA R D V +LN+ + +++ + L SL + GHL
Sbjct: 1883 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE-LQKSLSLEEVEGHL 1940
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 76 SWVVHMMNRNKESALYVAYERGRH-DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
W+V ++N N E+ YVA R D V +LN+ + +++ + L SL + GHL
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE-LQKSLSLEEVEGHL 1895
>pdb|4GEF|A Chain A, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|B Chain B, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|C Chain C, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|D Chain D, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|E Chain E, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|F Chain F, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|G Chain G, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|H Chain H, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|I Chain I, Product Complex Of Lumazine Synthase From Candida
Glabrata
pdb|4GEF|J Chain J, Product Complex Of Lumazine Synthase From Candida
Glabrata
Length = 179
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 5 LFETILKGDVPNFLNLVHEDEAIIKQTVPGS 35
+ + ++KG + L+L ++E II +TVPGS
Sbjct: 42 IIDALVKGAIDRMLSLGVKEENIIVETVPGS 72
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
V+ M+ + L++A +RG ++V+ LL + + + D T LH+AA+ GHL
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVNASDSWGRTPLHLAATVGHL 93
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 90 LYVAYERGRHDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHL 133
L A G+ D V+ L+ N V+ MDD T LH+AA GHL
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN--AMDDAGVTPLHLAAKRGHL 60
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 35 SSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETP 73
NT LHLA+ Y+H E+ +LK ++ A ND TP
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STP 83
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 20/97 (20%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LHLA+ H E+ +LK ++ AA F TP L++A G
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF-TP----------------LHLAAMTG 91
Query: 98 RHDVVKQLLNYPS-VSLLEMDDGLTTSLHVAASAGHL 133
++V+ LL Y + V+ +M +T LH+AA GHL
Sbjct: 92 HLEIVEVLLKYGADVNAFDMTG--STPLHLAADEGHL 126
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LHLA+ + H E+ +LK ++ DS V + L++A +RG
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADV---------NADDSLGV--------TPLHLAADRG 91
Query: 98 RHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
+VV+ LL + +G T LH+AA+ GHL
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFT-PLHLAANIGHL 126
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 100 DVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHLGTFAN 138
D++ + P V L+ +DGLT++ + A LG N
Sbjct: 235 DIIDVFEDTPRVILISAEDGLTSTAEIMEYAKELGRSRN 273
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 1 MDERLFETILKGDVPNFLNLVHEDEAIIKQTVPGSSNTILHLASRYEHEELALEILKLCP 60
+ +RL E G+ +L+ + G T LH A++ H+E+ ++
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHKEIVKLLISKGA 61
Query: 61 EMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGL 120
++ A +D TP L+ A + G ++VK L++ + + DG
Sbjct: 62 DVNAKDSD-GRTP----------------LHYAAKEGHKEIVKLLISKGADVNAKDSDG- 103
Query: 121 TTSLHVAASAGH 132
T LH AA GH
Sbjct: 104 RTPLHYAAKEGH 115
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 27 IIKQTVPGSSNTILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDS--WVVHMMNR 84
+++ TV ++N L + + EH E +L++ P ++P + TD W+ +
Sbjct: 86 VLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKL 145
Query: 85 NKESALYVAYERG 97
AL AY G
Sbjct: 146 PVGQALPKAYGTG 158
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 90 LYVAYERGRHDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHL 133
L A G+ D V+ L+ N V+ MDD T LH+AA GHL
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN--AMDDAGVTPLHLAAKRGHL 60
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
V+ M+ + L++A +RG ++V+ LL + + + D T LH+AA+ GHL
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVNARDIWGRTPLHLAATVGHL 93
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 90 LYVAYERGRHDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHL 133
L A G+ D V+ L+ N V+ MDD T LH+AA GHL
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN--AMDDAGVTPLHLAAKRGHL 60
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 79 VHMMNRNKESALYVAYERGRHDVVKQLLNYPSVSLLEMDDGLTTSLHVAASAGHL 133
V+ M+ + L++A +RG ++V+ LL + + + D T LH+AA+ GHL
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVNASDIWGRTPLHLAATVGHL 93
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 38 TILHLASRYEHEELALEILKLCPEMLAAPNDKFETPTDSWVVHMMNRNKESALYVAYERG 97
T LHLA+ + H LEI+++ + A N K DS V + L++A RG
Sbjct: 49 TPLHLAAHFGH----LEIVEVLLKNGADVNAK-----DSLGV--------TPLHLAARRG 91
Query: 98 RHDVVKQLL-NYPSVSLLEMDDGLTTSLHVAASAGHL 133
++V+ LL N V+ D T LH+AA GHL
Sbjct: 92 HLEIVEVLLKNGADVN--ASDSHGFTPLHLAAKRGHL 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,157,212
Number of Sequences: 62578
Number of extensions: 155490
Number of successful extensions: 534
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 95
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)