BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038924
(920 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3W1S|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg12-Atg5
Conjugate Bound To The N-Terminal Domain Of Atg16
Length = 284
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 239 NSVAGDSGLSGHHFNSKTMTKDGVHGLTLHHRTANGRPPVTFAVAAEETAD----VHVSE 294
+ +AG S F ++ KD + L +H + PP +A+ +T H +
Sbjct: 92 DCLAGKSATFTTSFENQV--KDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWK 149
Query: 295 CPCFLLSGNSKGIT------AKDMWNEIKKHGSFDHLD-NDKTSPSEP 335
CF+L+G+SK I A+ W + D ++ ++K S S P
Sbjct: 150 QVCFILNGSSKAIMSLSVNEARKFWGSVITRNFQDFIEISNKISSSRP 197
>pdb|2DYM|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYM|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYM|E Chain E, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYM|G Chain G, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-46) Complex
pdb|2DYO|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
Atg16(1-57) Complex
Length = 297
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 239 NSVAGDSGLSGHHFNSKTMTKDGVHGLTLHHRTANGRPPVTFAVAAEETAD----VHVSE 294
+ +AG S F ++ KD + L +H + PP +A+ +T H +
Sbjct: 95 DCLAGKSATFTTSFENQV--KDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWK 152
Query: 295 CPCFLLSGNSKGIT------AKDMWNEIKKHGSFDHLD-NDKTSPSEP 335
CF+L+G+SK I A+ W + D ++ ++K S S P
Sbjct: 153 QVCFILNGSSKAIMSLSVNEARKFWGSVITRNFQDFIEISNKISSSRP 200
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 869 EISDRDSSYLEQHAAFSKVASLLKLPKEEASK------GFLKVVYDF 909
E++DR Y++QH S V LL+ PK +K G LK+++++
Sbjct: 220 EVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEY 266
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 869 EISDRDSSYLEQHAAFSKVASLLKLPKEEASK------GFLKVVYDF 909
E++DR Y++QH S V LL+ PK +K G LK+++++
Sbjct: 273 EVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEY 319
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 59 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 115
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASS-DTALGT---- 481
L N L Y ++ I D P L + E K + D +H P+S DT GT
Sbjct: 116 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRDTLCGTLDYL 174
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 175 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 234
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 235 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 265
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 61 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 117
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S AL GT
Sbjct: 118 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRAALCGTLDYL 176
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 177 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 236
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 237 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 267
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 58 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 114
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S T L GT
Sbjct: 115 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRTTLCGTLDYL 173
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 174 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 233
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 234 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 264
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 63 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 119
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S T L GT
Sbjct: 120 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRTTLCGTLDYL 178
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 179 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 238
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 239 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 269
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 75 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 131
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S T L GT
Sbjct: 132 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRTTLCGTLDYL 190
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 191 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 250
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 251 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 281
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 84 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 140
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S T L GT
Sbjct: 141 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRTTLCGTLDYL 199
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 200 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 259
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 260 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 290
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 61 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 117
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S T L GT
Sbjct: 118 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRTTLCGTLDYL 176
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 177 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 236
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 237 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 267
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 58 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 114
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S T L GT
Sbjct: 115 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRTELCGTLDYL 173
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 174 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 233
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 234 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 264
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 36/227 (15%)
Query: 367 EVKFFEKVYHRRYTKFYGTLGDSAARIAHDAILEHAKWECEIEAWQRPILEDKRFPEWYP 426
EV+ + H + YG D A R+ ILE+A Q+ D++ Y
Sbjct: 62 EVEIQSHLRHPNILRLYGYFHD-ATRVY--LILEYAPLGTVYRELQKLSKFDEQRTATYI 118
Query: 427 ITLFNELYYLNAGGTIWTDGSPPMQSLATIRERKFSLDTPSKIHTPASSDTAL-GT---- 481
L N L Y ++ I D P L + E K + D +H P+S T L GT
Sbjct: 119 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIA-DFGWSVHAPSSRRTTLCGTLDYL 177
Query: 482 --RLLENGEEN-------IGQFLY--LEGAEYVMYNTYDVHFYSSFALVMLFPKLELSIQ 530
++E + +G Y L G NTY + + FP
Sbjct: 178 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGA 237
Query: 531 RDFAAAVMMHDPGTMKIMSDGKWVARKCLGAVPHDIGLDDPWFEINS 577
RD + ++ H+P ++ + L+ PW NS
Sbjct: 238 RDLISRLLKHNPSQRPMLRE----------------VLEHPWITANS 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,427,259
Number of Sequences: 62578
Number of extensions: 1327799
Number of successful extensions: 2643
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2637
Number of HSP's gapped (non-prelim): 28
length of query: 920
length of database: 14,973,337
effective HSP length: 108
effective length of query: 812
effective length of database: 8,214,913
effective search space: 6670509356
effective search space used: 6670509356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)