Query 038925
Match_columns 115
No_of_seqs 198 out of 1462
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 3E-31 6.6E-36 194.1 10.0 87 3-90 386-472 (499)
2 PLN02169 fatty acid (omega-1)- 100.0 2.9E-30 6.2E-35 190.6 11.7 111 2-114 386-498 (500)
3 KOG0157 Cytochrome P450 CYP4/C 100.0 4.7E-30 1E-34 189.5 10.1 109 2-114 383-492 (497)
4 PF00067 p450: Cytochrome P450 100.0 4.9E-30 1.1E-34 183.8 9.3 88 2-89 353-440 (463)
5 PLN02183 ferulate 5-hydroxylas 100.0 6.1E-30 1.3E-34 189.3 10.1 111 2-112 394-506 (516)
6 PLN03234 cytochrome P450 83B1; 100.0 6.8E-30 1.5E-34 188.2 10.2 113 2-114 379-495 (499)
7 PLN03195 fatty acid omega-hydr 100.0 9.6E-30 2.1E-34 188.2 10.7 88 2-89 403-491 (516)
8 PLN02966 cytochrome P450 83A1 100.0 7.6E-30 1.7E-34 188.2 10.2 112 2-113 382-495 (502)
9 KOG0156 Cytochrome P450 CYP2 s 100.0 1E-29 2.2E-34 186.8 9.3 87 2-89 377-463 (489)
10 PLN02394 trans-cinnamate 4-mon 100.0 2.6E-29 5.6E-34 185.3 11.4 112 2-114 384-500 (503)
11 PLN02500 cytochrome P450 90B1 100.0 2.2E-29 4.8E-34 185.3 10.3 88 2-89 374-467 (490)
12 PLN02971 tryptophan N-hydroxyl 100.0 1.9E-29 4.1E-34 187.8 10.0 110 2-112 418-530 (543)
13 PTZ00404 cytochrome P450; Prov 100.0 3.3E-29 7.1E-34 183.9 11.0 84 1-89 374-457 (482)
14 PLN00168 Cytochrome P450; Prov 100.0 5.4E-29 1.2E-33 184.4 11.5 110 2-113 398-514 (519)
15 PLN02426 cytochrome P450, fami 100.0 5.3E-29 1.1E-33 184.0 11.3 112 2-113 385-497 (502)
16 PLN00110 flavonoid 3',5'-hydro 100.0 3.3E-29 7.2E-34 185.1 10.1 110 2-113 380-494 (504)
17 PLN02738 carotene beta-ring hy 100.0 7.8E-29 1.7E-33 187.2 12.1 111 2-113 480-592 (633)
18 PLN02687 flavonoid 3'-monooxyg 100.0 7.7E-29 1.7E-33 183.5 10.7 112 2-113 388-504 (517)
19 PLN02774 brassinosteroid-6-oxi 100.0 2.3E-28 5E-33 178.9 9.8 85 2-89 357-441 (463)
20 PLN02290 cytokinin trans-hydro 100.0 3.1E-28 6.7E-33 180.1 10.6 85 2-89 405-490 (516)
21 PLN02936 epsilon-ring hydroxyl 100.0 5.1E-28 1.1E-32 178.2 11.5 111 2-114 368-480 (489)
22 PLN03018 homomethionine N-hydr 100.0 6.9E-28 1.5E-32 179.2 11.9 112 2-114 405-522 (534)
23 PLN03112 cytochrome P450 famil 100.0 4.8E-28 1E-32 179.0 10.4 112 2-113 387-505 (514)
24 PLN03141 3-epi-6-deoxocathaste 100.0 4.2E-28 9.1E-33 177.0 9.8 84 2-89 345-428 (452)
25 PLN02196 abscisic acid 8'-hydr 100.0 3.9E-28 8.3E-33 177.8 9.6 83 2-89 357-439 (463)
26 PLN02655 ent-kaurene oxidase 100.0 6.1E-28 1.3E-32 176.8 10.3 87 2-89 352-438 (466)
27 PLN02302 ent-kaurenoic acid ox 99.9 1.2E-27 2.7E-32 175.5 10.2 84 2-89 381-464 (490)
28 KOG0159 Cytochrome P450 CYP11/ 99.9 1.4E-27 3.1E-32 173.5 9.0 109 2-113 407-515 (519)
29 PLN02987 Cytochrome P450, fami 99.9 7E-27 1.5E-31 171.7 10.6 87 2-89 360-446 (472)
30 KOG0684 Cytochrome P450 [Secon 99.9 2.1E-25 4.5E-30 159.8 8.4 109 2-113 368-480 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 2.3E-24 5E-29 156.2 8.3 78 2-89 310-387 (411)
32 PLN02648 allene oxide synthase 99.9 1.1E-23 2.5E-28 155.0 8.1 85 2-89 368-462 (480)
33 cd04516 TBP_eukaryotes eukaryo 74.2 2.6 5.7E-05 27.6 1.9 57 30-86 29-87 (174)
34 PF08492 SRP72: SRP72 RNA-bind 73.8 2.6 5.7E-05 22.6 1.5 8 32-39 43-50 (59)
35 PLN00062 TATA-box-binding prot 71.8 3.3 7.1E-05 27.3 1.9 55 30-84 29-85 (179)
36 COG2101 SPT15 TATA-box binding 71.2 1.4 3.1E-05 28.8 0.2 35 31-65 36-70 (185)
37 PRK00394 transcription factor; 70.6 4.2 9.1E-05 26.7 2.3 34 30-63 28-61 (179)
38 PF09201 SRX: SRX; InterPro: 69.5 5.1 0.00011 25.3 2.3 22 60-81 19-40 (148)
39 KOG3302 TATA-box binding prote 69.3 1.6 3.5E-05 29.0 0.1 36 29-64 49-84 (200)
40 cd00652 TBP_TLF TATA box bindi 69.3 5.1 0.00011 26.2 2.4 57 30-86 29-87 (174)
41 cd04518 TBP_archaea archaeal T 67.0 1.7 3.8E-05 28.4 -0.1 56 30-86 29-87 (174)
42 PF00352 TBP: Transcription fa 61.1 4.7 0.0001 23.0 1.0 39 30-68 31-70 (86)
43 PF12444 Sox_N: Sox developmen 51.6 11 0.00024 21.7 1.4 20 70-89 61-80 (84)
44 PRK14759 potassium-transportin 49.5 7.2 0.00016 17.7 0.4 6 32-37 24-29 (29)
45 PF09604 Potass_KdpF: F subuni 46.8 8.5 0.00018 16.9 0.4 6 32-37 20-25 (25)
46 KOG3506 40S ribosomal protein 40.3 12 0.00026 19.7 0.4 11 52-62 12-22 (56)
47 cd04517 TLF TBP-like factors ( 38.0 28 0.00062 22.7 2.0 56 30-86 30-87 (174)
48 TIGR02115 potass_kdpF K+-trans 32.6 10 0.00022 16.8 -0.5 7 32-38 19-25 (26)
49 PF02663 FmdE: FmdE, Molybdenu 32.1 41 0.00089 20.6 1.9 22 58-79 4-25 (131)
50 KOG3262 H/ACA small nucleolar 29.5 50 0.0011 22.1 2.0 35 5-41 107-142 (215)
51 PHA03162 hypothetical protein; 29.1 44 0.00095 21.0 1.6 24 55-78 2-25 (135)
52 PF15442 DUF4629: Domain of un 26.0 28 0.00062 22.3 0.5 11 57-67 127-137 (150)
53 PF11059 DUF2860: Protein of u 25.5 74 0.0016 22.8 2.5 33 4-36 81-113 (297)
54 PF12508 DUF3714: Protein of u 24.7 64 0.0014 21.7 2.0 13 2-14 82-94 (200)
55 PF07886 BA14K: BA14K-like pro 23.9 73 0.0016 14.6 1.5 16 47-62 16-31 (31)
56 PF14510 ABC_trans_N: ABC-tran 23.8 21 0.00044 20.2 -0.4 19 21-39 23-41 (85)
57 PF01629 DUF22: Domain of unkn 23.2 75 0.0016 19.3 1.9 23 4-26 62-84 (112)
58 cd00250 CAS_like Clavaminic ac 22.3 1.1E+02 0.0023 20.9 2.8 33 4-38 222-254 (262)
59 PF02311 AraC_binding: AraC-li 21.1 72 0.0016 18.5 1.6 20 2-21 41-60 (136)
60 PF14459 Prok-E2_C: Prokaryoti 20.1 20 0.00044 21.8 -1.0 17 48-64 104-120 (131)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3e-31 Score=194.15 Aligned_cols=87 Identities=29% Similarity=0.547 Sum_probs=80.9
Q ss_pred ceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhhc
Q 038925 3 ERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHRF 82 (115)
Q Consensus 3 g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f 82 (115)
++.||||+.|.++.+++||||++|+||++|+||||.+.+.. ...+..|+|||.|||+|+|++||++|+|++|+.||++|
T Consensus 386 ~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f 464 (499)
T KOG0158|consen 386 GFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNF 464 (499)
T ss_pred CeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhC
Confidence 78999999999999999999999999999999999976644 44667999999999999999999999999999999999
Q ss_pred eEecCCCC
Q 038925 83 TWKLPGNM 90 (115)
Q Consensus 83 ~~~~~~~~ 90 (115)
+++..+.+
T Consensus 465 ~~~~~~~t 472 (499)
T KOG0158|consen 465 SFEVCPTT 472 (499)
T ss_pred EEecCCcc
Confidence 99998853
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=2.9e-30 Score=190.64 Aligned_cols=111 Identities=14% Similarity=0.387 Sum_probs=88.4
Q ss_pred CceEeCCCCEEEEchhhhccCccCC-CCCCCCCCCCCCCCCCCCC-CCCccceeeccccccCccchHHHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALW-ENRNDFCPKIFLGKSINVK-GNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLL 79 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~f~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll 79 (115)
.||.|||||.|.++.|++||||++| +||++|+||||++++.... ..++.|+|||+|+|+|+|++||++|++++++.|+
T Consensus 386 ~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll 465 (500)
T PLN02169 386 SGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEII 465 (500)
T ss_pred CCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999 8999999999996543322 2367899999999999999999999999999999
Q ss_pred hhceEecCCCCCCCCCcceeeeeeeeCCeeEEEEe
Q 038925 80 HRFTWKLPGNMSNNLSMEEVFKLANRKNFHLKLWL 114 (115)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 114 (115)
++|++++.++ ..+.......+..+.+..++++.
T Consensus 466 ~~f~~~~~~~--~~~~~~~~~~l~~~~gl~l~l~~ 498 (500)
T PLN02169 466 KNYDFKVIEG--HKIEAIPSILLRMKHGLKVTVTK 498 (500)
T ss_pred HHCEEEEcCC--CCcccccceEEecCCCEEEEEEe
Confidence 9999999765 22332322233334455566553
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.96 E-value=4.7e-30 Score=189.46 Aligned_cols=109 Identities=32% Similarity=0.529 Sum_probs=90.9
Q ss_pred CceEeCCCCEEEEchhhhccCccCCC-CCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWE-NRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLH 80 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~-~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~ 80 (115)
.||.||||+.|.++.+++|||+.+|+ ||++|+||||+++......+++.|+|||+|+|+|+|++||++|++++++.+++
T Consensus 383 ~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~ 462 (497)
T KOG0157|consen 383 GGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLR 462 (497)
T ss_pred CCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999996 99999999999754443555789999999999999999999999999999999
Q ss_pred hceEecCCCCCCCCCcceeeeeeeeCCeeEEEEe
Q 038925 81 RFTWKLPGNMSNNLSMEEVFKLANRKNFHLKLWL 114 (115)
Q Consensus 81 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 114 (115)
+|++++..+. . ......++..+..++.+++
T Consensus 463 ~f~~~~~~~~--~--~~~~~~~~l~~~~gl~v~~ 492 (497)
T KOG0157|consen 463 RFRIEPVGGD--K--PKPVPELTLRPKNGLKVKL 492 (497)
T ss_pred heEEEecCCC--C--ceeeeEEEEEecCCeEEEE
Confidence 9999998772 1 4444455555555555443
No 4
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.96 E-value=4.9e-30 Score=183.82 Aligned_cols=88 Identities=35% Similarity=0.637 Sum_probs=77.8
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.|||||.|.++.+++|+||++|+||++|+|+||++.+.........++|||.|+|.|+|+++|++|++++++.|+++
T Consensus 353 ~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~ 432 (463)
T PF00067_consen 353 GGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRR 432 (463)
T ss_dssp TTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999999999999999999999998765333456689999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|+++++++
T Consensus 433 f~~~~~~~ 440 (463)
T PF00067_consen 433 FDFELVPG 440 (463)
T ss_dssp EEEEESTT
T ss_pred CEEEECCC
Confidence 99999766
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.96 E-value=6.1e-30 Score=189.32 Aligned_cols=111 Identities=41% Similarity=0.831 Sum_probs=88.0
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCC-CCCCCccceeeccccccCccchHHHHHHHHHHHHHHh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSIN-VKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLH 80 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~ 80 (115)
.||.|||||.|.++.|++||||++|+||++|+||||++++.. .....+.++|||+|+|+|+|+++|++|+++++|.|++
T Consensus 394 ~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~ 473 (516)
T PLN02183 394 AGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLH 473 (516)
T ss_pred CCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999964432 1224558999999999999999999999999999999
Q ss_pred hceEecCCCC-CCCCCcceeeeeeeeCCeeEEE
Q 038925 81 RFTWKLPGNM-SNNLSMEEVFKLANRKNFHLKL 112 (115)
Q Consensus 81 ~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 112 (115)
+|++++.++. .+.++....++.+.+...++++
T Consensus 474 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (516)
T PLN02183 474 CFTWELPDGMKPSELDMNDVFGLTAPRATRLVA 506 (516)
T ss_pred eeEEEcCCCCCCCCCChhhccccccccCCCcEE
Confidence 9999987763 1224433444544433334443
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.96 E-value=6.8e-30 Score=188.18 Aligned_cols=113 Identities=39% Similarity=0.752 Sum_probs=93.9
Q ss_pred CceEeCCCCEEEEchhhhccCccCC-CCCCCCCCCCCCCCCCC--CCCCCccceeeccccccCccchHHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALW-ENRNDFCPKIFLGKSIN--VKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANL 78 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~f~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~l 78 (115)
.||.|||||.|.++.+.+||||++| +||++|+||||+++... ....+..++|||+|+|.|+|+++|++|+++++|.|
T Consensus 379 ~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~l 458 (499)
T PLN03234 379 GGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANL 458 (499)
T ss_pred CCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 4899999999999999999999999 89999999999965332 12345689999999999999999999999999999
Q ss_pred HhhceEecCCCC-CCCCCcceeeeeeeeCCeeEEEEe
Q 038925 79 LHRFTWKLPGNM-SNNLSMEEVFKLANRKNFHLKLWL 114 (115)
Q Consensus 79 l~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 114 (115)
+++|++++.++. +..+.....+++...++..+.+.+
T Consensus 459 l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (499)
T PLN03234 459 LYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAP 495 (499)
T ss_pred HHheeeeCCCCCCCCCCCcccccccccccCCCeEEEe
Confidence 999999998763 344556666677775555666553
No 7
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.96 E-value=9.6e-30 Score=188.15 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=78.4
Q ss_pred CceEeCCCCEEEEchhhhccCccCC-CCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALW-ENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLH 80 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~ 80 (115)
.||.|||||.|.++.|++||||++| +||++|+||||++++......+..++|||+|+|+|+|++||++|++++++.|++
T Consensus 403 ~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~ 482 (516)
T PLN03195 403 DGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCR 482 (516)
T ss_pred CCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999 999999999999643212234457999999999999999999999999999999
Q ss_pred hceEecCCC
Q 038925 81 RFTWKLPGN 89 (115)
Q Consensus 81 ~f~~~~~~~ 89 (115)
+|++++.++
T Consensus 483 ~f~~~~~~~ 491 (516)
T PLN03195 483 FFKFQLVPG 491 (516)
T ss_pred hceeEecCC
Confidence 999998755
No 8
>PLN02966 cytochrome P450 83A1
Probab=99.96 E-value=7.6e-30 Score=188.23 Aligned_cols=112 Identities=42% Similarity=0.793 Sum_probs=90.9
Q ss_pred CceEeCCCCEEEEchhhhccCccCC-CCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALW-ENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLH 80 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~ 80 (115)
.||.|||||.|.++.|++||||++| +||++|+||||++++......+..++|||.|+|+|+|++||++|+++++|.|++
T Consensus 382 ~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~ 461 (502)
T PLN02966 382 AGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLL 461 (502)
T ss_pred ccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999 999999999999654322234568999999999999999999999999999999
Q ss_pred hceEecCCCC-CCCCCcceeeeeeeeCCeeEEEE
Q 038925 81 RFTWKLPGNM-SNNLSMEEVFKLANRKNFHLKLW 113 (115)
Q Consensus 81 ~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 113 (115)
+|++++.++. .+.++.+...++...++..+++.
T Consensus 462 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (502)
T PLN02966 462 NFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLV 495 (502)
T ss_pred hceeeCCCCCCcccCCcccccCeeeccCCCeEEE
Confidence 9999998764 33455555556655333355443
No 9
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1e-29 Score=186.82 Aligned_cols=87 Identities=48% Similarity=0.909 Sum_probs=80.6
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.|||||.|+++.|++||||++|+||++|+||||++++ +.+.....++|||.|+|+|+|..+|++++.+++|.|+++
T Consensus 377 ~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~ 455 (489)
T KOG0156|consen 377 GGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQR 455 (489)
T ss_pred cCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHhe
Confidence 4899999999999999999999999999999999999875 223356789999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|+|+++++
T Consensus 456 F~w~~~~~ 463 (489)
T KOG0156|consen 456 FDWKLPGG 463 (489)
T ss_pred eeeecCCC
Confidence 99999876
No 10
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.96 E-value=2.6e-29 Score=185.25 Aligned_cols=112 Identities=31% Similarity=0.581 Sum_probs=89.9
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCC--CCCCCccceeeccccccCccchHHHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSIN--VKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLL 79 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll 79 (115)
.||.|||||.|.++.|++||||++|+||++|+||||++++.. .......++|||.|+|+|+|+++|++|+++++|.|+
T Consensus 384 ~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll 463 (503)
T PLN02394 384 GGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLV 463 (503)
T ss_pred CCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999965321 122356899999999999999999999999999999
Q ss_pred hhceEecCCCCCCCCCcceeee--ee-eeCCeeEEEEe
Q 038925 80 HRFTWKLPGNMSNNLSMEEVFK--LA-NRKNFHLKLWL 114 (115)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~~~~~--~~-~~~~~~v~~~~ 114 (115)
++|++++.++. +.++....++ .. .+.++.+++.+
T Consensus 464 ~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (503)
T PLN02394 464 QNFELLPPPGQ-SKIDVSEKGGQFSLHIAKHSTVVFKP 500 (503)
T ss_pred HHceeEeCCCC-CcCccccccCceeeccCCCceEEeec
Confidence 99999987663 2244443442 22 46666666543
No 11
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=2.2e-29 Score=185.27 Aligned_cols=88 Identities=22% Similarity=0.363 Sum_probs=78.7
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCC------CCCccceeeccccccCccchHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVK------GNDFEFLPFGAGRRMCPGYSHGLKVIQSSL 75 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~------~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l 75 (115)
.||.|||||.|+++.|++||||++|+||++|+||||++++.... ..+..++|||+|+|.|+|+++|++|+++++
T Consensus 374 ~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~l 453 (490)
T PLN02500 374 KGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFI 453 (490)
T ss_pred CCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999996432211 235689999999999999999999999999
Q ss_pred HHHHhhceEecCCC
Q 038925 76 ANLLHRFTWKLPGN 89 (115)
Q Consensus 76 ~~ll~~f~~~~~~~ 89 (115)
+.|+++|++++.++
T Consensus 454 a~ll~~f~~~~~~~ 467 (490)
T PLN02500 454 HHLVLNFNWELAEA 467 (490)
T ss_pred HHHHhccEEEEcCC
Confidence 99999999998766
No 12
>PLN02971 tryptophan N-hydroxylase
Probab=99.96 E-value=1.9e-29 Score=187.78 Aligned_cols=110 Identities=27% Similarity=0.509 Sum_probs=87.6
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCC--CCCCCccceeeccccccCccchHHHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSIN--VKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLL 79 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll 79 (115)
.||.|||||.|+++.|++||||++|+||++|+||||+++... ....+..++|||.|+|+|+|++||+.|+++++|.|+
T Consensus 418 ~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll 497 (543)
T PLN02971 418 AGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLL 497 (543)
T ss_pred CCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999964322 122456799999999999999999999999999999
Q ss_pred hhceEecCCCCCCCCCcceeee-eeeeCCeeEEE
Q 038925 80 HRFTWKLPGNMSNNLSMEEVFK-LANRKNFHLKL 112 (115)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 112 (115)
++|++++.++. ..++..+.++ +..++++.+.+
T Consensus 498 ~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 530 (543)
T PLN02971 498 QGFKWKLAGSE-TRVELMESSHDMFLSKPLVMVG 530 (543)
T ss_pred HhCEEEeCCCC-CCcchhhhcCcccccccceeee
Confidence 99999987652 2344444444 21344444443
No 13
>PTZ00404 cytochrome P450; Provisional
Probab=99.96 E-value=3.3e-29 Score=183.91 Aligned_cols=84 Identities=30% Similarity=0.509 Sum_probs=77.7
Q ss_pred CCceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHh
Q 038925 1 ELERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLH 80 (115)
Q Consensus 1 ~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~ 80 (115)
+.||.|||||.|.++.+++||||++|+||++|+||||++.. .+..++|||.|+|.|+|+++|++|++++++.|++
T Consensus 374 ~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~ 448 (482)
T PTZ00404 374 GGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIIL 448 (482)
T ss_pred cCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999998642 3458999999999999999999999999999999
Q ss_pred hceEecCCC
Q 038925 81 RFTWKLPGN 89 (115)
Q Consensus 81 ~f~~~~~~~ 89 (115)
+|++++.++
T Consensus 449 ~f~~~~~~~ 457 (482)
T PTZ00404 449 NFKLKSIDG 457 (482)
T ss_pred hcEEecCCC
Confidence 999998765
No 14
>PLN00168 Cytochrome P450; Provisional
Probab=99.96 E-value=5.4e-29 Score=184.39 Aligned_cols=110 Identities=26% Similarity=0.466 Sum_probs=86.5
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCC-----CCCCCccceeeccccccCccchHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSIN-----VKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLA 76 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~ 76 (115)
.||.|||||.|.++.+++||||++|+||++|+||||++.... .....+.++|||.|+|+|+|++||++|++++++
T Consensus 398 ~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la 477 (519)
T PLN00168 398 GGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVA 477 (519)
T ss_pred CCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999964211 112345799999999999999999999999999
Q ss_pred HHHhhceEecCCCCCCCCCcce--eeeeeeeCCeeEEEE
Q 038925 77 NLLHRFTWKLPGNMSNNLSMEE--VFKLANRKNFHLKLW 113 (115)
Q Consensus 77 ~ll~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~ 113 (115)
.|+++|++++.++. .++... ......+.++.++++
T Consensus 478 ~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 514 (519)
T PLN00168 478 NMVREFEWKEVPGD--EVDFAEKREFTTVMAKPLRARLV 514 (519)
T ss_pred HHHHHccceeCCCC--cCChhhhceeEEeecCCcEEEEE
Confidence 99999999997652 233322 222333445555554
No 15
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.96 E-value=5.3e-29 Score=184.04 Aligned_cols=112 Identities=20% Similarity=0.374 Sum_probs=87.5
Q ss_pred CceEeCCCCEEEEchhhhccCccCC-CCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALW-ENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLH 80 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~ 80 (115)
.|+.|||||.|.++.+++||||++| +||++|+||||++++......++.++|||+|+|.|+|+++|++|++++++.|++
T Consensus 385 ~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~ 464 (502)
T PLN02426 385 DGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVR 464 (502)
T ss_pred CCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999 999999999999743211234557899999999999999999999999999999
Q ss_pred hceEecCCCCCCCCCcceeeeeeeeCCeeEEEE
Q 038925 81 RFTWKLPGNMSNNLSMEEVFKLANRKNFHLKLW 113 (115)
Q Consensus 81 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 113 (115)
+|++++.++....+.......+..+.++.++++
T Consensus 465 ~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~ 497 (502)
T PLN02426 465 RFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVR 497 (502)
T ss_pred HceEEEecCCCCCCcccceeEEecCCCEEEEEE
Confidence 999998654212223332223333445566654
No 16
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.96 E-value=3.3e-29 Score=185.10 Aligned_cols=110 Identities=41% Similarity=0.804 Sum_probs=87.2
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCC-C--CCCccceeeccccccCccchHHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINV-K--GNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANL 78 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~-~--~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~l 78 (115)
.||.|||||.|.++.+++|+||++|+||++|+||||++.+... . .....++|||+|+|.|+|++||++|+++++|.|
T Consensus 380 ~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~l 459 (504)
T PLN00110 380 NGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTL 459 (504)
T ss_pred CCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999643211 1 123579999999999999999999999999999
Q ss_pred HhhceEecCCCCCCCCCcceeeeeeee--CCeeEEEE
Q 038925 79 LHRFTWKLPGNMSNNLSMEEVFKLANR--KNFHLKLW 113 (115)
Q Consensus 79 l~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 113 (115)
+++|++++.++. .+.....++++.. .++.++++
T Consensus 460 l~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PLN00110 460 VHSFDWKLPDGV--ELNMDEAFGLALQKAVPLSAMVT 494 (504)
T ss_pred HHhceeecCCCC--ccCcccccccccccCCCceEeec
Confidence 999999987662 2333333445443 34555544
No 17
>PLN02738 carotene beta-ring hydroxylase
Probab=99.96 E-value=7.8e-29 Score=187.17 Aligned_cols=111 Identities=21% Similarity=0.441 Sum_probs=88.5
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCC--CCCCCCccceeeccccccCccchHHHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSI--NVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLL 79 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll 79 (115)
.||.|||||.|.++.|.+||||++|+||++|+||||+.+.. .....+..++|||.|+|.|+|++||++|+++++|.|+
T Consensus 480 ~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Ll 559 (633)
T PLN02738 480 GGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLV 559 (633)
T ss_pred CCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999985321 1223456899999999999999999999999999999
Q ss_pred hhceEecCCCCCCCCCcceeeeeeeeCCeeEEEE
Q 038925 80 HRFTWKLPGNMSNNLSMEEVFKLANRKNFHLKLW 113 (115)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 113 (115)
++|++++.++. ..+.......+..+.++.++++
T Consensus 560 r~F~~el~~~~-~~~~~~~~~~~~p~~~l~v~l~ 592 (633)
T PLN02738 560 RRFDFQLAPGA-PPVKMTTGATIHTTEGLKMTVT 592 (633)
T ss_pred HhCeeEeCCCC-CCcccccceEEeeCCCcEEEEE
Confidence 99999998663 2233332333333455666664
No 18
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.96 E-value=7.7e-29 Score=183.51 Aligned_cols=112 Identities=41% Similarity=0.778 Sum_probs=88.3
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCC----CCCCCccceeeccccccCccchHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSIN----VKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLAN 77 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~----~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ 77 (115)
.||.|||||.|.++.+.+||||++|+||++|+||||++.+.. ....+..++|||+|+|.|+|++||++|+++++|.
T Consensus 388 ~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ 467 (517)
T PLN02687 388 NGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTAT 467 (517)
T ss_pred CCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999964321 1223457999999999999999999999999999
Q ss_pred HHhhceEecCCCC-CCCCCcceeeeeeeeCCeeEEEE
Q 038925 78 LLHRFTWKLPGNM-SNNLSMEEVFKLANRKNFHLKLW 113 (115)
Q Consensus 78 ll~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 113 (115)
|+++|++++.++. .+.+.....+++...+..+++++
T Consensus 468 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (517)
T PLN02687 468 LVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVH 504 (517)
T ss_pred HHHhcceecCCCCCcccCCcccccceeeecCCCeEEe
Confidence 9999999998653 22343333445554444444443
No 19
>PLN02774 brassinosteroid-6-oxidase
Probab=99.95 E-value=2.3e-28 Score=178.88 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=77.1
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.||||+.|+++.+.+||||++|+||++|+||||++++.. ....++|||+|+|.|+|+++|.+|++++++.|+++
T Consensus 357 ~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~ 433 (463)
T PLN02774 357 NGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTR 433 (463)
T ss_pred CCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999964321 12369999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|++++.++
T Consensus 434 f~~~~~~~ 441 (463)
T PLN02774 434 YRWEEVGG 441 (463)
T ss_pred ceEEECCC
Confidence 99999766
No 20
>PLN02290 cytokinin trans-hydroxylase
Probab=99.95 E-value=3.1e-28 Score=180.08 Aligned_cols=85 Identities=27% Similarity=0.553 Sum_probs=76.9
Q ss_pred CceEeCCCCEEEEchhhhccCccCC-CCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALW-ENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLH 80 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~ 80 (115)
.||.|||||.|.++.|++||||++| +||++|+||||++.+. .....++|||.|+|.|+|+++|++|++++++.|++
T Consensus 405 ~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~ 481 (516)
T PLN02290 405 GDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLIS 481 (516)
T ss_pred CCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999 8999999999995321 12347999999999999999999999999999999
Q ss_pred hceEecCCC
Q 038925 81 RFTWKLPGN 89 (115)
Q Consensus 81 ~f~~~~~~~ 89 (115)
+|++++.++
T Consensus 482 ~f~~~~~~~ 490 (516)
T PLN02290 482 KFSFTISDN 490 (516)
T ss_pred hceEeeCCC
Confidence 999998765
No 21
>PLN02936 epsilon-ring hydroxylase
Probab=99.95 E-value=5.1e-28 Score=178.20 Aligned_cols=111 Identities=22% Similarity=0.429 Sum_probs=88.4
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCC--CCCCCccceeeccccccCccchHHHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSIN--VKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLL 79 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll 79 (115)
.||.||||+.|.++.+.+||||++|+||++|+||||+..+.. ....+..++|||.|+|.|+|+++|++|++++++.|+
T Consensus 368 ~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll 447 (489)
T PLN02936 368 GGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLL 447 (489)
T ss_pred CCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999964321 122345899999999999999999999999999999
Q ss_pred hhceEecCCCCCCCCCcceeeeeeeeCCeeEEEEe
Q 038925 80 HRFTWKLPGNMSNNLSMEEVFKLANRKNFHLKLWL 114 (115)
Q Consensus 80 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 114 (115)
++|+++++++ +.+.......+..+.++.++++.
T Consensus 448 ~~f~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~ 480 (489)
T PLN02936 448 QRLDLELVPD--QDIVMTTGATIHTTNGLYMTVSR 480 (489)
T ss_pred HhCeEEecCC--CccceecceEEeeCCCeEEEEEe
Confidence 9999999865 23333222333344566666653
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=99.95 E-value=6.9e-28 Score=179.23 Aligned_cols=112 Identities=26% Similarity=0.382 Sum_probs=88.0
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCC-----CCCCccceeeccccccCccchHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINV-----KGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLA 76 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~ 76 (115)
.||.|||||.|.++.+++|+||++|+||++|+||||++.+... ...+..++|||.|+|.|+|+++|++|++++++
T Consensus 405 ~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la 484 (534)
T PLN03018 405 GGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLA 484 (534)
T ss_pred CCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999643211 12446899999999999999999999999999
Q ss_pred HHHhhceEecCCCCCCCCCcceeeeee-eeCCeeEEEEe
Q 038925 77 NLLHRFTWKLPGNMSNNLSMEEVFKLA-NRKNFHLKLWL 114 (115)
Q Consensus 77 ~ll~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~ 114 (115)
.|+++|++++.++. ..++.....+.. .+.++.++++.
T Consensus 485 ~ll~~f~~~~~~~~-~~~~~~~~~~~~~~p~~~~v~~~~ 522 (534)
T PLN03018 485 RFLQGFNWKLHQDF-GPLSLEEDDASLLMAKPLLLSVEP 522 (534)
T ss_pred HHHHhceEEeCCCC-CCCCccccccceecCCCeEEEEEe
Confidence 99999999987652 223332222322 34556666543
No 23
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.95 E-value=4.8e-28 Score=179.01 Aligned_cols=112 Identities=28% Similarity=0.604 Sum_probs=88.9
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCC---C-CCCCccceeeccccccCccchHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSIN---V-KGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLAN 77 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~---~-~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ 77 (115)
.||.|||||.|.++.+.+||||++|+||++|+||||...... . ......++|||.|+|.|+|+++|++|++++++.
T Consensus 387 ~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ 466 (514)
T PLN03112 387 NGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALAR 466 (514)
T ss_pred cCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999998653211 1 123457999999999999999999999999999
Q ss_pred HHhhceEecCCCC-CCCCCcceeeeeeeeC--CeeEEEE
Q 038925 78 LLHRFTWKLPGNM-SNNLSMEEVFKLANRK--NFHLKLW 113 (115)
Q Consensus 78 ll~~f~~~~~~~~-~~~~~~~~~~~~~~~~--~~~v~~~ 113 (115)
|+++|++++.++. .++++....+++..++ +..++++
T Consensus 467 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
T PLN03112 467 LFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVAT 505 (514)
T ss_pred HHHheeeecCCCCCcccCCCccccCcccccCCCeEEEee
Confidence 9999999987553 2345555555665543 4455444
No 24
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.95 E-value=4.2e-28 Score=177.02 Aligned_cols=84 Identities=30% Similarity=0.480 Sum_probs=77.5
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.||||+.|.++.+++|+||++|+||++|+||||++.+. .+..++|||+|+|.|+|+++|++|+++++|.|+++
T Consensus 345 ~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~ 420 (452)
T PLN03141 345 KGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTR 420 (452)
T ss_pred CCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999999999997532 34589999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|++++.++
T Consensus 421 f~~~~~~~ 428 (452)
T PLN03141 421 FRWVAEED 428 (452)
T ss_pred CeeecCCC
Confidence 99998765
No 25
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.95 E-value=3.9e-28 Score=177.78 Aligned_cols=83 Identities=24% Similarity=0.446 Sum_probs=77.0
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.|||||.|.++.+++|+||++|+||++|+||||++.. .+..++|||.|+|.|+|+++|++|++++++.|+++
T Consensus 357 ~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~ 431 (463)
T PLN02196 357 EGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTK 431 (463)
T ss_pred CCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999632 34589999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|++++.+.
T Consensus 432 f~~~~~~~ 439 (463)
T PLN02196 432 YRWSIVGT 439 (463)
T ss_pred cEEEEcCC
Confidence 99998765
No 26
>PLN02655 ent-kaurene oxidase
Probab=99.95 E-value=6.1e-28 Score=176.78 Aligned_cols=87 Identities=26% Similarity=0.584 Sum_probs=78.4
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.|||||.|+++.+++||||++|+||++|+||||++.+.. ......++|||+|+|.|+|++||..|++++++.|+++
T Consensus 352 ~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~ 430 (466)
T PLN02655 352 GGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQE 430 (466)
T ss_pred CCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999975322 1234689999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|++++.++
T Consensus 431 f~~~~~~~ 438 (466)
T PLN02655 431 FEWRLREG 438 (466)
T ss_pred eEEEeCCC
Confidence 99999766
No 27
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.95 E-value=1.2e-27 Score=175.54 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=77.3
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.||||+.|.++.+++||||++|+||++|+||||++.. ..+..++|||+|+|.|+|+++|.+|++++++.|+++
T Consensus 381 ~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~ 456 (490)
T PLN02302 381 NGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLG 456 (490)
T ss_pred CCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999643 234589999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|++++.+.
T Consensus 457 f~~~~~~~ 464 (490)
T PLN02302 457 YRLERLNP 464 (490)
T ss_pred CeeEEcCC
Confidence 99998754
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.4e-27 Score=173.51 Aligned_cols=109 Identities=24% Similarity=0.371 Sum_probs=92.4
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.|||||.|.+..+.+.+||++|++|.+|+||||++.+. ...+++.++|||.|+|+|+|+++|.+|+.++||.++++
T Consensus 407 ~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~ 485 (519)
T KOG0159|consen 407 SGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRN 485 (519)
T ss_pred ccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999998763 34578899999999999999999999999999999999
Q ss_pred ceEecCCCCCCCCCcceeeeeeeeCCeeEEEE
Q 038925 82 FTWKLPGNMSNNLSMEEVFKLANRKNFHLKLW 113 (115)
Q Consensus 82 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 113 (115)
|+++..++ .+++....+.+....+..++++
T Consensus 486 f~V~~~~~--~pv~~~~~~il~P~~~l~f~f~ 515 (519)
T KOG0159|consen 486 FKVEFLHE--EPVEYVYRFILVPNRPLRFKFR 515 (519)
T ss_pred cceeecCC--CCccceeEEEEcCCCCcceeee
Confidence 99999876 4555555544444445555443
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.94 E-value=7e-27 Score=171.72 Aligned_cols=87 Identities=25% Similarity=0.441 Sum_probs=78.5
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.||.||||+.|.++.+.+|+||++|+||++|+||||++.+.. ......++|||+|+|.|+|+++|.+|++++++.|+++
T Consensus 360 ~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~ 438 (472)
T PLN02987 360 KGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTR 438 (472)
T ss_pred CCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999999999975332 2234579999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|++++.++
T Consensus 439 f~~~~~~~ 446 (472)
T PLN02987 439 FSWVPAEQ 446 (472)
T ss_pred eEEEECCC
Confidence 99999765
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2.1e-25 Score=159.82 Aligned_cols=109 Identities=27% Similarity=0.462 Sum_probs=88.4
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCC----CCCCccceeeccccccCccchHHHHHHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINV----KGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLAN 77 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ 77 (115)
..|.||+|..|.++...+|+||++|+||+.|+|+||++++.+. ..-++.++|||+|.+.|||+.||.+|++.++..
T Consensus 368 ~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l 447 (486)
T KOG0684|consen 368 GEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISL 447 (486)
T ss_pred cceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999999999766543 223446799999999999999999999999999
Q ss_pred HHhhceEecCCCCCCCCCcceeeeeeeeCCeeEEEE
Q 038925 78 LLHRFTWKLPGNMSNNLSMEEVFKLANRKNFHLKLW 113 (115)
Q Consensus 78 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 113 (115)
+++.|++++.++....++...- ...+..+|+++
T Consensus 448 ~L~~fdleLid~~~P~~d~s~~---v~~P~g~v~ir 480 (486)
T KOG0684|consen 448 LLRHFDLELIDGPFPEVDYSRM---VMQPEGDVRIR 480 (486)
T ss_pred HHHHcceeecCCCCCCCCHHHh---hcCCCCCceEE
Confidence 9999999999873333444322 44455555543
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=2.3e-24 Score=156.17 Aligned_cols=78 Identities=29% Similarity=0.462 Sum_probs=73.7
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceeeccccccCccchHHHHHHHHHHHHHHhh
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
.|+.||||+.|++.++..||||++|++|++|+|+||. ..++|||+|+|.|+|..||++|++++++.++++
T Consensus 310 gg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r 379 (411)
T COG2124 310 GGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRR 379 (411)
T ss_pred CCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHh
Confidence 3699999999999999999999999999999999997 379999999999999999999999999999999
Q ss_pred ceEecCCC
Q 038925 82 FTWKLPGN 89 (115)
Q Consensus 82 f~~~~~~~ 89 (115)
|++....+
T Consensus 380 ~~~~~~~~ 387 (411)
T COG2124 380 FPLLLLAE 387 (411)
T ss_pred CchhhcCC
Confidence 99877665
No 32
>PLN02648 allene oxide synthase
Probab=99.90 E-value=1.1e-23 Score=155.03 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=72.9
Q ss_pred CceEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCccceee---------ccccccCccchHHHHHHH
Q 038925 2 LERVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFLGKSINVKGNDFEFLPF---------GAGRRMCPGYSHGLKVIQ 72 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~F---------g~G~r~C~G~~~a~~~~~ 72 (115)
.||.||||+.|.++.+.+||||++|+||++|+|+||++++... ...+++| |+|+|.|+|++||++|++
T Consensus 368 ~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~---~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~ 444 (480)
T PLN02648 368 AAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEK---LLKYVFWSNGRETESPTVGNKQCAGKDFVVLVAR 444 (480)
T ss_pred ceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccc---cccccccCCCcccCCCCCCCccCccHHHHHHHHH
Confidence 4899999999999999999999999999999999998643211 1233333 677899999999999999
Q ss_pred HHHHHHHhhce-EecCCC
Q 038925 73 SSLANLLHRFT-WKLPGN 89 (115)
Q Consensus 73 ~~l~~ll~~f~-~~~~~~ 89 (115)
++++.|+++|+ +++.++
T Consensus 445 ~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 445 LFVAELFLRYDSFEIEVD 462 (480)
T ss_pred HHHHHHHHHhCEEeecCC
Confidence 99999999998 998776
No 33
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=74.22 E-value=2.6 Score=27.56 Aligned_cols=57 Identities=18% Similarity=0.406 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeccccccCcc-chHHHH-HHHHHHHHHHhhceEec
Q 038925 30 NDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPG-YSHGLK-VIQSSLANLLHRFTWKL 86 (115)
Q Consensus 30 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G-~~~a~~-~~~~~l~~ll~~f~~~~ 86 (115)
-+|+|++|-.--.....+....+-|+.|+=.|.| +..... ...--++.+|+++.+..
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~~ 87 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFPA 87 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 5799999853222223345578999999999998 434322 23334456677766543
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=73.77 E-value=2.6 Score=22.57 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=6.3
Q ss_pred CCCCCCCC
Q 038925 32 FCPKIFLG 39 (115)
Q Consensus 32 f~P~R~~~ 39 (115)
-||||||.
T Consensus 43 PDPERWLP 50 (59)
T PF08492_consen 43 PDPERWLP 50 (59)
T ss_pred CCccccCc
Confidence 37899985
No 35
>PLN00062 TATA-box-binding protein; Provisional
Probab=71.78 E-value=3.3 Score=27.28 Aligned_cols=55 Identities=18% Similarity=0.423 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeccccccCccc-hHHHH-HHHHHHHHHHhhceE
Q 038925 30 NDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGY-SHGLK-VIQSSLANLLHRFTW 84 (115)
Q Consensus 30 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~a~~-~~~~~l~~ll~~f~~ 84 (115)
-+|+|++|-.--.....+....+-|+.|+=.|.|. ..... ...--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 57999998532222233455889999999999985 34333 233344566766655
No 36
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=71.20 E-value=1.4 Score=28.83 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCCCCCCccceeeccccccCccch
Q 038925 31 DFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYS 65 (115)
Q Consensus 31 ~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 65 (115)
+|+|++|-.---....++...+-|..|+-.|.|..
T Consensus 36 eYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 36 EYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred ccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 69999985322223335568999999999999976
No 37
>PRK00394 transcription factor; Reviewed
Probab=70.56 E-value=4.2 Score=26.74 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeccccccCcc
Q 038925 30 NDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPG 63 (115)
Q Consensus 30 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G 63 (115)
-+|+|+||-.--.....+....+-|+.|.=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4799999864322233355688999999999998
No 38
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=69.47 E-value=5.1 Score=25.33 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=16.3
Q ss_pred cCccchHHHHHHHHHHHHHHhh
Q 038925 60 MCPGYSHGLKVIQSSLANLLHR 81 (115)
Q Consensus 60 ~C~G~~~a~~~~~~~l~~ll~~ 81 (115)
+|.|+.||..++-.++..|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999864
No 39
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=69.33 E-value=1.6 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceeeccccccCccc
Q 038925 29 RNDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGY 64 (115)
Q Consensus 29 p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 64 (115)
-.+|+|.||-.--.....+....+-|++|.=.|.|.
T Consensus 49 N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 49 NAEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred ccccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 346999998643222333455778899999999974
No 40
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=69.26 E-value=5.1 Score=26.17 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeccccccCccc-hHHHH-HHHHHHHHHHhhceEec
Q 038925 30 NDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGY-SHGLK-VIQSSLANLLHRFTWKL 86 (115)
Q Consensus 30 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~a~~-~~~~~l~~ll~~f~~~~ 86 (115)
-+|+|+||-.--.....+....+-|+.|+=.|.|. ..... ...--++.+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARKYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 47999998542222233556889999999999983 33332 22233445566666544
No 41
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=67.04 E-value=1.7 Score=28.41 Aligned_cols=56 Identities=18% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeccccccCccch-H--HHHHHHHHHHHHHhhceEec
Q 038925 30 NDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYS-H--GLKVIQSSLANLLHRFTWKL 86 (115)
Q Consensus 30 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~-~--a~~~~~~~l~~ll~~f~~~~ 86 (115)
-+|+|+||-.--.....+....+-|+.|.=.|.|.. . |...+ --++.+|++..+..
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGaks~~~a~~a~-~~~~~~L~~~g~~~ 87 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAKSVEDLHRAV-KEIIKKLKDYGIKV 87 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccCCHHHHHHHH-HHHHHHHHhcCCCc
Confidence 479999986432223335568899999999999863 2 22222 22344456555433
No 42
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=61.09 E-value=4.7 Score=22.99 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeccccccCccc-hHHH
Q 038925 30 NDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGY-SHGL 68 (115)
Q Consensus 30 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~a~ 68 (115)
-+|+|+||-.--.....+....+-|..|.=.|.|. ....
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGaks~~~ 70 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGAKSEEE 70 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEESSHHH
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEecCCHHH
Confidence 36888887431111223455789999999999996 4433
No 43
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=51.59 E-value=11 Score=21.73 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhceEecCCC
Q 038925 70 VIQSSLANLLHRFTWKLPGN 89 (115)
Q Consensus 70 ~~~~~l~~ll~~f~~~~~~~ 89 (115)
.++-++..+|+-|||.+++.
T Consensus 61 ~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 61 CIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHhccCCceeeec
Confidence 46788999999999999865
No 44
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=49.48 E-value=7.2 Score=17.72 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=4.0
Q ss_pred CCCCCC
Q 038925 32 FCPKIF 37 (115)
Q Consensus 32 f~P~R~ 37 (115)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 567776
No 45
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=46.79 E-value=8.5 Score=16.87 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=3.5
Q ss_pred CCCCCC
Q 038925 32 FCPKIF 37 (115)
Q Consensus 32 f~P~R~ 37 (115)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 456665
No 46
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=40.33 E-value=12 Score=19.69 Aligned_cols=11 Identities=45% Similarity=0.936 Sum_probs=8.8
Q ss_pred eeeccccccCc
Q 038925 52 LPFGAGRRMCP 62 (115)
Q Consensus 52 ~~Fg~G~r~C~ 62 (115)
-+||-|.|.|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 36899999875
No 47
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=37.99 E-value=28 Score=22.73 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeccccccCccch-HHHH-HHHHHHHHHHhhceEec
Q 038925 30 NDFCPKIFLGKSINVKGNDFEFLPFGAGRRMCPGYS-HGLK-VIQSSLANLLHRFTWKL 86 (115)
Q Consensus 30 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~-~a~~-~~~~~l~~ll~~f~~~~ 86 (115)
-+|+| ||-.--.....+....+-|+.|+=.|.|.. .... ...--++.++++..+..
T Consensus 30 ~eYeP-~fpgli~R~~~Pk~t~lIF~sGKiviTGaks~~~~~~a~~~~~~~l~~~g~~~ 87 (174)
T cd04517 30 VEYNP-RYPKVTMRLREPRATASVWSSGKITITGATSEEEAKQAARRAARLLQKLGFKV 87 (174)
T ss_pred CEEeC-CCCEEEEEecCCcEEEEEECCCeEEEEccCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 57899 885322222234557899999999999873 3332 22334455566655433
No 48
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=32.58 E-value=10 Score=16.77 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=4.4
Q ss_pred CCCCCCC
Q 038925 32 FCPKIFL 38 (115)
Q Consensus 32 f~P~R~~ 38 (115)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677764
No 49
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=32.05 E-value=41 Score=20.60 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=16.8
Q ss_pred cccCccchHHHHHHHHHHHHHH
Q 038925 58 RRMCPGYSHGLKVIQSSLANLL 79 (115)
Q Consensus 58 ~r~C~G~~~a~~~~~~~l~~ll 79 (115)
.|.|+|..++......++..|-
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHT
T ss_pred CCcCccHHHHHHHHHHHHHHcC
Confidence 4789999999999988888763
No 50
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=29.49 E-value=50 Score=22.09 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=21.5
Q ss_pred EeCCCCEEEEchhhhccCccCCCCCCCCCC-CCCCCCC
Q 038925 5 VIGKDAQVLVNTWSIERDPALWENRNDFCP-KIFLGKS 41 (115)
Q Consensus 5 ~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P-~R~~~~~ 41 (115)
.|....-|..+++.. ..++|-+|+++.| +|||...
T Consensus 107 sIK~~dgv~assfk~--g~k~fi~p~KllPl~RFLP~p 142 (215)
T KOG3262|consen 107 SIKPSDGVQASSFKP--GDKLFIDPDKLLPLDRFLPQP 142 (215)
T ss_pred EEecCCCceeecccC--CCeEEecccccCcHhhcCCCC
Confidence 344444344444332 3567899999998 7999654
No 51
>PHA03162 hypothetical protein; Provisional
Probab=29.11 E-value=44 Score=20.95 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=18.6
Q ss_pred ccccccCccchHHHHHHHHHHHHH
Q 038925 55 GAGRRMCPGYSHGLKVIQSSLANL 78 (115)
Q Consensus 55 g~G~r~C~G~~~a~~~~~~~l~~l 78 (115)
++|.+.||++...+-++-.-|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468899999998887776666655
No 52
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=26.05 E-value=28 Score=22.27 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=8.9
Q ss_pred ccccCccchHH
Q 038925 57 GRRMCPGYSHG 67 (115)
Q Consensus 57 G~r~C~G~~~a 67 (115)
-+|.|+|+++=
T Consensus 127 kPRs~LgMHML 137 (150)
T PF15442_consen 127 KPRSCLGMHML 137 (150)
T ss_pred CcccccchHHH
Confidence 48999999853
No 53
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.46 E-value=74 Score=22.80 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=26.3
Q ss_pred eEeCCCCEEEEchhhhccCccCCCCCCCCCCCC
Q 038925 4 RVIGKDAQVLVNTWSIERDPALWENRNDFCPKI 36 (115)
Q Consensus 4 ~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R 36 (115)
+.+..|+.|.++...--...++|.||..=.-+|
T Consensus 81 ~~l~~~~~~~~s~lpti~~~e~W~DPY~~~~~R 113 (297)
T PF11059_consen 81 QQLGSGTVVDFSYLPTIMSGEVWEDPYLTGQAR 113 (297)
T ss_pred eeccCCcEEEEEEeccCCCCccccCccccCCcc
Confidence 478899999888777667799999997666556
No 54
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=24.70 E-value=64 Score=21.70 Aligned_cols=13 Identities=15% Similarity=-0.067 Sum_probs=10.0
Q ss_pred CceEeCCCCEEEE
Q 038925 2 LERVIGKDAQVLV 14 (115)
Q Consensus 2 ~g~~ip~gt~v~~ 14 (115)
.|..|||||.+.-
T Consensus 82 ~g~~IPkgt~l~G 94 (200)
T PF12508_consen 82 GGILIPKGTYLYG 94 (200)
T ss_pred CCEEeCCCCEEEE
Confidence 4789999987644
No 55
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=23.94 E-value=73 Score=14.63 Aligned_cols=16 Identities=31% Similarity=0.804 Sum_probs=11.9
Q ss_pred CCccceeeccccccCc
Q 038925 47 NDFEFLPFGAGRRMCP 62 (115)
Q Consensus 47 ~~~~~~~Fg~G~r~C~ 62 (115)
....++++++-.|.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 3447999997777884
No 56
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=23.79 E-value=21 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.0
Q ss_pred cCccCCCCCCCCCCCCCCC
Q 038925 21 RDPALWENRNDFCPKIFLG 39 (115)
Q Consensus 21 ~~~~~~~~p~~f~P~R~~~ 39 (115)
.|+..-|+.++|+.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 4566667888899999984
No 57
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=23.19 E-value=75 Score=19.33 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=18.4
Q ss_pred eEeCCCCEEEEchhhhccCccCC
Q 038925 4 RVIGKDAQVLVNTWSIERDPALW 26 (115)
Q Consensus 4 ~~ip~gt~v~~~~~~~~~~~~~~ 26 (115)
..||++|.+....+..|..-.+-
T Consensus 62 I~iP~~tIv~p~~~~rha~G~vi 84 (112)
T PF01629_consen 62 IEIPPNTIVMPCAYMRHALGSVI 84 (112)
T ss_pred EecCCCCEEEEchHhhccCccEE
Confidence 47899999999999888765543
No 58
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=22.29 E-value=1.1e+02 Score=20.92 Aligned_cols=33 Identities=6% Similarity=0.096 Sum_probs=23.7
Q ss_pred eEeCCCCEEEEchhhhccCccCCCCCCCCCCCCCC
Q 038925 4 RVIGKDAQVLVNTWSIERDPALWENRNDFCPKIFL 38 (115)
Q Consensus 4 ~~ip~gt~v~~~~~~~~~~~~~~~~p~~f~P~R~~ 38 (115)
+...+|+.|+++.+.+.|.-.-|.+.. ...||+
T Consensus 222 ~~l~~Gdivi~DN~r~lHgR~~f~~~~--~~~R~L 254 (262)
T cd00250 222 VKLEPGDLLIFDNRRVLHGRTAFSPRY--GGDRWL 254 (262)
T ss_pred EEcCCCCEEEEechhhhcCCCCCCCCC--CCceEE
Confidence 467899999999988877766664432 345776
No 59
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=21.14 E-value=72 Score=18.51 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=13.3
Q ss_pred CceEeCCCCEEEEchhhhcc
Q 038925 2 LERVIGKDAQVLVNTWSIER 21 (115)
Q Consensus 2 ~g~~ip~gt~v~~~~~~~~~ 21 (115)
..|.+.+|+.+.++....|+
T Consensus 41 ~~~~l~~g~~~li~p~~~H~ 60 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHS 60 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EE
T ss_pred EEEEEECCEEEEecCCccEE
Confidence 45789999999999988875
No 60
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=20.12 E-value=20 Score=21.75 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.0
Q ss_pred CccceeeccccccCccc
Q 038925 48 DFEFLPFGAGRRMCPGY 64 (115)
Q Consensus 48 ~~~~~~Fg~G~r~C~G~ 64 (115)
....+|||.|.-.|+|.
T Consensus 104 gss~~p~GaGaAaC~aA 120 (131)
T PF14459_consen 104 GSSNNPFGAGAAACFAA 120 (131)
T ss_pred CcccCCcCccHHHHHHH
Confidence 34779999999999874
Done!