BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038926
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35881|TRA5_LACLA Transposase for insertion sequence element IS905 OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=tra905 PE=3 SV=1
Length = 391
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 8 SVIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCK 47
S++VTD L ++I + +P A C HISRN+ + K
Sbjct: 223 SLVVTDGFKGLEQIISQAYPLAKQQRCLIHISRNLASKVK 262
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 10 IVTDRELALMKVIQKIFPSATTFLCRWHI 38
I TD + + I +FP A C+WHI
Sbjct: 362 ITTDHDAVIRAAIMHVFPGARHRFCKWHI 390
>sp|O83479|Y466_TREPA Uncharacterized protein TP_0466 OS=Treponema pallidum (strain
Nichols) GN=TP_0466 PE=4 SV=1
Length = 389
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 5 MLASVIVTDRELALMKVIQKIFP---SATTFLCRWHISRNVLANCKNLFETNEIWQTFIS 61
+L +++ + L K +QK+FP A LC I R ++A K+ E+ FI
Sbjct: 231 VLVELLINEENTNLKKEVQKLFPDLEDAQEALCDEGIRRRIVAELKHNAES-----LFI- 284
Query: 62 SWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHF 119
SW L S S ++LK + YP +RN D K V+A T++++ +
Sbjct: 285 SWKLQGRSVSTAGTRRKLKITVYGRNDYP---QEMRNCLQDA---KVVNADTDTLVDY 336
>sp|Q7NB09|RNY_MYCGA Ribonuclease Y OS=Mycoplasma gallisepticum (strain R(low / passage
15 / clone 2)) GN=rny PE=3 SV=2
Length = 593
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 71 SEEEFAQRL----KGMETD--FSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVES 124
+E E++Q K +E+D SKYPI +TY++N+ S TN++ H +
Sbjct: 517 TESEYSQLTLDLKKDIESDKELSKYPITITYVQNITR--------SETTNAIAHAKKTVE 568
Query: 125 SHSKLKKQL 133
+S+ K +L
Sbjct: 569 IYSEDKAEL 577
>sp|B0U1E8|MIAA_XYLFM tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain M12)
GN=miaA PE=3 SV=1
Length = 317
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 90 PIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSW 144
P+ L +R V +C E +T +++ R+V ++ K+QL RG ++ W
Sbjct: 243 PLDLPAMRAVGYRQCWEHLDGMYTAEMLYQRSVAATRQLAKRQLTWLRGELDALW 297
>sp|Q87F70|MIAA_XYLFT tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=miaA PE=3 SV=1
Length = 317
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 90 PIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSW 144
P+ L +R V +C E +T +++ R+V ++ K+QL RG ++ W
Sbjct: 243 PLDLPAMRAVGYRQCWEHLDGMYTAEMLYQRSVAATRQLAKRQLTWLRGELDALW 297
>sp|B2I692|MIAA_XYLF2 tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain M23)
GN=miaA PE=3 SV=1
Length = 317
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 90 PIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSW 144
P+ L +R V +C E +T +++ R+V ++ K+QL RG ++ W
Sbjct: 243 PLDLPAMRAVGYRQCWEHLDGMYTAEMLYQRSVAATRQLAKRQLTWLRGELDALW 297
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2
PE=2 SV=1
Length = 807
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 9 VIVTDRELALMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSW-NLLV 67
V++TD++ L ++ ++FP C W + + + N F + + F+ S+ N +
Sbjct: 281 VMITDQDKLLSDIVVEVFPDVRHIFCLWSVLSKI-SEMLNPFVSQD--DGFMESFGNCVA 337
Query: 68 LSASEEEFAQRLKGMETDF 86
S ++E F +R M F
Sbjct: 338 SSWTDEHFERRWSNMIGKF 356
>sp|Q9PH56|MIAA_XYLFA tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain 9a5c)
GN=miaA PE=3 SV=1
Length = 317
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 90 PIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLRTSRGTFESSW 144
P+ L +R V +C E + +T ++ R V ++ K+QL RG ++ W
Sbjct: 243 PLNLPAMRAVGYRQCWEHLDNMYTAETLYQRGVAATRQLAKRQLTWLRGELDALW 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.130 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,111,250
Number of Sequences: 539616
Number of extensions: 1678230
Number of successful extensions: 3812
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3804
Number of HSP's gapped (non-prelim): 18
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)