Query 038926
Match_columns 153
No_of_seqs 123 out of 649
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsr_A Transcription-repair co 76.9 4.9 0.00017 28.2 5.2 39 60-98 31-69 (173)
2 2kzs_A Death-associated protei 51.0 26 0.0009 21.8 4.2 68 72-151 14-84 (94)
3 4g3o_A E3 ubiquitin-protein li 39.0 29 0.00098 19.8 2.8 28 14-41 16-43 (58)
4 2fcj_A Small toprim domain pro 38.1 21 0.0007 23.5 2.4 28 6-33 51-81 (119)
5 1x93_A Hypothetical protein HP 36.5 11 0.00037 20.8 0.7 14 122-135 24-37 (55)
6 2hg7_A Phage-like element PBSX 33.0 34 0.0011 21.7 2.6 41 67-110 38-79 (110)
7 4doh_A Interleukin-20; IL10 fa 32.2 1E+02 0.0035 20.9 5.3 20 12-31 54-77 (153)
8 2qee_A BH0493 protein; amidohy 31.5 20 0.00068 29.0 1.7 37 2-38 294-330 (437)
9 2k1o_A Putative; repressor, tr 28.5 19 0.00064 20.6 0.8 13 122-134 38-50 (66)
10 2ejs_A Autocrine motility fact 27.7 56 0.0019 18.6 2.8 27 13-39 11-37 (58)
11 3ut4_A CTHE_2751, putative unc 24.5 1.2E+02 0.0043 20.2 4.5 58 18-81 62-119 (134)
12 3grc_A Sensor protein, kinase; 24.4 45 0.0016 20.8 2.3 28 1-28 1-28 (140)
13 2ekf_A Ancient ubiquitous prot 24.2 64 0.0022 18.5 2.6 27 13-39 11-37 (61)
14 3kyj_B CHEY6 protein, putative 21.8 50 0.0017 20.8 2.1 26 3-28 10-35 (145)
No 1
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=76.85 E-value=4.9 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhccCchHHHHHHHH
Q 038926 60 ISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRN 98 (153)
Q Consensus 60 ~~~~~~l~~~~t~~~f~~~~~~~~~~~~~~~~~~~Y~~~ 98 (153)
+..++++..+.|+++.+.--+++.++|+..|.-+..|-.
T Consensus 31 L~lYkria~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll~ 69 (173)
T 2qsr_A 31 IEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLE 69 (173)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCCcHHHHHHHH
Confidence 577889999999999999999999999988877777654
No 2
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=51.00 E-value=26 Score=21.83 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHhhchhhhHHHHHHHhccCCCcchhhhhHHHHHhhhh---cCCCcHHHHHHHHH
Q 038926 72 EEEFAQRLKGMETDFSKYPIVLTYIRNVWLDKCKEKFVSAWTNSVMHFRNVESSHSKLKKQLR---TSRGTFESSWTKIH 148 (153)
Q Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~Y~~~~W~~p~~e~w~~~~~~~~~~~~n~Es~~~~lK~~l~---~~~~~l~~~~~~~~ 148 (153)
+.-|++-.+.-.....++|+++.|+.+..-. ..+.|-.+-++++.|.+.|. .+.+-+.-.|..|-
T Consensus 14 ekLfeEFv~~C~~~t~d~PeV~~fL~~r~~k------------as~~fL~SveF~n~L~rcL~Raq~~~sK~yVYINELC 81 (94)
T 2kzs_A 14 EKLFEEFLELCKMQTADHPEVVPFLYNRQQR------------AHSLFLASAEFCNILSRVLSRARSRPAKLYVYINELC 81 (94)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHT------------BCHHHHTSHHHHHHHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHhcc------------CCchhhhHHHHHHHHHHHHHHHhcCCcceEEehHHHH
Confidence 3334443333333334799999999876432 22222225667777777664 23466777777766
Q ss_pred hhh
Q 038926 149 TFL 151 (153)
Q Consensus 149 ~~l 151 (153)
+.|
T Consensus 82 TvL 84 (94)
T 2kzs_A 82 TVL 84 (94)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 3
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=38.98 E-value=29 Score=19.84 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=21.6
Q ss_pred ccHHHHHHHHhhCccccchhhHHHHhhh
Q 038926 14 RELALMKVIQKIFPSATTFLCRWHISRN 41 (153)
Q Consensus 14 ~d~a~~~Ai~~vFP~~~~~lC~wHi~~n 41 (153)
+-.+|..-|.++||.....-=+|...++
T Consensus 16 ql~~Mve~V~~mFPqv~~~~I~~DL~rT 43 (58)
T 4g3o_A 16 QLNAMAHQIQEMFPQVPYHLVLQDLQLT 43 (58)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4467888999999999887777776543
No 4
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=38.13 E-value=21 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=21.6
Q ss_pred CCcEEEeeccHH---HHHHHHhhCccccchh
Q 038926 6 LASVIVTDRELA---LMKVIQKIFPSATTFL 33 (153)
Q Consensus 6 ~P~~i~TD~d~a---~~~Ai~~vFP~~~~~l 33 (153)
..-.|+||.|.+ +.+-|...||++.|.+
T Consensus 51 r~VIi~TD~D~~GekIRk~i~~~lp~~~haf 81 (119)
T 2fcj_A 51 YDVYLLADADEAGEKLRRQFRRMFPEAEHLY 81 (119)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCTTSEEEC
T ss_pred CCEEEEECCCccHHHHHHHHHHHCCCCcEEe
Confidence 345689999987 6777889999998733
No 5
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=36.48 E-value=11 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=12.3
Q ss_pred hhhhHHHHHhhhhc
Q 038926 122 VESSHSKLKKQLRT 135 (153)
Q Consensus 122 ~Es~~~~lK~~l~~ 135 (153)
.||.++.+||++..
T Consensus 24 ~eSV~sfIKR~IlK 37 (55)
T 1x93_A 24 EESVGSYIKRYILK 37 (55)
T ss_dssp TSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999863
No 6
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=33.00 E-value=34 Score=21.69 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=17.8
Q ss_pred hhcCCHHHHHHHHHHHHHhcc-CchHHHHHHHHhhchhhhHHHHH
Q 038926 67 VLSASEEEFAQRLKGMETDFS-KYPIVLTYIRNVWLDKCKEKFVS 110 (153)
Q Consensus 67 ~~~~t~~~f~~~~~~~~~~~~-~~~~~~~Y~~~~W~~p~~e~w~~ 110 (153)
+--||+++.+..|+++++.-+ +-|.-++|+... + .+|+.++
T Consensus 38 AP~PT~~eL~~wwee~q~np~yepP~q~~~laqe-l--s~eklar 79 (110)
T 2hg7_A 38 APLPTQAELETWWEELQKNPPYEPPDQVELLAQE-L--SQEKLAR 79 (110)
T ss_dssp SCCCCHHHHHHHHHHHHHSCCCC----------------------
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH-H--HHHHHHH
Confidence 345799999999999998765 446678888766 2 3555553
No 7
>4doh_A Interleukin-20; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Probab=32.24 E-value=1e+02 Score=20.92 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=14.9
Q ss_pred eeccHHHHHHHH----hhCccccc
Q 038926 12 TDRELALMKVIQ----KIFPSATT 31 (153)
Q Consensus 12 TD~d~a~~~Ai~----~vFP~~~~ 31 (153)
+|.+..+..-++ .|||++..
T Consensus 54 ~~~C~~~~~lL~FYL~~Vf~~~~~ 77 (153)
T 4doh_A 54 ANRCCLLRHLLRLYLDRVFKNYQT 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCC
T ss_pred CCcchHHHHHHHHHHHHhhhcccc
Confidence 467777777655 89998876
No 8
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*
Probab=31.48 E-value=20 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCCCCCcEEEeeccHHHHHHHHhhCccccchhhHHHH
Q 038926 2 EENMLASVIVTDRELALMKVIQKIFPSATTFLCRWHI 38 (153)
Q Consensus 2 ~~~~~P~~i~TD~d~a~~~Ai~~vFP~~~~~lC~wHi 38 (153)
++.+.|++|+.-.+..+..++...||+.+..-|+|..
T Consensus 294 ~~~~lpktiLn~~~n~elat~ag~Fpnvq~g~~WWF~ 330 (437)
T 2qee_A 294 PNNKFLVTMLSRENQHELVVLARKFSNLMIFGCWWFM 330 (437)
T ss_dssp TTSCEEEEESCGGGHHHHHHHHHHCTTEEEBCCCGGG
T ss_pred cccCCCeeecChhhHHHHHHHHccCCcceecCccccc
Confidence 3447899998888899999999999999999999987
No 9
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=28.53 E-value=19 Score=20.60 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=11.7
Q ss_pred hhhhHHHHHhhhh
Q 038926 122 VESSHSKLKKQLR 134 (153)
Q Consensus 122 ~Es~~~~lK~~l~ 134 (153)
.||.++.+|||+.
T Consensus 38 ~eSV~sfIKR~Il 50 (66)
T 2k1o_A 38 VESVNSFVKRHIL 50 (66)
T ss_dssp CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999885
No 10
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.68 E-value=56 Score=18.57 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred eccHHHHHHHHhhCccccchhhHHHHh
Q 038926 13 DRELALMKVIQKIFPSATTFLCRWHIS 39 (153)
Q Consensus 13 D~d~a~~~Ai~~vFP~~~~~lC~wHi~ 39 (153)
.+-.+|..-|+++||......=+|.+.
T Consensus 11 ~q~~~mv~~V~~mfP~vp~~~I~~DL~ 37 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQVPYHLVLQDLQ 37 (58)
T ss_dssp CHHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455678889999999988866666653
No 11
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=24.54 E-value=1.2e+02 Score=20.16 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=38.9
Q ss_pred HHHHHHhhCccccchhhHHHHhhhhHhhhcccccchhHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 038926 18 LMKVIQKIFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVLSASEEEFAQRLKG 81 (153)
Q Consensus 18 ~~~Ai~~vFP~~~~~lC~wHi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~f~~~~~~ 81 (153)
+.--|..|| .+.=-.+.++++..+..+... +.+..+...+..++.++|+.|-++...+
T Consensus 62 l~p~I~~vl-~s~D~~W~ywil~~lv~~~~~-----~~~~~l~~eL~rl~~~pt~~E~~eev~e 119 (134)
T 3ut4_A 62 AMPHILTIL-QGNDIMWKYWVIKLMIPYLIY-----PNKQLVKSELERLSSLEIINEDIREIVN 119 (134)
T ss_dssp HHHHHHHHH-HSSCHHHHHHHHHHHGGGCCH-----HHHHHHHHHHHHHHTCCCSSGGGHHHHH
T ss_pred hHHHHHHHH-HcCChHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 444566666 555567788887777766643 4567788888899999877765444433
No 12
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=24.43 E-value=45 Score=20.76 Aligned_cols=28 Identities=4% Similarity=0.240 Sum_probs=20.3
Q ss_pred CCCCCCCcEEEeeccHHHHHHHHhhCcc
Q 038926 1 MEENMLASVIVTDRELALMKVIQKIFPS 28 (153)
Q Consensus 1 ~~~~~~P~~i~TD~d~a~~~Ai~~vFP~ 28 (153)
|.....+++++.|.+......++..+-.
T Consensus 1 M~~~~~~~iLivdd~~~~~~~l~~~l~~ 28 (140)
T 3grc_A 1 MSLAPRPRILICEDDPDIARLLNLMLEK 28 (140)
T ss_dssp ----CCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 5566778999999999998888876643
No 13
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.20 E-value=64 Score=18.54 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=20.9
Q ss_pred eccHHHHHHHHhhCccccchhhHHHHh
Q 038926 13 DRELALMKVIQKIFPSATTFLCRWHIS 39 (153)
Q Consensus 13 D~d~a~~~Ai~~vFP~~~~~lC~wHi~ 39 (153)
.+-.+|..-|..+||......=+|.+.
T Consensus 11 ~ql~~mv~~V~~mfP~vp~~~I~~DL~ 37 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPHVPLGVIQRDLA 37 (61)
T ss_dssp CCHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455678889999999988866666664
No 14
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=21.83 E-value=50 Score=20.78 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCCCCcEEEeeccHHHHHHHHhhCcc
Q 038926 3 ENMLASVIVTDRELALMKVIQKIFPS 28 (153)
Q Consensus 3 ~~~~P~~i~TD~d~a~~~Ai~~vFP~ 28 (153)
.+..|.+++.|.+......++..+-.
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~ 35 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKT 35 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 46789999999999999988876654
Done!