Query 038926
Match_columns 153
No_of_seqs 123 out of 649
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 07:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038926.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038926hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2eyqa6 d.315.1.1 (A:990-1147) 75.2 2.9 0.00021 27.0 5.3 39 60-98 35-73 (158)
2 d2b4jc1 a.48.4.1 (C:346-426) P 34.6 23 0.0017 20.1 3.6 31 122-152 7-37 (81)
3 d1q2la2 d.185.1.1 (A:733-960) 33.0 54 0.0039 21.7 6.0 34 54-87 98-131 (228)
4 d1x9ba_ a.10.2.1 (A:) Hypothet 31.5 31 0.0023 17.5 3.7 25 61-85 7-31 (53)
5 d1xhfa1 c.23.1.1 (A:2-122) Aer 29.6 15 0.0011 21.9 2.3 24 5-28 1-24 (121)
6 d2p6va1 a.277.1.1 (A:582-678) 28.5 53 0.0039 19.2 5.9 42 57-99 36-78 (97)
7 d1yioa2 c.23.1.1 (A:3-130) Res 28.4 15 0.0011 22.1 2.1 24 6-29 2-25 (128)
8 d1ys7a2 c.23.1.1 (A:7-127) Tra 27.1 17 0.0012 21.8 2.1 21 6-26 1-21 (121)
9 d1qkka_ c.23.1.1 (A:) Transcri 24.5 18 0.0013 22.1 2.0 23 7-29 1-23 (140)
10 d2fcja1 c.136.1.1 (A:1-114) Hy 24.0 23 0.0017 21.1 2.4 26 7-32 52-80 (114)
11 d2qtva4 d.109.2.1 (A:627-768) 22.7 28 0.002 22.0 2.6 60 2-68 78-138 (142)
No 1
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=75.21 E-value=2.9 Score=26.96 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhccCchHHHHHHHH
Q 038926 60 ISSWNLLVLSASEEEFAQRLKGMETDFSKYPIVLTYIRN 98 (153)
Q Consensus 60 ~~~~~~l~~~~t~~~f~~~~~~~~~~~~~~~~~~~Y~~~ 98 (153)
+..++++..+.|.++.+.--+++.++||..|.-+..+-.
T Consensus 35 l~~Ykrla~~~~~~el~~i~~El~DRFG~lP~ev~nLl~ 73 (158)
T d2eyqa6 35 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 73 (158)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 577889999999999999999999999987866666544
No 2
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.58 E-value=23 Score=20.13 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=26.3
Q ss_pred hhhhHHHHHhhhhcCCCcHHHHHHHHHhhhc
Q 038926 122 VESSHSKLKKQLRTSRGTFESSWTKIHTFLE 152 (153)
Q Consensus 122 ~Es~~~~lK~~l~~~~~~l~~~~~~~~~~l~ 152 (153)
..-+|+.||..|.-...|...|++.++++.+
T Consensus 7 l~~L~~~ik~sL~~~~~dv~kcL~~L~~l~~ 37 (81)
T d2b4jc1 7 LQRIHAEIKNSLKIDNLDVNRCIEALDELAS 37 (81)
T ss_dssp HHHHHHHHHHHTCTTSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHc
Confidence 4568899999998889999999999988765
No 3
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]}
Probab=32.97 E-value=54 Score=21.65 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Q 038926 54 EIWQTFISSWNLLVLSASEEEFAQRLKGMETDFS 87 (153)
Q Consensus 54 ~~~~~~~~~~~~l~~~~t~~~f~~~~~~~~~~~~ 87 (153)
+....|+..+.......++++|+..-..+...+.
T Consensus 98 ~~I~~fl~~~~~~l~~~~~eef~~~K~~li~~l~ 131 (228)
T d1q2la2 98 ERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQML 131 (228)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHh
Confidence 3556777777777788899999999888887775
No 4
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=31.51 E-value=31 Score=17.50 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHh
Q 038926 61 SSWNLLVLSASEEEFAQRLKGMETD 85 (153)
Q Consensus 61 ~~~~~l~~~~t~~~f~~~~~~~~~~ 85 (153)
..|..+++++|..+|-..++++...
T Consensus 7 ~kFEs~INS~SK~~FV~NL~ELE~l 31 (53)
T d1x9ba_ 7 AKFESMINSPSKSVFVRNLNELEAL 31 (53)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHhHHHHHHH
Confidence 3467889999999999988887664
No 5
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.60 E-value=15 Score=21.94 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=20.4
Q ss_pred CCCcEEEeeccHHHHHHHHhhCcc
Q 038926 5 MLASVIVTDRELALMKVIQKIFPS 28 (153)
Q Consensus 5 ~~P~~i~TD~d~a~~~Ai~~vFP~ 28 (153)
..|++.+.|.+......+...+..
T Consensus 1 ~tp~ILiVDDd~~~~~~l~~~L~~ 24 (121)
T d1xhfa1 1 QTPHILIVEDELVTRNTLKSIFEA 24 (121)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH
Confidence 469999999999999988877654
No 6
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.53 E-value=53 Score=19.21 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcC-CHHHHHHHHHHHHHhccCchHHHHHHHHh
Q 038926 57 QTFISSWNLLVLSA-SEEEFAQRLKGMETDFSKYPIVLTYIRNV 99 (153)
Q Consensus 57 ~~~~~~~~~l~~~~-t~~~f~~~~~~~~~~~~~~~~~~~Y~~~~ 99 (153)
+........++++. ++|||-.+..+... ++..|.++.+++++
T Consensus 36 ~~Vr~LV~~L~~~~i~~EEF~~~Lq~~ln-s~pqP~lvPFLK~s 78 (97)
T d2p6va1 36 ANVKELVQNLLDGKIEAEDFTSRLYRELN-SSPQPYLVPFLKRS 78 (97)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHTT-CCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcCHHHHHHHHHHHhc-CCCCchhHHHHHHh
Confidence 34555666777766 89999988654433 23568899988876
No 7
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=28.39 E-value=15 Score=22.08 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.7
Q ss_pred CCcEEEeeccHHHHHHHHhhCccc
Q 038926 6 LASVIVTDRELALMKVIQKIFPSA 29 (153)
Q Consensus 6 ~P~~i~TD~d~a~~~Ai~~vFP~~ 29 (153)
.|++.+.|.|......+...+-..
T Consensus 2 kP~ILiVDDd~~~~~~l~~~L~~~ 25 (128)
T d1yioa2 2 KPTVFVVDDDMSVREGLRNLLRSA 25 (128)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc
Confidence 589999999999999998877554
No 8
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.05 E-value=17 Score=21.77 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.4
Q ss_pred CCcEEEeeccHHHHHHHHhhC
Q 038926 6 LASVIVTDRELALMKVIQKIF 26 (153)
Q Consensus 6 ~P~~i~TD~d~a~~~Ai~~vF 26 (153)
.|++.+.|.+......+...+
T Consensus 1 sPkILiVDD~~~~~~~l~~~L 21 (121)
T d1ys7a2 1 SPRVLVVDDDSDVLASLERGL 21 (121)
T ss_dssp CCEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHH
Confidence 489999999999888877554
No 9
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=24.50 E-value=18 Score=22.14 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.2
Q ss_pred CcEEEeeccHHHHHHHHhhCccc
Q 038926 7 ASVIVTDRELALMKVIQKIFPSA 29 (153)
Q Consensus 7 P~~i~TD~d~a~~~Ai~~vFP~~ 29 (153)
|++.+.|.|......++..+-..
T Consensus 1 P~ILiVDDd~~~~~~l~~~L~~~ 23 (140)
T d1qkka_ 1 PSVFLIDDDRDLRKAMQQTLELA 23 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHC
Confidence 89999999999999999877543
No 10
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.96 E-value=23 Score=21.08 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=19.6
Q ss_pred CcEEEeeccHHHHH---HHHhhCccccch
Q 038926 7 ASVIVTDRELALMK---VIQKIFPSATTF 32 (153)
Q Consensus 7 P~~i~TD~d~a~~~---Ai~~vFP~~~~~ 32 (153)
.-+|++|.|.+=.. .|...||++.|.
T Consensus 52 ~Iii~~D~D~aG~~~a~~l~~~l~~~~~~ 80 (114)
T d2fcja1 52 DVYLLADADEAGEKLRRQFRRMFPEAEHL 80 (114)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHCTTSEEE
T ss_pred cEEEEeCCChHHHHHHHHHHHHCCCCcEE
Confidence 46789999986444 478899998773
No 11
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.66 E-value=28 Score=22.02 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=37.8
Q ss_pred CCCCCCcEEEeeccHHHHHHHHh-hCccccchhhHHHHhhhhHhhhcccccchhHHHHHHHHHHHHhh
Q 038926 2 EENMLASVIVTDRELALMKVIQK-IFPSATTFLCRWHISRNVLANCKNLFETNEIWQTFISSWNLLVL 68 (153)
Q Consensus 2 ~~~~~P~~i~TD~d~a~~~Ai~~-vFP~~~~~lC~wHi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (153)
+.-+.|+.|+||...+...=+-+ +=|.+.|.- +-.......+.++-..+.||+.+++++=
T Consensus 78 ~RfP~Pr~i~~~qggSQARfLlsklNPs~t~~~-------~~~~g~~~v~TDDvSl~~Fm~hL~klaV 138 (142)
T d2qtva4 78 DRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQD-------MARGGSTIVLTDDVSLQNFMTHLQQVAV 138 (142)
T ss_dssp TCSSCCEEEEEETTCGGGHHHHTTSBCCSCSSC-------SCCSSSCCCCCCCCCHHHHHHHHHHHHT
T ss_pred ccCCCCeEEEecCCCcHHHHHHHhcCCCccccc-------cccCCCCceecCccCHHHHHHHHHHHhc
Confidence 34578999999999887765544 667666521 1111111234455577889999988753
Done!