BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038927
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 61 YKKWASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAFNTGSHSIHLKF- 119
Y KWASS F GD++LF Y N+ NV V + +F+SCN + P ++ +G+ SI LK
Sbjct: 21 YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN-SSSPAASYTSGADSIPLKRP 79
Query: 120 RSHYFRSDFPGHYEAGQKLEVVTTDGS 146
+ YF PGH + GQK+E+ GS
Sbjct: 80 GTFYFLCGIPGHCQLGQKVEIKVDPGS 106
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 62 KKWASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAFNTGSHSIHLKFRS 121
+ W + F GD +LF Y NV +V + F +CN K + +G I L
Sbjct: 16 ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA-KVYTSGRDQIKLPKGQ 74
Query: 122 HYFRSDFPGHYEAGQKLEV 140
YF +FPGH ++G K+ V
Sbjct: 75 SYFICNFPGHCQSGMKIAV 93
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 65 ASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAFNTGSHSIHLKFRSHYF 124
A ++F GD ++F+Y NV V R + SC+ R + +++G I L +YF
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCS-APRGARTYSSGQDRIKLTRGQNYF 72
Query: 125 RSDFPGHYEAGQKLEV 140
FPGH G K+ +
Sbjct: 73 ICSFPGHCGGGMKIAI 88
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 45 VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRP 104
+EW++P+ D +Y WA+ + F GD + F++ +V +V + F++C ++ P
Sbjct: 10 MEWKRPS-----DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNC-KKENP 63
Query: 105 IKAFNTGSHSIHLKFRS-HYFRSDFPGHYEAGQKLEV 140
I T I L Y+ H GQKL +
Sbjct: 64 ISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSI 100
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 59 DYYKKWASSRNFTTGDTILFEYTNRTDNV-KLVQRREFESCN--------RRTRP-IKAF 108
++Y +WA+ + F GD++ F + NV ++ ++ F++CN RT P I+
Sbjct: 21 NFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL 80
Query: 109 NTGSHSIHLKFRSHYFRSDFPGHYEAGQKLEV 140
+ + HYF H GQKL +
Sbjct: 81 D--------ELGMHYFVCTVGTHCSNGQKLSI 104
>pdb|1GDI|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDJ|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDK|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDL|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1LH1|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH2|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH3|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH5|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH6|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH7|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2GDM|A Chain A, Leghemoglobin (oxy)
pdb|2LH1|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH2|A Chain A, X-ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (russian)
pdb|2LH3|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH5|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH6|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH7|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
Length = 153
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 132 YEAGQKLEV---VTTDGSLPRTPTNLPHLHVDPNIVNISYPVYVERVVDRLK 180
YEA +LEV V TD +L NL +HV + + +PV E ++ +K
Sbjct: 72 YEAAIQLEVTGVVVTDATLK----NLGSVHVSKGVADAHFPVVKEAILKTIK 119
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 107 AFNTGSHSIHLKFRSHYFRSDFPGHYEAGQKLEVVTTDGSLPRTPTNLPH 156
A N H + R HYF D P Y+ Q + + T+G + NLP+
Sbjct: 67 ALNCEVHEESVFARKHYFYPDLPKGYQISQYEKPLATNGWV---ELNLPN 113
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 63 KWASSRNFTTGDTILFEYTN-RTDNVKLVQRREF-ESCNRRT--RPIKAFNTGSHSIHLK 118
+W N T F Y+N + + L++R+ F ES + + R + A +G ++ +
Sbjct: 118 RWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP 177
Query: 119 FRSHYFRSDFPGHYEAGQKLEVVTTDG 145
SH++ G YE + ++V +G
Sbjct: 178 VYSHHYYDIVRGQYEIVDQPDIVILEG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,609,981
Number of Sequences: 62578
Number of extensions: 284772
Number of successful extensions: 544
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 24
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)