Query 038927
Match_columns 198
No_of_seqs 171 out of 801
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 2.6E-41 9E-46 270.4 7.8 107 35-147 2-111 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 4E-40 1.4E-44 253.8 8.1 105 35-146 1-106 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 1.3E-39 4.5E-44 253.5 9.2 107 37-149 2-110 (116)
4 2cbp_A Cucumber basic protein; 100.0 4.8E-37 1.6E-41 231.6 7.3 95 37-143 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.9E-33 6.5E-38 210.2 8.1 91 37-143 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 6.6E-11 2.3E-15 91.8 8.1 95 35-143 15-139 (140)
7 2cal_A Rusticyanin; iron respi 99.0 6E-10 2E-14 89.1 5.8 74 68-143 63-154 (154)
8 1bxv_A Plastocyanin; copper pr 99.0 8.7E-10 3E-14 78.5 5.9 84 38-143 4-91 (91)
9 1iuz_A Plastocyanin; electron 98.7 3.2E-08 1.1E-12 72.2 5.9 89 38-143 3-98 (98)
10 2aan_A Auracyanin A; cupredoxi 98.7 1.4E-07 4.7E-12 72.9 9.7 91 37-143 19-139 (139)
11 1pmy_A Pseudoazurin; electron 98.6 5.9E-08 2E-12 75.0 7.3 69 68-145 23-95 (123)
12 2gim_A Plastocyanin; beta shee 98.6 1.5E-07 5.2E-12 68.7 8.5 87 38-143 5-105 (106)
13 1paz_A Pseudoazurin precursor; 98.6 7.1E-08 2.4E-12 74.5 6.9 69 68-145 23-95 (123)
14 1plc_A Plastocyanin; electron 98.6 1.1E-07 3.7E-12 69.0 6.6 73 68-143 19-99 (99)
15 2plt_A Plastocyanin; electron 98.5 1.4E-07 4.8E-12 68.0 5.3 89 38-143 3-98 (98)
16 1b3i_A PETE protein, protein ( 98.5 2.9E-07 9.8E-12 66.4 6.8 71 68-143 21-97 (97)
17 1byp_A Protein (plastocyanin); 98.5 3.6E-07 1.2E-11 66.1 6.7 73 68-143 19-99 (99)
18 3tu6_A Pseudoazurin (blue copp 98.5 2.6E-07 8.9E-12 72.0 6.2 69 68-145 25-97 (127)
19 3ef4_A Pseudoazurin, blue copp 98.4 4.2E-07 1.4E-11 70.8 7.0 69 68-144 24-95 (124)
20 1kdj_A Plastocyanin; electron 98.4 3.6E-07 1.2E-11 66.4 6.2 88 39-143 3-102 (102)
21 3erx_A Pseudoazurin; copper pr 98.4 6.1E-07 2.1E-11 69.5 7.8 70 68-145 23-95 (123)
22 1pcs_A Plastocyanin; electron 98.3 9E-07 3.1E-11 63.8 5.4 89 38-143 4-98 (98)
23 1cuo_A Protein (azurin ISO-2); 97.7 0.00029 9.8E-09 54.7 10.1 90 38-143 4-128 (129)
24 4hci_A Cupredoxin 1; structura 97.7 3.1E-05 1.1E-09 56.4 4.3 64 68-143 30-100 (100)
25 3cvb_A Plastocyanin; cupredoxi 97.7 0.0001 3.4E-09 53.2 6.8 88 38-143 4-104 (105)
26 3ay2_A Lipid modified azurin p 97.7 0.0001 3.5E-09 60.0 7.3 91 37-143 43-166 (167)
27 3c75_A Amicyanin; copper prote 97.7 6.9E-05 2.4E-09 57.9 5.9 68 68-143 62-132 (132)
28 1iko_P Ephrin-B2; greek KEY, g 97.6 5.1E-05 1.8E-09 62.7 4.4 77 70-146 26-142 (178)
29 2ux6_A Pseudoazurin; type-1 co 97.6 8.9E-05 3.1E-09 56.8 5.1 67 68-145 23-93 (122)
30 2iaa_C Azurin; quinoprotein, t 97.5 0.00086 2.9E-08 52.0 10.2 89 39-143 4-127 (128)
31 2ccw_A Azurin II, AZN-2; elect 97.4 0.00094 3.2E-08 51.8 8.7 90 38-143 4-128 (129)
32 1nwp_A Azurin; electron transp 97.3 0.0003 1E-08 54.6 5.7 90 38-143 4-128 (128)
33 1id2_A Amicyanin; beta barrel, 97.2 0.0014 4.6E-08 48.4 7.4 68 68-143 36-106 (106)
34 2ov0_A Amicyanin; beta-sandwic 97.1 0.00075 2.6E-08 49.5 5.6 64 68-143 35-105 (105)
35 2x11_B Ephrin-A5; receptor-sig 96.8 0.0011 3.8E-08 54.7 4.7 75 68-146 52-164 (177)
36 3d12_B Ephrin-B3; beta propell 96.8 0.0021 7.2E-08 51.2 6.0 75 69-143 23-140 (141)
37 3czu_B Ephrin-A1; ATP-binding, 96.3 0.004 1.4E-07 51.6 5.0 75 68-146 50-162 (182)
38 1shx_A Ephrin-A5; ephrin signa 96.0 0.0074 2.5E-07 47.9 4.7 75 68-146 23-135 (138)
39 1iby_A Nitrosocyanin; RED copp 95.6 0.017 5.9E-07 42.2 5.2 64 68-143 40-111 (112)
40 2vsm_B Ephrin-B2; developmenta 95.2 0.024 8.1E-07 45.0 5.1 76 69-144 24-139 (140)
41 3fsa_A Azurin; copper, cupredo 94.3 0.57 1.9E-05 36.3 10.7 71 69-143 21-125 (125)
42 2wo3_B Ephrin-A2; transferase- 94.3 0.052 1.8E-06 43.9 4.8 75 68-146 32-145 (157)
43 2cua_A Protein (CUA); CUA cent 94.2 0.17 5.7E-06 39.2 7.4 65 68-144 62-135 (135)
44 2dv6_A Nitrite reductase; elec 92.5 0.13 4.5E-06 45.8 5.0 75 67-146 56-134 (447)
45 3hei_B Ephrin-A1; EPH receptor 92.1 0.23 8E-06 39.0 5.3 74 68-143 22-131 (132)
46 1fwx_A Nitrous oxide reductase 86.8 1.2 4.1E-05 42.6 6.7 66 68-145 515-593 (595)
47 3sbq_A Nitrous-oxide reductase 81.9 2.7 9.2E-05 40.6 6.7 64 68-144 560-637 (638)
48 3s8f_B Cytochrome C oxidase su 79.2 5.1 0.00017 32.2 6.7 65 67-144 94-168 (168)
49 1mzy_A Copper-containing nitri 61.0 10 0.00035 32.3 4.9 74 68-145 66-153 (333)
50 1oe1_A Dissimilatory copper-co 59.3 12 0.0004 31.9 4.9 75 68-146 67-154 (336)
51 1yel_A AT1G16640; CESG, protei 57.3 3.7 0.00013 29.7 1.2 24 65-90 73-96 (104)
52 4i1k_A B3 domain-containing tr 56.8 4.5 0.00015 31.5 1.7 26 65-90 112-137 (146)
53 1kbv_A ANIA, major outer membr 56.8 13 0.00044 31.9 4.8 75 68-146 72-158 (327)
54 2zoo_A Probable nitrite reduct 49.5 10 0.00035 33.5 3.0 75 68-146 62-148 (442)
55 3l6w_A Hemocyanin 1; cupredoxi 45.3 15 0.00053 34.3 3.6 74 69-143 414-491 (491)
56 2bw4_A Copper-containing nitri 42.1 31 0.001 29.3 4.8 74 68-145 73-159 (340)
57 3iuw_A Activating signal coint 40.7 11 0.00039 27.1 1.5 16 68-83 36-52 (83)
58 1oe1_A Dissimilatory copper-co 39.5 21 0.00072 30.3 3.4 36 114-149 286-323 (336)
59 3gdc_A Multicopper oxidase; be 38.5 46 0.0016 27.7 5.3 77 68-146 68-156 (288)
60 1mzy_A Copper-containing nitri 38.0 25 0.00085 29.9 3.6 35 114-148 286-322 (333)
61 2z0t_A Putative uncharacterize 33.4 15 0.0005 27.6 1.2 11 68-78 32-42 (109)
62 2nms_A CMRF35-like-molecule 1; 32.0 7.7 0.00026 28.1 -0.5 29 118-147 85-114 (124)
63 2zwn_A Two-domain type laccase 28.1 66 0.0023 27.5 4.7 33 114-146 92-128 (339)
64 2l8d_A Lamin-B receptor; DNA b 26.4 69 0.0024 22.2 3.6 46 67-118 7-54 (66)
65 1zpu_A Iron transport multicop 26.3 99 0.0034 28.3 5.8 77 68-147 36-127 (534)
66 1xne_A Hypothetical protein PF 25.9 18 0.00061 27.3 0.5 12 68-79 33-44 (113)
67 2dig_A Lamin-B receptor; tudor 24.0 98 0.0034 21.5 4.0 47 67-119 10-58 (68)
68 1cyx_A CYOA; electron transpor 23.2 64 0.0022 26.7 3.5 28 114-143 84-115 (205)
69 2qcp_X Cation efflux system pr 22.5 37 0.0013 23.6 1.7 16 68-83 52-67 (80)
70 3hb3_B Cytochrome C oxidase su 22.3 69 0.0023 27.8 3.7 30 114-145 232-265 (298)
71 1sdd_A Coagulation factor V; c 21.9 12 0.00042 31.7 -1.2 78 67-145 216-301 (306)
72 2vb2_X Copper protein, cation 21.9 39 0.0013 24.0 1.7 20 64-83 56-75 (88)
73 1fft_B Ubiquinol oxidase; elec 21.4 4E+02 0.014 23.1 9.0 64 68-143 153-225 (315)
74 2gsm_B Cytochrome C oxidase su 21.0 77 0.0026 26.8 3.6 29 114-144 214-246 (262)
75 2hzs_I RNA polymerase II media 20.6 1.4 4.7E-05 25.2 -5.0 19 67-85 4-22 (27)
76 3gdc_A Multicopper oxidase; be 20.3 35 0.0012 28.5 1.3 31 114-144 257-288 (288)
77 2l55_A SILB,silver efflux prot 20.0 48 0.0016 23.3 1.8 21 63-83 41-61 (82)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=2.6e-41 Score=270.37 Aligned_cols=107 Identities=22% Similarity=0.439 Sum_probs=99.6
Q ss_pred eeeEEEecCCCCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcCCCCceEEE-cccccccccCCCCCccccCCCCe
Q 038927 35 EGVGFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNRTDNVKLV-QRREFESCNRRTRPIKAFNTGSH 113 (198)
Q Consensus 35 ~a~~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~~~HsV~~V-~~~~Y~~C~~~s~pi~~~~sG~~ 113 (198)
+|++|+|||+.||+++++ ..+| ++||++++|+|||+|+|+|.++.|+|+|| +|++|+.|+. ++++..+++|++
T Consensus 2 ~a~~~~VGg~~GW~~~~~----~~~Y-~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~-s~p~~~~~~G~~ 75 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS----PNFY-SQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNF-VNSDNDVERTSP 75 (138)
T ss_dssp CCCEEETTGGGCSSCCSS----TTHH-HHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCC-TTSCCCCCCCSC
T ss_pred CceEEEECCcCcCcCCCC----ccch-hhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCC-CCccccccCCCe
Confidence 578999999999999753 3566 99999999999999999999999999999 9999999999 999999999999
Q ss_pred EEEe-CC-ccEEEEcCCCCCCCCCCeEEEEecCCCC
Q 038927 114 SIHL-KF-RSHYFRSDFPGHYEAGQKLEVVTTDGSL 147 (198)
Q Consensus 114 ~v~L-~~-G~~YFICgv~~HC~~GmKl~I~V~~~~~ 147 (198)
.|+| ++ |++||||++++||++||||+|+|.+..+
T Consensus 76 ~v~L~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 76 VIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp EEEECCSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred EEEeccCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence 9999 99 9999999999999999999999998774
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=4e-40 Score=253.80 Aligned_cols=105 Identities=38% Similarity=0.713 Sum_probs=97.4
Q ss_pred eeeEEEecCCCCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCccccCCCCeE
Q 038927 35 EGVGFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAFNTGSHS 114 (198)
Q Consensus 35 ~a~~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~~ 114 (198)
+|++|+|||+.||+++++ .+| ++||++++|+|||+|+|+|.++.|+|+||++++|+.|+. ++|+..+++|++.
T Consensus 1 ~a~~~~VG~~~GW~~~~~-----~~Y-~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~-~~p~~~~~~G~~~ 73 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVP-----YDY-AKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS-SSPAASYTSGADS 73 (109)
T ss_dssp CCCEEETTGGGCSCSSSC-----CCH-HHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCC-SSCSEEECSSEEE
T ss_pred CCcEEEeCCCCCccCCCC-----cCh-hHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccC-CCcccccCCCCEE
Confidence 368899999999999752 576 999999999999999999999999999999999999999 9999999999999
Q ss_pred EEeCC-ccEEEEcCCCCCCCCCCeEEEEecCCC
Q 038927 115 IHLKF-RSHYFRSDFPGHYEAGQKLEVVTTDGS 146 (198)
Q Consensus 115 v~L~~-G~~YFICgv~~HC~~GmKl~I~V~~~~ 146 (198)
|+|++ |++||||++++||++||||+|+|.++.
T Consensus 74 v~L~~~G~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 74 IPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp EECCSSEEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred EEECCCcCEEEECCCCCcccCCCEEEEEEcCCC
Confidence 99999 999999999999999999999998664
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=1.3e-39 Score=253.49 Aligned_cols=107 Identities=25% Similarity=0.569 Sum_probs=96.0
Q ss_pred eEEEecCCCCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCccccCCCCeEEE
Q 038927 37 VGFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAFNTGSHSIH 116 (198)
Q Consensus 37 ~~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~~v~ 116 (198)
++|+|||+.||+++.+ +.+| ++||++++|+|||+|+|+|.++.|+|+||+|++|++|+. ++++..+++|++.|+
T Consensus 2 ~~~~VG~~~GW~~~~~----~~~Y-~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~-~~~~~~~~~G~~~v~ 75 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSD----PKFY-ITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKK-ENPISHMTTPPVKIM 75 (116)
T ss_dssp CEEETTGGGCSSCCSS----TTHH-HHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCC-SSCSEEECSSSEEEE
T ss_pred eEEEECCcCcCcCCCC----Ccch-hhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCC-CCCccccCCCCeEEE
Confidence 4799999999999732 4566 999999999999999999999999999999999999999 999999999999999
Q ss_pred eCC-ccEEEEcCCCCCCCCCCeEEE-EecCCCCCC
Q 038927 117 LKF-RSHYFRSDFPGHYEAGQKLEV-VTTDGSLPR 149 (198)
Q Consensus 117 L~~-G~~YFICgv~~HC~~GmKl~I-~V~~~~~Pa 149 (198)
|++ |++||||++++||++||||+| +|.++.++.
T Consensus 76 l~~~G~~yFic~~~~HC~~Gmkl~In~V~~~~~~~ 110 (116)
T 1x9u_A 76 LNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGG 110 (116)
T ss_dssp CCSCEEEEEECCSTTTTTTTCEEEEEEECC-----
T ss_pred ECCCCCEEEECCCCCccccCCEEEEEEECCCCCCC
Confidence 999 999999999999999999999 888776443
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=4.8e-37 Score=231.60 Aligned_cols=95 Identities=28% Similarity=0.605 Sum_probs=90.3
Q ss_pred eEEEecCCCCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCccccCCCCeEEE
Q 038927 37 VGFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAFNTGSHSIH 116 (198)
Q Consensus 37 ~~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~~v~ 116 (198)
++|+|||+.||++ +| ++||++++|+|||+|+|+|.++.|+|+||++++|+.|+. ++|+..+++|++.|+
T Consensus 1 ~~~~VG~~~GW~~---------~y-~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~-~~~~~~~~~G~~~v~ 69 (96)
T 2cbp_A 1 AVYVVGGSGGWTF---------NT-ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT-PAGAKVYTSGRDQIK 69 (96)
T ss_dssp CEEETTGGGCSCS---------SC-TTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCC-CTTCEEECSSEEEEE
T ss_pred CEEEECCcCCCcc---------Ch-hhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCC-CCCcccccCCCeEEE
Confidence 3699999999987 24 999999999999999999999999999999999999999 999999999999999
Q ss_pred eCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 117 LKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 117 L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
| + |++||||++++||++||||+|+|+
T Consensus 70 L-~~g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 70 L-PKGQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp C-CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred e-cCCCEEEEcCCCCccccCCEEEEEEC
Confidence 9 8 999999999999999999999984
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.9e-33 Score=210.21 Aligned_cols=91 Identities=27% Similarity=0.583 Sum_probs=85.2
Q ss_pred eEEEecCCCCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCccccCCCCeEEE
Q 038927 37 VGFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAFNTGSHSIH 116 (198)
Q Consensus 37 ~~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~~v~ 116 (198)
++|+| ||+++ ++||++++|+|||+|+|+|.++.|+|+||++++|+.|+. ++|+..+++|++.|+
T Consensus 1 ~~y~V----gW~~~-----------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~-~~~~~~~~~G~~~v~ 64 (91)
T 1f56_A 1 AVYNI----GWSFN-----------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSA-PRGARTYSSGQDRIK 64 (91)
T ss_dssp CEEEE----ECSSS-----------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCC-CTTCEEECSSEEEEE
T ss_pred CEEEE----eCCCC-----------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCC-CCCcccccCCCcEEE
Confidence 36889 89983 799999999999999999999999999999999999999 999999999999999
Q ss_pred eCCccEEEEcCCCCCCCCCCeEEEEec
Q 038927 117 LKFRSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 117 L~~G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
|+.|++||||++++||++||||+|+|.
T Consensus 65 L~~g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 65 LTRGQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp CCSEEEEEECCSTTTTTTTCEEEEEEC
T ss_pred eCCCCeEEEcCCCCccccCCEEEEEEC
Confidence 944999999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.17 E-value=6.6e-11 Score=91.76 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=64.4
Q ss_pred eeeEEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcC-----CCCceEEEccc-ccccc---------
Q 038927 35 EGVGFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTN-----RTDNVKLVQRR-EFESC--------- 98 (198)
Q Consensus 35 ~a~~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~-----~~HsV~~V~~~-~Y~~C--------- 98 (198)
...++.|+-. .+|.+.|+ ..+++.||++.|.+.+ ..|+++..+.. ++..+
T Consensus 15 ~~~~v~V~~~~~~~~F~P~--------------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T 1qhq_A 15 PAQTVEVRAAPDALAFAQT--------------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNA 80 (140)
T ss_dssp CSEEEEEEBCSSSSSBSCS--------------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCG
T ss_pred CCEEEEEEEeCCCceEeCC--------------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcc
Confidence 4466777764 35888653 3489999999999876 47999887422 22111
Q ss_pred --------cC-----CCCCccccCCCCeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 99 --------NR-----RTRPIKAFNTGSHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 99 --------~~-----~s~pi~~~~sG~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
+. .+..+..-.++...|++++ |.|||+|++++||+.|||..|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 81 DALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp GGTTCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 00 0001111223344688888 999999999999999999999996
No 7
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=98.96 E-value=6e-10 Score=89.11 Aligned_cols=74 Identities=16% Similarity=0.278 Sum_probs=57.2
Q ss_pred CceEeCCEEEEEEcCC----CCceEEEc-ccccccccCCCCCcc-------ccCCCC---e--EEEeCC-ccEEEEcCCC
Q 038927 68 RNFTTGDTILFEYTNR----TDNVKLVQ-RREFESCNRRTRPIK-------AFNTGS---H--SIHLKF-RSHYFRSDFP 129 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~----~HsV~~V~-~~~Y~~C~~~s~pi~-------~~~sG~---~--~v~L~~-G~~YFICgv~ 129 (198)
.++++||+|+|++.+. .|++..++ ..+|+.|.. ...+. ....|. . .+++ + |+|||+|+++
T Consensus 63 i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 63 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPV-IDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCC-CCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhcccc-ccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 5788999999999753 59999995 567888876 44332 123333 3 4577 8 9999999999
Q ss_pred CCCCCCCeEEEEec
Q 038927 130 GHYEAGQKLEVVTT 143 (198)
Q Consensus 130 ~HC~~GmKl~I~V~ 143 (198)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.96 E-value=8.7e-10 Score=78.47 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=59.7
Q ss_pred EEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcC-CCCceEEEcccccccccCCCCCccccCCC-CeE
Q 038927 38 GFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTN-RTDNVKLVQRREFESCNRRTRPIKAFNTG-SHS 114 (198)
Q Consensus 38 ~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~-~~HsV~~V~~~~Y~~C~~~s~pi~~~~sG-~~~ 114 (198)
+..+|++ .+|.+.|+ ..++++||+|.|.+.. ..|+|...+..++. . . . .....| ...
T Consensus 4 ~v~~~~~~~~~~f~P~--------------~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~---~-~-~-~~~~~g~~~~ 63 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS--------------TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS---H-K-D-LAFSPGETFE 63 (91)
T ss_dssp EEEESCTTSCSSEESS--------------EEEECTTCEEEEEECSSCCEEEEETTCGGGC---E-E-E-EECSTTCEEE
T ss_pred EEEEecCCCccEEeCC--------------EEEECCCCEEEEEECCCCCcEEEEeCCCccC---c-c-c-ceeCCCCEEE
Confidence 3566764 45777653 2479999999999874 67999876533221 1 1 1 123344 457
Q ss_pred EEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 115 IHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 115 v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
+++++ |.|+|+|. .||..||+..|.|.
T Consensus 64 ~~f~~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 64 ATFSEPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EECCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEeCCCEEEEEEeC--CCccCCCEEEEEEC
Confidence 88988 99999998 89999999999984
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.66 E-value=3.2e-08 Score=72.15 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=59.7
Q ss_pred EEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcC-CCCceEEEcc---cccccccCCCCCccccCCCC
Q 038927 38 GFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTN-RTDNVKLVQR---REFESCNRRTRPIKAFNTGS 112 (198)
Q Consensus 38 ~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~-~~HsV~~V~~---~~Y~~C~~~s~pi~~~~sG~ 112 (198)
+..+|++ .++.+.|+ ..++++||++.|.+.. ..|+|...+. ++++.+.. .........|.
T Consensus 3 ~V~m~~~~~~~~F~P~--------------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~-~~~~~~~~~g~ 67 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVPS--------------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAI-SYDDYLNSKGE 67 (98)
T ss_dssp EEEESCTTSCCSEESS--------------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHH-CEEEEECSTTC
T ss_pred EEEEecCCCCcEEeCC--------------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccc-cccccccCCCC
Confidence 4456553 45777653 2478999999998875 4899877542 12333322 11101234454
Q ss_pred e-EEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 113 H-SIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 113 ~-~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
+ .+++++ |.|+|+|.. ||+.||+..|.|.
T Consensus 68 ~~~~tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 68 TVVRKLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EEEEECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EEEEEcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 4 788889 999999985 9999999999984
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.66 E-value=1.4e-07 Score=72.95 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=61.4
Q ss_pred eEEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcCC----CCceEEEccc------------------
Q 038927 37 VGFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNR----TDNVKLVQRR------------------ 93 (198)
Q Consensus 37 ~~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~~----~HsV~~V~~~------------------ 93 (198)
.++.||.. .++.+.|+ ..++++||++.|.+.+. .|++...+..
T Consensus 19 ~~V~v~~~~~~~~F~p~--------------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~ 84 (139)
T 2aan_A 19 VTIEIGSKGEELAFDKT--------------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAA 84 (139)
T ss_dssp EEEEEEBCTTSSSBSCS--------------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGG
T ss_pred EEEEEEecCCccEEcCC--------------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccc
Confidence 45667432 36777543 24789999999988753 6999887532
Q ss_pred ccccccCCCCCc---cccCCCCe-EEE--eCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 94 EFESCNRRTRPI---KAFNTGSH-SIH--LKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 94 ~Y~~C~~~s~pi---~~~~sG~~-~v~--L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
+|..|.. .+.+ .....|.+ .++ .++ |.|+|+|.+++||+ ||+..|.|.
T Consensus 85 ~~~p~~~-~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 85 NYLPADK-SNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TTCCSCC-TTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred cccCccc-ccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 4555543 2211 12344533 444 447 99999999999999 999999884
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.65 E-value=5.9e-08 Score=74.97 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=51.4
Q ss_pred CceEeCCEEEEEEcCCCCceEEEcccccccccCCCC--CccccCCC-CeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 68 RNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTR--PIKAFNTG-SHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~--pi~~~~sG-~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.++.+||+|.|.+....|+|.... .|.. .. ... ...| ...+++++ |.|+|+|. .||..||+..|+|.
T Consensus 23 i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p-~~~~~~~-~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1pmy_A 23 VRLKPGDSIKFLPTDKGHNVETIK-----GMAP-DGADYVK-TTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVG 93 (123)
T ss_dssp EEECTTCEEEEECSSSSCCCEECT-----TSSC-TTCCCCB-CCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEES
T ss_pred EEECCCCEEEEEECCCCcEEEEec-----ccCC-CCcccee-cCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEc
Confidence 478999999999987789998752 2322 11 111 1233 34789999 99999998 59999999999998
Q ss_pred CC
Q 038927 144 DG 145 (198)
Q Consensus 144 ~~ 145 (198)
++
T Consensus 94 ~~ 95 (123)
T 1pmy_A 94 DK 95 (123)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 12
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.62 E-value=1.5e-07 Score=68.75 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=58.5
Q ss_pred EEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcC-CCCceEEEccccc-----cc--ccCCCCCcccc
Q 038927 38 GFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTN-RTDNVKLVQRREF-----ES--CNRRTRPIKAF 108 (198)
Q Consensus 38 ~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~-~~HsV~~V~~~~Y-----~~--C~~~s~pi~~~ 108 (198)
+..+|.+ .++.+.|+ ..++++||++.|.+.. ..|+|...+.... +. +.. + .. ..
T Consensus 5 ~V~~~~~~~~~~F~P~--------------~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~-~~-~~ 67 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA--------------KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-K-QL-LM 67 (106)
T ss_dssp EEEESCTTCCSSEESS--------------EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-C-SC-CC
T ss_pred EEEEEecCCcceEcCC--------------EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-c-ce-ee
Confidence 4567654 56877653 2478999999999764 4799986532110 00 111 1 11 12
Q ss_pred CCC-CeEEEe---CC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 109 NTG-SHSIHL---KF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 109 ~sG-~~~v~L---~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
..| ...+++ ++ |.|+|.|. .||+.||+..|.|.
T Consensus 68 ~pG~~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 68 SPGQSTSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp STTCEEEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCCCEEEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 334 347888 78 99999999 89999999999986
No 13
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.61 E-value=7.1e-08 Score=74.53 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=51.0
Q ss_pred CceEeCCEEEEEEcCCCCceEEEcccccccccCCCC--CccccCCC-CeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 68 RNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTR--PIKAFNTG-SHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~--pi~~~~sG-~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.++.+||++.|.+....|+|.... .|.. .. .... ..| ...+++++ |.|+|+|. .||..||+..|+|.
T Consensus 23 i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p-~~~~~~~~-~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1paz_A 23 IKANPGDTVTFIPVDKGHNVESIK-----DMIP-EGAEKFKS-KINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVG 93 (123)
T ss_dssp EEECTTCEEEEEESSSSCCCEECT-----TCSC-TTCCCCBC-CTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred EEECCCCEEEEEECCCCeEEEEec-----ccCC-CCccceec-CCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEc
Confidence 478999999999987789998641 2322 11 1111 123 34789999 99999998 59999999999997
Q ss_pred CC
Q 038927 144 DG 145 (198)
Q Consensus 144 ~~ 145 (198)
++
T Consensus 94 ~~ 95 (123)
T 1paz_A 94 DS 95 (123)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 14
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.57 E-value=1.1e-07 Score=69.01 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=50.6
Q ss_pred CceEeCCEEEEEEcCC-CCceEEEccc---ccccccCC--CCCccccCCCC-eEEEeCC-ccEEEEcCCCCCCCCCCeEE
Q 038927 68 RNFTTGDTILFEYTNR-TDNVKLVQRR---EFESCNRR--TRPIKAFNTGS-HSIHLKF-RSHYFRSDFPGHYEAGQKLE 139 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-~HsV~~V~~~---~Y~~C~~~--s~pi~~~~sG~-~~v~L~~-G~~YFICgv~~HC~~GmKl~ 139 (198)
.++++||+|.|..... .|+|...+.. +.+.+..+ ...+ ....|. ..+++++ |.|+|+|. .||+.||+..
T Consensus 19 i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~-~~~~G~~~~~tf~~~G~y~~~C~--~H~~~gM~G~ 95 (99)
T 1plc_A 19 FSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDL-LNAKGETFEVALSNKGEYSFYCS--PHQGAGMVGK 95 (99)
T ss_dssp EEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCC-BCSTTCEEEEECCSCEEEEEECG--GGTTTTCEEE
T ss_pred EEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCcc-ccCCCCEEEEEECCCceEEEEcC--CCcccCCEEE
Confidence 4899999999988753 7999876421 22222110 0111 233443 4788999 99999998 8999999999
Q ss_pred EEec
Q 038927 140 VVTT 143 (198)
Q Consensus 140 I~V~ 143 (198)
|.|.
T Consensus 96 i~V~ 99 (99)
T 1plc_A 96 VTVN 99 (99)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 15
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.49 E-value=1.4e-07 Score=68.03 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=58.6
Q ss_pred EEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcCC-CCceEEEcc---cccccccCCCCCccccCCCC
Q 038927 38 GFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTNR-TDNVKLVQR---REFESCNRRTRPIKAFNTGS 112 (198)
Q Consensus 38 ~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~~-~HsV~~V~~---~~Y~~C~~~s~pi~~~~sG~ 112 (198)
+..+|++ .++.+.|+ ..++++||++.|..... .|++...+. ++++.+.. .........|.
T Consensus 3 ~V~m~~~~~~~~F~P~--------------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~-~~~~~~~~pG~ 67 (98)
T 2plt_A 3 TVKLGADSGALEFVPK--------------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAI-SRDDYLNAPGE 67 (98)
T ss_dssp EEEESCTTCCSSEESS--------------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHH-CEEEEECSTTC
T ss_pred EEEEecCCCCceEeCC--------------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccc-cccceecCCCC
Confidence 4566643 45777553 24789999999987753 799877532 12222211 00001234454
Q ss_pred e-EEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 113 H-SIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 113 ~-~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
+ .+++++ |.|.|.|. .||+.||+..|.|.
T Consensus 68 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 68 TYSVKLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEEEECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EEEEEeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 3 788899 99999999 79999999999984
No 16
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.49 E-value=2.9e-07 Score=66.41 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=50.0
Q ss_pred CceEeCCEEEEEEcC-CCCceEEEcccc---cccccCCCCCccccCCC-CeEEEeCC-ccEEEEcCCCCCCCCCCeEEEE
Q 038927 68 RNFTTGDTILFEYTN-RTDNVKLVQRRE---FESCNRRTRPIKAFNTG-SHSIHLKF-RSHYFRSDFPGHYEAGQKLEVV 141 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~-~~HsV~~V~~~~---Y~~C~~~s~pi~~~~sG-~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~ 141 (198)
.++++||++.|.... ..|++...+... .+.+.. . .. ....| ...+++++ |.|+|+|. .||+.||+..|.
T Consensus 21 i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~-~-~~-~~~~g~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~ 95 (97)
T 1b3i_A 21 LSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSN-T-KL-AIAPGSFYSVTLGTPGTYSFYCT--PHRGAGMVGTIT 95 (97)
T ss_dssp EEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCB-C-CC-CCSCSCCEEEECCSCSEEEEECS--STTTTTCEEEEE
T ss_pred EEECCCCEEEEEECCCCCeEEEEeCCCCccccccccc-c-ce-ecCCCCEEEEEeCCCeEEEEEcc--ChhhcCCEEEEE
Confidence 478999999999765 479998764221 111212 1 11 12333 45788888 99999998 899999999999
Q ss_pred ec
Q 038927 142 TT 143 (198)
Q Consensus 142 V~ 143 (198)
|.
T Consensus 96 V~ 97 (97)
T 1b3i_A 96 VE 97 (97)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 17
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.46 E-value=3.6e-07 Score=66.10 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=50.5
Q ss_pred CceEeCCEEEEEEcC-CCCceEEEcc---cccccccCC--CCCccccCCCC-eEEEeCC-ccEEEEcCCCCCCCCCCeEE
Q 038927 68 RNFTTGDTILFEYTN-RTDNVKLVQR---REFESCNRR--TRPIKAFNTGS-HSIHLKF-RSHYFRSDFPGHYEAGQKLE 139 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~-~~HsV~~V~~---~~Y~~C~~~--s~pi~~~~sG~-~~v~L~~-G~~YFICgv~~HC~~GmKl~ 139 (198)
.++++||++.|+... ..|+|...+. ++++.+... ...+ ....|. ..+++++ |.|.|+|. .||+.||+..
T Consensus 19 i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~-~~~~G~~~~~~f~~~G~y~~~C~--~H~~~gM~G~ 95 (99)
T 1byp_A 19 LSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDL-LNAPGEEYSVTLTEKGTYKFYCA--PHAGAGMVGK 95 (99)
T ss_dssp EEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCC-BCSTTCEEEEEECSCEEEEEECG--GGTTTTCEEE
T ss_pred EEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccce-eeCCCCEEEEEeCCCcEEEEEcC--CccccCCEEE
Confidence 378999999998775 3799877642 223332210 0011 234453 4788999 99999998 7999999999
Q ss_pred EEec
Q 038927 140 VVTT 143 (198)
Q Consensus 140 I~V~ 143 (198)
|.|.
T Consensus 96 i~V~ 99 (99)
T 1byp_A 96 VTVN 99 (99)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 18
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.45 E-value=2.6e-07 Score=72.01 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=51.7
Q ss_pred CceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCcccc--CCC-CeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 68 RNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPIKAF--NTG-SHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi~~~--~sG-~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.++++||++.|.+.+..|+|...+. +.+ .... .+ ..| ...+++++ |.|+|+|. .||..||+..|.|.
T Consensus 25 i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P-~g~~-~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~ 95 (127)
T 3tu6_A 25 IRAQPGDTVTFVAKDKGHNSALMKG-----GAP-EGAE-TWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVG 95 (127)
T ss_dssp EEECTTCEEEEECSSSSCCCEECTT-----CSC-TTCC-CCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred EEECCCCEEEEEECCCCceEEEccC-----cCC-CCcc-ceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 4899999999999877899987532 212 1110 11 123 34899999 99999998 69999999999998
Q ss_pred CC
Q 038927 144 DG 145 (198)
Q Consensus 144 ~~ 145 (198)
++
T Consensus 96 ~~ 97 (127)
T 3tu6_A 96 EP 97 (127)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 19
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.43 E-value=4.2e-07 Score=70.76 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=51.7
Q ss_pred CceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCc-cccCCC-CeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEecC
Q 038927 68 RNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPI-KAFNTG-SHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTTD 144 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi-~~~~sG-~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~~ 144 (198)
.++++||++.|.+....|||...+. +.. .... .....| .-.+++++ |.|.|+|. .||..||+..|.|..
T Consensus 24 i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p-~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 24 VKVEAGDTVKFVPTDKSHNAESVRE-----VWP-EGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEECTTCEEEEECSSSSCCCEECTT-----TSC-TTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEECCCCEEEEEECCCCccEEEeCC-----cCC-CCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEECC
Confidence 4899999999999888899987531 222 2111 011233 34889999 99999997 799999999999987
No 20
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.43 E-value=3.6e-07 Score=66.43 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=58.6
Q ss_pred EEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcC-CCCceEEEcccccc----cccCCCCCc----ccc
Q 038927 39 FSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTN-RTDNVKLVQRREFE----SCNRRTRPI----KAF 108 (198)
Q Consensus 39 ~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~-~~HsV~~V~~~~Y~----~C~~~s~pi----~~~ 108 (198)
..+|.+ .++.+.|+ ..++++||++.|.... ..|++...+..+++ .+.. ...+ ...
T Consensus 3 V~~g~~~~~~~F~P~--------------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (102)
T 1kdj_A 3 VEVGDEVGNFKFYPD--------------SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELK-AASMDENDLLS 67 (102)
T ss_dssp EEESCTTCCCCEESS--------------EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHH-HTSCCTTCCBB
T ss_pred EEEecCCCccEEeCC--------------EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhh-cccccccceec
Confidence 466664 44666542 2478999999998765 47999876433331 2221 1111 112
Q ss_pred CCC-CeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 109 NTG-SHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 109 ~sG-~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
..| ...+++++ |.|+|+|. .||+.||+..|.|.
T Consensus 68 ~pG~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 68 EDEPSFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp TTBCEEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 344 34788888 99999998 89999999999984
No 21
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.43 E-value=6.1e-07 Score=69.47 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=51.8
Q ss_pred CceEeCCEEEEEEcCCCCceEEEcccccccccCCCC--CccccCCCCeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEecC
Q 038927 68 RNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTR--PIKAFNTGSHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTTD 144 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~--pi~~~~sG~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~~ 144 (198)
.++++||++.|.+.+..|+|...+. +.+ .. ....-......+++++ |.|+|.|. .||..||+..|.|.+
T Consensus 23 i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P-~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 23 VRAEPGDVINFVPTDKSHNVEAIKE-----ILP-EGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp EEECTTEEEEEEESSTTCCCEECTT-----SSC-TTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred EEECCCCEEEEEECCCCceEEEcCC-----cCC-CCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 4899999999999887899986431 222 21 1111112234889999 99999998 799999999999986
Q ss_pred C
Q 038927 145 G 145 (198)
Q Consensus 145 ~ 145 (198)
.
T Consensus 95 ~ 95 (123)
T 3erx_A 95 A 95 (123)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.29 E-value=9e-07 Score=63.84 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=56.9
Q ss_pred EEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcC-CCCceEEEcccc--cccccCCCCCccccCCCC-
Q 038927 38 GFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTN-RTDNVKLVQRRE--FESCNRRTRPIKAFNTGS- 112 (198)
Q Consensus 38 ~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~-~~HsV~~V~~~~--Y~~C~~~s~pi~~~~sG~- 112 (198)
+..+|.+ .++.+.|+ ..++++||++.|.... ..|++...+... -+..+. .........|.
T Consensus 4 ~V~~~~~~~~~~F~P~--------------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~-~~~~~~~~pG~~ 68 (98)
T 1pcs_A 4 TVKMGSDSGALVFEPS--------------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKL-SHKGLLFAAGES 68 (98)
T ss_dssp EEEESCTTSCSSEESS--------------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHH-CEEEEECSTTCE
T ss_pred EEEEecCCCccEEeCC--------------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccc-cccccccCCCCE
Confidence 3466654 45777543 2478999999999764 479987653210 000111 00001223443
Q ss_pred eEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 113 HSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 113 ~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
..+++++ |.|+|.|. .||..||+..|.|.
T Consensus 69 ~~~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 69 FTSTFTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEcCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 4788888 99999998 79999999999984
No 23
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.70 E-value=0.00029 Score=54.74 Aligned_cols=90 Identities=10% Similarity=0.149 Sum_probs=57.3
Q ss_pred EEEecCCCCCCCCCCCCCCCcchhhccccCCceEeC-CEEEEEEcC-C-------CCceEEEcccccc------------
Q 038927 38 GFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNFTTG-DTILFEYTN-R-------TDNVKLVQRREFE------------ 96 (198)
Q Consensus 38 ~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F~VG-DtLvF~Y~~-~-------~HsV~~V~~~~Y~------------ 96 (198)
+..|+.+.++.+.|. .+ +++.| |.+.|.+.+ + .|+++..+..+.+
T Consensus 4 ~v~i~~~d~m~F~p~------~i--------~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~ 69 (129)
T 1cuo_A 4 ETTVTSGDTMTYSTR------SI--------SVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGAD 69 (129)
T ss_dssp EEEEEECSSSCCSCS------EE--------EEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGG
T ss_pred EEEEEeCCCceEccC------eE--------EEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccc
Confidence 345665566777653 33 78899 988777754 2 3999887543221
Q ss_pred ----cccCCCCCc---cccCCCCe---EEEeC---C-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 97 ----SCNRRTRPI---KAFNTGSH---SIHLK---F-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 97 ----~C~~~s~pi---~~~~sG~~---~v~L~---~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.=+. .+-+ .....|.+ +|+.+ + |+|+|+|++++|=+ |||-.|.|.
T Consensus 70 ~~~v~~~~-~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 70 NNFVTPGD-KRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp GTTSCTTC-TTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred cccccccc-ccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 0001 1111 12344533 44443 7 99999999999999 999999986
No 24
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.70 E-value=3.1e-05 Score=56.36 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=42.5
Q ss_pred CceEeCCEEEEEEcCCC---CceEEEcccccccccCCCCCccccCCCCe---EEEeCC-ccEEEEcCCCCCCCCCCeEEE
Q 038927 68 RNFTTGDTILFEYTNRT---DNVKLVQRREFESCNRRTRPIKAFNTGSH---SIHLKF-RSHYFRSDFPGHYEAGQKLEV 140 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~---HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~---~v~L~~-G~~YFICgv~~HC~~GmKl~I 140 (198)
.++.+||++.|.+.+.. |++.. ...+.+ .....|.. .++.++ |.|.|.|. .||..||+..|
T Consensus 30 i~v~~G~tV~~~~~n~d~~~H~~~~-~~~~~~---------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i 97 (100)
T 4hci_A 30 ITIPINESTTLLLKNKGKSEHTFTI-KKLGID---------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV 97 (100)
T ss_dssp EEECTTSCEEEEEEECSSSCEEEEE-GGGTEE---------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred EEECCCCEEEEEEEcCCCceEEEEE-ecCCcc---------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence 48999999999886432 55433 111100 11223322 455678 99999996 69999999999
Q ss_pred Eec
Q 038927 141 VTT 143 (198)
Q Consensus 141 ~V~ 143 (198)
.|.
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
No 25
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.69 E-value=0.0001 Score=53.22 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=55.4
Q ss_pred EEEecCC-CCCCCCCCCCCCCcchhhccccCCceEeCCEEEEEEcC-CCCceEEEcccccccccCC---C---CCccccC
Q 038927 38 GFSKTHK-VEWRKPNPEEGMDVDYYKKWASSRNFTTGDTILFEYTN-RTDNVKLVQRREFESCNRR---T---RPIKAFN 109 (198)
Q Consensus 38 ~~~VGg~-~GW~~p~~~~~~~~~YYt~WAs~~~F~VGDtLvF~Y~~-~~HsV~~V~~~~Y~~C~~~---s---~pi~~~~ 109 (198)
+..+|.+ .+..++|+ ..+++.||++.|.... ..|++..-... + .+..+ . .......
T Consensus 4 ~V~~~~~~~~~~f~p~--------------~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~ 67 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA--------------NVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFS 67 (105)
T ss_dssp EEEESCTTCCSCEESS--------------EEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECS
T ss_pred EEEEeecCCccEEeCC--------------EEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccC
Confidence 4566654 56777653 2378899999998653 46888764311 1 11000 0 0001123
Q ss_pred CCC-eEEEe---CC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 110 TGS-HSIHL---KF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 110 sG~-~~v~L---~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.|. ..+++ ++ |+|+|.|. .|+..||+..|.|.
T Consensus 68 pG~~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 68 PGESYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp TTCEEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCCeEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 343 36777 67 99999998 79999999999986
No 26
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.67 E-value=0.0001 Score=60.03 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=58.7
Q ss_pred eEEEecCCCCCCCCCCCCCCCcchhhccccCCce-EeCCEEEEEEcC-C-------CCceEEEcccccccc---------
Q 038927 37 VGFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNF-TTGDTILFEYTN-R-------TDNVKLVQRREFESC--------- 98 (198)
Q Consensus 37 ~~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F-~VGDtLvF~Y~~-~-------~HsV~~V~~~~Y~~C--------- 98 (198)
.++.|+.+.++.+.|. .+ ++ +.||++.|.+.+ + .|+++..+..+++.=
T Consensus 43 ~~V~I~~~d~m~F~P~------~i--------tV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~ 108 (167)
T 3ay2_A 43 CAATVESNDNMQFNTK------DI--------QVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAAD 108 (167)
T ss_dssp CEEEEEECTTSCBSCS------EE--------EEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGG
T ss_pred eEEEEEeCCCceEecc------eE--------EEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccc
Confidence 4677776667877653 22 66 679987777653 2 299888764432210
Q ss_pred ------cCCCCCc---cccCCCCe-EEEeC----C-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 99 ------NRRTRPI---KAFNTGSH-SIHLK----F-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 99 ------~~~s~pi---~~~~sG~~-~v~L~----~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
+. .+.+ .....|.+ .|+++ + |.|+|+|.+++|=+ |||..|+|.
T Consensus 109 ~~~v~~~d-~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 109 TDYVKPDD-ARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp GTTSCTTC-TTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cccccccc-cchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 01 1111 12344543 56664 7 99999999999998 999999986
No 27
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.66 E-value=6.9e-05 Score=57.88 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=44.9
Q ss_pred CceEeCCEEEEEEcCC-CCceEEEcccccccccCCCCCccccCCCC-eEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 68 RNFTTGDTILFEYTNR-TDNVKLVQRREFESCNRRTRPIKAFNTGS-HSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~-~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.++++||++.|..... .|+|...+..+ ..=.. .. .....|. ..+++++ |.|.|.|.. |. ||+..|.|.
T Consensus 62 i~V~~GdtV~~~N~d~~~H~v~~~~~~~-g~~~~-~s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 62 VTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAF-RG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEECTTCEEEEEECSSSCBCCEECTTTS-SSSCE-EC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEECCCCEEEEEECCCCceEEEEeCCCC-Ccccc-cc--cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 4788999999986543 69987753221 00001 00 1123343 3788889 999999986 75 999999884
No 28
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.59 E-value=5.1e-05 Score=62.74 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=51.6
Q ss_pred eEeCCEEEEE---EcC------CCCceEEEcccccccccCCCCCcccc--C--CCCeEEEeC--------------C-cc
Q 038927 70 FTTGDTILFE---YTN------RTDNVKLVQRREFESCNRRTRPIKAF--N--TGSHSIHLK--------------F-RS 121 (198)
Q Consensus 70 F~VGDtLvF~---Y~~------~~HsV~~V~~~~Y~~C~~~s~pi~~~--~--sG~~~v~L~--------------~-G~ 121 (198)
.++||.|-+- |.. ..+.+.+|++++|++|+....+...+ + .+...+++. . -.
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4569999884 432 23788999999999999822222122 1 233344442 4 48
Q ss_pred EEEEcCCC-----------CCCCC-CCeEEEEecCCC
Q 038927 122 HYFRSDFP-----------GHYEA-GQKLEVVTTDGS 146 (198)
Q Consensus 122 ~YFICgv~-----------~HC~~-GmKl~I~V~~~~ 146 (198)
|||||.-. |+|.. +|||.|.|...+
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~ 142 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDA 142 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCC
Confidence 99999853 78974 999999997655
No 29
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.55 E-value=8.9e-05 Score=56.83 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=48.1
Q ss_pred CceEeCCEEEEEEcCCCCceEEEcccccccccCCCC--CccccCCC-CeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 68 RNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTR--PIKAFNTG-SHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~--pi~~~~sG-~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.++++||++.|......|+|...+ .+-. .. .... ..| ...+++++ |.|+|+|.. |.. |+..|.|.
T Consensus 23 i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p-~~~~~~~~-~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~ 91 (122)
T 2ux6_A 23 LKVAPGDTVTFIPTDKGHNVETIK-----GMIP-DGAEAFKS-KINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG 91 (122)
T ss_dssp EEECTTEEEEEEESSSSCCCEECT-----TCSC-TTCCCCBC-CTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred EEECCCCEEEEEECCCCcEEEEcc-----cccC-CCcceeec-CCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence 478899999999987789998753 1222 11 1111 123 34788999 999999986 887 99999997
Q ss_pred CC
Q 038927 144 DG 145 (198)
Q Consensus 144 ~~ 145 (198)
+.
T Consensus 92 ~~ 93 (122)
T 2ux6_A 92 DA 93 (122)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 30
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.50 E-value=0.00086 Score=52.02 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=54.2
Q ss_pred EEecCCCCCCCCCCCCCCCcchhhccccCCce-EeCCEEEEEEcCC--------CCceEEEcccccc-------------
Q 038927 39 FSKTHKVEWRKPNPEEGMDVDYYKKWASSRNF-TTGDTILFEYTNR--------TDNVKLVQRREFE------------- 96 (198)
Q Consensus 39 ~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F-~VGDtLvF~Y~~~--------~HsV~~V~~~~Y~------------- 96 (198)
+.|+.+.++.+.|. . .++ +.||++.|.+.+. .|+++..+..+.+
T Consensus 4 v~v~~~d~m~F~p~------~--------i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~ 69 (128)
T 2iaa_C 4 VSIEGNDSMQFNTK------S--------IVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNN 69 (128)
T ss_dssp EEEEECTTSCBSCS------E--------EEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGG
T ss_pred EEEEeCCCceEecC------E--------EEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccc
Confidence 35655566777653 1 245 5599888877543 3999877543221
Q ss_pred ---cccCCCCCc---cccCCCCe-EEE--eC--C-c-cEEEEcCCCCCCCCCCeEEEEec
Q 038927 97 ---SCNRRTRPI---KAFNTGSH-SIH--LK--F-R-SHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 97 ---~C~~~s~pi---~~~~sG~~-~v~--L~--~-G-~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.=+. .+-+ .....|.+ .++ .. + | .|.|+|++++|=+ |||-.|+|.
T Consensus 70 ~~~~~~~-~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 70 DYVKAGD-ERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp TTSCTTC-TTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred ccccccc-chhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 1011 1111 12344533 444 43 6 8 5999999999999 999999986
No 31
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.35 E-value=0.00094 Score=51.80 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=53.8
Q ss_pred EEEecCCCCCCCCCCCCCCCcchhhccccCCce-EeCCEEEEEEcCC--------CCceEEEcccccc------------
Q 038927 38 GFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNF-TTGDTILFEYTNR--------TDNVKLVQRREFE------------ 96 (198)
Q Consensus 38 ~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F-~VGDtLvF~Y~~~--------~HsV~~V~~~~Y~------------ 96 (198)
++.|+.+.+..+.|. .+ ++ +.||++.|.+.+. .|+++..+..+.+
T Consensus 4 ~v~v~~~d~m~F~p~------~i--------~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~ 69 (129)
T 2ccw_A 4 EATVESNDAMQYNVK------EI--------VVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLA 69 (129)
T ss_dssp EEEEEECTTSCBSCS------EE--------EECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGG
T ss_pred EEEEEeCCCccEecc------eE--------EEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccc
Confidence 345665556777542 11 44 5599877777542 3999887543221
Q ss_pred ----cccCCCCCc---cccCCCCe---EEEeC--C-cc-EEEEcCCCCCCCCCCeEEEEec
Q 038927 97 ----SCNRRTRPI---KAFNTGSH---SIHLK--F-RS-HYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 97 ----~C~~~s~pi---~~~~sG~~---~v~L~--~-G~-~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.=+. .+-+ .....|.+ +|+.+ + |. |+|+|++++|=+ |||-.|+|.
T Consensus 70 ~~~~~~~~-~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 70 QDYVKAGD-TRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp GTTSCTTC-TTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccccccc-ccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 1011 1111 12344433 44444 5 55 999999999988 999999986
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.34 E-value=0.0003 Score=54.65 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=55.5
Q ss_pred EEEecCCCCCCCCCCCCCCCcchhhccccCCce-EeCCEEEEEEcCC--------CCceEEEcccccc------------
Q 038927 38 GFSKTHKVEWRKPNPEEGMDVDYYKKWASSRNF-TTGDTILFEYTNR--------TDNVKLVQRREFE------------ 96 (198)
Q Consensus 38 ~~~VGg~~GW~~p~~~~~~~~~YYt~WAs~~~F-~VGDtLvF~Y~~~--------~HsV~~V~~~~Y~------------ 96 (198)
++.|+.+.++.+.|. .+ ++ +.||++.|.+.+. .|+++..+..+.+
T Consensus 4 ~v~v~~~d~m~F~p~------~i--------~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~ 69 (128)
T 1nwp_A 4 KVTVDSTDQMSFNTK------DI--------AIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGID 69 (128)
T ss_dssp EEEEEECTTSCBSCS------EE--------EECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGG
T ss_pred EEEEEeCCCccEecC------EE--------EEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccc
Confidence 346666667888653 22 66 7799888877543 3998876543221
Q ss_pred ----cccCCCCCc---cccCCCCe-EE--EeC--C-cc-EEEEcCCCCCCCCCCeEEEEec
Q 038927 97 ----SCNRRTRPI---KAFNTGSH-SI--HLK--F-RS-HYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 97 ----~C~~~s~pi---~~~~sG~~-~v--~L~--~-G~-~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.=+. .+-+ .....|.+ .+ +.. + |. |.|+|++++|=+ |||-.|+|.
T Consensus 70 ~~~~~~~~-~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 70 KQYLKDGD-ARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp GTTSCTTC-TTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cccccccc-chhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 0000 1111 12344533 44 443 5 65 999999999999 999999884
No 33
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.16 E-value=0.0014 Score=48.37 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=44.7
Q ss_pred CceEeCCEEEEEEcCC-CCceEEEcccccccccCCCCCccccCCCC-eEEEeCC-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 68 RNFTTGDTILFEYTNR-TDNVKLVQRREFESCNRRTRPIKAFNTGS-HSIHLKF-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~-~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
.++++||++.|..... .|+|...+... ..=.. .. .....|. ..+++++ |.|.|.|.. |. ||+..|.|.
T Consensus 36 i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~-~s--~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 36 VTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAF-RG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEECTTCEEEEEECSSSCBCCEECTTTS-SSSCE-EC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCC-Ccccc-cc--cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 4788999999986543 69987643210 00001 00 1123343 3788889 999999987 76 999999884
No 34
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.11 E-value=0.00075 Score=49.51 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=44.1
Q ss_pred CceEeCCEEEEEEcCC-CCceEEEcccc----cccccCCCCCccccCCCC-eEEEeCC-ccEEEEcCCCCCCCCCCeEEE
Q 038927 68 RNFTTGDTILFEYTNR-TDNVKLVQRRE----FESCNRRTRPIKAFNTGS-HSIHLKF-RSHYFRSDFPGHYEAGQKLEV 140 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-~HsV~~V~~~~----Y~~C~~~s~pi~~~~sG~-~~v~L~~-G~~YFICgv~~HC~~GmKl~I 140 (198)
.++++||++.|..... .|+|...+..+ |++. ....|. ..+++++ |.|+|.|.. |- ||+..|
T Consensus 35 i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~--------~~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~i 102 (105)
T 2ov0_A 35 LHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP--------MMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGKV 102 (105)
T ss_dssp EEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC--------CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred EEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc--------ccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEE
Confidence 4789999999986543 69987643211 2211 123343 3678889 999999987 54 999999
Q ss_pred Eec
Q 038927 141 VTT 143 (198)
Q Consensus 141 ~V~ 143 (198)
.|.
T Consensus 103 ~V~ 105 (105)
T 2ov0_A 103 VVE 105 (105)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.83 E-value=0.0011 Score=54.72 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=48.3
Q ss_pred CceEeCCEEEEE---EcC-------CCCceEEEcccccccccCCCCCc-ccc------C-CCCeEEEe------------
Q 038927 68 RNFTTGDTILFE---YTN-------RTDNVKLVQRREFESCNRRTRPI-KAF------N-TGSHSIHL------------ 117 (198)
Q Consensus 68 ~~F~VGDtLvF~---Y~~-------~~HsV~~V~~~~Y~~C~~~s~pi-~~~------~-sG~~~v~L------------ 117 (198)
...++||.|-+- |+. ....+..|++++|++|+. ++.- ..+ . .|...+++
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~-~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~ 130 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDH-TSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 130 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCC-TTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccC-CCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCc
Confidence 357789999873 442 345677999999999987 4321 112 1 13333332
Q ss_pred --CC-ccEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 038927 118 --KF-RSHYFRSDF-----PGHYEAGQKLEVVTTDGS 146 (198)
Q Consensus 118 --~~-G~~YFICgv-----~~HC~~GmKl~I~V~~~~ 146 (198)
.. -.||||++- ++-| |||.|.|....
T Consensus 131 EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~ 164 (177)
T 2x11_B 131 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 164 (177)
T ss_dssp CCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTT
T ss_pred cccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCC
Confidence 23 468999852 2346 99999998765
No 36
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.80 E-value=0.0021 Score=51.23 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=49.0
Q ss_pred ceEeCCEEEEE---EcC---------CCCceEEEcccccccccCCCCCcccc----CCCCeEEE--------------eC
Q 038927 69 NFTTGDTILFE---YTN---------RTDNVKLVQRREFESCNRRTRPIKAF----NTGSHSIH--------------LK 118 (198)
Q Consensus 69 ~F~VGDtLvF~---Y~~---------~~HsV~~V~~~~Y~~C~~~s~pi~~~----~sG~~~v~--------------L~ 118 (198)
..++||.|-+- |.. ....+..|++++|++|+....+...+ -.+...++ ..
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~ 102 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR 102 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence 56789999874 432 34567899999999999821332222 12222222 23
Q ss_pred C-ccEEEEcCC-----------CCCCC-CCCeEEEEec
Q 038927 119 F-RSHYFRSDF-----------PGHYE-AGQKLEVVTT 143 (198)
Q Consensus 119 ~-G~~YFICgv-----------~~HC~-~GmKl~I~V~ 143 (198)
. -.||||+.- +|-|. ..|||.|.|.
T Consensus 103 pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 103 SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 4 579999963 35787 4899999986
No 37
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.34 E-value=0.004 Score=51.62 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=47.1
Q ss_pred CceEeCCEEEEE---EcC--------CCCceEEEcccccccccCCCC-Ccccc------C-CCCeEEE------------
Q 038927 68 RNFTTGDTILFE---YTN--------RTDNVKLVQRREFESCNRRTR-PIKAF------N-TGSHSIH------------ 116 (198)
Q Consensus 68 ~~F~VGDtLvF~---Y~~--------~~HsV~~V~~~~Y~~C~~~s~-pi~~~------~-sG~~~v~------------ 116 (198)
..+++||.|-+- |+. ....+..|++++|++|+. .+ +...+ . .|...++
T Consensus 50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~-~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~G 128 (182)
T 3czu_B 50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQP-QSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 128 (182)
T ss_dssp EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCC-CCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTS
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccC-CCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCC
Confidence 467789999873 432 235677999999999987 42 22221 1 1223333
Q ss_pred --eCC-ccEEEEcC----CCCCCCCCCeEEEEecCCC
Q 038927 117 --LKF-RSHYFRSD----FPGHYEAGQKLEVVTTDGS 146 (198)
Q Consensus 117 --L~~-G~~YFICg----v~~HC~~GmKl~I~V~~~~ 146 (198)
... -.||||+. .+|.| |||.|.|....
T Consensus 129 lEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~ 162 (182)
T 3czu_B 129 KEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKI 162 (182)
T ss_dssp CCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC--
T ss_pred eeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCC
Confidence 234 46899996 34566 99999997655
No 38
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=95.99 E-value=0.0074 Score=47.92 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=48.0
Q ss_pred CceEeCCEEEEE---EcC-------CCCceEEEcccccccccCCCCC-cccc------C-CCCeEEEe------------
Q 038927 68 RNFTTGDTILFE---YTN-------RTDNVKLVQRREFESCNRRTRP-IKAF------N-TGSHSIHL------------ 117 (198)
Q Consensus 68 ~~F~VGDtLvF~---Y~~-------~~HsV~~V~~~~Y~~C~~~s~p-i~~~------~-sG~~~v~L------------ 117 (198)
...++||.|-+- |.. ....+..|++++|++|+. ++. ...+ . .|...+++
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~-~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~ 101 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDH-TSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 101 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCS-SSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccC-CCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCce
Confidence 357789999873 442 245677999999999987 432 1122 1 13334332
Q ss_pred --CC-ccEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 038927 118 --KF-RSHYFRSDF-----PGHYEAGQKLEVVTTDGS 146 (198)
Q Consensus 118 --~~-G~~YFICgv-----~~HC~~GmKl~I~V~~~~ 146 (198)
.. -.||||+.- ++-| |||.|.|.+..
T Consensus 102 EF~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 102 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred eecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 24 468999852 2446 99999998653
No 39
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=95.65 E-value=0.017 Score=42.23 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=40.9
Q ss_pred CceEeCCEEEEEEcCC---CCceEEEcccccccccCCCCCccccCCCCe-EEEe--CC-ccEEEEcCCCCCCC-CCCeEE
Q 038927 68 RNFTTGDTILFEYTNR---TDNVKLVQRREFESCNRRTRPIKAFNTGSH-SIHL--KF-RSHYFRSDFPGHYE-AGQKLE 139 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~---~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~-~v~L--~~-G~~YFICgv~~HC~-~GmKl~ 139 (198)
.+++.||.+.|.+.+. .|++.. ...+. ++ ....|.+ .+++ ++ |.|+|.|.. ||. .+|+..
T Consensus 40 i~v~~G~~V~~~~~n~d~~~H~~~i-~~~~~-~~--------~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 40 LVVKKGDAVKVVVENKSPISEGFSI-DAFGV-QE--------VIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEETTCEEEEEEEECSSSCEEEEE-GGGTE-EE--------EECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEeCCCEEEEEEEECCCCeEEEEE-cCCCc-ee--------EeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 4789999999987643 466543 21110 11 1233432 4444 88 999999986 774 349999
Q ss_pred EEec
Q 038927 140 VVTT 143 (198)
Q Consensus 140 I~V~ 143 (198)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9886
No 40
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=95.25 E-value=0.024 Score=45.01 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=48.3
Q ss_pred ceEeCCEEEEE---EcC------CCCceEEEcccccccccCCCCCcccc----CCCCeEEEe--------------CC-c
Q 038927 69 NFTTGDTILFE---YTN------RTDNVKLVQRREFESCNRRTRPIKAF----NTGSHSIHL--------------KF-R 120 (198)
Q Consensus 69 ~F~VGDtLvF~---Y~~------~~HsV~~V~~~~Y~~C~~~s~pi~~~----~sG~~~v~L--------------~~-G 120 (198)
..++||.|.+- |+. ....+..|++++|++|+...++...+ -.+...+++ .. -
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34579999884 432 24677889999999998822232222 123333332 23 4
Q ss_pred cEEEEcCCC-----------CCCC-CCCeEEEEecC
Q 038927 121 SHYFRSDFP-----------GHYE-AGQKLEVVTTD 144 (198)
Q Consensus 121 ~~YFICgv~-----------~HC~-~GmKl~I~V~~ 144 (198)
.||||+.-. |-|. ..|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 688999732 4787 48999999974
No 41
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=94.31 E-value=0.57 Score=36.30 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=42.4
Q ss_pred ceEe-CCEEEEEEcC-C-------CCceEEEccccccc--------------ccCC-CCCc---cccCCCCe---EEEeC
Q 038927 69 NFTT-GDTILFEYTN-R-------TDNVKLVQRREFES--------------CNRR-TRPI---KAFNTGSH---SIHLK 118 (198)
Q Consensus 69 ~F~V-GDtLvF~Y~~-~-------~HsV~~V~~~~Y~~--------------C~~~-s~pi---~~~~sG~~---~v~L~ 118 (198)
++.. |+++.|.+.+ + .||++..+.++-+. =... .+-+ .....|.+ +++..
T Consensus 21 ~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf~~~ 100 (125)
T 3fsa_A 21 TVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVS 100 (125)
T ss_dssp EECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEEEGG
T ss_pred EEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEEeCc
Confidence 4433 9999888875 3 39999874322211 0010 1111 12345543 44444
Q ss_pred ---C-ccEEEEcCCCCCCCCCCeEEEEec
Q 038927 119 ---F-RSHYFRSDFPGHYEAGQKLEVVTT 143 (198)
Q Consensus 119 ---~-G~~YFICgv~~HC~~GmKl~I~V~ 143 (198)
+ |.|-|+|+ +|= |||-.|.|.
T Consensus 101 ~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 101 KLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp GC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 7 99999999 887 999999874
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=94.26 E-value=0.052 Score=43.93 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=46.0
Q ss_pred CceEeCCEEEEE---EcC--------CCCceEEEcccccccccCCCCC-cccc------C-CCCeEEE------------
Q 038927 68 RNFTTGDTILFE---YTN--------RTDNVKLVQRREFESCNRRTRP-IKAF------N-TGSHSIH------------ 116 (198)
Q Consensus 68 ~~F~VGDtLvF~---Y~~--------~~HsV~~V~~~~Y~~C~~~s~p-i~~~------~-sG~~~v~------------ 116 (198)
..+++||.|-+- |.. ....+..|++++|++|+. ... ...+ . .|...++
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~-~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G 110 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDH-RQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLG 110 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCC-TTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTS
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccC-CCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCC
Confidence 457789999884 432 223477999999999987 432 1122 1 1222332
Q ss_pred --eCC-ccEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 038927 117 --LKF-RSHYFRSDF-----PGHYEAGQKLEVVTTDGS 146 (198)
Q Consensus 117 --L~~-G~~YFICgv-----~~HC~~GmKl~I~V~~~~ 146 (198)
... -.||||+.- ++-| |||.|.|....
T Consensus 111 ~EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 111 FEFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 233 469999963 3446 58888877553
No 43
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=94.16 E-value=0.17 Score=39.18 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=42.2
Q ss_pred CceEeCCEEEEEEcCC--CCceEEEcccccccccCCCCCccccCCCC---eEEEeCC-ccEEEEcCCCCCCC---CCCeE
Q 038927 68 RNFTTGDTILFEYTNR--TDNVKLVQRREFESCNRRTRPIKAFNTGS---HSIHLKF-RSHYFRSDFPGHYE---AGQKL 138 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~--~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~---~~v~L~~-G~~YFICgv~~HC~---~GmKl 138 (198)
.++.+||.+.|..++. .|++.. .+.+.+ .....|. -.++.++ |.|+|.|.. +|- .+|+.
T Consensus 62 l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~k---------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~g 129 (135)
T 2cua_A 62 IEVPQGAEIVFKITSPDVIHGFHV-EGTNIN---------VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFG 129 (135)
T ss_dssp EEEETTSEEEEEEEBSSSCEEEEE-TTSSCE---------EEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCEE
T ss_pred EEEcCCCEEEEEEEeCCccceEEe-cCCCce---------eEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCEE
Confidence 4789999999998653 355432 111100 0112342 3678889 999999976 443 68999
Q ss_pred EEEecC
Q 038927 139 EVVTTD 144 (198)
Q Consensus 139 ~I~V~~ 144 (198)
.|.|.+
T Consensus 130 ~v~V~~ 135 (135)
T 2cua_A 130 TIVVKE 135 (135)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999863
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=92.51 E-value=0.13 Score=45.82 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=49.9
Q ss_pred CCceEeCCEEEEEEcCC---CCceEEEcccccccccCCCCCccccCCCCeEEEeCC-ccEEEEcCCCCCCCCCCeEEEEe
Q 038927 67 SRNFTTGDTILFEYTNR---TDNVKLVQRREFESCNRRTRPIKAFNTGSHSIHLKF-RSHYFRSDFPGHYEAGQKLEVVT 142 (198)
Q Consensus 67 ~~~F~VGDtLvF~Y~~~---~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~~v~L~~-G~~YFICgv~~HC~~GmKl~I~V 142 (198)
..+++.||+++|++.+. .|++..-.......|.. . | -.+-.-.|++++ |++||.|.+.+|=..||+..|.|
T Consensus 56 ~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i-~-p---G~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~V 130 (447)
T 2dv6_A 56 TLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN-G-K---NASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQV 130 (447)
T ss_dssp CEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC-S-T---TBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEEE
T ss_pred eEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec-C-C---CCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEEE
Confidence 45788999999988653 37764322222223332 1 1 111122566688 99999999988988899999999
Q ss_pred cCCC
Q 038927 143 TDGS 146 (198)
Q Consensus 143 ~~~~ 146 (198)
....
T Consensus 131 ~~~~ 134 (447)
T 2dv6_A 131 LPGN 134 (447)
T ss_dssp ESSC
T ss_pred eCCc
Confidence 8654
No 45
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=92.06 E-value=0.23 Score=39.00 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=44.5
Q ss_pred CceEeCCEEEE---EEcC--------CCCceEEEcccccccccCCCC-Ccccc------C-CCCeEEEe-----------
Q 038927 68 RNFTTGDTILF---EYTN--------RTDNVKLVQRREFESCNRRTR-PIKAF------N-TGSHSIHL----------- 117 (198)
Q Consensus 68 ~~F~VGDtLvF---~Y~~--------~~HsV~~V~~~~Y~~C~~~s~-pi~~~------~-sG~~~v~L----------- 117 (198)
...++||.|-+ +|+. ....+..|++++|++|+. .. +...+ . .|...+++
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~-~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G 100 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQP-QSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 100 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCC-SCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTS
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccC-CCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCC
Confidence 35678999987 4433 235677899999999997 43 32222 1 23333332
Q ss_pred ---CC-ccEEEEcCCCCCCC--CCCeEEEEec
Q 038927 118 ---KF-RSHYFRSDFPGHYE--AGQKLEVVTT 143 (198)
Q Consensus 118 ---~~-G~~YFICgv~~HC~--~GmKl~I~V~ 143 (198)
.. ..|||||. +.|=. .=+||.|.|.
T Consensus 101 ~EF~pG~~YY~ISt-~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 101 KEFKEGHSYYYISK-PIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCCTTCEEEEEEE-ESSCCCCSCCEEEEEEC
T ss_pred eeecCCCcEEEEEc-cCCCCCCcceEEEEEEE
Confidence 24 46889987 32211 1278888774
No 46
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=86.82 E-value=1.2 Score=42.55 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=42.9
Q ss_pred CceEeCCEEEEEEcCC------CCceEEEcccccccccCCCCCccccCCCC---eEEEeCC-ccEEEEcCC---CCCCCC
Q 038927 68 RNFTTGDTILFEYTNR------TDNVKLVQRREFESCNRRTRPIKAFNTGS---HSIHLKF-RSHYFRSDF---PGHYEA 134 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~------~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~---~~v~L~~-G~~YFICgv---~~HC~~ 134 (198)
.++.+||++.|...+. .|++..-+ .+. .+. ...|. -.++.++ |.|||.|.. ..| .
T Consensus 515 I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv-~~~--------i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~ 582 (595)
T 1fwx_A 515 FTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGV-AME--------IGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M 582 (595)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEETT-TTE-EEE--------ECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeEEecC-CCc-cee--------eCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence 3788999999998652 35554311 110 011 12333 2677888 999999983 345 4
Q ss_pred CCeEEEEecCC
Q 038927 135 GQKLEVVTTDG 145 (198)
Q Consensus 135 GmKl~I~V~~~ 145 (198)
||+..|.|.+.
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999864
No 47
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.88 E-value=2.7 Score=40.60 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=42.3
Q ss_pred CceEeCCEEEEEEcCC------CCceEEEcccccccccCCCCCcc-ccCCCC---eEEEeCC-ccEEEEcCCCCCCCC--
Q 038927 68 RNFTTGDTILFEYTNR------TDNVKLVQRREFESCNRRTRPIK-AFNTGS---HSIHLKF-RSHYFRSDFPGHYEA-- 134 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~------~HsV~~V~~~~Y~~C~~~s~pi~-~~~sG~---~~v~L~~-G~~YFICgv~~HC~~-- 134 (198)
.++.+||.+.|..++. .|++..-+ + .+. ....|. ..++.++ |.|||.|+. +|-.
T Consensus 560 I~VP~GdtVrfiLTN~D~veDViHSF~IPs---l--------GIK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~H 626 (638)
T 3sbq_A 560 FTVKQGDEVTVTITNIDQIEDVSHGFVVVN---H--------GVSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALH 626 (638)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEETT---T--------TEEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTC
T ss_pred EEEecCceeEEEEecCCcCCCceeeeEecC---C--------CceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCc
Confidence 3788999999987652 46654311 1 111 122343 2577788 999999986 6654
Q ss_pred -CCeEEEEecC
Q 038927 135 -GQKLEVVTTD 144 (198)
Q Consensus 135 -GmKl~I~V~~ 144 (198)
+|+..|.|.+
T Consensus 627 s~M~G~ViVEP 637 (638)
T 3sbq_A 627 MEMVGRMMVEP 637 (638)
T ss_dssp TTCEEEEEEEC
T ss_pred ccceEEEEEec
Confidence 4999999974
No 48
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=79.25 E-value=5.1 Score=32.16 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=41.0
Q ss_pred CCceEeCCEEEEEEcCC--CCceEEEcccccccccCCCCCccc-cCCCC---eEEEeCC-ccEEEEcCCCCCCC---CCC
Q 038927 67 SRNFTTGDTILFEYTNR--TDNVKLVQRREFESCNRRTRPIKA-FNTGS---HSIHLKF-RSHYFRSDFPGHYE---AGQ 136 (198)
Q Consensus 67 ~~~F~VGDtLvF~Y~~~--~HsV~~V~~~~Y~~C~~~s~pi~~-~~sG~---~~v~L~~-G~~YFICgv~~HC~---~Gm 136 (198)
...+.+|+.+.|..++. .|+... . ++ .++. -..|. ..++.++ |.||+.|+. .|- .+|
T Consensus 94 ~l~VP~G~~Vr~~vTS~DViHsf~I-P--~l--------gik~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M 160 (168)
T 3s8f_B 94 PIEVPQGAEIVFKITSPDVIHGFHV-E--GT--------NINVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNM 160 (168)
T ss_dssp SEEEETTSEEEEEEECSSSCEEEEE-T--TS--------SCEEEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGC
T ss_pred EEEEeCCCeEEEEEecCCceEEEEE-C--CC--------CeEEEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCC
Confidence 34788899999988753 244322 1 11 1111 12232 3677888 999999984 454 469
Q ss_pred eEEEEecC
Q 038927 137 KLEVVTTD 144 (198)
Q Consensus 137 Kl~I~V~~ 144 (198)
+..|.|.+
T Consensus 161 ~g~V~V~e 168 (168)
T 3s8f_B 161 FGTIVVKE 168 (168)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999863
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=61.04 E-value=10 Score=32.30 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=46.7
Q ss_pred CceEeCCEEEEEEcCC-----CCceEEEcccccccccCCCCCccccCCCCe---EEEeCC-ccEEEEcCCCC-----CCC
Q 038927 68 RNFTTGDTILFEYTNR-----TDNVKLVQRREFESCNRRTRPIKAFNTGSH---SIHLKF-RSHYFRSDFPG-----HYE 133 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-----~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~---~v~L~~-G~~YFICgv~~-----HC~ 133 (198)
.+++.||+|++++.+. -|.+..-...+.+. ..++.....|.+ .+++++ |++||-|...+ |=.
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~----~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALG----GGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG----GGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCC----CCceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 4688999999988764 36654322111110 111222344533 677788 99999998764 666
Q ss_pred CCCeEEEEecCC
Q 038927 134 AGQKLEVVTTDG 145 (198)
Q Consensus 134 ~GmKl~I~V~~~ 145 (198)
.||.-.+.|.+.
T Consensus 142 ~Gl~G~~iV~~~ 153 (333)
T 1mzy_A 142 SGMAGCIMVLPR 153 (333)
T ss_dssp TTCEEEEEEECT
T ss_pred CCCEEEEEEccC
Confidence 899999888754
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=59.29 E-value=12 Score=31.94 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=46.6
Q ss_pred CceEeCCEEEEEEcCC-----CCceEEEcccccccccCCCCCccccCCCCe---EEEeCC-ccEEEEcCCCC----CCCC
Q 038927 68 RNFTTGDTILFEYTNR-----TDNVKLVQRREFESCNRRTRPIKAFNTGSH---SIHLKF-RSHYFRSDFPG----HYEA 134 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-----~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~---~v~L~~-G~~YFICgv~~----HC~~ 134 (198)
.+++.||++++++.+. .|++..=... +. +. ..++.....|.+ .+++++ |++||-|...+ |=..
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~-~~--~~-~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGAT-GA--LG-GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSC-SG--GG-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCC-CC--CC-CcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 4678999999888753 4665442111 10 01 112222344543 677788 99999998653 4457
Q ss_pred CCeEEEEecCCC
Q 038927 135 GQKLEVVTTDGS 146 (198)
Q Consensus 135 GmKl~I~V~~~~ 146 (198)
||.-.+.|....
T Consensus 143 Gl~G~liV~~~~ 154 (336)
T 1oe1_A 143 GMSGTLMVLPRD 154 (336)
T ss_dssp TCEEEEEEECTT
T ss_pred CCeEEEEEecCc
Confidence 999999997543
No 51
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=57.32 E-value=3.7 Score=29.69 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.1
Q ss_pred ccCCceEeCCEEEEEEcCCCCceEEE
Q 038927 65 ASSRNFTTGDTILFEYTNRTDNVKLV 90 (198)
Q Consensus 65 As~~~F~VGDtLvF~Y~~~~HsV~~V 90 (198)
+..+..++||.|+|+|... +.++|
T Consensus 73 v~~~~L~~GD~lvF~~~~~--~~f~V 96 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD--RTFYV 96 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS--SEEEE
T ss_pred HHHcCCCCCCEEEEEEcCC--CeEEE
Confidence 4567899999999999853 34555
No 52
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=56.83 E-value=4.5 Score=31.53 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=19.8
Q ss_pred ccCCceEeCCEEEEEEcCCCCceEEE
Q 038927 65 ASSRNFTTGDTILFEYTNRTDNVKLV 90 (198)
Q Consensus 65 As~~~F~VGDtLvF~Y~~~~HsV~~V 90 (198)
+..+.+++||.++|++.....-+++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 55678999999999998643335665
No 53
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=56.83 E-value=13 Score=31.87 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=44.5
Q ss_pred CceEeCCEEEEEEcCC-----CCceEEEcccccccccCCCCCccccCCCCe---EEEeCC-ccEEEEcCCC---CCCCCC
Q 038927 68 RNFTTGDTILFEYTNR-----TDNVKLVQRREFESCNRRTRPIKAFNTGSH---SIHLKF-RSHYFRSDFP---GHYEAG 135 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-----~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~---~v~L~~-G~~YFICgv~---~HC~~G 135 (198)
.+++.||++++++.+. .|++..=--...| . .........|.+ .++.+. |++||-|... .|=..|
T Consensus 72 i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~d---G-~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 72 IRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQG---G-GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG---G-GTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEECCCCCCceeeEeCccccCC---C-CCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 4788999999988654 3555431000111 1 000111234433 566678 9999999752 344679
Q ss_pred CeEEEEecCCC
Q 038927 136 QKLEVVTTDGS 146 (198)
Q Consensus 136 mKl~I~V~~~~ 146 (198)
|.-.|.|....
T Consensus 148 l~G~~iV~~~~ 158 (327)
T 1kbv_A 148 MYGLILVEPKE 158 (327)
T ss_dssp CEEEEEEECTT
T ss_pred eEEEEEEecCC
Confidence 99999998653
No 54
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=49.48 E-value=10 Score=33.54 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=44.6
Q ss_pred CceEeCCEEEEEEcCC-----CCceEEEcccccccccCCCCCccccCCCCe---EEEeCC-ccEEEEcC---CCCCCCCC
Q 038927 68 RNFTTGDTILFEYTNR-----TDNVKLVQRREFESCNRRTRPIKAFNTGSH---SIHLKF-RSHYFRSD---FPGHYEAG 135 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-----~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~---~v~L~~-G~~YFICg---v~~HC~~G 135 (198)
.+++.||++++++.+. .|++..=--...+ . .........|.. .|+.++ |++||-|- ...|=..|
T Consensus 62 i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~d---G-~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 137 (442)
T 2zoo_A 62 IRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPG---G-GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137 (442)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG---G-GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCC---C-CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCc
Confidence 4678899999988654 4555431100111 0 000011233433 567778 99999994 34566689
Q ss_pred CeEEEEecCCC
Q 038927 136 QKLEVVTTDGS 146 (198)
Q Consensus 136 mKl~I~V~~~~ 146 (198)
|...+.|.+..
T Consensus 138 l~G~~iv~~~~ 148 (442)
T 2zoo_A 138 MYGLILVEPKE 148 (442)
T ss_dssp CEEEEEEECTT
T ss_pred cEEEEEEeCCC
Confidence 99999888553
No 55
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=45.27 E-value=15 Score=34.33 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=46.1
Q ss_pred ceEeCCEEEEEEcCC--CCceEEE-cccccccccCCCCCccccCCCCeEEEeCCccEEEEcCCCCCCCCCC-eEEEEec
Q 038927 69 NFTTGDTILFEYTNR--TDNVKLV-QRREFESCNRRTRPIKAFNTGSHSIHLKFRSHYFRSDFPGHYEAGQ-KLEVVTT 143 (198)
Q Consensus 69 ~F~VGDtLvF~Y~~~--~HsV~~V-~~~~Y~~C~~~s~pi~~~~sG~~~v~L~~G~~YFICgv~~HC~~Gm-Kl~I~V~ 143 (198)
..+.|-.|.|.=-.+ ..-++.+ +-.+...|..+.-+...|.=| ....|+.|.|||..+...-|++|- |+.|.|.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (491)
T 3l6w_A 414 VVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG-KMYSVESGDYFMTASTTELCNDNNLRIHVHVD 491 (491)
T ss_pred EeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc-ceEecCCCceEecCChHHHHhCCceeEEEEeC
Confidence 566788888843221 1122222 445667798711111222222 245666699999999999999998 9999884
No 56
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=42.14 E-value=31 Score=29.34 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=46.0
Q ss_pred CceEeCCEEEEEEcCC-----CCceEEEcccccccccCCCCCccccCCCCe---EEEeCC-ccEEEEcCCCC----CCCC
Q 038927 68 RNFTTGDTILFEYTNR-----TDNVKLVQRREFESCNRRTRPIKAFNTGSH---SIHLKF-RSHYFRSDFPG----HYEA 134 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~-----~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~~---~v~L~~-G~~YFICgv~~----HC~~ 134 (198)
.+++.||++++++.+. .|.+..=...+. +. ..++.....|.+ .+++++ |++||-|...+ |=..
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~---~~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGA---LG-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSG---GG-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCC---CC-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 4678999999988764 355543111110 00 112222344433 677788 99999998753 5568
Q ss_pred CCeEEEEecCC
Q 038927 135 GQKLEVVTTDG 145 (198)
Q Consensus 135 GmKl~I~V~~~ 145 (198)
||.-.+.|...
T Consensus 149 Gl~G~~iV~~~ 159 (340)
T 2bw4_A 149 GMNGAIMVLPR 159 (340)
T ss_dssp TCEEEEEEECT
T ss_pred cCEEEEEEccC
Confidence 99998888754
No 57
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=40.65 E-value=11 Score=27.11 Aligned_cols=16 Identities=50% Similarity=0.987 Sum_probs=12.4
Q ss_pred CceEeCCEEEEE-EcCC
Q 038927 68 RNFTTGDTILFE-YTNR 83 (198)
Q Consensus 68 ~~F~VGDtLvF~-Y~~~ 83 (198)
+.|++||.|+|. |.++
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 459999999994 6544
No 58
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=39.46 E-value=21 Score=30.30 Aligned_cols=36 Identities=8% Similarity=-0.154 Sum_probs=29.6
Q ss_pred EEEeCC-ccEEEEcCCCCCC-CCCCeEEEEecCCCCCC
Q 038927 114 SIHLKF-RSHYFRSDFPGHY-EAGQKLEVVTTDGSLPR 149 (198)
Q Consensus 114 ~v~L~~-G~~YFICgv~~HC-~~GmKl~I~V~~~~~Pa 149 (198)
.++.+. |.++|.|....|+ +.||.-.+.|....-|.
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~~~ 323 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDD 323 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCCTT
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCChH
Confidence 566778 9999999988888 89999999998765333
No 59
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=38.50 E-value=46 Score=27.75 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=44.7
Q ss_pred CceEeCCEEEEEEcCC---CCceEEEcccccccccCCCCCc--cccCCCCe---EEEeCC-ccEEEEcCCC---CCCCCC
Q 038927 68 RNFTTGDTILFEYTNR---TDNVKLVQRREFESCNRRTRPI--KAFNTGSH---SIHLKF-RSHYFRSDFP---GHYEAG 135 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~---~HsV~~V~~~~Y~~C~~~s~pi--~~~~sG~~---~v~L~~-G~~YFICgv~---~HC~~G 135 (198)
.+++.||+++.++.+. .|++..=--. ...-+. ...+ .....|.+ .++.++ |++||-|-.. .|=..|
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~-~~~~DG-~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVH-RATMDG-TPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCC-CGGGSC-CTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEecccc-ccccCC-CCCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 4688999999988653 2444321000 000111 0000 11223433 677778 9999999875 355689
Q ss_pred CeEEEEecCCC
Q 038927 136 QKLEVVTTDGS 146 (198)
Q Consensus 136 mKl~I~V~~~~ 146 (198)
|.-.+.|.+..
T Consensus 146 l~G~liV~~~~ 156 (288)
T 3gdc_A 146 LYGGFIVEPKE 156 (288)
T ss_dssp CEEEEEEECSS
T ss_pred CeEEEEEeCCc
Confidence 99999998665
No 60
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=37.97 E-value=25 Score=29.86 Aligned_cols=35 Identities=6% Similarity=-0.156 Sum_probs=29.3
Q ss_pred EEEeCC-ccEEEEcCCCCCC-CCCCeEEEEecCCCCC
Q 038927 114 SIHLKF-RSHYFRSDFPGHY-EAGQKLEVVTTDGSLP 148 (198)
Q Consensus 114 ~v~L~~-G~~YFICgv~~HC-~~GmKl~I~V~~~~~P 148 (198)
.+..+. |.++|.|-...|. +.||.-.+.|....-|
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~~~ 322 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDN 322 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCCCT
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCCCc
Confidence 566677 9999999998999 9999999999875533
No 61
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=33.41 E-value=15 Score=27.63 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=9.9
Q ss_pred CceEeCCEEEE
Q 038927 68 RNFTTGDTILF 78 (198)
Q Consensus 68 ~~F~VGDtLvF 78 (198)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 47899999999
No 62
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=31.97 E-value=7.7 Score=28.06 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=14.2
Q ss_pred CC-ccEEEEcCCCCCCCCCCeEEEEecCCCC
Q 038927 118 KF-RSHYFRSDFPGHYEAGQKLEVVTTDGSL 147 (198)
Q Consensus 118 ~~-G~~YFICgv~~HC~~GmKl~I~V~~~~~ 147 (198)
.+ |.||-.-...++ ..+.++.+.|..++.
T Consensus 85 ~Dsg~Y~C~~~~~~~-~~~~~v~L~V~~~~~ 114 (124)
T 2nms_A 85 TDADTYWCGIEKTGN-DLGVTVQVTIDPAPV 114 (124)
T ss_dssp GGCEEEEEEEEETTE-EEEEEEEEEEECCC-
T ss_pred HHCEEEEEEEEcCCC-CccEEEEEEEeCCCc
Confidence 35 666633222222 345567777776653
No 63
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=28.12 E-value=66 Score=27.46 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=24.9
Q ss_pred EEEeCC-ccEEEEcCCCC--CCC-CCCeEEEEecCCC
Q 038927 114 SIHLKF-RSHYFRSDFPG--HYE-AGQKLEVVTTDGS 146 (198)
Q Consensus 114 ~v~L~~-G~~YFICgv~~--HC~-~GmKl~I~V~~~~ 146 (198)
.|++++ |++||-|.... |=. .||--.+.|.+..
T Consensus 92 ~f~~~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~ 128 (339)
T 2zwn_A 92 KFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQ 128 (339)
T ss_dssp EEECCSCEEEEEECCSSHHHHTTTSCCEEEEEEECSS
T ss_pred EEECCCCEEEEEEecCCchhhhhcCCceEeEEecCCC
Confidence 677888 99999997643 444 7998888887543
No 64
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=26.41 E-value=69 Score=22.16 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCc--cccCCCCeEEEeC
Q 038927 67 SRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPI--KAFNTGSHSIHLK 118 (198)
Q Consensus 67 ~~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi--~~~~sG~~~v~L~ 118 (198)
..+|.+||++.=+| +|.+.-.++.-.+++ . ++++ -.|.+|. ..+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s-~~~~Y~V~fKdgT-~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---D-ASHLYTVKYKDGT-ELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---T-TTTEEEEEETTSC-EEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---c-CCceEEEEecCCC-EEeec
Confidence 35789999999999 777777776444455 3 5565 3467754 44554
No 65
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=26.30 E-value=99 Score=28.31 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=47.7
Q ss_pred CceEeCCEEEEEEcCCCC----ceEE--Ecc---ccccc-ccCCCCCccccCCCCe---EEEeC-C-ccEEEEcCCCCCC
Q 038927 68 RNFTTGDTILFEYTNRTD----NVKL--VQR---REFES-CNRRTRPIKAFNTGSH---SIHLK-F-RSHYFRSDFPGHY 132 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~~H----sV~~--V~~---~~Y~~-C~~~s~pi~~~~sG~~---~v~L~-~-G~~YFICgv~~HC 132 (198)
.+++.||+|+.++.+... ++.- +.+ ...|. -.....+| ..|.+ .++++ . |++||=|-...|=
T Consensus 36 i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI---~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~ 112 (534)
T 1zpu_A 36 ITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPI---APGSTMLYNFTVDYNVGTYWYHSHTDGQY 112 (534)
T ss_dssp EEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECSSCCEEEEEECCSSSGG
T ss_pred EEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCc---CCCCeEEEEEEeCccceeEEEEEcCcccc
Confidence 478899999999986432 2221 110 01111 00000112 23432 78888 7 9999999988887
Q ss_pred CCCCeEEEEecCCCC
Q 038927 133 EAGQKLEVVTTDGSL 147 (198)
Q Consensus 133 ~~GmKl~I~V~~~~~ 147 (198)
..||.-.+.|.....
T Consensus 113 ~~Gl~G~liV~~~~~ 127 (534)
T 1zpu_A 113 EDGMKGLFIIKDDSF 127 (534)
T ss_dssp GGTCEEEEEEECTTC
T ss_pred cCcceeeEEeCCCCC
Confidence 889999999987653
No 66
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=25.85 E-value=18 Score=27.26 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=10.3
Q ss_pred CceEeCCEEEEE
Q 038927 68 RNFTTGDTILFE 79 (198)
Q Consensus 68 ~~F~VGDtLvF~ 79 (198)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 468999999994
No 67
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.04 E-value=98 Score=21.49 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCceEeCCEEEEEEcCCCCceEEEcccccccccCCCCCc--cccCCCCeEEEeCC
Q 038927 67 SRNFTTGDTILFEYTNRTDNVKLVQRREFESCNRRTRPI--KAFNTGSHSIHLKF 119 (198)
Q Consensus 67 ~~~F~VGDtLvF~Y~~~~HsV~~V~~~~Y~~C~~~s~pi--~~~~sG~~~v~L~~ 119 (198)
..+|.+||++.=+|. +.+.-+++.-..++ . ++++ -.|.+|. ..+|..
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit---s-~~~~Y~VkfKdgT-~e~L~~ 58 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD---S-TSQLYTVKYKDGT-ELELKE 58 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE---T-TTTEEEEECTTSC-EEEEET
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec---c-CCceEEEEecCCC-EEEech
Confidence 357899999999998 77777766444454 3 5565 3477754 455543
No 68
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=23.18 E-value=64 Score=26.66 Aligned_cols=28 Identities=11% Similarity=-0.057 Sum_probs=22.5
Q ss_pred EEEeCC-ccEEEEcCCCCCCCC---CCeEEEEec
Q 038927 114 SIHLKF-RSHYFRSDFPGHYEA---GQKLEVVTT 143 (198)
Q Consensus 114 ~v~L~~-G~~YFICgv~~HC~~---GmKl~I~V~ 143 (198)
.++.++ |.||..|+. .|-. .|++.|.|.
T Consensus 84 ~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 84 HLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 466678 999999974 7765 499999887
No 69
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.49 E-value=37 Score=23.63 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=13.7
Q ss_pred CceEeCCEEEEEEcCC
Q 038927 68 RNFTTGDTILFEYTNR 83 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~ 83 (198)
..+++||.+.|.+...
T Consensus 52 ~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEe
Confidence 5799999999999753
No 70
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=22.35 E-value=69 Score=27.82 Aligned_cols=30 Identities=3% Similarity=-0.173 Sum_probs=24.0
Q ss_pred EEEeCC-ccEEEEcCCCCCCCC---CCeEEEEecCC
Q 038927 114 SIHLKF-RSHYFRSDFPGHYEA---GQKLEVVTTDG 145 (198)
Q Consensus 114 ~v~L~~-G~~YFICgv~~HC~~---GmKl~I~V~~~ 145 (198)
.++.++ |.||..|+. .|-. .|++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 577888 999999974 6765 49999998753
No 71
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=21.94 E-value=12 Score=31.67 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCceEeCCEEEEEEcCCCC--ceEEE--cccccccccC-CCCCccccCCC--CeEEEeCC-ccEEEEcCCCCCCCCCCeE
Q 038927 67 SRNFTTGDTILFEYTNRTD--NVKLV--QRREFESCNR-RTRPIKAFNTG--SHSIHLKF-RSHYFRSDFPGHYEAGQKL 138 (198)
Q Consensus 67 ~~~F~VGDtLvF~Y~~~~H--sV~~V--~~~~Y~~C~~-~s~pi~~~~sG--~~~v~L~~-G~~YFICgv~~HC~~GmKl 138 (198)
..+++.||+++|..-+... ....+ ....++. +. ..+.+.+.... .-.++.++ |.++|-|-...|-+.||..
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-dG~~~dtv~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~~ 294 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-NHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQA 294 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEE-TTEECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTCBC
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee-CCEEcceEEECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCeE
Confidence 3467789999888764321 22211 1111111 00 01222222222 22566677 9999999999999999999
Q ss_pred EEEecCC
Q 038927 139 EVVTTDG 145 (198)
Q Consensus 139 ~I~V~~~ 145 (198)
.+.|.+.
T Consensus 295 ~~~V~~~ 301 (306)
T 1sdd_A 295 YIDIKNC 301 (306)
T ss_dssp CC-----
T ss_pred EEEEecC
Confidence 8888754
No 72
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=21.92 E-value=39 Score=24.03 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=15.4
Q ss_pred cccCCceEeCCEEEEEEcCC
Q 038927 64 WASSRNFTTGDTILFEYTNR 83 (198)
Q Consensus 64 WAs~~~F~VGDtLvF~Y~~~ 83 (198)
.+.-..+++||.+.|.+...
T Consensus 56 ~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 56 QTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp TCEECCCCTTCEEEEEEEEE
T ss_pred hhhhhcCCCCCEEEEEEEEe
Confidence 33346799999999999753
No 73
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=21.40 E-value=4e+02 Score=23.06 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=39.6
Q ss_pred CceEeCCEEEEEEcCC--CCceEEEcccccccccCCCCCccccCCCC---eEEEeCC-ccEEEEcCCCCCCCC---CCeE
Q 038927 68 RNFTTGDTILFEYTNR--TDNVKLVQRREFESCNRRTRPIKAFNTGS---HSIHLKF-RSHYFRSDFPGHYEA---GQKL 138 (198)
Q Consensus 68 ~~F~VGDtLvF~Y~~~--~HsV~~V~~~~Y~~C~~~s~pi~~~~sG~---~~v~L~~-G~~YFICgv~~HC~~---GmKl 138 (198)
..+-+|..+.|.-++. .|+-.. .+-.- .-+. -.|. ..++.++ |.||..|+. .|-. .|++
T Consensus 153 l~lP~g~~V~~~lTS~DViHsf~I-P~lg~-k~Da--------iPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~ 220 (315)
T 1fft_B 153 IAFPANTPVYFKVTSNSVMNSFFI-PRLGS-QIYA--------MAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKF 220 (315)
T ss_dssp CCCCSSSEEEEEECBSSSCEEEEE-GGGTE-EEEE--------CBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCCE
T ss_pred EEEeCCCEEEEEEEeCCccceeee-cccCc-EEee--------cCCcceeeEEecCCCeEEEEeccc--cchhhHHhccc
Confidence 4677899999998752 233222 11110 0111 1222 2577788 999999974 7765 4999
Q ss_pred EEEec
Q 038927 139 EVVTT 143 (198)
Q Consensus 139 ~I~V~ 143 (198)
.|.|.
T Consensus 221 ~v~vv 225 (315)
T 1fft_B 221 KAIAT 225 (315)
T ss_dssp ECCBC
T ss_pred eEEEe
Confidence 99887
No 74
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=20.99 E-value=77 Score=26.79 Aligned_cols=29 Identities=3% Similarity=-0.077 Sum_probs=23.7
Q ss_pred EEEeCC-ccEEEEcCCCCCCCCC---CeEEEEecC
Q 038927 114 SIHLKF-RSHYFRSDFPGHYEAG---QKLEVVTTD 144 (198)
Q Consensus 114 ~v~L~~-G~~YFICgv~~HC~~G---mKl~I~V~~ 144 (198)
.++.++ |.||..|+ .-|-.| |++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cs--e~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCS--ELCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCC--SCCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEECh--HhcccCcccCeEEEEEEc
Confidence 577888 99999997 478765 999888865
No 75
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=20.60 E-value=1.4 Score=25.25 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=13.9
Q ss_pred CCceEeCCEEEEEEcCCCC
Q 038927 67 SRNFTTGDTILFEYTNRTD 85 (198)
Q Consensus 67 ~~~F~VGDtLvF~Y~~~~H 85 (198)
++.|.|.|.|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4689999999999876544
No 76
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=20.28 E-value=35 Score=28.52 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=26.3
Q ss_pred EEEeCC-ccEEEEcCCCCCCCCCCeEEEEecC
Q 038927 114 SIHLKF-RSHYFRSDFPGHYEAGQKLEVVTTD 144 (198)
Q Consensus 114 ~v~L~~-G~~YFICgv~~HC~~GmKl~I~V~~ 144 (198)
.++.+. |.+.|.|-+..|=+.||.-.++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 344567 9999999999999999999998864
No 77
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.05 E-value=48 Score=23.26 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=16.3
Q ss_pred ccccCCceEeCCEEEEEEcCC
Q 038927 63 KWASSRNFTTGDTILFEYTNR 83 (198)
Q Consensus 63 ~WAs~~~F~VGDtLvF~Y~~~ 83 (198)
+.+.-..+++||.+.|.+...
T Consensus 41 ~~~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 41 PAGLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp TTCCCSSCSTTCEEEEEEEEE
T ss_pred ChhHhhcCCCCCEEEEEEEEC
Confidence 344456899999999999753
Done!