BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038929
         (326 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P61650|ORN_CORDI Oligoribonuclease OS=Corynebacterium diphtheriae (strain ATCC
           700971 / NCTC 13129 / Biotype gravis) GN=orn PE=3 SV=1
          Length = 210

 Score = 33.1 bits (74), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 114 ATAILDDPANAFFALLSQHCIPLHSFHYVYNSLVTSASFDRSS 156
           +T  L +  +A  AL++QHC P H      NS+ T  SF R+ 
Sbjct: 82  STVSLQEAEDAVLALIAQHCDPEHPAPLAGNSIATDRSFIRAQ 124


>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens
           GN=RGPD8 PE=1 SV=2
          Length = 1765

 Score = 32.3 bits (72), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 54  PKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSK 91
           P  +  + P YN      P ANVT  +GS+NT F S+K
Sbjct: 873 PSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTK 910


>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens
           GN=RGPD5 PE=1 SV=3
          Length = 1765

 Score = 32.3 bits (72), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 54  PKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSK 91
           P  +  + P YN      P ANVT  +GS+NT F S+K
Sbjct: 873 PSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTK 910


>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens
           GN=RGPD4 PE=2 SV=3
          Length = 1758

 Score = 32.3 bits (72), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 54  PKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSK 91
           P  +  + P YN      P ANVT  +GS+NT F S+K
Sbjct: 874 PSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTK 911


>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens
           GN=RGPD2 PE=2 SV=1
          Length = 1756

 Score = 32.3 bits (72), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 54  PKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSK 91
           P  +  + P YN      P ANVT  +GS+NT F S+K
Sbjct: 866 PSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTK 903


>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens
           GN=RGPD3 PE=2 SV=2
          Length = 1758

 Score = 32.3 bits (72), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 54  PKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSK 91
           P  +  + P YN      P ANVT  +GS+NT F S+K
Sbjct: 874 PSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTK 911


>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens
           GN=RGPD1 PE=2 SV=1
          Length = 1748

 Score = 32.3 bits (72), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 54  PKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSK 91
           P  +  + P YN      P ANVT  +GS+NT F S+K
Sbjct: 858 PSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTK 895


>sp|Q8FMX9|ORN_COREF Oligoribonuclease OS=Corynebacterium efficiens (strain DSM 44549 /
           YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) GN=orn PE=3
           SV=1
          Length = 221

 Score = 32.0 bits (71), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 114 ATAILDDPANAFFALLSQHCIPLHSFHYVYNSLVTSASFDRSS 156
           +T  L D  +A  AL+ +HC P H      NS+ T  +F R  
Sbjct: 91  STVSLKDAEDAVLALIEEHCDPAHPAPLAGNSIATDRAFIREQ 133


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,796,677
Number of Sequences: 539616
Number of extensions: 4977005
Number of successful extensions: 10203
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10193
Number of HSP's gapped (non-prelim): 12
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)