Query 038929
Match_columns 326
No_of_seqs 130 out of 653
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 4E-53 8.6E-58 406.9 21.0 272 27-325 74-366 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 1.7E-50 3.8E-55 368.1 7.7 235 33-293 1-244 (244)
3 KOG0799 Branching enzyme [Carb 100.0 6.9E-32 1.5E-36 263.3 12.0 275 25-321 97-387 (439)
4 TIGR03469 HonB hopene-associat 72.8 40 0.00087 32.6 10.8 117 27-149 36-161 (384)
5 TIGR03472 HpnI hopanoid biosyn 50.3 94 0.002 29.8 8.7 104 28-145 38-147 (373)
6 COG1216 Predicted glycosyltran 48.4 53 0.0012 30.5 6.5 108 30-151 2-114 (305)
7 PRK14716 bacteriophage N4 adso 46.4 92 0.002 31.6 8.1 106 29-139 64-175 (504)
8 cd06439 CESA_like_1 CESA_like_ 43.7 64 0.0014 28.4 6.0 108 24-146 22-131 (251)
9 PRK11204 N-glycosyltransferase 43.0 1.4E+02 0.003 28.9 8.8 110 29-151 52-164 (420)
10 cd02511 Beta4Glucosyltransfera 41.7 89 0.0019 27.4 6.6 99 32-151 1-101 (229)
11 cd06421 CESA_CelA_like CESA_Ce 36.0 1.3E+02 0.0029 25.7 6.8 104 32-151 2-114 (234)
12 cd04184 GT2_RfbC_Mx_like Myxoc 34.9 1.1E+02 0.0024 25.6 6.0 108 31-151 1-113 (202)
13 cd04192 GT_2_like_e Subfamily 34.9 2E+02 0.0044 24.4 7.7 101 36-147 2-105 (229)
14 cd02525 Succinoglycan_BP_ExoA 33.8 1.6E+02 0.0036 25.3 7.0 102 32-147 1-104 (249)
15 cd02520 Glucosylceramide_synth 32.3 2.2E+02 0.0047 24.0 7.4 104 32-147 2-109 (196)
16 PF07747 MTH865: MTH865-like f 31.3 26 0.00057 25.9 1.1 23 129-151 11-33 (75)
17 cd02515 Glyco_transf_6 Glycosy 31.2 2.6E+02 0.0057 25.9 7.8 101 28-134 31-135 (271)
18 PF06718 DUF1203: Protein of u 30.6 2.3E+02 0.005 22.8 6.6 32 98-130 74-105 (117)
19 PRK14583 hmsR N-glycosyltransf 30.4 1.7E+02 0.0036 28.9 7.1 109 30-151 74-185 (444)
20 PF00535 Glycos_transf_2: Glyc 24.6 1.7E+02 0.0037 22.9 5.1 103 35-151 2-108 (169)
21 COG4746 Uncharacterized protei 24.4 60 0.0013 24.0 2.0 39 95-148 38-76 (80)
22 PF12610 SOCS: Suppressor of c 21.6 30 0.00065 24.4 -0.1 9 131-139 48-56 (60)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=4e-53 Score=406.85 Aligned_cols=272 Identities=16% Similarity=0.142 Sum_probs=194.2
Q ss_pred CCCCceEEEEEEeC-CCC-CchHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCCC--------CccccCCCccccc-C
Q 038929 27 PNPKLKIAFLFLTN-SDL-HFSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPRG--------STNTVFDSSKFIP-S 95 (326)
Q Consensus 27 ~~~~~kiAyLilah-~~~-~~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~~--------~~~~~f~~v~~i~-r 95 (326)
+..++||||||++| ++. +++||++++++ +.+.||||+|+|++..+... ....+++||+++. +
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aLYh-------prN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~ 146 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRALYH-------PRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKA 146 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHhcC-------CCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecc
Confidence 33489999999999 564 47888888874 34569999999998652111 0113458999988 8
Q ss_pred ccccCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHH-HHHHHhcCCCccccccccc-cccccccccccee
Q 038929 96 KITFRASPTLVSAARRLLATAILDDPANAFFALLSQHCIPLHSFHY-VYNSLVTSASFDRSSSAAA-YGNIRLSHKSFIE 173 (326)
Q Consensus 96 ~~v~WG~~Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~-i~~~l~~~~~~~~~~~~~~-~~~~~~~~~~f~~ 173 (326)
..|.|||+|+|+|||++|+.+|+...+|+|||||||+||||+++++ |+.|+..+.+.+|...... ......+.+.++
T Consensus 147 ~~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i- 225 (421)
T PLN03183 147 NLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLI- 225 (421)
T ss_pred eeeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEE-
Confidence 8899999999999999999999976789999999999999999999 5778888888444322111 111111222222
Q ss_pred eeecCccccc--chhhccccccCCCCCCCcceecccceEecHHHHHHHhhch----HHHHHhhccccCCCCCCCCcchHH
Q 038929 174 VISKDPRLWK--RYVARGRYAMLPEVPFDDFRVGSQFFILTRKHAVVVVKDR----ALWRKFRMPCYRADECYPEEHYFP 247 (326)
Q Consensus 174 ~~~~~~~~~~--r~~~~~~~~~~p~~~~~~~~~GSqW~~Ltr~~a~~il~~~----~~~~~f~~~~~~~~~~~pDE~ff~ 247 (326)
.+.. ..... ........+.+|. ..++|+|||||+|||++|+||+... .....|.+. +.| |||+|||
T Consensus 226 ~~pg-l~~~~ks~~~~~~~~R~~P~--~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~----t~~-pdE~fFq 297 (421)
T PLN03183 226 IDPG-LYSTNKSDIYWVTPRRSLPT--AFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTN----FVS-SPEGYFH 297 (421)
T ss_pred ecCc-eeecccchhhhhhhhccCCc--cccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhc----CCC-CchHHHH
Confidence 1110 00000 0000011122332 4689999999999999999999622 333444431 244 9999999
Q ss_pred hHhhcCC--CCCCcccceEEEeeCCCCCCCCcccCCCCCCHHHHHHHHhcCCCCCceEEecCCCCCchhHHhhhhhhhcC
Q 038929 248 TLLSMQN--PDGLTGYTLTRVNWTGTTNGHPYTYKPREVSPELIYKLRESNYSESYLFARKFSPDCLGPLMKITDSVIFR 325 (326)
Q Consensus 248 TlL~~~~--~~~~~~~~lryidW~~~~~~~P~~~~~~Dlt~~~l~~l~~~~~~s~~lFARKfd~~~~~~ll~~l~~~~~~ 325 (326)
|+++|+. .+++.+.++|||+|.+++..||++ ++.+|+++|.+ |+++||||||. ++.+|+.||..|.+
T Consensus 298 TVl~NS~~f~~t~vn~nLRyI~W~~~~~~~P~~-----l~~~D~~~l~~----S~~lFARKFd~--d~~vl~~Id~~ll~ 366 (421)
T PLN03183 298 TVICNVPEFAKTAVNHDLHYISWDNPPKQHPHT-----LSLNDTEKMIA----SGAAFARKFRR--DDPVLDKIDKELLG 366 (421)
T ss_pred HHHhhcccccccccCCceeEEecCCCCCCCCcc-----cCHHHHHHHHh----CCCccccCCCC--ChHHHHHHHHHHhC
Confidence 9998865 356778899999999855569999 56666799999 79999999996 57899999998754
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.7e-50 Score=368.06 Aligned_cols=235 Identities=26% Similarity=0.349 Sum_probs=145.2
Q ss_pred EEEEEEeCC-CCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCC--CCccccCCCccccc-CccccCCCchHHH
Q 038929 33 IAFLFLTNS-DLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPR--GSTNTVFDSSKFIP-SKITFRASPTLVS 107 (326)
Q Consensus 33 iAyLilah~-~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~--~~~~~~f~~v~~i~-r~~v~WG~~Slv~ 107 (326)
|||||+||+ +++ +++|++.+.. +...||||||+|++..... +.....++||++++ |++|.|||+|+|+
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~-------~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~ 73 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYH-------PDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVE 73 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH---------TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcC-------CCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHH
Confidence 799999998 665 4666666642 3446889999998654322 11124457999999 9999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHHhcCCC-cccccccccccccccccccceeeeecCcc-cccch
Q 038929 108 AARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNSLVTSAS-FDRSSSAAAYGNIRLSHKSFIEVISKDPR-LWKRY 185 (326)
Q Consensus 108 A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~r~ 185 (326)
|+|.||++|++.+++|+|||||||+||||+|+++|.+||+.+++ .+ |++....... ..+||
T Consensus 74 A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~-----------------f~~~~~~~~~~~~~r~ 136 (244)
T PF02485_consen 74 ATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNN-----------------FIESFSDEDPRESGRY 136 (244)
T ss_dssp HHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B--------------------BEE--GGGG-HHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCc-----------------ceecccccccchhhcc
Confidence 99999999999447899999999999999999999999999965 32 2222221110 01333
Q ss_pred hhccccccCCCCCCCcceecccceEecHHHHHHHhhchHHHHHhhccccCCCCCCCCcchHHhHhhcCC--CCCCcccce
Q 038929 186 VARGRYAMLPEVPFDDFRVGSQFFILTRKHAVVVVKDRALWRKFRMPCYRADECYPEEHYFPTLLSMQN--PDGLTGYTL 263 (326)
Q Consensus 186 ~~~~~~~~~p~~~~~~~~~GSqW~~Ltr~~a~~il~~~~~~~~f~~~~~~~~~~~pDE~ff~TlL~~~~--~~~~~~~~l 263 (326)
.........+.++..++|+|||||+|||++|+||+++....+.|+.+++. +++|||+||||||.|++ +.++.++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~--~~~pDE~ffqTll~n~~~~~~~~~~~~~ 214 (244)
T PF02485_consen 137 NPRIYDPFRPFFRKRTLYKGSQWFSLTRDFVEYILDDPNYRPKLKKYFRF--SLCPDESFFQTLLNNSGHFKDTIVNRNL 214 (244)
T ss_dssp HEEEETTEEEEEEEE--EEE-S--EEEHHHHHHHHH-HHHHHHHHHHT-T--SSSGGGTHHHHH--SSGGG-B-TTTSSS
T ss_pred eeeeeeecccccccccccccceeeEeeHHHHHHhhhhHHHHHHHHHhhcC--ccCcchhhHHHhhcccchhcccccCCCE
Confidence 32211111121222378999999999999999999887777777766532 45599999999997762 357888899
Q ss_pred EEEeeCCCCCCCCcccCCCCCCHHHHHHHH
Q 038929 264 TRVNWTGTTNGHPYTYKPREVSPELIYKLR 293 (326)
Q Consensus 264 ryidW~~~~~~~P~~~~~~Dlt~~~l~~l~ 293 (326)
|||+|++.+++||++|++.|++.+|+++|+
T Consensus 215 r~i~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 215 RYIDWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp EEE-BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred EEEECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 999999447899999999999999998874
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.9e-32 Score=263.34 Aligned_cols=275 Identities=17% Similarity=0.156 Sum_probs=180.1
Q ss_pred CCCCCCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCC--CCccccCCCccccc-CccccC
Q 038929 25 SSPNPKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPR--GSTNTVFDSSKFIP-SKITFR 100 (326)
Q Consensus 25 ~~~~~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~--~~~~~~f~~v~~i~-r~~v~W 100 (326)
+.+.+..=+||+.++|++.+ +++++++... +.+.++||+|++++..+.. +.++++|+||++++ +..|.|
T Consensus 97 s~~~~~~~~a~~~~v~kd~~~verll~aiYh-------PqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~ 169 (439)
T KOG0799|consen 97 SKELKPFPAAFLRVVYKDYEQVERLLQAIYH-------PQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTY 169 (439)
T ss_pred cccccccceEEEEeecccHHHHHHHHHHHhC-------CcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceec
Confidence 44455556788888899976 6777777663 3334679999999877542 23468899999998 999999
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHHhcCCCcccccccccccccccccccceeeeecCcc
Q 038929 101 ASPTLVSAARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNSLVTSASFDRSSSAAAYGNIRLSHKSFIEVISKDPR 180 (326)
Q Consensus 101 G~~Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 180 (326)
||.|+++|.++||+.+++...+|+||++|||+||||+|+.||...|+..+|.++.......+....+..... ..+
T Consensus 170 ~G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~-~~~---- 244 (439)
T KOG0799|consen 170 GGHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWD-IID---- 244 (439)
T ss_pred CCchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCc-ccc----
Confidence 999999999999999999856799999999999999999999999999888333211100000000000000 000
Q ss_pred cccchhhccccccCCCCC-CCcceecccceEecHHHHHHHhhchHHHHHhhccccCCCCCCCCcchHHhHhhcC-CCCCC
Q 038929 181 LWKRYVARGRYAMLPEVP-FDDFRVGSQFFILTRKHAVVVVKDRALWRKFRMPCYRADECYPEEHYFPTLLSMQ-NPDGL 258 (326)
Q Consensus 181 ~~~r~~~~~~~~~~p~~~-~~~~~~GSqW~~Ltr~~a~~il~~~~~~~~f~~~~~~~~~~~pDE~ff~TlL~~~-~~~~~ 258 (326)
.+ |.........+.+| ...+++||.|++|+|++|+|++........+ .+++ .+..|||+||+|+++|. ..++.
T Consensus 245 -~~-~~~~~s~~~~~~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~~~ll-~~~~--~t~~~dE~f~~Tl~~n~~~~~g~ 319 (439)
T KOG0799|consen 245 -LK-YFRNKSPLPWVILPTALKLFKGSAWVSLSRAFVEYLISGNLPRTLL-MYYN--NTYSPDEGFFHTLQCNPFGMPGV 319 (439)
T ss_pred -cc-hheecCCCccccCCCceEEEecceeEEEeHHHHHHHhcCccHHHHH-HHHh--CccCcchhhhHhhhccccCCCCc
Confidence 00 11111001111134 5789999999999999999999875322222 2222 25569999999999887 22333
Q ss_pred cccc--eEEEeeCCC----CCCCCcccCCCCC----CHHHHHHHHhcCCCCCceEEecCCCCCchhHHhhhhh
Q 038929 259 TGYT--LTRVNWTGT----TNGHPYTYKPREV----SPELIYKLRESNYSESYLFARKFSPDCLGPLMKITDS 321 (326)
Q Consensus 259 ~~~~--lryidW~~~----~~~~P~~~~~~Dl----t~~~l~~l~~~~~~s~~lFARKfd~~~~~~ll~~l~~ 321 (326)
..+ +|++.|... .+.||..+...|. ..+++..+++ .+.++|-||....+..+++-..+
T Consensus 320 -~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k----~~~l~~nkvl~~~d~~~i~c~~~ 387 (439)
T KOG0799|consen 320 -FNDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARK----FPHLVANKVLDKFDPELIGCLAE 387 (439)
T ss_pred -ccchhhcceecccccccccccCCcccccccceeeeecchhHHHhh----CchhhcccchhccCHHHHhhhhh
Confidence 334 999999872 2346666555443 2222355555 46666666666666666554443
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=72.78 E-value=40 Score=32.57 Aligned_cols=117 Identities=6% Similarity=0.010 Sum_probs=65.4
Q ss_pred CCCCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCC--CCccccCC---Cccccc--Cccc
Q 038929 27 PNPKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPR--GSTNTVFD---SSKFIP--SKIT 98 (326)
Q Consensus 27 ~~~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~--~~~~~~f~---~v~~i~--r~~v 98 (326)
+...+++..+|-++++.+ +.++++.+... .+. +.+.|+| ||-.|...... ......+| +++++. ..+.
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q-~yp--~~~eIIV-VDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~ 111 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQ-DYP--GKLHVIL-VDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhC-CCC--CceEEEE-EeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCC
Confidence 345678999999999876 78899999865 441 1355554 45444322000 00001112 456665 2344
Q ss_pred cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCCh-HHHHHHHhcC
Q 038929 99 FRASPTLVSAARRLLATAILDDPANAFFALLSQHCIPLHSF-HYVYNSLVTS 149 (326)
Q Consensus 99 ~WG~~Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~-~~i~~~l~~~ 149 (326)
.|+| ...|.-.+++.|-+.+++.+|++++-..+.|-... +.+.+.+.++
T Consensus 112 g~~G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~ 161 (384)
T TIGR03469 112 GWSG--KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAE 161 (384)
T ss_pred CCcc--hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 5654 34566666777654433468888888877763222 4444444443
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=50.25 E-value=94 Score=29.81 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=57.9
Q ss_pred CCCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcc-cC-CCCccccCCC--ccccc-CccccCC
Q 038929 28 NPKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVT-FP-RGSTNTVFDS--SKFIP-SKITFRA 101 (326)
Q Consensus 28 ~~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~-~~-~~~~~~~f~~--v~~i~-r~~v~WG 101 (326)
.+.+++..+|-+|++.+ +.+.++.+... .+ +.+.|.| +|..++.. .. .+.....+|+ ++++. ..+..|+
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q-~Y---p~~EIiv-vdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~ 112 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQ-DY---PGFQMLF-GVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPN 112 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhc-CC---CCeEEEE-EeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCC
Confidence 44667999999998865 78889999876 66 5678877 54433322 10 0011122244 34443 2333443
Q ss_pred CchHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHH
Q 038929 102 SPTLVSAARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNS 145 (326)
Q Consensus 102 ~~Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~ 145 (326)
+ -+.+..++++.| +.++++++-..|.| +.+.+.+-
T Consensus 113 ~--K~~~l~~~~~~a-----~ge~i~~~DaD~~~--~p~~L~~l 147 (373)
T TIGR03472 113 R--KVSNLINMLPHA-----RHDILVIADSDISV--GPDYLRQV 147 (373)
T ss_pred h--HHHHHHHHHHhc-----cCCEEEEECCCCCc--ChhHHHHH
Confidence 2 233333444433 46778777777666 55555544
No 6
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=48.41 E-value=53 Score=30.50 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=64.5
Q ss_pred CceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCCCCcccc-CCCccccc-CccccCCCchHH
Q 038929 30 KLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPRGSTNTV-FDSSKFIP-SKITFRASPTLV 106 (326)
Q Consensus 30 ~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~~~~~~~-f~~v~~i~-r~~v~WG~~Slv 106 (326)
+++++.+|++|++.+ +...++.+... .+ .. ...|=+|..+....... .... +++|++++ ..+..||+---
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~-~~---~~-~~iv~vDn~s~d~~~~~-~~~~~~~~v~~i~~~~NlG~agg~n- 74 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQ-TY---PD-DVIVVVDNGSTDGSLEA-LKARFFPNVRLIENGENLGFAGGFN- 74 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcC-CC---CC-cEEEEccCCCCCCCHHH-HHhhcCCcEEEEEcCCCccchhhhh-
Confidence 578999999999875 67777777654 32 21 12234676655442111 1121 47999998 78888776433
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCcCC--CChHHHHHHHhcCCC
Q 038929 107 SAARRLLATAILDDPANAFFALLSQHCIPL--HSFHYVYNSLVTSAS 151 (326)
Q Consensus 107 ~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL--~s~~~i~~~l~~~~~ 151 (326)
.+++.|+..+ ++ ++++--.|.++ -..+++.+.++..+.
T Consensus 75 ----~g~~~a~~~~--~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~ 114 (305)
T COG1216 75 ----RGIKYALAKG--DD-YVLLLNPDTVVEPDLLEELLKAAEEDPA 114 (305)
T ss_pred ----HHHHHHhcCC--Cc-EEEEEcCCeeeChhHHHHHHHHHHhCCC
Confidence 6888888752 33 55555666444 334455555555544
No 7
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=46.37 E-value=92 Score=31.63 Aligned_cols=106 Identities=9% Similarity=0.076 Sum_probs=61.9
Q ss_pred CCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCcccccCccccCCCchHH
Q 038929 29 PKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIPSKITFRASPTLV 106 (326)
Q Consensus 29 ~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~r~~v~WG~~Slv 106 (326)
+.++++.||-||++.. +.++++.++..+++ +.+.|+|=.|.+.+.... .......+|+++.+. ... =|..+-.
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY---~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv-~~~-~gp~~Ka 138 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLATLDY---ENYRIFVGTYPNDPATLREVDRLAARYPRVHLVI-VPH-DGPTSKA 138 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHcCCC---CCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEE-eCC-CCCCCHH
Confidence 3678999999999976 68888876544356 678888877765543211 011112246666443 111 1444555
Q ss_pred HHHHHHHHHHh--h--cCCCCcEEEEecCCCcCCCCh
Q 038929 107 SAARRLLATAI--L--DDPANAFFALLSQHCIPLHSF 139 (326)
Q Consensus 107 ~A~l~ll~~Al--~--~~~~~~~f~lLSG~d~PL~s~ 139 (326)
.|.=.+++.+. + .+.++++++++-..|+|=...
T Consensus 139 ~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~ 175 (504)
T PRK14716 139 DCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLE 175 (504)
T ss_pred HHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccH
Confidence 55544555442 2 223578888888777765444
No 8
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=43.69 E-value=64 Score=28.38 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=64.2
Q ss_pred CCCCCCCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCcccccCccccCC
Q 038929 24 LSSPNPKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIPSKITFRA 101 (326)
Q Consensus 24 ~~~~~~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~r~~v~WG 101 (326)
++....+++++.+|.+|++.. +.++++.+... .. ..+.+.|+|..|...+.... ...... .+++++.. ...
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q-~~-~~~~~eiivvdd~s~d~t~~~~~~~~~--~~v~~i~~--~~~- 94 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLAL-DY-PRDRLEIIVVSDGSTDGTAEIAREYAD--KGVKLLRF--PER- 94 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhC-cC-CCCcEEEEEEECCCCccHHHHHHHHhh--CcEEEEEc--CCC-
Confidence 455666889999999999875 67788887754 33 11236788888876653310 000001 13444431 111
Q ss_pred CchHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHH
Q 038929 102 SPTLVSAARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNSL 146 (326)
Q Consensus 102 ~~Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l 146 (326)
.+...|--.+++.| ..+|++++-+.|+|- .+.+.+.+
T Consensus 95 -~g~~~a~n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~ 131 (251)
T cd06439 95 -RGKAAALNRALALA-----TGEIVVFTDANALLD--PDALRLLV 131 (251)
T ss_pred -CChHHHHHHHHHHc-----CCCEEEEEccccCcC--HHHHHHHH
Confidence 23455655565554 238999999999995 45555544
No 9
>PRK11204 N-glycosyltransferase; Provisional
Probab=43.05 E-value=1.4e+02 Score=28.87 Aligned_cols=110 Identities=10% Similarity=0.092 Sum_probs=61.2
Q ss_pred CCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCcccccCccccCCCchHH
Q 038929 29 PKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIPSKITFRASPTLV 106 (326)
Q Consensus 29 ~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~r~~v~WG~~Slv 106 (326)
..++++.+|-+|++.+ +.+.++.+.+. .+ +.+.|+|=-|...+.... .+.....+++++++.+. ..+| ..
T Consensus 52 ~~p~vsViIp~yne~~~i~~~l~sl~~q-~y---p~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~--~n~G--ka 123 (420)
T PRK11204 52 EYPGVSILVPCYNEGENVEETISHLLAL-RY---PNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLA--ENQG--KA 123 (420)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHhC-CC---CCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcC--CCCC--HH
Confidence 4568999999999865 78888888765 44 566777644544332210 00011112455555411 1122 23
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhcCCC
Q 038929 107 SAARRLLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVTSAS 151 (326)
Q Consensus 107 ~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~~~~ 151 (326)
.| +..+++. .+.+|++.+-..+.|-.. .+++.+.+.++++
T Consensus 124 ~a----ln~g~~~-a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~ 164 (420)
T PRK11204 124 NA----LNTGAAA-ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPR 164 (420)
T ss_pred HH----HHHHHHH-cCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence 33 2333433 357999999888877433 2455555655554
No 10
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=41.75 E-value=89 Score=27.42 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=55.1
Q ss_pred eEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCCCCccccCCCcccccCccccCCCchHHHHHH
Q 038929 32 KIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSKFIPSKITFRASPTLVSAAR 110 (326)
Q Consensus 32 kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~~~~~~~f~~v~~i~r~~v~WG~~Slv~A~l 110 (326)
++..+|.++++.. +.+.++.+... .+ .|+| +|..|..... + +... .+++++.. .|+|++-- .
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~-~~------eiiv-vD~gStD~t~-~-i~~~-~~~~v~~~---~~~g~~~~---~ 63 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA-VD------EIIV-VDSGSTDRTV-E-IAKE-YGAKVYQR---WWDGFGAQ---R 63 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc-cC------EEEE-EeCCCCccHH-H-HHHH-cCCEEEEC---CCCChHHH---H
Confidence 4788999998875 67777777532 11 3544 6655543311 1 1122 25555543 67776522 2
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhcCCC
Q 038929 111 RLLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVTSAS 151 (326)
Q Consensus 111 ~ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~~~~ 151 (326)
+ .|++. ...+|+.+|-..+.+-.. .+++.+.+.+++.
T Consensus 64 n---~~~~~-a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 64 N---FALEL-ATNDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred H---HHHHh-CCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 2 23332 235688888888886543 4456666666653
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=35.96 E-value=1.3e+02 Score=25.71 Aligned_cols=104 Identities=12% Similarity=0.207 Sum_probs=54.2
Q ss_pred eEEEEEEeCCCC-C-chHHHHHhcCCCCCCCCCc--eeEEEeeCCCCCcccCC--CCccccCCCcccccCccccCCCchH
Q 038929 32 KIAFLFLTNSDL-H-FSPLWSRFFPKPHRRRHPL--YNIYVHADPTANVTFPR--GSTNTVFDSSKFIPSKITFRASPTL 105 (326)
Q Consensus 32 kiAyLilah~~~-~-~~~L~~~l~~~~~~~~~~~--~~iyIHvD~ks~~~~~~--~~~~~~f~~v~~i~r~~v~WG~~Sl 105 (326)
++..+|-++++. . +++.++.+... .+ +. +.|+| +|-.++..... ...... .+++++. ....+|+-.-
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q-~~---~~~~~eiiv-vdd~s~d~t~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 74 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAI-DY---PHDKLRVYV-LDDGRRPELRALAAELGVE-YGYRYLT-RPDNRHAKAG 74 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhc-CC---CcccEEEEE-EcCCCchhHHHHHHHhhcc-cCceEEE-eCCCCCCcHH
Confidence 588899999864 4 67788888765 44 33 67777 55444322110 000011 1223332 2344554211
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHH---HhcCCC
Q 038929 106 VSAARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNS---LVTSAS 151 (326)
Q Consensus 106 v~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~---l~~~~~ 151 (326)
+ +..|++. ...+|++++...|+|- .+.+... +.++++
T Consensus 75 --~----~n~~~~~-a~~d~i~~lD~D~~~~--~~~l~~l~~~~~~~~~ 114 (234)
T cd06421 75 --N----LNNALAH-TTGDFVAILDADHVPT--PDFLRRTLGYFLDDPK 114 (234)
T ss_pred --H----HHHHHHh-CCCCEEEEEccccCcC--ccHHHHHHHHHhcCCC
Confidence 1 2233333 2468999999988884 3444444 444444
No 12
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=34.91 E-value=1.1e+02 Score=25.57 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=55.9
Q ss_pred ceEEEEEEeCCCC-C-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCC--CCccccCCCcccccCccccCCCchHH
Q 038929 31 LKIAFLFLTNSDL-H-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPR--GSTNTVFDSSKFIPSKITFRASPTLV 106 (326)
Q Consensus 31 ~kiAyLilah~~~-~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~--~~~~~~f~~v~~i~r~~v~WG~~Slv 106 (326)
+++.++|.++++. + +.+.++.+... .+ ..+.|+|--|...+..... .......+.++++.. . +..+..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q-~~---~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~-~---~~~g~~ 72 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQ-TY---PNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFR-E---ENGGIS 72 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhC-cC---CCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEc-c---cCCCHH
Confidence 3688999999987 5 67788888765 33 4456655545443321100 000010123444331 1 122334
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhcCCC
Q 038929 107 SAARRLLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVTSAS 151 (326)
Q Consensus 107 ~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~~~~ 151 (326)
.|--.+++.| ..+|+.++-..|.|-.. .+.+.+.+.++++
T Consensus 73 ~a~n~g~~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~ 113 (202)
T cd04184 73 AATNSALELA-----TGEFVALLDHDDELAPHALYEVVKALNEHPD 113 (202)
T ss_pred HHHHHHHHhh-----cCCEEEEECCCCcCChHHHHHHHHHHHhCCC
Confidence 5544455543 35888888888876332 2444444434444
No 13
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.86 E-value=2e+02 Score=24.37 Aligned_cols=101 Identities=6% Similarity=0.071 Sum_probs=51.0
Q ss_pred EEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CC-CccccCCCcccccCccccCCCchHHHHHHHH
Q 038929 36 LFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RG-STNTVFDSSKFIPSKITFRASPTLVSAARRL 112 (326)
Q Consensus 36 Lilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~-~~~~~f~~v~~i~r~~v~WG~~Slv~A~l~l 112 (326)
+|.++++.. +.+.++.+... .+. .+.+.|+|--|...+.... .. ......++++.++.....++ +...|.-.+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q-~~~-~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~--g~~~a~n~g 77 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSAL-DYP-KEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSIS--GKKNALTTA 77 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhC-CCC-CCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccc--hhHHHHHHH
Confidence 566787765 78888888765 331 1226777776654432210 00 00010024444442211222 223333233
Q ss_pred HHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHHh
Q 038929 113 LATAILDDPANAFFALLSQHCIPLHSFHYVYNSLV 147 (326)
Q Consensus 113 l~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l~ 147 (326)
++ . ...+|++++.+.|.|- .+.|...+.
T Consensus 78 ~~----~-~~~d~i~~~D~D~~~~--~~~l~~l~~ 105 (229)
T cd04192 78 IK----A-AKGDWIVTTDADCVVP--SNWLLTFVA 105 (229)
T ss_pred HH----H-hcCCEEEEECCCcccC--HHHHHHHHH
Confidence 33 2 2468999999999774 456655554
No 14
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=33.79 E-value=1.6e+02 Score=25.35 Aligned_cols=102 Identities=9% Similarity=0.076 Sum_probs=54.9
Q ss_pred eEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCcccccCccccCCCchHHHHH
Q 038929 32 KIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIPSKITFRASPTLVSAA 109 (326)
Q Consensus 32 kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~r~~v~WG~~Slv~A~ 109 (326)
+++.+|.++++++ +.++++.+... ... ...+.|+|--|...+.... ........+.++++..- .-| ...|.
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q-~~~-~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~--~~~---~~~a~ 73 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQ-SYP-KDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP--KRI---QSAGL 73 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhc-cCC-CCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC--CCC---chHHH
Confidence 4778899998875 68888888754 221 1245566655544332100 00011112456666521 112 22343
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHHh
Q 038929 110 RRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNSLV 147 (326)
Q Consensus 110 l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l~ 147 (326)
-.+++.| ..+|+++|.+.|.| +...+...+.
T Consensus 74 N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 74 NIGIRNS-----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred HHHHHHh-----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 3444433 46899999999986 5555655553
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=32.28 E-value=2.2e+02 Score=24.02 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCC--cccccCccccCCCchHHH
Q 038929 32 KIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDS--SKFIPSKITFRASPTLVS 107 (326)
Q Consensus 32 kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~--v~~i~r~~v~WG~~Slv~ 107 (326)
++..+|-+|++.. +.++++.+... .+ +.+.|+|=.|..++.... .+.....+++ ++++. ..-..|...-..
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q-~~---~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 76 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQ-DY---PKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLI-GGEKVGINPKVN 76 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhc-cC---CCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEe-cCCcCCCCHhHH
Confidence 5788999998764 78888888765 44 556666644544432210 0000011122 22333 111223332222
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHHh
Q 038929 108 AARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNSLV 147 (326)
Q Consensus 108 A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l~ 147 (326)
+. ..+++. ...+|++++-+.+.+ +...|...+.
T Consensus 77 ~~----n~g~~~-a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 77 NL----IKGYEE-ARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred HH----HHHHHh-CCCCEEEEECCCceE--ChhHHHHHHH
Confidence 32 223333 346888877666654 5555555543
No 16
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=31.35 E-value=26 Score=25.92 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.1
Q ss_pred ecCCCcCCCChHHHHHHHhcCCC
Q 038929 129 LSQHCIPLHSFHYVYNSLVTSAS 151 (326)
Q Consensus 129 LSG~d~PL~s~~~i~~~l~~~~~ 151 (326)
+.|.+|||+|..++..-|=....
T Consensus 11 ~~~a~FPI~s~~eL~~alP~G~~ 33 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPALPKGPS 33 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-TTSS-
T ss_pred HhcCCCCCCCHHHHHHhCCCCCC
Confidence 56889999999999999876655
No 17
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=31.16 E-value=2.6e+02 Score=25.92 Aligned_cols=101 Identities=8% Similarity=0.024 Sum_probs=59.8
Q ss_pred CCCceEEEEEEeCCCCCchHHHHHhcCCCCC---CCCCceeEEEeeCCCCCcccCCCCccccCCCccccc-CccccCCCc
Q 038929 28 NPKLKIAFLFLTNSDLHFSPLWSRFFPKPHR---RRHPLYNIYVHADPTANVTFPRGSTNTVFDSSKFIP-SKITFRASP 103 (326)
Q Consensus 28 ~~~~kiAyLilah~~~~~~~L~~~l~~~~~~---~~~~~~~iyIHvD~ks~~~~~~~~~~~~f~~v~~i~-r~~v~WG~~ 103 (326)
+.+++||.+.+|-|.-. ..|+.|+.+ ++ ..+....+||-.|..+... .-..... .+++++. +..-.|-..
T Consensus 31 ~~n~tIgl~vfatGkY~--~f~~~F~~S-AEk~Fm~g~~v~YyVFTD~~~~~p--~v~lg~~-r~~~V~~v~~~~~W~~~ 104 (271)
T cd02515 31 KQNITIGLTVFAVGKYT--EFLERFLES-AEKHFMVGYRVIYYIFTDKPAAVP--EVELGPG-RRLTVLKIAEESRWQDI 104 (271)
T ss_pred hcCCEEEEEEEEeccHH--HHHHHHHHH-HHHhccCCCeeEEEEEeCCcccCc--ccccCCC-ceeEEEEeccccCCcHH
Confidence 45899999999988742 266766655 21 1235567889999655322 1111011 1333444 445899999
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEecCCCc
Q 038929 104 TLVSAARRLLATAILDDPANAFFALLSQHCI 134 (326)
Q Consensus 104 Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~ 134 (326)
||...+.-+-...-....+.||...+.....
T Consensus 105 sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~ 135 (271)
T cd02515 105 SMRRMKTLADHIADRIGHEVDYLFCMDVDMV 135 (271)
T ss_pred HHHHHHHHHHHHHHhhcccCCEEEEeeCCce
Confidence 9988776553322111136888887766544
No 18
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=30.63 E-value=2.3e+02 Score=22.77 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=24.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q 038929 98 TFRASPTLVSAARRLLATAILDDPANAFFALLS 130 (326)
Q Consensus 98 v~WG~~Slv~A~l~ll~~Al~~~~~~~~f~lLS 130 (326)
+.+|........-..+++++++ ++..|+|.=|
T Consensus 74 iv~g~v~~g~~~~~~l~~~fa~-p~VayVHvr~ 105 (117)
T PF06718_consen 74 IVTGRVVEGADIEARLAELFAD-PEVAYVHVRN 105 (117)
T ss_pred EEeeeEEcchhHHHHHHHHhcC-CCceEEEeec
Confidence 4477777777777778888886 8889888644
No 19
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=30.42 E-value=1.7e+02 Score=28.86 Aligned_cols=109 Identities=6% Similarity=0.007 Sum_probs=61.8
Q ss_pred CceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCcccccCccccCCCchHHH
Q 038929 30 KLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIPSKITFRASPTLVS 107 (326)
Q Consensus 30 ~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~r~~v~WG~~Slv~ 107 (326)
.++++.+|-+|++.. +.+.++.+.+. .+ +.+.|+|=-|...+.... ........++++++.. ...+| .-
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sll~q-~y---p~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~--~~n~G--ka- 144 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAALAQ-TY---TNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHL--AHNQG--KA- 144 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHcC-CC---CCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEe--CCCCC--HH-
Confidence 467999999999875 77888888766 55 567777655554432210 0001111244555531 12233 22
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhcCCC
Q 038929 108 AARRLLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVTSAS 151 (326)
Q Consensus 108 A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~~~~ 151 (326)
..+..+++. ...+|++.+-+.+.|-.. ..++.+.+.++++
T Consensus 145 ---~AlN~gl~~-a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~ 185 (444)
T PRK14583 145 ---IALRMGAAA-ARSEYLVCIDGDALLDKNAVPYLVAPLIANPR 185 (444)
T ss_pred ---HHHHHHHHh-CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC
Confidence 223444444 457999999999998443 2344455555544
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=24.60 E-value=1.7e+02 Score=22.94 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=59.6
Q ss_pred EEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCccccc-CccccCCCchHHHHHHH
Q 038929 35 FLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIP-SKITFRASPTLVSAARR 111 (326)
Q Consensus 35 yLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~-r~~v~WG~~Slv~A~l~ 111 (326)
.+|.++++++ +.++++.+... .. ..+.|+|--|...+.... ........++++++. ..+ .+.-.|.-.
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q-~~---~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n-----~g~~~~~n~ 72 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQ-TD---PDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPEN-----LGFSAARNR 72 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHH-SG---CEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCC-----SHHHHHHHH
T ss_pred EEEEeeCCHHHHHHHHHHHhhc-cC---CCEEEEEecccccccccccccccccccccccccccccc-----ccccccccc
Confidence 4677888865 78888888764 33 666777755554332210 000001013555655 222 256667777
Q ss_pred HHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhcCCC
Q 038929 112 LLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVTSAS 151 (326)
Q Consensus 112 ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~~~~ 151 (326)
+++.|. .+|+.++-..|++... .+++.+++++++.
T Consensus 73 ~~~~a~-----~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 108 (169)
T PF00535_consen 73 GIKHAK-----GEYILFLDDDDIISPDWLEELVEALEKNPP 108 (169)
T ss_dssp HHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHHCTT
T ss_pred cccccc-----eeEEEEeCCCceEcHHHHHHHHHHHHhCCC
Confidence 777762 2489999999998887 7777888877554
No 21
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.45 E-value=60 Score=23.99 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.6
Q ss_pred CccccCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHHhc
Q 038929 95 SKITFRASPTLVSAARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNSLVT 148 (326)
Q Consensus 95 r~~v~WG~~Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l~~ 148 (326)
...|.-||.+.-.|++. -|||..|||.++.+++..-+-+
T Consensus 38 dttc~~G~~e~tA~E~~---------------kLlT~~DFPfk~a~~vad~iv~ 76 (80)
T COG4746 38 DTTCESGGVEVTAAEAG---------------KLLTDADFPFKSAEQVADTIVN 76 (80)
T ss_pred CCCccCCCeeeeHHHHH---------------hhccccCCCCCCHHHHHHHHHH
Confidence 46677788877655543 2478889999999999876543
No 22
>PF12610 SOCS: Suppressor of cytokine signalling; InterPro: IPR022252 This domain family is found in bacteria and eukaryotes, and is approximately 60 amino acids in length. The family is found in association with PF07525 from PFAM, PF00017 from PFAM. The suppressors of cytokine signaling (SOCS) family play important roles in regulating a variety of signal transduction pathways that are involved in immunity, growth and development of organisms.
Probab=21.62 E-value=30 Score=24.45 Aligned_cols=9 Identities=22% Similarity=0.929 Sum_probs=6.9
Q ss_pred CCCcCCCCh
Q 038929 131 QHCIPLHSF 139 (326)
Q Consensus 131 G~d~PL~s~ 139 (326)
|+|+||++.
T Consensus 48 G~CfPir~~ 56 (60)
T PF12610_consen 48 GQCFPIRTH 56 (60)
T ss_pred heeeecccc
Confidence 788888764
Done!