Query 038929
Match_columns 326
No_of_seqs 130 out of 653
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 5.6E-54 1.9E-58 414.4 16.9 269 30-325 83-383 (391)
2 1qg8_A Protein (spore coat pol 56.4 22 0.00075 30.0 6.4 112 31-152 1-119 (255)
3 3ckj_A Putative uncharacterize 31.5 96 0.0033 27.6 6.7 113 29-153 46-164 (329)
4 2xl1_A Arginine attenuator pep 26.3 25 0.00086 18.9 1.0 21 274-294 3-23 (26)
5 1iio_A Conserved hypothetical 23.2 14 0.00048 26.8 -0.5 21 128-148 60-80 (84)
6 2fy7_A Beta-1,4-galactosyltran 22.5 3E+02 0.01 24.1 8.2 81 28-139 62-146 (287)
7 3bcv_A Putative glycosyltransf 17.6 2.1E+02 0.0071 23.3 5.8 105 30-148 4-111 (240)
8 2om2_B Regulator of G-protein 16.6 65 0.0022 19.4 1.5 13 6-18 7-19 (36)
9 4fix_A UDP-galactofuranosyl tr 15.9 69 0.0024 32.1 2.5 116 28-151 177-298 (657)
10 1wmi_B RELB, hypothetical prot 15.9 64 0.0022 21.7 1.5 23 280-310 32-54 (67)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=5.6e-54 Score=414.36 Aligned_cols=269 Identities=17% Similarity=0.162 Sum_probs=193.6
Q ss_pred CceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCCC--CccccCCCccccc-CccccCCCchH
Q 038929 30 KLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPRG--STNTVFDSSKFIP-SKITFRASPTL 105 (326)
Q Consensus 30 ~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~~--~~~~~f~~v~~i~-r~~v~WG~~Sl 105 (326)
++||||||++|++++ +++|++.+.. +.+.||||+|+|++..+... ...++|+||++++ |+.|.|||+|+
T Consensus 83 ~~kiAflil~h~d~~~l~rll~~ly~-------p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~ 155 (391)
T 2gak_A 83 GFPIAYSIVVHHKIEMLDRLLRAIYM-------PQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTR 155 (391)
T ss_dssp TSCEEEEEEECSCHHHHHHHHHHHCC-------TTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHH
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHhC-------CCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchH
Confidence 589999999999875 5666666542 45568999999997652211 1235678999996 99999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCChHHHHHHHhcCCC-cccccccccccccccccccceeeeecCcccccc
Q 038929 106 VSAARRLLATAILDDPANAFFALLSQHCIPLHSFHYVYNSLVTSAS-FDRSSSAAAYGNIRLSHKSFIEVISKDPRLWKR 184 (326)
Q Consensus 106 v~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~r 184 (326)
|+|+++||+.||+.+++|+|||||||+||||+|+++|++||+.+++ ++++...... ....|++ +...+.+. .. .+
T Consensus 156 v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~-~~~~R~~-~~~~~~~~-~l-~~ 231 (391)
T 2gak_A 156 VKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPP-NKEERWK-KRYAVVDG-KL-TN 231 (391)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCG-GGSHHHH-EEEEEETT-EE-EE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCc-ccccceE-eeeecccc-ce-ee
Confidence 9999999999999756899999999999999999999999999877 3333322110 0111111 10001110 00 01
Q ss_pred hhhccccccCCCCCCCcceecccceEecHHHHHHHhhchHHHHHhhccccCCCCCCCCcchHHhHhhcCCCCC-------
Q 038929 185 YVARGRYAMLPEVPFDDFRVGSQFFILTRKHAVVVVKDRALWRKFRMPCYRADECYPEEHYFPTLLSMQNPDG------- 257 (326)
Q Consensus 185 ~~~~~~~~~~p~~~~~~~~~GSqW~~Ltr~~a~~il~~~~~~~~f~~~~~~~~~~~pDE~ff~TlL~~~~~~~------- 257 (326)
+ ....+++|. ..++++|||||+|||++|+||+++.. .+.|..+|+. +|+|||+|||||+.+...+|
T Consensus 232 ~--~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~--t~~pDE~ffqTll~~~~~pg~~~~~~~ 304 (391)
T 2gak_A 232 T--GIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQD--TYSPDEFLWATIQRIPEVPGSFPSSNK 304 (391)
T ss_dssp E--EEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTT--SSSGGGTHHHHHTTSTTSTTCCCSSGG
T ss_pred e--cccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcC--CcCCchhHHHHHhhccCCCCccccccc
Confidence 1 011123342 46899999999999999999999863 4455555553 77899999999997653221
Q ss_pred ----CcccceEEEeeCCC------CCCCCc----------ccCCCCCCHHHHHHHHhcCCCCCceEEecCCCCCchhHHh
Q 038929 258 ----LTGYTLTRVNWTGT------TNGHPY----------TYKPREVSPELIYKLRESNYSESYLFARKFSPDCLGPLMK 317 (326)
Q Consensus 258 ----~~~~~lryidW~~~------~~~~P~----------~~~~~Dlt~~~l~~l~~~~~~s~~lFARKfd~~~~~~ll~ 317 (326)
..+.++|||+|+.. |+.||. +|+.+| ++.|++ +++||||||+++++..+++
T Consensus 305 ~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~D-----l~~l~~----s~~lFARKF~~~~d~~~l~ 375 (391)
T 2gak_A 305 YDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGD-----LSWMLR----QHHLFANKFDMDVDPFAIQ 375 (391)
T ss_dssp GCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGG-----HHHHTT----SCCSEEECCCTTTCHHHHH
T ss_pred cccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHH-----HHHHHh----CCCceEEccCCccCHHHHH
Confidence 13668999999731 333666 755555 599998 7999999999999999999
Q ss_pred hhhhhhcC
Q 038929 318 ITDSVIFR 325 (326)
Q Consensus 318 ~l~~~~~~ 325 (326)
.|++.|.+
T Consensus 376 ~l~~~l~~ 383 (391)
T 2gak_A 376 CLDEHLRR 383 (391)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998764
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=56.36 E-value=22 Score=30.00 Aligned_cols=112 Identities=9% Similarity=0.111 Sum_probs=65.4
Q ss_pred ceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCcccccCc-c---ccCCCch
Q 038929 31 LKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIPSK-I---TFRASPT 104 (326)
Q Consensus 31 ~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~r~-~---v~WG~~S 104 (326)
|++..+|.+++... +.+.++.+... .+ +.+.|+|=-|...+.... ...... .++++++..- . ..+...+
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q-~~---~~~eiivvDd~S~d~t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G 75 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQ-TF---SDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQSDISGVKERTEKTR 75 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTC-SC---CCEEEEEEECSCCHHHHHHHGGGGG-STTEEEEECCCCSHHHHHSSCH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhc-cC---CceEEEEEECCCCchHHHHHHHHhh-cCCEEEEecccccccccccccC
Confidence 57899999999876 78899999865 44 566676655544332200 011111 1456665411 0 0112445
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhcCCCc
Q 038929 105 LVSAARRLLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVTSASF 152 (326)
Q Consensus 105 lv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~~~~~ 152 (326)
...|--.+++.| ..+|+.+|-..|++-.. .+.+.+.+.++++.
T Consensus 76 ~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~ 119 (255)
T 1qg8_A 76 YAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELDTHPEK 119 (255)
T ss_dssp HHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHc-----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCc
Confidence 666655566554 35899999999987533 34556666666553
No 3
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=31.49 E-value=96 Score=27.58 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=62.1
Q ss_pred CCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccCC--CCc-cccCCCcccccCccccCCCch
Q 038929 29 PKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFPR--GST-NTVFDSSKFIPSKITFRASPT 104 (326)
Q Consensus 29 ~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~~--~~~-~~~f~~v~~i~r~~v~WG~~S 104 (326)
..+++..+|-+|++.. +.+.++.+... .+. ..+.|+| ||-.|...... ... ..+.+.++++.+.... .+
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q-~~~--~~~eiiv-VDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n---~G 118 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPL-VDG--LVDELIV-LDSGSTDDTEIRAVAAGARVVSREQALPEVPIR---PG 118 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGG-BTT--TBSEEEE-EECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCC---CS
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHh-hCC--CCcEEEE-EeCCCCchHHHHHHHhhhhhccceeeeccCCCC---CC
Confidence 4678999999999875 78889988865 331 2356766 55444332110 000 0100111222112222 33
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCcCC--CChHHHHHHHhcCCCcc
Q 038929 105 LVSAARRLLATAILDDPANAFFALLSQHCIPL--HSFHYVYNSLVTSASFD 153 (326)
Q Consensus 105 lv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL--~s~~~i~~~l~~~~~~~ 153 (326)
...|.-.+++.| ..+|+++|-+.|.++ .-.+.+.+.|.++++..
T Consensus 119 ~~~a~n~g~~~a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~ 164 (329)
T 3ckj_A 119 KGEALWRSLAAS-----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVH 164 (329)
T ss_dssp HHHHHHHHHHHC-----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHhC-----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCcc
Confidence 555655566544 248888888888733 33466777766666533
No 4
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=26.25 E-value=25 Score=18.92 Aligned_cols=21 Identities=10% Similarity=0.442 Sum_probs=16.0
Q ss_pred CCCcccCCCCCCHHHHHHHHh
Q 038929 274 GHPYTYKPREVSPELIYKLRE 294 (326)
Q Consensus 274 ~~P~~~~~~Dlt~~~l~~l~~ 294 (326)
+.|.+|+.+|+-.+++....+
T Consensus 3 grpsvftsqdylsdhlwraln 23 (26)
T 2xl1_A 3 GRPSVFTSQDYLSDHLWRALN 23 (26)
T ss_pred CCCceeecHHHHHHHHHHHHh
Confidence 689999999987777665543
No 5
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=23.18 E-value=14 Score=26.84 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.6
Q ss_pred EecCCCcCCCChHHHHHHHhc
Q 038929 128 LLSQHCIPLHSFHYVYNSLVT 148 (326)
Q Consensus 128 lLSG~d~PL~s~~~i~~~l~~ 148 (326)
+|..+|||+++.+++..-+..
T Consensus 60 ll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHHH
Confidence 478899999999999887654
No 6
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=22.45 E-value=3e+02 Score=24.06 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=48.7
Q ss_pred CCCceEEEEEEeCCCCC-chHHHHHhc---CCCCCCCCCceeEEEeeCCCCCcccCCCCccccCCCcccccCccccCCCc
Q 038929 28 NPKLKIAFLFLTNSDLH-FSPLWSRFF---PKPHRRRHPLYNIYVHADPTANVTFPRGSTNTVFDSSKFIPSKITFRASP 103 (326)
Q Consensus 28 ~~~~kiAyLilah~~~~-~~~L~~~l~---~~~~~~~~~~~~iyIHvD~ks~~~~~~~~~~~~f~~v~~i~r~~v~WG~~ 103 (326)
.+.++++.+|.+++... +.++++.+. .. .+ ..+.|+|--| ..+ . +|
T Consensus 62 ~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q-~~---~~~EIiVVdd-s~d---------~----------------~f 111 (287)
T 2fy7_A 62 VSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQR-QQ---LDYGIYVINQ-AGD---------T----------------IF 111 (287)
T ss_dssp BCSCEEEEEEEESSCHHHHHHHHHHHHHHHHH-TT---CEEEEEEEEE-CSS---------S----------------CC
T ss_pred CcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHH-hc---CCceEEEEEe-CCC---------C----------------cc
Confidence 34689999999999875 677777776 22 22 4566654323 111 1 11
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCCh
Q 038929 104 TLVSAARRLLATAILDDPANAFFALLSQHCIPLHSF 139 (326)
Q Consensus 104 Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s~ 139 (326)
+...|.=.++..|++. ...+|++++-+.|+|....
T Consensus 112 ~~a~a~N~G~~~al~~-A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 112 NRAKLLNVGFQEALKD-YDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp CHHHHHHHHHHHHHHH-SCCCEEEEECTTEEESBTT
T ss_pred chhhhhhhHHHHHHHh-CCCCEEEEECCCcccCCCc
Confidence 1122222233344454 4579999999999998773
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=17.57 E-value=2.1e+02 Score=23.27 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=59.8
Q ss_pred CceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcccC-CCCccccCCCcccccCccccCCCchHHH
Q 038929 30 KLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVTFP-RGSTNTVFDSSKFIPSKITFRASPTLVS 107 (326)
Q Consensus 30 ~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~~~-~~~~~~~f~~v~~i~r~~v~WG~~Slv~ 107 (326)
++++..+|.+++... +.+.++.+... .+ +.+.|.|=-|...+.... .......+++++++.. -. + +...
T Consensus 4 ~p~vsViIp~yn~~~~l~~~l~Sl~~q-~~---~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~--~n-~--G~~~ 74 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKYLDQCVQALLAQ-TL---SDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHK--KN-A--GLGM 74 (240)
T ss_dssp CCSEEEEEEESSCTTTHHHHHHHHHTC-SS---SSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEEC--CC-C--CHHH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHhC-cC---CCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEEC--CC-C--ChHH
Confidence 468999999999876 78899999865 44 566676644443332210 0001111245666642 12 2 3444
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhc
Q 038929 108 AARRLLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVT 148 (326)
Q Consensus 108 A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~ 148 (326)
|--.+++.| .-+|+.+|-..|++-.. .+.+.+.+.+
T Consensus 75 a~N~g~~~a-----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 75 ACNSGLDVA-----TGEYVAFCDSDDYVDSDMYMTMYNVAQK 111 (240)
T ss_dssp HHHHHHHHC-----CSSEEEECCTTCCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCEEEEECCCCcCCHHHHHHHHHHHHh
Confidence 544455543 34889999888886433 2344555554
No 8
>2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B* 3onw_C* 3qi2_C*
Probab=16.58 E-value=65 Score=19.41 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=11.0
Q ss_pred hHHHHhhcCCCCC
Q 038929 6 TLFTRASSSSSSP 18 (326)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (326)
+|+.||++..|.+
T Consensus 7 dLLSR~Qs~R~dD 19 (36)
T 2om2_B 7 ELLNRVQSSGAHD 19 (36)
T ss_dssp HHHHHHHTCSCCS
T ss_pred HHHHHhccCcccc
Confidence 7899999998854
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=15.95 E-value=69 Score=32.06 Aligned_cols=116 Identities=6% Similarity=-0.097 Sum_probs=66.9
Q ss_pred CCCceEEEEEEeCCCCC-chHHHHHhcCCCCCCCCCceeEEEeeCCCCCcc-cCCC---CccccCCCcccccCccccCCC
Q 038929 28 NPKLKIAFLFLTNSDLH-FSPLWSRFFPKPHRRRHPLYNIYVHADPTANVT-FPRG---STNTVFDSSKFIPSKITFRAS 102 (326)
Q Consensus 28 ~~~~kiAyLilah~~~~-~~~L~~~l~~~~~~~~~~~~~iyIHvD~ks~~~-~~~~---~~~~~f~~v~~i~r~~v~WG~ 102 (326)
...++++.+|.+++... +.+.++.+... .+.....+.| |=||-.|... .... ......+++++|.. . .
T Consensus 177 ~~~pkVSVVIptYN~~~~L~~~L~SL~~q-t~~~~~~~EI-IVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~-~----N 249 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPADCVNALRELTAD-PLVDQVIGAV-IVPDQGERKVRDHPDFPAAAARLGSRLSIHDQ-P----N 249 (657)
T ss_dssp CSCCCEEEECCBSSCHHHHHHHHHHHTTS-HHHHTTEEEE-EEEECSSSCGGGSTTHHHHHHHHGGGEEEEEC-C----C
T ss_pred CCCCeEEEEEEecCCHHHHHHHHHHHHcC-ccccCCCCEE-EEEECcCCCccchHHHHHHHHhcCCCEEEEEC-C----C
Confidence 34689999999999875 68888888753 1100011233 5567655431 0111 00011245566641 1 3
Q ss_pred chHHHHHHHHHHHHhhcCCCCcEEEEecCCCcCCCC-hHHHHHHHhcCCC
Q 038929 103 PTLVSAARRLLATAILDDPANAFFALLSQHCIPLHS-FHYVYNSLVTSAS 151 (326)
Q Consensus 103 ~Slv~A~l~ll~~Al~~~~~~~~f~lLSG~d~PL~s-~~~i~~~l~~~~~ 151 (326)
.+.-.|-=.+|+.|... .+.+|+++|-..+++-.. .+.+.+++..++.
T Consensus 250 ~G~a~a~N~Gl~~A~g~-~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~ 298 (657)
T 4fix_A 250 LGGSGGYSRVMYEALKN-TDCQQILFMDDDIRLEPDSILRVLAMHRFAKA 298 (657)
T ss_dssp CHHHHHHHHHHHHHHHH-CCCSEEEEECSSEEECTHHHHHHHHHHHHBSS
T ss_pred CCHHHHHHHHHHHHHhc-CCCCEEEEECCCCccChhHHHHHHHHHHhCCC
Confidence 33455667788888765 368999999888876522 3455666666654
No 10
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=15.94 E-value=64 Score=21.71 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHhcCCCCCceEEecCCCC
Q 038929 280 KPREVSPELIYKLRESNYSESYLFARKFSPD 310 (326)
Q Consensus 280 ~~~Dlt~~~l~~l~~~~~~s~~lFARKfd~~ 310 (326)
+..|++.+.+.+|..- ||+|+++
T Consensus 32 ~~e~v~eeEl~ei~~e--------ARd~~~e 54 (67)
T 1wmi_B 32 RDEDITEEEIAELLEL--------ARDEDPE 54 (67)
T ss_dssp CCTTCCHHHHHHHHHH--------HTCCCGG
T ss_pred CCCCCCHHHHHHHHHH--------Hhccchh
Confidence 3456899999999874 9999874
Done!