BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038932
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 228/477 (47%), Gaps = 64/477 (13%)
Query: 36 LPLTLFDTYWLKFLPVERLFFYEVADLTWDLFDSEILPKLKHSLSLTLGLHYLPLAGHMM 95
L LT FD +WL+ P+ LFFYE+ +T F ++P +KHSLS+TL H+ P G ++
Sbjct: 27 LQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLK-HFYPFVGKLV 84
Query: 96 -WPEHAAKPAIYYFLPGQDQKEDIVNGVTVAVAESE-GLDFDVLSGDGIRQAVEFRALTP 153
+P KP I Y V G +VAV +E LD + L+G+ R +F L P
Sbjct: 85 VYPAPTKKPEICY-----------VEGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVP 133
Query: 154 QLSISDNKAEVV-----SIQITLFPKQGFCIGISNHHAFFDGRSTMMFIKSWAYLCKQYL 208
L S ++ + S+Q+TLFP QG IGI+NHH D + F+K+W + +
Sbjct: 134 ILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARS-- 191
Query: 209 DMENASSQQQQTTICLPSELI--PSFDRAFINENDPKGFDLVYVNNWLSFTGNDRSLKVL 266
N S T L +I P D A++ + F+ YV L+ +
Sbjct: 192 -GNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDK------ 244
Query: 267 PSFNDVNKLVRATYVLTRAHXXXXXXXXXXXEDRNRQTSPNKLHLSTFVLACAYVFTCMV 326
+RAT++LTRA +DR P ++S+F +ACAY+++C+
Sbjct: 245 ---------LRATFILTRA-------VINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIA 288
Query: 327 KARGGESDRDVILAFTADYRSRLDPPVPTNYFGNCVGSHTRLVKARDFVEEPAATGLGGV 386
K+R +D+ + F D R+R+ PP+PT YFGNCVG + K + G G
Sbjct: 289 KSR---NDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLI------GKEGF 339
Query: 387 AFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGGQGLG---VAGSIHFDVYG 443
A + E + + T+ + + L M + G V+G+ Y
Sbjct: 340 ITAAKLIGENLHK-----TLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYD 394
Query: 444 SDFGWGRPKKVEIVSIDTTGAVSLAESRHGDGGVEVGLALGKQDMDNFASFFDQGLK 500
DFGWG+PKK+E VSID GA+S+ + + +E+G+ + M++F FD GLK
Sbjct: 395 MDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFDDGLK 451
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 227/476 (47%), Gaps = 62/476 (13%)
Query: 36 LPLTLFDTYWLKFLPVERLFFYEVADLTWDLFDSEILPKLKHSLSLTLGLHYLPLAGHMM 95
L LT FD +WL+ P+ LFFYE+ +T F ++P +KHSLS+TL H+ P G ++
Sbjct: 27 LQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLK-HFYPFVGKLV 84
Query: 96 -WPEHAAKPAIYYFLPGQDQKEDIVNGVTVAVAESE-GLDFDVLSGDGIRQAVEFRALTP 153
+P KP I Y V G +VAV +E LD + L+G+ R +F L P
Sbjct: 85 VYPAPTKKPEICY-----------VEGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVP 133
Query: 154 QLSISDNKAEVV-----SIQITLFPKQGFCIGISNHHAFFDGRSTMMFIKSWAYLCKQYL 208
L S ++ + S+Q+TLFP QG IGI+NHH D + F+K+W + +
Sbjct: 134 ILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARS-- 191
Query: 209 DMENASSQQQQTTICLPSELI--PSFDRAFINENDPKGFDLVYVNNWLSFTGNDRSLKVL 266
N S T L +I P D A++ + F+ YV L+ +
Sbjct: 192 -GNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDK------ 244
Query: 267 PSFNDVNKLVRATYVLTRAHXXXXXXXXXXXEDRNRQTSPNKLHLSTFVLACAYVFTCMV 326
+RAT++LTRA +DR P ++S+F +ACAY+++C+
Sbjct: 245 ---------LRATFILTRA-------VINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIA 288
Query: 327 KARGGESDRDVILAFTADYRSRLDPPVPTNYFGNCVGSHTRLVKARDFVEEPAATGLGGV 386
K+R +D+ + F D R+R PP+PT YFGNCVG + K + + +
Sbjct: 289 KSR---NDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGF--ITAA 343
Query: 387 AFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGGQGLG--VAGSIHFDVYGS 444
+ L + + + G+ D E L VS+G V+G+ Y
Sbjct: 344 KLIGENLHKTLTDYKDGVLKD--DXESFNDL------VSEGXPTTXTWVSGTPKLRFYDX 395
Query: 445 DFGWGRPKKVEIVSIDTTGAVSLAESRHGDGGVEVGLALGKQDMDNFASFFDQGLK 500
DFGWG+PKK+E VSID GA+S+ + + +E+G+ + ++F FD GLK
Sbjct: 396 DFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQXEDFVHIFDDGLK 451
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 232/489 (47%), Gaps = 63/489 (12%)
Query: 28 PDDDELICLPLTLFDTYWLKFLPVERLFFYEVADLTWDLFDSEILPKLKHSLSLTLGLHY 87
P + LPLT FD WL F R+ FY++ D F I+P LK SLSLTL +Y
Sbjct: 14 PGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPD-FVQTIIPTLKDSLSLTLK-YY 71
Query: 88 LPLAGHMMWPEHAAKPAIYYFLPGQDQKEDIVNGVTVAVAESEGLDFDVLSGDGIRQAVE 147
LPLAG++ P+ + ++ G N V+V +ES+ DF+ L G R +
Sbjct: 72 LPLAGNVACPQDWSGYPELRYVTG--------NSVSVIFSESD-XDFNYLIGYHPRNTKD 122
Query: 148 FRALTPQLSISDNK-----AEVVSIQITLFPKQGFCIGISNHHAFFDGRSTMMFIKSWAY 202
F PQL+ + A V++IQ+TLFP G IG +NHH DG + + F+++WA
Sbjct: 123 FYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWAL 182
Query: 203 LCKQYLDMENASSQQQQTTICLPSELIPSFDRAFINENDPKGFDLVYVNNWLSFTGNDRS 262
L K D + L +E IP +DR+ I DP G N + +
Sbjct: 183 LNKFGGDEQ-----------FLANEFIPFYDRSVIK--DPNGVGXSIWNEXKKYKHXXKX 229
Query: 263 LKVLPSFNDVNKLVRATYVLTRAHXXXXXXXXXXXEDRNRQTSPNKLHLSTFVLACAYVF 322
V+ + V R T+++TR P H+++F + CAYV+
Sbjct: 230 SDVVTPPDKV----RGTFIITRHDIGKLKNLVLTRR-------PKLTHVTSFTVTCAYVW 278
Query: 323 TCMVK---ARGGESDRDVILAF--TADYRSRLDPPVPTNYFGNCVGSHTRLVKARDFVEE 377
TC++K A G E D + F AD R++ +PP+P +YFGN + + + D +
Sbjct: 279 TCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGK 338
Query: 378 PAATGLGGVAFVAHKLSEMVQEIGGGLTIQGFDEEKLVK--LMAVMQRVSQGGQGLGVAG 435
T V+ IG + + DEE ++ +V + L VAG
Sbjct: 339 EGFT-------------IAVELIGEAIRKRXKDEEWILSGSWFKEYDKV-DAKRSLSVAG 384
Query: 436 SIHFDVYGSDFGWGRPKKVEIVSIDTTGAV--SLAESRHGDGGVEVGLALGKQDMDNFAS 493
S D+Y +DFGWGRP+K+E VSID + SL++S+ DG +E+GL+L K + FA+
Sbjct: 385 SPKLDLYAADFGWGRPEKLEFVSIDNDDGISXSLSKSKDSDGDLEIGLSLSKTRXNAFAA 444
Query: 494 FFDQGLKDL 502
F G+ L
Sbjct: 445 XFTHGISFL 453
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 110/449 (24%), Positives = 183/449 (40%), Gaps = 63/449 (14%)
Query: 54 LFFYEVADLTWDLFDSEILPKLKHSLSLTLGLHYLPLAGHMMWPEHAAKPAIYYFLPGQD 113
++FY + + FD+++L K +LS L + + P+AG + E G+
Sbjct: 41 VYFYRPTGSS-NFFDAKVL---KDALSRAL-VPFYPMAGRLKRDED-----------GRI 84
Query: 114 QKEDIVNGVTVAVAESEGLDFDVLSGDGIRQAVEFRALTPQLSISDNKAE--VVSIQITL 171
+ E GV AES+G+ D GD +E R L P + S + ++ +Q+T
Sbjct: 85 EIECNGEGVLFVEAESDGVVDDF--GD-FAPTLELRRLIPAVDYSQGISSYALLVLQVTY 141
Query: 172 FPKQGFCIGISNHHAFFDGRSTMMFIKSWAYLCKQYLDMENASSQQQQTTICLPSELIPS 231
F G +G+ H DG S + FI SW+ + + LD + LP P
Sbjct: 142 FKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG-LD------------VTLP----PF 184
Query: 232 FDRAFINENDPKGFDLVYVNNWLSFTGNDRSLKVLPSF---NDVNKLVRATYVLTRAHXX 288
DR + DP ++ +LKV P + V + + + LTR
Sbjct: 185 IDRTLLRARDPPQPQFQHIE-----YQPPPALKVSPQTAKSDSVPETAVSIFKLTREQIS 239
Query: 289 XXXXXXXXXEDRNRQTSPNKLHLSTFVLACAYVFTCMVKARGGESDRDVILAFTADYRSR 348
+ N + S++ + +V+ C KARG E D+ L D R+R
Sbjct: 240 ALKA--------KSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 291
Query: 349 LDPPVPTNYFGNCVGSHTRLVKARDFVEEPAATGLGGVAFVAHKLSEMVQEIGGGLTIQG 408
L P +P YFGN + + T + A D +P V + A K+ + + +
Sbjct: 292 LRPSLPPGYFGNVIFTATPIAIAGDLEFKP-------VWYAASKIHDALARMDNDYLRSA 344
Query: 409 FDEEKLVKLMAVMQRVSQGGQ--GLGVAGSIHFDVYGSDFGWGRPKKVEIVSIDTTGAVS 466
D +L + + R + + LG+ + ++ +DFGWGRP + I G
Sbjct: 345 LDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF 404
Query: 467 LAESRHGDGGVEVGLALGKQDMDNFASFF 495
+ S DG + V ++L + M F SF
Sbjct: 405 ILPSPTNDGSMSVAISLQGEHMKLFQSFL 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 109/449 (24%), Positives = 183/449 (40%), Gaps = 63/449 (14%)
Query: 54 LFFYEVADLTWDLFDSEILPKLKHSLSLTLGLHYLPLAGHMMWPEHAAKPAIYYFLPGQD 113
++FY + + FD+++L K +LS L + + P+AG + E G+
Sbjct: 44 VYFYRPTGSS-NFFDAKVL---KDALSRAL-VPFYPMAGRLKRDED-----------GRI 87
Query: 114 QKEDIVNGVTVAVAESEGLDFDVLSGDGIRQAVEFRALTPQLSISDNKAE--VVSIQITL 171
+ E GV AES+G+ D GD +E R L P + S + ++ +Q+T
Sbjct: 88 EIECNGEGVLFVEAESDGVVDDF--GD-FAPTLELRRLIPAVDYSQGISSYALLVLQVTY 144
Query: 172 FPKQGFCIGISNHHAFFDGRSTMMFIKSWAYLCKQYLDMENASSQQQQTTICLPSELIPS 231
F G +G+ H DG S + FI SW+ + + LD + LP P
Sbjct: 145 FKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARG-LD------------VTLP----PF 187
Query: 232 FDRAFINENDPKGFDLVYVNNWLSFTGNDRSLKVLP---SFNDVNKLVRATYVLTRAHXX 288
DR + DP ++ +L V P + + V + + + LTR
Sbjct: 188 IDRTLLRARDPPQPQFQHIE-----YQPPPALAVSPQTAASDSVPETAVSIFKLTREQIS 242
Query: 289 XXXXXXXXXEDRNRQTSPNKLHLSTFVLACAYVFTCMVKARGGESDRDVILAFTADYRSR 348
+ N + S++ + +V+ C KARG E D+ L D R+R
Sbjct: 243 ALKA--------KSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 294
Query: 349 LDPPVPTNYFGNCVGSHTRLVKARDFVEEPAATGLGGVAFVAHKLSEMVQEIGGGLTIQG 408
L P +P YFGN + + T + A D +P V + A K+ + + +
Sbjct: 295 LRPSLPPGYFGNVIFTATPIAIAGDLEFKP-------VWYAASKIHDALARMDNDYLRSA 347
Query: 409 FDEEKLVKLMAVMQRVSQGGQ--GLGVAGSIHFDVYGSDFGWGRPKKVEIVSIDTTGAVS 466
D +L + + R + + LG+ + ++ +DFGWGRP + I G
Sbjct: 348 LDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF 407
Query: 467 LAESRHGDGGVEVGLALGKQDMDNFASFF 495
+ S DG + V ++L + M F SF
Sbjct: 408 ILPSPTNDGSMSVAISLQGEHMKLFQSFL 436
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 109/449 (24%), Positives = 183/449 (40%), Gaps = 63/449 (14%)
Query: 54 LFFYEVADLTWDLFDSEILPKLKHSLSLTLGLHYLPLAGHMMWPEHAAKPAIYYFLPGQD 113
++FY + + FD+++L K +LS L + + P+AG + E G+
Sbjct: 44 VYFYRPTGSS-NFFDAKVL---KDALSRAL-VPFYPMAGRLKRDED-----------GRI 87
Query: 114 QKEDIVNGVTVAVAESEGLDFDVLSGDGIRQAVEFRALTPQLSISDNKAE--VVSIQITL 171
+ E GV AES+G+ D GD +E R L P + S + ++ +Q+T
Sbjct: 88 EIECNGEGVLFVEAESDGVVDDF--GD-FAPTLELRRLIPAVDYSQGISSYALLVLQVTY 144
Query: 172 FPKQGFCIGISNHHAFFDGRSTMMFIKSWAYLCKQYLDMENASSQQQQTTICLPSELIPS 231
F G +G+ H DG S + FI SW+ + + LD + LP P
Sbjct: 145 FKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG-LD------------VTLP----PF 187
Query: 232 FDRAFINENDPKGFDLVYVNNWLSFTGNDRSLKVLP---SFNDVNKLVRATYVLTRAHXX 288
DR + DP ++ +L V P + + V + + + LTR
Sbjct: 188 IDRTLLRARDPPQPQFQHIE-----YQPPPALAVSPQTAASDSVPETAVSIFKLTREQIS 242
Query: 289 XXXXXXXXXEDRNRQTSPNKLHLSTFVLACAYVFTCMVKARGGESDRDVILAFTADYRSR 348
+ N + S++ + +V+ C KARG E D+ L D R+R
Sbjct: 243 ALKA--------KSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 294
Query: 349 LDPPVPTNYFGNCVGSHTRLVKARDFVEEPAATGLGGVAFVAHKLSEMVQEIGGGLTIQG 408
L P +P YFGN + + T + A D +P V + A K+ + + +
Sbjct: 295 LRPSLPPGYFGNVIFTATPIAIAGDLEFKP-------VWYAASKIHDALARMDNDYLRSA 347
Query: 409 FDEEKLVKLMAVMQRVSQGGQ--GLGVAGSIHFDVYGSDFGWGRPKKVEIVSIDTTGAVS 466
D +L + + R + + LG+ + ++ +DFGWGRP + I G
Sbjct: 348 LDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF 407
Query: 467 LAESRHGDGGVEVGLALGKQDMDNFASFF 495
+ S DG + V ++L + M F SF
Sbjct: 408 ILPSPTNDGSMSVAISLQGEHMKLFQSFL 436
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 131/361 (36%), Gaps = 77/361 (21%)
Query: 141 GIRQAVEFRAL---TPQLSISDNKAEV-----VSIQITLFPKQGFCIGISNHHAFFDGRS 192
I+ VE L P + K EV ++++I+ F G IG++ H D S
Sbjct: 108 AIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLS 167
Query: 193 TMMFIKSWAYLCKQYLDMENASSQQQQTTICLPSELIPSFDRAFINENDPKGFDLVYVNN 252
F+ +W C+ +T I LP+ FDL +
Sbjct: 168 LATFLNAWTATCRG------------ETEIVLPN------------------FDLAARH- 196
Query: 253 WLSFTGNDRSLKVLPSFNDVNKLVRATYVLTRAHX-XXXXXXXXXXEDRNRQTSPNKLHL 311
N S +++P N V K +V + E++N
Sbjct: 197 -FPPVDNTPSPELVPDENVVMK----RFVFDKEKIGALRAQASSASEEKN---------F 242
Query: 312 STFVLACAYVFTCMV---KARGGESDRDVILAFTADYRSRLDPPVPTNYFGNCVGSHTRL 368
S L AY++ ++ +A+ G ++ V++ + RSR++PP+P GN T L
Sbjct: 243 SRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQ-AVNLRSRMNPPLPHYAMGNIA---TLL 298
Query: 369 VKARDFVEEPAATGLGGVAFVAHKLSEMVQEIGGGLTIQGFDE-EKLVKLMAVMQRVSQG 427
A D A +++ + L D +L+K M + + +
Sbjct: 299 FAAVD-------------AEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYEL-EP 344
Query: 428 GQGLGVAGSIHFDVYGSDFGWGRPKKVEIVSIDTTGAVSLAESRHGDGGVEVGLALGKQD 487
+ L Y DFGWG+P + A L ++R GD GVE L + + +
Sbjct: 345 QELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGD-GVEAWLPMAEDE 403
Query: 488 M 488
M
Sbjct: 404 M 404
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 384 GGVAFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGG 428
G V A + EM QE +TI GF EE+ ++ V+ V Q G
Sbjct: 318 GHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLG 362
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 384 GGVAFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGG 428
G V A + EM QE +TI GF EE+ ++ V+ V Q G
Sbjct: 318 GHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLG 362
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 384 GGVAFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGG 428
G V A + EM QE +TI GF EE+ ++ V+ V Q G
Sbjct: 318 GHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLG 362
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 384 GGVAFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGG 428
G V A + EM QE +TI GF EE+ ++ V+ V Q G
Sbjct: 318 GHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLG 362
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 384 GGVAFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGG 428
G V A + EM QE +TI GF EE+ ++ V+ V Q G
Sbjct: 318 GHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLG 362
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 384 GGVAFVAHKLSEMVQEIGGGLTIQGFDEEKLVKLMAVMQRVSQGG 428
G V A + EM QE +TI GF EE+ ++ V+ V Q G
Sbjct: 318 GHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLG 362
>pdb|2RD7|C Chain C, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 184
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 114 QKEDIVNGVTVAVAESEGLDFDVLSGDGIRQAVEFRALTPQLSISDN----------KAE 163
Q D V V VAE++ F VL + Q + + L +SD+ +A
Sbjct: 97 QARDARGAVHVVVAETDYQSFAVLYLERAGQ-LSVKLYARSLPVSDSVLSGFEQRVQEAH 155
Query: 164 VVSIQITLFPKQGFCIGISNHH 185
+ QI FPK GFC H
Sbjct: 156 LTEDQIFYFPKYGFCEAADQFH 177
>pdb|3OJY|C Chain C, Crystal Structure Of Human Complement Component C8
Length = 182
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 114 QKEDIVNGVTVAVAESEGLDFDVLSGDGIRQAVEFRALTPQLSISDN----------KAE 163
Q D V V VAE++ F VL + Q + + L +SD+ +A
Sbjct: 95 QARDARGAVHVVVAETDYQSFAVLYLERAGQ-LSVKLYARSLPVSDSVLSGFEQRVQEAH 153
Query: 164 VVSIQITLFPKQGFCIGISNHH 185
+ QI FPK GFC H
Sbjct: 154 LTEDQIFYFPKYGFCEAADQFH 175
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 351 PPVPTNYFGNCVGSHTRLVKARDFVEEPAATGLGGVAFVAH 391
PP+ +FG V + R+++ RD ++E +G + AH
Sbjct: 229 PPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAH 269
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 299 DRNRQTSPNKLHLSTFVLACAYVFTCMVKARGGESDRDVILAFTADYRSRLDPPVPTNYF 358
DR +Q S L + V+ + + C+V G + +L TA +++DPP T F
Sbjct: 299 DRVKQVS-GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 357
Query: 359 G 359
G
Sbjct: 358 G 358
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 299 DRNRQTSPNKLHLSTFVLACAYVFTCMVKARGGESDRDVILAFTADYRSRLDPPVPTNYF 358
DR +Q S L + V+ + + C+V G + +L TA +++DPP T F
Sbjct: 263 DRVKQVS-GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 321
Query: 359 GN 360
G
Sbjct: 322 GR 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,791,062
Number of Sequences: 62578
Number of extensions: 617327
Number of successful extensions: 1193
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 28
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)