Your job contains 1 sequence.
>038933
MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM
AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD
IKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV
EVKRSHPKDRIDKFMNCYDCNNSNFGFGFGGGFSYGYDGFFYFYPAFQIHQCYGSPSAGR
GGLLVPANPVCPSYGLCMNGYCNGSFHQMAESTADGSNSTGDHASGLEAPATRKLSHIDD
LSSLKVGAVTVENQRAGVEFHDSTVLPSTKCKQTGTVSTHIIFSEFS
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038933
(347 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 418 2.5e-41 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 385 2.2e-38 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 410 2.6e-38 1
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 407 5.5e-38 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 402 1.9e-37 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 340 2.7e-34 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 338 5.6e-34 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 338 5.6e-34 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 338 5.6e-34 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 338 5.6e-34 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 338 5.6e-34 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 338 5.6e-34 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 334 1.5e-33 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 338 1.9e-33 2
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 361 4.1e-33 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 338 1.1e-30 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 306 4.2e-30 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 327 1.6e-29 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 319 1.2e-28 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 317 1.9e-28 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 314 3.9e-28 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 314 3.9e-28 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 314 3.9e-28 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 314 3.9e-28 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 314 3.9e-28 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 313 5.0e-28 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 312 6.4e-28 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 315 1.9e-27 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 307 2.2e-27 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 189 2.6e-27 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 306 2.8e-27 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 306 2.8e-27 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 304 4.5e-27 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 304 4.5e-27 1
FB|FBgn0004903 - symbol:Rb97D "Ribonuclear protein at 97D... 306 4.6e-27 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 281 5.8e-27 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 281 5.8e-27 2
FB|FBgn0010258 - symbol:Rbp4 "RNA-binding protein 4" spec... 301 9.4e-27 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 300 1.2e-26 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 299 1.5e-26 1
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 298 1.9e-26 1
UNIPROTKB|F1NCI5 - symbol:HNRNPA0 "Uncharacterized protei... 297 2.5e-26 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 294 5.2e-26 1
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 294 5.2e-26 1
UNIPROTKB|E2RBV8 - symbol:HNRNPA0 "Uncharacterized protei... 294 5.2e-26 1
UNIPROTKB|F1RH94 - symbol:HNRNPA0 "Uncharacterized protei... 294 5.2e-26 1
UNIPROTKB|Q13151 - symbol:HNRNPA0 "Heterogeneous nuclear ... 294 5.2e-26 1
MGI|MGI:1924384 - symbol:Hnrnpa0 "heterogeneous nuclear r... 292 8.4e-26 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 288 2.2e-25 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 287 2.9e-25 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 287 2.9e-25 1
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 287 2.9e-25 1
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 287 2.9e-25 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 287 2.9e-25 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 287 2.9e-25 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 287 2.9e-25 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 287 2.9e-25 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 286 3.6e-25 1
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 285 4.6e-25 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 285 4.6e-25 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 285 4.6e-25 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 283 7.6e-25 1
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib... 283 7.6e-25 1
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 282 9.7e-25 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 282 9.7e-25 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 281 1.2e-24 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 280 1.6e-24 1
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 279 2.0e-24 1
UNIPROTKB|F1N4K3 - symbol:F1N4K3 "Uncharacterized protein... 278 2.6e-24 1
UNIPROTKB|F1SCM6 - symbol:LOC100522063 "Uncharacterized p... 278 2.6e-24 1
UNIPROTKB|F1SCL3 - symbol:LOC100522980 "Uncharacterized p... 278 2.6e-24 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 278 2.6e-24 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 278 2.6e-24 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 278 2.6e-24 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 278 2.6e-24 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 278 2.6e-24 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 278 2.6e-24 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 278 2.6e-24 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 278 2.6e-24 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 277 3.3e-24 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 277 3.3e-24 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 277 3.3e-24 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 277 3.3e-24 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 277 3.3e-24 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 277 3.3e-24 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 277 3.3e-24 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 277 3.3e-24 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 275 5.3e-24 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 275 5.3e-24 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 273 8.7e-24 1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 272 1.1e-23 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 269 2.3e-23 1
WARNING: Descriptions of 833 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 418 (152.2 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 85/182 (46%), Positives = 114/182 (62%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+GG+S +TNEE L+EYFS +G V E +I++ R TG RGFGFV+F ++AE +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
KH++ G+ VE KKA+P+ + + +S + G T+KIFVGGLP +
Sbjct: 67 KHNID-GRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
GT TD V+ D T RPRGFGFIT+DSE+A VL FH+L KMVEVKR+ P
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVP 185
Query: 188 KD 189
K+
Sbjct: 186 KE 187
Score = 159 (61.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAE 62
P RK+FVGG+ E + YF Q+GT + +++ T RGFGF+ + E
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 63 DALQHKHHVILGKEVEVKKAIPK 85
L H + GK VEVK+A+PK
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPK 186
Score = 37 (18.1 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 254 YGLCMNGYC--NGSFHQMAEST----ADGSNSTGDHASGL 287
+GL GY N ++ A S+ A +N+TG +GL
Sbjct: 388 FGLGTGGYAARNPGANKAAPSSSFSSASATNNTGYDTAGL 427
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 385 (140.6 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 80/184 (43%), Positives = 114/184 (61%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+GG+S +T+E LREYFS +G V + ++R + TG RGFGFV F+ ++ + LQ
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEIN--TKKIFVGGLPLDIXXXX 125
KHH+ ++V+VK+A+ + + + N + D+ N TKKIFVGGLP +
Sbjct: 67 KHHID-NRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G V+DA ++ D+ T RPRGFGF++FDSED+ + VL FH L K VEVKR+
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Query: 186 HPKD 189
PKD
Sbjct: 186 LPKD 189
Score = 154 (59.3 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V +K+FVGG+ + R YF YG V + +I+ + T RGFGFV F +
Sbjct: 107 VRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDL 166
Query: 64 ALQHKHHVILGKEVEVKKAIPK 85
L H + GK+VEVK+A+PK
Sbjct: 167 VLHKTFHDLNGKQVEVKRALPK 188
Score = 127 (49.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 106 EINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165
E + K+F+GG+ D G V V+ +K TGRPRGFGF+ F +
Sbjct: 2 ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVID 61
Query: 166 NVLQTRFHKLKYKMVEVKRSHPKD 189
VLQ + H + + V+VKR+ ++
Sbjct: 62 RVLQDKHH-IDNRDVDVKRAMSRE 84
Score = 42 (19.8 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 233 YGSPSAGRGGLLVPANPVCPSYG 255
YGS G GG NP YG
Sbjct: 252 YGSNGVGYGGFGGYGNPAGAPYG 274
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 92/195 (47%), Positives = 118/195 (60%)
Query: 1 MEPVS-LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKIS 59
ME S L KLF+GG+S +T+EE L+EYF +YG + E +I+R R TG RGFGF++F S
Sbjct: 8 MESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 67
Query: 60 MAEDALQHKHHVILGKEVEVKKAIPKGH----KLEESNGHS-GNCVGDDDTEINTKKIFV 114
+AE + KH +I G+ VE KKA+P+ K S H G + TKKIFV
Sbjct: 68 VAERVIMDKH-IIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFV 126
Query: 115 GGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHK 174
GGLP I GT+ D V+ D T RPRGFGFITFDSE++ + VL FH+
Sbjct: 127 GGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHE 186
Query: 175 LKYKMVEVKRSHPKD 189
L KMVEVKR+ PK+
Sbjct: 187 LNGKMVEVKRAVPKE 201
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 86/186 (46%), Positives = 118/186 (63%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S ET+E+ LRE+F+ YG V + +++R +LTG RGFGFVIF+ S+ + LQ
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNC----VGDDDTEINTKKIFVGGLPLDIXX 123
KH + +EV+VK+A+ + ++ +G +GN D TKKIFVGGLP +
Sbjct: 67 KHSIDT-REVDVKRAMSREE--QQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123
Query: 124 XXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183
G VTD ++ D+ T RPRGFGF++FDSEDA ++VL FH L K VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183
Query: 184 RSHPKD 189
R+ PKD
Sbjct: 184 RALPKD 189
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 35/95 (36%), Positives = 51/95 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+ +E R+YF YG V + I+ + T RGFGFV F + L
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
H + GK+VEVK+A+PK + + G G +G
Sbjct: 170 KTFHDLSGKQVEVKRALPK----DANPGGGGRSMG 200
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 89/188 (47%), Positives = 114/188 (60%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
L KLF+GG+S +T+EE LR+YFS YG V E +I+R R TG RGFGF++F ++E +
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 66 QHKHHVILGKEVEVKKAIPKGH----KLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
KH +I G+ VE KKA+P+ K S H + V TKKIFVGGLP I
Sbjct: 65 MDKH-IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGR--TKKIFVGGLPSSI 121
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
GT+ D V+ D T RPRGFGFITFDS+DA + VL FH+L K+VE
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 182 VKRSHPKD 189
VKR+ PK+
Sbjct: 182 VKRAVPKE 189
Score = 123 (48.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 106 EINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165
E + K+F+GG+ D G V +A ++ D+ TGR RGFGFI F +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 166 NVLQTRFHKLKYKMVEVKRSHPKD 189
V+ + H + + VE K++ P+D
Sbjct: 62 RVIMDK-HIIDGRTVEAKKAVPRD 84
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 340 (124.7 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 71/182 (39%), Positives = 101/182 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
K H + G+ ++ K P+G + E++ G G +KKIFVGG+P +
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKTRTKDG-WKGSKSDSNKSKKIFVGGIPHNCGEAELR 130
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF++E + + + FH + K VEVK++ P
Sbjct: 131 DYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEP 190
Query: 188 KD 189
+D
Sbjct: 191 RD 192
Score = 166 (63.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+ E LR+YF+++G V E ++I RGFGF+ F + A+
Sbjct: 113 KKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVN 172
Query: 67 HKHHVILGKEVEVKKAIPKGHK 88
H I+GK+VEVKKA P+ K
Sbjct: 173 MHFHDIMGKKVEVKKAEPRDSK 194
Score = 48 (22.0 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 244 LVPANPVCPSYGLCMNGYCNGSFHQMAESTADGSNSTGDHASGLEAPAT 292
L A P P + GY S AD S T +A+ AP++
Sbjct: 335 LSKAAPAQPDFSYSQYGY-GQDLSAFGHSFADPSQPTASYAAAPSAPSS 382
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 338 (124.0 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 120
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 188 KD 189
+D
Sbjct: 181 RD 182
Score = 166 (63.5 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 164 HFHDIMGKKVEVKRAEPRDSK-SQAPGQPG 192
Score = 47 (21.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 228 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 255
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 338 (124.0 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 188 KD 189
+D
Sbjct: 191 RD 192
Score = 166 (63.5 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSK-SQAPGQPG 202
Score = 47 (21.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 238 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 265
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 338 (124.0 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 188 KD 189
+D
Sbjct: 191 RD 192
Score = 166 (63.5 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSK-SQAPGQPG 202
Score = 47 (21.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 238 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 265
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 338 (124.0 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 188 KD 189
+D
Sbjct: 191 RD 192
Score = 166 (63.5 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSK-SQAPGQPG 202
Score = 47 (21.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 238 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 265
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 338 (124.0 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 188 KD 189
+D
Sbjct: 191 RD 192
Score = 166 (63.5 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSK-NQAPGQPG 202
Score = 47 (21.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 238 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 265
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 338 (124.0 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 188 KD 189
+D
Sbjct: 191 RD 192
Score = 166 (63.5 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSK-NQAPGQPG 202
Score = 47 (21.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 238 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 265
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 334 (122.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEG-WKGPRSDSSKSNKIFVGGIPHNCGETELR 129
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 130 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 189
Query: 188 KD 189
+D
Sbjct: 190 RD 191
Score = 166 (63.5 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 172
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 173 HFHDIMGKKVEVKRAEPRDSK-NQAPGQPG 201
Score = 47 (21.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 237 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 264
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 338 (124.0 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 70/182 (38%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELR 120
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 188 KD 189
+D
Sbjct: 181 RD 182
Score = 164 (62.8 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 164 HFHDIMGKKVEVKRAEPRDSK-SQTPGPPG 192
Score = 42 (19.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P GRG P P SY
Sbjct: 228 PAGQAIGGYGPPPPGRGA--PPPPPPFASY 255
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 85/197 (43%), Positives = 114/197 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+++ET+EE L++YFS+YG V E ++ + ++TG RGFGFV F AL+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 68 KHHVILGKEVEVKKAIPKGH-------------KLEESNGHSGNCVGDDDTEINTKKIFV 114
H ILGK V+V+KAI K K+++ NG + T TKKIFV
Sbjct: 67 THF-ILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTS-RTKKIFV 124
Query: 115 GGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHK 174
GGL + G TD V+ D T RPRGFGF+T+DSED+ V+Q+ FH+
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHE 184
Query: 175 LKYKMVEVKRSHPKDRI 191
L K VEVKR+ PK+ I
Sbjct: 185 LSDKRVEVKRAIPKEGI 201
Score = 179 (68.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T EE + YF ++G + +++ +T RGFGFV + E +Q
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
H + K VEVK+AIPK ++ +NG++ N
Sbjct: 180 SNFHELSDKRVEVKRAIPK-EGIQSNNGNAVN 210
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 72/183 (39%), Positives = 101/183 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEIN-TKKIFVGGLPLDIXXXXX 126
+ H + G+ ++ K P+G + E S G + TE + + KIFVGG+P +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 127 XXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSH 186
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+
Sbjct: 131 KEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 187 PKD 189
P+D
Sbjct: 191 PRD 193
Score = 163 (62.4 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E L+EYF+++G V E ++I RGFGF+ F + A+
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
H I+GK+VEVK+A P+ K ++ G G+
Sbjct: 175 HFHDIMGKKVEVKRAEPRDSK-SQTPGPPGS 204
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 306 (112.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 66/185 (35%), Positives = 106/185 (57%)
Query: 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDA 64
S K+FVGG++RET ++F +YG + +++I++ R TG RGFGFV + S+ +
Sbjct: 40 SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99
Query: 65 LQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXX 124
+Q +H+I+GK+VE+K+ IP+G S N + TKKIFVGG+P +
Sbjct: 100 IQD-NHIIIGKQVEIKRTIPRGSM-------SSN-------DFKTKKIFVGGIPSSVDDD 144
Query: 125 XXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFH-KLKYKMVEVK 183
G + + ++ D TGR RGFGF+T++SED +++L +L VE+K
Sbjct: 145 EFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIK 204
Query: 184 RSHPK 188
++ PK
Sbjct: 205 KAEPK 209
Score = 42 (19.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 233 YGSPSAGRGGLLVPANPVCPSYGLC-MNGYCNG 264
YG P G GG P+ YG + GY G
Sbjct: 331 YGEPGGGYGG---PSGSYGGGYGSSGIGGYGGG 360
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 87/284 (30%), Positives = 130/284 (45%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+ ++T ++F +YG + +++I+R R TG RGFGF+ F S+ + ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H VI GK+VE+K+ IPKG +G G+ +I TKKIFVGG+P +
Sbjct: 80 TH-VINGKQVEIKRTIPKG---------AG---GNQSKDIKTKKIFVGGIPSTVTEDELK 126
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186
G V + VI D ET R RGFGF+ FDSE+ + +L + VE+K++
Sbjct: 127 DFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAE 186
Query: 187 PKDRIDKFMNCYDCN---NSNXXXXXXXXXXXXXXXXXXXXPAFQIHQCYGSPSAGRGGL 243
PK +++ Y + S+ P I G S GG
Sbjct: 187 PKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGY 246
Query: 244 LVPANPVCPSYGLCMNGYCNGSFHQMAESTADGSNST-GDHASG 286
V P +G N Y GS G +S G + SG
Sbjct: 247 GYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSG 290
Score = 160 (61.4 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
+ +K+FVGG+ E+ L+++F++YG V E +IR T RGFGFVIF + ++
Sbjct: 106 IKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
Query: 64 ALQHKHHVILGK-EVEVKKAIPK 85
L + + + +VE+KKA PK
Sbjct: 166 LLSKGNMIDMADTQVEIKKAEPK 188
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 63/193 (32%), Positives = 111/193 (57%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
+EP +LRK+FVGG++ T ++ +RE++SQ+G + + +++R T RGFGFV F+ +
Sbjct: 17 LEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
+ A++ + H+I GK V+ K+A+P+ ++ N N ++TK+++V G+ D
Sbjct: 77 VDAAMKQRPHIIDGKTVDPKRAVPR----DDKNRSESN--------VSTKRLYVSGVRED 124
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
GTVT + +I DK T +PRGFGF+TFD D+ + + + H +
Sbjct: 125 HTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRC 184
Query: 181 EVKRSHPKDRIDK 193
+V++ KD + K
Sbjct: 185 DVRKGLSKDEMSK 197
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 71/182 (39%), Positives = 106/182 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGGVS ET ET YF ++G V +++I+ R+TG+ RGFGFV F ++AE L+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE- 125
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ HVI ++V++K+ +P+G K + S T+KIFVGGLP +
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIKAVS-----------KTRKIFVGGLPPLLEEDELK 174
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186
G + + ++ D TGR RGFGF+TF +ED+ + + + H+L K VE+KR+
Sbjct: 175 NYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAE 234
Query: 187 PK 188
PK
Sbjct: 235 PK 236
Score = 143 (55.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIF-TKISMAEDAL 65
RK+FVGG+ E+ L+ YF YG + E I+ TG RGFGFV F T+ S+
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 66 QHKHHVILGKEVEVKKAIPK 85
K H + K+VE+K+A PK
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 70/182 (38%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T +E LREYF Q+G V+E L++R LT RGFGFV F + + L
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + K ++ K A P+ TKKIFVGGL ++
Sbjct: 61 SRHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVK 106
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ P
Sbjct: 107 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 166
Query: 188 KD 189
K+
Sbjct: 167 KE 168
Score = 161 (61.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 149 IHFHEINNKMVECKKAQPK 167
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 70/182 (38%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T +E LREYF Q+G V+E L++R LT RGFGFV F + + L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + K ++ K A P+ TKKIFVGGL ++
Sbjct: 81 SRHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVK 126
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ P
Sbjct: 127 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Query: 188 KD 189
K+
Sbjct: 187 KE 188
Score = 161 (61.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 70/182 (38%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T +E LREYF Q+G V+E L++R LT RGFGFV F + + L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + K ++ K A P+ TKKIFVGGL ++
Sbjct: 81 SRHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVK 126
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ P
Sbjct: 127 HYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Query: 188 KD 189
K+
Sbjct: 187 KE 188
Score = 159 (61.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E ++ YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 70/182 (38%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T +E LREYF Q+G V+E L++R LT RGFGFV F + + L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + K ++ K A P+ TKKIFVGGL ++
Sbjct: 81 SRHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVK 126
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ P
Sbjct: 127 HYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Query: 188 KD 189
K+
Sbjct: 187 KE 188
Score = 159 (61.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E ++ YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 70/182 (38%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T +E LREYF Q+G V+E L++R LT RGFGFV F + + L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + K ++ K A P+ TKKIFVGGL ++
Sbjct: 81 SRHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVK 126
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ P
Sbjct: 127 HYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Query: 188 KD 189
K+
Sbjct: 187 KE 188
Score = 159 (61.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E ++ YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 66/182 (36%), Positives = 100/182 (54%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T E LR+YF ++G V E +++R T RGFGF+ F S + L +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + GK+++ K A PK + + TKK+F+GGL
Sbjct: 106 REHELDGKKIDPKVAFPKRTQAK--------------LVTKTKKVFIGGLSATSTLEDMK 151
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TFDS++ A+ V + FH++ KMVE K++ P
Sbjct: 152 QYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQP 211
Query: 188 KD 189
K+
Sbjct: 212 KE 213
Score = 162 (62.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+F+GG+S + E +++YF YG VE+ +++ + T RGFGFV F +A+ +
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I GK VE KKA PK
Sbjct: 194 IHFHEINGKMVECKKAQPK 212
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 67/182 (36%), Positives = 99/182 (54%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+ E+LR+YF +YG + E ++++ T RGFGFV F+ + + L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + GK+V+ K A P+ H TKKIFVGGL
Sbjct: 90 GTHELDGKKVDPKVAFPR-------RAHPKMVT-------RTKKIFVGGLSAPTTLEDVK 135
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G + DA ++ DK+T R RGFGF+TF SED + V + FH++ KMVE K++ P
Sbjct: 136 SYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQP 195
Query: 188 KD 189
K+
Sbjct: 196 KE 197
Score = 157 (60.3 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E ++ YF Q+G +E+ +++ + T RGFGFV F + + +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 178 IHFHEINNKMVECKKAQPK 196
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 315 (115.9 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 67/184 (36%), Positives = 105/184 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +T+ + L+EYF+ +GTV + LI++ +T RGFGF+ F + E L+
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + GK+++ K A PK ++ ++N TKKIFVGG+ D
Sbjct: 264 PIHTLDGKKIDPKHATPK-NRPRQAN--------------KTKKIFVGGVSQDTSAEEVK 308
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V + ++ D++T R RGFGF+TF++ED + V + FH +K K VE K++ P
Sbjct: 309 AYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQP 368
Query: 188 KDRI 191
K+ +
Sbjct: 369 KEAV 372
Score = 183 (69.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGGVS++T+ E ++ YFSQ+G VEET+++ + T RGFGFV F + + +
Sbjct: 291 KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE 350
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K+VE KKA PK
Sbjct: 351 IHFHTIKNKKVECKKAQPK 369
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 65/182 (35%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+ ++LR+YFS++G + E +++R T RGFGFV F + + L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
HH + K ++ K A P+ TKKIFVGGL +
Sbjct: 82 PHHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSANTVVEDVK 127
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF++ED V + FH++ KMVE K++ P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Query: 188 KD 189
K+
Sbjct: 188 KE 189
Score = 163 (62.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G VE+ +++ + T RGFGFV F + E +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 91 ESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRP 150
E +G +D++ + K+F+GGL G + + V+ D T R
Sbjct: 2 EGDGSQATSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
Query: 151 RGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188
RGFGF+TF + + VL H+L K ++ K + P+
Sbjct: 62 RGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPR 99
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 189 (71.6 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 104 DTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDA 163
D + T KIFVGG+ D+ GT+ DA ++ DK+TG+ RGFGF+T+DS DA
Sbjct: 237 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 296
Query: 164 ANNVLQTRFHKLKYKMVEVKRSHPKDRIDKFMNCYDCNNSN 204
+ V Q +F K + +E+KR+ P+ K N N N
Sbjct: 297 VDRVCQNKFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNGGN 337
Score = 183 (69.5 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 33/78 (42%), Positives = 55/78 (70%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG++ +T E+ LREYF +YGTV + I++ TG RGFGF+ F K S ++ ++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 68 KHHVILGKEVEVKKAIPK 85
+H ++ GK ++ K+AIP+
Sbjct: 220 QH-ILDGKVIDPKRAIPR 236
Score = 159 (61.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 30/96 (31%), Positives = 56/96 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ + + E+FSQ+GT+ + ++ + TG RGFGFV + + Q+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDD 103
K +++E+K+A P+ H ++S+ + GN G++
Sbjct: 304 KFIDFKDRKIEIKRAEPR-HMQQKSSNNGGNNGGNN 338
Score = 154 (59.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 32/83 (38%), Positives = 49/83 (59%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL D GTVTD ++ D TGR RGFGF++F+ + + V++T
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 171 RFHKLKYKMVEVKRSHPKDRIDK 193
+ H L K+++ KR+ P+D DK
Sbjct: 220 Q-HILDGKVIDPKRAIPRDEQDK 241
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 64/182 (35%), Positives = 96/182 (52%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+ ++LR+YF ++G + E +++R T RGFGF+ F +S + L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
HH + K ++ K A P+ TKKIFVGGL
Sbjct: 82 PHHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSASTVVEDVK 127
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF++ED V + FH++ KMVE K++ P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKAQP 187
Query: 188 KD 189
K+
Sbjct: 188 KE 189
Score = 163 (62.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G VE+ +++ + T RGFGFV F + E +
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 103 DDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSED 162
+D++ + K+F+GGL G + + V+ D T R RGFGFITF
Sbjct: 14 NDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVS 73
Query: 163 AANNVLQTRFHKLKYKMVEVKRSHPK 188
+ + VL H+L K ++ K + P+
Sbjct: 74 SVDKVLAQPHHELDSKTIDPKVAFPR 99
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 69/182 (37%), Positives = 96/182 (52%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T +E LREYF Q+G V+E L++R LT RGFGFV F + + L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + K ++ K A P+ TKKIFVGGL ++
Sbjct: 81 SRHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVK 126
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
V DA ++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ P
Sbjct: 127 QYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Query: 188 KD 189
K+
Sbjct: 187 KE 188
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+ V++ +++ + T RGFGFV F + E +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 65/182 (35%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+ ++LR+YFS++G + E +++R T RGFGFV F + + L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
HH + K ++ K A P+ TKKIFVGGL +
Sbjct: 82 PHHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSANTVVEDVK 127
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF++ED V + FH++ KMVE K++ P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Query: 188 KD 189
K+
Sbjct: 188 KE 189
Score = 163 (62.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G VE+ +++ + T RGFGFV F + E +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 91 ESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRP 150
E+NG G +D++ + K+F+GGL G + + V+ D T R
Sbjct: 2 EANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
Query: 151 RGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188
RGFGF+TF + + VL H+L K ++ K + P+
Sbjct: 62 RGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 65/182 (35%), Positives = 97/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+ ++LR+YFS++G + E +++R T RGFGFV F + + L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
HH + K ++ K A P+ TKKIFVGGL +
Sbjct: 82 PHHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSANTVVEDVK 127
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF++ED V + FH++ KMVE K++ P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Query: 188 KD 189
K+
Sbjct: 188 KE 189
Score = 163 (62.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G VE+ +++ + T RGFGFV F + E +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 91 ESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRP 150
E+NG G +D++ + K+F+GGL G + + V+ D T R
Sbjct: 2 EANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
Query: 151 RGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188
RGFGF+TF + + VL H+L K ++ K + P+
Sbjct: 62 RGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 306 (112.8 bits), Expect = 4.6e-27, P = 4.6e-27
Identities = 68/189 (35%), Positives = 107/189 (56%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
LRKLF+GG++ T EE L+ ++ Q+G V + +++R T RGFGF+ +TK M + A
Sbjct: 31 LRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ 90
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXX 125
+++ H+I GK VE K+A+P+ + ES +T I+ KK+FVGGL +
Sbjct: 91 ENRPHIIDGKTVEAKRALPRPER--ESR----------ETNISVKKLFVGGLKDNHDEEC 138
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G V ++ DK TG+ RGF F+ FD DA + + + H +KY V+VK+S
Sbjct: 139 LREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKS 198
Query: 186 -HPKDRIDK 193
+ D+ +K
Sbjct: 199 IYNLDKKEK 207
Score = 167 (63.8 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 38/98 (38%), Positives = 53/98 (54%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
+S++KLFVGG+ +EE LREYF Q+G V ++ + TG RGF FV F +
Sbjct: 120 ISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDK 179
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESN-GHSGNCV 100
A+ K H I V+VKK+I K E+ G N +
Sbjct: 180 AILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAI 217
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 281 (104.0 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 28 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 87
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 88 DAAMSARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 135
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 136 EEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 195
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 196 VKKALSKQEM 205
Score = 37 (18.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 233 YGSPSAGRGG 242
YG+P G GG
Sbjct: 296 YGNPGGGYGG 305
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 281 (104.0 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 16 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 76 DAAMSARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 124 EEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 183
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 184 VKKALSKQEM 193
Score = 37 (18.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 233 YGSPSAGRGG 242
YG+P G GG
Sbjct: 226 YGNPGGGYGG 235
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 72/193 (37%), Positives = 103/193 (53%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
LRK+F+GG+S +T ETLR +FSQ+G V + +++R ++ H RGFGFV + E
Sbjct: 31 LRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQ 90
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTE---INTKKIFVGGLPLDIX 122
+ + H I K VE K A+P+ + G G+ VG E +N+K+IF+GGL
Sbjct: 91 RARPHTIDNKIVETKHALPR-QDFKRGGG-VGSVVGSFGCEAGFMNSKRIFLGGLKEYHD 148
Query: 123 XXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEV 182
G V ++ D+ETGR R FGF+ F +A L R H + +VEV
Sbjct: 149 ENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEV 208
Query: 183 KRSHPK-DRIDKF 194
KRS K DR +F
Sbjct: 209 KRSTQKADRRFRF 221
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 64/187 (34%), Positives = 105/187 (56%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP +RKLF+GG+ T +E L+ +F ++G + + ++++ T RGFGF+ ++ SM
Sbjct: 26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
++A + + H I G+ VE K+A+P+ ++ N +G V KK+FVG L D
Sbjct: 86 DEAQKSRPHKIDGRVVEPKRAVPR-QDIDSPN--AGATV---------KKLFVGALKDDH 133
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + D ++ DKETG+ RGF F+ FD D + V+ + H+L KMV+
Sbjct: 134 DEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVD 193
Query: 182 VKRSHPK 188
VK++ PK
Sbjct: 194 VKKALPK 200
Score = 165 (63.1 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDA 64
+++KLFVG + + +E+++R+YF +G + + I+ + TG RGF FV F +
Sbjct: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKV 179
Query: 65 LQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K H + GK V+VKKA+PK + + G G
Sbjct: 180 VLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRG 212
Score = 150 (57.9 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 35/102 (34%), Positives = 51/102 (50%)
Query: 92 SNGHSGNCVGDDDTEI-NTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRP 150
SNGH + D TE + +K+F+GGL G + D V+ D T R
Sbjct: 12 SNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRS 71
Query: 151 RGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDRID 192
RGFGFIT+ + ++R HK+ ++VE KR+ P+ ID
Sbjct: 72 RGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDID 113
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 64/181 (35%), Positives = 96/181 (53%)
Query: 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68
+F+GG+S +T+ ++LR+YFS++G + E +++R T RGFGFV F + + L
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 69 HHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXX 128
HH + K ++ K A P+ TKKIFVGGL +
Sbjct: 61 HHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGLSANTVVEDVKQ 106
Query: 129 XXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188
G V DA ++ DK T R RGFGF+TF++ED V + FH++ KMVE K++ PK
Sbjct: 107 YFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 166
Query: 189 D 189
+
Sbjct: 167 E 167
Score = 163 (62.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G VE+ +++ + T RGFGFV F + E +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 148 IHFHEINNKMVECKKAQPK 166
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 64/182 (35%), Positives = 98/182 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T +E L++YF ++G V+E++++R +T RGFGFV F + + L
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
H + K ++ K A P+ TKKIFVGGL ++
Sbjct: 81 TRHELDSKTIDPKVAFPRR--------------AQPKLVTRTKKIFVGGLSVNTTIEDVK 126
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V DA ++ DK T R RGFGF+TF++ED V + FH++ KMVE K++ P
Sbjct: 127 QYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 186
Query: 188 KD 189
K+
Sbjct: 187 KE 188
Score = 160 (61.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
Score = 122 (48.0 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 91 ESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRP 150
ES G N + D+ + K+F+GGL G V ++ V+ D T R
Sbjct: 2 ESEGSQSN-LSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRS 60
Query: 151 RGFGFITFDSEDAANNVL-QTRFHKLKYKMVEVKRSHPK 188
RGFGF+TF + + VL QTR H+L K ++ K + P+
Sbjct: 61 RGFGFVTFVDQAGVDKVLAQTR-HELDSKTIDPKVAFPR 98
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 66/191 (34%), Positives = 104/191 (54%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME L KLF+GG++ +T E LRE+F+ YGT+ + +++ + T R FGFV ++ +
Sbjct: 22 MENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEE 81
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
A+ A+ H + G VE+K+A+ + E + G KK+FVGGL D
Sbjct: 82 ADAAMAASPHAVDGNSVELKRAVSR-----EDSAKPG-------AHAKVKKLFVGGLKGD 129
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
+ G V A +I DK++G+ RGFGF+ F + DAA+ +FH ++ V
Sbjct: 130 VGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 189
Query: 181 EVKRSHPKDRI 191
EVK++ PK+ I
Sbjct: 190 EVKKAVPKEDI 200
Score = 179 (68.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 40/91 (43%), Positives = 54/91 (59%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KLFVGG+ + E L ++FSQ+G VE+ II + +G RGFGFV F A+ A
Sbjct: 118 VKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA 177
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHS 96
K H I G VEVKKA+PK ++ G S
Sbjct: 178 VVKFHPIQGHRVEVKKAVPK-EDIQAGGGGS 207
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 61/195 (31%), Positives = 104/195 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 12 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 71
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 72 DAAMAARPHTIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 119
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 120 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 179
Query: 182 VKRSHPKDRIDKFMN 196
V+++ + + + N
Sbjct: 180 VRKALSRQEMQEVQN 194
Score = 192 (72.6 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 38/94 (40%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 105 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 164
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E N SG
Sbjct: 165 IVLQKYHTINGHNAEVRKALSRQEMQEVQNSRSG 198
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 65/191 (34%), Positives = 104/191 (54%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME L KLF+GG++ +T+E LR +F +GT+ + +++ + T R FGFV ++ +
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
A+ A+ H + G VE+K+A+ + E + G KK+FVGGL D
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSR-----EDSARPG-------AHAKVKKLFVGGLKGD 113
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
+ GTV A +I DK++G+ RGFGF+ F + DAA+ +FH ++ V
Sbjct: 114 VAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 173
Query: 181 EVKRSHPKDRI 191
EVK++ PK+ I
Sbjct: 174 EVKKAVPKEDI 184
Score = 188 (71.2 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 42/93 (45%), Positives = 55/93 (59%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KLFVGG+ + E L E+FSQ+GTVE+ II + +G RGFGFV F A+ A
Sbjct: 102 VKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA 161
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
K H I G VEVKKA+PK + G G+
Sbjct: 162 VVKFHPIQGHRVEVKKAVPK-EDIHSGGGGGGS 193
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 65/191 (34%), Positives = 104/191 (54%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME L KLF+GG++ +T+E LR +F +GT+ + +++ + T R FGFV ++ +
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
A+ A+ H + G VE+K+A+ + E + G KK+FVGGL D
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSR-----EDSARPG-------AHAKVKKLFVGGLKGD 108
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
+ GTV A +I DK++G+ RGFGF+ F + DAA+ +FH ++ V
Sbjct: 109 VAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 168
Query: 181 EVKRSHPKDRI 191
EVK++ PK+ I
Sbjct: 169 EVKKAVPKEDI 179
Score = 188 (71.2 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 42/93 (45%), Positives = 55/93 (59%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KLFVGG+ + E L E+FSQ+GTVE+ II + +G RGFGFV F A+ A
Sbjct: 97 VKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA 156
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
K H I G VEVKKA+PK + G G+
Sbjct: 157 VVKFHPIQGHRVEVKKAVPK-EDIHSGGGGGGS 188
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 65/191 (34%), Positives = 104/191 (54%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME L KLF+GG++ +T+E LR +F +GT+ + +++ + T R FGFV ++ +
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
A+ A+ H + G VE+K+A+ + E + G KK+FVGGL D
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSR-----EDSARPG-------AHAKVKKLFVGGLKGD 113
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
+ GTV A +I DK++G+ RGFGF+ F + DAA+ +FH ++ V
Sbjct: 114 VAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 173
Query: 181 EVKRSHPKDRI 191
EVK++ PK+ I
Sbjct: 174 EVKKAVPKEDI 184
Score = 188 (71.2 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 42/93 (45%), Positives = 55/93 (59%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KLFVGG+ + E L E+FSQ+GTVE+ II + +G RGFGFV F A+ A
Sbjct: 102 VKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA 161
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
K H I G VEVKKA+PK + G G+
Sbjct: 162 VVKFHPIQGHRVEVKKAVPK-EDIHSGGGGGGS 193
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 65/191 (34%), Positives = 104/191 (54%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME L KLF+GG++ +T+E LR +F +GT+ + +++ + T R FGFV ++ +
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
A+ A+ H + G VE+K+A+ + E + G KK+FVGGL D
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSR-----EDSARPG-------AHAKVKKLFVGGLKGD 108
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
+ GTV A +I DK++G+ RGFGF+ F + DAA+ +FH ++ V
Sbjct: 109 VAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 168
Query: 181 EVKRSHPKDRI 191
EVK++ PK+ I
Sbjct: 169 EVKKAVPKEDI 179
Score = 186 (70.5 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 42/93 (45%), Positives = 55/93 (59%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KLFVGG+ + E L E+FSQ+GTVE+ II + +G RGFGFV F A+ A
Sbjct: 97 VKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA 156
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
K H I G VEVKKA+PK + G G+
Sbjct: 157 VVKFHPIQGHRVEVKKAVPK-EDIYSGGGGGGS 188
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 65/191 (34%), Positives = 103/191 (53%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME L KLF+GG++ +T+E LR +F +GT+ + +++ + T R FGFV ++ +
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
A+ A+ H + G VE+K+A+ + E + G KK+FVGGL D
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSR-----EDSARPG-------AHAKVKKLFVGGLKGD 108
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
+ G V A +I DK++G+ RGFGF+ F S DAA+ +FH ++ V
Sbjct: 109 VAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRV 168
Query: 181 EVKRSHPKDRI 191
EVK++ PK+ I
Sbjct: 169 EVKKAVPKEDI 179
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 61/195 (31%), Positives = 104/195 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET E++LR +F Q+G + + +++R RGFGFV ++ +S
Sbjct: 8 EPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEV 67
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E+SN + + KKIFVGG+ D
Sbjct: 68 DAAMTARPHKVDGRVVEPKRAVSR----EDSNKPGAH--------LTVKKIFVGGIKEDT 115
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ ++ TG+ RGF F+TFD D + ++ ++H + E
Sbjct: 116 EEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCE 175
Query: 182 VKRSHPKDRIDKFMN 196
V+++ PK + N
Sbjct: 176 VRKALPKQEMQSSSN 190
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 60/184 (32%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 111
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 112 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 171
Query: 182 VKRS 185
V+++
Sbjct: 172 VRKA 175
Score = 187 (70.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 157 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 190
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGK 92
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 60/184 (32%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Query: 182 VKRS 185
V+++
Sbjct: 184 VRKA 187
Score = 187 (70.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 169 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGK 104
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 60/184 (32%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Query: 182 VKRS 185
V+++
Sbjct: 184 VRKA 187
Score = 187 (70.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 169 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGK 104
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 60/184 (32%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Query: 182 VKRS 185
V+++
Sbjct: 184 VRKA 187
Score = 187 (70.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 169 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGK 104
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 60/184 (32%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 74
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 75 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 122
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 123 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 182
Query: 182 VKRS 185
V+++
Sbjct: 183 VRKA 186
Score = 187 (70.9 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 108 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 167
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 168 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 201
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGK 103
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 60/184 (32%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 15 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 74
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 75 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 122
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 123 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 182
Query: 182 VKRS 185
V+++
Sbjct: 183 VRKA 186
Score = 187 (70.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 108 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 167
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 168 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 201
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGK 103
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 66/190 (34%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E L KLFVGG++ +T + LR YF Q+G + + +++++ R FGFV ++ A
Sbjct: 3 EMEKLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEA 62
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + HV+ GK VEVK+A+ + E++ G + KKIFVGGL DI
Sbjct: 63 DAAMAARPHVVDGKNVEVKRAVAR----EDA--------GRPEALAKVKKIFVGGLKDDI 110
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + + VI DK+TG+ RGFGF+ F+ D+A+ + +FH + VE
Sbjct: 111 EEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVE 170
Query: 182 VKRSHPKDRI 191
VK++ K I
Sbjct: 171 VKKALTKQEI 180
Score = 183 (69.5 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 38/92 (41%), Positives = 60/92 (65%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++K+FVGG+ + E+ L E+FSQ+G +E++ +I + TG RGFGFV F A+ A+
Sbjct: 98 VKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV 157
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
K H+I G +VEVKKA+ K +++ + G G
Sbjct: 158 VLKFHMINGHKVEVKKALTK-QEIQAAGGARG 188
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 61/190 (32%), Positives = 102/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNTTPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H +K E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ PK +
Sbjct: 177 VRKALPKQEM 186
Score = 182 (69.1 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+PK S+ G
Sbjct: 162 IVIQKYHTVKGHNCEVRKALPKQEMASASSSQRG 195
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 60/184 (32%), Positives = 99/184 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + + ++H + E
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAE 183
Query: 182 VKRS 185
V+++
Sbjct: 184 VRKA 187
Score = 186 (70.5 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
K+H I G EV+KA+ + E + SG
Sbjct: 169 IFLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGK 104
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 59/184 (32%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S +T EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 111
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 112 EEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 171
Query: 182 VKRS 185
V+++
Sbjct: 172 VRKA 175
Score = 188 (71.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF++YG ++ II R +G RGFGFV F +
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 157 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 190
Score = 117 (46.2 bits), Expect = 0.00025, P = 0.00025
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL G +TD V+ D + R RGFGF+TF S + +
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGK 92
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 61/184 (33%), Positives = 99/184 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G V +I D+++G+ RGFGF TFD D + ++ ++H + E
Sbjct: 124 EEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAE 183
Query: 182 VKRS 185
V+++
Sbjct: 184 VRKA 187
Score = 183 (69.5 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG V+ II R +G RGFGF F +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 169 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGK 104
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 63/186 (33%), Positives = 103/186 (55%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
L KLFVGG++ +T ++ LR +F QYG + + ++++++ R FGFV ++ A+ A+
Sbjct: 9 LCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAM 68
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXX 125
+ H++ G VE+K+A+ + E++ G + KKIF+GGL DI
Sbjct: 69 SARPHILDGNNVELKRAVAR----EDA--------GKPEALAKVKKIFIGGLKDDIEEDH 116
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G V A VI DKETG+ RGFGF+ F+ D+A+ + +FH + VEVK++
Sbjct: 117 LRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKA 176
Query: 186 HPKDRI 191
K +
Sbjct: 177 LTKQEM 182
Score = 181 (68.8 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++K+F+GG+ + E+ LR+ FSQ+G VE+ +I + TG RGFGFV F A+ A+
Sbjct: 100 VKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV 159
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
K H+I G +VEVKKA+ K +++ + G
Sbjct: 160 VLKFHMINGHKVEVKKALTK-QEMQAAGSRGG 190
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVGGL + G +TD V+ +++ R R FGF+T+ S D A++ +
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 171 RFHKLKYKMVEVKRSHPKDRIDK 193
R H L VE+KR+ ++ K
Sbjct: 71 RPHILDGNNVELKRAVAREDAGK 93
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 60/184 (32%), Positives = 99/184 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ + H + E
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAE 183
Query: 182 VKRS 185
V+++
Sbjct: 184 VRKA 187
Score = 193 (73.0 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 38/94 (40%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ KHH I G EV+KA+ + E + SG
Sbjct: 169 IVLQKHHTINGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + G +TD V+ D + R RGFGF+TF S + +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R H + ++VE KR+ ++ K
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGK 104
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 60/192 (31%), Positives = 106/192 (55%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+ T ++ L+ +F ++G + + ++++ T RGFGF+ +++ M
Sbjct: 19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMI 78
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
++A + H I G+ VE K+A+P+ +++ N +G V KK+FVGGL D
Sbjct: 79 DNAQNARPHKIDGRTVEPKRAVPR-QEIDSPN--AGATV---------KKLFVGGLRDDH 126
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ DK+TG+ RGF FI FD D + ++ + H +K K ++
Sbjct: 127 DEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLD 186
Query: 182 VKRSHPKDRIDK 193
VK++ K +D+
Sbjct: 187 VKKAIAKQDMDR 198
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 59/184 (32%), Positives = 101/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E +RKLF+GG+S ET EE+L+ Y+ Q+G + + ++IR + RGFGFV F+ ++
Sbjct: 16 ENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ V+ K+A+ + E + G+ V N KK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVDPKRAVSR-----EKSEKQGSLV-------NVKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++G+ RGFGF+TFD D + ++ ++H + E
Sbjct: 124 EEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAE 183
Query: 182 VKRS 185
V ++
Sbjct: 184 VGKA 187
Score = 183 (69.5 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 37/91 (40%), Positives = 54/91 (59%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LREYF +YG ++ II R +G RGFGFV F +
Sbjct: 109 VNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNG 94
+ K+H I G EV KA+ + +++E G
Sbjct: 169 IMLQKYHAINGHRAEVGKALSR-QEMKEIQG 198
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 60/190 (31%), Positives = 101/190 (53%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
MEP +RKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 1 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
+ A+ + H + G+ VE K+A+ + E+S D + KKIFVGG+ D
Sbjct: 61 VDAAMNARPHKVNGRVVEPKRAVSR----EDSQR--------PDAYLTVKKIFVGGIKED 108
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
G ++ D+ +G+ RGF F+TFD D+ + ++ ++H +
Sbjct: 109 TEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNC 168
Query: 181 EVKRSHPKDR 190
EV+++ R
Sbjct: 169 EVRKAPSNQR 178
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 4 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 63
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 64 DAAMSARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 111
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 112 EEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 171
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 172 VKKALSKQEM 181
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 63/186 (33%), Positives = 102/186 (54%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
L KLFVGG++ +T +E LR +F QYG + + +++ ++ R FGFV ++ A+ A+
Sbjct: 5 LCKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAM 64
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXX 125
+ H++ G V++K+A+ + E++ G + KKIFVGGL DI
Sbjct: 65 SARPHIVDGNNVDLKRAVAR----EDA--------GKPEMLAKVKKIFVGGLKDDIEDEH 112
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G + A VI DK+TG+ RGFGF+ FD D+A+ + +FH + VEVK++
Sbjct: 113 LQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKA 172
Query: 186 HPKDRI 191
K +
Sbjct: 173 LTKQEM 178
Score = 189 (71.6 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 38/92 (41%), Positives = 59/92 (64%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++K+FVGG+ + +E L++YFSQ+G +E+ +I + TG RGFGFV F A+ A+
Sbjct: 96 VKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAV 155
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
K H I G +VEVKKA+ K +++ + G G
Sbjct: 156 VMKFHSICGHKVEVKKALTK-QEMQSTGGGRG 186
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 60/196 (30%), Positives = 106/196 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV ++ +
Sbjct: 33 EPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEV 92
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + + HS KK+FVGG+ D
Sbjct: 93 DAAMDARPHKVDGRAVEPKRAVSREDS-SKPGAHS-----------TVKKMFVGGIKEDT 140
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + + ++ +K + + RGF FITFD DA + ++ ++H + E
Sbjct: 141 DEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCE 200
Query: 182 VKRSHPKDRIDKF-MN 196
V+++ ++ +++ MN
Sbjct: 201 VRKALSREEMNRVSMN 216
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 58/184 (31%), Positives = 102/184 (55%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E +RKLF+GG+S +T EE+LR+Y+ Q+G + + +++R + RG GFV F+ ++
Sbjct: 4 EAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEV 63
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ +E ++AIP+ E++G G KK+FVGG+ D
Sbjct: 64 DAAMAARPHSIDGRVLEPRRAIPR-----EASGQRG-------AHWTLKKLFVGGIKEDT 111
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + +I D+++GR RGFGF+TFD D + ++ ++H + E
Sbjct: 112 EEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAE 171
Query: 182 VKRS 185
V+++
Sbjct: 172 VRKA 175
Score = 181 (68.8 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDA 64
+L+KLFVGG+ +T E LREYF +YG ++ II R +G RGFGFV F +
Sbjct: 98 TLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKI 157
Query: 65 LQHKHHVILGKEVEVKKAI 83
+ K+H I G EV+KA+
Sbjct: 158 VLQKYHAINGHHAEVRKAL 176
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/184 (33%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+ ET EE+LR Y+ Q+G + + ++IR + RGFGFVIF+ ++
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ V K+ +P+ EES G G CV TKK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPR----EES-GKPGACV-------TTKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
GT+ +I +++GR FGF+TFD D + ++ ++H + +
Sbjct: 124 TERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQ 181
Query: 182 VKRS 185
++++
Sbjct: 182 LEKA 185
Score = 163 (62.4 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 37/103 (35%), Positives = 57/103 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+ +KLFVGG+ +T E LR+YF +YGT++ IIR +G FGFV F +
Sbjct: 109 VTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDK 166
Query: 64 ALQHKHHVILGKEVEVKKAIPK-G-HKLEESNGHSGNCVGDDD 104
+ K+H I G +++KA+ + G +++ S G VG D
Sbjct: 167 IVLQKYHTINGHHAQLEKALSRQGMQEVQSSRRRRGRHVGFGD 209
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/184 (33%), Positives = 100/184 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E RKLF+GG+ ET EE+LR Y+ Q+G + + ++IR + RGFGFVIF+ ++
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H I G+ V K+ +P+ EES G G CV TKK+FVGG+ D
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPR----EES-GKPGACV-------TTKKLFVGGIKEDT 123
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
GT+ +I +++GR FGF+TFD D + ++ ++H + +
Sbjct: 124 TERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQ 181
Query: 182 VKRS 185
++++
Sbjct: 182 LEKA 185
Score = 161 (61.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 37/103 (35%), Positives = 57/103 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+ +KLFVGG+ +T E LR+YF +YGT++ IIR +G FGFV F +
Sbjct: 109 VTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDK 166
Query: 64 ALQHKHHVILGKEVEVKKAIPK-G-HKLEESNGHSGNCVGDDD 104
+ K+H I G +++KA+ + G +++ S G VG D
Sbjct: 167 IVLQKYHTINGHHAQLEKALSRQGMQEVQSSRRGRGRHVGFGD 209
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 137
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 198 VKKALSKQEM 207
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 137
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 198 VKKALSKQEM 207
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 67
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 68 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 115
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 116 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 175
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 176 VKKALSKQEM 185
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 137
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 198 VKKALSKQEM 207
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 137
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 198 VKKALSKQEM 207
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 137
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 198 VKKALSKQEM 207
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 137
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 198 VKKALSKQEM 207
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 67
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 68 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 115
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 116 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 175
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 176 VKKALSKQEM 185
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 89
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 90 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 137
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 138 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 197
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 198 VRKALSKQEM 207
Score = 173 (66.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 123 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 182
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 183 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 216
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 28 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 87
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 88 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 135
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 136 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 195
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 196 VRKALSKQEM 205
Score = 173 (66.0 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 121 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 180
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 181 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 214
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 173 (66.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 58/184 (31%), Positives = 99/184 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRS 185
V+++
Sbjct: 177 VRKA 180
Score = 171 (65.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALCKQEMASASSSQRG 195
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 64/169 (37%), Positives = 86/169 (50%)
Query: 21 ETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVK 80
E LREYF Q+G V+E L++R LT RGFGFV F + + L H + K ++ K
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 81 KAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAP 140
A P+ TKKIFVGGL ++ G V DA
Sbjct: 61 VAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAM 106
Query: 141 VICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKD 189
++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ PK+
Sbjct: 107 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 155
Score = 159 (61.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E ++ YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 136 IHFHEINNKMVECKKAQPK 154
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 58/190 (30%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD ++ + ++ ++H + E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCE 176
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 177 VRKALSKQEM 186
Score = 174 (66.3 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F + +
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 59/189 (31%), Positives = 101/189 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+GG+S ET EE+LR Y+ Q+G + + +++R + RGFGFV F+ ++ + A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H I G+ VE K+A+ + EES G + KK+FVGG+ D
Sbjct: 70 RPHSIDGRVVEPKRAVAR----EES--------GKPGAHVTVKKLFVGGIKEDTEEHHLR 117
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G + +I D+++G+ RGFGF+TFD D + ++ ++H EV+++
Sbjct: 118 DYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKALS 176
Query: 188 KDRIDKFMN 196
+ + + N
Sbjct: 177 RQEMQEVQN 185
Score = 178 (67.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDK 155
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H G EV+KA+ + E N SG
Sbjct: 156 IVLQKYHTKNGHNAEVRKALSRQEMQEVQNSRSG 189
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 63/169 (37%), Positives = 85/169 (50%)
Query: 21 ETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVK 80
E LREYF Q+G +E L++R LT RGFGFV F + + L H + K ++ K
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 81 KAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAP 140
A P+ TKKIFVGGL ++ G V DA
Sbjct: 61 VAFPRR--------------AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAM 106
Query: 141 VICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKD 189
++ DK T R RGFGF+TF+SED V + FH++ KMVE K++ PK+
Sbjct: 107 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 155
Score = 161 (61.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 136 IHFHEINNKMVECKKAQPK 154
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKL +GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++ +
Sbjct: 3 EPEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 62
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 63 DAAVCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 110
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D ++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 111 EEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCE 170
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 171 VKKALSKQEM 180
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 60/190 (31%), Positives = 102/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV ++
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYS-CEEV 66
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 67 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 114
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + ++ ++H + E
Sbjct: 115 GEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 174
Query: 182 VKRSHPKDRI 191
VK++ K +
Sbjct: 175 VKKALSKQEM 184
Score = 179 (68.1 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 39/113 (34%), Positives = 58/113 (51%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF +YG +E ++ R +G RGF FV F +
Sbjct: 100 LTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 159
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGG 116
+ K+H I G EVKKA+ K +S G C G + F GG
Sbjct: 160 IVVQKYHTINGHNCEVKKALSKQEM--QSAGSQRGCGGGSGNFMGHGGNFGGG 210
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 269 (99.8 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 59/190 (31%), Positives = 100/190 (52%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME KLFVGG+S ET +E L YF ++G + + +++++ +G RGFGFV F +
Sbjct: 1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKG-HKLEESNGHSGNCVGDDDTEINTKKIFVGGLPL 119
LQ+ H + G+ ++ K P+ K ++ G+ K+F+GGLP
Sbjct: 61 VNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGY---------------KVFLGGLPS 105
Query: 120 DIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKM 179
++ G VT+ ++ D+E + RGFGF++F+ E + +V R+ L K
Sbjct: 106 NVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQ 165
Query: 180 VEVKRSHPKD 189
VE+K++ P+D
Sbjct: 166 VEIKKAEPRD 175
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 60/187 (32%), Positives = 98/187 (52%)
Query: 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDA 64
SL + +G + +T+E LR +F +GT+ + +++ + T R FGFV ++ + A+ A
Sbjct: 5 SLCGVLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 65 LQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXX 124
+ H + G VE+K+A+ + E + G KK+FVGGL D+
Sbjct: 65 MAASPHAVDGNTVELKRAVSR-----EDSARPG-------AHAKVKKLFVGGLKGDVAEG 112
Query: 125 XXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184
G V A +I DK++G+ RGFGF+ F S DAA+ +FH ++ VEVK+
Sbjct: 113 DLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKK 172
Query: 185 SHPKDRI 191
+ PK+ I
Sbjct: 173 AVPKEDI 179
Score = 184 (69.8 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 41/93 (44%), Positives = 54/93 (58%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KLFVGG+ + E L E+FSQ+G VE+ II + +G RGFGFV F A+ A
Sbjct: 97 VKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAA 156
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
K H I G VEVKKA+PK + G G+
Sbjct: 157 VVKFHPIQGHRVEVKKAVPKEDIVARCGGGGGS 189
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 59/191 (30%), Positives = 101/191 (52%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
MEP +RKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 4 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 63
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
+ A+ + H + G+ VE K+A+ +E+S G +N K IFVG + D
Sbjct: 64 VDAAMNARPHKVDGRVVEPKRAV----SIEDSQ-RPG-------AYLNMK-IFVGAIKED 110
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
G ++ D+ +G+ RGF F+TFD D+ + ++ ++H +
Sbjct: 111 TEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNC 170
Query: 181 EVKRSHPKDRI 191
EV+++ K +
Sbjct: 171 EVRKAPSKQEM 181
Score = 162 (62.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 37/104 (35%), Positives = 50/104 (48%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVG + +T E LR+YF QYG E I+ R +G RGF FV F + +
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGH-----SGNCVGDDDTE 106
K+H + G EV+KA K S+ SGNC D +
Sbjct: 161 KYHTVNGHNCEVRKAPSKQEMASASSSQRGRSGSGNCYNGIDND 204
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 264 (98.0 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 58/190 (30%), Positives = 103/190 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LR +F Q+GT+ + ++++ T RGFGFV ++ +
Sbjct: 28 EPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEV 87
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
++ + H + G+ VE K+A+ + E+S+ + T + KKIFVGG+ D
Sbjct: 88 NASMDARPHKVDGRLVEPKRAVSR----EDSSKPFAH------TTV--KKIFVGGIKDDT 135
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D +TG RGF F+TFD D+ + ++ ++H + E
Sbjct: 136 EENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCE 195
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 196 VRKALSKQEM 205
Score = 167 (63.8 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDA 64
+++K+FVGG+ +T E LR+YF Q+G +E I+ TG+ RGF FV F +
Sbjct: 122 TVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRI 181
Query: 65 LQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K G G
Sbjct: 182 VIQKYHTVNGHNCEVRKALSKQEMANTGRGGGG 214
Score = 144 (55.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + GT+TD V+ D T R RGFGF+T+ S D N +
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 170 TRFHKLKYKMVEVKRSHPKDRIDK 193
R HK+ ++VE KR+ ++ K
Sbjct: 93 ARPHKVDGRLVEPKRAVSREDSSK 116
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 157 (60.3 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 61 KEHRLDGRLIDPKKAM 76
Score = 149 (57.5 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV +K+FVGG++ E EE +REYF ++G +E + T RGF F+ F +
Sbjct: 81 DPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPV 138
Query: 62 EDALQHKHHVILGKEVEVKKAIPK 85
+ L+ K H + G + E+K A PK
Sbjct: 139 KKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 133 (51.9 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVGGL D G VTD + D TGR RGFGFI F + VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 171 RFHKLKYKMVEVKRSHP--KDRIDK 193
+ H+L ++++ K++ KD + K
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKK 85
Score = 126 (49.4 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D +T + RGF FITF ED VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 144 KKFHNVSGSKCEIKVAQPKE 163
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 52/178 (29%), Positives = 94/178 (52%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+GG+ T E++LR Y+ Q+G + + +++R RGFGFV F+ ++ + A+
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + GK V+ K+A+ + + E+ H + KK+FVGG+ D
Sbjct: 82 RPHSVDGKVVDPKRAVAR-EESEKPGAH-----------LAVKKLFVGGIKEDTEEHHLR 129
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G + +I D+++G+ RGFGF+TFD D + ++ ++H + EV ++
Sbjct: 130 DYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKA 187
Score = 177 (67.4 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 109 LAVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV KA+ + E + SG
Sbjct: 169 IVLQKYHTINGHHAEVGKALSRQEMQEVQSSTSG 202
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL G +TD V+ D R RGFGF+TF S + +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 171 RFHKLKYKMVEVKRSHPKDRIDK 193
R H + K+V+ KR+ ++ +K
Sbjct: 82 RPHSVDGKVVDPKRAVAREESEK 104
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 56/178 (31%), Positives = 94/178 (52%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+G +S ET EE+L Y+ Q+G + + ++IR + R FGF+ F+ ++ + A+
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H I GK V K+A+P+ E +G G I KK+FVGG+ D+
Sbjct: 82 RPHFIDGKMVMPKRAVPR-----EDHGKLGAL-------ITVKKLFVGGITEDMKEHHLR 129
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G + ++ D ++G+ RGFGFITFD D + ++ + H + EV+++
Sbjct: 130 DYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKA 187
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++KLFVGG++ + E LR+YF +YG + I+ +G RGFGF+ F +
Sbjct: 109 ITVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDK 168
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLE 90
+ K+H I G EV+KA+ + + E
Sbjct: 169 IVLQKNHTINGHRAEVRKALSRQERQE 195
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 56/189 (29%), Positives = 95/189 (50%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAE 62
P L+KLF+GG S ET +E+LR +F Q G + + +++R T RGFGFV +T + +
Sbjct: 10 PEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVD 69
Query: 63 DALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIX 122
A+ + H + G+ VE K+ K E + G + KKIF GG+ D
Sbjct: 70 PAMHARPHKVDGRVVEPKRTSSK-----EDSQRPG-------AHLTVKKIFAGGIKEDTE 117
Query: 123 XXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEV 182
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + EV
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEV 177
Query: 183 KRSHPKDRI 191
+++ K +
Sbjct: 178 RKALSKQEM 186
Score = 165 (63.1 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+F GG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 102 LTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEES---NGHSGN 98
+ K+H + G EV+KA+ K S G SG+
Sbjct: 162 IVIQKYHTVNGHNWEVRKALSKQEMASASCSQRGQSGS 199
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 161 (61.7 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
RK F+GG+S +T EE L +F +YG + + I++ TG RGFGF+ F + + DAL
Sbjct: 162 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFED-AKSVDALL 220
Query: 67 HKHHVILGKEVEVKKAIPK 85
HV+ GK ++ K+AI K
Sbjct: 221 KDRHVLDGKLIDPKRAISK 239
Score = 155 (59.6 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 100 VGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFD 159
+ +D E KIFVGG+ + G + D ++ DK+TGR RGFGF+T+D
Sbjct: 237 ISKEDQE-KVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYD 295
Query: 160 SEDAANNVLQTRFHKLKYKMVEVKRSHPK 188
S A + V ++ LK K +EVKR+ P+
Sbjct: 296 SPAAVDKVCVNKYLTLKGKAMEVKRAAPR 324
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ EE +FSQ+G + + ++ + TG RGFGFV + + + +
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 68 KHHVILGKEVEVKKAIPKG 86
K+ + GK +EVK+A P+G
Sbjct: 307 KYLTLKGKAMEVKRAAPRG 325
Score = 133 (51.9 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 109 TKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
++K F+GGL D G + D ++ D TGR RGFGF+TF+ + + +L
Sbjct: 161 SRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALL 220
Query: 169 QTRFHKLKYKMVEVKRSHPKDRIDK 193
+ R H L K+++ KR+ K+ +K
Sbjct: 221 KDR-HVLDGKLIDPKRAISKEDQEK 244
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 60/197 (30%), Positives = 102/197 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFS-------QYGTVEETLIIRSRLTGHGRGFGFVI 54
EP LRKLF+GG+S ET +++LRE+F ++GT+ + +++R T RGFGFV
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVT 67
Query: 55 FTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFV 114
++ + A+ + H + G+ VE K+A+ + E + G + KKIFV
Sbjct: 68 YS-CEEVDAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFV 114
Query: 115 GGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHK 174
GG+ D G + V+ D+++G+ RGF F+TFD D + ++ ++H
Sbjct: 115 GGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT 174
Query: 175 LKYKMVEVKRSHPKDRI 191
+ EVK++ K +
Sbjct: 175 INGHNCEVKKALSKQEM 191
Score = 179 (68.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 39/113 (34%), Positives = 58/113 (51%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF +YG +E ++ R +G RGF FV F +
Sbjct: 107 LTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 166
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGG 116
+ K+H I G EVKKA+ K +S G C G + F GG
Sbjct: 167 IVVQKYHTINGHNCEVKKALSKQEM--QSAGSQRGCGGGSGNFMGHGGNFGGG 217
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 56/190 (29%), Positives = 98/190 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L KLF+GG+S +T +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 2 EPEQLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVG D
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSR-----EDSRRPG-------AHLTVKKIFVGE---DT 106
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 107 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 166
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 167 VRKALSKQEM 176
Score = 151 (58.2 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVG +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 95 LTVKKIFVG---EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 151
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 152 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 185
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 57/190 (30%), Positives = 99/190 (52%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L KLF+GG+S ET EE+LR +F Q+GT + +++R T RG GF+++ +
Sbjct: 9 EPEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + HV G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPHVD-GRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 115
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ +GF F+TFD D+ + ++ ++H + E
Sbjct: 116 EEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCE 174
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 175 VRKALSKQEM 184
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 215 (80.7 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 50/171 (29%), Positives = 88/171 (51%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAE 62
P LRKLF+GG+S +T E+LR +F Q+ T+ + + +R T RGFGFV +T + +
Sbjct: 1 PEQLRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVD 60
Query: 63 DALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIX 122
A+ + H + G VE K+A+ + E+S + + K+I VGG+ D
Sbjct: 61 AAMNARPHKVDGSFVEPKRAVSR----EDSQSPGAH--------LTVKEISVGGIKEDTE 108
Query: 123 XXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFH 173
G + ++ D+ +G+ + F F+TFD D+ + ++ ++H
Sbjct: 109 EHHLRDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQKYH 158
Score = 116 (45.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++++ VGG+ +T E LR+YF YG +E I+ R +G + F FV F +
Sbjct: 93 LTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDK 151
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G E A+ K S+ G
Sbjct: 152 IVIQKYHTVNGHNCETV-ALSKQEMASASSSQRG 184
Score = 111 (44.1 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL T+TD + D T R RGFGF+T+ + + + +
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 170 TRFHKLKYKMVEVKRS 185
R HK+ VE KR+
Sbjct: 65 ARPHKVDGSFVEPKRA 80
Score = 46 (21.3 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 260 GYCNGSFHQMAESTADGSNSTGDHASG 286
GYC GS + DG+ +G SG
Sbjct: 197 GYCEGSRGYGSGGQGDGNQGSGYGGSG 223
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 58/190 (30%), Positives = 102/190 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L+KLF+GG+S ET +E+LR +F ++GT+ +++R T RGFGFV + +
Sbjct: 9 EPEQLQKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEV 67
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E+S D + KKIFVGG+ +
Sbjct: 68 DAAMNARPHKVDGRVVEPKRAVSR----EDSQTL--------DAHLTVKKIFVGGIKEN- 114
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++Q ++H + E
Sbjct: 115 -TEDHLRDYFEYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQ-KYHTVNGHNCE 172
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 173 VRKALSKQEM 182
Score = 151 (58.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +E E+ LR+YF +YG +E I+ R +G RGF FV F +
Sbjct: 101 LTVKKIFVGGI-KENTEDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDK 158
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHS 96
+Q K+H + G EV+KA+ K S+ S
Sbjct: 159 IIQ-KYHTVNGHNCEVRKALSKQEMASASSSQS 190
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 98 NCVGDDDTEINT-KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
+C+ E +K+F+GGL + GT+T V+ D T R RGFGF+
Sbjct: 1 SCLSQSPKEPEQLQKLFIGGLSFE-TTDESLRSHFEWGTLTGCVVMRDPNTKRSRGFGFV 59
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
T+ + + + + R HK+ ++VE KR+
Sbjct: 60 TYATVEEVDAAMNARPHKVDGRVVEPKRA 88
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 59/191 (30%), Positives = 98/191 (51%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
+EP LRKLF+GG+S ET E+LR +F Q+G + + +++R T H RGFGFV + +
Sbjct: 8 IEPEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKE 67
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
+ A HK + G+ VE K+A+ + E + G + +KIFVGG+ D
Sbjct: 68 VDAARSHK---VDGRVVEPKRAVSR-----EDSQRPG-------AHLTVRKIFVGGIKED 112
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
G + ++ D+ +G+ RGF +TFD D V+Q +++ +
Sbjct: 113 TEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQ-KYYIVNGHNC 171
Query: 181 EVKRSHPKDRI 191
EV+++ K +
Sbjct: 172 EVRKALSKQEM 182
Score = 163 (62.4 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
+++RK+FVGG+ +T E LR+YF QYG +E I+ R +G RGF V F +
Sbjct: 99 LTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKI 158
Query: 64 ALQHKHHVILGKEVEVKKAIPKGH--KLEESNGHSGN 98
+Q K++++ G EV+KA+ K S G SG+
Sbjct: 159 VIQ-KYYIVNGHNCEVRKALSKQEMASASSSRGRSGS 194
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 54/172 (31%), Positives = 89/172 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+G +S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAAMNARPQKVNGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKED- 115
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFH 173
G ++ D+ G+ RGF F+TFD D+ + ++ ++H
Sbjct: 116 TEHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYH 167
Score = 144 (55.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG E I+ R G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDT-EHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDK 160
Query: 64 ALQHKHHVILGK--EVEVKKAIPKGHKLEESNGHSGN 98
+ K+H + G E VK+ + + SGN
Sbjct: 161 IVIQKYHTVNGHNCETRVKQDMASASSSQRGRSGSGN 197
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+G L + GT+TD V+ D T R RGFGF+T+ + + + +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 TRFHKLKYKMVEVKRS 185
R K+ ++VE KR+
Sbjct: 74 ARPQKVNGRVVEPKRA 89
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 54/186 (29%), Positives = 97/186 (52%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
L KLF+ G+S ET +E+LR +F ++GT+ + +++R T RGFGFV +T + + A+
Sbjct: 6 LWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAM 65
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXX 125
+ H + G+ VE K+A+ + E + G + KKIFVG + D
Sbjct: 66 NARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGSIKEDTEEHH 113
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + EV+++
Sbjct: 114 LREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
Query: 186 HPKDRI 191
K +
Sbjct: 174 LSKQEM 179
Score = 168 (64.2 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVG + +T E LREYF QYG +E I+ R +G RGF FV F +
Sbjct: 95 LTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDK 154
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 155 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 188
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 164 (62.8 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
RKLFVGG+S ET E+ LR++F +YG +E + TG RGF F++FT +
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 67 HKHHVILGKEVEVKKAIPKGHKL 89
H+I K+V+ KKA + K+
Sbjct: 116 ADEHIINSKKVDPKKAKARHGKI 138
Score = 142 (55.0 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG++ E ++E ++ YF Q+G + E + + +GF F+ F + D L+
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 68 KHHVILGKEVEVKKAIPK 85
I GKEV+VK+A PK
Sbjct: 197 PKQKIAGKEVDVKRATPK 214
Score = 137 (53.3 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
KIFVGGL +I G + + + DK+ + +GF FITFDSE ++L+T
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 171 RFHKLKYKMVEVKRSHPK 188
K+ K V+VKR+ PK
Sbjct: 197 PKQKIAGKEVDVKRATPK 214
Score = 112 (44.5 bits), Expect = 0.00094, P = 0.00094
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 92 SNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPR 151
+NG S N + +K+FVGGL + G + V D +TGR R
Sbjct: 38 TNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSR 97
Query: 152 GFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
GF FI F + +A + V H + K V+ K++
Sbjct: 98 GFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 55/186 (29%), Positives = 96/186 (51%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
LRKLF+GG+S ET +E+LR +F Q+G + + +++ T RGFGFV +T + + A+
Sbjct: 22 LRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMDPN-TKRSRGFGFVTYTTVEEVDAAM 80
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXX 125
+ + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 81 NARPQKMDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDTEEHH 128
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H EV+++
Sbjct: 129 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKA 188
Query: 186 HPKDRI 191
K +
Sbjct: 189 LSKQEM 194
Score = 166 (63.5 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 110 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 169
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H G EV+KA+ K S+ G
Sbjct: 170 IVIQKYHTGNGHNCEVRKALSKQEMASASSSQRG 203
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 60/190 (31%), Positives = 97/190 (51%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAE 62
P LRKLF+GG+S +T +E L YFSQ+G V + ++IR T H RGFGFV F I AE
Sbjct: 66 PPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAE 125
Query: 63 DALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIX 122
A+ + H + GK V+ K+AIP+ E+ + + D K + + G+ +
Sbjct: 126 SAMNDRPHKLGGKTVDSKRAIPR----EQMSSMIPPPFFETDPAPGCK-LLLNGITNGVH 180
Query: 123 XXXXXXXXXXX-GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL--QTRFHKLKYKM 179
GT+ ++ G+PRG GF+ ++ +++A+ L + H + +
Sbjct: 181 SVDSLRVYFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERK 235
Query: 180 VEVK--RSHP 187
+EV+ HP
Sbjct: 236 IEVRVFTKHP 245
Score = 143 (55.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 104 DTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDA 163
D+ +K+F+GGL D G V DA VI D T RGFGF+TF S +
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 164 ANNVLQTRFHKLKYKMVEVKRSHPKDRIDKFM 195
A + + R HKL K V+ KR+ P++++ +
Sbjct: 124 AESAMNDRPHKLGGKTVDSKRAIPREQMSSMI 155
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 238 (88.8 bits), Expect = 5.5e-20, P = 5.5e-20
Identities = 60/190 (31%), Positives = 97/190 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F + GT+ + +++R T H RGFGFV + +
Sbjct: 31 EPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEV 90
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 91 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLMVKKIFVGGIKEDT 138
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G T+ + + RGF F+TFD +D + ++ + H + E
Sbjct: 139 EEYNLRDYFEKYGK-TET-IEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCE 196
Query: 182 VKRSHPKDRI 191
VKR+ K +
Sbjct: 197 VKRALSKQEM 206
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 57/182 (31%), Positives = 96/182 (52%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET + +LRE+F ++GT+ + +++R RGF FV ++ +
Sbjct: 32 EPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEV 91
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ + H ++G VE K+A+ + E + G + +KIFVGG+ D
Sbjct: 92 GAVMCARPHKVVGCVVEPKRAVSR-----EDSIIPG-------AHLMVEKIFVGGIKEDT 139
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD+ D + V+Q ++H + E
Sbjct: 140 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQ-KYHTVNGHNCE 198
Query: 182 VK 183
VK
Sbjct: 199 VK 200
Score = 169 (64.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
+ K+FVGG+ +T E LR+YF +YG +E ++ R +G RGF FV F + +
Sbjct: 127 VEKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVV 186
Query: 66 QHKHHVILGKEVEVKKA-IPKGHKLEESNGHSGNCVG 101
Q K+H + G EVK+ +P G SGN +G
Sbjct: 187 Q-KYHTVNGHNCEVKEQEMPSAGSQRGHGGGSGNFMG 222
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 238 (88.8 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 60/190 (31%), Positives = 97/190 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F + GT+ + +++R T H RGFGFV + +
Sbjct: 31 EPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEV 90
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 91 DAAMCARPHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLMVKKIFVGGIKEDT 138
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G T+ + + RGF F+TFD +D + ++ + H + E
Sbjct: 139 EEYNLRDYFEKYGK-TET-IEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCE 196
Query: 182 VKRSHPKDRI 191
VKR+ K +
Sbjct: 197 VKRALSKQEM 206
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 58/191 (30%), Positives = 100/191 (52%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFV-IFTKISM 60
EP LRKLF+G +S ET +++LRE+F ++GT++ +++R R FGFV ++ +
Sbjct: 13 EPEQLRKLFIGCLSFETTDDSLREHFEKWGTLD-CVVMRDLQIKRSRSFGFVSTYSCVKE 71
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
+ A+ + H + G VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 72 VDAAMCARPHKVDGHVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKED 119
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
G + V+ D+++G+ RGF F+TFD D + ++Q ++H +
Sbjct: 120 TEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQ-KYHTINGHNY 178
Query: 181 EVKRSHPKDRI 191
EVK++ K +
Sbjct: 179 EVKKAVSKQEM 189
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF +YG +E ++ R +G RGF FV F +
Sbjct: 106 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDK 165
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESN--GHSGNCVG 101
+Q K+H I G EVKKA+ K + G GN G
Sbjct: 166 IVQ-KYHTINGHNYEVKKAVSKQEMQSAGSQRGRGGNFGG 204
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 55/184 (29%), Positives = 98/184 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L KLF+ G+S ET +E+LR +F Q+GT+ +++R T RGFGFV+F +
Sbjct: 9 EPEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + + + G+ +E K+ + + E+S + + KKIFVGG+ D
Sbjct: 69 DAAMNARPNKVNGRVLEPKRFVSR----EDSQRPAAY--------LTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
V + V+ D+ +G+ RGF F+TFD+ D+ + ++ ++H + E
Sbjct: 117 EEHEDYFEQYGKFEVIE--VMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCE 174
Query: 182 VKRS 185
V+++
Sbjct: 175 VRKA 178
Score = 144 (55.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E +YF QYG E ++ + +G RGF FV F +
Sbjct: 102 LTVKKIFVGGIKEDTEEH--EDYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQ 159
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEES---NGHSGN 98
+ K+H + G EV+KA+ K S G SG+
Sbjct: 160 IVIQKYHTVNGHSCEVRKALLKQEMASASFSQRGQSGS 197
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 53/183 (28%), Positives = 93/183 (50%)
Query: 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68
L +GG+S ET +++LRE+ ++GT+ + +++ T H RGFGFV ++ + + A+
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 69 HHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXX 128
H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 61 PHKVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDTEEYNLRD 108
Query: 129 XXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188
G + V+ D+++G+ RGF F+TFD D + ++ H + EVK++ K
Sbjct: 109 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSK 168
Query: 189 DRI 191
+
Sbjct: 169 QEM 171
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF +YG +E ++ R +G RGF FV F +
Sbjct: 87 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 146
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESN---GH---SGNCVG 101
+ +HH I EVKKA+ K +++ + GH SGN +G
Sbjct: 147 IVFQEHHAINRHNCEVKKAVSK-QEMQSAGPQRGHGGGSGNFMG 189
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 54/190 (28%), Positives = 96/190 (50%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF GG++ ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 16 EPEQLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPV--- 72
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ + K H +E+ +A+ + E+S + + KKIFVGG+ D
Sbjct: 73 -EEVDRKDHTRWMEELWNLRAVSR----EDSQTPGAH--------LTVKKIFVGGIKEDT 119
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ GF F+TFD D+ + ++ ++H + E
Sbjct: 120 EEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 179
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 180 VRKALSKQEM 189
Score = 157 (60.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 34/98 (34%), Positives = 52/98 (53%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+Y QYG +E I+ R +G GF FV F +
Sbjct: 105 LTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDK 164
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEES---NGHSGN 98
+ K+H + G EV+KA+ K S G SG+
Sbjct: 165 IVIQKYHTVNGHNCEVRKALSKQEMASASFSQRGRSGS 202
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 51/178 (28%), Positives = 94/178 (52%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+GG+S ET +++LR +F Q+ T+ + +++R + RGFG + + + + A+
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+ H + G+ VE K A+ + E+S+ G + KKIFVGG D
Sbjct: 61 RPHKVDGRVVEPKVAVSR----EDSH-RPG-------AHLTVKKIFVGGSKEDTEEHHLR 108
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G + ++ D +G+ RGF F+TFD +D+ +N++ ++H + EV+++
Sbjct: 109 VYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKA 166
Score = 156 (60.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG +T E LR YF QYG +E I+ +G RGF FV F ++
Sbjct: 88 LTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDN 147
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 148 IVIQKYHTVNGHNCEVRKALLKQEMASASSSQRG 181
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 157 (60.3 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 61 KEHRLDGRLIDPKKAM 76
Score = 149 (57.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV +K+FVGG++ E EE +REYF ++G +E + T RGF F+ F +
Sbjct: 81 DPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPV 138
Query: 62 EDALQHKHHVILGKEVEVKKAIPK 85
+ L+ K H + G + E+K A PK
Sbjct: 139 KKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVGGL D G VTD + D TGR RGFGFI F + VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 171 RFHKLKYKMVEVKRSHP--KDRIDK 193
+ H+L ++++ K++ KD + K
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKK 85
Score = 126 (49.4 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D +T + RGF FITF ED VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 144 KKFHNVSGSKCEIKVAQPKE 163
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 163 (62.4 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + L+H
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 125 KEHRLDGRLIDPKKAM 140
Score = 149 (57.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
M+ ++K+FVGG++ E E+ +REYF +G +E + T RGF F+ F +
Sbjct: 142 MKKDPIKKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDP 201
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ L+ K H + G + E+K A PK ++ G G+ G
Sbjct: 202 VKKILEKKFHNVSGSKCEIKIAQPKEVYQQQYGGRGGSFGG 242
Score = 149 (57.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 36/113 (31%), Positives = 56/113 (49%)
Query: 85 KGHKLEESNGHS-GNCVGDDDTEINTK-KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVI 142
+G ++ S G CV D + + K+FVGGL D G V+D +
Sbjct: 37 EGEQINASKGEEDAGCVADISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIK 96
Query: 143 CDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F ++ + VL+ + H+L ++++ K++ KD I K
Sbjct: 97 MDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKDPIKK 149
Score = 125 (49.1 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D +T + RGF FITF ED +L+
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 208 KKFHNVSGSKCEIKIAQPKE 227
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 228 (85.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 58/168 (34%), Positives = 84/168 (50%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP KLFVG ++ + N + L F Q GTVE +I +R T RGFGFV + + A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 62 EDALQHKHHVIL-GKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
E A++ + L G+ + V KA P+G + E + V + +++VG LP D
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPR-----VYEP-----AFRVYVGNLPWD 254
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
+ G V +A V+ D+ETGR RGFGF+T D N +
Sbjct: 255 VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVG L D+ GTV A VI ++ET + RGFGF+T S D A ++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE- 209
Query: 171 RFHK--LKYKMVEVKRSHPK-DRIDKFMNCYD 199
+F++ L +++ V ++ P+ R ++ Y+
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYE 241
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 57/165 (34%), Positives = 83/165 (50%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP KLFVG + + + + L F Q GTVE + +I +R T RGFGFV + + A
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 62 EDALQHKHHV-ILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
E A++ + + G+ + V +A P+G + E V D +I+VG LP D
Sbjct: 168 EKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPR-----VYDA-----AFRIYVGNLPWD 217
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165
+ G V DA V+ D+ETGR RGFGF+ +E+ N
Sbjct: 218 VDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVG LP D+ GTV + VI +++T + RGFGF+T + + A ++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE- 172
Query: 171 RFHKLKY--KMVEVKRSHPK-DRIDKFMNCYD 199
+F+ + + + V R+ P+ R ++ YD
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYD 204
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 159 (61.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAE 62
P S K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + +
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 63 DALQHKHHVILGKEVEVKKA 82
L+ K H + GK ++ K+A
Sbjct: 107 KVLELKEHKLDGKLIDPKRA 126
Score = 142 (55.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G G G
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG 233
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL D G V D + D TGR RGFGF+ F + + VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 171 RFHKLKYKMVEVKRS 185
+ HKL K+++ KR+
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 123 (48.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKE 215
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 159 (61.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAE 62
P S K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + +
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 63 DALQHKHHVILGKEVEVKKA 82
L+ K H + GK ++ K+A
Sbjct: 107 KVLELKEHKLDGKLIDPKRA 126
Score = 142 (55.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G G G
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG 233
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL D G V D + D TGR RGFGF+ F + + VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 171 RFHKLKYKMVEVKRS 185
+ HKL K+++ KR+
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 123 (48.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKE 215
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 162 (62.1 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YFS++G V + I TG RGFGF++F + + LQ
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 68 KHHVILGKEVEVKKAI 83
K H + G++++ K+A+
Sbjct: 106 KEHRLDGRQIDPKRAM 121
Score = 159 (61.0 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 36/100 (36%), Positives = 54/100 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EPV +K+FVGG++ ET EE +REYF +G +E + T RGF F+ F +
Sbjct: 126 EPV--KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAV 183
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ L+ K+H + G + E+K A PK ++ G G G
Sbjct: 184 KKILEKKYHNVCGSKCEIKIAQPKEIYQQQQFGARGGGFG 223
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 86 GHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDK 145
G E+ G + E + K+FVGGL D G V D + D
Sbjct: 21 GEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDS 80
Query: 146 ETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
TGR RGFGFI F D+ + VLQ + H+L + ++ KR+
Sbjct: 81 NTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRA 120
Score = 117 (46.2 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D +T + RGF FITF E A +L+
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
++H + E+K + PK+
Sbjct: 189 KKYHNVCGSKCEIKIAQPKE 208
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 158 (60.7 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F S E L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 136 KEHRLDGRVIDPKKAM 151
Score = 154 (59.3 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRSRLTGHGRGFGFVIFTKISM 60
+PV +K+FVGG++ E EE +REYF Q+G +E L I +L RGF F+ F +
Sbjct: 156 DPV--KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKR-RGFVFITFKEEDP 212
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 213 VKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 249
Score = 145 (56.1 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPV 141
A P G++ NG G+ + E + K+FVGGL D G V D +
Sbjct: 51 AAPSGNQ----NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 106
Query: 142 ICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 107 KMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 160
Score = 119 (46.9 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF ED VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 158 (60.7 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F S E L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 136 KEHRLDGRVIDPKKAM 151
Score = 154 (59.3 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRSRLTGHGRGFGFVIFTKISM 60
+PV +K+FVGG++ E EE +REYF Q+G +E L I +L RGF F+ F +
Sbjct: 156 DPV--KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKR-RGFVFITFKEEDP 212
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 213 VKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 249
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 33/103 (32%), Positives = 48/103 (46%)
Query: 93 NGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRG 152
NG G+ + E + K+FVGGL D G V D + D TGR RG
Sbjct: 58 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 117
Query: 153 FGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
FGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 118 FGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 160
Score = 119 (46.9 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF ED VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 155 (59.6 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + E L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 68 KHHVILGKEVEVKKA 82
K H + GK ++ K+A
Sbjct: 91 KEHKLDGKLIDPKRA 105
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G N G
Sbjct: 175 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASG 212
Score = 132 (51.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 97 GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
G+ + + + K+F+GGL D G V D + D TGR RGFGF+
Sbjct: 17 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 76
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
F + VL+ + HKL K+++ KR+
Sbjct: 77 LFKDAASVEKVLELKEHKLDGKLIDPKRA 105
Score = 123 (48.4 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 175 SRYHQIGSGKCEIKVAQPKE 194
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 158 (60.7 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F S E L
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 149 KEHRLDGRVIDPKKAM 164
Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRSRLTGHGRGFGFVIFTKISM 60
+PV +K+FVGG++ E EE +REYF Q+G +E L I +L RGF F+ F +
Sbjct: 169 DPV--KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKR-RGFVFITFKEEDP 225
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 226 VKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 262
Score = 137 (53.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 34/116 (29%), Positives = 52/116 (44%)
Query: 80 KKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDA 139
KK +G + + G+ + E + K+FVGGL D G V D
Sbjct: 58 KKNGGRGSRPSGNQNGEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDC 117
Query: 140 PVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
+ D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 118 TIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 173
Score = 119 (46.9 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF ED VL+
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 232 KKFHTVSGSKCEIKVAQPKE 251
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 54/167 (32%), Positives = 89/167 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP RKLF+GG+S ET +++LRE+F ++ T+ + +++R T RGFGFV ++ +
Sbjct: 8 EPEQRRKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSCVEEV 65
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G VE K+AI + E + G + KKIFVGG+ D
Sbjct: 66 DAAMCARPHKVDGHVVEPKRAISR-----EDSVKPG-------AHLMVKKIFVGGIKED- 112
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
G + V+ D+++G+ RGF F+TFD D + ++
Sbjct: 113 TEEYNLRDYFEYGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 156 (60.0 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV +K+FVGG++ E EE +REYF ++G +E + + RGF F+ F +
Sbjct: 151 DPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPV 208
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H I G + E+K A PK ++ G G
Sbjct: 209 KKVLEKKFHTISGSKCEIKVAQPKEVYQQQQYGSGG 244
Score = 140 (54.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 33/103 (32%), Positives = 48/103 (46%)
Query: 93 NGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRG 152
NG G+ + E + K+FVGGL D G V D + D TGR RG
Sbjct: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 153 FGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
FGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 113 FGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 155
Score = 118 (46.6 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D ++ + RGF FITF E+ VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 214 KKFHTISGSKCEIKVAQPKE 233
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 158 (60.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F S E L
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 135 KEHRLDGRVIDPKKAM 150
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRSRLTGHGRGFGFVIFTKISM 60
+PV +K+FVGG++ E EE +REYF Q+G +E L I +L RGF F+ F +
Sbjct: 155 DPV--KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKR-RGFVFITFKEEDP 211
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 212 VKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 248
Score = 145 (56.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPV 141
A P G++ NG G+ + E + K+FVGGL D G V D +
Sbjct: 50 AAPSGNQ----NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 105
Query: 142 ICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 106 KMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 159
Score = 119 (46.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF ED VL+
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 218 KKFHTVSGSKCEIKVAQPKE 237
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 155 (59.6 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + E L+
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 68 KHHVILGKEVEVKKA 82
K H + GK ++ K+A
Sbjct: 127 KEHKLDGKLIDPKRA 141
Score = 143 (55.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G N G
Sbjct: 211 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASG 248
Score = 132 (51.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 97 GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
G+ + + + K+F+GGL D G V D + D TGR RGFGF+
Sbjct: 53 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 112
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
F + VL+ + HKL K+++ KR+
Sbjct: 113 LFKDAASVEKVLELKEHKLDGKLIDPKRA 141
Score = 123 (48.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 211 SRYHQIGSGKCEIKVAQPKE 230
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 158 (60.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F S E L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 136 KEHRLDGRVIDPKKAM 151
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRSRLTGHGRGFGFVIFTKISM 60
+PV +K+FVGG++ E EE +REYF Q+G +E L I +L RGF F+ F +
Sbjct: 156 DPV--KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKR-RGFVFITFKEEDP 212
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 213 VKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 249
Score = 145 (56.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPV 141
A P G++ NG G+ + E + K+FVGGL D G V D +
Sbjct: 51 AAPSGNQ----NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 106
Query: 142 ICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 107 KMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 160
Score = 119 (46.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF ED VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 152 (58.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + + L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 68 KHHVILGKEVEVKKA 82
K H + GK ++ K+A
Sbjct: 90 KEHKLDGKLIDPKRA 104
Score = 142 (55.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G G G
Sbjct: 174 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG 211
Score = 133 (51.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 97 GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
G+ + + + K+F+GGL D G V D + D TGR RGFGF+
Sbjct: 16 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 75
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
F + + VL+ + HKL K+++ KR+
Sbjct: 76 LFKDAASVDKVLELKEHKLDGKLIDPKRA 104
Score = 123 (48.4 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 174 SRYHQIGSGKCEIKVAQPKE 193
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 156 (60.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 150 (57.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV +K+FVGG++ E EE +REYF ++G +E + RGF F+ F +
Sbjct: 151 DPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 209 KKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
Score = 140 (54.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPV 141
A P G++ NG G+ + E + K+FVGGL D G V D +
Sbjct: 46 APPSGNQ----NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 142 ICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 155
Score = 115 (45.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF E+ VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 229 (85.7 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 58/183 (31%), Positives = 95/183 (51%)
Query: 3 PVSLR-KLFVGGVSRETNEETLREYFSQYGTVEETLIIRS-RLTGHGRGFGFVIFTKISM 60
P S+ K+FVGG+ + ++ E L++YFS +G V+E+++I++ RGFGFV F S+
Sbjct: 101 PKSISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSV 160
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
++ + H I GK VE+++AIPK EE +K+FVGGLP
Sbjct: 161 IDEVILINHS-IEGKNVEIRRAIPKEEMTEEPK---------------KQKLFVGGLPKH 204
Query: 121 IXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
I G +++ ++ +K G +GFGFI F E +L + H + K V
Sbjct: 205 ITSDDFNNYFSEFGEISEYNLLTEKN-GTIKGFGFICFKDESVNEIILNEQQHIILGKRV 263
Query: 181 EVK 183
+++
Sbjct: 264 DIR 266
Score = 147 (56.8 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP +KLFVGG+ + + YFS++G + E ++ + G +GFGF+ F S+
Sbjct: 190 EPKK-QKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEK-NGTIKGFGFICFKDESVN 247
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEE 91
E L + H+ILGK V+++ A + +L++
Sbjct: 248 EIILNEQQHIILGKRVDIRIADSQNKRLQQ 277
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 156 (60.0 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 150 (57.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV +K+FVGG++ E EE +REYF ++G +E + RGF F+ F +
Sbjct: 151 DPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 209 KKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
Score = 140 (54.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPV 141
A P G++ NG G+ + E + K+FVGGL D G V D +
Sbjct: 46 APPSGNQ----NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 142 ICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 155
Score = 115 (45.5 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF E+ VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 218 (81.8 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 57/189 (30%), Positives = 95/189 (50%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+P LRKLF+GG+S E E+LR + Q+G + + ++ R T RGFGF+ T ++
Sbjct: 9 DPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVE 68
Query: 62 E-DALQH-KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPL 119
E DA + + H + G+ VE K+A+ + E+S G + KK FVGG+
Sbjct: 69 EVDAAMNARPHKVDGRVVEPKRAVSR----EDSQ-RPG-------AHLTVKKTFVGGIKE 116
Query: 120 DIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKM 179
D G + ++ D +G+ R F F+TFD D+ + ++ ++H +
Sbjct: 117 DTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNGHN 175
Query: 180 VEVKRSHPK 188
EVK++ K
Sbjct: 176 CEVKKALSK 184
Score = 147 (56.8 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K FVGG+ +T E LR+YF QYG +E I+ +G R F FV F +
Sbjct: 104 LTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDK 162
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESN 93
+ K+H + G EVKKA+ K + S+
Sbjct: 163 IVIQKYHTVNGHNCEVKKALSKQEQTSVSS 192
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 156 (60.0 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 150 (57.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV +K+FVGG++ E EE +REYF ++G +E + RGF F+ F +
Sbjct: 151 DPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 209 KKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
Score = 140 (54.3 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPV 141
A P G++ NG G+ + E + K+FVGGL D G V D +
Sbjct: 46 APPSGNQ----NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 142 ICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 155
Score = 115 (45.5 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D + + RGF FITF E+ VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+FH + E+K + PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 152 (58.6 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + + L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 68 KHHVILGKEVEVKKA 82
K H + GK ++ K+A
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 142 (55.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G G G
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG 330
Score = 135 (52.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 80 KKAIPKGHK--LEESNGHS-------GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXX 130
++ +P H +E+ N +S G+ + + + K+F+GGL D
Sbjct: 109 RQHLPADHSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYL 168
Query: 131 XXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G V D + D TGR RGFGF+ F + + VL+ + HKL K+++ KR+
Sbjct: 169 SRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 123 (48.4 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 152 (58.6 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + + L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 68 KHHVILGKEVEVKKA 82
K H + GK ++ K+A
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 142 (55.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G G G
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG 330
Score = 133 (51.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 97 GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
G+ + + + K+F+GGL D G V D + D TGR RGFGF+
Sbjct: 135 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 194
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
F + + VL+ + HKL K+++ KR+
Sbjct: 195 LFKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 123 (48.4 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 152 (58.6 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+++ L EY S++G V + I +TG RGFGFV+F + + L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 68 KHHVILGKEVEVKKA 82
K H + GK ++ K+A
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 142 (55.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T+EE ++EYF +G +E + T RGF F+ +T + L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 67 HKHHVILGKEVEVKKAIPKG---HKLEESNGHSGNCVG 101
++H I + E+K A PK + ++ G G G
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG 330
Score = 133 (51.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 97 GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
G+ + + + K+F+GGL D G V D + D TGR RGFGF+
Sbjct: 135 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 194
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
F + + VL+ + HKL K+++ KR+
Sbjct: 195 LFKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 123 (48.4 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E+ +L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
+R+H++ E+K + PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 223 (83.6 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 64/179 (35%), Positives = 90/179 (50%)
Query: 21 ETLREYFSQYGTVEETLIIRSRLTGHGR--GFGFVIFTKISMAEDALQHKHHVILGKEVE 78
E LREYF Q+G V+E L++R LT R GFGFV F + + L H + K V+
Sbjct: 121 EGLREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQ 180
Query: 79 V--KKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD--IXXXXXXXXXXXXG 134
+ K A P+ + + TKKIFVGGL ++ +
Sbjct: 181 IDPKVAFPRRAQPKVQ------------MVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKV 228
Query: 135 TVTDAPVICDKETGRPRG--FGFITFDSEDAANNVLQTRFHKLKYKMVEV--KRSHPKD 189
V DA ++ DK T R RG FGF+TF+SED V + FH++ KMV+V K++ PK+
Sbjct: 229 QVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEKVCEIHFHEINNKMVQVECKKAQPKE 287
Score = 125 (49.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVE--ETLIIRSRLTG-H-GRGFGFVIFTKISMAE 62
+K+FVGG+S T E +++YF Q+ V+ + +++ + T H G GFGFV F + E
Sbjct: 202 KKIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVE 261
Query: 63 DALQHKHHVILGK--EVEVKKAIPK 85
+ H I K +VE KKA PK
Sbjct: 262 KVCEIHFHEINNKMVQVECKKAQPK 286
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 50/167 (29%), Positives = 86/167 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S E +++LRE+F ++GT+ + +++R T R F FV ++ +
Sbjct: 8 EPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEV 67
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 68 DAAMCAQPHNVDGRVVEPKRAVSR-----EDSVKPG-------AHLTVKKIFVGGIKEDT 115
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
G + V+ D+ +G+ R F+TFD D + ++
Sbjct: 116 EEYNLRDYFEKYGKIKTMEVMEDRLSGKERLL-FVTFDDHDTVDKIV 161
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 204 (76.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 43/125 (34%), Positives = 63/125 (50%)
Query: 65 LQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXX 124
L + H + G+ ++ K P+G + E + G G + KIFVGG+P +
Sbjct: 11 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 70
Query: 125 XXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR
Sbjct: 71 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 130
Query: 185 SHPKD 189
+ P+D
Sbjct: 131 AEPRD 135
Score = 166 (63.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 57 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 116
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 117 HFHDIMGKKVEVKRAEPRDSK-SQAPGQPG 145
Score = 47 (21.6 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 225 PAFQIHQCYGSPSAGRGGLLVPANPVCPSY 254
PA Q YG P AGRG P P SY
Sbjct: 181 PAGQAIGGYGPPPAGRGA--PPPPPPFTSY 208
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 146 (56.5 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S + EE LREYF YG +E + T RGF FV F + L+
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+++H I + E+K A PK ++ N G
Sbjct: 175 NRYHQIGSGKCEIKVAQPKEVYRQQQNRDRG 205
Score = 143 (55.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+++ L +Y S++G V + I LTG RGFGFV+F + L+
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 68 KHHVILGKEVEVKKA 82
H + GK ++ K+A
Sbjct: 91 TEHKLDGKLIDPKRA 105
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 97 GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
G+ + + + K+F+GGL D G V D + D TGR RGFGF+
Sbjct: 17 GSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFV 76
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
F ++ + VL+ HKL K+++ KR+
Sbjct: 77 LFKDAESVDRVLELTEHKLDGKLIDPKRA 105
Score = 124 (48.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL DI G + + D +T RGF F+TF E+ +L+
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
R+H++ E+K + PK+
Sbjct: 175 NRYHQIGSGKCEIKVAQPKE 194
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 156 (60.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 130 KEHRLDGRVIDPKKAM 145
Score = 142 (55.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 2 EPVSLRKLFVGGVSRET-NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
+PV +K+FVGG++ E+ EE +REYF ++G +E + RGF F+ F +
Sbjct: 150 DPV--KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP 207
Query: 61 AEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ L+ K H + G + E+K A PK ++ G G
Sbjct: 208 VKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
Score = 140 (54.3 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPV 141
A P G++ NG G+ + E + K+FVGGL D G V D +
Sbjct: 45 APPSGNQ----NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 100
Query: 142 ICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP--KDRIDK 193
D TGR RGFGFI F + VL + H+L ++++ K++ KD + K
Sbjct: 101 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 154
Score = 111 (44.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 110 KKIFVGGL-PLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
KKIFVGGL P G + + D + + RGF FITF E+ VL
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 169 QTRFHKLKYKMVEVKRSHPKD 189
+ +FH + E+K + PK+
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKE 233
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 158 (60.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 35/82 (42%), Positives = 46/82 (56%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S E N E L +F+QYG V + + R G RGF FV FT + AL
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 67 HKHHVILGKEVEVKKAIPKGHK 88
+ I GK VEVK A + +K
Sbjct: 89 AREQTIKGKSVEVKPAKSRENK 110
Score = 132 (51.5 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+ + +E+ LR +F Q+G V++ + T R F F++F + A+ A
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASS 169
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNG 94
+E +VKKA+P+G + + G
Sbjct: 170 QTKQTFGTRECDVKKAVPQGKRFPGAQG 197
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 34/105 (32%), Positives = 49/105 (46%)
Query: 91 ESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRP 150
+ NGHS G++D KKIFVGG+ ++ G V A V D+ GR
Sbjct: 17 KENGHSTK--GNED-----KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRS 69
Query: 151 RGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDRIDKFM 195
RGF F+ F + + L R +K K VEVK + ++ F+
Sbjct: 70 RGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKKVFV 114
Score = 105 (42.0 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGLP D G V D DK+T R F FI F+ E++A+
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASS 169
Query: 170 TRFHKLKYKMVEVKRSHPKDR 190
+ +VK++ P+ +
Sbjct: 170 QTKQTFGTRECDVKKAVPQGK 190
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 168 (64.2 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 53 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 112
Query: 64 ALQHKHHVILGKEVEVKKAIPK 85
+ K+H + G EV+KA+ K
Sbjct: 113 IVIQKYHTVNGHNCEVRKALSK 134
Score = 123 (48.4 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 27/103 (26%), Positives = 48/103 (46%)
Query: 91 ESNGHSGNCVGDD--DTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETG 148
E G +CV + KKIFVGG+ D G + ++ D+ +G
Sbjct: 35 EQWGTLTDCVDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 94
Query: 149 RPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDRI 191
+ RGF F+TFD D+ + ++ ++H + EV+++ K +
Sbjct: 95 KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 137
Score = 106 (42.4 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEE 35
EP LRKLF+GG+S ET +E+LR +F Q+GT+ +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTD 42
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 161 (61.7 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YFS++G V + I TG RGFGF++F + S + L
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 68 KHHVILGKEVEVKKAI 83
K H + G++++ KKA+
Sbjct: 156 KEHRLDGRQIDPKKAM 171
Score = 133 (51.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 30/93 (32%), Positives = 43/93 (46%)
Query: 93 NGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRG 152
+G G + E + K+FVGGL D G VTD + D TGR RG
Sbjct: 78 DGADGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRG 137
Query: 153 FGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
FGFI F + VL + H+L + ++ K++
Sbjct: 138 FGFILFKEPSGVDKVLAQKEHRLDGRQIDPKKA 170
Score = 133 (51.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EPV +K+FVGG++ ET EE +REYF +G +E + + RGF F+ F +
Sbjct: 176 EPV--KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAV 233
Query: 62 EDALQHKHHVILG------KE--VEVKKAIPKG-HKLEESNGHSG 97
+ L+ K+H + G KE E+K A PK ++ ++ G G
Sbjct: 234 KKILEKKYHNVSGTKDTSGKEGLCEIKIAQPKEVYQQQQYGGRFG 278
Score = 105 (42.0 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D ++ + RGF FITF E+A +L+
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 170 TRFHKL--------KYKMVEVKRSHPKD 189
++H + K + E+K + PK+
Sbjct: 239 KKYHNVSGTKDTSGKEGLCEIKIAQPKE 266
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 211 (79.3 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
+S RKLF+ G++ +T E LR FS YG +EE ++I ++TG +G+GFV F + A
Sbjct: 72 ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL 131
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXX 123
AL+ I G+ + A ++G+ G G +I+ +KI+V +P D+
Sbjct: 132 ALKEPSKKIDGRVTVTQLA---------ASGNQGT--GSQIADISMRKIYVANVPFDMPA 180
Query: 124 XXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
G V + P+ DK TG+ RGF + + + A L
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225
Score = 113 (44.8 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 32/100 (32%), Positives = 50/100 (50%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
+S+RK++V V + + L +F YG VEE + ++TG RGF ++ A+
Sbjct: 164 ISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQA 223
Query: 64 ALQHKHHVILGKEVEVKKAIP--KGHKL---EESNGHSGN 98
AL VI GK + K A+ KG K + +G SG+
Sbjct: 224 ALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGH 263
Score = 39 (18.8 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 233 YGSPSAGRGGLLVPAN--------PVCPSYGLCMNGYCNGSFHQ 268
YG P G G +P + P YGL + G HQ
Sbjct: 338 YGGPGTGSGQYRMPPSSMPGGGGYPESGHYGLSSSAGYPGQHHQ 381
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 156 (60.0 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+S +T+++ L++YF+++G V + I TG RGFGF++F + E L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 68 KHHVILGKEVEVKKAI 83
K H + G+ ++ KKA+
Sbjct: 61 KEHRLDGRVIDPKKAM 76
Score = 126 (49.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV +K+FVGG++ E EE +REYF ++G +E + + RGF F+ F +
Sbjct: 81 DPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPV 138
Query: 62 EDALQHKHHVILGKE 76
+ L+ K H I G +
Sbjct: 139 KKVLEKKFHTISGSK 153
Score = 124 (48.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 29/85 (34%), Positives = 41/85 (48%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVGGL D G V D + D TGR RGFGFI F + VL
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 171 RFHKLKYKMVEVKRSHP--KDRIDK 193
+ H+L ++++ K++ KD + K
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDPVKK 85
Score = 98 (39.6 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KKIFVGGL + G + + D ++ + RGF FITF E+ VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 170 TRFHKL 175
+FH +
Sbjct: 144 KKFHTI 149
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 158 (60.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 40/114 (35%), Positives = 62/114 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L KLF+GG+S +T +E+LR +F Q+GT+ + ++R RGFGFV +T +
Sbjct: 9 EPEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDC-VMRDPNNKISRGFGFVTYTTVEEL 67
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVG 115
+ A+ + H + G VE K+A+ + E + G + KKIFVG
Sbjct: 68 DAAMNARPHKVDGGVVEPKRAVSR-----EDSPRPG-------AHLTVKKIFVG 109
Score = 122 (48.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVG E+T +F QYG +E I+ R +G RGF FV F +
Sbjct: 101 LTVKKIFVG-----VKEDTEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDT 155
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ S+ G
Sbjct: 156 IVIQKYHTVNGHNCEVRKALSNQELASASSSQRG 189
Score = 96 (38.9 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 107 INTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANN 166
+ KKIFVG + G + ++ D+ +G+ RGF F+TFD D+ +
Sbjct: 101 LTVKKIFVG-----VKEDTEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDT 155
Query: 167 VLQTRFHKLKYKMVEVKRS 185
++ ++H + EV+++
Sbjct: 156 IVIQKYHTVNGHNCEVRKA 174
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 194 (73.4 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 52/183 (28%), Positives = 90/183 (49%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E L KLF+G +S ET +++LRE+ S+ T+ + +++R L GFGFV ++ +
Sbjct: 19 ESEHLTKLFIGYLSFETTDDSLREH-SEKWTLTDCVVMRDPLFERSSGFGFVTYSCVEEV 77
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G+ V P+ E+S T + KKIFVGG+ D
Sbjct: 78 DAAMCARPHKVDGRVVG-----PRAVSREDSV--------KPGTHLTVKKIFVGGVREDR 124
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + V+ D+++G+ RGF F+TFD D + + ++H + E
Sbjct: 125 EEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCE 184
Query: 182 VKR 184
+K+
Sbjct: 185 MKK 187
Score = 157 (60.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 35/103 (33%), Positives = 55/103 (53%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGGV + E L++YF +YG + ++ R +G RGF FV F + +
Sbjct: 110 LTVKKIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDK 169
Query: 64 ALQHKHHVILGKEVEVKKAIPK-GHKLEESN----GHSGNCVG 101
K+H I G E+KK + K G + S G SGN +G
Sbjct: 170 IAVQKYHTINGHNCEMKKVLSKQGMQSAGSQRGRGGGSGNLMG 212
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 194 (73.4 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 43/115 (37%), Positives = 66/115 (57%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGG 116
+ A+ + H + G+ VE K+A+ + E + G + KKIFVGG
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGG 111
Score = 130 (50.8 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + GT+TD V+ D T R RGFGF+T+ + + + +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 TRFHKLKYKMVEVKRS 185
R HK+ ++VE KR+
Sbjct: 74 ARPHKVDGRVVEPKRA 89
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 209 (78.6 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 58/187 (31%), Positives = 96/187 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +++LRE+F + GT+ + +++R T RGFGFV ++ +
Sbjct: 27 EPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEV 86
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ H + G+ VE KKA+ + ++ +G + KK FVGG+ D
Sbjct: 87 DAAMCAWLHKVDGRVVEPKKAVSREDSVK---------LG---AHLMVKKTFVGGIKEDT 134
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + + + ++++GR RGF F F D V+Q + H + E
Sbjct: 135 EEYNLKDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHDVDKIVVQ-KHHTINGHNCE 191
Query: 182 VKRSHPK 188
VK++ K
Sbjct: 192 VKKALSK 198
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 209 (78.6 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
RKL V G+ + + + L++Y S++G +E+ ++++ R TG RGFG+V F A++AL+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 67 HKHHVILGKEV-EVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXX 125
+H LG + EVK A PK + + +IFV +P +
Sbjct: 63 GEH--FLGNRILEVKVATPKEEMRQPAK--------------KVTRIFVARIPSSVSESD 106
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G +TD + D + + RG GFITF S D+ ++++ H L V V R+
Sbjct: 107 FRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRA 165
Query: 186 HPKD 189
PK+
Sbjct: 166 TPKE 169
Score = 140 (54.3 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 32/91 (35%), Positives = 55/91 (60%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRS-RLTGHGRGFGFVIFTKISMAEDALQ 66
K+FVG + +E + + LR+YF ++G +++ I + + +GH RGFGFV F + +A D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGH-RGFGFVTFAENGVA-DRVA 298
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ H I G+EV + A P L+E+ +G
Sbjct: 299 RRSHEICGQEVAIDSATP----LDEAGPSAG 325
Score = 133 (51.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+ V G+P DI G + D V+ D+ TGR RGFG++TF S + A N L+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 170 TRFHKLKYKMVEVKRSHPKDRI 191
H L +++EVK + PK+ +
Sbjct: 63 GE-HFLGNRILEVKVATPKEEM 83
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 205 (77.2 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L KLF+ G+S +T +E+LR + Q G + + +++R T H RGFGF +
Sbjct: 9 EPEQLWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ + + H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 69 DAVMNARPHKMDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDT 116
Query: 122 XXXXXXXXXXXXGTVTDA-PVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
+ ++ D+ +G+ RGF F+TFD D + ++ + H +
Sbjct: 117 EEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDH 176
Query: 181 EVKRSHPKDRI 191
EV+++ K +
Sbjct: 177 EVRKALSKQEM 187
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 190 (71.9 bits), Expect = 9.3e-15, P = 9.3e-15
Identities = 51/192 (26%), Positives = 92/192 (47%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L +LF+ G++ ET E+LR +F Q+G + + +++ T H R FGFV++ +
Sbjct: 9 EPKQLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKV 68
Query: 62 EDALQHKHHVI--LGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPL 119
+ A+ + H + +GK K A+ + E+S + G KK FVGG+
Sbjct: 69 DAAVNVRPHKVNRIGKP---KMAVSR----EDSQRPGAHLTG--------KKTFVGGIKE 113
Query: 120 DIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKM 179
D G + ++ D+ + + RGF F+T D D+ + ++ + H +
Sbjct: 114 DTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHN 173
Query: 180 VEVKRSHPKDRI 191
EV+R+ K +
Sbjct: 174 YEVRRALSKQEM 185
Score = 133 (51.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/98 (30%), Positives = 44/98 (44%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K FVGG+ +T E LR YF QYG + I+ + + RGF FV + +
Sbjct: 104 KKTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVI 163
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDD 104
K H + G EV++A+ K S G+ D
Sbjct: 164 QKQHTVNGHNYEVRRALSKQEMASASTSRRSKGSGNFD 201
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 189 (71.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 48/172 (27%), Positives = 80/172 (46%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR + S + ++ T RGF FV + +
Sbjct: 8 EPGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEV 63
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + + VE K+ + + E + G + KKIF GG+ D
Sbjct: 64 DAAMNARPHKVDRRVVEPKRGVSR-----EGSQRPG-------AHLTVKKIFAGGIKEDT 111
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFH 173
G + ++ D +G+ RGF F+TFD D+ + + ++H
Sbjct: 112 EERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYH 163
Score = 123 (48.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+F GG+ +T E LR+YF + G +E I+ +G RGF FV F +
Sbjct: 97 LTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDK 156
Query: 64 ALQHKHHVILGKEVE 78
+ K+H + G E
Sbjct: 157 TVIQKYHTVNGHNRE 171
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 189 (71.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 56/192 (29%), Positives = 93/192 (48%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKI---S 59
P LRKLF+ G+S ET +E+L +F + G +++R T H RGFGFV TK S
Sbjct: 22 PEELRKLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFV--TKPWWRS 78
Query: 60 MAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPL 119
+A A+ + H + + VE K+ + +G + + H + KKIFVGG+
Sbjct: 79 LA--AMNARPHKVDERVVEPKRDVSRGDS-QRPHAH-----------LTVKKIFVGGIQE 124
Query: 120 DIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKM 179
G + D ++ D+ + + RGF F TFD D+ + ++ ++H +
Sbjct: 125 GTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHN 183
Query: 180 VEVKRSHPKDRI 191
EV+ + K +
Sbjct: 184 CEVREALSKQEM 195
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 197 (74.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 55/192 (28%), Positives = 93/192 (48%)
Query: 2 EPVSLRKLFVGGVSRETNEETLR--EYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKIS 59
EP L+KLFVGG+S E E+L +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVE 68
Query: 60 MAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPL 119
+ A+ + H + G+ VE K+A G K + G + KKIFVGG+
Sbjct: 69 EVDAAMNARPHKVGGRAVEPKRA---GSKDSQRPG----------AHLTMKKIFVGGVKE 115
Query: 120 DIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKM 179
D G + D+ +G+ R F F+TFD+ + + ++ ++ +
Sbjct: 116 DTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFDN--SVDKIVIQKYSTVNGHN 172
Query: 180 VEVKRSHPKDRI 191
EV+++ K +
Sbjct: 173 CEVRKALSKQEM 184
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGGV +T E LR+Y Q G E T I R +G R F FV F S+ +
Sbjct: 103 LTMKKIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFDN-SVDKI 160
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+Q K+ + G EV+KA+ K S+ G
Sbjct: 161 VIQ-KYSTVNGHNCEVRKALSKQEMASASSSQRG 193
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 186 (70.5 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 109 TKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
TKKIFVGGL ++ G V DA ++ DK T R RGFGF+TF+SED V
Sbjct: 40 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 99
Query: 169 QTRFHKLKYKMVEVKRSHPKD 189
+ FH++ KMVE K++ PK+
Sbjct: 100 EIHFHEINNKMVECKKAQPKE 120
Score = 161 (61.7 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G V++ +++ + T RGFGFV F + E +
Sbjct: 41 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 100
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 101 IHFHEINNKMVECKKAQPK 119
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 186 (70.5 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 54/206 (26%), Positives = 97/206 (47%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
E L KLF+GG+S ET++++LRE+F Q+ + +++ + T R FGFV ++ +
Sbjct: 8 EQEQLSKLFIGGLSFETSDDSLREHFEQWDMLTHCVVMDPQ-TKRSRVFGFVTYSCVKEV 66
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + G VE K+ P E + C + KKIF+GG+ D
Sbjct: 67 DAAMCARPHKVDGCVVEPKR--P----FREDSVKPVVC-------LLAKKIFIGGIKEDT 113
Query: 122 XXXXXXXXXXXXGTVTDAPVIC-DKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180
G + ++ D+++G RGF F+TFD + ++ + H +
Sbjct: 114 EEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQKCHTINRHNC 173
Query: 181 EVKRSHPKDRID--KFMNCYDCNNSN 204
+VK++ K + + C +SN
Sbjct: 174 DVKKAPSKQEMPSVRSQRCRGGRSSN 199
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 167 (63.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KL VGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEE-SNGHSGNCVG 101
+ + G+++ V +A G E S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSENRSRGYRGGSTG 99
Score = 108 (43.1 bits), Expect = 0.00057, P = 0.00057
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+ VGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Score = 37 (18.1 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 148 GRPRGFGFITFDSEDAANN 166
G RG+G FDS N
Sbjct: 118 GGDRGYGGSRFDSRSGGYN 136
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 167 (63.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KL VGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEE-SNGHSGNCVG 101
+ + G+++ V +A G E S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSENRSRGYRGGSTG 99
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+ VGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Score = 37 (18.1 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 148 GRPRGFGFITFDSEDAANN 166
G RG+G FDS N
Sbjct: 118 GGDRGYGGSRFDSRSGGYN 136
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 167 (63.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KL VGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEE-SNGHSGNCVG 101
+ + G+++ V +A G E S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSENRSRGYRGGSTG 99
Score = 108 (43.1 bits), Expect = 0.00033, P = 0.00033
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+ VGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Score = 37 (18.1 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 148 GRPRGFGFITFDSEDAANN 166
G RG+G FDS N
Sbjct: 118 GGDRGYGGSRFDSRSGGYN 136
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 197 (74.4 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 51/190 (26%), Positives = 88/190 (46%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR + S + ++ T RGF FV + +
Sbjct: 9 EPGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEV 64
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + H + + VE K+ + + E + G + KKIF GG+ D
Sbjct: 65 DAAMNARPHKVDRRVVEPKRGVSR-----EGSQRPG-------AHLTVKKIFAGGIKEDT 112
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D +G+ RGF F+TFD D+ + + ++H + E
Sbjct: 113 EERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNRE 172
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 173 VRKALSKQEM 182
Score = 149 (57.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+F GG+ +T E LR+YF G +E I+ +G RGF FV F +
Sbjct: 98 LTVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDK 157
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 158 TVIQKYHTVNGHNREVRKALSKQEMASASSSQRG 191
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 198 (74.8 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 48/190 (25%), Positives = 90/190 (47%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+P L+KLF+GG+S ET E+LR +F Q G + + + +R T H RGFGFV + +
Sbjct: 23 DPEQLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEV 82
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A + H + + VE K+A+ + + H +++ E +
Sbjct: 83 DAATNARPHKV-DRVVEPKRAVSREDS-QRPGAHLTMKKKEEEEEEEDDN--------NT 132
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G + ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 133 EEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 192
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 193 VRKALSKQEM 202
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 193 (73.0 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 50/173 (28%), Positives = 79/173 (45%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVG + + L + F G VE +I ++TG RGFGFV + +S E A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 68 KHHVIL-GKEVEVKKAIP---------KGHKLEESNGHSGNCVGDDDTEINTKKIFVGGL 117
+ L G+ + V P +G + + SG G + +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 118 PLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
+ G V +A VI D+++GR +GFGF+T+DS N +++
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 180 (68.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KLFVGG+ + E L E+FSQ+G VE+ II + +G RGFGFV F A+ A
Sbjct: 16 VKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAA 75
Query: 66 QHKHHVILGKEVEVKKAIPK 85
K H I G VEVKKA+PK
Sbjct: 76 VVKFHPIQGHRVEVKKAVPK 95
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D+ G V A +I DK++G+ RGFGF+ F S DAA+
Sbjct: 17 KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAV 76
Query: 170 TRFHKLKYKMVEVKRSHPKDRI 191
+FH ++ VEVK++ PK+ I
Sbjct: 77 VKFHPIQGHRVEVKKAVPKEDI 98
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 189 (71.6 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 56/192 (29%), Positives = 93/192 (48%)
Query: 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKI---S 59
P LRKLF+ G+S ET +E+L +F + G +++R T H RGFGFV TK S
Sbjct: 6 PEELRKLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFV--TKPWWRS 62
Query: 60 MAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPL 119
+A A+ + H + + VE K+ + +G + + H + KKIFVGG+
Sbjct: 63 LA--AMNARPHKVDERVVEPKRDVSRGDS-QRPHAH-----------LTVKKIFVGGIQE 108
Query: 120 DIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKM 179
G + D ++ D+ + + RGF F TFD D+ + ++ ++H +
Sbjct: 109 GTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHN 167
Query: 180 VEVKRSHPKDRI 191
EV+ + K +
Sbjct: 168 CEVREALSKQEM 179
Score = 132 (51.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ T E LR F QYG ++ I+ R + RGF F F +
Sbjct: 96 LTVKKIFVGGIQEGTEEHHLRNNFEQYGKIDIE-IMTDRGSDKKRGFAFETFDDHDSVDK 154
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDD 104
+ K+H + G EV++A+ K ++ ++ G G D
Sbjct: 155 IVIQKYHTVNGHNCEVREALSK-QEMASASSSGGGYGGSGD 194
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 191 (72.3 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 43/147 (29%), Positives = 74/147 (50%)
Query: 39 IRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
+R + RGFGFV F+ ++ + A+ + H I G+ VE K+A+ + EES
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR----EES------ 50
Query: 99 CVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITF 158
G + KK+FVGG+ D G + +I D+++G+ RGFGF+TF
Sbjct: 51 --GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 108
Query: 159 DSEDAANNVLQTRFHKLKYKMVEVKRS 185
D D + ++ ++H + EV+++
Sbjct: 109 DDHDPVDKIVLQKYHTINGHNAEVRKA 135
Score = 187 (70.9 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
V+++KLFVGG+ +T E LR+YF +YG ++ II R +G RGFGFV F +
Sbjct: 57 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 116
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H I G EV+KA+ + E + SG
Sbjct: 117 IVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 150
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 147 (56.8 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++K+FVGG+ +T E LR+YF QYG +E I+ + +G RGF F++F + +
Sbjct: 99 VKKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIV 157
Query: 66 QHKHHVILGKEVEVKKAIPK 85
K+H G EV+KA+ K
Sbjct: 158 IQKYHTGNGLNCEVRKALSK 177
Score = 134 (52.2 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR F Q GT+ + ++ R RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATV--- 65
Query: 62 EDALQHKHHVILGKEVEVKKAIPK 85
+ ++ + HV + VE K AI +
Sbjct: 66 -EEVKGRPHVD-ERVVEPKWAISR 87
Score = 97 (39.2 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGG+ D G + ++ D+ +G+ RGF FI FD D+ + ++
Sbjct: 100 KKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVI 158
Query: 170 TRFHKLKYKMVEVKRSHPKDRI 191
++H EV+++ K +
Sbjct: 159 QKYHTGNGLNCEVRKALSKQEM 180
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 103 DDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSED 162
D+++ N KIFVGG+P + G VT+ +I D E RPRGFGFITF+ E
Sbjct: 86 DNSKSN--KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 143
Query: 163 AANNVLQTRFHKLKYKMVEVKRSHPKD 189
+ + + FH + K VEVKR+ P+D
Sbjct: 144 SVDQAVNMHFHDIMGKKVEVKRAEPRD 170
Score = 166 (63.5 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 151
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 152 HFHDIMGKKVEVKRAEPRDSK-SQAPGQPG 180
Score = 152 (58.6 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 68 KHHVILGKEVEVKKAI-PKGHKLEESNGHSGNCVGDDDTEINTKKIFV 114
+ H + G+ + ++ K +K+ G NC G+ + KK V
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSNKIFVG-GIPHNC-GETELREYFKKFGV 116
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F Q+GT+ + +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVE 78
+ A+ + H + G+ VE
Sbjct: 69 DAAMNARPHKVDGRVVE 85
Score = 121 (47.7 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + GT+TD V+ D T R RGFGF+T+ + + + +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 TRFHKLKYKMVE 181
R HK+ ++VE
Sbjct: 74 ARPHKVDGRVVE 85
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 42/172 (24%), Positives = 81/172 (47%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L KL +GG+ +T E+LR +F ++GT + +++R T R GFV + +
Sbjct: 18 EPEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEV 77
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+ A+ + + G+ V+ K+A+ + E + G T++ KKIF GG+ D
Sbjct: 78 DAAMNARPQKMDGRLVKPKRAVSR-----EDSQRPG-------TQLTVKKIFEGGIKEDT 125
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFH 173
G + ++ D+ +G+ + F + D D+ + + ++H
Sbjct: 126 EEHNVRDYFEHYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVDKIAIQKYH 176
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 182 (69.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 35/90 (38%), Positives = 57/90 (63%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG++ ET +E+LR +F Q+GT+ E +++R T RGFGFV + +
Sbjct: 9 EPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPK--GHKL 89
+ A+ + H + G+ VE ++A+ + H L
Sbjct: 69 DAAMNARPHKVDGRVVEPERAVSREDSHSL 98
Score = 141 (54.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 31/90 (34%), Positives = 45/90 (50%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ +T E LR+Y QYG +E I+ R +G RGF FV F + +
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
K+H + V+KA+ K S+ G
Sbjct: 161 KYHTVNDHNC-VRKALSKQEMASASSSQRG 189
Score = 122 (48.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + GT+T+ V+ D T R RGFGF+T+ + + + +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 TRFHKLKYKMVEVKRS 185
R HK+ ++VE +R+
Sbjct: 74 ARPHKVDGRVVEPERA 89
Score = 119 (46.9 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 78 EVKKAI-PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTV 136
EV A+ + HK++ V +D+ T KIFVGG+ D G +
Sbjct: 67 EVDAAMNARPHKVDGRVVEPERAVSREDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKI 126
Query: 137 TDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFH 173
++ D+ +G+ RGF F+TFD D+ + ++ ++H
Sbjct: 127 EVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYH 163
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 187 (70.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 50/190 (26%), Positives = 86/190 (45%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S ET +E+LR +F ++G + + ++ R RGFG V
Sbjct: 9 EP-QLRKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVVP------- 60
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121
+H V + + + K ++ G + KKIFVGG+ D
Sbjct: 61 ----RHLEEVAAARNPGPTRWTEESWKQRAASREDSQRPG---AHLTVKKIFVGGIKGDA 113
Query: 122 XXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181
G ++ D+ +G+ RGF F+TFD D+ + ++ ++H + E
Sbjct: 114 EEHHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHGCE 173
Query: 182 VKRSHPKDRI 191
V+++ K +
Sbjct: 174 VRKALSKQEM 183
Score = 139 (54.0 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ + E LR+ F Q G E I+ R +G RGF FV F +
Sbjct: 99 LTVKKIFVGGIKGDAEEHHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 158
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEES---NGHSGN 98
+ K+H + G EV+KA+ K S G SG+
Sbjct: 159 IVIQKYHTVNGHGCEVRKALSKQEMARASPSQRGRSGS 196
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 192 (72.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 40/107 (37%), Positives = 66/107 (61%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG++ ET +++L+EYFSQ+G V+E ++R TG RGFGF+ F K + +
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTF-KDPKTVNTVMV 169
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFV 114
K H + GK ++ K+AIP+ + + S G V + TE + K+ F+
Sbjct: 170 KEHYLDGKIIDPKRAIPRDEQEKTSKIFVGG-VSQEATEQDFKQFFM 215
Score = 175 (66.7 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGGVS+E E+ +++F Q+G V + ++ + TG RGFGFV F + E AL
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESN-GHSG 97
ILGK +EVKKA P+G+ ++ + G G
Sbjct: 255 PLE-ILGKTIEVKKAQPRGNLRDDGDRGRRG 284
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 41/113 (36%), Positives = 59/113 (52%)
Query: 79 VKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTD 138
V + K H L+ + D+ E T KIFVGG+ + G V D
Sbjct: 164 VNTVMVKEHYLDGKIIDPKRAIPRDEQE-KTSKIFVGGVSQEATEQDFKQFFMQFGRVID 222
Query: 139 APVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDRI 191
A ++ DK+TGRPRGFGF+TFDSE A L +R ++ K +EVK++ P+ +
Sbjct: 223 ATLMIDKDTGRPRGFGFVTFDSEAAVEAAL-SRPLEILGKTIEVKKAQPRGNL 274
Score = 133 (51.9 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL + G V + V+ D TGR RGFGF+TF N V+
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVM-V 169
Query: 171 RFHKLKYKMVEVKRSHPKDRIDK 193
+ H L K+++ KR+ P+D +K
Sbjct: 170 KEHYLDGKIIDPKRAIPRDEQEK 192
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 41/115 (35%), Positives = 65/115 (56%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L+KLF+GG+S ET +E+LR +F ++GT+ +++R T RGFGFV + +
Sbjct: 9 EPEQLQKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEV 67
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGG 116
+ A+ + H + G+ VE K+A+ + E+S D + KKIF GG
Sbjct: 68 DAAMNARPHKVDGRVVEPKRAVSR----EDSQTL--------DAHLTVKKIFGGG 110
Score = 116 (45.9 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 98 NCVGDDDTEINT-KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
+C+ E +K+F+GGL + GT+T V+ D T R RGFGF+
Sbjct: 1 SCLSQSPKEPEQLQKLFIGGLSFE-TTDESLRSHFEWGTLTGCVVMRDPNTKRSRGFGFV 59
Query: 157 TFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
T+ + + + + R HK+ ++VE KR+
Sbjct: 60 TYATVEEVDAAMNARPHKVDGRVVEPKRA 88
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 0.00017, P = 0.00017
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 170 (64.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 181 (68.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 109 TKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
TKKIFVGGL + G V DA ++ DK T R RGFGF+TF++ED V
Sbjct: 48 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 107
Query: 169 QTRFHKLKYKMVEVKRSHPKD 189
+ FH++ KMVE K++ PK+
Sbjct: 108 EIHFHEINNKMVECKKAQPKE 128
Score = 163 (62.4 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S T E +++YF Q+G VE+ +++ + T RGFGFV F + E +
Sbjct: 49 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 108
Query: 67 HKHHVILGKEVEVKKAIPK 85
H I K VE KKA PK
Sbjct: 109 IHFHEINNKMVECKKAQPK 127
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 169 (64.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE+ L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 169 (64.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE+ L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 169 (64.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE+ L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 168 (64.2 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSSG 99
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 168 (64.2 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 38/110 (34%), Positives = 58/110 (52%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+ ++LR+YFS++G + E +++R T RGFGFV F + + L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGL 117
HH + K ++ K A P+ TKKIFVGGL
Sbjct: 78 PHHELDSKTIDPKVAFPRR--------------AQPKMVTRTKKIFVGGL 113
Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 109 TKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
+ K+F+GGL G + + V+ D T R RGFGF+TF + + VL
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 169 QTRFHKLKYKMVEVKRSHPK 188
H+L K ++ K + P+
Sbjct: 76 GQPHHELDSKTIDPKVAFPR 95
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 188 (71.2 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 54/183 (29%), Positives = 83/183 (45%)
Query: 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68
LFVG +S ++ L E F GTV +I R +G +GFG+V F AE A K
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 69 HHVIL-GKEVEVKKAIPKGHKLEESNGHSGNCVGDD-DTEINTKKIFVGGLPLDIXXXXX 126
+ G+E++V + K ++ G GD E +T +FVG LP D
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDT--LFVGNLPFDADEDSV 358
Query: 127 XXXXXXXGTVTDAPVICDKETGRPRGFGFITFDS-EDAANNVLQTRFHKLKYKMVEVKRS 185
V + ++E+GR +GFG++TF+S EDA + Q + + + S
Sbjct: 359 GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYS 418
Query: 186 HPK 188
P+
Sbjct: 419 TPR 421
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 134 (52.2 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
+K+FVGG+S +T EE ++EY +G +E + T RGF F+ +T + L+
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLE 153
Query: 67 HKHHVILGKEVEVKKAIPK 85
+++H I + E+K A PK
Sbjct: 154 NRYHQIGSGKCEIKVAEPK 172
Score = 118 (46.6 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
KK+FVGGL D G + + + D +T RGF FIT+ E +L+
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLE 153
Query: 170 TRFHKLKYKMVEVKRSHPKD 189
R+H++ E+K + PK+
Sbjct: 154 NRYHQIGSGKCEIKVAEPKE 173
Score = 103 (41.3 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+ G+S +T+++ L +G V + +I +TG RGFGFV+F + + + L+
Sbjct: 17 KMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLEL 71
Query: 68 KHHVILGKEVEVKKA 82
K H + ++ K+A
Sbjct: 72 KEHKLDSMLIDPKRA 86
Score = 38 (18.4 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 193 KFMNCYDCNNSN 204
+F +CYD N N
Sbjct: 210 RFNHCYDQGNGN 221
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 187 (70.9 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 49/176 (27%), Positives = 84/176 (47%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+PV RK+FV G+ +T ETL E F QYG +E+ + +++G +G+GF+++ S A
Sbjct: 136 DPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGD---DDTEINTKKIFVGGLP 118
+AL+ I G + + KG + + ++E KKI+V +
Sbjct: 195 RNALKQPQKKI-GSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253
Query: 119 LDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHK 174
++ G + + P+ DK TGRP+GF + S ++A L+ HK
Sbjct: 254 AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP-HK 308
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 143 (55.4 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRKLF+GG+S T EE+LR +F Q+ T+ +++R T RG GF +T +
Sbjct: 10 EPEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEM 69
Query: 62 EDALQHKHHVILGKEV 77
+ A+ + H + G+ V
Sbjct: 70 DAAMNARPHKVDGRVV 85
Score = 131 (51.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 8 KLF-VGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
K+F V G+ +T E LR+YF QY +E I+ R + R F FV F + +
Sbjct: 100 KIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFI 159
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
K+H + G EV+KA+ K S+ G
Sbjct: 160 QKYHTVNGHNCEVRKALSKQEMASASSSQRG 190
Score = 78 (32.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 109 TKKIF-VGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNV 167
T KIF V G+ D + ++ D+ + + R F F+TFD D+ + +
Sbjct: 98 TVKIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKI 157
Query: 168 LQTRFHKLKYKMVEVKRSHPKDRI 191
++H + EV+++ K +
Sbjct: 158 FIQKYHTVNGHNCEVRKALSKQEM 181
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 185 (70.2 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 52/162 (32%), Positives = 76/162 (46%)
Query: 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH- 67
LFVG +S EE L + F Q+G + I+ R TG RGFG+V FT + A A +
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGELSAR-IMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 68 KHHVILGKEVEVKKAIPK-GHK----LEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIX 122
K H I G+++ + A + +K +E + GD T + +FVG LP
Sbjct: 338 KEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQ-TSPESDTLFVGNLPFSAN 396
Query: 123 XXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAA 164
G V + D E+GRP+GFG++ + S D A
Sbjct: 397 EDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 175 (66.7 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 41/114 (35%), Positives = 61/114 (53%)
Query: 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDA 64
+LRKLFVGG+ T +ETLR YFSQYG V + +I++ + T RGFGFV F +
Sbjct: 53 ALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 112
Query: 65 LQHKHHVILGKEVEVKKAIPKGHKLEESN----GHSGNCVGDDDTEINTKKIFV 114
L + H + G+ ++ K+ P+ + + G NC G+ + KK V
Sbjct: 113 LASRPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNC-GETELREYFKKFGV 165
Score = 173 (66.0 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 55/182 (30%), Positives = 84/182 (46%)
Query: 15 SRETNEETLREYFS---QYGTVEETLIIRSRLTGHGRGFGFVIF----TKISMAEDALQH 67
+R+ + LR+ F + T +ETL RS + +G VI T S ++
Sbjct: 46 ARKAAQAALRKLFVGGLDWSTTQETL--RSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 103
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
K +G + + G ++ G D+++ N KIFVGG+P +
Sbjct: 104 KDPNCVGTVLASRPHTLDGRNIDPKQ--KGP--RSDNSKSN--KIFVGGIPHNCGETELR 157
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G VT+ +I D E RPRGFGFITF+ E + + + FH + K VEVKR+ P
Sbjct: 158 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 217
Query: 188 KD 189
+D
Sbjct: 218 RD 219
Score = 166 (63.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ E LREYF ++G V E ++I RGFGF+ F + A+
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 200
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
H I+GK+VEVK+A P+ K ++ G G
Sbjct: 201 HFHDIMGKKVEVKRAEPRDSK-SQAPGQPG 229
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 147 (56.8 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E + R +G RGF FV F +
Sbjct: 97 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDK 156
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H G V+K + K S+ G
Sbjct: 157 IVIQKYHAANGHNRVVRKTLWKQEMASASSSQRG 190
Score = 118 (46.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L+KLF+ G+S E +E+LR +F Q+GT+ + +++R T RGFG +M
Sbjct: 9 EPEQLQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFG-------AME 61
Query: 62 E-DALQHKHHVILGKEV-EVKKAI 83
E DA + +G+ V E K+A+
Sbjct: 62 EVDAAMNSRPCKVGRRVLEPKRAV 85
Score = 107 (42.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 107 INTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANN 166
+ KKIFVGG+ D G + + D+ +G+ RGF F+TFD D+ +
Sbjct: 97 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDK 156
Query: 167 VLQTRFH 173
++ ++H
Sbjct: 157 IVIQKYH 163
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 162 (62.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAI 83
+ + G+++ V + +
Sbjct: 67 MNGKSVDGRQIRVDQPL 83
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 159 (61.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Score = 121 (47.7 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 171 RFHKLKYKMVE---VKR-SHP 187
K++ +++ V R HP
Sbjct: 67 MNGKVRIRVLSRSPVSRMGHP 87
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 159 (61.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 159 (61.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+GG++ +TNEE+L + FS+YG + E ++++ R T RGFGFV F A+DA+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 68 KH-HVILGKEVEVKKA 82
+ + G+++ V +A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
Score = 114 (45.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+F+GGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAM 63
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 159 (61.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLF+GG++ ETNE+ L + F++YG + E ++++ R T RGFGFV F + A+DA+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A E G+ G G
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSG--ERRGGYRGGSSG 98
Score = 108 (43.1 bits), Expect = 0.00025, P = 0.00025
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+F+GGL + G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM 63
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 159 (61.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 51/171 (29%), Positives = 81/171 (47%)
Query: 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISM 60
ME + L+VG +SR+ E + + FSQ G + +I T + FV F +
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 61 AEDALQHKH-HVILGKEVEVKKAI-PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLP 118
A AL + I+GKEV+V A P K + S S V ++ + +FVG L
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTS---SSTVVSTQRSQDHFH-VFVGDLS 114
Query: 119 LDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+I G ++DA V+ D TG+ +G+GF++F ++ A N +Q
Sbjct: 115 PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
>UNIPROTKB|F1M5K3 [details] [associations]
symbol:F1M5K3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00567346
Ensembl:ENSRNOT00000044298 Uniprot:F1M5K3
Length = 327
Score = 145 (56.1 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 40/119 (33%), Positives = 61/119 (51%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
+P LRKLF+ G S ET E+LR +F ++GT + ++R T R FGFVI+ +
Sbjct: 29 DPEELRKLFIRG-SFETTNESLRSHFEEWGTFTDC-VMRDLNTKRFRDFGFVIYATVEEV 86
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD 120
+ A+ + + G+ VE K A+ + K + H + KKIFVGG+ D
Sbjct: 87 DAAMNARPRKVDGRLVEPKSAMSR-EKSQRPGAH-----------LTAKKIFVGGIKED 133
Score = 72 (30.4 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 141 VICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDRI 191
++ D+ +GR R F F+ FD D+ + ++ ++ + + EV+++ K +
Sbjct: 139 IMTDRGSGRKRDFAFVAFDDHDSVDKIVIQKYCTVNGQNCEVRKTLSKQEM 189
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 173 (66.0 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAED 63
++++K+FVGG+ +T E LR+YF QYG +E I+ R +G RGF FV F +
Sbjct: 66 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDK 125
Query: 64 ALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSG 97
+ K+H + G EV+KA+ K S+ G
Sbjct: 126 IVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 159
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 30/122 (24%), Positives = 56/122 (45%)
Query: 70 HVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXX 129
H + G+ VE K+A+ + E + G + KKIFVGG+ D
Sbjct: 41 HKVDGRVVEPKRAVSR-----EDSQRPG-------AHLTVKKIFVGGIKEDTEEHHLRDY 88
Query: 130 XXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKD 189
G + ++ + +G+ RGF F+TFD D+ + ++ ++H + EV+++ K
Sbjct: 89 FEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 148
Query: 190 RI 191
+
Sbjct: 149 EM 150
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 179 (68.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 36/106 (33%), Positives = 61/106 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG++ ET +++LR+YF Q+G V + ++R TG RGFGF+ F + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIF 113
+HH+ GK ++ K+AIP+ + + + G GD TE + F
Sbjct: 224 EHHLD-GKIIDPKRAIPREEQEKTAKMFVGGVPGDC-TEEEFRNFF 267
Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 44/130 (33%), Positives = 66/130 (50%)
Query: 79 VKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTD 138
V + + K H L+ + ++ E T K+FVGG+P D G V D
Sbjct: 217 VNEVMSKEHHLDGKIIDPKRAIPREEQE-KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLD 275
Query: 139 APVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK----DRIDKF 194
A ++ DK+TGRPRGFGF+T+++E A + + + K VEVKR+ PK D D+
Sbjct: 276 ATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRH 335
Query: 195 MNCYDCNNSN 204
+ Y N+N
Sbjct: 336 QHGYH-GNAN 344
Score = 166 (63.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGGV + EE R +F+Q+G V + ++ + TG RGFGFV + S E +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESN-----GHSGN 98
+ I GK VEVK+A PK L +S+ G+ GN
Sbjct: 308 PYITIHGKPVEVKRATPKA-SLRDSHDRHQHGYHGN 342
Score = 135 (52.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL + G V D V+ D TGR RGFGF+TF + N V+ +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 171 RFHKLKYKMVEVKRSHPKDRIDK 193
+ H L K+++ KR+ P++ +K
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK 245
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 158 (60.7 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T ++ L++YFS++G V + + +TG RGFGFV+F + + +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 68 KHHVILGKEVEVKKAIPKGHKLEE 91
K H + GK ++ K+A K K +E
Sbjct: 62 KEHKLNGKVIDPKRA--KAMKTKE 83
Score = 143 (55.4 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 34/101 (33%), Positives = 55/101 (54%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EPV +K+FVGG+S +T EE +REYF +G VE + T RGF F+ F +
Sbjct: 83 EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 140
Query: 62 EDALQHKHHVILGKEVEVKKAIPKG-HKLEESNGHSGNCVG 101
+ ++ K+H + + E+K A+ K ++ ++ G G G
Sbjct: 141 KKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAG 181
Score = 129 (50.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL D G V D + D TGR RGFGF+ F ++ + V+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 171 RFHKLKYKMVEVKRS 185
+ HKL K+++ KR+
Sbjct: 62 KEHKLNGKVIDPKRA 76
Score = 116 (45.9 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 38/123 (30%), Positives = 55/123 (44%)
Query: 72 ILGKEVE-VKKAIP-KGHKLEESNGH--SGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
+L KE E V K + K HKL NG T+ KKIFVGGL D
Sbjct: 47 VLFKESESVDKVMDQKEHKL---NGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 103
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187
G V + D +T + RGF FITF E+ +++ ++H + E+K +
Sbjct: 104 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 163
Query: 188 KDR 190
K++
Sbjct: 164 KEQ 166
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 174 (66.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 48/167 (28%), Positives = 79/167 (47%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ- 66
+L+VG + L + F + GTV + I+ ++T RGFGFV I A++A+Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 67 HKHHVILGKEVEVK-KAIPKGHKLEESNGHSGNCVGDDDTEI--NTKKIFVGGLPLDIXX 123
I G+ V+V +P+G + E + D++ + K++ G L ++
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTK----IRDNNRSYVDSPHKVYAGNLGWNLTS 232
Query: 124 XXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
V A VI ++ TGR RGFGFI+F+S + + L T
Sbjct: 233 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 38/133 (28%), Positives = 60/133 (45%)
Query: 37 LIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHS 96
LI+ S + H F T+ S A+D +Q + +E EV++ +G + E +
Sbjct: 55 LILHSNIRRHR--FFCAAETEASSADDEIQAS----VEEEEEVEEEGDEGEEEVEEEKQT 108
Query: 97 GNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFI 156
G++ +++VG LP I GTV D ++ DK T R RGFGF+
Sbjct: 109 TQASGEEG------RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Query: 157 TFDSEDAANNVLQ 169
T S + A +Q
Sbjct: 163 TMGSIEEAKEAMQ 175
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 168 (64.2 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 39/100 (39%), Positives = 53/100 (53%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KL+VGG+ +T E LR YF +YG +E ++ R +G RGF FV F + L
Sbjct: 115 VKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKIL 174
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESN----GHSGNCVG 101
Q KHH I G EV K + K + S G SGN +G
Sbjct: 175 Q-KHHAINGNNCEVGKVLSKEMQSAGSQRGRGGASGNFMG 213
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFT---KISMAE 62
LRKLF+GG+S ET +++LRE+F ++GT+ + RSR GFGF+ ++ ++ A
Sbjct: 31 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCGNKRSR------GFGFLTYSCVEEVDAAV 84
Query: 63 DALQHKHHV-ILGKE-VEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIF 113
A HK V ++GK V + ++ G L + G + +D E N + F
Sbjct: 85 CARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGG-IKEDTEEYNLRGYF 136
Score = 114 (45.2 bits), Expect = 0.00028, P = 0.00028
Identities = 35/142 (24%), Positives = 64/142 (45%)
Query: 48 RGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEI 107
RGFGF+ ++ + + A+ + H + V K+A+ + E + G +
Sbjct: 67 RGFGFLTYSCVEEVDAAVCARPHKAAVRVVG-KRAVSR-----EDSVKPG-------AHL 113
Query: 108 NTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNV 167
KK++VGG+ D G + V+ +++G+ RGF F+TFD D + +
Sbjct: 114 MVKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKI 173
Query: 168 LQTRFHKLKYKMVEVKRSHPKD 189
LQ + H + EV + K+
Sbjct: 174 LQ-KHHAINGNNCEVGKVLSKE 194
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 156 (60.0 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 32/91 (35%), Positives = 50/91 (54%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVGG+ + E LR+YF +YG +E ++ R +G RGF FV F D +
Sbjct: 92 KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVV 150
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNGHSGN 98
+H I G EV+KA+ K +++ + SG+
Sbjct: 151 NYHTINGHNCEVRKALSK-QEMQSAGSQSGH 180
Score = 136 (52.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 36/144 (25%), Positives = 67/144 (46%)
Query: 48 RGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEI 107
+ FGFV ++ + + A+ + H + G+ VE K+A+ + ++ H
Sbjct: 42 QSFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG-AHL----------- 89
Query: 108 NTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNV 167
T KIFVGG+ D G + V+ D+++G+ RGF F+TFD D + +
Sbjct: 90 -TVKIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 148
Query: 168 LQTRFHKLKYKMVEVKRSHPKDRI 191
+ +H + EV+++ K +
Sbjct: 149 V-VNYHTINGHNCEVRKALSKQEM 171
Score = 133 (51.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LR+LF+GG+S ET E++LRE F + GT+ + +++R + FGFV ++ +
Sbjct: 2 EPEQLRRLFIGGLSFETIEDSLREGF-EMGTLADCVVMRDP-----QSFGFVTYSCVEEV 55
Query: 62 EDALQHKHHVILGKEVEVKKAIPK 85
+ A+ + H + G+ VE K+A+ +
Sbjct: 56 DAAMCARPHKVDGRVVEPKRAVSR 79
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 156 (60.0 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T ++ L++YFS++G V + + +TG RGFGFV+F + + +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 68 KHHVILGKEVEVKKA 82
K H + GK ++ K+A
Sbjct: 139 KEHKLNGKVIDPKRA 153
Score = 129 (50.5 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+GGL D G V D + D TGR RGFGF+ F ++ + V+
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 171 RFHKLKYKMVEVKRS 185
+ HKL K+++ KR+
Sbjct: 139 KEHKLNGKVIDPKRA 153
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 168 (64.2 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 39/100 (39%), Positives = 53/100 (53%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
++KL+VGG+ +T E LR YF +YG +E ++ R +G RGF FV F + L
Sbjct: 85 VKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKIL 144
Query: 66 QHKHHVILGKEVEVKKAIPKGHKLEESN----GHSGNCVG 101
Q KHH I G EV K + K + S G SGN +G
Sbjct: 145 Q-KHHAINGNNCEVGKVLSKEMQSAGSQRGRGGASGNFMG 183
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFT---KISMAE 62
LRKLF+GG+S ET +++LRE+F ++GT+ + RSR GFGF+ ++ ++ A
Sbjct: 1 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCGNKRSR------GFGFLTYSCVEEVDAAV 54
Query: 63 DALQHKHHV-ILGKE-VEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIF 113
A HK V ++GK V + ++ G L + G + +D E N + F
Sbjct: 55 CARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGG-IKEDTEEYNLRGYF 106
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 35/142 (24%), Positives = 64/142 (45%)
Query: 48 RGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEI 107
RGFGF+ ++ + + A+ + H + V K+A+ + E + G +
Sbjct: 37 RGFGFLTYSCVEEVDAAVCARPHKAAVRVVG-KRAVSR-----EDSVKPG-------AHL 83
Query: 108 NTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNV 167
KK++VGG+ D G + V+ +++G+ RGF F+TFD D + +
Sbjct: 84 MVKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKI 143
Query: 168 LQTRFHKLKYKMVEVKRSHPKD 189
LQ + H + EV + K+
Sbjct: 144 LQ-KHHAINGNNCEVGKVLSKE 164
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 155 (59.6 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +T+E+ L FS+YG ++E ++++ R T RGFGFV F A+DA+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A + + G+ G G
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSN--DRRGGYRGGSSG 99
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDS-EDA 163
K+FVGGL D G + + V+ D+ET R RGFGF+TF++ EDA
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA 60
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 175 (66.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/201 (22%), Positives = 94/201 (46%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
RK+FV G+ +T ++L + F QYG +E+ + +++G +G+GF++F S A +AL+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 67 HKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINT-KKIFVGGLPLDIXXXX 125
K++ + + + G+ N +KI+V + DI
Sbjct: 188 QPQ-----KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQK 242
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G + + P+ DK TGRP+GF + S ++A L+ + ++ ++
Sbjct: 243 LLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
Query: 186 H--PKDRIDKFMNCYDCNNSN 204
+ PK ++ + + ++ +N N
Sbjct: 303 NDGPK-QVKQHQHNHNSHNQN 322
>UNIPROTKB|F1SP49 [details] [associations]
symbol:F1SP49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104376
EMBL:FP016004 Ensembl:ENSSSCT00000005972 OMA:SHTANGH
ArrayExpress:F1SP49 Uniprot:F1SP49
Length = 162
Score = 154 (59.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 35/102 (34%), Positives = 54/102 (52%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP LRK+F+GG+S ET +E LR + Q+GT+ + ++ R T RGF FV +T +
Sbjct: 16 EPEQLRKVFLGGLSFETTDERLRSHSEQWGTLTDCVVRRDPNTKRSRGFRFVTYTTVEEV 75
Query: 62 EDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDD 103
+ A+ + H + G+ VE + G G G G+D
Sbjct: 76 DTAMNTRPHKVDGRVVEPSQRGRSGSG-NFGGGRGGGFGGND 116
Score = 116 (45.9 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 110 KKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
+K+F+GGL + GT+TD V D T R RGF F+T+ + + + +
Sbjct: 21 RKVFLGGLSFETTDERLRSHSEQWGTLTDCVVRRDPNTKRSRGFRFVTYTTVEEVDTAMN 80
Query: 170 TRFHKLKYKMVE 181
TR HK+ ++VE
Sbjct: 81 TRPHKVDGRVVE 92
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 170 (64.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A S G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAG 99
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 169 (64.5 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
++FVGG+S + E L F +YG + E I+ R TG RGFGF+ FT A+DA++H
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 68 KHHVILG-KEVEVKKAIPK--GH---KLEESNGHSGNCVGDDD 104
H LG K + V KA PK G +L++ G+S G +D
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTED 115
Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 102 DDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSE 161
++D + ++ IFVGGL D+ G +T+ ++ ++TGRPRGFGFITF
Sbjct: 5 ENDGNLESR-IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 162 DAANNVLQTRFH--KLKYKMVEVKRSHPK 188
A++ ++ H +L K++ V ++ PK
Sbjct: 64 RGADDAIK-HMHGRELGNKVISVNKAEPK 91
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 153 (58.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68
+F+GG+S +T ++ L++YFS++G V + + +TG RGFGFV+F + + + K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 69 HHVILGKEVEVKKAIPKGHKLEE 91
H + GK ++ K+A K K +E
Sbjct: 61 EHKLNGKVIDPKRA--KAMKTKE 81
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 112 IFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTR 171
+F+GGL D G V D + D TGR RGFGF+ F ++ + V+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 172 FHKLKYKMVEVKRS 185
HKL K+++ KR+
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 93 (37.8 bits), Expect = 0.00058, P = 0.00058
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVE 34
EPV +K+FVGG+S +T EE +REYF +G VE
Sbjct: 81 EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVE 111
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 153 (58.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG++ ET EE+L + FS+YG V E ++++ R + RGFGFV F A+DA+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVG 101
+ + G+++ V +A + + G+ G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSN--DRRGGYRGGSSG 99
Score = 106 (42.4 bits), Expect = 0.00049, P = 0.00049
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDS-EDAANNVLQ 169
K+FVGGL + G V + V+ D+E+ R RGFGF+TF++ EDA + ++
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 170 TRFHKLKYKMVEVKRS 185
+ + + V ++
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 166 (63.5 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 37/100 (37%), Positives = 58/100 (58%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S +TNE++L + FS+YG + E ++++ R T RGFGFV F I A+DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 68 KH-HVILGKEVEVKKAI--PKGHKLEESNGHSGNCVGDDD 104
+ + G+++ V +A +G+ SG G D
Sbjct: 67 MNGKSVDGRQIRVDQAGGGDRGYGGNRFESRSGGYGGSRD 106
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+FVGGL D G +++ V+ D+ET R RGFGF+TF++ D A + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 171 RFHK-LKYKMVEVKRSHPKDR 190
K + + + V ++ DR
Sbjct: 67 MNGKSVDGRQIRVDQAGGGDR 87
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 158 (60.7 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T ++ L++YFS++G V + + +TG RGFGFV+F + + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 68 KHHVILGKEVEVKKAIPKGHKLEE 91
K H + GK ++ K+A K K +E
Sbjct: 158 KEHKLNGKVIDPKRA--KAMKTKE 179
Score = 142 (55.0 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 35/115 (30%), Positives = 52/115 (45%)
Query: 74 GKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTK---KIFVGGLPLDIXXXXXXXXX 130
G E + A K EE GHS + + + K+F+GGL D
Sbjct: 58 GGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYF 117
Query: 131 XXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185
G V D + D TGR RGFGF+ F ++ + V+ + HKL K+++ KR+
Sbjct: 118 SKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 151 (58.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG++ T+E+ L ++FS +G + E ++++ R T RGFGF+ FT A DA++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 68 KHHVIL-GKEVEVKKA 82
+ L G+++ V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 107 (42.7 bits), Expect = 0.00012, P = 0.00012
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
K+FVGGL + G +++ V+ D+ET R RGFGFITF + + A++ ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 151 (58.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG++ T+E+ L ++FS +G + E ++++ R T RGFGF+ FT A DA++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 68 KHHVIL-GKEVEVKKA 82
+ L G+++ V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
K+FVGGL + G +++ V+ D+ET R RGFGFITF + + A++ ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 137 (53.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQ 66
RKLF+G +S++ NEE LRE F+++G +E+ ++R + G RG FV FT S A A +
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATK 200
Query: 67 HKHH 70
HH
Sbjct: 201 EMHH 204
Score = 122 (48.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 45/159 (28%), Positives = 69/159 (43%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+FVG + R+ NE R F +YG+V I+R + T +G FV F H
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF----------YH 105
Query: 68 KHHVILGKEVEVKKAIPKGHKLEESNG-HSGNCVGDDDTEI-NTKKIFVGGLPLDIXXXX 125
+ I E + A+ H ++ G H + DTE N +K+F+G L
Sbjct: 106 RKDAI-----EAQGAL---HNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEEN 157
Query: 126 XXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAA 164
G + D V+ D++ G+ RG F+TF + A
Sbjct: 158 LREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCA 195
Score = 81 (33.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 25/98 (25%), Positives = 45/98 (45%)
Query: 100 VGDDDTE-INTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITF 158
VG+ D + + +F+ LP D G + A V DK T + FGF+++
Sbjct: 492 VGNGDVKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSY 551
Query: 159 DSEDAANNVL------QTRFHKLKYKMVEVKRSHPKDR 190
++ +A N + Q +LK ++ +V R +P +R
Sbjct: 552 ENAQSATNAISAMNGFQIGSKRLKVQL-KVDRGNPYNR 588
Score = 38 (18.4 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 234 GSPSAGRGGLLVPANP 249
GSP G LL NP
Sbjct: 240 GSPKGGAASLLQNLNP 255
>UNIPROTKB|F1PD64 [details] [associations]
symbol:F1PD64 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03002771
Ensembl:ENSCAFT00000021102 Uniprot:F1PD64
Length = 256
Score = 164 (62.8 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMA 61
EP L KLF+ G+S ET E+LR +F Q+GT+ + + +R T H RG GFV + +
Sbjct: 9 EPEQLWKLFIRGLSFETTNESLRSHFEQWGTLTDWVAMRDPNTKHSRGLGFVTYATVEEV 68
Query: 62 EDALQHKHHVILGKEVEVKKAIPK 85
+ A+ + H + G+ VE K+A+ +
Sbjct: 69 DAAMNTRPHKVDGRVVEPKRAVSR 92
Score = 110 (43.8 bits), Expect = 0.00085, P = 0.00085
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170
K+F+ GL + GT+TD + D T RG GF+T+ + + + + T
Sbjct: 15 KLFIRGLSFETTNESLRSHFEQWGTLTDWVAMRDPNTKHSRGLGFVTYATVEEVDAAMNT 74
Query: 171 RFHKLKYKMVEVKRS------HPK-DRIDKFMNC 197
R HK+ ++VE KR+ H K +K+ NC
Sbjct: 75 RPHKVDGRVVEPKRAVSRQDCHKKIPYCEKYHNC 108
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 150 (57.9 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 90 EESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGR 149
+ SNG + +G + K+FVGGL G VT+A VI D+ETGR
Sbjct: 17 QSSNGPVTSMLGS--LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGR 74
Query: 150 PRGFGFITFDSEDAANNVLQ 169
RGFGF++F ED+ANN ++
Sbjct: 75 SRGFGFVSFSCEDSANNAIK 94
Score = 142 (55.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
KLFVGG+S T++ +L++ F+ +G V E +I R TG RGFGFV F+ A +A++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 68 KHHVIL-GKEVEVKKAIPKGHKLEESNGHSGNCVG 101
L G+++ V A + S G G G
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSFGGGGGYGG 130
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 150 (57.9 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67
K+F+GG+S +T+ ++LR+YFS++G + E +++R T RGFGFV F + + L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 68 KHHVILGKEVEVKKAI 83
HH + K +K +
Sbjct: 82 PHHELDSKTCRRQKRL 97
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 91 ESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRP 150
E+NG G +D++ + K+F+GGL G + + V+ D T R
Sbjct: 2 EANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
Query: 151 RGFGFITFDSEDAANNVLQTRFHKLKYK 178
RGFGF+TF + + VL H+L K
Sbjct: 62 RGFGFVTFADPASVDKVLGQPHHELDSK 89
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 150 (57.9 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65
+ KLF+GG++ T ++ LRE FS+YGT+EE ++++ R T RGFGFV F A+ A+
Sbjct: 1 MAKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAM 60
Query: 66 QHKHHVIL-GKEVEVKKA 82
++ G+ + V KA
Sbjct: 61 GAMNNQEFDGRIIRVDKA 78
Score = 104 (41.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 111 KIFVGGLPLDIXXXXXXXXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165
K+F+GGL GT+ +A V+ D++T R RGFGF+ F SE A+
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEAD 57
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 168 (64.2 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 47/162 (29%), Positives = 71/162 (43%)
Query: 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68
LFVG +S ++ L+ F G V +I R TG RG+G+V F S AE AL+
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 69 H-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
I G+ + + + K H +SN GD + + +F+G L +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHA-SKSNNDRAKQYGDSQSP-PSDTLFIGNLSFNANRDNLF 287
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
G V V +T +P+GFG++ F S D A L+
Sbjct: 288 NVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALE 329
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 168 (64.2 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 47/162 (29%), Positives = 71/162 (43%)
Query: 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68
LFVG +S ++ L+ F G V +I R TG RG+G+V F S AE AL+
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 69 H-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIXXXXXX 127
I G+ + + + K H +SN GD + + +F+G L +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHA-SKSNNDRAKQYGDSQSP-PSDTLFIGNLSFNANRDNLF 287
Query: 128 XXXXXXGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169
G V V +T +P+GFG++ F S D A L+
Sbjct: 288 NVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALE 329
WARNING: HSPs involving 683 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 347 315 0.00082 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 933
No. of states in DFA: 588 (63 KB)
Total size of DFA: 211 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.30u 0.12s 24.42t Elapsed: 00:00:01
Total cpu time: 24.34u 0.12s 24.46t Elapsed: 00:00:01
Start: Fri May 10 01:25:38 2013 End: Fri May 10 01:25:39 2013
WARNINGS ISSUED: 2