Query 038933
Match_columns 347
No_of_seqs 332 out of 2857
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3E-36 6.6E-41 282.7 25.3 170 3-190 104-277 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.1E-31 6.8E-36 252.2 23.4 186 5-190 2-351 (352)
3 KOG0148 Apoptosis-promoting RN 100.0 3.9E-31 8.5E-36 229.0 19.4 178 7-192 63-242 (321)
4 TIGR01645 half-pint poly-U bin 100.0 1E-30 2.2E-35 257.8 21.2 178 5-189 106-285 (612)
5 KOG4211 Splicing factor hnRNP- 100.0 4.7E-30 1E-34 239.0 22.9 178 3-191 7-185 (510)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 1.9E-29 4.1E-34 248.5 26.4 180 3-191 55-310 (578)
7 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-29 2.8E-34 249.3 21.8 180 3-188 86-266 (457)
8 KOG0117 Heterogeneous nuclear 100.0 1.2E-28 2.7E-33 226.6 24.4 182 3-192 80-335 (506)
9 TIGR01628 PABP-1234 polyadenyl 100.0 2E-28 4.4E-33 246.6 22.8 184 5-190 177-366 (562)
10 KOG4205 RNA-binding protein mu 100.0 2.1E-28 4.5E-33 223.5 18.7 182 1-194 1-182 (311)
11 TIGR01628 PABP-1234 polyadenyl 100.0 8.7E-28 1.9E-32 242.0 19.4 163 8-187 2-166 (562)
12 KOG0144 RNA-binding protein CU 99.9 2.2E-27 4.8E-32 217.4 12.3 172 3-192 31-210 (510)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1E-25 2.2E-30 224.6 21.3 179 4-188 173-375 (509)
14 KOG0127 Nucleolar protein fibr 99.9 8E-26 1.7E-30 212.4 17.3 185 6-191 117-381 (678)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.8E-25 8.3E-30 218.3 20.9 169 5-189 1-175 (481)
16 KOG0127 Nucleolar protein fibr 99.9 2.2E-25 4.7E-30 209.5 16.8 187 4-191 3-199 (678)
17 KOG0145 RNA-binding protein EL 99.9 6.3E-25 1.4E-29 189.5 17.9 168 4-189 39-210 (360)
18 KOG0131 Splicing factor 3b, su 99.9 1.7E-25 3.7E-30 183.7 11.9 172 3-191 6-180 (203)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.6E-24 5.6E-29 214.5 21.5 184 5-188 294-502 (509)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.8E-24 6.1E-29 212.1 20.9 177 5-188 274-480 (481)
21 TIGR01622 SF-CC1 splicing fact 99.9 4.6E-22 1E-26 195.7 21.2 180 6-189 186-449 (457)
22 KOG0109 RNA-binding protein LA 99.9 5.6E-23 1.2E-27 180.1 11.9 150 7-192 3-154 (346)
23 KOG0124 Polypyrimidine tract-b 99.9 3E-23 6.5E-28 186.7 8.0 177 6-189 113-291 (544)
24 KOG0145 RNA-binding protein EL 99.9 6.5E-22 1.4E-26 170.9 14.2 184 5-188 126-358 (360)
25 KOG0123 Polyadenylate-binding 99.9 1.3E-21 2.8E-26 185.0 15.6 154 7-192 2-157 (369)
26 KOG0148 Apoptosis-promoting RN 99.9 7.1E-22 1.5E-26 171.7 10.4 142 1-189 1-143 (321)
27 KOG4211 Splicing factor hnRNP- 99.9 6.4E-20 1.4E-24 171.5 21.7 179 5-186 102-356 (510)
28 KOG0147 Transcriptional coacti 99.9 3.1E-22 6.8E-27 189.2 6.2 185 2-190 175-360 (549)
29 KOG0110 RNA-binding protein (R 99.8 2.8E-20 6E-25 180.5 13.3 174 8-190 517-695 (725)
30 PLN03134 glycine-rich RNA-bind 99.8 6.3E-19 1.4E-23 145.8 15.8 85 106-190 31-116 (144)
31 KOG0144 RNA-binding protein CU 99.8 5.4E-20 1.2E-24 169.1 10.0 183 5-188 123-504 (510)
32 KOG0123 Polyadenylate-binding 99.8 2.1E-19 4.6E-24 169.9 13.5 172 4-189 74-247 (369)
33 KOG0146 RNA-binding protein ET 99.8 2.7E-19 5.8E-24 155.3 9.6 186 5-191 18-368 (371)
34 KOG0105 Alternative splicing f 99.8 2.6E-17 5.5E-22 135.9 17.9 159 2-170 2-169 (241)
35 TIGR01645 half-pint poly-U bin 99.8 2.7E-17 5.9E-22 163.0 21.0 80 5-84 203-283 (612)
36 PLN03134 glycine-rich RNA-bind 99.7 2.6E-17 5.6E-22 136.2 11.6 82 4-85 32-114 (144)
37 KOG4212 RNA-binding protein hn 99.7 6.1E-16 1.3E-20 142.7 15.3 177 6-184 44-290 (608)
38 KOG1365 RNA-binding protein Fu 99.7 6.2E-17 1.3E-21 147.0 6.4 183 6-190 161-364 (508)
39 KOG4206 Spliceosomal protein s 99.7 2.1E-15 4.7E-20 129.0 15.3 174 4-185 7-219 (221)
40 KOG0147 Transcriptional coacti 99.7 4.2E-16 9E-21 148.0 11.9 177 7-188 279-528 (549)
41 TIGR01648 hnRNP-R-Q heterogene 99.7 1.7E-15 3.8E-20 149.9 15.7 122 6-135 233-367 (578)
42 KOG0149 Predicted RNA-binding 99.7 1.9E-16 4.1E-21 135.8 7.2 81 4-84 10-90 (247)
43 KOG0106 Alternative splicing f 99.6 1.1E-15 2.3E-20 132.1 11.2 163 7-185 2-168 (216)
44 KOG0149 Predicted RNA-binding 99.6 1.7E-15 3.7E-20 130.0 8.2 82 106-187 9-90 (247)
45 KOG0110 RNA-binding protein (R 99.6 7.7E-15 1.7E-19 143.0 13.4 178 3-186 382-596 (725)
46 KOG1548 Transcription elongati 99.6 4.1E-14 8.9E-19 127.5 16.8 181 2-187 130-351 (382)
47 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4.9E-15 1.1E-19 140.9 11.4 81 6-86 269-350 (352)
48 COG0724 RNA-binding proteins ( 99.6 2.1E-14 4.6E-19 130.2 14.2 153 6-158 115-274 (306)
49 PF00076 RRM_1: RNA recognitio 99.6 9.6E-15 2.1E-19 105.3 8.6 69 9-78 1-70 (70)
50 PF14259 RRM_6: RNA recognitio 99.6 1.4E-14 3.1E-19 104.8 9.2 69 9-78 1-70 (70)
51 PF00076 RRM_1: RNA recognitio 99.6 2.8E-14 6E-19 102.9 9.0 69 112-181 1-70 (70)
52 KOG1456 Heterogeneous nuclear 99.5 1.5E-12 3.3E-17 118.3 21.1 165 3-189 28-200 (494)
53 TIGR01659 sex-lethal sex-letha 99.5 2.1E-14 4.6E-19 135.2 9.6 85 104-188 102-187 (346)
54 KOG0122 Translation initiation 99.5 4.1E-14 8.8E-19 122.0 9.1 82 4-85 187-269 (270)
55 PF14259 RRM_6: RNA recognitio 99.5 8.4E-14 1.8E-18 100.7 9.3 69 112-181 1-70 (70)
56 KOG1457 RNA binding protein (c 99.5 1.3E-13 2.9E-18 117.2 11.9 163 3-169 31-266 (284)
57 PLN03120 nucleic acid binding 99.5 8.3E-14 1.8E-18 123.5 10.6 79 5-86 3-81 (260)
58 KOG0113 U1 small nuclear ribon 99.5 2.6E-13 5.6E-18 120.1 13.3 88 106-193 98-186 (335)
59 KOG1190 Polypyrimidine tract-b 99.5 4.3E-14 9.3E-19 129.7 8.7 173 4-187 26-227 (492)
60 KOG0122 Translation initiation 99.5 6.4E-14 1.4E-18 120.8 8.6 83 106-188 186-269 (270)
61 KOG0129 Predicted RNA-binding 99.5 3.6E-13 7.9E-18 127.4 14.0 183 3-186 256-452 (520)
62 KOG0121 Nuclear cap-binding pr 99.5 7E-14 1.5E-18 109.0 7.5 80 107-186 34-114 (153)
63 PLN03120 nucleic acid binding 99.5 1.3E-13 2.7E-18 122.4 9.4 77 109-188 4-80 (260)
64 KOG4207 Predicted splicing fac 99.5 2E-13 4.3E-18 114.9 8.9 86 104-189 8-94 (256)
65 KOG0113 U1 small nuclear ribon 99.4 3E-13 6.6E-18 119.7 9.2 85 4-88 99-184 (335)
66 KOG0125 Ataxin 2-binding prote 99.4 2.6E-13 5.7E-18 121.5 8.4 84 106-191 93-177 (376)
67 KOG0105 Alternative splicing f 99.4 6.1E-13 1.3E-17 110.1 9.5 76 108-186 5-81 (241)
68 KOG0107 Alternative splicing f 99.4 3.2E-13 6.9E-18 111.0 7.8 79 4-87 8-87 (195)
69 KOG0121 Nuclear cap-binding pr 99.4 3.3E-13 7.2E-18 105.2 6.5 83 4-86 34-117 (153)
70 PLN03121 nucleic acid binding 99.4 1.2E-12 2.5E-17 114.5 10.3 80 5-87 4-83 (243)
71 KOG1190 Polypyrimidine tract-b 99.4 7.7E-12 1.7E-16 115.1 16.0 172 6-187 297-490 (492)
72 PLN03213 repressor of silencin 99.4 3E-13 6.5E-18 126.8 6.7 77 4-84 8-87 (759)
73 PLN03121 nucleic acid binding 99.4 1.3E-12 2.7E-17 114.3 9.8 78 108-188 4-81 (243)
74 KOG0124 Polypyrimidine tract-b 99.4 5.8E-12 1.2E-16 114.3 14.2 180 5-184 209-531 (544)
75 smart00362 RRM_2 RNA recogniti 99.4 2.1E-12 4.6E-17 92.5 9.1 71 8-80 1-72 (72)
76 KOG0107 Alternative splicing f 99.4 4.1E-12 8.8E-17 104.5 11.6 78 108-190 9-87 (195)
77 KOG1365 RNA-binding protein Fu 99.4 4.6E-13 9.9E-18 122.1 6.0 182 5-189 59-244 (508)
78 KOG0120 Splicing factor U2AF, 99.4 4.5E-12 9.8E-17 122.1 12.9 185 4-188 287-492 (500)
79 KOG4212 RNA-binding protein hn 99.4 2E-11 4.3E-16 113.2 16.2 73 107-184 534-607 (608)
80 KOG0125 Ataxin 2-binding prote 99.4 1.5E-12 3.2E-17 116.7 7.7 83 5-89 95-178 (376)
81 smart00360 RRM RNA recognition 99.4 3.9E-12 8.4E-17 90.7 8.3 70 11-80 1-71 (71)
82 KOG0126 Predicted RNA-binding 99.3 2.4E-13 5.1E-18 112.3 1.3 81 107-187 33-114 (219)
83 KOG4207 Predicted splicing fac 99.3 2E-12 4.2E-17 109.0 6.4 80 4-83 11-91 (256)
84 smart00362 RRM_2 RNA recogniti 99.3 7.2E-12 1.6E-16 89.7 8.5 71 111-183 1-72 (72)
85 KOG0117 Heterogeneous nuclear 99.3 1.3E-11 2.8E-16 114.9 12.1 122 55-188 41-164 (506)
86 KOG0111 Cyclophilin-type pepti 99.3 2.2E-12 4.7E-17 109.6 5.9 85 106-190 7-92 (298)
87 KOG0126 Predicted RNA-binding 99.3 5.1E-13 1.1E-17 110.3 1.6 83 4-86 33-116 (219)
88 smart00360 RRM RNA recognition 99.3 7.8E-12 1.7E-16 89.1 7.5 70 114-183 1-71 (71)
89 PLN03213 repressor of silencin 99.3 6.7E-12 1.5E-16 117.9 8.9 78 107-188 8-88 (759)
90 KOG0130 RNA-binding protein RB 99.3 5.3E-12 1.1E-16 99.4 6.9 86 105-190 68-154 (170)
91 KOG0130 RNA-binding protein RB 99.3 3.9E-12 8.6E-17 100.1 6.2 80 8-87 74-154 (170)
92 KOG0116 RasGAP SH3 binding pro 99.3 2.9E-11 6.2E-16 115.2 13.1 82 107-188 286-367 (419)
93 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.5E-16 87.7 9.5 73 8-81 1-74 (74)
94 KOG0114 Predicted RNA-binding 99.3 1.2E-11 2.6E-16 93.0 8.2 82 1-85 13-95 (124)
95 KOG0108 mRNA cleavage and poly 99.3 6.8E-12 1.5E-16 120.1 7.8 81 7-87 19-100 (435)
96 cd00590 RRM RRM (RNA recogniti 99.2 6.6E-11 1.4E-15 85.1 9.1 73 111-184 1-74 (74)
97 KOG0120 Splicing factor U2AF, 99.2 2.4E-11 5.3E-16 117.0 8.3 180 5-190 174-371 (500)
98 KOG0114 Predicted RNA-binding 99.2 6.1E-11 1.3E-15 89.3 8.1 82 105-189 14-96 (124)
99 KOG0131 Splicing factor 3b, su 99.2 2.2E-11 4.8E-16 100.8 5.8 80 107-186 7-87 (203)
100 COG0724 RNA-binding proteins ( 99.2 7.2E-11 1.6E-15 106.9 9.3 79 109-187 115-194 (306)
101 KOG0111 Cyclophilin-type pepti 99.2 2.3E-11 5.1E-16 103.4 5.3 85 4-88 8-93 (298)
102 KOG0108 mRNA cleavage and poly 99.2 4.6E-11 1E-15 114.5 7.6 82 110-191 19-101 (435)
103 KOG4210 Nuclear localization s 99.1 8.6E-11 1.9E-15 107.6 7.1 178 5-190 87-266 (285)
104 KOG0128 RNA-binding protein SA 99.1 9.9E-12 2.1E-16 123.7 0.0 148 5-187 666-814 (881)
105 smart00361 RRM_1 RNA recogniti 99.1 3.6E-10 7.9E-15 81.7 7.8 60 20-79 2-69 (70)
106 smart00361 RRM_1 RNA recogniti 99.1 3E-10 6.6E-15 82.1 7.2 60 123-182 2-69 (70)
107 KOG4205 RNA-binding protein mu 99.1 1.1E-10 2.4E-15 107.3 4.8 86 108-193 5-90 (311)
108 PF13893 RRM_5: RNA recognitio 99.1 7.7E-10 1.7E-14 76.2 7.3 55 126-185 1-56 (56)
109 PF13893 RRM_5: RNA recognitio 99.0 1E-09 2.2E-14 75.6 7.2 55 23-82 1-56 (56)
110 KOG0153 Predicted RNA-binding 99.0 1E-09 2.3E-14 99.4 7.9 77 2-84 224-302 (377)
111 KOG0109 RNA-binding protein LA 99.0 8.1E-10 1.7E-14 97.9 6.0 72 110-189 3-75 (346)
112 KOG0415 Predicted peptidyl pro 99.0 8.7E-10 1.9E-14 100.0 6.0 85 105-189 235-320 (479)
113 KOG0132 RNA polymerase II C-te 99.0 1.2E-09 2.7E-14 107.8 7.2 109 5-132 420-529 (894)
114 KOG4454 RNA binding protein (R 98.9 1.8E-10 3.9E-15 98.0 1.0 137 3-169 6-143 (267)
115 KOG1456 Heterogeneous nuclear 98.9 4.8E-08 1E-12 89.4 15.8 167 5-178 286-475 (494)
116 KOG0415 Predicted peptidyl pro 98.9 1.7E-09 3.7E-14 98.1 6.3 81 4-84 237-318 (479)
117 KOG4208 Nucleolar RNA-binding 98.9 3.3E-09 7.1E-14 89.9 7.5 82 4-85 47-130 (214)
118 KOG4307 RNA binding protein RB 98.9 3.1E-09 6.8E-14 103.8 7.1 182 5-188 310-514 (944)
119 KOG4208 Nucleolar RNA-binding 98.9 6.2E-09 1.3E-13 88.2 7.4 83 106-188 46-130 (214)
120 KOG0153 Predicted RNA-binding 98.8 1.1E-08 2.4E-13 92.8 8.8 79 103-187 222-302 (377)
121 KOG0146 RNA-binding protein ET 98.8 5.7E-09 1.2E-13 91.4 5.2 85 2-86 281-366 (371)
122 KOG0112 Large RNA-binding prot 98.8 3.7E-09 8.1E-14 106.1 4.0 161 2-189 368-532 (975)
123 KOG4661 Hsp27-ERE-TATA-binding 98.7 2E-08 4.4E-13 96.2 7.4 81 5-85 404-485 (940)
124 KOG0226 RNA-binding proteins [ 98.7 5.4E-09 1.2E-13 91.1 3.0 167 10-189 100-271 (290)
125 KOG4206 Spliceosomal protein s 98.7 3.3E-08 7.3E-13 85.1 7.1 80 108-190 8-92 (221)
126 KOG4307 RNA binding protein RB 98.7 3.5E-07 7.5E-12 89.8 14.6 80 109-189 311-390 (944)
127 KOG0116 RasGAP SH3 binding pro 98.6 7.2E-08 1.6E-12 92.2 7.4 79 5-83 287-365 (419)
128 KOG0132 RNA polymerase II C-te 98.6 1E-07 2.2E-12 94.7 7.4 80 107-192 419-499 (894)
129 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.3E-07 2.8E-12 90.8 7.8 84 107-190 403-487 (940)
130 KOG4209 Splicing factor RNPS1, 98.6 1.2E-07 2.7E-12 84.1 7.0 84 105-188 97-180 (231)
131 KOG4209 Splicing factor RNPS1, 98.6 7.7E-08 1.7E-12 85.5 5.6 84 2-85 97-180 (231)
132 KOG0533 RRM motif-containing p 98.5 2.7E-07 6E-12 81.9 8.2 85 106-191 80-165 (243)
133 KOG0533 RRM motif-containing p 98.5 2.8E-07 6.2E-12 81.8 7.8 82 4-86 81-163 (243)
134 KOG2193 IGF-II mRNA-binding pr 98.5 9.8E-09 2.1E-13 95.2 -1.6 153 7-190 2-159 (584)
135 KOG1995 Conserved Zn-finger pr 98.5 7.7E-07 1.7E-11 81.6 10.1 86 105-190 62-156 (351)
136 KOG4660 Protein Mei2, essentia 98.5 9.7E-08 2.1E-12 91.8 4.4 170 3-184 72-246 (549)
137 KOG1548 Transcription elongati 98.5 5.8E-07 1.2E-11 81.8 8.0 82 106-188 131-221 (382)
138 KOG0226 RNA-binding proteins [ 98.5 1.3E-07 2.8E-12 82.6 3.6 84 3-86 187-271 (290)
139 KOG4676 Splicing factor, argin 98.4 1.6E-07 3.6E-12 86.4 4.2 168 5-176 6-214 (479)
140 PF04059 RRM_2: RNA recognitio 98.4 1.4E-06 3.1E-11 66.4 8.1 78 7-84 2-86 (97)
141 KOG4849 mRNA cleavage factor I 98.2 3.4E-05 7.4E-10 70.4 13.5 78 107-184 78-158 (498)
142 KOG4454 RNA binding protein (R 98.2 1E-06 2.2E-11 75.4 2.4 77 107-185 7-84 (267)
143 KOG0151 Predicted splicing reg 98.1 7.2E-06 1.6E-10 81.0 7.0 82 3-84 171-256 (877)
144 KOG1457 RNA binding protein (c 98.0 3.7E-05 8E-10 66.2 9.8 89 105-193 30-123 (284)
145 PF04059 RRM_2: RNA recognitio 98.0 3.1E-05 6.8E-10 59.1 8.2 79 110-188 2-87 (97)
146 PF08777 RRM_3: RNA binding mo 98.0 1.6E-05 3.5E-10 61.9 6.5 69 110-184 2-76 (105)
147 KOG0106 Alternative splicing f 98.0 7.6E-06 1.6E-10 71.3 4.8 70 110-187 2-72 (216)
148 KOG0128 RNA-binding protein SA 98.0 5.7E-07 1.2E-11 90.4 -2.9 165 5-177 570-735 (881)
149 KOG4660 Protein Mei2, essentia 97.9 1E-05 2.2E-10 78.1 3.8 71 106-181 72-143 (549)
150 PF11608 Limkain-b1: Limkain b 97.8 5.8E-05 1.2E-09 55.2 5.1 69 7-85 3-77 (90)
151 KOG1995 Conserved Zn-finger pr 97.7 2.1E-05 4.7E-10 72.3 3.5 83 4-86 64-155 (351)
152 PF08777 RRM_3: RNA binding mo 97.7 8.5E-05 1.8E-09 57.9 5.5 57 7-69 2-58 (105)
153 KOG0151 Predicted splicing reg 97.7 0.00013 2.8E-09 72.4 7.7 83 105-187 170-256 (877)
154 KOG4210 Nuclear localization s 97.7 3.2E-05 7E-10 71.1 3.3 81 6-86 184-265 (285)
155 KOG4849 mRNA cleavage factor I 97.6 5.3E-05 1.2E-09 69.2 3.1 75 8-82 82-159 (498)
156 PF11608 Limkain-b1: Limkain b 97.5 0.00052 1.1E-08 50.3 7.4 68 110-187 3-76 (90)
157 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00018 3.9E-09 48.7 4.7 52 110-168 2-53 (53)
158 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00021 4.6E-09 48.3 4.8 53 6-65 1-53 (53)
159 KOG1855 Predicted RNA-binding 97.5 0.001 2.2E-08 62.6 10.4 67 105-171 227-306 (484)
160 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0015 3.2E-08 50.3 7.2 80 3-83 3-90 (100)
161 KOG0129 Predicted RNA-binding 97.2 0.00093 2E-08 64.4 7.4 80 4-83 368-452 (520)
162 KOG1855 Predicted RNA-binding 97.1 0.00038 8.1E-09 65.5 3.6 69 2-70 227-308 (484)
163 COG5175 MOT2 Transcriptional r 97.1 0.00099 2.1E-08 60.9 6.0 81 108-188 113-203 (480)
164 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0032 7E-08 48.4 7.9 76 109-185 6-89 (100)
165 COG5175 MOT2 Transcriptional r 96.7 0.0037 7.9E-08 57.3 6.0 78 7-84 115-202 (480)
166 PF08952 DUF1866: Domain of un 96.7 0.0095 2.1E-07 48.7 7.8 58 125-190 52-109 (146)
167 PF10309 DUF2414: Protein of u 96.6 0.0098 2.1E-07 41.3 6.5 57 4-68 3-62 (62)
168 KOG0115 RNA-binding protein p5 96.6 0.0043 9.4E-08 54.8 5.6 84 61-170 7-91 (275)
169 KOG2314 Translation initiation 96.5 0.0063 1.4E-07 59.4 6.9 68 108-176 57-131 (698)
170 PF08675 RNA_bind: RNA binding 96.5 0.017 3.6E-07 42.5 7.3 55 6-69 9-63 (87)
171 PF15023 DUF4523: Protein of u 96.3 0.014 3E-07 47.2 6.6 74 2-82 82-159 (166)
172 KOG3152 TBP-binding protein, a 96.3 0.0023 5E-08 56.5 2.0 72 108-179 73-157 (278)
173 PF10309 DUF2414: Protein of u 96.2 0.018 3.9E-07 40.0 5.8 55 108-170 4-61 (62)
174 KOG3152 TBP-binding protein, a 96.2 0.0026 5.6E-08 56.2 2.0 71 6-76 74-157 (278)
175 PF08952 DUF1866: Domain of un 96.2 0.021 4.5E-07 46.7 6.9 58 22-87 52-109 (146)
176 KOG2314 Translation initiation 96.2 0.014 3E-07 57.1 6.7 65 5-70 57-127 (698)
177 PF08675 RNA_bind: RNA binding 96.0 0.031 6.6E-07 41.1 6.5 55 107-170 7-61 (87)
178 KOG4676 Splicing factor, argin 96.0 0.013 2.8E-07 54.8 5.7 78 110-187 8-88 (479)
179 KOG2202 U2 snRNP splicing fact 95.8 0.0046 1E-07 54.7 1.7 65 124-189 83-149 (260)
180 KOG0115 RNA-binding protein p5 95.7 0.01 2.2E-07 52.5 3.4 75 7-82 32-111 (275)
181 KOG1996 mRNA splicing factor [ 95.6 0.028 6.1E-07 50.7 5.9 63 123-185 300-364 (378)
182 KOG2202 U2 snRNP splicing fact 95.2 0.0069 1.5E-07 53.6 0.7 61 21-82 83-145 (260)
183 KOG4285 Mitotic phosphoprotein 94.4 0.18 3.9E-06 45.8 7.6 78 7-91 198-276 (350)
184 KOG1996 mRNA splicing factor [ 94.4 0.12 2.7E-06 46.7 6.5 63 20-82 300-364 (378)
185 KOG2416 Acinus (induces apopto 94.3 0.082 1.8E-06 52.2 5.6 79 105-189 440-523 (718)
186 PF15023 DUF4523: Protein of u 94.1 0.19 4.1E-06 40.8 6.4 75 105-186 82-160 (166)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.11 2.3E-06 44.4 5.4 83 2-84 3-97 (176)
188 KOG2135 Proteins containing th 94.1 0.039 8.5E-07 52.9 2.8 80 5-90 371-451 (526)
189 KOG2591 c-Mpl binding protein, 93.9 0.097 2.1E-06 51.3 5.3 67 6-79 175-246 (684)
190 PF07292 NID: Nmi/IFP 35 domai 93.9 0.093 2E-06 39.3 4.0 70 51-131 1-74 (88)
191 PRK11634 ATP-dependent RNA hel 93.5 0.88 1.9E-05 46.9 11.9 68 111-187 488-562 (629)
192 KOG4285 Mitotic phosphoprotein 93.5 0.3 6.4E-06 44.5 7.2 77 109-192 197-274 (350)
193 KOG2193 IGF-II mRNA-binding pr 92.7 0.08 1.7E-06 50.2 2.6 76 110-191 2-79 (584)
194 KOG2135 Proteins containing th 92.5 0.082 1.8E-06 50.8 2.4 73 110-188 373-446 (526)
195 KOG2591 c-Mpl binding protein, 92.3 0.32 7E-06 47.8 6.1 69 107-182 173-246 (684)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 91.8 0.42 9.2E-06 40.8 5.7 68 108-175 6-80 (176)
197 KOG0804 Cytoplasmic Zn-finger 91.1 0.72 1.6E-05 44.3 7.0 65 3-69 71-136 (493)
198 KOG0112 Large RNA-binding prot 90.9 0.31 6.8E-06 50.5 4.6 75 4-84 453-530 (975)
199 KOG2068 MOT2 transcription fac 89.7 0.12 2.7E-06 47.7 0.6 82 108-189 76-164 (327)
200 PF07576 BRAP2: BRCA1-associat 89.5 3.5 7.7E-05 32.2 8.5 67 108-176 12-80 (110)
201 PF04847 Calcipressin: Calcipr 88.6 1.6 3.4E-05 37.5 6.6 61 122-188 8-71 (184)
202 PF10567 Nab6_mRNP_bdg: RNA-re 88.1 13 0.00028 34.1 12.2 168 2-170 11-210 (309)
203 PF07576 BRAP2: BRCA1-associat 87.7 4.2 9.1E-05 31.8 7.9 60 8-69 15-75 (110)
204 KOG2068 MOT2 transcription fac 86.5 0.33 7.2E-06 44.9 1.3 78 6-84 77-162 (327)
205 PF04847 Calcipressin: Calcipr 86.5 2.2 4.8E-05 36.6 6.3 61 19-85 8-71 (184)
206 PF14111 DUF4283: Domain of un 86.0 0.88 1.9E-05 37.4 3.5 84 49-144 56-140 (153)
207 KOG2416 Acinus (induces apopto 84.8 0.59 1.3E-05 46.4 2.1 75 4-84 442-521 (718)
208 KOG2253 U1 snRNP complex, subu 84.8 0.46 1E-05 47.7 1.5 68 5-81 39-107 (668)
209 KOG3973 Uncharacterized conser 82.3 8.1 0.00017 36.1 8.2 8 124-131 243-250 (465)
210 PF07530 PRE_C2HC: Associated 81.9 2.2 4.8E-05 30.3 3.6 62 21-84 2-64 (68)
211 KOG4574 RNA-binding protein (c 80.5 1.2 2.7E-05 46.1 2.6 76 112-193 301-379 (1007)
212 PF11767 SET_assoc: Histone ly 79.8 13 0.00029 26.1 6.9 54 17-79 11-65 (66)
213 KOG4483 Uncharacterized conser 79.6 4.9 0.00011 38.2 6.0 66 5-77 390-456 (528)
214 PF03880 DbpA: DbpA RNA bindin 79.3 5.6 0.00012 28.6 5.1 57 17-82 12-74 (74)
215 KOG4213 RNA-binding protein La 77.5 3.1 6.7E-05 35.2 3.6 64 5-73 110-175 (205)
216 KOG2253 U1 snRNP complex, subu 76.7 1.7 3.7E-05 43.8 2.3 70 106-184 37-107 (668)
217 KOG2318 Uncharacterized conser 75.8 6.5 0.00014 39.2 5.9 39 4-42 172-215 (650)
218 smart00596 PRE_C2HC PRE_C2HC d 75.6 3.6 7.7E-05 29.2 3.0 61 21-83 2-63 (69)
219 KOG4574 RNA-binding protein (c 75.1 1.9 4.2E-05 44.7 2.2 74 7-86 299-375 (1007)
220 PF03880 DbpA: DbpA RNA bindin 69.4 23 0.00049 25.3 6.2 58 119-185 11-74 (74)
221 KOG0804 Cytoplasmic Zn-finger 66.5 18 0.00038 35.2 6.4 67 109-177 74-142 (493)
222 PF11767 SET_assoc: Histone ly 66.1 36 0.00077 24.0 6.4 53 120-181 11-64 (66)
223 PRK14548 50S ribosomal protein 65.0 28 0.00061 25.8 6.0 59 8-69 22-82 (84)
224 KOG4483 Uncharacterized conser 64.2 12 0.00025 35.8 4.6 64 108-178 390-454 (528)
225 TIGR03636 L23_arch archaeal ri 62.6 32 0.0007 25.0 5.8 58 8-68 15-74 (77)
226 KOG2891 Surface glycoprotein [ 59.5 20 0.00042 32.6 5.0 52 105-156 145-213 (445)
227 PF07530 PRE_C2HC: Associated 54.5 28 0.00062 24.6 4.3 62 124-187 2-64 (68)
228 PF15513 DUF4651: Domain of un 52.9 31 0.00068 23.9 4.1 21 20-40 8-28 (62)
229 KOG4410 5-formyltetrahydrofola 52.7 40 0.00087 30.8 5.9 49 5-58 329-377 (396)
230 PF02714 DUF221: Domain of unk 52.0 18 0.0004 33.7 4.0 57 51-132 1-57 (325)
231 PRK10590 ATP-dependent RNA hel 51.4 1.3E+02 0.0028 29.6 10.1 6 151-156 342-347 (456)
232 KOG4410 5-formyltetrahydrofola 50.3 37 0.00081 31.0 5.3 47 109-161 330-377 (396)
233 PF07292 NID: Nmi/IFP 35 domai 47.7 27 0.00059 26.1 3.5 31 154-184 1-33 (88)
234 COG5193 LHP1 La protein, small 47.1 8.6 0.00019 36.7 0.9 63 5-67 173-245 (438)
235 PF03468 XS: XS domain; Inter 46.5 21 0.00046 28.1 2.9 56 8-66 10-75 (116)
236 smart00596 PRE_C2HC PRE_C2HC d 44.1 44 0.00095 23.7 3.8 62 124-187 2-64 (69)
237 TIGR02542 B_forsyth_147 Bacter 43.0 1.7E+02 0.0036 23.1 7.2 46 117-162 82-130 (145)
238 PF03468 XS: XS domain; Inter 42.9 30 0.00065 27.3 3.3 46 121-169 29-75 (116)
239 PF10567 Nab6_mRNP_bdg: RNA-re 40.5 43 0.00093 30.8 4.2 61 106-166 12-79 (309)
240 PTZ00191 60S ribosomal protein 37.2 1E+02 0.0022 25.3 5.6 57 8-67 83-141 (145)
241 PF14026 DUF4242: Protein of u 32.9 1.9E+02 0.0041 20.9 7.4 60 8-69 2-68 (77)
242 KOG3424 40S ribosomal protein 29.8 1.5E+02 0.0032 23.5 5.0 47 17-64 34-85 (132)
243 PF00403 HMA: Heavy-metal-asso 29.4 1.7E+02 0.0038 19.4 6.6 55 8-68 1-59 (62)
244 KOG2891 Surface glycoprotein [ 28.8 54 0.0012 29.8 2.9 36 5-40 148-195 (445)
245 KOG1295 Nonsense-mediated deca 28.6 95 0.0021 29.7 4.6 68 2-69 3-73 (376)
246 PF08734 GYD: GYD domain; Int 28.3 1.7E+02 0.0036 21.8 5.1 44 20-67 22-66 (91)
247 COG5193 LHP1 La protein, small 28.1 27 0.00058 33.5 0.9 61 109-169 174-244 (438)
248 KOG4008 rRNA processing protei 28.0 43 0.00094 29.8 2.1 32 4-35 38-69 (261)
249 KOG4019 Calcineurin-mediated s 27.4 98 0.0021 26.5 4.0 74 110-189 11-91 (193)
250 PF14893 PNMA: PNMA 27.0 44 0.00095 31.6 2.1 28 2-29 14-41 (331)
251 COG5213 FIP1 Polyadenylation f 27.0 1.8E+02 0.0038 25.8 5.6 14 153-166 144-157 (266)
252 PF03439 Spt5-NGN: Early trans 26.6 94 0.002 22.8 3.5 28 47-74 43-70 (84)
253 PF02714 DUF221: Domain of unk 25.8 68 0.0015 29.8 3.2 35 154-189 1-35 (325)
254 KOG2295 C2H2 Zn-finger protein 25.0 11 0.00025 37.4 -2.2 62 6-67 231-292 (648)
255 KOG4213 RNA-binding protein La 24.2 56 0.0012 27.9 2.0 65 109-177 111-176 (205)
256 KOG4019 Calcineurin-mediated s 23.9 49 0.0011 28.2 1.6 72 7-84 11-89 (193)
257 PF05918 API5: Apoptosis inhib 23.5 27 0.00058 35.4 0.0 13 54-66 329-341 (556)
258 COG2608 CopZ Copper chaperone 23.4 2.7E+02 0.0058 19.5 5.9 46 6-57 3-48 (71)
259 CHL00123 rps6 ribosomal protei 22.4 2.9E+02 0.0062 20.9 5.5 54 14-67 14-81 (97)
260 PF10961 DUF2763: Protein of u 22.0 3.5E+02 0.0076 20.3 5.8 7 125-131 20-26 (91)
261 PRK11901 hypothetical protein; 21.9 1.7E+02 0.0036 27.5 4.8 52 17-70 253-306 (327)
262 cd04880 ACT_AAAH-PDT-like ACT 21.4 2.9E+02 0.0063 19.1 5.6 50 19-69 12-65 (75)
263 PRK11634 ATP-dependent RNA hel 21.0 2.9E+02 0.0063 28.6 6.9 7 163-169 503-509 (629)
264 CHL00030 rpl23 ribosomal prote 20.2 2.1E+02 0.0044 21.7 4.2 35 8-42 20-56 (93)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3e-36 Score=282.72 Aligned_cols=170 Identities=22% Similarity=0.419 Sum_probs=152.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++|++.++ ..+.+++|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 4567899999999999999999999999999999999999999999999999999999999998866 788999999998
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
+.+... .....+|||+|||+++|+++|+++|++||.|+.++|++++.+++++|+|||+|++.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 754221 12246899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCceeCC--eEEEEEecCCCCC
Q 038933 162 DAANNVLQT-RFHKLKY--KMVEVKRSHPKDR 190 (347)
Q Consensus 162 e~a~~Al~~-~~~~i~g--~~i~v~~a~~~~~ 190 (347)
++|++||+. ++..+.+ +.|.|.++..+..
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999996 7777765 6889998876544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.1e-31 Score=252.21 Aligned_cols=186 Identities=25% Similarity=0.397 Sum_probs=154.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
+..+|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+.++ ..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 47899999999999999999999999999999999999899999999999999999999999866 68889999998875
Q ss_pred cCCCcccc-----------------------------------C-CCC---------------------------CC---
Q 038933 84 PKGHKLEE-----------------------------------S-NGH---------------------------SG--- 97 (347)
Q Consensus 84 ~~~~~~~~-----------------------------------~-~~~---------------------------~~--- 97 (347)
+....... . ... ..
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 43311000 0 000 00
Q ss_pred ---------CC-C-----------------CC------------------------------------------------
Q 038933 98 ---------NC-V-----------------GD------------------------------------------------ 102 (347)
Q Consensus 98 ---------~~-~-----------------~~------------------------------------------------ 102 (347)
.. . ..
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 00 0 00
Q ss_pred ---------------------CCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 103 ---------------------DDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 103 ---------------------~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
........+|||+|||+++++++|+++|++||.|++++|++|+.|++++|||||+|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~ 321 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNY 321 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCH
Confidence 00011123699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 162 DAANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 162 e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
++|.+|++. ++..|+|+.|+|.+...+..
T Consensus 322 ~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 322 DEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999984 99999999999999988754
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=3.9e-31 Score=229.01 Aligned_cols=178 Identities=24% Similarity=0.429 Sum_probs=152.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
--|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.|+..++ ..|.+|.|+-.|++.+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 358999999999999999999999999999999999999999999999999999999999988 5677799999999887
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHH
Q 038933 86 GHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165 (347)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~ 165 (347)
....... ...-.........+.++|||+|++..+||++|++.|++||.|.+|+++++ +|||||.|++.|+|.
T Consensus 143 p~e~n~~--~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 143 PSEMNGK--PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAA 214 (321)
T ss_pred ccccCCC--CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHH
Confidence 6222211 11111122344567889999999999999999999999999999999988 469999999999999
Q ss_pred HHHHh-CCceeCCeEEEEEecCCCCCCC
Q 038933 166 NVLQT-RFHKLKYKMVEVKRSHPKDRID 192 (347)
Q Consensus 166 ~Al~~-~~~~i~g~~i~v~~a~~~~~~~ 192 (347)
.||.. |+.+|.|..|+|.|........
T Consensus 215 hAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99974 9999999999999987765443
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1e-30 Score=257.80 Aligned_cols=178 Identities=20% Similarity=0.399 Sum_probs=154.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
..++|||+|||+++++++|+++|++||+|.+|+|+.|+.+++++|||||+|.+.++|++|++.++ ..+.||.|.|.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46799999999999999999999999999999999999999999999999999999999999866 78999999998654
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDA 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~ 163 (347)
.......... .........++|||+|||+++++++|+++|+.||.|++++|.+++.+++++|||||+|.+.++
T Consensus 186 ~~p~a~~~~~-------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 186 NMPQAQPIID-------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred cccccccccc-------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 3221111000 001112345799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCceeCCeEEEEEecCCCC
Q 038933 164 ANNVLQT-RFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 164 a~~Al~~-~~~~i~g~~i~v~~a~~~~ 189 (347)
|.+|++. |+..|+|+.|+|.++.+..
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9999985 9999999999999998654
No 5
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.97 E-value=4.7e-30 Score=238.98 Aligned_cols=178 Identities=24% Similarity=0.361 Sum_probs=146.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
......|.+++|||+||++||.+||+.|+ |+++.+.+. +|++.|.|||||.+++++++||+++...|..|+|+|..+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 44566799999999999999999999995 667555543 799999999999999999999999998999999999999
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe-ecccccCCCCCceeEEEEEEcCh
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD-APVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
...+....-.... .........|.+++||+.||++||.+||+..-.|.. |.++.++ .+++.|.|||+|++.
T Consensus 84 ~~~e~d~~~~~~g-------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sq 155 (510)
T KOG4211|consen 84 GGAEADWVMRPGG-------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQ 155 (510)
T ss_pred CCccccccccCCC-------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCH
Confidence 7765533321111 111145678999999999999999999999876666 3344454 488999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEecCCCCCC
Q 038933 162 DAANNVLQTRFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 162 e~a~~Al~~~~~~i~g~~i~v~~a~~~~~~ 191 (347)
+.|++|+.+|...|+.|.|+|..+...+..
T Consensus 156 e~ae~Al~rhre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 156 ESAEIALGRHRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HHHHHHHHHHHHhhccceEEeehhHHHHHH
Confidence 999999999999999999999988765543
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.9e-29 Score=248.48 Aligned_cols=180 Identities=23% Similarity=0.364 Sum_probs=140.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEe-CeEeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVIL-GKEVEVK 80 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~-gr~i~v~ 80 (347)
+...++|||+|||++++|++|+++|++||.|.+++|++| .+++++|||||+|.+.++|++||+.++ ..+. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 455689999999999999999999999999999999999 599999999999999999999999976 4553 6666554
Q ss_pred ecccCCCc----------c-----------------------ccCCCC----------------------C---------
Q 038933 81 KAIPKGHK----------L-----------------------EESNGH----------------------S--------- 96 (347)
Q Consensus 81 ~a~~~~~~----------~-----------------------~~~~~~----------------------~--------- 96 (347)
.+...... . .....+ .
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 43211000 0 000000 0
Q ss_pred -------CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcC--ceeEeecccccCCCCCceeEEEEEEcChHHHHHH
Q 038933 97 -------GNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESF--GTVTDAPVICDKETGRPRGFGFITFDSEDAANNV 167 (347)
Q Consensus 97 -------~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~A 167 (347)
.............++|||+||++++|+++|+++|++| |.|++|++++ +||||+|++.++|++|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 0000001112335789999999999999999999999 9999998764 4999999999999999
Q ss_pred HH-hCCceeCCeEEEEEecCCCCCC
Q 038933 168 LQ-TRFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 168 l~-~~~~~i~g~~i~v~~a~~~~~~ 191 (347)
++ +++..|+|+.|+|.++.+....
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 98 5999999999999999886543
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.3e-29 Score=249.28 Aligned_cols=180 Identities=27% Similarity=0.481 Sum_probs=156.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||...+..+.|++|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34678999999999999999999999999999999999999999999999999999999999998888999999999987
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
.............. ........+|||+|||..+|+++|+++|++||.|..|.++.++.+++++|||||+|.+.+
T Consensus 166 ~~~~~~~~~~~~~~------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 166 QAEKNRAAKAATHQ------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred chhhhhhhhccccc------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 54332221111000 011123689999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 163 AANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 163 ~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
+|.+|++. ++..|.|+.|.|.++...
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999984 899999999999998743
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=226.59 Aligned_cols=182 Identities=25% Similarity=0.386 Sum_probs=148.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE-eCeEeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI-LGKEVEVK 80 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~-~gr~i~v~ 80 (347)
+..-+.|||+.||.++.|+||.-+|++.|+|-+++||.|+.+|.+||||||.|.++++|++|++.++ .+| .||.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3456889999999999999999999999999999999999999999999999999999999999966 445 48888877
Q ss_pred ecccCCCc----------ccc-----------------------------------------------------------
Q 038933 81 KAIPKGHK----------LEE----------------------------------------------------------- 91 (347)
Q Consensus 81 ~a~~~~~~----------~~~----------------------------------------------------------- 91 (347)
.+..+... ...
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 66433210 000
Q ss_pred --CCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH
Q 038933 92 --SNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169 (347)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~ 169 (347)
..|...............+.|||+||+.++|+|.|+++|++||.|++|+.++| ||||.|.+.++|.+|++
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 00000111111223345678999999999999999999999999999999877 99999999999999998
Q ss_pred h-CCceeCCeEEEEEecCCCCCCC
Q 038933 170 T-RFHKLKYKMVEVKRSHPKDRID 192 (347)
Q Consensus 170 ~-~~~~i~g~~i~v~~a~~~~~~~ 192 (347)
. ++.+|+|..|+|..|.|.+...
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HhcCceecCceEEEEecCChhhhc
Confidence 5 9999999999999999877554
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2e-28 Score=246.62 Aligned_cols=184 Identities=26% Similarity=0.460 Sum_probs=154.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEe----CeEeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVIL----GKEVEV 79 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~----gr~i~v 79 (347)
..++|||+|||+++|+++|+++|++||.|.++.++++. +++++|||||+|.+.++|.+|++.++ ..+. |+.|.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 45789999999999999999999999999999999987 79999999999999999999999866 6777 999999
Q ss_pred eecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEc
Q 038933 80 KKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFD 159 (347)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~ 159 (347)
.++..+.........................+|||+||++++|+++|+++|++||.|++++++.+ .+++++|+|||+|.
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 98866544322111110000011112345678999999999999999999999999999999999 67999999999999
Q ss_pred ChHHHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 160 SEDAANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 160 ~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
+.++|++|+.. ++..++|+.|.|.++..+..
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 99999999985 89999999999999988763
No 10
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=223.54 Aligned_cols=182 Identities=47% Similarity=0.809 Sum_probs=168.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeee
Q 038933 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVK 80 (347)
Q Consensus 1 ~e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~ 80 (347)
+++.+.++|||++|+|+++++.|+++|.+||+|.++.+++|+.+++++||+||+|++++.+.++|....+.|.|+.|+++
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPK 80 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccce
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcC
Q 038933 81 KAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDS 160 (347)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~ 160 (347)
.+.++......... ....+|||++||.++++++++++|++||.|..+.++.|+.+.+++||+||+|.+
T Consensus 81 ~av~r~~~~~~~~~------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 81 RAVSREDQTKVGRH------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDS 148 (311)
T ss_pred eccCcccccccccc------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecc
Confidence 99887655544221 257899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCceeCCeEEEEEecCCCCCCCCC
Q 038933 161 EDAANNVLQTRFHKLKYKMVEVKRSHPKDRIDKF 194 (347)
Q Consensus 161 ~e~a~~Al~~~~~~i~g~~i~v~~a~~~~~~~~~ 194 (347)
++++++++.++.+.|+++.|+|+.|.+++.....
T Consensus 149 e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 149 EDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ccccceecccceeeecCceeeEeeccchhhcccc
Confidence 9999999999999999999999999999977654
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=8.7e-28 Score=242.03 Aligned_cols=163 Identities=26% Similarity=0.440 Sum_probs=145.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccCC
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPKG 86 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~~ 86 (347)
+|||+|||+++||++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|++.++ ..+.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999899999999999999999999999877 56999999999975322
Q ss_pred CccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHH
Q 038933 87 HKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANN 166 (347)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~ 166 (347)
... .....+|||+|||.++++++|+++|++||.|..|++..+. +++++|||||+|.+.++|++
T Consensus 82 ~~~----------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SLR----------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred ccc----------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHH
Confidence 111 1124579999999999999999999999999999999885 58899999999999999999
Q ss_pred HHHh-CCceeCCeEEEEEecCC
Q 038933 167 VLQT-RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 167 Al~~-~~~~i~g~~i~v~~a~~ 187 (347)
|+++ ++..+.++.|.|.....
T Consensus 145 Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 145 AIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred HHHHhcccEecCceEEEecccc
Confidence 9986 88999999999876544
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.2e-27 Score=217.42 Aligned_cols=172 Identities=30% Similarity=0.512 Sum_probs=150.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC--ceEeC--eEee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH--HVILG--KEVE 78 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~--~~~~g--r~i~ 78 (347)
+.+.-++||+.||..++|.||+++|++||.|.+|.|++||.|+.++|||||.|.+.++|.+|+..++ ..+.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4567789999999999999999999999999999999999999999999999999999999999865 45655 6788
Q ss_pred eeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEE
Q 038933 79 VKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITF 158 (347)
Q Consensus 79 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F 158 (347)
|+++....++. ...++|||+-|+..+||.+|+++|++||.|++|.|++|.+ +.+||+|||+|
T Consensus 111 vk~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~f 172 (510)
T KOG0144|consen 111 VKYADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKF 172 (510)
T ss_pred ecccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEE
Confidence 88886544333 2367999999999999999999999999999999999976 99999999999
Q ss_pred cChHHHHHHHHh-CC-ceeCC--eEEEEEecCCCCCCC
Q 038933 159 DSEDAANNVLQT-RF-HKLKY--KMVEVKRSHPKDRID 192 (347)
Q Consensus 159 ~~~e~a~~Al~~-~~-~~i~g--~~i~v~~a~~~~~~~ 192 (347)
.+.|.|..||+. |+ .++.| ..|.|++|.++..+.
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 999999999985 54 55665 478999998876554
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1e-25 Score=224.56 Aligned_cols=179 Identities=21% Similarity=0.350 Sum_probs=141.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC------------CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCce
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY------------GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHV 71 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~------------G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~ 71 (347)
...|+|||+|||+++|+++|+++|.++ +.|..+.+. +.+|||||+|.+.++|++||+.++..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 457899999999999999999999975 234444443 34589999999999999999766678
Q ss_pred EeCeEeeeeecccCCCccccC----CCCCC----C---CCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeec
Q 038933 72 ILGKEVEVKKAIPKGHKLEES----NGHSG----N---CVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAP 140 (347)
Q Consensus 72 ~~gr~i~v~~a~~~~~~~~~~----~~~~~----~---~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~ 140 (347)
|.|+.|.|.+........... ..... . ...........++|||+|||+.+|+++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 999999998654432111000 00000 0 001111234567999999999999999999999999999999
Q ss_pred ccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 141 VICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 141 i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
++++..+++++|||||+|.+.++|++|++. ++..|.|+.|.|.++...
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999999999999999999999999985 999999999999998654
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8e-26 Score=212.44 Aligned_cols=185 Identities=28% Similarity=0.430 Sum_probs=151.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
.-+|.|+||||.|.+.+|+.+|++||.|.+|.|.+.+..+.+ |||||+|....+|++||+.++ ..|.||+|-|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 457999999999999999999999999999999988755555 999999999999999999977 799999999999976
Q ss_pred CCCccccC-------------------CC---C-----------CCCC---------------------------CC---
Q 038933 85 KGHKLEES-------------------NG---H-----------SGNC---------------------------VG--- 101 (347)
Q Consensus 85 ~~~~~~~~-------------------~~---~-----------~~~~---------------------------~~--- 101 (347)
+....... .. . .... ..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 55322200 00 0 0000 00
Q ss_pred ---------CCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhC-
Q 038933 102 ---------DDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTR- 171 (347)
Q Consensus 102 ---------~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~- 171 (347)
......-..+|||+|||+++|+++|.++|++||+|.++.|+.++.|+.++|.|||.|.+..+|.+||++-
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0011122378999999999999999999999999999999999999999999999999999999999862
Q ss_pred -----C-ceeCCeEEEEEecCCCCCC
Q 038933 172 -----F-HKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 172 -----~-~~i~g~~i~v~~a~~~~~~ 191 (347)
+ ..|+||.|.|..+..+...
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHHH
Confidence 3 6789999999999877643
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=3.8e-25 Score=218.26 Aligned_cols=169 Identities=13% Similarity=0.169 Sum_probs=138.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc---CceEeCeEeeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK---HHVILGKEVEVKK 81 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~---~~~~~gr~i~v~~ 81 (347)
++++|||+|||+++|+++|+++|++||.|.+|.+++++ +||||+|.+.++|++|++.+ ...+.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 47899999999999999999999999999999999754 79999999999999999863 3689999999999
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
+..+........ . ..........+|+|.||++++|+++|+++|++||.|.+|.|++++. +++|||+|.+.
T Consensus 75 s~~~~~~~~~~~---~---~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~ 144 (481)
T TIGR01649 75 STSQEIKRDGNS---D---FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESV 144 (481)
T ss_pred cCCcccccCCCC---c---ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCH
Confidence 976542221100 0 0011123456899999999999999999999999999999987642 46899999999
Q ss_pred HHHHHHHH-hCCceeCC--eEEEEEecCCCC
Q 038933 162 DAANNVLQ-TRFHKLKY--KMVEVKRSHPKD 189 (347)
Q Consensus 162 e~a~~Al~-~~~~~i~g--~~i~v~~a~~~~ 189 (347)
++|.+|++ +++..|.+ +.|+|.++.+..
T Consensus 145 ~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99999998 48888854 588898887644
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=209.50 Aligned_cols=187 Identities=24% Similarity=0.421 Sum_probs=157.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+..||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+|++.|++... ..+.||.|.|..+
T Consensus 3 ~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 3 KSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred CCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 345899999999999999999999999999999999999999999999999999999999999965 6899999999998
Q ss_pred ccCCCccccCCC---CCCCCCCC-----CCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEE
Q 038933 83 IPKGHKLEESNG---HSGNCVGD-----DDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFG 154 (347)
Q Consensus 83 ~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~a 154 (347)
..+......... ........ .....+..+|.|+||||.|.+.+|+.+|+.||.|..|.|++..+ ++..|||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFa 161 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFA 161 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceE
Confidence 766544311111 00000000 11123367899999999999999999999999999999998776 5556999
Q ss_pred EEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCCCCC
Q 038933 155 FITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 155 fV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~~ 191 (347)
||+|.+..+|.+|++. |++.|+||.|-|.||.+++..
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred EEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 9999999999999996 999999999999999998754
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.3e-25 Score=189.46 Aligned_cols=168 Identities=27% Similarity=0.495 Sum_probs=150.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
+...+|.|--||..+|+|||+.+|...|+|++|++++|+-+|.+.||+||.|-+++||++|+..++ -.+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 455679999999999999999999999999999999999999999999999999999999999977 5788999999999
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
.+.... .....|||++||...|..+|+++|++||.|..-+|+.|..|+.++|.+||.|+..+
T Consensus 119 RPSs~~------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 119 RPSSDS------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred cCChhh------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 654322 34568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceeCC--eEEEEEecCCCC
Q 038933 163 AANNVLQT-RFHKLKY--KMVEVKRSHPKD 189 (347)
Q Consensus 163 ~a~~Al~~-~~~~i~g--~~i~v~~a~~~~ 189 (347)
+|+.||+. ++..--| ..|.|+++....
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999985 6655444 478999987654
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=183.72 Aligned_cols=172 Identities=28% Similarity=0.454 Sum_probs=153.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
-....||||+||+..++++.|.++|-+.|+|.++++.+|+-+...+||||+||.++++|+-|++-++ .++-||+|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999988 678999999999
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe-ecccccCCCCCceeEEEEEEcC
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD-APVICDKETGRPRGFGFITFDS 160 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~F~~ 160 (347)
+....... ....+|||+||.+.+++..|.+.|+.||.+.. -+|+++..|+.++|++||-|++
T Consensus 86 as~~~~nl-----------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 86 ASAHQKNL-----------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred cccccccc-----------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 86221111 22478999999999999999999999998865 5899999999999999999999
Q ss_pred hHHHHHHHHh-CCceeCCeEEEEEecCCCCCC
Q 038933 161 EDAANNVLQT-RFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 161 ~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~~ 191 (347)
.+.+.+|+.. ++..+..+.|.|+++..+...
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999986 889999999999999876653
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=2.6e-24 Score=214.48 Aligned_cols=184 Identities=14% Similarity=0.209 Sum_probs=147.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
..++|||+|||+.+|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.++ ..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999999899999999999999999999999866 78999999999986
Q ss_pred cCCCccccCCCC----------CCCCCCCCCCCCCcceEEEcCCCCC----------CCHHHHHHhhhcCceeEeecccc
Q 038933 84 PKGHKLEESNGH----------SGNCVGDDDTEINTKKIFVGGLPLD----------IKEEEFKSYFESFGTVTDAPVIC 143 (347)
Q Consensus 84 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~V~nLp~~----------~t~e~L~~~F~~~G~v~~v~i~~ 143 (347)
............ ............++.+|+|.|+... ...++|+++|++||.|+.|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543222111100 0000000112345788999999642 12368999999999999999987
Q ss_pred c---CCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 144 D---KETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 144 ~---~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
+ ..++...|+|||+|++.++|++|+.. ++.+|+|+.|.|.+....
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 5 23456789999999999999999985 999999999999987653
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=2.8e-24 Score=212.08 Aligned_cols=177 Identities=19% Similarity=0.320 Sum_probs=140.5
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 5 SLRKLFVGGVSR-ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 5 ~~r~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
..++|||+|||+ .+|+++|+++|+.||.|.+|++++++ +|+|||+|.+.++|++|++.++ ..|.|++|.|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 567999999998 69999999999999999999999874 4899999999999999999866 7899999999988
Q ss_pred ccCCCccccCCC------------C-CCCCC------CCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCce--eEeecc
Q 038933 83 IPKGHKLEESNG------------H-SGNCV------GDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGT--VTDAPV 141 (347)
Q Consensus 83 ~~~~~~~~~~~~------------~-~~~~~------~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~--v~~v~i 141 (347)
............ . ..... .......++.+|||.|||+.+|+++|+++|+.||. |+.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 554321110000 0 00000 00011245789999999999999999999999997 888888
Q ss_pred cccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeE------EEEEecCCC
Q 038933 142 ICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKM------VEVKRSHPK 188 (347)
Q Consensus 142 ~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~------i~v~~a~~~ 188 (347)
...+. ..+++|||+|++.++|.+|+.. ++..|.++. |+|.++.++
T Consensus 429 ~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 65442 3578999999999999999985 999999985 899888764
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=4.6e-22 Score=195.75 Aligned_cols=180 Identities=23% Similarity=0.339 Sum_probs=142.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
.++|||+|||.++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.++ ..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5899999999999999999999999999999999999899999999999999999999999866 789999999999643
Q ss_pred CCCccccC-----------------------------CCC-------CCC------------------------------
Q 038933 85 KGHKLEES-----------------------------NGH-------SGN------------------------------ 98 (347)
Q Consensus 85 ~~~~~~~~-----------------------------~~~-------~~~------------------------------ 98 (347)
........ ... ...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21110000 000 000
Q ss_pred ------CCCCCCCCCCcceEEEcCCCCCCC----------HHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 99 ------CVGDDDTEINTKKIFVGGLPLDIK----------EEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 99 ------~~~~~~~~~~~~~l~V~nLp~~~t----------~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
............+|+|.||....+ .+||++.|++||.|+.|.|.. ....|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHH
Confidence 000000224567899999965544 368999999999999998863 345799999999999
Q ss_pred HHHHHHHh-CCceeCCeEEEEEecCCCC
Q 038933 163 AANNVLQT-RFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 163 ~a~~Al~~-~~~~i~g~~i~v~~a~~~~ 189 (347)
+|.+|++. ++..|+|+.|.+.+.....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99999985 9999999999999876543
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=5.6e-23 Score=180.12 Aligned_cols=150 Identities=29% Similarity=0.543 Sum_probs=136.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
-+|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||..+++..++.|+..++ -+|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999985 99999999999999999766 5899999999998654
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHH
Q 038933 86 GHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165 (347)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~ 165 (347)
. ..+.+|+|+||.+.++.++|+..|++||+|.+++|++| |+||.|+-.++|.
T Consensus 75 s--------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~ 126 (346)
T KOG0109|consen 75 S--------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAV 126 (346)
T ss_pred C--------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchH
Confidence 1 34678999999999999999999999999999999977 9999999999999
Q ss_pred HHHHh-CCceeCCeEEEEEecCCCCCCC
Q 038933 166 NVLQT-RFHKLKYKMVEVKRSHPKDRID 192 (347)
Q Consensus 166 ~Al~~-~~~~i~g~~i~v~~a~~~~~~~ 192 (347)
.|++. ++.+++|+.++|..++.+-...
T Consensus 127 ~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred HHHhcccccccccceeeeeeeccccccC
Confidence 99974 8999999999999988765443
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3e-23 Score=186.66 Aligned_cols=177 Identities=20% Similarity=0.400 Sum_probs=152.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
.++|||+.|.++..|+.|+..|..||+|++|.+..|+.|++.||||||||+-+|.|+.|++.+| ..+.||.|.|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999988 577889999986543
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHH
Q 038933 85 KGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAA 164 (347)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a 164 (347)
-.....-.. ....+...-.+|||..+.++.+++||+..|+.||+|.+|.+-+++..+..+||+|++|.+.++.
T Consensus 193 mpQAQpiID-------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 193 MPQAQPIID-------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CcccchHHH-------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 321111000 0011224467999999999999999999999999999999999999899999999999999999
Q ss_pred HHHHH-hCCceeCCeEEEEEecCCCC
Q 038933 165 NNVLQ-TRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 165 ~~Al~-~~~~~i~g~~i~v~~a~~~~ 189 (347)
..|+. +|-..++|.+++|.++....
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred HHHhhhcchhhcccceEecccccCCC
Confidence 99998 58899999999998886544
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=6.5e-22 Score=170.88 Aligned_cols=184 Identities=28% Similarity=0.384 Sum_probs=150.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc-eEeC--eEeeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH-VILG--KEVEVKK 81 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-~~~g--r~i~v~~ 81 (347)
...+|||.+||..+|..||+++|++||.|...+|+.|.-||.+||.+||.|...++|+.|++.++. +-.| .+|.|++
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 356899999999999999999999999999999999998999999999999999999999999773 3333 5889988
Q ss_pred cccCCCcccc----------CCC------C--------------------CCC---------CCCCCCCCCCcceEEEcC
Q 038933 82 AIPKGHKLEE----------SNG------H--------------------SGN---------CVGDDDTEINTKKIFVGG 116 (347)
Q Consensus 82 a~~~~~~~~~----------~~~------~--------------------~~~---------~~~~~~~~~~~~~l~V~n 116 (347)
+......... .+. + +.. ....+.......+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 8543321111 000 0 000 000112234568899999
Q ss_pred CCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 117 LPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 117 Lp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
|.++++|.-|-++|.+||.|.+|+|++|..|.+.|||+||.+.+-++|..|+.. ++..+++|.+.|++-..+
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999985 999999999999987654
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-21 Score=184.96 Aligned_cols=154 Identities=26% Similarity=0.430 Sum_probs=140.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
..|||+ +++||..|.++|+.+|+|.+|++.+|. | +.|||||.|.++++|++||+.++ ..+.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 899999999999999999999999998 6 99999999999999999999988 6789999999998532
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHH
Q 038933 86 GHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165 (347)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~ 165 (347)
. ..|||.||+++++..+|.++|+.||.|.+|++.++.. | ++|| ||+|+++++|+
T Consensus 76 ~-----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~ 129 (369)
T KOG0123|consen 76 P-----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAK 129 (369)
T ss_pred C-----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHH
Confidence 1 1299999999999999999999999999999999975 4 9999 99999999999
Q ss_pred HHHHh-CCceeCCeEEEEEecCCCCCCC
Q 038933 166 NVLQT-RFHKLKYKMVEVKRSHPKDRID 192 (347)
Q Consensus 166 ~Al~~-~~~~i~g~~i~v~~a~~~~~~~ 192 (347)
+|+++ ++..+.++.|.|.....+..+.
T Consensus 130 ~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 130 KAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred HHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 99996 9999999999999888776654
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.1e-22 Score=171.65 Aligned_cols=142 Identities=30% Similarity=0.506 Sum_probs=123.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeee
Q 038933 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVK 80 (347)
Q Consensus 1 ~e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~ 80 (347)
++..+.|||||+||..++||+-|..+|++.|.|+.++|+.+ .|.|.
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~ 46 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVN 46 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccc
Confidence 46788999999999999999999999999999999999986 34555
Q ss_pred ecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcC
Q 038933 81 KAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDS 160 (347)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~ 160 (347)
|+.....+.. +.......|||+.|...++-|+|++.|.+||+|.+++|++|..|+|+|||+||.|-.
T Consensus 47 wa~~p~nQsk-------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 47 WATAPGNQSK-------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cccCcccCCC-------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 5544321111 112336789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH-hCCceeCCeEEEEEecCCCC
Q 038933 161 EDAANNVLQ-TRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 161 ~e~a~~Al~-~~~~~i~g~~i~v~~a~~~~ 189 (347)
.++|+.||. |++.+|+.|.|+..||+.|.
T Consensus 114 k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred hHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 999999998 59999999999999999876
No 27
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=6.4e-20 Score=171.55 Aligned_cols=179 Identities=19% Similarity=0.240 Sum_probs=136.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEE-EEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEE-TLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
....|.+++||++||++||.+||+-.-.|.. |.++.++ .+++.|.|||+|++.+.|++||..+...|..|+|+|.++.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 3467999999999999999999998876665 5566666 7889999999999999999999999999999999998874
Q ss_pred cCCCccccC------------------CC----------------------------------C--C------------C
Q 038933 84 PKGHKLEES------------------NG----------------------------------H--S------------G 97 (347)
Q Consensus 84 ~~~~~~~~~------------------~~----------------------------------~--~------------~ 97 (347)
..+...... +. . . .
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 332211110 00 0 0 0
Q ss_pred CC-C--------CCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHH
Q 038933 98 NC-V--------GDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168 (347)
Q Consensus 98 ~~-~--------~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al 168 (347)
.. . ....-......++.++||+..++.+|..+|+..-.+ .|.|-.. .+++..|.|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 00 0 000001222679999999999999999999987544 4444444 34999999999999999999999
Q ss_pred HhCCceeCCeEEEEEecC
Q 038933 169 QTRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 169 ~~~~~~i~g~~i~v~~a~ 186 (347)
.+++..+.++.|++....
T Consensus 339 skd~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLNG 356 (510)
T ss_pred ccCCcccCcceeeecccC
Confidence 999999999999987653
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=3.1e-22 Score=189.22 Aligned_cols=185 Identities=25% Similarity=0.432 Sum_probs=158.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
|+.+.|+||+--|+..+++.+|.+||+.+|+|..|+++.|+.++++||.|||+|.+.+.+..|+...+..+.|.+|.|+.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 56788999999999999999999999999999999999999999999999999999999999999888999999999998
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
+...+....... ..........+...|||+||.+++++++|+..|+.||.|..|.+.+|..||+++||+||+|.+.
T Consensus 255 sEaeknr~a~~s----~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 255 SEAEKNRAANAS----PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred cHHHHHHHHhcc----ccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 865544422111 1111111223444599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 162 DAANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 162 e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
++|.+|+++ |+.+|-|+.|+|.....+..
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 999999875 88999999999887765543
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=2.8e-20 Score=180.49 Aligned_cols=174 Identities=26% Similarity=0.397 Sum_probs=146.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCC---CCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLT---GHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t---g~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
+|||.||++++|.++|+.+|...|.|.++.|...+.. -.++|||||+|.++++|++|++.++ +.+.|..|.|+.+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988876522 1356999999999999999999988 89999999999986
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDA 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~ 163 (347)
.+...... .........++|+|.|||+.++..+|+++|..||.+.+|+|++....+.++|||||+|-++.+
T Consensus 597 ~k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 597 NKPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred Cccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 22211111 111222337899999999999999999999999999999999886667789999999999999
Q ss_pred HHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 164 ANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 164 a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
|.+|+.. ....+-||.+.+.|+.....
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHhhcccceechhhheehhccchH
Confidence 9999986 67889999999999987653
No 30
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=6.3e-19 Score=145.79 Aligned_cols=85 Identities=34% Similarity=0.665 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
....++|||+|||+++|+++|+++|++||.|++++|+.|+.+++++|||||+|++.++|++|++ +++..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4557799999999999999999999999999999999999999999999999999999999998 489999999999999
Q ss_pred cCCCCC
Q 038933 185 SHPKDR 190 (347)
Q Consensus 185 a~~~~~ 190 (347)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=5.4e-20 Score=169.10 Aligned_cols=183 Identities=28% Similarity=0.466 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC--ceEeC--eEeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH--HVILG--KEVEVK 80 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~--~~~~g--r~i~v~ 80 (347)
+.++|||+-|+..+||.||+++|++||.|++|.|+++. .+.+||||||.|.+.+.|..|++.++ ..|.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999998 89999999999999999999999987 46776 589999
Q ss_pred ecccCCCcccc---------------------------------------------------------------------
Q 038933 81 KAIPKGHKLEE--------------------------------------------------------------------- 91 (347)
Q Consensus 81 ~a~~~~~~~~~--------------------------------------------------------------------- 91 (347)
++.+++.+...
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 99777643221
Q ss_pred ------------CCC------CC----------------C----------------------------------------
Q 038933 92 ------------SNG------HS----------------G---------------------------------------- 97 (347)
Q Consensus 92 ------------~~~------~~----------------~---------------------------------------- 97 (347)
... .+ .
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 000 00 0
Q ss_pred ---------------------------------------------------CCCCCCCCCCCcceEEEcCCCCCCCHHHH
Q 038933 98 ---------------------------------------------------NCVGDDDTEINTKKIFVGGLPLDIKEEEF 126 (347)
Q Consensus 98 ---------------------------------------------------~~~~~~~~~~~~~~l~V~nLp~~~t~e~L 126 (347)
.......+......+||.+||.+.-+.+|
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 00000122234566999999999999999
Q ss_pred HHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 127 KSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 127 ~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
-..|..||.|...++..|+.|+-++.|+||.|++..+|..||.. ++..|+.+.++|.....+
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999999999999999999999999999999984 999999999998876554
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.1e-19 Score=169.90 Aligned_cols=172 Identities=23% Similarity=0.428 Sum_probs=150.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+...|||+||+.+++..+|.++|+.||+|.+|++..+. .| +||| ||+|+++++|++|++.++ ..+.+++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 344559999999999999999999999999999999998 56 9999 999999999999999976 6778999999988
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
..+..+...... .......++|.+++.+++++.|.++|+.+|.|..+.++.+.. +++++|+||.|++.+
T Consensus 151 ~~~~er~~~~~~----------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e 219 (369)
T KOG0123|consen 151 ERKEEREAPLGE----------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPE 219 (369)
T ss_pred cchhhhcccccc----------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChh
Confidence 776665544221 223467899999999999999999999999999999998865 779999999999999
Q ss_pred HHHHHHHh-CCceeCCeEEEEEecCCCC
Q 038933 163 AANNVLQT-RFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 163 ~a~~Al~~-~~~~i~g~~i~v~~a~~~~ 189 (347)
+|..|++. ++..+++..+.|..+..+.
T Consensus 220 ~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 220 DAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred HHHHHHHhccCCcCCccceeecccccch
Confidence 99999985 8888999999998887743
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.7e-19 Score=155.31 Aligned_cols=186 Identities=27% Similarity=0.489 Sum_probs=153.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC--ceEeC--eEeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH--HVILG--KEVEVK 80 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~--~~~~g--r~i~v~ 80 (347)
+.|+|||+-|...-.|||++.+|..||.|++|.+.+.+ .|.+||+|||.|.+..+|+.|+..++ ..+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999988 89999999999999999999999876 35655 467777
Q ss_pred ecccCCCcccc---------------------------------------------------------------------
Q 038933 81 KAIPKGHKLEE--------------------------------------------------------------------- 91 (347)
Q Consensus 81 ~a~~~~~~~~~--------------------------------------------------------------------- 91 (347)
++...+++...
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 77554432110
Q ss_pred ------CCCC-------------------C---------------------C--------CC------------------
Q 038933 92 ------SNGH-------------------S---------------------G--------NC------------------ 99 (347)
Q Consensus 92 ------~~~~-------------------~---------------------~--------~~------------------ 99 (347)
...+ + . ..
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000 0 0 00
Q ss_pred -------------------CCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcC
Q 038933 100 -------------------VGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDS 160 (347)
Q Consensus 100 -------------------~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~ 160 (347)
.....+....+.|||-.||....+.+|.+.|-.||-|.+.+++.|+.|+.+|.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0001223567889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH-hCCceeCCeEEEEEecCCCCCC
Q 038933 161 EDAANNVLQ-TRFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 161 ~e~a~~Al~-~~~~~i~g~~i~v~~a~~~~~~ 191 (347)
..++++||. +|+..|+=+.++|...++++..
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 999999998 5999999999999988877653
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.6e-17 Score=135.85 Aligned_cols=159 Identities=19% Similarity=0.291 Sum_probs=125.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
.-...++|||+|||.++-+.||+++|.+||.|..|.+...+ .+-.||||+|+++.+|+.|+...+ -.+.|..|.|+
T Consensus 2 ~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 2 SGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred CCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 45678999999999999999999999999999999887643 234699999999999999999855 67999999999
Q ss_pred ecccCCCccccCCC-C---CC----CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCcee
Q 038933 81 KAIPKGHKLEESNG-H---SG----NCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRG 152 (347)
Q Consensus 81 ~a~~~~~~~~~~~~-~---~~----~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G 152 (347)
.+..........-. . .. ...-..+......+|.|.+||++.+|+||+++..+-|.|....+.+| |
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g 151 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------G 151 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------c
Confidence 98654321111000 0 00 00001233345678999999999999999999999999999998877 3
Q ss_pred EEEEEEcChHHHHHHHHh
Q 038933 153 FGFITFDSEDAANNVLQT 170 (347)
Q Consensus 153 ~afV~F~~~e~a~~Al~~ 170 (347)
++.|+|...|+.+-|+.+
T Consensus 152 ~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred ceeeeeeehhhHHHHHHh
Confidence 789999999999999976
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=2.7e-17 Score=162.95 Aligned_cols=80 Identities=16% Similarity=0.441 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
..++|||+|||+++++++|+++|++||.|.+++|.+++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34799999999999999999999999999999999999899999999999999999999999977 68999999999876
Q ss_pred c
Q 038933 84 P 84 (347)
Q Consensus 84 ~ 84 (347)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 5
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=2.6e-17 Score=136.19 Aligned_cols=82 Identities=34% Similarity=0.613 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 346789999999999999999999999999999999999999999999999999999999999865 7899999999998
Q ss_pred ccC
Q 038933 83 IPK 85 (347)
Q Consensus 83 ~~~ 85 (347)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 654
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.69 E-value=6.1e-16 Score=142.69 Aligned_cols=177 Identities=22% Similarity=0.310 Sum_probs=138.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhc-cCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 6 LRKLFVGGVSRETNEETLREYFS-QYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
.|.+||.|||+++..++|+++|. +.|+|+.|.++.|. +|+++|+|.|||+++|.++||++.++ ..+.||+|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 46799999999999999999996 68999999999998 99999999999999999999999987 78999999998664
Q ss_pred cCCCcccc-----------------------------------------CCCCCC----CCCC-----------------
Q 038933 84 PKGHKLEE-----------------------------------------SNGHSG----NCVG----------------- 101 (347)
Q Consensus 84 ~~~~~~~~-----------------------------------------~~~~~~----~~~~----------------- 101 (347)
..+..+.. ....+. ....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 42211100 000000 0000
Q ss_pred -----CCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCcee
Q 038933 102 -----DDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKL 175 (347)
Q Consensus 102 -----~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i 175 (347)
.-..++-..++||.||.+.+....|++.|.-.|.|+.|.+-.|+. +.++|+|.++|..+-.|-.||.+ +..-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 001233456799999999999999999999999999999998987 79999999999999999999987 43334
Q ss_pred CCeEEEEEe
Q 038933 176 KYKMVEVKR 184 (347)
Q Consensus 176 ~g~~i~v~~ 184 (347)
..+...+..
T Consensus 282 ~~~~~~~Rl 290 (608)
T KOG4212|consen 282 FDRRMTVRL 290 (608)
T ss_pred ccccceeec
Confidence 444444443
No 38
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.67 E-value=6.2e-17 Score=146.99 Aligned_cols=183 Identities=19% Similarity=0.242 Sum_probs=141.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccC----CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQY----GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~----G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
.--|.+++||+++++.|+.+||..- +.++.|.+++.+ +|+..|-|||.|..+++|+.||.++...|.-|+|++.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4568899999999999999999732 355677777766 89999999999999999999999988888889999998
Q ss_pred cccCCCccccCCCCCC---C----------CCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCce-eEe--ecccccC
Q 038933 82 AIPKGHKLEESNGHSG---N----------CVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGT-VTD--APVICDK 145 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~--v~i~~~~ 145 (347)
++..+......+..+. . .....+......+|.+++||+.++.|||.+||..|-. |.. |.++.+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 8765544332211100 0 0011122334678999999999999999999998863 333 6666664
Q ss_pred CCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 146 ETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 146 ~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
.|++.|.|||+|.+.|+|.+|..+ +++....|+|+|..+...+.
T Consensus 320 -qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 320 -QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred -CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 499999999999999999999887 65666799999998876553
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.67 E-value=2.1e-15 Score=129.03 Aligned_cols=174 Identities=20% Similarity=0.359 Sum_probs=132.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHH----HhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEee
Q 038933 4 VSLRKLFVGGVSRETNEETLRE----YFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVE 78 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~ 78 (347)
....||||.||+.-+..++|+. +|++||.|.+|.... +.+.+|.|||.|.+.+.|-.|+..++ -.+.|+++.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999999 999999998887776 56788999999999999999999977 568899999
Q ss_pred eeecccCCCccccCCC------------------CCCCCCC--------------CCCCCCCcceEEEcCCCCCCCHHHH
Q 038933 79 VKKAIPKGHKLEESNG------------------HSGNCVG--------------DDDTEINTKKIFVGGLPLDIKEEEF 126 (347)
Q Consensus 79 v~~a~~~~~~~~~~~~------------------~~~~~~~--------------~~~~~~~~~~l~V~nLp~~~t~e~L 126 (347)
|++|..+......... ....... ......+...+++.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9998665432221000 0000000 0233566788999999999999999
Q ss_pred HHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeC-CeEEEEEec
Q 038933 127 KSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLK-YKMVEVKRS 185 (347)
Q Consensus 127 ~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~-g~~i~v~~a 185 (347)
..+|.+|.-.+.|+++... .+.|||+|.+...|..|... .+..|- ...+.|.++
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 9999999888888887543 46999999998888888764 444433 555555544
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.67 E-value=4.2e-16 Score=147.96 Aligned_cols=177 Identities=23% Similarity=0.350 Sum_probs=133.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
+.|||+||..++|+++|+..|+.||.|+.|.++.|..||++|||+||+|.+.++|++|+..+| -++.||.|.|...+.+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 449999999999999999999999999999999998899999999999999999999999877 5788999988654333
Q ss_pred CCccccC-----------CC----C--------------------------------------CC-CCCCCCCCC-----
Q 038933 86 GHKLEES-----------NG----H--------------------------------------SG-NCVGDDDTE----- 106 (347)
Q Consensus 86 ~~~~~~~-----------~~----~--------------------------------------~~-~~~~~~~~~----- 106 (347)
....... .. . .. .......+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 2221100 00 0 00 000001111
Q ss_pred --CCcceEEEcCCCCCCCH----------HHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCc
Q 038933 107 --INTKKIFVGGLPLDIKE----------EEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFH 173 (347)
Q Consensus 107 --~~~~~l~V~nLp~~~t~----------e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~ 173 (347)
.++.++.+.|+-...|+ |||.+.+.+||.|..|.+-+. +-|+.||.|.+.++|..|+.. |+.
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 45566677776333222 678888999999988877533 348999999999999999986 999
Q ss_pred eeCCeEEEEEecCCC
Q 038933 174 KLKYKMVEVKRSHPK 188 (347)
Q Consensus 174 ~i~g~~i~v~~a~~~ 188 (347)
+|.|+.|...+-...
T Consensus 514 WF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 514 WFAGRMITAKYLPLE 528 (549)
T ss_pred hhccceeEEEEeehh
Confidence 999999998876543
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=1.7e-15 Score=149.93 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=96.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccC--CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQY--GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.++|||+|||+++|+++|+++|++| |.|++|++++ +||||+|.+.++|++|++.++ ..|.|+.|.|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998764 499999999999999999866 7899999999999
Q ss_pred ccCCCccccC----------CCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCce
Q 038933 83 IPKGHKLEES----------NGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGT 135 (347)
Q Consensus 83 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~ 135 (347)
.+........ ........-.......+.+++++|++++++++.+.++|..+|.
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~ 367 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGP 367 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcc
Confidence 7754331110 0001111112233456789999999999999999999988874
No 42
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.9e-16 Score=135.78 Aligned_cols=81 Identities=36% Similarity=0.676 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
....+|||++|+|+++.++|+++|++||+|.+..|+.|+.|+++|||+||+|.|.++|++|++.-+..|+||+..|..+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 038933 84 P 84 (347)
Q Consensus 84 ~ 84 (347)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.1e-15 Score=132.10 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=128.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
..|||++||+.+.+.+|+.||..||.+..+.|.. ||+||+|.+.-+|..|+..++ ..|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999887765 589999999999999999876 6777877888888754
Q ss_pred CCccccCC-CCCCC-CCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHH
Q 038933 86 GHKLEESN-GHSGN-CVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDA 163 (347)
Q Consensus 86 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~ 163 (347)
........ ..... .............+.|.+++..+.+.+|.+.|.++|.+....+. .+++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhh
Confidence 32221100 00000 11122334567789999999999999999999999999655442 4489999999999
Q ss_pred HHHHHHh-CCceeCCeEEEEEec
Q 038933 164 ANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 164 a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
|.+|+.. ++..+.++.|.+...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 9999996 889999999999443
No 44
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=129.99 Aligned_cols=82 Identities=34% Similarity=0.635 Sum_probs=77.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
+..-++|||++|+|.++.|+|+++|++||+|.+..|+.|+.|+++|||+||+|.|.++|.+|++.-...|+||+..|+.|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 34578999999999999999999999999999999999999999999999999999999999998779999999999988
Q ss_pred CC
Q 038933 186 HP 187 (347)
Q Consensus 186 ~~ 187 (347)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 45
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=7.7e-15 Score=142.99 Aligned_cols=178 Identities=23% Similarity=0.271 Sum_probs=134.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..+.+.++|+|||..+..++|..+|..||+|..|.+. + .|. -|+|+|.++.+|.+|+..+. ..+...++++.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 4567889999999999999999999999999988443 3 332 59999999999999999987 566677787777
Q ss_pred cccCCCcccc-----CCC---C---------C--CCCC----C---------CCCCCCCcceEEEcCCCCCCCHHHHHHh
Q 038933 82 AIPKGHKLEE-----SNG---H---------S--GNCV----G---------DDDTEINTKKIFVGGLPLDIKEEEFKSY 129 (347)
Q Consensus 82 a~~~~~~~~~-----~~~---~---------~--~~~~----~---------~~~~~~~~~~l~V~nLp~~~t~e~L~~~ 129 (347)
+......... ... . + .... . .........+|||.||++++|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 6433222000 000 0 0 0000 0 0011122334999999999999999999
Q ss_pred hhcCceeEeecccccCCCC---CceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecC
Q 038933 130 FESFGTVTDAPVICDKETG---RPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186 (347)
Q Consensus 130 F~~~G~v~~v~i~~~~~~~---~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~ 186 (347)
|...|.|..+.|.+.++.. .+.|||||+|.+.++|++|++. +++.++|+.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999887665421 3569999999999999999996 7899999999999998
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.60 E-value=4.1e-14 Score=127.47 Aligned_cols=181 Identities=17% Similarity=0.231 Sum_probs=138.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEE--------EEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEE--------TLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI 72 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~ 72 (347)
++.-...|||.|||.++|.+++.++|++||.|.. |++.++. .|+.||-|.+.|-..++++.|++.++ ..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 4556677999999999999999999999997753 7888887 69999999999999999999999977 678
Q ss_pred eCeEeeeeecccCCCccccCCC-----------------CC---CCCCCCCCCCCCcceEEEcCCCC----CCC------
Q 038933 73 LGKEVEVKKAIPKGHKLEESNG-----------------HS---GNCVGDDDTEINTKKIFVGGLPL----DIK------ 122 (347)
Q Consensus 73 ~gr~i~v~~a~~~~~~~~~~~~-----------------~~---~~~~~~~~~~~~~~~l~V~nLp~----~~t------ 122 (347)
.|+.|.|+.|.-+......... .. .............++|.|.|+-. ..+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 8999999988443221111000 00 01111222334567888998832 222
Q ss_pred -HHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCC
Q 038933 123 -EEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 123 -~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~ 187 (347)
.++|++-.++||.|.+|.|.- ..+.|.+-|.|.+.++|..||+. ++..|+||.|..+...-
T Consensus 289 lkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 367778899999999997763 34678999999999999999995 99999999998775543
No 47
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.60 E-value=4.9e-15 Score=140.92 Aligned_cols=81 Identities=27% Similarity=0.376 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
.++|||+|||+++++++|+++|++||.|.+++|++|+.|+++||||||+|.+.++|.+|++.++ ..|.||.|.|.+...
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 3479999999999999999999999999999999999999999999999999999999999866 789999999999977
Q ss_pred CC
Q 038933 85 KG 86 (347)
Q Consensus 85 ~~ 86 (347)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 64
No 48
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=2.1e-14 Score=130.22 Aligned_cols=153 Identities=30% Similarity=0.495 Sum_probs=118.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
.++|||+|||+++|+++|+++|.+||.|..+.+..++.+++++|||||+|.+.++|..|+..++ ..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999998899999999999999999999999988 899999999999653
Q ss_pred ----CCCccc--cCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEE
Q 038933 85 ----KGHKLE--ESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITF 158 (347)
Q Consensus 85 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F 158 (347)
+..... .....................+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 00000111122233455677899999999999999999999999997776665544333333333333
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=9.6e-15 Score=105.27 Aligned_cols=69 Identities=35% Similarity=0.705 Sum_probs=64.0
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEee
Q 038933 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVE 78 (347)
Q Consensus 9 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~ 78 (347)
|||+|||+++|+++|+++|++||.|..+++..+ .+++.+++|||+|.+.++|++|++.++ ..+.|+.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 489999999999999999999999755 778888874
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.4e-14 Score=104.79 Aligned_cols=69 Identities=33% Similarity=0.641 Sum_probs=63.7
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEee
Q 038933 9 LFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVE 78 (347)
Q Consensus 9 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~ 78 (347)
|||+|||+++++++|+++|+.+|.|..+++..++. ++++++|||+|.+.++|++|++.++ ..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 9999999999999999999999987 889999874
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2.8e-14 Score=102.85 Aligned_cols=69 Identities=30% Similarity=0.733 Sum_probs=65.2
Q ss_pred EEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEE
Q 038933 112 IFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVE 181 (347)
Q Consensus 112 l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~ 181 (347)
|||+|||+++|+++|+++|++||.|..+.+..+ .+++.+++|||+|.+.++|++|++ .++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 568999999999999999999999 599999999885
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.54 E-value=1.5e-12 Score=118.32 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=129.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh---cCceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH---KHHVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~---~~~~~~gr~i~v 79 (347)
+..+-.|+|++|-..++|.||.+.++.||+|..+..+..+ ..|.|+|++.+.|+.++.. .+..+.|..-.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 4456789999999999999999999999999988888754 3799999999999999876 335788888888
Q ss_pred eecccCCCccccCCCCCCCCCCCCCCCCCcce--EEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEE
Q 038933 80 KKAIPKGHKLEESNGHSGNCVGDDDTEINTKK--IFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFIT 157 (347)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~ 157 (347)
.+++.+...... .....+.+. +-|-|--+.+|.+.|..+....|.|.+|.|++. ++. .|.||
T Consensus 102 NyStsq~i~R~g-----------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVE 165 (494)
T KOG1456|consen 102 NYSTSQCIERPG-----------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVE 165 (494)
T ss_pred ccchhhhhccCC-----------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEe
Confidence 888665544332 111122333 345566678999999999999999999988854 232 69999
Q ss_pred EcChHHHHHHHHh-CCcee--CCeEEEEEecCCCC
Q 038933 158 FDSEDAANNVLQT-RFHKL--KYKMVEVKRSHPKD 189 (347)
Q Consensus 158 F~~~e~a~~Al~~-~~~~i--~g~~i~v~~a~~~~ 189 (347)
|++.+.|++|... |+..| +=.+|+|++|.+..
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 9999999999985 77665 33578888888765
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=2.1e-14 Score=135.22 Aligned_cols=85 Identities=24% Similarity=0.457 Sum_probs=78.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
......++|||+|||+++|+++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++|++ +++..+.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345567899999999999999999999999999999999999999999999999999999999997 4999999999999
Q ss_pred EecCCC
Q 038933 183 KRSHPK 188 (347)
Q Consensus 183 ~~a~~~ 188 (347)
.++.+.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 988653
No 54
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.1e-14 Score=122.00 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.++.+|.|.|||.+++|++|+++|.+||.|..|.|.+|+.||.+||||||.|.+.++|++|++.++ .-+.+--|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 367789999999999999999999999999999999999999999999999999999999999977 5688889999999
Q ss_pred ccC
Q 038933 83 IPK 85 (347)
Q Consensus 83 ~~~ 85 (347)
.++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 765
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=8.4e-14 Score=100.69 Aligned_cols=69 Identities=29% Similarity=0.665 Sum_probs=63.3
Q ss_pred EEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEE
Q 038933 112 IFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVE 181 (347)
Q Consensus 112 l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~ 181 (347)
|||+|||+++++++|+++|+.||.|..+.+..++. ++++++|||+|.+.++|.+|++. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 89999999999999999999997 66999999874
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=117.21 Aligned_cols=163 Identities=16% Similarity=0.274 Sum_probs=112.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEec-CCCCCcceEEEEEEcchhHHHHHHHhcCc-eEe---CeEe
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRS-RLTGHGRGFGFVIFTKISMAEDALQHKHH-VIL---GKEV 77 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-~~~---gr~i 77 (347)
+..-|||||.+||.++...||..+|..|-..+...+... +...-++-+|||.|.+..+|.+|+..+|. .|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 445799999999999999999999999966666666553 33334568999999999999999999885 343 5566
Q ss_pred eeeecccCCCc--cccCCCCC-----------------------------------------------------------
Q 038933 78 EVKKAIPKGHK--LEESNGHS----------------------------------------------------------- 96 (347)
Q Consensus 78 ~v~~a~~~~~~--~~~~~~~~----------------------------------------------------------- 96 (347)
.|+.+....+. .+......
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 66655433322 11100000
Q ss_pred -------CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH
Q 038933 97 -------GNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169 (347)
Q Consensus 97 -------~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~ 169 (347)
..............+|||.||..+|||++|+.+|+.|--...++|... .| ...||++|++.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHH
Confidence 000000011233567999999999999999999999865655555422 12 2379999999999999984
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=8.3e-14 Score=123.54 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
..++|||+|||+.+|+++|+++|+.||+|.+|+|+.++. ++|||||+|.++++|++||..++..|.|+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999999998863 46899999999999999998777899999999999865
Q ss_pred CC
Q 038933 85 KG 86 (347)
Q Consensus 85 ~~ 86 (347)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 58
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.6e-13 Score=120.11 Aligned_cols=88 Identities=22% Similarity=0.371 Sum_probs=81.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+-++|||+-|+++++|.+|+..|+.||+|+.|.|+.|+.|++++|||||+|++.-+..+|.+. ++..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999985 99999999999998
Q ss_pred cCCCCCCCC
Q 038933 185 SHPKDRIDK 193 (347)
Q Consensus 185 a~~~~~~~~ 193 (347)
...+.....
T Consensus 178 ERgRTvkgW 186 (335)
T KOG0113|consen 178 ERGRTVKGW 186 (335)
T ss_pred ccccccccc
Confidence 776655443
No 59
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.51 E-value=4.3e-14 Score=129.71 Aligned_cols=173 Identities=14% Similarity=0.204 Sum_probs=127.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc---CceEeCeEeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK---HHVILGKEVEVK 80 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~---~~~~~gr~i~v~ 80 (347)
..++.|++|||||+++|+||.+++..||.|+.+.+++.+ ..||+||.|+++|..-+... ...+.|++|.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 468999999999999999999999999999999998876 38999999999988855542 247789999998
Q ss_pred ecccCCCccccCC----------------------CCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe
Q 038933 81 KAIPKGHKLEESN----------------------GHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD 138 (347)
Q Consensus 81 ~a~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~ 138 (347)
++........... .......+....+.+-.++.|.++-+.+|-|-|.++|++||.|..
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 8755432221100 000111123334456677899999999999999999999999998
Q ss_pred ecccccCCCCCceeE-EEEEEcChHHHHHHHHh-CCceeCC--eEEEEEecCC
Q 038933 139 APVICDKETGRPRGF-GFITFDSEDAANNVLQT-RFHKLKY--KMVEVKRSHP 187 (347)
Q Consensus 139 v~i~~~~~~~~~~G~-afV~F~~~e~a~~Al~~-~~~~i~g--~~i~v~~a~~ 187 (347)
|..+.. ..|| |+|+|.+.+.|..|... ++..|-. ..++|.++..
T Consensus 180 IiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 180 IITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 876633 2334 89999999999999865 5555433 3445555443
No 60
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.4e-14 Score=120.77 Aligned_cols=83 Identities=29% Similarity=0.501 Sum_probs=78.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+..+|.|.||+.++++++|+++|.+||.|..+.+.+|+.||.++|||||.|.+.++|.+||.. +++-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34677899999999999999999999999999999999999999999999999999999999986 89999999999999
Q ss_pred cCCC
Q 038933 185 SHPK 188 (347)
Q Consensus 185 a~~~ 188 (347)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9886
No 61
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.6e-13 Score=127.42 Aligned_cols=183 Identities=25% Similarity=0.351 Sum_probs=129.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCC-C--CCcce---EEEEEEcchhHHHHHHHhcCceEeCeE
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRL-T--GHGRG---FGFVIFTKISMAEDALQHKHHVILGKE 76 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~-t--g~~kG---~aFVeF~~~~~a~~Al~~~~~~~~gr~ 76 (347)
+.-+++|||++|||+++|++|...|..||.+. |....... . --++| |+|+.|+++.++++.|......-....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 45689999999999999999999999999873 33332111 1 12467 999999999999999887433222222
Q ss_pred eeeeecccCCCc--cccCC-CCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhh-cCceeEeecccccCCCCCcee
Q 038933 77 VEVKKAIPKGHK--LEESN-GHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFE-SFGTVTDAPVICDKETGRPRG 152 (347)
Q Consensus 77 i~v~~a~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~-~~G~v~~v~i~~~~~~~~~~G 152 (347)
+.|...+.+.+. ..+.. ++..-.........+.++|||++||.-++.++|-.+|+ -||.|..+-|=.|++-+-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 333222222111 11110 01111112334557789999999999999999999998 599999999999988899999
Q ss_pred EEEEEEcChHHHHHHHHhCCceeCC----eEEEEEecC
Q 038933 153 FGFITFDSEDAANNVLQTRFHKLKY----KMVEVKRSH 186 (347)
Q Consensus 153 ~afV~F~~~e~a~~Al~~~~~~i~g----~~i~v~~a~ 186 (347)
-|-|+|.+.++..+||.+.-.+|+. +.|+|+...
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 9999999999999999985444433 456666544
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7e-14 Score=108.99 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=75.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
..+.+|||+||++.++||+|.++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|+.|++. ++..++.+.|.+.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4578999999999999999999999999999999999999999999999999999999999996 899999999999875
Q ss_pred C
Q 038933 186 H 186 (347)
Q Consensus 186 ~ 186 (347)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=1.3e-13 Score=122.39 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=71.5
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~~ 188 (347)
.++|||+|||+.+|+++|+++|+.||.|++|+|+.++. ++|||||+|.+.++|+.|+.+++..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998854 578999999999999999999999999999999997653
No 64
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=2e-13 Score=114.89 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=78.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
++......|.|.||.+.+|.++|+.+|++||.|-+|.|+.|+.|..++|||||.|.+..+|+.|++. ++..++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 3445678999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
..|.-..
T Consensus 88 q~arygr 94 (256)
T KOG4207|consen 88 QMARYGR 94 (256)
T ss_pred hhhhcCC
Confidence 8876443
No 65
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3e-13 Score=119.69 Aligned_cols=85 Identities=24% Similarity=0.452 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh-cCceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH-KHHVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~-~~~~~~gr~i~v~~a 82 (347)
.+-+||||.-|+++++|.+|+..|++||+|..|+|++++.||+++|||||+|+++.+...|.+. .+.+|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4568999999999999999999999999999999999999999999999999999999999988 457999999999887
Q ss_pred ccCCCc
Q 038933 83 IPKGHK 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
......
T Consensus 179 RgRTvk 184 (335)
T KOG0113|consen 179 RGRTVK 184 (335)
T ss_pred cccccc
Confidence 554433
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.6e-13 Score=121.50 Aligned_cols=84 Identities=21% Similarity=0.484 Sum_probs=76.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
....++|+|+|||+...+-||+..|.+||+|.+|+|+.+. .-+|||+||+|++.++|++|.++ |+..+.||+|+|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4557899999999999999999999999999999998763 56899999999999999999986 99999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
++.+...
T Consensus 171 ATarV~n 177 (376)
T KOG0125|consen 171 ATARVHN 177 (376)
T ss_pred cchhhcc
Confidence 9887543
No 67
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=6.1e-13 Score=110.11 Aligned_cols=76 Identities=24% Similarity=0.447 Sum_probs=67.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~ 186 (347)
...+|||+|||.++.+.+|+++|.+||.|.+|.+... ..+-.||||+|++..+|+.||.. ++..++|..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4679999999999999999999999999999987533 34456999999999999999986 8999999999999864
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.2e-13 Score=110.98 Aligned_cols=79 Identities=27% Similarity=0.448 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.-.++|||+||+..+++.||+..|..||++.+|+|-.++ -|||||||+++.||++|+..|+ ..|+|..|.|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 346899999999999999999999999999999998865 3799999999999999999977 7899999999998
Q ss_pred ccCCC
Q 038933 83 IPKGH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76543
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.3e-13 Score=105.23 Aligned_cols=83 Identities=24% Similarity=0.282 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
..++||||+||+..++|+.|.++|++||+|..|.|=.|+.+.++=|||||+|-+.++|+.||+..+ ..+..++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 468999999999999999999999999999999999999999999999999999999999999966 7889999999987
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
..-.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 5433
No 70
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=114.48 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
...+|||+||++.+|+++|++||+.||+|.+|+|+++. +.+++|||+|+++++|+.|+...+..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999984 445799999999999999998888999999999998765
Q ss_pred CCC
Q 038933 85 KGH 87 (347)
Q Consensus 85 ~~~ 87 (347)
...
T Consensus 81 y~~ 83 (243)
T PLN03121 81 YED 83 (243)
T ss_pred ccc
Confidence 443
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.41 E-value=7.7e-12 Score=115.05 Aligned_cols=172 Identities=18% Similarity=0.261 Sum_probs=130.9
Q ss_pred CCeEEEcCC-CCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 6 LRKLFVGGV-SRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 6 ~r~l~V~nL-p~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
...|-|.|| +..+|.+-|..+|.-||.|.+|+|+.++. --|+|++.|...|+-|++.+. +.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467888888 45689999999999999999999999874 369999999999999999976 78999999999997
Q ss_pred cCCCccccCCCCC-CC----------------CCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe-ecccccC
Q 038933 84 PKGHKLEESNGHS-GN----------------CVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD-APVICDK 145 (347)
Q Consensus 84 ~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~ 145 (347)
............. +- ..-....-+++.+|.+.|+|.+++||+|+..|..-|-..+ .+..
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 7654433211100 00 0001112356789999999999999999999988775544 3333
Q ss_pred CCCCceeEEEEEEcChHHHHHHHHh-CCceeCCe-EEEEEecCC
Q 038933 146 ETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYK-MVEVKRSHP 187 (347)
Q Consensus 146 ~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~-~i~v~~a~~ 187 (347)
++.+-+|++++++.|.|..|+.. +.+.++.. .++|+++..
T Consensus 449 --~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 --QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 33344999999999999999864 77777665 788888754
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=3e-13 Score=126.79 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcch--hHHHHHHHhcC-ceEeCeEeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKI--SMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~--~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
....+|||+||++++|++||+..|+.||.|.+|.|++. +| ||||||+|.+. +++.+|++.++ ..+.|+.|.|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34578999999999999999999999999999999944 66 89999999987 78999999976 79999999999
Q ss_pred eccc
Q 038933 81 KAIP 84 (347)
Q Consensus 81 ~a~~ 84 (347)
.+.+
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9855
No 73
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.3e-12 Score=114.27 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=71.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~ 187 (347)
...+|||+||++.+|+++|++||+.||.|.+|+|++| ++.+++|||+|+++++|+.|+..++..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 4579999999999999999999999999999999988 4456899999999999999999999999999999988764
Q ss_pred C
Q 038933 188 K 188 (347)
Q Consensus 188 ~ 188 (347)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5.8e-12 Score=114.28 Aligned_cols=180 Identities=16% Similarity=0.269 Sum_probs=135.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
.-.+|||..+.++.+|+||+..|+.||+|..|.+-+++..+..|||+||||.+..+...|+..+| -.+.|.+|+|.++.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 45689999999999999999999999999999999999888899999999999999999999988 67889999998774
Q ss_pred cCCCcccc-----------------------------CC------------------CCC--------------------
Q 038933 84 PKGHKLEE-----------------------------SN------------------GHS-------------------- 96 (347)
Q Consensus 84 ~~~~~~~~-----------------------------~~------------------~~~-------------------- 96 (347)
........ .. ...
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 43321100 00 000
Q ss_pred ------------------------------CCCCC--------------------------C---------CCCCCCcce
Q 038933 97 ------------------------------GNCVG--------------------------D---------DDTEINTKK 111 (347)
Q Consensus 97 ------------------------------~~~~~--------------------------~---------~~~~~~~~~ 111 (347)
..... . -.....++.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 00000 0 001134456
Q ss_pred EEEcCC--CCCCC---HHHHHHhhhcCceeEeecccccCCCCCce----eEEEEEEcChHHHHHHHHh-CCceeCCeEEE
Q 038933 112 IFVGGL--PLDIK---EEEFKSYFESFGTVTDAPVICDKETGRPR----GFGFITFDSEDAANNVLQT-RFHKLKYKMVE 181 (347)
Q Consensus 112 l~V~nL--p~~~t---~e~L~~~F~~~G~v~~v~i~~~~~~~~~~----G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~ 181 (347)
|.++|. |.+++ +.+|++.+.+||.|.+|.|...+.++.-. ---||+|.....+.+|++. ++..|+|+++.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 778887 44554 36889999999999999988776544211 1259999999999999986 99999999987
Q ss_pred EEe
Q 038933 182 VKR 184 (347)
Q Consensus 182 v~~ 184 (347)
.+.
T Consensus 529 AE~ 531 (544)
T KOG0124|consen 529 AEV 531 (544)
T ss_pred hhh
Confidence 543
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.1e-12 Score=92.46 Aligned_cols=71 Identities=34% Similarity=0.622 Sum_probs=65.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+|+|+|||+++++++|+++|++||.|..+.+..++ +.++++|||+|.+.++|++|++.++ ..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7788999999999999999999877 78889988763
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=4.1e-12 Score=104.53 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=70.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~ 186 (347)
..++|||+||+..+++.||+..|..||++..|+|-.. +.|||||||++..+|+.|+.. ++..|.|..|.|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3679999999999999999999999999999999754 568999999999999999985 9999999999999887
Q ss_pred CCCC
Q 038933 187 PKDR 190 (347)
Q Consensus 187 ~~~~ 190 (347)
-+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6544
No 77
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=4.6e-13 Score=122.05 Aligned_cols=182 Identities=18% Similarity=0.240 Sum_probs=133.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
+...|..++|||..++.+|..||.-.......+.+-....|+..|.+.|.|.|.|.-+-|++...+.+.+|+|+|..+..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 44568899999999999999999865433333333333467777999999999999999999988899999999998866
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCcee----EeecccccCCCCCceeEEEEEEcC
Q 038933 85 KGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTV----TDAPVICDKETGRPRGFGFITFDS 160 (347)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v----~~v~i~~~~~~~~~~G~afV~F~~ 160 (347)
..--....-...... .-.....--.|.+++||+++|+.|+.+||.+...| +.|-+++. ..|+.+|-|||.|..
T Consensus 139 e~f~~iagg~s~e~~--~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAA--PFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFAC 215 (508)
T ss_pred hhheEecCCccccCC--CCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecC
Confidence 543222211110000 00011223467889999999999999999753333 33433333 349999999999999
Q ss_pred hHHHHHHHHhCCceeCCeEEEEEecCCCC
Q 038933 161 EDAANNVLQTRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 161 ~e~a~~Al~~~~~~i~g~~i~v~~a~~~~ 189 (347)
+++|+.|+.+|...|+-|+|++..++..+
T Consensus 216 ee~aq~aL~khrq~iGqRYIElFRSTaaE 244 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYIELFRSTAAE 244 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Confidence 99999999999889999999887766544
No 78
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=4.5e-12 Score=122.06 Aligned_cols=185 Identities=18% Similarity=0.283 Sum_probs=140.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
....+++|++||...++++++++...||++....++.+..+|.+|||||.+|.+......|+..++ ..+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 456789999999999999999999999999999999999999999999999999999999999977 5677799999988
Q ss_pred ccCCCccccCCCCCCCCC------CCCCCCCCcceEEEcCCC--CCCC--------HHHHHHhhhcCceeEeecccccCC
Q 038933 83 IPKGHKLEESNGHSGNCV------GDDDTEINTKKIFVGGLP--LDIK--------EEEFKSYFESFGTVTDAPVICDKE 146 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~V~nLp--~~~t--------~e~L~~~F~~~G~v~~v~i~~~~~ 146 (347)
.................. .......+...|.+.|+= .+.. -|+++..+++||.|..|.|.++..
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 665544333222111000 011223344555555541 1111 156677788999999999998722
Q ss_pred ---CCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 147 ---TGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 147 ---~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
..-..|-.||+|++.+++++|.+. +|.+|.+|.|.+.+....
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 233567789999999999999985 999999999999887543
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.37 E-value=2e-11 Score=113.17 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
...++|+|+|||.++||+.|++.|..||.|.++.|+. .++++| .|.|.++++|+.|+.. ++..++||.|+|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4557799999999999999999999999999999963 488887 7999999999999985 99999999999986
No 80
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.5e-12 Score=116.72 Aligned_cols=83 Identities=28% Similarity=0.478 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
..++|+|.|||+..-+-||+..|++||+|.+|.|+.+. .-+|||+||+|++.+||++|-++++ ..+.||+|+|..++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45889999999999999999999999999999999974 5689999999999999999999977 78999999999998
Q ss_pred cCCCcc
Q 038933 84 PKGHKL 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
.+-...
T Consensus 173 arV~n~ 178 (376)
T KOG0125|consen 173 ARVHNK 178 (376)
T ss_pred hhhccC
Confidence 764433
No 81
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=3.9e-12 Score=90.71 Aligned_cols=70 Identities=37% Similarity=0.649 Sum_probs=64.6
Q ss_pred EcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 11 VGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 11 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
|+|||+++++++|+++|++||.|..+.+..++.+++++++|||+|.+.++|.+|++.++ ..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999876 67888888763
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2.4e-13 Score=112.28 Aligned_cols=81 Identities=23% Similarity=0.539 Sum_probs=75.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
.++.-|||+|||+..||.||.-+|++||+|.+|.+++|+.||+++||||+.|++..+..-|+.. ++..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3466899999999999999999999999999999999999999999999999999999999985 999999999999866
Q ss_pred CC
Q 038933 186 HP 187 (347)
Q Consensus 186 ~~ 187 (347)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 54
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.33 E-value=2e-12 Score=108.97 Aligned_cols=80 Identities=36% Similarity=0.537 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
..+.+|.|-||-+-++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++||+.+. ..++|+.|.|+.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 456789999999999999999999999999999999999999999999999999999999999976 6889999999988
Q ss_pred c
Q 038933 83 I 83 (347)
Q Consensus 83 ~ 83 (347)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=7.2e-12 Score=89.66 Aligned_cols=71 Identities=34% Similarity=0.690 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 111 KIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 111 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
+|+|+|||..+++++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|++|++. ++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 77889999999999999999986 7799999998763
No 85
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.3e-11 Score=114.87 Aligned_cols=122 Identities=22% Similarity=0.334 Sum_probs=91.9
Q ss_pred EcchhHHHHHHHhcCceEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCc
Q 038933 55 FTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFG 134 (347)
Q Consensus 55 F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G 134 (347)
..+.++|.++|.+. .|..|.|+....+..-.... + ........+-|||+.||.++.|++|.-+|++.|
T Consensus 41 ~~~~eaal~al~E~----tgy~l~ve~gqrk~ggPpP~------w--eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG 108 (506)
T KOG0117|consen 41 VQSEEAALKALLER----TGYTLVVENGQRKYGGPPPG------W--EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIG 108 (506)
T ss_pred cccHHHHHHHHHHh----cCceEEEeccccccCCCCCc------c--cCCCCCCCceEEecCCCccccchhhHHHHHhcc
Confidence 34467777777643 24556666553332221111 1 112236688999999999999999999999999
Q ss_pred eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCcee-CCeEEEEEecCCC
Q 038933 135 TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKL-KYKMVEVKRSHPK 188 (347)
Q Consensus 135 ~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i-~g~~i~v~~a~~~ 188 (347)
+|.+++++.|+.+|.++|||||+|.+.+.|+.|++. |+++| .|+.|.|..+..+
T Consensus 109 ~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan 164 (506)
T KOG0117|consen 109 KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN 164 (506)
T ss_pred ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec
Confidence 999999999999999999999999999999999986 77766 7888877766543
No 86
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.2e-12 Score=109.60 Aligned_cols=85 Identities=25% Similarity=0.514 Sum_probs=79.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
....++|||++|...+++.-|...|-+||.|++|.++.|..+++.+||+||+|...|+|.+||. ++..++-||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999998 599999999999999
Q ss_pred cCCCCC
Q 038933 185 SHPKDR 190 (347)
Q Consensus 185 a~~~~~ 190 (347)
|.|...
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998664
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=5.1e-13 Score=110.30 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.++.-|||+|||++.||.||...|++||+|.+|.+++|+.||+++||||+.|++..+..-|+..++ ..|.||.|.|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 356679999999999999999999999999999999999999999999999999999988988866 7899999999876
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5544
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=7.8e-12 Score=89.13 Aligned_cols=70 Identities=37% Similarity=0.738 Sum_probs=64.6
Q ss_pred EcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 114 VGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 114 V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
|+|||..+++++|+++|++||.|..+.+..++.+++++|+|||+|.+.++|.+|++. ++..++++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999998887889999999999999999999986 7788999998763
No 89
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=6.7e-12 Score=117.88 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh--HHHHHHHHh-CCceeCCeEEEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE--DAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~--e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
....+|||+||++.+|++||+..|+.||.|.+|.|+ +.+| ||||||+|.+. .++.+||.. ++..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 346799999999999999999999999999999999 4456 89999999987 789999985 9999999999999
Q ss_pred ecCCC
Q 038933 184 RSHPK 188 (347)
Q Consensus 184 ~a~~~ 188 (347)
.|.+.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99865
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5.3e-12 Score=99.40 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
.......|||.++...+|+++|.+.|..||+|++|.+..|+.||-.+|||+|+|++.+.|++|+.. |+..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 345577899999999999999999999999999999999999999999999999999999999986 8899999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
|+..+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9976654
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.9e-12 Score=100.10 Aligned_cols=80 Identities=29% Similarity=0.517 Sum_probs=75.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccCC
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPKG 86 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~~ 86 (347)
-|||.++...+||++|.+.|..||+|.+|++..|+.||-.||||+|+|++.++|++|+..+| ..+.|..|.|.|+.-+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 48999999999999999999999999999999999999999999999999999999999987 78999999999996654
Q ss_pred C
Q 038933 87 H 87 (347)
Q Consensus 87 ~ 87 (347)
.
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 4
No 92
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.30 E-value=2.9e-11 Score=115.18 Aligned_cols=82 Identities=23% Similarity=0.475 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecC
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~ 186 (347)
.....|||.|||.+++.++|+++|.+||.|+...|....-.++...||||+|.+.++++.||.++...|+++.+.|+.-.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34455999999999999999999999999999887765433444489999999999999999999999999999998765
Q ss_pred CC
Q 038933 187 PK 188 (347)
Q Consensus 187 ~~ 188 (347)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2.1e-11 Score=87.72 Aligned_cols=73 Identities=38% Similarity=0.622 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+|+|+|||+.+++++|+++|+.+|.|..+.+..++.+ +++++|||+|.+.++|..|++.++ ..+.++++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999998744 778999999999999999999977 458899988763
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=93.00 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeee
Q 038933 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEV 79 (347)
Q Consensus 1 ~e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v 79 (347)
|.++-.|-|||+|||+++|.++..++|.+||.|..|+|=-.+ ..+|.|||.|++..+|++|+..+. ..+.++++.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 456778999999999999999999999999999999887655 456899999999999999999977 5788999999
Q ss_pred eecccC
Q 038933 80 KKAIPK 85 (347)
Q Consensus 80 ~~a~~~ 85 (347)
-+..+.
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 887543
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=6.8e-12 Score=120.11 Aligned_cols=81 Identities=32% Similarity=0.482 Sum_probs=77.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
+.|||+|||+++++++|.++|+..|.|.+++++.|+.||+++||||++|.+.+++++|++.++ .++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999988 7899999999998665
Q ss_pred CC
Q 038933 86 GH 87 (347)
Q Consensus 86 ~~ 87 (347)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6.6e-11 Score=85.06 Aligned_cols=73 Identities=33% Similarity=0.684 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 111 KIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 111 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ +++++|||+|.+.++|..|++. ++..++++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987664 7789999999999999999986 77879999998863
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.4e-11 Score=117.05 Aligned_cols=180 Identities=24% Similarity=0.418 Sum_probs=144.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccC-----------C-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceE
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQY-----------G-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVI 72 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~-----------G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~ 72 (347)
..+.++|+++|..++++....+|..- | .+..+.+-..+ ++||++|.+.++|..|+..+...+
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~~~~f 247 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALDGIIF 247 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcccchhh
Confidence 46789999999999999999999853 2 35556555544 699999999999999999988888
Q ss_pred eCeEeeeeecccCCCccccCCC-----CCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCC
Q 038933 73 LGKEVEVKKAIPKGHKLEESNG-----HSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKET 147 (347)
Q Consensus 73 ~gr~i~v~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~ 147 (347)
.|+.+.+...........-... ................+++|++||...++++++++...||.+....++.+..+
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 8998888766544332221111 11112223334456788999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 148 GRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 148 ~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
+.++||||.+|.+......|++. ++..++++.+.|..|-....
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 99999999999999999999985 99999999999988876443
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=6.1e-11 Score=89.25 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=72.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
++.-.+.|||.|||+.+|.|++.++|.+||.|..|+|-..+. .+|.|||.|++..+|.+|+.. .+..+.++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344578899999999999999999999999999999986644 588999999999999999985 8999999999998
Q ss_pred ecCCCC
Q 038933 184 RSHPKD 189 (347)
Q Consensus 184 ~a~~~~ 189 (347)
+-.+.+
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 877654
No 99
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.20 E-value=2.2e-11 Score=100.84 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
....+|||+||+..++++-|.++|-+.|+|.++.+++|+.+...+|||||+|.++|+|+-|++ ++..++-|+.|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 446799999999999999999999999999999999999999999999999999999999998 4888999999999999
Q ss_pred C
Q 038933 186 H 186 (347)
Q Consensus 186 ~ 186 (347)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=7.2e-11 Score=106.95 Aligned_cols=79 Identities=34% Similarity=0.764 Sum_probs=75.4
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~ 187 (347)
..+|||+|||+.+|+++|+++|.+||.|..+.+..++.+++++|+|||+|.+.++|..|++. ++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999998999999999999999999999996 77999999999999764
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.3e-11 Score=103.38 Aligned_cols=85 Identities=29% Similarity=0.508 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...|+|||++|-.++||.-|...|-.||.|.+|.+..|-.+.+.+|||||+|...|+|.+|+..++ .++.||.|.|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 457999999999999999999999999999999999999999999999999999999999999987 7899999999999
Q ss_pred ccCCCc
Q 038933 83 IPKGHK 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
.+.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 765443
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=4.6e-11 Score=114.46 Aligned_cols=82 Identities=28% Similarity=0.581 Sum_probs=78.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
..|||+|+|+++++++|..+|+..|.|.+++++.|+.||+++||+|++|.+.+++++|++. ++.++.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7999999999999999999999999999999999999999999999999999999999996 889999999999999776
Q ss_pred CCC
Q 038933 189 DRI 191 (347)
Q Consensus 189 ~~~ 191 (347)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 554
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.14 E-value=8.6e-11 Score=107.63 Aligned_cols=178 Identities=20% Similarity=0.294 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc-eEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH-VILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-~~~gr~i~v~~a~ 83 (347)
...++|++++.+.+.+.++..++...|.+....+........+++++.+.|...+.+..||..... .+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 478899999999999999999999999887777777666888999999999999999999998764 4555555444443
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEE-EcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIF-VGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
.......... .........+++ |.+|+..+++++|+.+|..+|.|..++++.+..++.++|+|||.|.+..
T Consensus 167 ~~~~~~~n~~--------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRPKNKL--------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccccchh--------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 3331111100 011122344555 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEecCCCCC
Q 038933 163 AANNVLQTRFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 163 ~a~~Al~~~~~~i~g~~i~v~~a~~~~~ 190 (347)
.+.+++......+.++.+.+.+..+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 239 SKKLALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hHHHHhhcccCcccCcccccccCCCCcc
Confidence 9999998756788999998888766543
No 104
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=9.9e-12 Score=123.73 Aligned_cols=148 Identities=28% Similarity=0.407 Sum_probs=127.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
+..++||.||+..+.+.+|...|..++.+..+++...+++++.+|+||++|..++++.+|+......+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 3457899999999999999999999998888888777778999999999999999999999986644444
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHH
Q 038933 85 KGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAA 164 (347)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a 164 (347)
...|+|.|+|+..|.++|+.+++++|.++++.++..+. |+++|.|||.|.++.++
T Consensus 736 ------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 736 ------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADA 790 (881)
T ss_pred ------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchh
Confidence 23689999999999999999999999999999887765 99999999999999999
Q ss_pred HHHHHh-CCceeCCeEEEEEecCC
Q 038933 165 NNVLQT-RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 165 ~~Al~~-~~~~i~g~~i~v~~a~~ 187 (347)
.+++.. +...+.-+.+.|..+.+
T Consensus 791 s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 791 SRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhcccchhhhhhhcCccccccCC
Confidence 999865 55666666666666555
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3.6e-10 Score=81.68 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=52.7
Q ss_pred HHHHHHHhc----cCCCeEEEE-EEecCCC--CCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeee
Q 038933 20 EETLREYFS----QYGTVEETL-IIRSRLT--GHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEV 79 (347)
Q Consensus 20 e~~L~~~F~----~~G~v~~v~-i~~~~~t--g~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v 79 (347)
+++|+++|+ +||.|.+|. ++.++.+ ++++|+|||+|.+.++|.+|++.++ ..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 6666656 8999999999999999999999866 7888999875
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3e-10 Score=82.11 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=53.6
Q ss_pred HHHHHHhhh----cCceeEeec-ccccCCC--CCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 123 EEEFKSYFE----SFGTVTDAP-VICDKET--GRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 123 ~e~L~~~F~----~~G~v~~v~-i~~~~~~--~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
+++|+++|+ +||.|.++. ++.++.+ ++++|+|||+|.+.++|.+|+.. ++..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 7777666 89999999999999999999985 999999999876
No 107
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.07 E-value=1.1e-10 Score=107.31 Aligned_cols=86 Identities=43% Similarity=0.777 Sum_probs=81.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~ 187 (347)
...+|||++|+|++++|.|++.|.+||+|.++.+++|+.+++++||+||+|++.+...+++....+.|+|+.|+++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56799999999999999999999999999999999999999999999999999999999999988999999999999998
Q ss_pred CCCCCC
Q 038933 188 KDRIDK 193 (347)
Q Consensus 188 ~~~~~~ 193 (347)
+.....
T Consensus 85 r~~~~~ 90 (311)
T KOG4205|consen 85 REDQTK 90 (311)
T ss_pred cccccc
Confidence 875543
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=7.7e-10 Score=76.23 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=48.9
Q ss_pred HHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 126 FKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 126 L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
|+++|++||+|.++.+..++ +++|||+|.+.++|++|++. ++..++|+.|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998664 57999999999999999985 999999999999875
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=1e-09 Score=75.61 Aligned_cols=55 Identities=31% Similarity=0.596 Sum_probs=48.5
Q ss_pred HHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 23 LREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 23 L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
|.++|++||+|..+.+..++ +++|||+|.+.++|++|++.++ ..+.|++|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998765 4799999999999999999866 7899999999885
No 110
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1e-09 Score=99.41 Aligned_cols=77 Identities=34% Similarity=0.573 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh-cC-ceEeCeEeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH-KH-HVILGKEVEV 79 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~-~~-~~~~gr~i~v 79 (347)
|+...++|||++|-..++|.+|+++|.+||+|.+|.++..+ ++|||+|.+.++|++|.++ .+ ..|+|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 45677899999998899999999999999999999999876 5999999999999999988 33 6789999999
Q ss_pred eeccc
Q 038933 80 KKAIP 84 (347)
Q Consensus 80 ~~a~~ 84 (347)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99977
No 111
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.97 E-value=8.1e-10 Score=97.87 Aligned_cols=72 Identities=28% Similarity=0.576 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecCCC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~~~ 188 (347)
.+|||+|||..+++.+|+.+|++||+|.++.|+++ |+||..++...++.||. .++.+|+|..|.|+.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 99999999999999999 5999999999999998877
Q ss_pred C
Q 038933 189 D 189 (347)
Q Consensus 189 ~ 189 (347)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.7e-10 Score=99.96 Aligned_cols=85 Identities=20% Similarity=0.354 Sum_probs=78.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
..++.+.|||-.|.+-+|++||.-+|+.||.|..+.|++|..||.+-.||||+|++.+++++|.- |++..|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34677899999999999999999999999999999999999999999999999999999999974 68899999999999
Q ss_pred ecCCCC
Q 038933 184 RSHPKD 189 (347)
Q Consensus 184 ~a~~~~ 189 (347)
+++.-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 886543
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.95 E-value=1.2e-09 Score=107.83 Aligned_cols=109 Identities=25% Similarity=0.450 Sum_probs=85.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
-+|||||++|+..++|.||.++|+.||+|.+|.++..+ ++|||.+....+|.+||.++. ..+.++.|.|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 47999999999999999999999999999999999876 799999999999999999965 78999999999998
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhc
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFES 132 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~ 132 (347)
.+..+..- .. .....+=|.-||+.--.++|+.+++.
T Consensus 494 g~G~kse~-k~------------~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 494 GKGPKSEY-KD------------YWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred cCCcchhh-hh------------hhhcccCeeEeehHhcCHHHHHhhhh
Confidence 77655411 00 01111223445776555557777753
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.8e-10 Score=98.04 Aligned_cols=137 Identities=25% Similarity=0.313 Sum_probs=111.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
++..|||||.||...++|+-|.++|-+-|+|..|.|..++ .++.| ||||+|+++.++.-|++.++ ..+.++.+.|+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4668999999999999999999999999999999888887 77777 99999999999999999976 567777776654
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
-..... .-|...++++.+...|+.-+++..+++.++.+ ++++-+.|+.+.-.
T Consensus 84 r~G~sh---------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 84 RCGNSH---------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRL 135 (267)
T ss_pred ccCCCc---------------------------chhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhh
Confidence 321100 01445678899999999999999999998876 78888999988776
Q ss_pred HHHHHHHH
Q 038933 162 DAANNVLQ 169 (347)
Q Consensus 162 e~a~~Al~ 169 (347)
.+.-.++.
T Consensus 136 ~~~P~~~~ 143 (267)
T KOG4454|consen 136 CAVPFALD 143 (267)
T ss_pred hcCcHHhh
Confidence 66666664
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.93 E-value=4.8e-08 Score=89.43 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=124.2
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 5 SLRKLFVGGVSRE-TNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 5 ~~r~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
+...+.|-+|... ++-+.|.++|-.||.|..|++++.+ + |-|.||+.|..++++|+..++ ..+.|.+|.|..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-P----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-c----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4567889999776 5788999999999999999999987 3 579999999999999999976 6789999999887
Q ss_pred ccCCCccccC-------------------CCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCce-eEeeccc
Q 038933 83 IPKGHKLEES-------------------NGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGT-VTDAPVI 142 (347)
Q Consensus 83 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~ 142 (347)
...-...... +-.+...........+++.|..-|.|..+||+.|.++|...+. ..+++++
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 4432221110 0011111122334567889999999999999999999976542 4567777
Q ss_pred ccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCe
Q 038933 143 CDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYK 178 (347)
Q Consensus 143 ~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~ 178 (347)
..+. .++. .+.+||++.++|..||.+ |...|.+.
T Consensus 441 p~ks-erSs-sGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 441 PLKS-ERSS-SGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred cccc-cccc-cceeeeehHHHHHHHHHHhccccccCC
Confidence 6653 3332 678999999999999986 55556543
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.7e-09 Score=98.10 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc-CceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK-HHVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~-~~~~~gr~i~v~~a 82 (347)
++...|||..|.+-+|.+||.-+|+.||+|.+|.|++|..||.+.-||||||++.+++++|.-++ |..|..++|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45678999999999999999999999999999999999999999999999999999999998775 57889999999988
Q ss_pred cc
Q 038933 83 IP 84 (347)
Q Consensus 83 ~~ 84 (347)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=3.3e-09 Score=89.88 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC-CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCce-EeCeEeeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY-GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHV-ILGKEVEVKK 81 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~-~~gr~i~v~~ 81 (347)
...-.++|..+|..+.+.+|..+|.++ |.|..+++-+++.||.+||||||||++++.|+-|.+.||.+ |.++.|.|..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345568999999999999999999998 78888889899999999999999999999999999998754 5678888877
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6443
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.89 E-value=3.1e-09 Score=103.77 Aligned_cols=182 Identities=13% Similarity=0.037 Sum_probs=134.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
+...+-+++.+.+.++.|+++||... .|..+.|..+.-.+...|-++|+|....++++|++..+..+-.|++++..+..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc
Confidence 45667788999999999999999744 45566666665444446889999999999999999998888899999987755
Q ss_pred CCCccccCC-----------CCCC----------CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe-eccc
Q 038933 85 KGHKLEESN-----------GHSG----------NCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD-APVI 142 (347)
Q Consensus 85 ~~~~~~~~~-----------~~~~----------~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~ 142 (347)
......... .+.. .......+......|||..||..+++.++.++|...-.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 443222210 0000 00001123345678999999999999999999999888877 5554
Q ss_pred ccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecCCC
Q 038933 143 CDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 143 ~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~~~ 188 (347)
+. -+++.++.|||+|..++++.+|.. ++.+.++.+.|+|.-...+
T Consensus 469 ~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 469 RL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred cC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 44 458889999999999877777765 5778888999998765543
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=6.2e-09 Score=88.22 Aligned_cols=83 Identities=28% Similarity=0.460 Sum_probs=75.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcC-ceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESF-GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
......++|..+|..+.+.+|..+|.+| |.|..+++-+++.||.++|||||+|++.+.|+-|-+ ||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456689999999999999999999888 788889998999999999999999999999999988 69999999999998
Q ss_pred ecCCC
Q 038933 184 RSHPK 188 (347)
Q Consensus 184 ~a~~~ 188 (347)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87665
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1.1e-08 Score=92.78 Aligned_cols=79 Identities=20% Similarity=0.451 Sum_probs=71.1
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh--CCceeCCeEE
Q 038933 103 DDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT--RFHKLKYKMV 180 (347)
Q Consensus 103 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~--~~~~i~g~~i 180 (347)
++.+....+|||++|...+++.+|+++|.+||+|..|.++..+ +.|||+|.+.++|+.|.++ +...|+|+.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 4456678899999999999999999999999999999988653 4999999999999999986 7788999999
Q ss_pred EEEecCC
Q 038933 181 EVKRSHP 187 (347)
Q Consensus 181 ~v~~a~~ 187 (347)
.|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999988
No 121
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=5.7e-09 Score=91.44 Aligned_cols=85 Identities=26% Similarity=0.355 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc-eEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH-VILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-~~~gr~i~v~ 80 (347)
|-.+.++|||-.||.+..+.||.+.|-.||.|.+.++..|+.|..+|.|+||.|.++.+|+.|+..+|. .|.=++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 567889999999999999999999999999999999999999999999999999999999999999874 5555778887
Q ss_pred ecccCC
Q 038933 81 KAIPKG 86 (347)
Q Consensus 81 ~a~~~~ 86 (347)
...++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 765543
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=3.7e-09 Score=106.11 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=124.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc-eEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH-VILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-~~~gr~i~v~ 80 (347)
+....++||++||+..+++.+|+..|..+|.|.+|.|.+.+ -++-.-|+||.|.+...+-.|+..+.. .|..-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 35678999999999999999999999999999999988865 444556999999999998888876552 2221122222
Q ss_pred ecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcC
Q 038933 81 KAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDS 160 (347)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~ 160 (347)
+... .....+.+++++|+.++....|...|..||.|..|.+-... -||+|.|++
T Consensus 447 lG~~--------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes 500 (975)
T KOG0112|consen 447 LGQP--------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYES 500 (975)
T ss_pred cccc--------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeeccc
Confidence 2211 12447789999999999999999999999999988775332 399999999
Q ss_pred hHHHHHHHH-hCCceeCC--eEEEEEecCCCC
Q 038933 161 EDAANNVLQ-TRFHKLKY--KMVEVKRSHPKD 189 (347)
Q Consensus 161 ~e~a~~Al~-~~~~~i~g--~~i~v~~a~~~~ 189 (347)
...+++|+. +.+..|++ +.+.|.++.+..
T Consensus 501 ~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 501 PPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred CccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 999999987 46666655 557777776544
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=2e-08 Score=96.21 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
..|+|||.+|+..+-..||+++|++||+|+..+|+++..+--.+.|+||++.+.++|.+|++.++ +.++||.|.|+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46899999999999999999999999999999999987677778999999999999999999987 79999999999875
Q ss_pred cC
Q 038933 84 PK 85 (347)
Q Consensus 84 ~~ 85 (347)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 43
No 124
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.74 E-value=5.4e-09 Score=91.09 Aligned_cols=167 Identities=22% Similarity=0.316 Sum_probs=118.9
Q ss_pred EEcCCCCCCcHHH-H--HHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc-eEeCeEeeeeecccC
Q 038933 10 FVGGVSRETNEET-L--REYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH-VILGKEVEVKKAIPK 85 (347)
Q Consensus 10 ~V~nLp~~~te~~-L--~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-~~~gr~i~v~~a~~~ 85 (347)
++.++-..+..+- | ...|+.+-.....+++++. .+.-.+++|+.|.......++-...+. ++.-++|.+...+..
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 4444444444333 2 4566666556666677766 566778999999887766666554332 333333444333222
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHH
Q 038933 86 GHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165 (347)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~ 165 (347)
+... ...-.....+||.+.|.-+++++.|-..|.+|-.....++++|+.|++++||+||-|.+..++.
T Consensus 179 edPs------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 179 EDPS------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred CCcc------------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 2111 1123355789999999999999999999999987788899999999999999999999999999
Q ss_pred HHHH-hCCceeCCeEEEEEecCCCC
Q 038933 166 NVLQ-TRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 166 ~Al~-~~~~~i~g~~i~v~~a~~~~ 189 (347)
.|+. +++..++.+.|.+..+.-++
T Consensus 247 rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHhhcccccccchhHhhhhhHHh
Confidence 9997 59999999999887665544
No 125
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.71 E-value=3.3e-08 Score=85.12 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCHHHHHH----hhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 108 NTKKIFVGGLPLDIKEEEFKS----YFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~----~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
+..+|||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|+.. ++..+-|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999999988 999999999998874 478999999999999999999986 899999999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.+|..+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99977653
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.71 E-value=3.5e-07 Score=89.80 Aligned_cols=80 Identities=6% Similarity=0.024 Sum_probs=65.0
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~~ 188 (347)
...+.+.+.+++..+.|+++||... .|..+.|..+...+...|.++|+|....++++|+..+...+-.|.+.+..+...
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCcc
Confidence 3456778999999999999999764 466666776666555689999999999999999998888888889888776554
Q ss_pred C
Q 038933 189 D 189 (347)
Q Consensus 189 ~ 189 (347)
.
T Consensus 390 ~ 390 (944)
T KOG4307|consen 390 G 390 (944)
T ss_pred c
Confidence 3
No 127
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.63 E-value=7.2e-08 Score=92.18 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
...+|||+|||.++++++|+++|.+||.|+...|......++...||||+|.+.++++.|+++....+.++++.|+...
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 3456999999999999999999999999988877764323444489999999999999999998778999999998753
No 128
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.59 E-value=1e-07 Score=94.67 Aligned_cols=80 Identities=26% Similarity=0.513 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
.-+++|||++|+..+++.||..+|+.||.|.+|.++. ++|+|||.+...++|.+|+.+ ....+..+.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3468899999999999999999999999999998864 467999999999999999986 789999999999999
Q ss_pred CCCCCCC
Q 038933 186 HPKDRID 192 (347)
Q Consensus 186 ~~~~~~~ 192 (347)
..+..+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 8776544
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.59 E-value=1.3e-07 Score=90.80 Aligned_cols=84 Identities=20% Similarity=0.460 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
.-.+.|||.+|...+...||+.+|++||.|+-.+++++..+.-.+.|+||++.+.++|.++|+. +..+|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3457799999999999999999999999999999998877778899999999999999999995 889999999999998
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.....
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 76653
No 130
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=1.2e-07 Score=84.14 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=77.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEe
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~ 184 (347)
...+...+||+|+.+.+|.+++..+|+.||.|..+.++.|+.++.++|||||+|.+.+.++.|+.+++..|.++.+.|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCC
Q 038933 185 SHPK 188 (347)
Q Consensus 185 a~~~ 188 (347)
-...
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6554
No 131
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=7.7e-08 Score=85.46 Aligned_cols=84 Identities=21% Similarity=0.397 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
...+.+.+||+|+.+.+|.++|...|+.||.|..+.|..++.++.+||||||+|.+.+.+++++..+...+.++.|.|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 35678999999999999999999999999999999999999899999999999999999999999666899999999987
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6543
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=2.7e-07 Score=81.87 Aligned_cols=85 Identities=21% Similarity=0.386 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
.....+|+|.|||+.++++||+++|..||.++.+-+..++. |++.|.|-|.|...++|.+|++. ++..++|+.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34567899999999999999999999999999999988865 99999999999999999999996 88999999999887
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
..+....
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 7665443
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=2.8e-07 Score=81.76 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.-..+|+|.|||+.|+++||+++|++|+.++.+-+.+++ .|++.|.|-|.|...++|.+|++.++ ..+.|+.+.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 334789999999999999999999999999999999998 89999999999999999999999976 6788999888876
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 5433
No 134
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=9.8e-09 Score=95.20 Aligned_cols=153 Identities=21% Similarity=0.388 Sum_probs=120.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC--ceEeCeEeeeeecc
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH--HVILGKEVEVKKAI 83 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~--~~~~gr~i~v~~a~ 83 (347)
.++|++||.+.++.+||+.+|...- ....-.++.. |||||.+.+...|.+|++.++ ..+.|++++|..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 5789999999999999999998542 1122223332 699999999999999999976 47889999999887
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeeccc-ccCCCCCceeEEEEEEcChH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVI-CDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~-~~~~~~~~~G~afV~F~~~e 162 (347)
++..+ ++++-|.|+|+...|+.|..+..+||.|..+..+ .+.++- ..-|+|.+.+
T Consensus 75 ~kkqr--------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~ 130 (584)
T KOG2193|consen 75 PKKQR--------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQ 130 (584)
T ss_pred hHHHH--------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHH
Confidence 65433 4568899999999999999999999999988754 333321 2347899999
Q ss_pred HHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 163 AANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 163 ~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
.+..|+.+ ++..+....+.+.+-.....
T Consensus 131 ~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 131 QHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 99999986 77888888888877655443
No 135
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.50 E-value=7.7e-07 Score=81.61 Aligned_cols=86 Identities=21% Similarity=0.366 Sum_probs=77.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe--------ecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCcee
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD--------APVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKL 175 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i 175 (347)
......+|||.+||..+++++|.++|.+++.|+. |+|.++++|+++||.|.|.|++...|++|+.. +...+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3456778999999999999999999999998843 78889999999999999999999999999996 88999
Q ss_pred CCeEEEEEecCCCCC
Q 038933 176 KYKMVEVKRSHPKDR 190 (347)
Q Consensus 176 ~g~~i~v~~a~~~~~ 190 (347)
.+..|+|..+..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999887664
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=9.7e-08 Score=91.80 Aligned_cols=170 Identities=18% Similarity=0.181 Sum_probs=105.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|+|-|||.++++++|+++|+.||+|.+|+..+.+ .+.+||+|-|.-+|++||+.++ .+|.|+.|....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 4578999999999999999999999999999998776654 3799999999999999999977 688998887322
Q ss_pred cccCCCccccCCC---CCCCCCCCCCC-CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEE
Q 038933 82 AIPKGHKLEESNG---HSGNCVGDDDT-EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFIT 157 (347)
Q Consensus 82 a~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~ 157 (347)
............. +.........+ .-.-..+ ++.|++..+..-++..|+-+|.++. +. ++.-.-.-|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhh
Confidence 2211111111000 00000000111 1112223 2338888887666777777776654 22 12222256788
Q ss_pred EcChHHHHHHHHhCCceeCCeEEEEEe
Q 038933 158 FDSEDAANNVLQTRFHKLKYKMVEVKR 184 (347)
Q Consensus 158 F~~~e~a~~Al~~~~~~i~g~~i~v~~ 184 (347)
|.+..++..+....+..+.+....+..
T Consensus 220 ~~~~~s~a~~~~~~G~~~s~~~~v~t~ 246 (549)
T KOG4660|consen 220 FADNRSYAFSEPRGGFLISNSSGVITF 246 (549)
T ss_pred hccccchhhcccCCceecCCCCceEEe
Confidence 888888844443233444444433333
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.46 E-value=5.8e-07 Score=81.81 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe--------ecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeC
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD--------APVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLK 176 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~ 176 (347)
......|||.|||.++|.+++.++|++||.|.. |++.++.. |+.+|-|.+.|--.++++-|++. +...|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445677999999999999999999999998843 78888866 99999999999999999999996 889999
Q ss_pred CeEEEEEecCCC
Q 038933 177 YKMVEVKRSHPK 188 (347)
Q Consensus 177 g~~i~v~~a~~~ 188 (347)
|+.|+|..|.-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999988643
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.45 E-value=1.3e-07 Score=82.62 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+.+.-+||++.|..+++.+-|-..|.+|-.-...++++++.|+++|||+||.|.+.+++..||.+++ .+++.|+|.+..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 4567789999999999999999999999888889999999999999999999999999999999977 566678887776
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+..+.
T Consensus 267 S~wke 271 (290)
T KOG0226|consen 267 SEWKE 271 (290)
T ss_pred hhHHh
Confidence 65443
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.44 E-value=1.6e-07 Score=86.44 Aligned_cols=168 Identities=16% Similarity=0.088 Sum_probs=122.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCC---CCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLT---GHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t---g~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
....|.|.||.+++|.+.+..+|...|+|.++.|+.+... ......|||.|.|...+..|-...+..+-++.|.|.+
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 4458999999999999999999999999999999985422 2335689999999999999988888889999888876
Q ss_pred cccCCCcccc-------C---------------------CCCCCCCCCCCC----------CCCCcceEEEcCCCCCCCH
Q 038933 82 AIPKGHKLEE-------S---------------------NGHSGNCVGDDD----------TEINTKKIFVGGLPLDIKE 123 (347)
Q Consensus 82 a~~~~~~~~~-------~---------------------~~~~~~~~~~~~----------~~~~~~~l~V~nLp~~~t~ 123 (347)
.......... . ..+........+ ...-.++++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 5332221110 0 000000000000 0112367999999999999
Q ss_pred HHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeC
Q 038933 124 EEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLK 176 (347)
Q Consensus 124 e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~ 176 (347)
.++.+.|..+|.|....+.... ..-+|.|+|....+...|+.+++..+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 9999999999999887775332 233788999998888888888765544
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.41 E-value=1.4e-06 Score=66.43 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=64.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccC--CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEe----CeEeee
Q 038933 7 RKLFVGGVSRETNEETLREYFSQY--GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVIL----GKEVEV 79 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~----gr~i~v 79 (347)
+||.|+|||...|.++|.+++... |...-+.+..|-.++.+.|||||.|.++++|.+..+..+ ..+. .+..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998754 678888999998899999999999999999999998754 3332 345566
Q ss_pred eeccc
Q 038933 80 KKAIP 84 (347)
Q Consensus 80 ~~a~~ 84 (347)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66543
No 141
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.21 E-value=3.4e-05 Score=70.41 Aligned_cols=78 Identities=14% Similarity=0.281 Sum_probs=65.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCc--eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFG--TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
....++||+||-|++|++||.+.....| .+.+++++.++.+|++||||+|...+..+.++.++. -..+|.|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456799999999999999999998766 567788999999999999999999999998888886 4577888765554
Q ss_pred e
Q 038933 184 R 184 (347)
Q Consensus 184 ~ 184 (347)
.
T Consensus 158 ~ 158 (498)
T KOG4849|consen 158 S 158 (498)
T ss_pred c
Confidence 3
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=1e-06 Score=75.44 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
...++|||.|+...++++-|.++|-+-|+|..|.|..+++ ++.+ ||||.|.++.+..-|++. ++..+.++.+.+..-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4468999999999999999999999999999999998876 6666 999999999999999985 888888887776543
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=7.2e-06 Score=81.01 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCC---CCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRL---TGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVE 78 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~ 78 (347)
....++|||+||++.++++.|...|..||+|.+|+|+..+. ..+.+.++||-|.+..+|++|++.++ ..+..+.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 35678999999999999999999999999999999998652 23567899999999999999999987 577888898
Q ss_pred eeeccc
Q 038933 79 VKKAIP 84 (347)
Q Consensus 79 v~~a~~ 84 (347)
+.|+..
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888843
No 144
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.05 E-value=3.7e-05 Score=66.24 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeeccc-ccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeC---CeE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVI-CDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLK---YKM 179 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~-~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~---g~~ 179 (347)
.....++|||.+||.++...+|..+|..|--.+...+- .++.....+-+|||+|.+.++|.+|+.+ ++..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34457899999999999999999999987555444333 2222223456999999999999999986 887774 678
Q ss_pred EEEEecCCCCCCCC
Q 038933 180 VEVKRSHPKDRIDK 193 (347)
Q Consensus 180 i~v~~a~~~~~~~~ 193 (347)
++|+.+....++.+
T Consensus 110 LhiElAKSNtK~kr 123 (284)
T KOG1457|consen 110 LHIELAKSNTKRKR 123 (284)
T ss_pred eEeeehhcCccccc
Confidence 89998877665443
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.03 E-value=3.1e-05 Score=59.11 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=65.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhc--CceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeC----CeEEEE
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFES--FGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLK----YKMVEV 182 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~----g~~i~v 182 (347)
++|-|+|+|-..|.++|.+++.. .|....+.++.|..+..+.|||||-|.+++.|.+-.+. ++.... .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998865 36677788999988999999999999999999988775 655443 566778
Q ss_pred EecCCC
Q 038933 183 KRSHPK 188 (347)
Q Consensus 183 ~~a~~~ 188 (347)
.+|.-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777543
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=1.6e-05 Score=61.93 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=43.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh---C---CceeCCeEEEEE
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT---R---FHKLKYKMVEVK 183 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~---~---~~~i~g~~i~v~ 183 (347)
..|+|.+++..++.++|++.|++||.|.+|.+.+... .|||.|.+.++|++|+++ . ...|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999876543 799999999999999985 3 455666666554
Q ss_pred e
Q 038933 184 R 184 (347)
Q Consensus 184 ~ 184 (347)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 147
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=7.6e-06 Score=71.26 Aligned_cols=70 Identities=23% Similarity=0.583 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~ 187 (347)
..|||++||+.+.+.+|..||.+||.+.++.+. .||+||+|++..+|..|+-. ++..|.+..+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999988775 35899999999999999964 77888887777776654
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=5.7e-07 Score=90.42 Aligned_cols=165 Identities=19% Similarity=0.167 Sum_probs=122.5
Q ss_pred CCCeEEEcCCCCCCcHH-HHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEE-TLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~-~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
..+...+.++-+...+. ..+..|..++.|+.|++......-...-+.++++....+++.|+......+.++.+.|..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 34556677776666555 67788999999999988773211111228899999999999998877777777877777765
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDA 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~ 163 (347)
+....... ...+.......++||+||+..+.+++|...|..++.+..+.+.-...+++.+|+|||+|.+++.
T Consensus 650 ~~~~~~~~--------kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 650 AEEKEENF--------KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred chhhhhcc--------CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 54422211 1122233456789999999999999999999999988888777666778999999999999999
Q ss_pred HHHHHHhCCceeCC
Q 038933 164 ANNVLQTRFHKLKY 177 (347)
Q Consensus 164 a~~Al~~~~~~i~g 177 (347)
+.+|+..+...+-|
T Consensus 722 ~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 722 AGAAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhhhh
Confidence 99999874333333
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=1e-05 Score=78.12 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=62.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVE 181 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~ 181 (347)
+....+|+|-|||..+++++|+.+|+.||+|+.|+.- ...+|.+||+|-|.-+|++|++. +..+|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567899999999999999999999999999986554 44578999999999999999986 88889998887
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.75 E-value=5.8e-05 Score=55.22 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=45.8
Q ss_pred CeEEEcCCCCCCcHHHHH----HHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 7 RKLFVGGVSRETNEETLR----EYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~----~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
..|+|.|||.+.+...|+ +++..|| .|.+| . + +.|+|.|.+.+.|++|++.+. ..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999998877655 5556786 67655 1 1 479999999999999999966 67899999999
Q ss_pred ecccC
Q 038933 81 KAIPK 85 (347)
Q Consensus 81 ~a~~~ 85 (347)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87443
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.74 E-value=2.1e-05 Score=72.28 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeE--------EEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeC
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVE--------ETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILG 74 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~g 74 (347)
...-+|||-+||..+++++|.++|.+||.|. .|+|.+++.|+++|+-|.|.|.|...|+.|+.-.. ..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456899999999999999999999998774 47788899999999999999999999999999855 78888
Q ss_pred eEeeeeecccCC
Q 038933 75 KEVEVKKAIPKG 86 (347)
Q Consensus 75 r~i~v~~a~~~~ 86 (347)
..|.|..+..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 888888775543
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.68 E-value=8.5e-05 Score=57.89 Aligned_cols=57 Identities=30% Similarity=0.397 Sum_probs=38.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
..|+|.+++..++.++|++.|++||.|..|.+.+.. ..|||.|.++++|++|++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHH
Confidence 358899999999999999999999999999888754 279999999999999998754
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.66 E-value=0.00013 Score=72.40 Aligned_cols=83 Identities=19% Similarity=0.341 Sum_probs=70.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccC---CCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDK---ETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMV 180 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~---~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i 180 (347)
.++..+.|||+||++.++++.|...|..||+|..++|+-.+ +..+.+-++||.|-+..+|++|++. ++..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35667889999999999999999999999999999887543 2234566899999999999999985 8888888888
Q ss_pred EEEecCC
Q 038933 181 EVKRSHP 187 (347)
Q Consensus 181 ~v~~a~~ 187 (347)
++.|+..
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 8888744
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.65 E-value=3.2e-05 Score=71.08 Aligned_cols=81 Identities=21% Similarity=0.394 Sum_probs=72.1
Q ss_pred CCeEE-EcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 6 LRKLF-VGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~-V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
..+++ |++|+.++++++|..+|..+|.|..+++..++.++.++|+|||+|.+..++.+++......+.++++.+.+..+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34555 99999999999999999999999999999999999999999999999999999998733678889999988765
Q ss_pred CC
Q 038933 85 KG 86 (347)
Q Consensus 85 ~~ 86 (347)
..
T Consensus 264 ~~ 265 (285)
T KOG4210|consen 264 RP 265 (285)
T ss_pred Cc
Confidence 54
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.55 E-value=5.3e-05 Score=69.19 Aligned_cols=75 Identities=15% Similarity=0.299 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCC--CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 8 KLFVGGVSRETNEETLREYFSQYG--TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+||+||-|.+|++||.+.+...| .+.++++..++.+|++||||+|...+..++++.|+.+. ..|+|..-.|...
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 589999999999999999998776 67788999999999999999999999999999999876 5778765555433
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.53 E-value=0.00052 Score=50.27 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=45.2
Q ss_pred ceEEEcCCCCCCCHHH----HHHhhhcCc-eeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 110 KKIFVGGLPLDIKEEE----FKSYFESFG-TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~----L~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
..|+|.|||.+.+... |++++..|| .|..|. .+.|.|.|.+.+.|++|++ +++..+-|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988765 456666775 666652 2479999999999999998 58899999999999
Q ss_pred ecCC
Q 038933 184 RSHP 187 (347)
Q Consensus 184 ~a~~ 187 (347)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8744
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00018 Score=48.68 Aligned_cols=52 Identities=31% Similarity=0.487 Sum_probs=41.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHH
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVL 168 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al 168 (347)
+.|-|.+.+.+..+. +..+|..||+|.++.+.... -..+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 467888998877654 55588899999998886332 28999999999999985
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.50 E-value=0.00021 Score=48.30 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHH
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDAL 65 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al 65 (347)
++.|-|.+.|.+..+ ++..+|.+||+|..+.+.... ...||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 367889999987664 455589999999998877333 48999999999999996
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.47 E-value=0.001 Score=62.62 Aligned_cols=67 Identities=21% Similarity=0.413 Sum_probs=55.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeeccccc---CCC--CCc--------eeEEEEEEcChHHHHHHHHhC
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICD---KET--GRP--------RGFGFITFDSEDAANNVLQTR 171 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~---~~~--~~~--------~G~afV~F~~~e~a~~Al~~~ 171 (347)
+..++++|.+.|||.+-.-+.|.++|..+|.|+.|+|... ... +.+ +-.|+|+|+..+.|.+|.+..
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999999999999999999999999876 222 222 335899999999999999864
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.24 E-value=0.0015 Score=50.30 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=53.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEE-EEecC------CCCCcceEEEEEEcchhHHHHHHHhcCceEeCe
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETL-IIRSR------LTGHGRGFGFVIFTKISMAEDALQHKHHVILGK 75 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~-i~~~~------~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr 75 (347)
..+.+-|.|-+.|.+ ....|.+.|++||.|.+.. +.++. ......+.-.|.|.++.+|++||.+++..+.|.
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 346677999999988 6678889999999997764 10100 011123589999999999999999999888874
Q ss_pred -Eeeeeecc
Q 038933 76 -EVEVKKAI 83 (347)
Q Consensus 76 -~i~v~~a~ 83 (347)
-+-|.++.
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 55577763
No 161
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00093 Score=64.42 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhc-cCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC----ceEeCeEee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFS-QYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH----HVILGKEVE 78 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~----~~~~gr~i~ 78 (347)
...|||||++||.-++.++|..+|+ -||.|..+-|=+|+.-+-+||-|=|.|.+..+--+|+++.= +.=..++|+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVE 447 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVE 447 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeee
Confidence 3579999999999999999999999 68999999999997789999999999999999999998722 222346777
Q ss_pred eeecc
Q 038933 79 VKKAI 83 (347)
Q Consensus 79 v~~a~ 83 (347)
|++-.
T Consensus 448 IkPYv 452 (520)
T KOG0129|consen 448 IKPYV 452 (520)
T ss_pred eccee
Confidence 76653
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.14 E-value=0.00038 Score=65.50 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=59.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEec---CCCC--C--------cceEEEEEEcchhHHHHHHHhc
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRS---RLTG--H--------GRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~---~~tg--~--------~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
|+..+|+|.+-|||.+-.-+.|.++|+.||.|..|+|... +.+. . .+-+|||||...+.|.||.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4568999999999999999999999999999999999886 3222 1 2467999999999999999987
Q ss_pred Cc
Q 038933 69 HH 70 (347)
Q Consensus 69 ~~ 70 (347)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 63
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.00099 Score=60.85 Aligned_cols=81 Identities=17% Similarity=0.368 Sum_probs=63.1
Q ss_pred CcceEEEcCCCCCCCHHH----H--HHhhhcCceeEeecccccCCCC-CceeEE--EEEEcChHHHHHHHHh-CCceeCC
Q 038933 108 NTKKIFVGGLPLDIKEEE----F--KSYFESFGTVTDAPVICDKETG-RPRGFG--FITFDSEDAANNVLQT-RFHKLKY 177 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~----L--~~~F~~~G~v~~v~i~~~~~~~-~~~G~a--fV~F~~~e~a~~Al~~-~~~~i~g 177 (347)
....+||-+||+.+..|+ | .++|.+||.|..|.|-+...+. ...+.+ ||+|.+.|+|..||.. ++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999999887766 3 4799999999998776543221 112223 9999999999999997 8999999
Q ss_pred eEEEEEecCCC
Q 038933 178 KMVEVKRSHPK 188 (347)
Q Consensus 178 ~~i~v~~a~~~ 188 (347)
|.|+..+...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887654
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.11 E-value=0.0032 Score=48.40 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=50.0
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeec-ccccCC------CCCceeEEEEEEcChHHHHHHHHhCCceeCCeE-E
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAP-VICDKE------TGRPRGFGFITFDSEDAANNVLQTRFHKLKYKM-V 180 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~-i~~~~~------~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~-i 180 (347)
..-|.|=+.|+.. ...|.+.|++||.|.+.. +.++.. .........|+|+++.+|.+||.+|+..+.|.. +
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 4568888998884 466778899999997764 322210 011233788999999999999999999998864 4
Q ss_pred EEEec
Q 038933 181 EVKRS 185 (347)
Q Consensus 181 ~v~~a 185 (347)
-|.++
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 46665
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.69 E-value=0.0037 Score=57.25 Aligned_cols=78 Identities=14% Similarity=0.360 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCcHHHH------HHHhccCCCeEEEEEEecCCC-CCcceE--EEEEEcchhHHHHHHHhc-CceEeCeE
Q 038933 7 RKLFVGGVSRETNEETL------REYFSQYGTVEETLIIRSRLT-GHGRGF--GFVIFTKISMAEDALQHK-HHVILGKE 76 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L------~~~F~~~G~v~~v~i~~~~~t-g~~kG~--aFVeF~~~~~a~~Al~~~-~~~~~gr~ 76 (347)
.-|||-+||+.+-.+++ .++|.+||.|..|.+-+.-.+ ....+. .||.|.+.++|..|+.+. +..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 34799999988866662 379999999988776654211 111222 399999999999999994 47889999
Q ss_pred eeeeeccc
Q 038933 77 VEVKKAIP 84 (347)
Q Consensus 77 i~v~~a~~ 84 (347)
|...+.+.
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 98877644
No 166
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.68 E-value=0.0095 Score=48.67 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=45.6
Q ss_pred HHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCCCCC
Q 038933 125 EFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 125 ~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~~~~ 190 (347)
+|.+.|+.||+|.=+++..+ .-+|+|.+-++|.+|+.+++.+++|+.|+|+.-.+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 67788899999988877755 36899999999999999999999999999998776543
No 167
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.63 E-value=0.0098 Score=41.32 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=47.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC---CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY---GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~---G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
.-..+|+|+++. +++.+||+.+|..| .....|..+.|. .|-|.|.+.+.|.+||..+
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 345689999995 69999999999998 134578888886 6999999999999999753
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.60 E-value=0.0043 Score=54.84 Aligned_cols=84 Identities=21% Similarity=0.350 Sum_probs=68.2
Q ss_pred HHHHHHhcC-ceEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEee
Q 038933 61 AEDALQHKH-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDA 139 (347)
Q Consensus 61 a~~Al~~~~-~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v 139 (347)
|+.|-.++. ....++.+.|.++.. ..|||.||...++.|.|.+.|+.||+|...
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~a 61 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-------------------------AELYVVNLMQGASNDLLEQAFRRFGPIERA 61 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-------------------------ceEEEEecchhhhhHHHHHhhhhcCccchh
Confidence 444444444 456789999998842 479999999999999999999999999887
Q ss_pred cccccCCCCCceeEEEEEEcChHHHHHHHHh
Q 038933 140 PVICDKETGRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 140 ~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
.+..|. .+++.+.++|+|...-.|.+|+..
T Consensus 62 v~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 62 VAKVDD-RGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred eeeecc-cccccccchhhhhcchhHHHHHHH
Confidence 666664 388999999999999988888875
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0063 Score=59.38 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=54.9
Q ss_pred CcceEEEcCCCCCCC------HHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeC
Q 038933 108 NTKKIFVGGLPLDIK------EEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLK 176 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t------~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~ 176 (347)
-...|+|.|+|---. ..-|..+|+++|+|....++.+.. +..+||.|++|++..+|+.|++. +++.|+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 356889999986422 234668899999999999998876 55999999999999999999985 776664
No 170
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.52 E-value=0.017 Score=42.46 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
.+..+|. +|..+...||.++|+.||.| .|..+.|- .|||...+.+.|..++....
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3445555 99999999999999999998 47777764 79999999999999988754
No 171
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.35 E-value=0.014 Score=47.20 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCCCCCeEEEcCCCCCC----cHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEe
Q 038933 2 EPVSLRKLFVGGVSRET----NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEV 77 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~----te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i 77 (347)
.+....||.|+=|..++ +-..+...++.||+|.+|.+.-.. .|.|.|.|..+|.+|+.+.+....|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 46678889998777665 333455667789999998765443 7999999999999999998877778888
Q ss_pred eeeec
Q 038933 78 EVKKA 82 (347)
Q Consensus 78 ~v~~a 82 (347)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 87774
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.26 E-value=0.0023 Score=56.51 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=59.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCC--------CCcee----EEEEEEcChHHHHHHHHh-CCce
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKET--------GRPRG----FGFITFDSEDAANNVLQT-RFHK 174 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~--------~~~~G----~afV~F~~~e~a~~Al~~-~~~~ 174 (347)
..-.||+++||+......|+++|+.||.|-.|.+.....+ +.++. .++|+|.+...|.++... |+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999998887765544 22222 378999999999988875 8888
Q ss_pred eCCeE
Q 038933 175 LKYKM 179 (347)
Q Consensus 175 i~g~~ 179 (347)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98875
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.20 E-value=0.018 Score=40.01 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=45.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcC---ceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESF---GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~---G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
...+|+|.|+. +.+.+||+.+|..| .....|+++-|. -|-|.|.+.+.|.+||.+
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 35689999984 58889999999988 235678888775 589999999999999863
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.20 E-value=0.0026 Score=56.20 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=57.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCC--------CCc----ceEEEEEEcchhHHHHHHHhcC-ceE
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLT--------GHG----RGFGFVIFTKISMAEDALQHKH-HVI 72 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t--------g~~----kG~aFVeF~~~~~a~~Al~~~~-~~~ 72 (347)
.-.||+.+||+.+...-|+++|+.||.|-.|.+-+...+ +.+ --.+.|||.+...|..+...+| ..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999998876544 222 2347899999999999988865 566
Q ss_pred eCeE
Q 038933 73 LGKE 76 (347)
Q Consensus 73 ~gr~ 76 (347)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 6653
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.17 E-value=0.021 Score=46.75 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=46.1
Q ss_pred HHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecccCCC
Q 038933 22 TLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGH 87 (347)
Q Consensus 22 ~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~~ 87 (347)
+|.+.|..||+|.=|+++.+. -+|+|.+-++|-+||+..+.++.|+.|.|...++.-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 777888899999888888764 7999999999999999999999999999988765443
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.014 Score=57.11 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=52.3
Q ss_pred CCCeEEEcCCCCC------CcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc
Q 038933 5 SLRKLFVGGVSRE------TNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH 70 (347)
Q Consensus 5 ~~r~l~V~nLp~~------~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~ 70 (347)
-...|.|-|+|-- .-..-|..+|+++|+|....+..+. .|.++||.|++|.+..+|++|++.++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhccc
Confidence 3457889999853 1233456789999999999999888 455999999999999999999998663
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.03 E-value=0.031 Score=41.09 Aligned_cols=55 Identities=22% Similarity=0.406 Sum_probs=40.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
...+..+|. .|......||.++|+.||.|. |..+.|. .|||.....+.|..|+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 445566666 999999999999999999884 5555443 699999999999988764
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.01 E-value=0.013 Score=54.78 Aligned_cols=78 Identities=8% Similarity=0.123 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCC---CCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKET---GRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~---~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~ 186 (347)
..|.|.||.+.+|.++++.+|.-.|.|..+.++..... ....-.|||.|.+...+..|....+..+-++.|.|..+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 38999999999999999999999999999998863221 234558999999999999998886677777777776554
Q ss_pred C
Q 038933 187 P 187 (347)
Q Consensus 187 ~ 187 (347)
.
T Consensus 88 ~ 88 (479)
T KOG4676|consen 88 D 88 (479)
T ss_pred C
Confidence 3
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.80 E-value=0.0046 Score=54.73 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=51.5
Q ss_pred HHHHHhhh-cCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCCC
Q 038933 124 EEFKSYFE-SFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 124 e~L~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~ 189 (347)
|||...|+ +||+|+.+.|..+.. -...|-+||.|...++|++|++. ++.++.|+.|.+..+.-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555555 899999987765432 45678899999999999999986 9999999999988775443
No 180
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.67 E-value=0.01 Score=52.51 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=62.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-----ceEeCeEeeeee
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-----HVILGKEVEVKK 81 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-----~~~~gr~i~v~~ 81 (347)
..|||.||+.-++-+.|.+.|+.||+|....++.|. .++..+.++|+|...-.|.+|+.... ....+++..|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999887777765 68888999999999999999998853 233456666654
Q ss_pred c
Q 038933 82 A 82 (347)
Q Consensus 82 a 82 (347)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 181
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.59 E-value=0.028 Score=50.70 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHhhhcCceeEeecccccCCCCCce-eEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 123 EEEFKSYFESFGTVTDAPVICDKETGRPR-GFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 123 ~e~L~~~F~~~G~v~~v~i~~~~~~~~~~-G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
++++++.+++||.|.+|.|+.++...... --.||+|+..++|.+|+-. ++..|+||.+...+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46788899999999999888765322211 1369999999999999874 999999999876544
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.20 E-value=0.0069 Score=53.65 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=47.6
Q ss_pred HHHHHHhc-cCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 21 ETLREYFS-QYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 21 ~~L~~~F~-~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
+||...|+ +||+|+++.|-.+. .-.-.|-+||.|..+++|++|++.++ ..+.|++|....+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444444 88999998777654 33456789999999999999999976 6888999988776
No 183
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.41 E-value=0.18 Score=45.85 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=57.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeC-eEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILG-KEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~g-r~i~v~~a~~~ 85 (347)
.=|-|-++|+.. -.-|..+|++||.|.....-. +| .+-+|.|.+..+|+|||.++...|.| .-|-|+.+..+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 346667777654 356778899999996654432 33 48899999999999999999977776 46778887776
Q ss_pred CCcccc
Q 038933 86 GHKLEE 91 (347)
Q Consensus 86 ~~~~~~ 91 (347)
......
T Consensus 271 svi~~s 276 (350)
T KOG4285|consen 271 SVINGS 276 (350)
T ss_pred HHhccc
Confidence 655444
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.39 E-value=0.12 Score=46.68 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=48.0
Q ss_pred HHHHHHHhccCCCeEEEEEEecCCCCCc-ceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 20 EETLREYFSQYGTVEETLIIRSRLTGHG-RGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 20 e~~L~~~F~~~G~v~~v~i~~~~~tg~~-kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
++++++-+++||.|..|.|...+..-.. .---||+|+..++|.+|+-.++ .+|.||.+...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 5688889999999999888876532111 1247999999999999998877 5777888866554
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.30 E-value=0.082 Score=52.18 Aligned_cols=79 Identities=9% Similarity=0.078 Sum_probs=62.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhh-cCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCce---eCCeE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFE-SFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHK---LKYKM 179 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~---i~g~~ 179 (347)
....++.|||.||-.-+|.-+|+.++. .+|.|+..+|-+- +..|||.|.+.++|.+.+.+ |+.. -+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456678999999999999999999998 5778888765333 34899999999999998875 5533 46778
Q ss_pred EEEEecCCCC
Q 038933 180 VEVKRSHPKD 189 (347)
Q Consensus 180 i~v~~a~~~~ 189 (347)
|.+.+.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 8888876554
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.12 E-value=0.19 Score=40.79 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=56.7
Q ss_pred CCCCcceEEEcCCCCCCC-HHHHH---HhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEE
Q 038933 105 TEINTKKIFVGGLPLDIK-EEEFK---SYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV 180 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t-~e~L~---~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i 180 (347)
...+..+|.|+=|..++. .+||+ ..++.||+|.+|... |+. .|.|.|.|..+|-+|+.+-....-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Grq--savVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQ--SAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCc--eEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 356778888877766643 34444 556789999999776 332 6999999999999999986667888888
Q ss_pred EEEecC
Q 038933 181 EVKRSH 186 (347)
Q Consensus 181 ~v~~a~ 186 (347)
.|++-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888753
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.06 E-value=0.11 Score=44.45 Aligned_cols=83 Identities=12% Similarity=-0.031 Sum_probs=47.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhcc-CCCe---EEEEEEecCC-CCC-cceEEEEEEcchhHHHHHHHhcC-ceEeC
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQ-YGTV---EETLIIRSRL-TGH-GRGFGFVIFTKISMAEDALQHKH-HVILG 74 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~-~G~v---~~v~i~~~~~-tg~-~kG~aFVeF~~~~~a~~Al~~~~-~~~~g 74 (347)
++....+|-||+||++.||+++.+.++. ++.- ..+.-..... ... .-.-|||.|.+.+++.......+ +.+.+
T Consensus 3 ~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 3 KEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3456679999999999999999997776 5544 3333222221 111 12469999999999999998865 34432
Q ss_pred -----eEeeeeeccc
Q 038933 75 -----KEVEVKKAIP 84 (347)
Q Consensus 75 -----r~i~v~~a~~ 84 (347)
....|++|.-
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 2445666644
No 188
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.05 E-value=0.039 Score=52.95 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCC-cHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRET-NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
+.+.|-+.-.|... |-++|..+|.+||+|..|.+-... --|.|+|.+..+|-+|.......|++|.|.|.|..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEec
Confidence 45556666666665 677999999999999999887763 26999999999998888777789999999999997
Q ss_pred cCCCccc
Q 038933 84 PKGHKLE 90 (347)
Q Consensus 84 ~~~~~~~ 90 (347)
+....+.
T Consensus 445 ps~~tn~ 451 (526)
T KOG2135|consen 445 PSPVTNI 451 (526)
T ss_pred CCcccCc
Confidence 7554433
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.94 E-value=0.097 Score=51.29 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=56.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhc--cCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEeee
Q 038933 6 LRKLFVGGVSRETNEETLREYFS--QYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEVEV 79 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~--~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i~v 79 (347)
.+.|.|+-||..+-+|+|+.+|. .|-++++|.+-.+. -=||+|++..||++|.+.+. .+|.|++|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 45678899999999999999997 47789999888875 35999999999999998865 4788988754
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.86 E-value=0.093 Score=39.26 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=47.1
Q ss_pred EEEEEcchhHHHHHHHhcC--ceEeCeEeeeeec--ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHH
Q 038933 51 GFVIFTKISMAEDALQHKH--HVILGKEVEVKKA--IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEF 126 (347)
Q Consensus 51 aFVeF~~~~~a~~Al~~~~--~~~~gr~i~v~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L 126 (347)
|+|+|.++.-|++.++... ..+++..+.|..+ .......-. -......++|.|.|||....+++|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-----------v~~~vs~rtVlvsgip~~l~ee~l 69 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-----------VFSGVSKRTVLVSGIPDVLDEEEL 69 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-----------EEEcccCCEEEEeCCCCCCChhhh
Confidence 6899999999999999855 3455666555443 222111111 011244678999999999999999
Q ss_pred HHhhh
Q 038933 127 KSYFE 131 (347)
Q Consensus 127 ~~~F~ 131 (347)
++..+
T Consensus 70 ~D~Le 74 (88)
T PF07292_consen 70 RDKLE 74 (88)
T ss_pred eeeEE
Confidence 87554
No 191
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.55 E-value=0.88 Score=46.88 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=43.6
Q ss_pred eEEEc-CCCCCCCHHHHHHhhhcCcee-----EeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 111 KIFVG-GLPLDIKEEEFKSYFESFGTV-----TDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 111 ~l~V~-nLp~~~t~e~L~~~F~~~G~v-----~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
+++|. +--..++..+|..+...-+.| -.|+|..+ |.||+.... .+...+.. +...+.|+.|.|+
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCceEEE
Confidence 34442 223557888888877654444 33555433 788887543 35555553 6788999999999
Q ss_pred ecCC
Q 038933 184 RSHP 187 (347)
Q Consensus 184 ~a~~ 187 (347)
.+..
T Consensus 559 ~~~~ 562 (629)
T PRK11634 559 LLGD 562 (629)
T ss_pred ECCC
Confidence 8753
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.47 E-value=0.3 Score=44.49 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=57.5
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEE-EEEecCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMV-EVKRSHP 187 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i-~v~~a~~ 187 (347)
..=|.|-++|+... .-|..+|++||.|.+...... --+-+|.|.+.-+|++||.+++..|+|..+ -|+.+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 34466667776544 456678999999987655422 228899999999999999999999988654 5777777
Q ss_pred CCCCC
Q 038933 188 KDRID 192 (347)
Q Consensus 188 ~~~~~ 192 (347)
+....
T Consensus 270 ksvi~ 274 (350)
T KOG4285|consen 270 KSVIN 274 (350)
T ss_pred HHHhc
Confidence 76543
No 193
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.73 E-value=0.08 Score=50.19 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=58.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh--CCceeCCeEEEEEecCC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT--RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~--~~~~i~g~~i~v~~a~~ 187 (347)
.++|++||.+.++..||+.+|... ++......=...|||||...+..-|.+|++. ...++.|+.+++..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 478999999999999999999754 1111111112357999999999999999996 33779999999998887
Q ss_pred CCCC
Q 038933 188 KDRI 191 (347)
Q Consensus 188 ~~~~ 191 (347)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 7643
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.48 E-value=0.082 Score=50.81 Aligned_cols=73 Identities=14% Similarity=0.294 Sum_probs=59.2
Q ss_pred ceEEEcCCCCCC-CHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCCC
Q 038933 110 KKIFVGGLPLDI-KEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 110 ~~l~V~nLp~~~-t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~~ 188 (347)
+.|-+.-.|... |-++|..+|.+||.|.+|.+-.... .|.|+|.+..+|-.|-.-++..|+++.|+|.|-.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 345555555553 5589999999999999998765432 689999999999888888999999999999998773
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.31 E-value=0.32 Score=47.80 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=54.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhc--CceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh---CCceeCCeEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFES--FGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT---RFHKLKYKMVE 181 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~---~~~~i~g~~i~ 181 (347)
...+.|.|+.||..+-.|+|+.+|.. |-++++|.+-.+. -=||+|++..+|+.|.+. ...+|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34567889999999999999999965 6677888775443 248999999999999874 44778888875
Q ss_pred E
Q 038933 182 V 182 (347)
Q Consensus 182 v 182 (347)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.77 E-value=0.42 Score=40.81 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=40.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhc-Ccee---Eeec--ccccCCCCCceeEEEEEEcChHHHHHHHHh-CCcee
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFES-FGTV---TDAP--VICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKL 175 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~-~G~v---~~v~--i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i 175 (347)
...+|.|++||+++|++++.+.++. ++.- ..+. ..........-..|||.|.+.+++..-... +++.|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 3568999999999999999987665 4433 2222 111111111234699999999998777765 66554
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.12 E-value=0.72 Score=44.34 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=54.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
+...+.|+|-.+|..+|-.||..|+..+- .|..+++++|....+. .++|.|.+.++|....+..|
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry--mvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY--MVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE--EEEEEeccchhHHHHHHHcC
Confidence 33478899999999999999999998775 6889999997643333 58999999999999999865
No 198
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.87 E-value=0.31 Score=50.50 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeC--eEeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILG--KEVEVK 80 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~g--r~i~v~ 80 (347)
...+.+|+++|+.++....|...|..||.|..|.+-... -||+|.+++...++.|+..+. ..|.+ +++.|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 457889999999999999999999999999887665533 399999999999999999865 34443 667777
Q ss_pred eccc
Q 038933 81 KAIP 84 (347)
Q Consensus 81 ~a~~ 84 (347)
++..
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 6644
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.73 E-value=0.12 Score=47.68 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=60.7
Q ss_pred CcceEEEcCCCCCCCHHHHH---HhhhcCceeEeecccccCCCC---CceeEEEEEEcChHHHHHHHHh-CCceeCCeEE
Q 038933 108 NTKKIFVGGLPLDIKEEEFK---SYFESFGTVTDAPVICDKETG---RPRGFGFITFDSEDAANNVLQT-RFHKLKYKMV 180 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~---~~F~~~G~v~~v~i~~~~~~~---~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i 180 (347)
..+.+||-+|+.....+.+. +.|.+||.|..|.+..+.... ...--++|+|+..++|..||.. ++..++|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34668899999886655553 578889999999888765211 1112379999999999999987 8888889887
Q ss_pred EEEecCCCC
Q 038933 181 EVKRSHPKD 189 (347)
Q Consensus 181 ~v~~a~~~~ 189 (347)
+..+...+-
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 776666554
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.46 E-value=3.5 Score=32.25 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=48.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcC-ceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESF-GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLK 176 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~ 176 (347)
....+.+...|+.++.++|..+.+.+ ..|..++|++|.. .++-.+.+.|.+.++|+.-... ||..++
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34556666677777778887776665 3567888988743 3565789999999999998875 776654
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.60 E-value=1.6 Score=37.55 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=43.2
Q ss_pred CHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-C--CceeCCeEEEEEecCCC
Q 038933 122 KEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-R--FHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 122 t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~--~~~i~g~~i~v~~a~~~ 188 (347)
..+.|+++|..++.+..+..++.- +-..|.|.+.++|.+|... + +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999988777666442 2578999999999999986 6 78999999999988543
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.09 E-value=13 Score=34.06 Aligned_cols=168 Identities=13% Similarity=0.166 Sum_probs=98.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCC-------CCCcceEEEEEEcchhHHHHHH----H---h
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRL-------TGHGRGFGFVIFTKISMAEDAL----Q---H 67 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~-------tg~~kG~aFVeF~~~~~a~~Al----~---~ 67 (347)
++.-.|.|.+.|+..+++--++...|-+||+|++|.++.+.. .-+..-...+.|-+.+.+-... + +
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999998751 1122347899999998865443 2 2
Q ss_pred cCceEeCeEeeeeecccCCCc----cccCCCCC---CCCCC-CCCCCCCcceEEEcCCCCCCCHHHH-HHh---hhcCc-
Q 038933 68 KHHVILGKEVEVKKAIPKGHK----LEESNGHS---GNCVG-DDDTEINTKKIFVGGLPLDIKEEEF-KSY---FESFG- 134 (347)
Q Consensus 68 ~~~~~~gr~i~v~~a~~~~~~----~~~~~~~~---~~~~~-~~~~~~~~~~l~V~nLp~~~t~e~L-~~~---F~~~G- 134 (347)
....+....|.+....-+-.. +....+-. ...-. .-.....++.|.|.=- ..+.++++ .+. ...-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 334566666666554321111 00000000 00000 0012234566766533 33433332 222 22212
Q ss_pred ---eeEeecccccCCC--CCceeEEEEEEcChHHHHHHHHh
Q 038933 135 ---TVTDAPVICDKET--GRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 135 ---~v~~v~i~~~~~~--~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
.++.|.++..... .-++.||.++|-+...|...+..
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dY 210 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDY 210 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHH
Confidence 5677777754332 23677999999999888887764
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.67 E-value=4.2 Score=31.82 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=41.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhccC-CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 8 KLFVGGVSRETNEETLREYFSQY-GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
.+.+...|+.++-++|..+.+.+ ..|..++|++|... ++=-+.+.|.+.++|+......|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhC
Confidence 34444445555666776666665 46778899987532 33468999999999999998755
No 204
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.47 E-value=0.33 Score=44.92 Aligned_cols=78 Identities=17% Similarity=0.329 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCcHHHHH---HHhccCCCeEEEEEEecCC----CCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEe
Q 038933 6 LRKLFVGGVSRETNEETLR---EYFSQYGTVEETLIIRSRL----TGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEV 77 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~~----tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i 77 (347)
..-+||-+|+.....+++. ++|.+||.|..|.+..+.. .+- ---++|+|...++|..|+..-+ ..+.|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3457888898776555444 4899999999998888662 111 1238999999999999999855 56777876
Q ss_pred eeeeccc
Q 038933 78 EVKKAIP 84 (347)
Q Consensus 78 ~v~~a~~ 84 (347)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 6655543
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.46 E-value=2.2 Score=36.65 Aligned_cols=61 Identities=28% Similarity=0.229 Sum_probs=43.5
Q ss_pred cHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEeeeeecccC
Q 038933 19 NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEVEVKKAIPK 85 (347)
Q Consensus 19 te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i~v~~a~~~ 85 (347)
..+.|+++|..++.+..+..++.- +-..|.|.+.++|.+|...++ ..+.|..+.|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 468899999999988877777643 358999999999999999865 5788999999888443
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=85.98 E-value=0.88 Score=37.45 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=60.1
Q ss_pred eEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCC-CCHHHHH
Q 038933 49 GFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD-IKEEEFK 127 (347)
Q Consensus 49 G~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~e~L~ 127 (347)
++..++|.+++++.++++...-.+.+..+.++.-.+........ .....-=|.|.|||.. .+++-|+
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~------------~~~~~vWVri~glP~~~~~~~~~~ 123 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK------------FEHIPVWVRIYGLPLHLWSEEILK 123 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc------------eeccchhhhhccCCHHHhhhHHHH
Confidence 58999999999999999987767788888777665332211110 0112234778899988 6778889
Q ss_pred HhhhcCceeEeeccccc
Q 038933 128 SYFESFGTVTDAPVICD 144 (347)
Q Consensus 128 ~~F~~~G~v~~v~i~~~ 144 (347)
++.+.+|.+..+.....
T Consensus 124 ~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 124 AIGSKIGEPIEVDENTL 140 (153)
T ss_pred HHHHhcCCeEEEEcCCC
Confidence 99999999988876543
No 207
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=84.82 E-value=0.59 Score=46.41 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=56.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhc-cCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc-eE---eCeEee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFS-QYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH-VI---LGKEVE 78 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-~~---~gr~i~ 78 (347)
..+..|||.||=.-.|.-.|+.++. .+|.|++.+ .|+ -|..|||.|.+.++|.+....++. .+ +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHH--HHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3467899999999999999999998 566777663 332 234799999999999998888663 22 356777
Q ss_pred eeeccc
Q 038933 79 VKKAIP 84 (347)
Q Consensus 79 v~~a~~ 84 (347)
+.+...
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 766543
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.82 E-value=0.46 Score=47.70 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..-+|||+|+...+..+-++.....||-|.+++... |+|.+|.+..-...|+..+. ..+.+..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999887664443 89999999999998888765 456677766654
No 209
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=82.30 E-value=8.1 Score=36.14 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=3.5
Q ss_pred HHHHHhhh
Q 038933 124 EEFKSYFE 131 (347)
Q Consensus 124 e~L~~~F~ 131 (347)
++|...|+
T Consensus 243 ~ei~~~~~ 250 (465)
T KOG3973|consen 243 EEIQSILS 250 (465)
T ss_pred HHHHHHHH
Confidence 34444443
No 210
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=81.86 E-value=2.2 Score=30.28 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=48.0
Q ss_pred HHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 21 ETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 21 ~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
++|++.|...| +|..|+-+..+.++.+...-||+.+...+..++++- ..+.+..|.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCC
Confidence 57888888888 788888888887888888999999888774444332 367888999988753
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.51 E-value=1.2 Score=46.05 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=60.7
Q ss_pred EEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCc--eeCCeEEEEEecCCC
Q 038933 112 IFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFH--KLKYKMVEVKRSHPK 188 (347)
Q Consensus 112 l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~--~i~g~~i~v~~a~~~ 188 (347)
.++.|.+-..+-.-|..+|++||.|.+++.+++-. .|.|+|.+.++|..|+++ ++. ...|-..+|..+...
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 44556666777788999999999999999988865 799999999999999985 443 357778888888876
Q ss_pred CCCCC
Q 038933 189 DRIDK 193 (347)
Q Consensus 189 ~~~~~ 193 (347)
.....
T Consensus 375 ~~~ep 379 (1007)
T KOG4574|consen 375 PMYEP 379 (1007)
T ss_pred ccccC
Confidence 65443
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.84 E-value=13 Score=26.12 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=40.1
Q ss_pred CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeee
Q 038933 17 ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEV 79 (347)
Q Consensus 17 ~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v 79 (347)
.++-++|+..+.+|.- .+|+.++ | || ||.|.+..+|+++....+ ..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999964 3455565 4 34 899999999999999865 4555555543
No 213
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.64 E-value=4.9 Score=38.21 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCC-eEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEe
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGT-VEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEV 77 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i 77 (347)
-.+.|-|-++|.....+||...|+.|+. --+|+.+.|. .||-.|.+...|..||...+..+.=|+|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 4577899999999999999999999963 3467777775 7999999999999999875444433333
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.33 E-value=5.6 Score=28.56 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCcHHHHHHHhccCC-----CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 17 ETNEETLREYFSQYG-----TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 17 ~~te~~L~~~F~~~G-----~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.++..+|..++...+ .|-.|++..+ |+||+-... .|+++++.++ ..+.|++|.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478888998887663 4556777664 899988765 6777777755 7899999998864
No 215
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=77.49 E-value=3.1 Score=35.22 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=45.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCC--CcceEEEEEEcchhHHHHHHHhcCceEe
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTG--HGRGFGFVIFTKISMAEDALQHKHHVIL 73 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg--~~kG~aFVeF~~~~~a~~Al~~~~~~~~ 73 (347)
..|++|.+ |.+...++|.++-+ |.+..|.+.+.. .+ ..+|-.||.|.+.+.|.+.++.......
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~ 175 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGA 175 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhcc
Confidence 34667776 44555566666655 788888777654 33 6789999999999999998876543333
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=76.73 E-value=1.7 Score=43.81 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+..+|||+|+...+..+-++.+...+|.|..+.... |+|..|..+.....|+.. +...+++..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45677999999999999999999999999998776553 899999999998888875 66778887776554
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.83 E-value=6.5 Score=39.22 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHhccC----CCeEEEEEEecC
Q 038933 4 VSLRKLFVGGVSRE-TNEETLREYFSQY----GTVEETLIIRSR 42 (347)
Q Consensus 4 ~~~r~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~ 42 (347)
...++|-|-||.|+ +...||.-+|+.| |.|.+|.|.+..
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe 215 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE 215 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh
Confidence 45789999999998 6888999999877 689999998865
No 218
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=75.63 E-value=3.6 Score=29.17 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=46.9
Q ss_pred HHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 21 ETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 21 ~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
++|++.|.+.| ++..|+-+..+.++.+...-||+.....+....++. ..+++++|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~i--k~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILNI--KTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEee--hhhCCeeEEEecCc
Confidence 47888899888 788999998887788888999999877654442221 36788999998764
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=75.12 E-value=1.9 Score=44.68 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=59.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc---eEeCeEeeeeecc
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH---VILGKEVEVKKAI 83 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~---~~~gr~i~v~~a~ 83 (347)
.+.++-|.+-..+-..|-.+|.+||.|.+++.+++- ..|.|+|.+.+.|..|+..++. .+.|-+.+|..+.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 345566777788999999999999999999998886 4799999999999999998662 3557777777765
Q ss_pred cCC
Q 038933 84 PKG 86 (347)
Q Consensus 84 ~~~ 86 (347)
.-+
T Consensus 373 ~~~ 375 (1007)
T KOG4574|consen 373 TLP 375 (1007)
T ss_pred ccc
Confidence 444
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=69.44 E-value=23 Score=25.32 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCCCHHHHHHhhhcCc-----eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 119 LDIKEEEFKSYFESFG-----TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 119 ~~~t~e~L~~~F~~~G-----~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
..++..+|..++...+ .|-.|.|..+ |+||+-... .|+.++.. ++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578888888887653 3445666544 889988554 56666665 889999999999865
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.54 E-value=18 Score=35.19 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=53.9
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcC-ceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESF-GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKY 177 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g 177 (347)
+..|+|-.+|-.+|-.||..|...+ -.|.+++|++|.. ..+=.++|.|.+.++|..-.+. |+..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7789999999999999999999765 3678899999743 2344589999999999998875 6666543
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=66.06 E-value=36 Score=23.98 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=38.4
Q ss_pred CCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEE
Q 038933 120 DIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVE 181 (347)
Q Consensus 120 ~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~ 181 (347)
.++-++|+..+.+|. ..+| ..|+ .|| ||.|.+.++|+++... ++..+....+.
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 578899999999985 3333 3332 234 8999999999999986 66666555443
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=64.97 E-value=28 Score=25.77 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=44.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhcc-CC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 8 KLFVGGVSRETNEETLREYFSQ-YG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
.-|+--.+..++..+|++.+++ |+ .|.+|..+..+ .+. -=|||.+....+|.......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~--KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGE--KKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--EEEEEEeCCCCcHHHHHHhhc
Confidence 3455567889999999999987 45 67788777765 222 259999999999988876543
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.16 E-value=12 Score=35.81 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=49.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCcee-EeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCe
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTV-TDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYK 178 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~ 178 (347)
-.+.|-|.++|...-.+||...|+.|+.- -+|+++.|. .||-.|.+...|..||.+...++.-|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEee
Confidence 35678899999999999999999988643 456677664 79999999999999997643343333
No 225
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.62 E-value=32 Score=25.01 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=43.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhcc-CC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc
Q 038933 8 KLFVGGVSRETNEETLREYFSQ-YG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
.-|+-..+..++..+|++.+++ |+ .|..|..+.-+. +. -=|||.+...++|...-.+.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~--KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GE--KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHhh
Confidence 4556677889999999999987 45 677777776552 21 25999999988888776654
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.49 E-value=20 Score=32.60 Aligned_cols=52 Identities=21% Similarity=0.488 Sum_probs=36.0
Q ss_pred CCCCcceEEEcCCCCC------------CCHHHHHHhhhcCceeEeecccc-----cCCCCCceeEEEE
Q 038933 105 TEINTKKIFVGGLPLD------------IKEEEFKSYFESFGTVTDAPVIC-----DKETGRPRGFGFI 156 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~------------~t~e~L~~~F~~~G~v~~v~i~~-----~~~~~~~~G~afV 156 (347)
+.....+|++.+||-. .+++.|+..|+.||.|..|.|+. ...+++..|+-|-
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~ 213 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFH 213 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceee
Confidence 3445678999888742 35678999999999999887764 2345555444333
No 227
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=54.55 E-value=28 Score=24.58 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=44.3
Q ss_pred HHHHHhhhcCc-eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCC
Q 038933 124 EEFKSYFESFG-TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 124 e~L~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~ 187 (347)
++|++.|...| +|..+.-+..+.+.++.-.-||+.+...+...++ +-..+.+..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCC
Confidence 56778887766 7788887777766777778899987765533333 33668888888887654
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.86 E-value=31 Score=23.90 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=16.2
Q ss_pred HHHHHHHhccCCCeEEEEEEe
Q 038933 20 EETLREYFSQYGTVEETLIIR 40 (347)
Q Consensus 20 e~~L~~~F~~~G~v~~v~i~~ 40 (347)
.++|+++|+..|+|.-+.+-.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 468999999999986555443
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=52.73 E-value=40 Score=30.82 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=34.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcch
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKI 58 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~ 58 (347)
...-|+++|||.++--.||+..+.+.+-+- ..+... | +.|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---G-HFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeee---c-CCcceeEecCCc
Confidence 345699999999999999999998876431 222221 1 336799999654
No 230
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=51.97 E-value=18 Score=33.70 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=37.1
Q ss_pred EEEEEcchhHHHHHHHhcCceEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhh
Q 038933 51 GFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYF 130 (347)
Q Consensus 51 aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F 130 (347)
|||.|++..+|+.|++... ....+.+.+..| +..+-|.-.||..+..+..+|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~A------------------------PeP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPA------------------------PEPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeC------------------------CCcccccccccCCChHHHHHHHHH
Confidence 7999999999999998533 112233344444 223456778887777776676665
Q ss_pred hc
Q 038933 131 ES 132 (347)
Q Consensus 131 ~~ 132 (347)
..
T Consensus 56 ~~ 57 (325)
T PF02714_consen 56 VN 57 (325)
T ss_pred HH
Confidence 54
No 231
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=51.37 E-value=1.3e+02 Score=29.59 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.7
Q ss_pred eeEEEE
Q 038933 151 RGFGFI 156 (347)
Q Consensus 151 ~G~afV 156 (347)
+|.|++
T Consensus 342 ~G~ai~ 347 (456)
T PRK10590 342 TGEALS 347 (456)
T ss_pred CeeEEE
Confidence 345543
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=50.33 E-value=37 Score=31.03 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=35.2
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCcee-EeecccccCCCCCceeEEEEEEcCh
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTV-TDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
..-|+|+||+.++...||+..+.+.+-+ .++.+ ..+.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 3459999999999999999999876533 33433 23456899999764
No 233
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=47.71 E-value=27 Score=26.10 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=24.3
Q ss_pred EEEEEcChHHHHHHHHh--CCceeCCeEEEEEe
Q 038933 154 GFITFDSEDAANNVLQT--RFHKLKYKMVEVKR 184 (347)
Q Consensus 154 afV~F~~~e~a~~Al~~--~~~~i~g~~i~v~~ 184 (347)
|.|+|.+...|++.+++ +...+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999987 44557777666543
No 234
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.09 E-value=8.6 Score=36.71 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCCeEEEcCCCCCCcHH--------HHHHHhcc--CCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh
Q 038933 5 SLRKLFVGGVSRETNEE--------TLREYFSQ--YGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~--------~L~~~F~~--~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~ 67 (347)
..|.+|+.+++..-+.+ ++...|.. .+++..|.+.++.....++|..|++|.....+++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 34667777777765544 99999998 67888899999877788899999999999999999864
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.47 E-value=21 Score=28.14 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=30.5
Q ss_pred eEEEcCCCCC---------CcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchh-HHHHHHH
Q 038933 8 KLFVGGVSRE---------TNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKIS-MAEDALQ 66 (347)
Q Consensus 8 ~l~V~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~-~a~~Al~ 66 (347)
++.|-|+|.. ++.++|++.|+.|.++. ++.+.++. -..|++.|+|.+.- --..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4556677543 46679999999998874 66666652 56789999996544 3444444
No 236
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=44.15 E-value=44 Score=23.75 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHhhhcCc-eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCC
Q 038933 124 EEFKSYFESFG-TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 124 e~L~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~ 187 (347)
++|++.|...| ++..+.-+..+++..+--.-||+.....+-...+ +-..++++.|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il--~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEIL--NIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceE--eehhhCCeeEEEecCcc
Confidence 46788888877 7888888888777777777888886653322221 34668899988886543
No 237
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=43.03 E-value=1.7e+02 Score=23.14 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHhhhc---CceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 117 LPLDIKEEEFKSYFES---FGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 117 Lp~~~t~e~L~~~F~~---~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
-|+.+|-.+|+++|+. |--|++=.+.+|--...+-..||.-|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 4778999999999974 555666566666433344557999887653
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.87 E-value=30 Score=27.30 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=26.4
Q ss_pred CCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcC-hHHHHHHHH
Q 038933 121 IKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDS-EDAANNVLQ 169 (347)
Q Consensus 121 ~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~-~e~a~~Al~ 169 (347)
.+.++|++.|+.|.+++ ++.+.++ .-.+|++.|+|.. ..-...|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35588999999997764 5555554 3678899999965 344444443
No 239
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.53 E-value=43 Score=30.81 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccC-------CCCCceeEEEEEEcChHHHHH
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDK-------ETGRPRGFGFITFDSEDAANN 166 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~-------~~~~~~G~afV~F~~~e~a~~ 166 (347)
.-.++.|.+.|+..+++--.+...|.+||+|++|.++.+. +..+...-..+-|-+.+.+..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 3457789999999999999999999999999999999765 112334467888888776543
No 240
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=37.25 E-value=1e+02 Score=25.33 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhcc-CC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh
Q 038933 8 KLFVGGVSRETNEETLREYFSQ-YG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~ 67 (347)
+-|+--....++..+|++.+++ |+ .|..|..+..+. |. -=|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHh
Confidence 3445556778999999999987 55 567777666542 22 2599999887776655544
No 241
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=32.90 E-value=1.9e+02 Score=20.86 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=42.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhcc-------CCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 8 KLFVGGVSRETNEETLREYFSQ-------YGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~-------~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
-|-.++||..+|.++|.+.-.+ +..|.-++-.-+... .|-||+.+=.|++.+.++-++-+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHHcC
Confidence 3567889999999999887654 334555554444322 35688888899999988877643
No 242
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=29.84 E-value=1.5e+02 Score=23.50 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCcHHHHHHHhccC-----CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHH
Q 038933 17 ETNEETLREYFSQY-----GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDA 64 (347)
Q Consensus 17 ~~te~~L~~~F~~~-----G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~A 64 (347)
+++.+||++-+++. ..|.-..+...-..|++.|||.| |.+.+.|.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 57899999988753 12222233334456889999988 6777666554
No 243
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.41 E-value=1.7e+02 Score=19.37 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=41.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcch----hHHHHHHHhc
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKI----SMAEDALQHK 68 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~----~~a~~Al~~~ 68 (347)
|+.|.||.-.-....|++.+.+.-.|.++.+-... +.+-|+|... ++..++++..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 57788888888889999999999888888776654 3688888654 4566666654
No 244
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.77 E-value=54 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCCC------------CcHHHHHHHhccCCCeEEEEEEe
Q 038933 5 SLRKLFVGGVSRE------------TNEETLREYFSQYGTVEETLIIR 40 (347)
Q Consensus 5 ~~r~l~V~nLp~~------------~te~~L~~~F~~~G~v~~v~i~~ 40 (347)
-.-|||+.+||-. -+++-|+..|+.||.|..|.|..
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3468999999853 37889999999999998887754
No 245
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.56 E-value=95 Score=29.67 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=46.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCC-CeEEEEEEecCCC--CCcceEEEEEEcchhHHHHHHHhcC
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYG-TVEETLIIRSRLT--GHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~t--g~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
+......|.|+.||+..++++|.+-...+- .|....+...... ..-.+.|||.|..+++........+
T Consensus 3 ~~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~ 73 (376)
T KOG1295|consen 3 KKEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFD 73 (376)
T ss_pred ccccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCC
Confidence 455678899999999999999998877663 2333333322111 0114679999999999777766654
No 246
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=28.26 E-value=1.7e+02 Score=21.83 Aligned_cols=44 Identities=14% Similarity=-0.007 Sum_probs=31.8
Q ss_pred HHHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh
Q 038933 20 EETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67 (347)
Q Consensus 20 e~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~ 67 (347)
.+.++++++++| ++.++.+...+ .--...+++.|.+.|.++.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHH
Confidence 345677777775 78888888644 335788899999988877644
No 247
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.10 E-value=27 Score=33.48 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=50.2
Q ss_pred cceEEEcCCCCCCCHH--------HHHHhhhc--CceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH
Q 038933 109 TKKIFVGGLPLDIKEE--------EFKSYFES--FGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ 169 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e--------~L~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~ 169 (347)
-+.+|+.+.+...+.+ ++...|.. ++.+..+...++.....++|..|++|...+.+++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4557777777665544 99999988 7788889888887678889999999999999999984
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.97 E-value=43 Score=29.77 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=28.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEE
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEE 35 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~ 35 (347)
...++||+-|+|..+|++-|.++.+++|-++.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 45688999999999999999999999986543
No 249
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.39 E-value=98 Score=26.47 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=49.7
Q ss_pred ceEEEcCCCCCCCH-----HHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCe-EEEE
Q 038933 110 KKIFVGGLPLDIKE-----EEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYK-MVEV 182 (347)
Q Consensus 110 ~~l~V~nLp~~~t~-----e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~-~i~v 182 (347)
..+.+.+++..+.. .....+|.+|-+.....+++. .+..-|-|.+.+.|..|..+ +...|.|+ .+.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 34555666655332 234456666766666666644 33667899999999999876 77888888 7777
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
..+.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776543
No 250
>PF14893 PNMA: PNMA
Probab=27.04 E-value=44 Score=31.58 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhcc
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQ 29 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~ 29 (347)
+-...|.|.|.+||.+|++++|++.+..
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 3456788999999999999999998763
No 251
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=27.03 E-value=1.8e+02 Score=25.75 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=9.7
Q ss_pred EEEEEEcChHHHHH
Q 038933 153 FGFITFDSEDAANN 166 (347)
Q Consensus 153 ~afV~F~~~e~a~~ 166 (347)
|+|=+|...+-+.+
T Consensus 144 YGFnEfTW~eYc~~ 157 (266)
T COG5213 144 YGFNEFTWKEYCHM 157 (266)
T ss_pred ccchhhHHHHHHHH
Confidence 78888877665544
No 252
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.61 E-value=94 Score=22.77 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=22.5
Q ss_pred cceEEEEEEcchhHHHHHHHhcCceEeC
Q 038933 47 GRGFGFVIFTKISMAEDALQHKHHVILG 74 (347)
Q Consensus 47 ~kG~aFVeF~~~~~a~~Al~~~~~~~~g 74 (347)
.+||-|||=.+++++..|++...+....
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceeec
Confidence 5689999999999999999987644433
No 253
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.82 E-value=68 Score=29.84 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=23.3
Q ss_pred EEEEEcChHHHHHHHHhCCceeCCeEEEEEecCCCC
Q 038933 154 GFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 154 afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~~~ 189 (347)
|||+|++.++|..|++... ....+.+.+..|.+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeCCCcc
Confidence 7999999999999998521 1112445666665443
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=24.96 E-value=11 Score=37.41 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~ 67 (347)
.++|+++|++++++-++|..++..+--+..+-+.............+|.|+---....|+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~a 292 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWA 292 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHH
Confidence 45789999999999999999999887666666655554556667888999655444444433
No 255
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=24.17 E-value=56 Score=27.85 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=42.0
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCC-CCceeEEEEEEcChHHHHHHHHhCCceeCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKET-GRPRGFGFITFDSEDAANNVLQTRFHKLKY 177 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~F~~~e~a~~Al~~~~~~i~g 177 (347)
.+++|.. +.+...++|.++-+ |.+.++.+-+.... -..+|-.||+|.+.+.|.+.++.+......
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e 176 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAE 176 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccc
Confidence 3455554 44444456666555 67888776654331 256888999999999999988764444333
No 256
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=23.87 E-value=49 Score=28.24 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=48.0
Q ss_pred CeEEEcCCCCCC-----cHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCe-Eeee
Q 038933 7 RKLFVGGVSRET-----NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGK-EVEV 79 (347)
Q Consensus 7 r~l~V~nLp~~~-----te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr-~i~v 79 (347)
.++.+.+++..+ ......++|.+|.+..-.++++.. +..-|.|.+++.|..|..+++ ..+.|+ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 346666776654 333455677777766555555432 466788999999999988765 678877 6666
Q ss_pred eeccc
Q 038933 80 KKAIP 84 (347)
Q Consensus 80 ~~a~~ 84 (347)
..+..
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 66644
No 257
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=23.51 E-value=27 Score=35.38 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=5.4
Q ss_pred EEcchhHHHHHHH
Q 038933 54 IFTKISMAEDALQ 66 (347)
Q Consensus 54 eF~~~~~a~~Al~ 66 (347)
.|...|..--++.
T Consensus 329 ~fs~vEcLL~afh 341 (556)
T PF05918_consen 329 QFSYVECLLYAFH 341 (556)
T ss_dssp -HHHHHHHHHHHH
T ss_pred cchHhhHHHHHHH
Confidence 3444444444443
No 258
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.43 E-value=2.7e+02 Score=19.50 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTK 57 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~ 57 (347)
..+++|.++.-.-....+++.++....|.++.+-... +-++|+|.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcC
Confidence 3568888888888888999999999889888888765 459999988
No 259
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.44 E-value=2.9e+02 Score=20.85 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=34.1
Q ss_pred CCCCCcHHHHHHHhccC--------CCeEEEEEEecC-----CCCCcce-EEEEEEcchhHHHHHHHh
Q 038933 14 VSRETNEETLREYFSQY--------GTVEETLIIRSR-----LTGHGRG-FGFVIFTKISMAEDALQH 67 (347)
Q Consensus 14 Lp~~~te~~L~~~F~~~--------G~v~~v~i~~~~-----~tg~~kG-~aFVeF~~~~~a~~Al~~ 67 (347)
|.++.+++++.++.+++ |.|..+.-.-.+ -.+..+| |.++.|.-..++-+.++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 45677777777665544 466655433211 1344555 688899988888777776
No 260
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=21.97 E-value=3.5e+02 Score=20.29 Aligned_cols=7 Identities=14% Similarity=0.468 Sum_probs=3.0
Q ss_pred HHHHhhh
Q 038933 125 EFKSYFE 131 (347)
Q Consensus 125 ~L~~~F~ 131 (347)
.|.++|-
T Consensus 20 ~I~d~Fw 26 (91)
T PF10961_consen 20 RITDFFW 26 (91)
T ss_pred HHHHHHH
Confidence 3444443
No 261
>PRK11901 hypothetical protein; Reviewed
Probab=21.94 E-value=1.7e+02 Score=27.54 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=36.9
Q ss_pred CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEE--EEcchhHHHHHHHhcCc
Q 038933 17 ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFV--IFTKISMAEDALQHKHH 70 (347)
Q Consensus 17 ~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFV--eF~~~~~a~~Al~~~~~ 70 (347)
.-.++.|..|..+++ +..+++......|+.- |..| .|.+.++|+.|++.+..
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 356888888888775 4556777655455543 4333 48999999999998764
No 262
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.43 E-value=2.9e+02 Score=19.14 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=32.4
Q ss_pred cHHHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcc---hhHHHHHHHhcC
Q 038933 19 NEETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTK---ISMAEDALQHKH 69 (347)
Q Consensus 19 te~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~---~~~a~~Al~~~~ 69 (347)
.-.++.+.|+++| .+..|.-.+.+ .....-.-||++.. ....+++++.+.
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 4668888999886 67777555543 22333467888874 556667776643
No 263
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=20.97 E-value=2.9e+02 Score=28.63 Aligned_cols=7 Identities=0% Similarity=-0.031 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 038933 163 AANNVLQ 169 (347)
Q Consensus 163 ~a~~Al~ 169 (347)
...-||.
T Consensus 503 ~~~~~i~ 509 (629)
T PRK11634 503 HIVGAIA 509 (629)
T ss_pred HHHHHHH
Confidence 3333443
No 264
>CHL00030 rpl23 ribosomal protein L23
Probab=20.18 E-value=2.1e+02 Score=21.65 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=26.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhcc-CC-CeEEEEEEecC
Q 038933 8 KLFVGGVSRETNEETLREYFSQ-YG-TVEETLIIRSR 42 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~ 42 (347)
..|+--.+.+++..+|++.++. |+ .|..|..+.-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 4566677889999999999987 45 56777666543
Done!