Query 038933
Match_columns 347
No_of_seqs 332 out of 2857
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:23:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 7.4E-37 2.5E-41 265.0 21.2 179 2-192 9-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 2.4E-35 8.2E-40 259.9 16.6 169 4-190 13-183 (213)
3 2cjk_A Nuclear polyadenylated 100.0 1.5E-35 5.2E-40 250.3 14.0 166 5-189 2-167 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 4.9E-34 1.7E-38 240.2 20.5 164 7-187 1-166 (166)
5 1fxl_A Paraneoplastic encephal 100.0 3E-33 1E-37 235.6 20.2 163 5-185 1-167 (167)
6 1b7f_A Protein (SXL-lethal pro 100.0 2.1E-33 7.1E-38 237.2 18.9 163 5-185 2-168 (168)
7 2qfj_A FBP-interacting repress 100.0 3E-33 1E-37 245.9 18.2 180 5-191 27-208 (216)
8 3nmr_A Cugbp ELAV-like family 100.0 2.5E-32 8.7E-37 231.9 18.2 164 5-186 2-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 4.4E-31 1.5E-35 229.0 22.1 181 4-190 2-196 (198)
10 1fje_B Nucleolin RBD12, protei 100.0 2E-32 6.9E-37 233.1 13.3 165 2-188 9-174 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 1.9E-31 6.7E-36 226.1 19.1 159 4-186 2-172 (172)
12 3smz_A Protein raver-1, ribonu 100.0 2.1E-30 7.2E-35 237.8 21.4 171 4-190 93-266 (284)
13 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-30 3.9E-35 240.5 16.9 174 4-189 115-292 (292)
14 3tyt_A Heterogeneous nuclear r 100.0 4.4E-30 1.5E-34 224.8 17.7 175 4-185 2-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 1.8E-29 6.3E-34 231.2 21.2 177 2-186 5-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 2E-29 7E-34 224.4 17.6 176 3-188 31-228 (229)
17 3smz_A Protein raver-1, ribonu 100.0 6.8E-29 2.3E-33 227.7 20.3 155 4-189 20-176 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 4E-29 1.4E-33 230.2 18.1 160 3-190 38-199 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 1.8E-29 6.3E-34 219.2 14.1 174 5-188 2-197 (198)
20 3sde_A Paraspeckle component 1 100.0 9E-29 3.1E-33 224.5 18.1 157 3-190 19-181 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 8.4E-23 2.9E-27 171.1 16.1 149 35-191 2-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.4E-22 4.8E-27 160.8 10.2 111 3-125 2-113 (115)
23 2i2y_A Fusion protein consists 99.8 1.7E-20 6E-25 155.6 10.2 138 44-189 9-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.8 4.3E-20 1.5E-24 142.4 10.7 80 5-84 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.8 7E-21 2.4E-25 184.3 7.4 84 107-190 100-184 (437)
26 3q2s_C Cleavage and polyadenyl 99.8 4.1E-21 1.4E-25 170.5 4.6 82 108-189 67-151 (229)
27 2lxi_A RNA-binding protein 10; 99.8 2.2E-20 7.6E-25 141.7 6.3 83 6-88 1-86 (91)
28 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-19 5.2E-24 139.3 10.9 80 108-187 18-98 (99)
29 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.2E-19 7.5E-24 150.0 12.2 85 106-190 36-121 (156)
30 2lxi_A RNA-binding protein 10; 99.8 8.9E-20 3E-24 138.4 8.8 84 109-192 1-87 (91)
31 3s7r_A Heterogeneous nuclear r 99.8 4E-19 1.4E-23 133.4 11.0 81 2-82 7-87 (87)
32 3s8s_A Histone-lysine N-methyl 99.8 3.6E-19 1.2E-23 139.8 11.2 84 3-86 3-87 (110)
33 2lkz_A RNA-binding protein 5; 99.8 6.5E-20 2.2E-24 140.1 6.5 83 2-84 5-94 (95)
34 2dgs_A DAZ-associated protein 99.8 1.6E-18 5.4E-23 133.3 11.9 86 106-191 7-92 (99)
35 2rs2_A Musashi-1, RNA-binding 99.8 7.6E-19 2.6E-23 137.8 10.1 86 2-87 21-106 (109)
36 2dgo_A Cytotoxic granule-assoc 99.8 3.3E-18 1.1E-22 135.3 13.8 89 2-90 11-100 (115)
37 2cqd_A RNA-binding region cont 99.8 4.8E-18 1.6E-22 134.5 14.6 88 103-190 11-98 (116)
38 3s8s_A Histone-lysine N-methyl 99.8 1.7E-18 5.9E-23 136.0 11.4 84 107-190 4-88 (110)
39 2dgs_A DAZ-associated protein 99.8 1.4E-18 4.9E-23 133.6 10.7 87 2-88 6-92 (99)
40 2cqd_A RNA-binding region cont 99.8 2.5E-18 8.6E-23 136.2 12.4 86 2-87 13-98 (116)
41 2cq0_A Eukaryotic translation 99.8 1.6E-18 5.4E-23 134.4 10.9 86 2-87 11-97 (103)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-18 4.9E-23 130.2 10.3 82 4-85 4-86 (87)
43 2dh8_A DAZ-associated protein 99.8 1.5E-18 5E-23 135.0 10.7 87 2-88 12-98 (105)
44 1whw_A Hypothetical protein ri 99.8 1.8E-18 6E-23 133.0 10.5 87 2-88 4-91 (99)
45 3s7r_A Heterogeneous nuclear r 99.8 2.7E-18 9.2E-23 128.8 11.2 81 105-185 7-87 (87)
46 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-17 3.8E-22 132.2 15.3 89 104-192 10-99 (115)
47 2dh8_A DAZ-associated protein 99.8 2.8E-18 9.4E-23 133.4 11.4 88 104-191 11-98 (105)
48 2dng_A Eukaryotic translation 99.8 5.6E-18 1.9E-22 131.2 13.1 86 104-190 10-95 (103)
49 3md1_A Nuclear and cytoplasmic 99.8 2.9E-18 9.8E-23 127.3 10.9 81 6-86 1-82 (83)
50 2cqg_A TDP-43, TAR DNA-binding 99.8 8E-18 2.7E-22 130.3 13.7 87 105-192 11-97 (103)
51 2lkz_A RNA-binding protein 5; 99.8 1.3E-18 4.4E-23 132.9 8.9 82 106-187 6-94 (95)
52 2cq0_A Eukaryotic translation 99.8 6.7E-18 2.3E-22 130.8 13.2 87 105-191 11-98 (103)
53 2cpz_A CUG triplet repeat RNA- 99.8 2.1E-18 7.2E-23 136.4 10.4 87 2-88 21-108 (115)
54 1whw_A Hypothetical protein ri 99.8 6.3E-18 2.1E-22 129.9 12.7 85 107-191 6-91 (99)
55 2lea_A Serine/arginine-rich sp 99.8 6.4E-19 2.2E-23 143.6 7.5 123 50-191 6-130 (135)
56 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.1E-18 7.3E-23 145.3 10.9 139 53-191 11-155 (165)
57 2cqg_A TDP-43, TAR DNA-binding 99.8 5.4E-18 1.8E-22 131.3 12.2 86 2-88 11-96 (103)
58 1wi8_A EIF-4B, eukaryotic tran 99.8 6.4E-18 2.2E-22 131.2 12.6 86 105-191 11-97 (104)
59 2do4_A Squamous cell carcinoma 99.8 3E-18 1E-22 132.0 10.6 83 3-86 14-97 (100)
60 1u6f_A Tcubp1, RNA-binding pro 99.8 1.2E-17 4E-22 136.6 14.7 87 104-190 37-124 (139)
61 2cqc_A Arginine/serine-rich sp 99.8 3E-18 1E-22 130.6 10.4 83 2-84 11-94 (95)
62 1x4h_A RNA-binding protein 28; 99.8 7.8E-18 2.7E-22 132.1 13.1 88 105-192 11-105 (111)
63 2fy1_A RNA-binding motif prote 99.8 3.2E-18 1.1E-22 135.7 10.8 87 1-88 2-89 (116)
64 2dnz_A Probable RNA-binding pr 99.8 2.3E-18 7.9E-23 131.3 9.6 85 3-87 2-87 (95)
65 2dnm_A SRP46 splicing factor; 99.8 4.6E-18 1.6E-22 131.7 11.3 88 104-191 8-96 (103)
66 1x5u_A Splicing factor 3B subu 99.8 2.2E-18 7.5E-23 133.9 9.3 87 2-88 11-98 (105)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-18 9.6E-23 128.0 9.4 80 3-82 4-84 (85)
68 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.6E-18 1.9E-22 130.9 11.4 87 105-191 8-95 (102)
69 1x5u_A Splicing factor 3B subu 99.8 7.2E-18 2.5E-22 131.0 12.1 88 104-191 10-98 (105)
70 2dnm_A SRP46 splicing factor; 99.8 2.1E-18 7.2E-23 133.6 8.9 86 2-87 9-95 (103)
71 2dng_A Eukaryotic translation 99.8 6.7E-18 2.3E-22 130.8 11.8 85 2-87 11-95 (103)
72 1s79_A Lupus LA protein; RRM, 99.8 1.2E-18 4.1E-23 135.2 7.4 83 2-85 7-89 (103)
73 1x5t_A Splicing factor 3B subu 99.8 2.3E-18 8E-23 131.5 8.9 85 3-87 2-88 (96)
74 1sjq_A Polypyrimidine tract-bi 99.8 2.9E-18 9.8E-23 132.7 9.2 81 3-89 13-96 (105)
75 2e5h_A Zinc finger CCHC-type a 99.8 4.2E-18 1.4E-22 129.6 10.1 80 3-82 13-93 (94)
76 2x1f_A MRNA 3'-END-processing 99.8 4E-18 1.4E-22 130.3 9.9 84 5-88 1-85 (96)
77 2cpf_A RNA binding motif prote 99.8 4.1E-18 1.4E-22 130.7 10.0 85 3-87 2-90 (98)
78 1wi8_A EIF-4B, eukaryotic tran 99.8 5.8E-18 2E-22 131.4 10.9 86 2-88 11-97 (104)
79 2dnz_A Probable RNA-binding pr 99.8 6.3E-18 2.1E-22 128.8 10.9 84 107-190 3-87 (95)
80 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.8E-18 2E-22 126.8 10.5 82 107-188 4-86 (87)
81 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-18 5.3E-23 134.3 7.6 83 2-86 11-93 (102)
82 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.7E-18 9.3E-23 132.7 8.9 86 3-88 9-95 (102)
83 1x4h_A RNA-binding protein 28; 99.7 4E-18 1.4E-22 133.8 10.0 87 2-88 11-104 (111)
84 3md1_A Nuclear and cytoplasmic 99.7 8.8E-18 3E-22 124.7 11.1 80 110-189 2-82 (83)
85 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-17 4.2E-22 132.0 12.5 87 105-191 21-108 (115)
86 2cqc_A Arginine/serine-rich sp 99.7 1.4E-17 4.8E-22 126.8 12.5 84 104-187 10-94 (95)
87 1x5t_A Splicing factor 3B subu 99.7 6.8E-18 2.3E-22 128.9 10.7 85 107-191 3-89 (96)
88 3p5t_L Cleavage and polyadenyl 99.7 7.6E-19 2.6E-23 132.8 5.2 80 7-86 2-84 (90)
89 1wg5_A Heterogeneous nuclear r 99.7 3.2E-18 1.1E-22 133.0 8.8 84 3-87 12-96 (104)
90 1wg5_A Heterogeneous nuclear r 99.7 8.8E-18 3E-22 130.5 11.4 85 105-190 11-96 (104)
91 3ucg_A Polyadenylate-binding p 99.7 7.6E-18 2.6E-22 126.7 10.6 82 4-85 4-85 (89)
92 2d9p_A Polyadenylate-binding p 99.7 5.1E-18 1.8E-22 131.4 9.8 85 2-88 11-96 (103)
93 1p27_B RNA-binding protein 8A; 99.7 4.6E-18 1.6E-22 132.3 9.6 83 4-86 21-104 (106)
94 2hgn_A Heterogeneous nuclear r 99.7 3.4E-19 1.1E-23 145.6 3.2 124 49-190 2-125 (139)
95 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-18 5.4E-23 137.1 6.9 105 2-135 4-109 (115)
96 1wez_A HnRNP H', FTP-3, hetero 99.7 5E-18 1.7E-22 131.5 9.4 83 105-189 11-93 (102)
97 2do4_A Squamous cell carcinoma 99.7 2.2E-17 7.5E-22 127.1 12.9 85 105-190 13-98 (100)
98 2hvz_A Splicing factor, argini 99.7 2.1E-18 7.1E-23 133.2 7.1 100 7-119 1-101 (101)
99 2cpy_A RNA-binding protein 12; 99.7 2E-18 6.9E-23 136.4 7.0 85 3-88 12-97 (114)
100 2ywk_A Putative RNA-binding pr 99.7 8.6E-18 2.9E-22 128.1 10.3 81 2-83 12-93 (95)
101 1x4b_A Heterogeneous nuclear r 99.7 6.8E-18 2.3E-22 133.7 10.0 86 106-191 24-109 (116)
102 2dhg_A TRNA selenocysteine ass 99.7 7.4E-18 2.5E-22 130.7 10.0 87 2-89 5-94 (104)
103 2cpy_A RNA-binding protein 12; 99.7 1.6E-18 5.6E-23 137.0 6.4 85 105-190 11-96 (114)
104 2div_A TRNA selenocysteine ass 99.7 7.4E-18 2.5E-22 129.5 9.9 83 3-85 6-94 (99)
105 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-18 5E-23 127.0 5.7 76 7-82 1-76 (77)
106 1x5s_A Cold-inducible RNA-bind 99.7 2.8E-18 9.6E-23 132.6 7.6 85 3-87 9-94 (102)
107 2cph_A RNA binding motif prote 99.7 4.9E-18 1.7E-22 132.4 8.9 87 2-88 11-100 (107)
108 2x1f_A MRNA 3'-END-processing 99.7 1.4E-17 4.8E-22 127.3 11.2 84 108-191 1-85 (96)
109 2fy1_A RNA-binding motif prote 99.7 1.2E-17 4E-22 132.5 11.1 83 107-190 5-88 (116)
110 2khc_A Testis-specific RNP-typ 99.7 6.6E-18 2.2E-22 134.1 9.7 81 2-82 36-117 (118)
111 2rs2_A Musashi-1, RNA-binding 99.7 9E-18 3.1E-22 131.6 10.3 87 105-191 21-107 (109)
112 2do0_A HnRNP M, heterogeneous 99.7 3.1E-17 1.1E-21 129.3 13.4 83 3-86 12-95 (114)
113 1oo0_B CG8781-PA, drosophila Y 99.7 8.7E-18 3E-22 131.7 10.0 84 3-86 23-107 (110)
114 2dgp_A Bruno-like 4, RNA bindi 99.7 1.2E-17 4.2E-22 129.9 10.7 87 104-190 8-98 (106)
115 2dnh_A Bruno-like 5, RNA bindi 99.7 1E-17 3.5E-22 130.1 10.2 85 3-88 12-100 (105)
116 2e5h_A Zinc finger CCHC-type a 99.7 2E-17 6.9E-22 125.8 11.5 83 104-186 11-94 (94)
117 3ex7_B RNA-binding protein 8A; 99.7 7.2E-18 2.5E-22 135.5 9.5 86 105-190 18-104 (126)
118 2jrs_A RNA-binding protein 39; 99.7 6.3E-18 2.2E-22 132.3 8.9 84 2-85 22-106 (108)
119 2dgp_A Bruno-like 4, RNA bindi 99.7 4.1E-18 1.4E-22 132.7 7.8 86 2-87 9-98 (106)
120 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.4E-17 4.6E-22 124.2 10.4 80 107-186 5-85 (85)
121 2cph_A RNA binding motif prote 99.7 2.4E-17 8.2E-22 128.4 12.2 88 104-191 10-100 (107)
122 2dhg_A TRNA selenocysteine ass 99.7 9.2E-18 3.1E-22 130.2 9.7 87 105-192 5-94 (104)
123 2do0_A HnRNP M, heterogeneous 99.7 7.5E-17 2.6E-21 127.1 15.1 85 105-190 11-96 (114)
124 3ns6_A Eukaryotic translation 99.7 1.5E-18 5.3E-23 133.8 5.2 84 3-86 3-94 (100)
125 2cpf_A RNA binding motif prote 99.7 1.5E-17 5.2E-22 127.5 10.7 85 107-191 3-91 (98)
126 1x5s_A Cold-inducible RNA-bind 99.7 8.6E-18 2.9E-22 129.9 9.4 86 105-190 8-94 (102)
127 1x4b_A Heterogeneous nuclear r 99.7 8.8E-18 3E-22 133.0 9.7 84 5-88 26-109 (116)
128 2cpe_A RNA-binding protein EWS 99.7 7.6E-18 2.6E-22 132.7 9.2 87 2-88 11-106 (113)
129 2kxn_B Transformer-2 protein h 99.7 4.6E-18 1.6E-22 137.4 8.1 85 2-86 42-127 (129)
130 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-17 5.5E-22 135.8 11.4 87 2-88 38-125 (139)
131 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.2E-17 7.5E-22 127.8 11.5 85 2-88 11-96 (103)
132 2hgm_A HNRPF protein, heteroge 99.7 2.6E-18 9E-23 137.8 6.3 82 3-86 39-122 (126)
133 2d9p_A Polyadenylate-binding p 99.7 2.5E-17 8.7E-22 127.5 11.8 85 105-191 11-96 (103)
134 2cpe_A RNA-binding protein EWS 99.7 2.8E-17 9.7E-22 129.4 12.2 87 105-191 11-106 (113)
135 3n9u_C Cleavage and polyadenyl 99.7 9.7E-18 3.3E-22 139.9 10.0 81 5-85 54-137 (156)
136 2la6_A RNA-binding protein FUS 99.7 8.6E-18 2.9E-22 129.2 8.9 81 2-82 9-98 (99)
137 2dgw_A Probable RNA-binding pr 99.7 1.6E-17 5.6E-22 125.6 10.3 83 2-86 6-88 (91)
138 2cq3_A RNA-binding protein 9; 99.7 3.3E-17 1.1E-21 126.9 12.2 85 2-88 11-96 (103)
139 3ucg_A Polyadenylate-binding p 99.7 1.5E-17 5.3E-22 125.0 10.0 81 108-188 5-85 (89)
140 2cq4_A RNA binding motif prote 99.7 4.6E-18 1.6E-22 134.2 7.4 83 4-86 23-105 (114)
141 2db1_A Heterogeneous nuclear r 99.7 4.8E-18 1.6E-22 135.1 7.4 83 3-86 14-99 (118)
142 2mss_A Protein (musashi1); RNA 99.7 2.5E-18 8.5E-23 125.2 5.1 75 8-82 1-75 (75)
143 2mss_A Protein (musashi1); RNA 99.7 4.8E-18 1.7E-22 123.7 6.5 75 111-185 1-75 (75)
144 2dnn_A RNA-binding protein 12; 99.7 1.8E-17 6.2E-22 129.7 10.2 82 106-189 13-94 (109)
145 4f25_A Polyadenylate-binding p 99.7 2E-17 6.9E-22 130.9 10.6 80 109-190 5-85 (115)
146 2ek1_A RNA-binding protein 12; 99.7 5.5E-18 1.9E-22 129.2 7.0 80 4-83 13-93 (95)
147 2dha_A FLJ20171 protein; RRM d 99.7 1.9E-18 6.5E-23 138.2 4.5 84 3-87 20-107 (123)
148 4a8x_A RNA-binding protein wit 99.7 1.2E-17 4.1E-22 125.3 8.7 82 4-85 2-85 (88)
149 3ulh_A THO complex subunit 4; 99.7 2.3E-17 7.8E-22 128.6 10.6 80 3-83 26-106 (107)
150 1x4e_A RNA binding motif, sing 99.7 4.6E-18 1.6E-22 126.9 6.2 81 3-83 2-83 (85)
151 3p5t_L Cleavage and polyadenyl 99.7 2.6E-18 8.9E-23 129.8 4.9 82 110-191 2-86 (90)
152 3r27_A HnRNP L, heterogeneous 99.7 1.7E-17 6E-22 127.0 9.5 78 3-86 18-98 (100)
153 1iqt_A AUF1, heterogeneous nuc 99.7 2.3E-18 7.7E-23 125.4 4.4 75 8-82 1-75 (75)
154 2cqp_A RNA-binding protein 12; 99.7 8.4E-18 2.9E-22 128.9 7.8 82 3-84 12-94 (98)
155 2dnh_A Bruno-like 5, RNA bindi 99.7 4.2E-17 1.4E-21 126.6 11.9 85 106-191 12-100 (105)
156 1s79_A Lupus LA protein; RRM, 99.7 7.7E-18 2.6E-22 130.6 7.6 80 107-187 9-88 (103)
157 1oo0_B CG8781-PA, drosophila Y 99.7 3E-17 1E-21 128.7 11.0 86 105-190 22-108 (110)
158 2dnn_A RNA-binding protein 12; 99.7 6.1E-18 2.1E-22 132.4 7.0 80 5-86 15-94 (109)
159 2cq3_A RNA-binding protein 9; 99.7 9.1E-17 3.1E-21 124.3 13.5 87 104-192 10-97 (103)
160 2cqp_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 125.7 10.8 83 106-188 12-95 (98)
161 2khc_A Testis-specific RNP-typ 99.7 5.5E-17 1.9E-21 128.8 12.5 83 104-186 35-118 (118)
162 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.2E-17 2.8E-21 124.6 13.1 86 104-191 10-96 (103)
163 1p27_B RNA-binding protein 8A; 99.7 2.1E-17 7.3E-22 128.6 9.8 84 106-189 20-104 (106)
164 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.9E-17 1.3E-21 136.2 12.0 83 4-86 37-120 (156)
165 2hgl_A HNRPF protein, heteroge 99.7 4.7E-18 1.6E-22 138.3 6.1 83 3-86 41-126 (136)
166 2dis_A Unnamed protein product 99.7 1.9E-17 6.4E-22 129.5 9.3 86 3-88 5-95 (109)
167 1p1t_A Cleavage stimulation fa 99.7 4.9E-18 1.7E-22 131.7 5.9 85 4-88 6-91 (104)
168 2dgw_A Probable RNA-binding pr 99.7 4.5E-17 1.5E-21 123.1 11.0 83 106-190 7-89 (91)
169 1x4d_A Matrin 3; structural ge 99.7 1.8E-17 6.2E-22 127.9 8.9 78 3-86 12-93 (102)
170 2div_A TRNA selenocysteine ass 99.7 2.6E-17 8.8E-22 126.5 9.8 84 106-189 6-95 (99)
171 2jrs_A RNA-binding protein 39; 99.7 3.3E-17 1.1E-21 128.2 10.5 85 105-189 22-107 (108)
172 2m2b_A RNA-binding protein 10; 99.7 7.7E-18 2.6E-22 136.4 6.9 85 3-88 20-111 (131)
173 2la6_A RNA-binding protein FUS 99.7 3.5E-17 1.2E-21 125.8 10.2 83 104-186 8-99 (99)
174 2ywk_A Putative RNA-binding pr 99.7 4.7E-17 1.6E-21 124.0 10.8 82 105-187 12-94 (95)
175 3ns6_A Eukaryotic translation 99.7 7.7E-18 2.6E-22 129.9 6.4 82 108-189 5-94 (100)
176 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 132.0 7.4 85 106-190 22-106 (114)
177 2cq1_A PTB-like protein L; RRM 99.7 5.6E-17 1.9E-21 125.1 11.2 81 3-89 12-95 (101)
178 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.4E-18 2.5E-22 129.9 6.2 82 3-85 16-98 (100)
179 4a8x_A RNA-binding protein wit 99.7 3.4E-17 1.2E-21 122.8 9.7 82 108-189 3-86 (88)
180 2dgv_A HnRNP M, heterogeneous 99.7 3.5E-17 1.2E-21 123.9 9.8 82 3-86 5-87 (92)
181 2db1_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 133.0 7.3 83 106-189 14-99 (118)
182 3ex7_B RNA-binding protein 8A; 99.7 1.9E-17 6.5E-22 133.0 8.4 86 3-88 19-105 (126)
183 2ad9_A Polypyrimidine tract-bi 99.7 1.9E-17 6.4E-22 131.2 8.2 83 2-90 27-112 (119)
184 1x4a_A Splicing factor, argini 99.7 6.4E-17 2.2E-21 126.6 11.1 83 2-87 18-101 (109)
185 2ek1_A RNA-binding protein 12; 99.7 2.7E-17 9.1E-22 125.3 8.6 81 107-187 13-94 (95)
186 1iqt_A AUF1, heterogeneous nuc 99.7 7.3E-18 2.5E-22 122.7 5.1 75 111-185 1-75 (75)
187 2jwn_A Embryonic polyadenylate 99.7 4.8E-17 1.6E-21 130.3 10.3 83 107-189 34-116 (124)
188 2cq1_A PTB-like protein L; RRM 99.7 1.6E-16 5.5E-21 122.5 12.7 82 105-192 11-95 (101)
189 2kxn_B Transformer-2 protein h 99.7 2.5E-17 8.6E-22 133.0 8.4 86 104-189 41-127 (129)
190 2xs2_A Deleted in azoospermia- 99.7 2E-17 6.7E-22 127.9 7.5 83 3-87 6-88 (102)
191 2cpi_A CCR4-NOT transcription 99.7 3.3E-17 1.1E-21 128.8 8.8 84 3-86 12-102 (111)
192 1wex_A Hypothetical protein (r 99.7 4.3E-17 1.5E-21 126.5 9.3 80 3-88 12-94 (104)
193 2jwn_A Embryonic polyadenylate 99.7 4.4E-17 1.5E-21 130.5 9.6 81 5-85 35-115 (124)
194 2m2b_A RNA-binding protein 10; 99.7 3.9E-17 1.3E-21 132.3 9.2 86 104-190 18-110 (131)
195 1x4a_A Splicing factor, argini 99.7 1.9E-16 6.4E-21 123.9 12.8 84 104-190 17-101 (109)
196 2dgx_A KIAA0430 protein; RRM d 99.7 1E-16 3.5E-21 122.5 11.1 82 106-190 6-92 (96)
197 1x4c_A Splicing factor, argini 99.7 2.4E-16 8.2E-21 123.2 13.4 80 105-191 11-96 (108)
198 2hgl_A HNRPF protein, heteroge 99.7 1.2E-17 4.2E-22 135.8 6.2 84 105-189 40-126 (136)
199 2dgx_A KIAA0430 protein; RRM d 99.7 5.3E-17 1.8E-21 124.1 9.3 80 4-86 7-91 (96)
200 3ulh_A THO complex subunit 4; 99.7 1.1E-16 3.7E-21 124.7 11.1 81 105-186 25-106 (107)
201 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.9E-17 6.5E-22 127.6 6.7 84 105-189 15-99 (100)
202 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.9E-17 2.4E-21 131.9 10.3 80 3-82 60-140 (140)
203 1sjq_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 126.1 8.4 81 106-192 13-96 (105)
204 3n9u_C Cleavage and polyadenyl 99.7 4.9E-17 1.7E-21 135.6 9.4 82 108-189 54-138 (156)
205 1p1t_A Cleavage stimulation fa 99.7 2.4E-17 8.3E-22 127.7 6.9 86 106-191 5-91 (104)
206 2cpi_A CCR4-NOT transcription 99.7 1.8E-16 6E-21 124.6 11.7 85 106-190 12-103 (111)
207 2lmi_A GRSF-1, G-rich sequence 99.7 7.8E-18 2.7E-22 131.5 3.8 84 2-86 7-93 (107)
208 1wel_A RNA-binding protein 12; 99.7 8.8E-18 3E-22 134.7 4.2 84 3-86 22-105 (124)
209 2kt5_A RNA and export factor-b 99.7 8.2E-17 2.8E-21 129.0 9.8 83 4-87 33-116 (124)
210 1wel_A RNA-binding protein 12; 99.7 2.4E-17 8.3E-22 132.1 6.6 85 105-189 21-105 (124)
211 2kn4_A Immunoglobulin G-bindin 99.7 6.6E-17 2.3E-21 135.0 9.6 83 4-86 68-151 (158)
212 2lea_A Serine/arginine-rich sp 99.7 1.7E-17 5.9E-22 135.1 5.8 84 3-86 44-128 (135)
213 2fc9_A NCL protein; structure 99.7 3E-16 1E-20 120.9 12.6 82 105-190 11-93 (101)
214 2ki2_A SS-DNA binding protein 99.7 9.4E-18 3.2E-22 126.6 3.8 80 6-86 1-81 (90)
215 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-16 4.1E-21 120.9 10.0 83 106-190 5-88 (92)
216 2hgm_A HNRPF protein, heteroge 99.7 2.3E-17 7.8E-22 132.3 6.1 82 106-189 39-122 (126)
217 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.6E-17 8.9E-22 120.3 5.9 76 110-185 1-76 (77)
218 2dha_A FLJ20171 protein; RRM d 99.7 1.5E-17 5.1E-22 133.0 4.9 82 107-189 21-106 (123)
219 2fc9_A NCL protein; structure 99.7 1.1E-16 3.7E-21 123.4 9.3 81 3-87 12-93 (101)
220 2dis_A Unnamed protein product 99.7 1.8E-16 6.1E-21 123.9 10.7 85 107-191 6-95 (109)
221 2hgn_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 136.8 3.6 82 3-86 43-124 (139)
222 2dgu_A Heterogeneous nuclear r 99.7 4.4E-16 1.5E-20 120.5 12.7 79 106-192 8-87 (103)
223 2xs2_A Deleted in azoospermia- 99.7 5.6E-17 1.9E-21 125.3 7.6 84 106-191 6-89 (102)
224 2err_A Ataxin-2-binding protei 99.7 8.3E-17 2.8E-21 126.1 8.6 82 2-85 25-107 (109)
225 1x5o_A RNA binding motif, sing 99.7 1.1E-16 3.8E-21 126.2 9.4 81 3-84 22-111 (114)
226 1fj7_A Nucleolin RBD1, protein 99.7 3.1E-17 1.1E-21 126.5 5.8 83 107-190 15-97 (101)
227 1x4c_A Splicing factor, argini 99.7 4.7E-16 1.6E-20 121.5 12.6 78 4-88 13-96 (108)
228 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.2E-16 1.1E-20 127.9 12.2 83 103-185 57-140 (140)
229 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.7E-16 5.9E-21 133.6 10.8 85 4-88 70-155 (165)
230 2nlw_A Eukaryotic translation 99.7 1.2E-16 4E-21 124.3 8.9 80 5-86 14-101 (105)
231 3q2s_C Cleavage and polyadenyl 99.7 5.8E-17 2E-21 143.8 8.0 80 5-84 67-149 (229)
232 2fc8_A NCL protein; structure 99.7 4.4E-16 1.5E-20 120.1 12.0 84 104-190 10-94 (102)
233 2fc8_A NCL protein; structure 99.7 1.8E-16 6.3E-21 122.3 9.8 82 3-87 12-94 (102)
234 1x4e_A RNA binding motif, sing 99.7 2.3E-17 8E-22 123.0 4.4 79 107-185 3-82 (85)
235 2lmi_A GRSF-1, G-rich sequence 99.7 1.9E-17 6.6E-22 129.2 4.0 83 106-189 8-93 (107)
236 1wex_A Hypothetical protein (r 99.7 4.8E-16 1.6E-20 120.6 11.7 80 106-191 12-94 (104)
237 2kt5_A RNA and export factor-b 99.7 5.5E-16 1.9E-20 124.1 12.2 86 105-191 31-117 (124)
238 2dnq_A RNA-binding protein 4B; 99.7 2.5E-16 8.5E-21 118.8 9.2 78 3-88 5-83 (90)
239 1fj7_A Nucleolin RBD1, protein 99.7 1E-17 3.5E-22 129.3 1.4 83 3-86 14-96 (101)
240 2nlw_A Eukaryotic translation 99.7 4.2E-16 1.4E-20 121.1 10.5 82 107-190 13-102 (105)
241 2ki2_A SS-DNA binding protein 99.7 4.4E-17 1.5E-21 122.9 4.7 81 110-191 2-83 (90)
242 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-16 4.4E-21 125.2 7.4 80 2-85 24-105 (111)
243 2krb_A Eukaryotic translation 99.7 9.3E-17 3.2E-21 118.7 6.2 72 6-79 1-80 (81)
244 2err_A Ataxin-2-binding protei 99.7 3.4E-16 1.1E-20 122.6 9.7 84 104-189 24-108 (109)
245 1x4f_A Matrin 3; structural ge 99.7 7.3E-17 2.5E-21 126.4 5.9 79 3-87 22-104 (112)
246 1x4d_A Matrin 3; structural ge 99.7 8.3E-16 2.8E-20 118.6 11.6 78 107-190 13-94 (102)
247 1x4g_A Nucleolysin TIAR; struc 99.7 4.6E-16 1.6E-20 121.7 10.3 80 3-88 22-102 (109)
248 2ad9_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 123.9 9.5 81 106-192 28-111 (119)
249 2cpx_A Hypothetical protein FL 99.7 2.9E-16 9.9E-21 123.9 9.1 86 106-191 22-108 (115)
250 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-16 7.9E-21 116.9 7.9 73 5-83 6-79 (89)
251 2lcw_A RNA-binding protein FUS 99.5 8.5E-18 2.9E-22 133.1 0.0 87 2-88 3-98 (116)
252 2wbr_A GW182, gawky, LD47780P; 99.7 3E-16 1E-20 116.3 8.3 73 108-186 6-79 (89)
253 2dnq_A RNA-binding protein 4B; 99.7 6.9E-16 2.4E-20 116.3 10.4 78 106-191 5-83 (90)
254 2ytc_A PRE-mRNA-splicing facto 99.6 4.8E-16 1.7E-20 115.8 9.3 75 2-82 8-84 (85)
255 2e5g_A U6 snRNA-specific termi 99.6 1E-15 3.4E-20 116.4 11.1 80 3-87 5-84 (94)
256 2la4_A Nuclear and cytoplasmic 99.6 3.1E-16 1.1E-20 120.9 8.4 76 3-84 24-100 (101)
257 2dgu_A Heterogeneous nuclear r 99.6 9.3E-16 3.2E-20 118.7 11.1 80 4-91 9-89 (103)
258 2dgt_A RNA-binding protein 30; 99.6 1.6E-15 5.5E-20 114.8 12.1 78 105-190 6-84 (92)
259 3r27_A HnRNP L, heterogeneous 99.6 1.2E-15 4E-20 116.8 11.3 79 105-189 17-98 (100)
260 1nu4_A U1A RNA binding domain; 99.6 1.8E-16 6E-21 121.2 6.7 82 2-86 4-90 (97)
261 1x5o_A RNA binding motif, sing 99.6 9.7E-16 3.3E-20 120.7 11.0 82 106-188 22-112 (114)
262 1why_A Hypothetical protein ri 99.6 4.2E-16 1.4E-20 119.2 8.6 78 3-86 14-94 (97)
263 2dnl_A Cytoplasmic polyadenyla 99.6 5.3E-16 1.8E-20 122.4 9.4 80 3-84 5-87 (114)
264 2jvr_A Nucleolar protein 3; RN 99.6 4.2E-16 1.4E-20 122.2 8.7 78 107-188 26-105 (111)
265 3d2w_A TAR DNA-binding protein 99.6 3.8E-16 1.3E-20 117.7 8.0 78 3-86 8-85 (89)
266 1fjc_A Nucleolin RBD2, protein 99.6 2.8E-16 9.5E-21 119.9 7.3 79 3-86 13-92 (96)
267 1l3k_A Heterogeneous nuclear r 99.6 6.9E-16 2.3E-20 132.7 10.7 85 5-89 103-187 (196)
268 2cpj_A Non-POU domain-containi 99.6 4.7E-16 1.6E-20 119.4 8.6 79 3-87 12-91 (99)
269 1wf1_A RNA-binding protein RAL 99.6 7.3E-16 2.5E-20 120.7 9.7 75 107-189 25-101 (110)
270 2dgt_A RNA-binding protein 30; 99.6 8.9E-16 3E-20 116.2 9.7 78 2-87 6-84 (92)
271 2lcw_A RNA-binding protein FUS 99.4 1.6E-17 5.5E-22 131.6 0.0 85 106-190 4-97 (116)
272 2cpx_A Hypothetical protein FL 99.6 7.7E-17 2.6E-21 127.3 3.9 85 4-88 23-108 (115)
273 2e5g_A U6 snRNA-specific termi 99.6 1.2E-15 4.1E-20 116.0 10.3 80 107-191 6-85 (94)
274 2dnp_A RNA-binding protein 14; 99.6 9.4E-16 3.2E-20 115.6 9.6 77 2-86 5-82 (90)
275 2a3j_A U1 small nuclear ribonu 99.6 4.8E-16 1.7E-20 124.9 8.3 83 3-88 26-113 (127)
276 2e5j_A Methenyltetrahydrofolat 99.6 3.2E-16 1.1E-20 120.0 6.9 79 3-86 16-95 (97)
277 2jvo_A Nucleolar protein 3; nu 99.6 7.5E-16 2.6E-20 120.4 9.1 76 3-86 28-104 (108)
278 1x4g_A Nucleolysin TIAR; struc 99.6 1.5E-15 5.1E-20 118.8 10.5 80 106-191 22-102 (109)
279 1fjc_A Nucleolin RBD2, protein 99.6 1.8E-15 6.3E-20 115.3 10.8 80 106-190 13-93 (96)
280 1why_A Hypothetical protein ri 99.6 1.9E-15 6.5E-20 115.6 10.7 79 106-190 14-95 (97)
281 2xnq_A Nuclear polyadenylated 99.6 1.6E-15 5.4E-20 116.1 10.2 75 3-85 19-95 (97)
282 2cpj_A Non-POU domain-containi 99.6 1.5E-15 5.1E-20 116.6 10.1 80 105-190 11-91 (99)
283 2dnp_A RNA-binding protein 14; 99.6 2.2E-15 7.6E-20 113.5 10.7 77 106-190 6-83 (90)
284 2krb_A Eukaryotic translation 99.6 2.6E-16 9E-21 116.3 5.3 71 110-182 2-80 (81)
285 2voo_A Lupus LA protein; RNA-b 99.6 1.4E-15 4.6E-20 131.4 10.6 80 5-85 108-187 (193)
286 3d2w_A TAR DNA-binding protein 99.6 9.4E-16 3.2E-20 115.5 8.3 79 106-190 8-86 (89)
287 4f02_A Polyadenylate-binding p 99.6 1.8E-15 6.3E-20 132.5 11.2 84 106-189 12-96 (213)
288 1x4f_A Matrin 3; structural ge 99.6 1.7E-15 5.8E-20 118.6 9.7 80 106-191 22-105 (112)
289 2f3j_A RNA and export factor b 99.6 7E-16 2.4E-20 131.3 8.0 81 4-85 86-167 (177)
290 2cqh_A IGF-II mRNA-binding pro 99.6 1.3E-15 4.3E-20 115.6 8.6 77 107-190 6-85 (93)
291 2ytc_A PRE-mRNA-splicing facto 99.6 2.8E-15 9.5E-20 111.6 10.2 77 104-186 7-85 (85)
292 2a3j_A U1 small nuclear ribonu 99.6 1.3E-15 4.3E-20 122.5 8.8 82 106-190 26-112 (127)
293 2e5j_A Methenyltetrahydrofolat 99.6 1.8E-15 6.1E-20 115.7 9.2 81 105-190 15-96 (97)
294 1wf0_A TDP-43, TAR DNA-binding 99.6 4.8E-16 1.6E-20 116.7 5.9 78 4-87 3-80 (88)
295 2hvz_A Splicing factor, argini 99.6 8.8E-16 3E-20 118.3 7.5 76 110-190 1-77 (101)
296 1nu4_A U1A RNA binding domain; 99.6 1.2E-15 4E-20 116.6 8.1 82 106-190 5-91 (97)
297 2cpd_A Apobec-1 stimulating pr 99.6 9.8E-15 3.4E-19 112.0 13.2 78 105-190 11-91 (99)
298 2cpd_A Apobec-1 stimulating pr 99.6 4E-15 1.4E-19 114.2 10.8 75 4-86 13-90 (99)
299 2kvi_A Nuclear polyadenylated 99.6 1E-15 3.4E-20 117.0 7.2 77 3-87 7-85 (96)
300 1wf1_A RNA-binding protein RAL 99.6 2.2E-15 7.4E-20 118.0 9.0 74 5-86 26-101 (110)
301 3md3_A Nuclear and cytoplasmic 99.6 3.6E-15 1.2E-19 124.5 10.9 81 3-83 84-165 (166)
302 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.8E-20 117.1 7.5 76 107-188 25-101 (101)
303 1wg1_A KIAA1579 protein, homol 99.6 1.9E-15 6.3E-20 113.5 7.9 75 4-85 3-78 (88)
304 2cqh_A IGF-II mRNA-binding pro 99.6 1.1E-15 3.9E-20 115.8 6.8 78 3-87 5-85 (93)
305 1wf0_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.4E-20 114.3 7.0 77 108-190 4-80 (88)
306 1whx_A Hypothetical protein ri 99.6 9.9E-16 3.4E-20 120.3 6.7 76 4-85 8-84 (111)
307 2g4b_A Splicing factor U2AF 65 99.6 3.6E-15 1.2E-19 125.5 10.5 80 4-83 92-172 (172)
308 2j8a_A Histone-lysine N-methyl 99.6 1.9E-15 6.4E-20 119.5 7.9 77 7-83 3-94 (136)
309 2e44_A Insulin-like growth fac 99.6 3.2E-15 1.1E-19 114.0 9.0 81 106-190 12-94 (96)
310 2xnq_A Nuclear polyadenylated 99.6 6.4E-15 2.2E-19 112.8 10.4 76 105-188 18-95 (97)
311 2jvo_A Nucleolar protein 3; nu 99.6 2.9E-15 1E-19 117.0 8.7 78 105-190 27-105 (108)
312 3lqv_A PRE-mRNA branch site pr 99.6 2.2E-15 7.4E-20 118.9 7.9 80 107-189 6-86 (115)
313 2kvi_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 116.7 6.0 77 106-190 7-85 (96)
314 2j8a_A Histone-lysine N-methyl 99.6 2.8E-15 9.7E-20 118.4 8.4 78 110-187 3-95 (136)
315 2yh0_A Splicing factor U2AF 65 99.6 5.9E-15 2E-19 127.1 11.1 83 4-86 112-195 (198)
316 2e44_A Insulin-like growth fac 99.6 1.7E-15 5.9E-20 115.4 6.8 78 4-85 13-92 (96)
317 2cjk_A Nuclear polyadenylated 99.6 8.8E-16 3E-20 128.6 5.6 81 5-85 86-166 (167)
318 1b7f_A Protein (SXL-lethal pro 99.6 6.2E-15 2.1E-19 123.5 10.6 82 108-189 2-84 (168)
319 1fxl_A Paraneoplastic encephal 99.6 8.1E-15 2.8E-19 122.4 11.3 81 109-189 2-83 (167)
320 2cq2_A Hypothetical protein LO 99.6 3.6E-15 1.2E-19 116.9 8.5 77 3-85 22-106 (114)
321 2i2y_A Fusion protein consists 99.6 1.8E-15 6E-20 125.3 7.1 78 3-85 70-148 (150)
322 2qfj_A FBP-interacting repress 99.6 5.5E-15 1.9E-19 129.0 10.5 83 4-86 123-206 (216)
323 3beg_B Splicing factor, argini 99.6 2.8E-15 9.5E-20 118.5 7.8 75 107-188 14-94 (115)
324 3pgw_S U1-70K; protein-RNA com 99.6 4.8E-15 1.6E-19 143.4 10.9 84 4-87 100-184 (437)
325 2dnl_A Cytoplasmic polyadenyla 99.6 5.2E-15 1.8E-19 116.7 9.1 79 107-187 6-87 (114)
326 2f3j_A RNA and export factor b 99.6 3.4E-15 1.2E-19 127.0 8.4 85 105-190 84-169 (177)
327 1x5p_A Negative elongation fac 99.6 2.1E-14 7.1E-19 109.8 12.0 78 106-191 12-90 (97)
328 3egn_A RNA-binding protein 40; 99.6 2.3E-15 7.9E-20 123.5 6.8 85 107-191 43-133 (143)
329 3egn_A RNA-binding protein 40; 99.6 8.9E-16 3E-20 126.0 4.1 81 4-87 43-132 (143)
330 2voo_A Lupus LA protein; RNA-b 99.6 2.2E-14 7.4E-19 123.8 13.0 80 108-188 108-187 (193)
331 2hzc_A Splicing factor U2AF 65 99.6 5.6E-15 1.9E-19 110.3 7.8 73 3-81 3-86 (87)
332 1whx_A Hypothetical protein ri 99.6 6.6E-15 2.2E-19 115.6 7.9 78 107-190 8-86 (111)
333 1x5p_A Negative elongation fac 99.6 2.7E-14 9.2E-19 109.1 11.2 77 3-87 12-89 (97)
334 2cq2_A Hypothetical protein LO 99.6 1.3E-14 4.3E-19 113.8 9.1 79 107-191 23-109 (114)
335 1wg1_A KIAA1579 protein, homol 99.6 9.4E-15 3.2E-19 109.6 8.1 75 108-189 4-79 (88)
336 1sjr_A Polypyrimidine tract-bi 99.6 2.1E-14 7.3E-19 119.4 10.8 81 106-190 43-126 (164)
337 3beg_B Splicing factor, argini 99.5 5.8E-15 2E-19 116.6 6.8 74 4-84 14-93 (115)
338 1sjr_A Polypyrimidine tract-bi 99.5 1.8E-14 6.2E-19 119.8 9.7 78 5-86 45-125 (164)
339 2hzc_A Splicing factor U2AF 65 99.5 1.6E-14 5.5E-19 107.8 8.1 72 107-184 4-86 (87)
340 3zzy_A Polypyrimidine tract-bi 99.5 3.4E-14 1.2E-18 113.9 10.1 80 106-190 25-108 (130)
341 2pe8_A Splicing factor 45; RRM 99.5 4.9E-14 1.7E-18 109.4 10.4 82 3-84 5-93 (105)
342 3zzy_A Polypyrimidine tract-bi 99.5 7.2E-14 2.5E-18 112.0 11.5 76 6-86 28-107 (130)
343 3nmr_A Cugbp ELAV-like family 99.5 2.4E-14 8.3E-19 120.5 9.1 78 4-82 93-174 (175)
344 2diu_A KIAA0430 protein; struc 99.5 3.3E-14 1.1E-18 106.3 7.9 74 5-88 7-87 (96)
345 2e5i_A Heterogeneous nuclear r 99.5 1.3E-13 4.3E-18 110.0 11.5 79 106-190 22-104 (124)
346 2pe8_A Splicing factor 45; RRM 99.5 9.7E-14 3.3E-18 107.7 10.4 82 107-188 6-94 (105)
347 2e5i_A Heterogeneous nuclear r 99.5 9E-14 3.1E-18 110.8 9.5 73 8-86 27-103 (124)
348 2diu_A KIAA0430 protein; struc 99.5 8.3E-14 2.8E-18 104.1 8.4 74 108-191 7-87 (96)
349 3pgw_A U1-A; protein-RNA compl 99.5 1.5E-12 5E-17 118.6 18.6 82 105-189 5-91 (282)
350 1fje_B Nucleolin RBD12, protei 99.5 7.4E-14 2.5E-18 117.9 9.2 77 4-85 97-174 (175)
351 2bz2_A Negative elongation fac 99.5 4.9E-14 1.7E-18 112.3 7.6 76 3-86 36-112 (121)
352 3tyt_A Heterogeneous nuclear r 99.5 1.8E-13 6.2E-18 119.2 9.7 77 108-189 3-81 (205)
353 2bz2_A Negative elongation fac 99.4 1.2E-13 4.2E-18 109.9 7.4 78 106-191 36-114 (121)
354 3u1l_A PRE-mRNA-splicing facto 99.4 1.5E-13 5.2E-18 121.6 7.2 77 4-86 132-230 (240)
355 2dit_A HIV TAT specific factor 99.4 7.9E-13 2.7E-17 103.8 10.4 82 2-87 11-104 (112)
356 2dit_A HIV TAT specific factor 99.4 1.6E-12 5.4E-17 102.0 11.4 82 105-190 11-104 (112)
357 3sde_A Paraspeckle component 1 99.4 6.8E-13 2.3E-17 119.8 9.5 81 5-86 95-180 (261)
358 2adc_A Polypyrimidine tract-bi 99.4 5.1E-13 1.7E-17 118.2 8.0 81 105-190 30-112 (229)
359 3v4m_A Splicing factor U2AF 65 99.4 1.6E-12 5.4E-17 100.8 9.0 82 107-188 3-97 (105)
360 1jmt_A Splicing factor U2AF 35 99.4 2.5E-13 8.4E-18 105.2 4.2 71 11-82 20-103 (104)
361 3v4m_A Splicing factor U2AF 65 99.4 1.5E-12 5E-17 101.0 7.8 81 4-84 3-96 (105)
362 3u1l_A PRE-mRNA-splicing facto 99.4 1E-12 3.4E-17 116.4 7.3 79 106-190 131-231 (240)
363 2d9o_A DNAJ (HSP40) homolog, s 99.3 5E-12 1.7E-16 96.9 9.5 75 6-86 10-91 (100)
364 1jmt_A Splicing factor U2AF 35 99.3 6.6E-13 2.2E-17 102.8 4.6 71 114-185 20-103 (104)
365 3ue2_A Poly(U)-binding-splicin 99.3 3.4E-12 1.1E-16 101.0 8.7 80 108-187 19-108 (118)
366 1qm9_A Polypyrimidine tract-bi 99.3 1.2E-12 4.2E-17 112.7 6.6 76 109-189 3-80 (198)
367 3ue2_A Poly(U)-binding-splicin 99.3 5E-12 1.7E-16 100.0 8.9 81 4-84 18-108 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.2E-16 94.8 10.7 66 119-190 27-92 (100)
369 3tht_A Alkylated DNA repair pr 99.2 8E-11 2.7E-15 109.6 10.4 76 105-186 14-97 (345)
370 3tht_A Alkylated DNA repair pr 99.2 4.8E-11 1.7E-15 111.1 8.4 74 3-82 15-96 (345)
371 3s6e_A RNA-binding protein 39; 99.1 1.3E-10 4.5E-15 91.1 8.4 79 107-189 5-94 (114)
372 3s6e_A RNA-binding protein 39; 99.1 2.1E-10 7.1E-15 90.0 8.4 79 2-84 3-92 (114)
373 1owx_A Lupus LA protein, SS-B, 99.0 9E-10 3.1E-14 86.7 9.1 77 105-187 14-95 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 1E-09 3.4E-14 81.3 8.1 76 107-190 5-88 (91)
375 1owx_A Lupus LA protein, SS-B, 98.9 2.5E-09 8.4E-14 84.2 7.4 74 3-82 15-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 1.1E-08 3.9E-13 75.6 7.2 73 5-85 6-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 1.1E-08 3.8E-13 76.0 6.6 74 106-187 12-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.6 7.3E-08 2.5E-12 84.4 7.6 67 121-187 141-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.6 6.4E-08 2.2E-12 71.9 5.6 71 5-83 14-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.5 1.3E-07 4.5E-12 82.7 6.5 67 18-84 141-212 (222)
381 2dhx_A Poly (ADP-ribose) polym 98.5 3.7E-07 1.3E-11 68.7 7.8 89 4-122 6-99 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.2 3.3E-06 1.1E-10 64.1 7.5 73 4-82 19-97 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.2 6.9E-06 2.4E-10 62.3 8.2 71 108-184 20-96 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.0 3.9E-05 1.3E-09 57.7 8.5 75 108-190 7-86 (104)
385 1whv_A Poly(A)-specific ribonu 97.5 0.0003 1E-08 52.2 6.5 55 5-68 15-69 (100)
386 1wwh_A Nucleoporin 35, nucleop 97.3 0.001 3.5E-08 51.5 8.0 74 4-84 22-96 (119)
387 1whv_A Poly(A)-specific ribonu 97.3 0.00098 3.4E-08 49.4 7.4 58 104-170 11-68 (100)
388 1wwh_A Nucleoporin 35, nucleop 97.2 0.0016 5.5E-08 50.4 8.7 77 106-189 21-98 (119)
389 1wey_A Calcipressin 1; structu 97.1 0.0019 6.4E-08 48.7 8.0 75 109-189 5-85 (104)
390 1uw4_A UPF3X; nonsense mediate 97.1 0.0026 8.9E-08 47.0 8.5 67 7-73 2-71 (91)
391 3ctr_A Poly(A)-specific ribonu 97.1 0.0012 4E-08 49.2 6.1 52 8-68 8-59 (101)
392 1wey_A Calcipressin 1; structu 96.9 0.0046 1.6E-07 46.6 7.9 73 6-84 5-83 (104)
393 3ctr_A Poly(A)-specific ribonu 96.7 0.0027 9.3E-08 47.2 5.7 53 109-170 6-58 (101)
394 2l9b_A MRNA 3'-END-processing 96.6 3.4E-06 1.2E-10 63.7 -10.9 71 273-343 21-91 (109)
395 1uw4_A UPF3X; nonsense mediate 96.5 0.011 3.9E-07 43.5 7.7 66 110-175 2-70 (91)
396 3p3d_A Nucleoporin 53; structu 96.4 0.0052 1.8E-07 48.3 5.9 79 109-188 7-99 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.2 0.0018 6.2E-08 62.2 2.8 58 5-68 52-109 (464)
398 2l08_A Regulator of nonsense t 96.1 0.0099 3.4E-07 44.2 5.5 65 5-69 8-74 (97)
399 2l08_A Regulator of nonsense t 95.8 0.022 7.4E-07 42.4 6.1 68 108-175 8-78 (97)
400 3pq1_A Poly(A) RNA polymerase; 95.4 0.0059 2E-07 58.6 2.5 56 109-170 53-108 (464)
401 3p3d_A Nucleoporin 53; structu 95.2 0.018 6.3E-07 45.1 4.2 79 5-84 6-98 (132)
402 3d45_A Poly(A)-specific ribonu 89.3 0.66 2.3E-05 45.1 6.9 55 6-69 440-494 (507)
403 4eba_G RNA15, KLLA0F09383P; HA 86.3 0.006 2E-07 50.4 -8.2 72 272-343 25-96 (174)
404 3d45_A Poly(A)-specific ribonu 84.7 2.1 7E-05 41.6 7.4 55 107-170 438-492 (507)
405 4eyt_A Telomerase associated p 48.3 73 0.0025 22.8 7.1 55 5-67 11-65 (129)
406 3fry_A Probable copper-exporti 45.3 42 0.0014 22.1 5.2 59 4-69 4-62 (73)
407 3j21_T 50S ribosomal protein L 42.6 74 0.0025 22.6 6.1 57 9-68 25-83 (86)
408 1vq8_S 50S ribosomal protein L 29.1 1.1E+02 0.0039 21.6 5.3 57 9-68 24-82 (85)
409 4e8u_A Putative uncharacterize 24.2 1.1E+02 0.0039 24.7 5.1 56 111-169 14-81 (172)
410 3dxs_X Copper-transporting ATP 21.5 1.7E+02 0.0057 18.7 6.1 57 7-69 4-64 (74)
411 4eyt_A Telomerase associated p 21.3 2.3E+02 0.0078 20.2 7.7 73 108-188 11-91 (129)
412 3lpe_A Putative transcription 21.3 2.2E+02 0.0076 20.1 5.9 23 47-69 49-71 (92)
413 2pk2_A Cyclin-T1, protein TAT; 20.7 21 0.00071 32.8 0.0 13 120-132 228-240 (358)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.4e-37 Score=265.04 Aligned_cols=179 Identities=34% Similarity=0.703 Sum_probs=155.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
++.+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++||+.++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 46778999999999999999999999999999999999999899999999999999999999999977899999999999
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
+......... ......++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.
T Consensus 89 ~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQRP------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCccccccc------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 8665432211 1234568999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEecCCCCCCC
Q 038933 162 DAANNVLQTRFHKLKYKMVEVKRSHPKDRID 192 (347)
Q Consensus 162 e~a~~Al~~~~~~i~g~~i~v~~a~~~~~~~ 192 (347)
++|.+|+++++..|+|+.|.|.++.++....
T Consensus 157 ~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 157 DSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHHHHHCSCCEETTEECEEEECC------
T ss_pred HHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence 9999999988999999999999999887654
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.4e-35 Score=259.93 Aligned_cols=169 Identities=25% Similarity=0.442 Sum_probs=151.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+.++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999866 6788999999988
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
........ ....+|||+|||+++|+++|+++|++||.|.+++|++++ +.++|||||+|.+.+
T Consensus 93 ~~~~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 93 QRDPSLRK----------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCTHHHH----------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHH
T ss_pred cccccccc----------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHH
Confidence 65432222 235689999999999999999999999999999999885 558999999999999
Q ss_pred HHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 163 AANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 163 ~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
+|++|++. ++..|+|+.|.|.++.++..
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 99999985 99999999999999987643
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.5e-35 Score=250.26 Aligned_cols=166 Identities=42% Similarity=0.835 Sum_probs=153.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
+.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++. .+.+.|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 679999999999999999999999999999999999988999999999999999999999996 4589999999998854
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHH
Q 038933 85 KGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAA 164 (347)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a 164 (347)
+.. .....+|||+|||+++|+++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|
T Consensus 81 ~~~------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 81 RDE------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp HHH------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred hhh------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 321 12356899999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEecCCCC
Q 038933 165 NNVLQTRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 165 ~~Al~~~~~~i~g~~i~v~~a~~~~ 189 (347)
++|+++++..++|+.|.|.++.+++
T Consensus 143 ~~A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 143 DRVCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHCSEECSSSSCEEEEECCCCC
T ss_pred HHHHhCCCEEeCCeEEEEeecCCCC
Confidence 9999988899999999999998763
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=240.23 Aligned_cols=164 Identities=25% Similarity=0.472 Sum_probs=149.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
|+|||+|||+++|+++|+++|++||+|.+|++++++ +++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 799999999999999999999999999999999998 68899999999999999999997755 7899999999998654
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHH
Q 038933 86 GHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAAN 165 (347)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~ 165 (347)
... ......+|||+|||+++|+++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|.
T Consensus 80 ~~~----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 80 QQS----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp CCC----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCC----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 321 2245779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-hCCceeCCeEEEEEecCC
Q 038933 166 NVLQ-TRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 166 ~Al~-~~~~~i~g~~i~v~~a~~ 187 (347)
+|++ +++..++|+.|.|.++.+
T Consensus 144 ~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 144 NAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHhCCCccCCcEEEEEecCC
Confidence 9998 599999999999999863
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3e-33 Score=235.63 Aligned_cols=163 Identities=27% Similarity=0.497 Sum_probs=148.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
+.++|||+|||+++|+++|+++|++||+|.++++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999754 78999999999986
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDA 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~ 163 (347)
+... .....+|||+|||+++++++|+++|++||.|.++.++.++.+++++|+|||+|.+.++
T Consensus 81 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 81 PSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp CCCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 5421 1345789999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHH-hCCceeCCeE--EEEEec
Q 038933 164 ANNVLQ-TRFHKLKYKM--VEVKRS 185 (347)
Q Consensus 164 a~~Al~-~~~~~i~g~~--i~v~~a 185 (347)
|.+|++ .++..+.|+. |.|.+|
T Consensus 143 A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCccCCCccceEEEeC
Confidence 999998 4999999975 777765
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.1e-33 Score=237.20 Aligned_cols=163 Identities=24% Similarity=0.444 Sum_probs=150.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999998754 78999999999986
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDA 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~ 163 (347)
+... .....+|||+|||..+++++|+++|++||.|..+.+++++.+++++|+|||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 5432 2346799999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHH-hCCceeCC--eEEEEEec
Q 038933 164 ANNVLQ-TRFHKLKY--KMVEVKRS 185 (347)
Q Consensus 164 a~~Al~-~~~~~i~g--~~i~v~~a 185 (347)
|.+|++ .++..+.| +.|+|.+|
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999 59999988 99999875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3e-33 Score=245.93 Aligned_cols=180 Identities=21% Similarity=0.437 Sum_probs=153.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
+.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999999754 78999999998876
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHH
Q 038933 84 PKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDA 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~ 163 (347)
........... ........++|||+|||+++|+++|+++|++||.|.+++++.++.+++++|+|||+|.+.++
T Consensus 107 ~~~~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 107 NIGQAQPIIDQ-------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCGGGHHHHHH-------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccccchhhhh-------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 54322111000 00112346799999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHh-CCceeCCeEEEEEecCCCCCC
Q 038933 164 ANNVLQT-RFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 164 a~~Al~~-~~~~i~g~~i~v~~a~~~~~~ 191 (347)
|.+|++. ++..|+|+.|.|.++.++...
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999994 999999999999999876543
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.5e-32 Score=231.87 Aligned_cols=164 Identities=27% Similarity=0.469 Sum_probs=143.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCC--CcceEEEEEEcchhHHHHHHHhcC-ceEe---CeEee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTG--HGRGFGFVIFTKISMAEDALQHKH-HVIL---GKEVE 78 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg--~~kG~aFVeF~~~~~a~~Al~~~~-~~~~---gr~i~ 78 (347)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.++ +++|||||+|.+.++|++|++.++ ..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999776 899999999999999999999866 3444 57777
Q ss_pred eeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEE
Q 038933 79 VKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITF 158 (347)
Q Consensus 79 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F 158 (347)
+.++...... ....++|||+|||+++|+++|+++|++||.|.++.+++++ +++++|+|||+|
T Consensus 82 ~~~~~~~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKNN-----------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCCS-----------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEE
T ss_pred Eccccccccc-----------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEE
Confidence 7776543321 2346799999999999999999999999999999999986 489999999999
Q ss_pred cChHHHHHHHHh-CCceeC---CeEEEEEecC
Q 038933 159 DSEDAANNVLQT-RFHKLK---YKMVEVKRSH 186 (347)
Q Consensus 159 ~~~e~a~~Al~~-~~~~i~---g~~i~v~~a~ 186 (347)
.+.++|.+|++. ++..+. ++.|.|.+|.
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999975 876665 4999999873
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=4.4e-31 Score=228.98 Aligned_cols=181 Identities=20% Similarity=0.361 Sum_probs=147.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC----C-------CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceE
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY----G-------TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVI 72 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~ 72 (347)
...++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|++|++.++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 357999999999999999999999999 5 56665554 456899999999999999995455789
Q ss_pred eCeEeeeeecccCCCccccCCCC--CCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCc
Q 038933 73 LGKEVEVKKAIPKGHKLEESNGH--SGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRP 150 (347)
Q Consensus 73 ~gr~i~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~ 150 (347)
.|++|.|.++............. ..............++|||+|||+++++++|+++|++||.|..+.++.++.++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999999987654322211100 0001112223456789999999999999999999999999999999999889999
Q ss_pred eeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 151 RGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 151 ~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
+|+|||+|.+.++|++|++. ++..|+|+.|.|.++.++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999995 99999999999999987654
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=2e-32 Score=233.08 Aligned_cols=165 Identities=23% Similarity=0.371 Sum_probs=144.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
++.+.++|||+|||+++|+++|+++|++||.+.. .++.+..+++++|||||+|.+.++|++|++..+..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 5678999999999999999999999999998766 334444588899999999999999999997555889999999999
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
+..+... ......+|||+|||+++|+++|+++|++||.|..+ ..+++++|+|||+|.+.
T Consensus 88 ~~~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 88 PKGRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp CCCSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSH
T ss_pred CCCcccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCH
Confidence 8764321 22457899999999999999999999999998776 45689999999999999
Q ss_pred HHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 162 DAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 162 e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
++|.+|++. ++..|+|+.|.|.++.++
T Consensus 147 ~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 147 ADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999995 999999999999999875
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=1.9e-31 Score=226.07 Aligned_cols=159 Identities=22% Similarity=0.442 Sum_probs=141.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC----C-------CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceE
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY----G-------TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVI 72 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~ 72 (347)
.+.++|||+|||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|++|++.++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 367999999999999999999999999 6 7777776654 5899999999999999995456889
Q ss_pred eCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCcee
Q 038933 73 LGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRG 152 (347)
Q Consensus 73 ~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G 152 (347)
.|++|.|.++..... .....+|||+|||+++|+++|+++|++||.|..+.++.++.+++++|
T Consensus 76 ~g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp TTEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred cCceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 999999998754321 12367999999999999999999999999999999999988999999
Q ss_pred EEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecC
Q 038933 153 FGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186 (347)
Q Consensus 153 ~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~ 186 (347)
+|||+|.+.++|++|++. ++..++|+.|.|.+|.
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999985 9999999999999874
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.1e-30 Score=237.76 Aligned_cols=171 Identities=16% Similarity=0.262 Sum_probs=154.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999999899999999999999999999997755 7899999999999
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCC-CHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI-KEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
.+..... ......+|||+|||+++ |+++|+++|++||.|.++.|+.+. +++++|+|||+|.+.
T Consensus 173 ~~~~~~~---------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 173 DAGQLTP---------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETA 236 (284)
T ss_dssp CGGGCCT---------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSH
T ss_pred CCCCCCc---------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCH
Confidence 7653221 22457899999999995 999999999999999999999886 699999999999999
Q ss_pred HHHHHHHHh-CCceeCCeEEEEEecCCCCC
Q 038933 162 DAANNVLQT-RFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 162 e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~ 190 (347)
++|.+|++. ++..|+|+.|.|.++.++..
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999994 99999999999999988765
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.1e-30 Score=240.46 Aligned_cols=174 Identities=16% Similarity=0.271 Sum_probs=145.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
...++|||+|||+++|+++|+++|++|| .|..|+++.++ .++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4578999999999999999999999999 99999999988 48899999999999999999999654 789999999999
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCC-CCHHHHHHhhhcCceeEeecccccCC-CCCceeEEEEEEc
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLD-IKEEEFKSYFESFGTVTDAPVICDKE-TGRPRGFGFITFD 159 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~-~~~~~G~afV~F~ 159 (347)
+.+....... ........+|||+|||+. +|+++|+++|++||.|..|.++.+.. |++++|+|||+|.
T Consensus 194 a~~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 194 SNPLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CCCC--------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCCCcccccc-----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 8765433221 122345789999999999 99999999999999999999999876 6999999999999
Q ss_pred ChHHHHHHHHhCCceeCCeEEEEEecCCCC
Q 038933 160 SEDAANNVLQTRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 160 ~~e~a~~Al~~~~~~i~g~~i~v~~a~~~~ 189 (347)
+.++|.+|+.+++..|+|+.|.|.++.+++
T Consensus 263 ~~~~A~~A~~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 263 NKDSAERALQMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp SHHHHHHHGGGTTEEETTEEEEEEECCCCC
T ss_pred CHHHHHHHHHhcCCEECCcEEEEEEecCCC
Confidence 999999999559999999999999998763
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.4e-30 Score=224.84 Aligned_cols=175 Identities=19% Similarity=0.288 Sum_probs=139.0
Q ss_pred CCCCeEEEcCCC-CCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 4 VSLRKLFVGGVS-RETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 4 ~~~r~l~V~nLp-~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
.+.++|||+||| +++|+++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998753 5899999999999999999866 789999999999
Q ss_pred cccCCCccccC----C---------CCCCCCC------CCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCcee--Eeec
Q 038933 82 AIPKGHKLEES----N---------GHSGNCV------GDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTV--TDAP 140 (347)
Q Consensus 82 a~~~~~~~~~~----~---------~~~~~~~------~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v--~~v~ 140 (347)
+..+....... . ....... .......+.++|||+|||+++|+++|+++|++||.| ..++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 86543211100 0 0000000 000112456789999999999999999999999999 8898
Q ss_pred ccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCe----EEEEEec
Q 038933 141 VICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYK----MVEVKRS 185 (347)
Q Consensus 141 i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~----~i~v~~a 185 (347)
++.++ ++++|+|||+|.+.++|.+|+.. ++..|.|+ .+.|++|
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88775 56679999999999999999985 99999887 4555544
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.8e-29 Score=231.23 Aligned_cols=177 Identities=19% Similarity=0.349 Sum_probs=144.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeE
Q 038933 2 EPVSLRKLFVGGVSRETNEETLR----EYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKE 76 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~ 76 (347)
+....++|||+|||+++|+++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++|++.++ ..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45778999999999999999977 8999999999999886 77899999999999999999998765 7899999
Q ss_pred eeeeecccCCCccccCCCCC-------------------------------------CC---------------------
Q 038933 77 VEVKKAIPKGHKLEESNGHS-------------------------------------GN--------------------- 98 (347)
Q Consensus 77 i~v~~a~~~~~~~~~~~~~~-------------------------------------~~--------------------- 98 (347)
|.|.++..+........... ..
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999865442100000000 00
Q ss_pred -----------------------------------CCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccc
Q 038933 99 -----------------------------------CVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVIC 143 (347)
Q Consensus 99 -----------------------------------~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~ 143 (347)
.........+.++|||+|||.++|+++|+++|++||.|.+|+++.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 000012234568899999999999999999999999999999986
Q ss_pred cCCCCCceeEEEEEEcChHHHHHHHHh-CCceeC-CeEEEEEecC
Q 038933 144 DKETGRPRGFGFITFDSEDAANNVLQT-RFHKLK-YKMVEVKRSH 186 (347)
Q Consensus 144 ~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~-g~~i~v~~a~ 186 (347)
++ +|+|||+|.+.++|.+|++. ++..|. |+.|+|.++.
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 54 58999999999999999995 999999 9999999975
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2e-29 Score=224.38 Aligned_cols=176 Identities=19% Similarity=0.256 Sum_probs=143.5
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 3 PVSLRKLFVGGVSR-ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 3 ~~~~r~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
..+.++|||+|||+ ++|+++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35679999999999 99999999999999999999999875 6899999999999999998654 78999999999
Q ss_pred ecccCCCccccCCC-----------------CCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCc-eeEeeccc
Q 038933 81 KAIPKGHKLEESNG-----------------HSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFG-TVTDAPVI 142 (347)
Q Consensus 81 ~a~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~ 142 (347)
++..+......... .............+.++|||+|||+.+++++|+++|++|| .|..++++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 98755321111000 0000000011234578999999999999999999999999 99999986
Q ss_pred ccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeC-CeEEEEEecCCC
Q 038933 143 CDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLK-YKMVEVKRSHPK 188 (347)
Q Consensus 143 ~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~-g~~i~v~~a~~~ 188 (347)
.+ .+|+|||+|.+.++|.+|++ +++..++ |+.|.|.++.++
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 53 36799999999999999999 5999999 999999999764
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6.8e-29 Score=227.71 Aligned_cols=155 Identities=19% Similarity=0.372 Sum_probs=141.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+.++|||+|||+++|+++|+++|++|| |.++++ ++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3578999999999999999999999999 988888 3456899999999999999998855 7899999999985
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChH
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSED 162 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e 162 (347)
. ...+|||+|||+++|+++|+++|++||.|..+.++.++.+++++|+|||+|.+.+
T Consensus 93 ~------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 148 (284)
T 3smz_A 93 P------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD 148 (284)
T ss_dssp C------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred C------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHH
Confidence 2 2468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hCCceeCCeEEEEEecCCCC
Q 038933 163 AANNVLQ-TRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 163 ~a~~Al~-~~~~~i~g~~i~v~~a~~~~ 189 (347)
+|.+|++ .++..++|+.|.|.++.++.
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9999996 59999999999999987654
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=4e-29 Score=230.15 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=137.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+...++|||+|||+++|+++|+++|++||+|.+|+|++++.. ++|||||+|.+.++|++|++..+..+.|+.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 567899999999999999999999999999999999998733 479999999999999999976568999999999985
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCc-eeEeecccccCCCCCceeEEEEEEcCh
Q 038933 83 IPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFG-TVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
...+|||+|||+++|+++|+++|++|| .|..|.++.++. ++++|||||+|.+.
T Consensus 116 -------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~ 169 (292)
T 2ghp_A 116 -------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSK 169 (292)
T ss_dssp -------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSH
T ss_pred -------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCH
Confidence 256999999999999999999999999 999999998876 88999999999999
Q ss_pred HHHHHHHH-hCCceeCCeEEEEEecCCCCC
Q 038933 162 DAANNVLQ-TRFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 162 e~a~~Al~-~~~~~i~g~~i~v~~a~~~~~ 190 (347)
++|.+|++ +++..++|+.|.|.++.++..
T Consensus 170 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 170 EDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 99999999 699999999999999987654
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.8e-29 Score=219.23 Aligned_cols=174 Identities=19% Similarity=0.262 Sum_probs=142.5
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 5 SLRKLFVGGVSR-ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 5 ~~r~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
+.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 578999999999 99999999999999999999999875 5799999999999999999654 7899999999998
Q ss_pred ccCCCccccCCC-----------------CCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCc-eeEeeccccc
Q 038933 83 IPKGHKLEESNG-----------------HSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFG-TVTDAPVICD 144 (347)
Q Consensus 83 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~ 144 (347)
............ .............+.++|||+|||..+|+++|+++|++|| .|..+.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 755321111000 0000000111234578999999999999999999999999 9999998754
Q ss_pred CCCCCceeEEEEEEcChHHHHHHHH-hCCceeC-CeEEEEEecCCC
Q 038933 145 KETGRPRGFGFITFDSEDAANNVLQ-TRFHKLK-YKMVEVKRSHPK 188 (347)
Q Consensus 145 ~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~-g~~i~v~~a~~~ 188 (347)
.+|+|||+|.+.++|.+|++ .++..++ |+.|.|.++.++
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 26899999999999999999 5999999 999999998764
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=9e-29 Score=224.54 Aligned_cols=157 Identities=27% Similarity=0.436 Sum_probs=141.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|+..++ ..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345689999999999999999999999999999999765 4899999999999999999754 789999999999
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcCh
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSE 161 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 161 (347)
+.+ ..+|||+|||+.+|+++|+++|++||.|.+|.++.+ .+++++|+|||+|.+.
T Consensus 93 a~~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 93 ATH------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAK 147 (261)
T ss_dssp CCC------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSH
T ss_pred ccc------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCH
Confidence 842 458999999999999999999999999999999999 5799999999999999
Q ss_pred HHHHHHHHh--CCceeC---CeEEEEEecCCCCC
Q 038933 162 DAANNVLQT--RFHKLK---YKMVEVKRSHPKDR 190 (347)
Q Consensus 162 e~a~~Al~~--~~~~i~---g~~i~v~~a~~~~~ 190 (347)
++|.+|+.. ++..+. ++.|.|.++.+...
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 999999986 555555 99999999987654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=8.4e-23 Score=171.05 Aligned_cols=149 Identities=16% Similarity=0.165 Sum_probs=112.1
Q ss_pred EEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC--ceEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceE
Q 038933 35 ETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH--HVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKI 112 (347)
Q Consensus 35 ~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~--~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (347)
.++|+.+.. +++|||||+|.+.++|++|++.++ ..+.+. +.+........... ...............+|
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGE-WTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCE-EEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCc-ccccCccccccccc-----cccccccccCCCCCCEE
Confidence 467777753 689999999999999999998754 122222 11111110000000 00001112233557899
Q ss_pred EEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCCCCC
Q 038933 113 FVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 113 ~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~~ 191 (347)
||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++. ++..|+|+.|.|.++.++...
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999985 999999999999999876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.4e-22 Score=160.79 Aligned_cols=111 Identities=15% Similarity=0.347 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
|....+|||+|||+++|+++|+++|++||.|.+|+|++++ ++++|||||+|.+.++|++|++.++ ..|.|++|.|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999986 4589999999999999999998855 789999999999
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHH
Q 038933 82 AIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEE 125 (347)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~ 125 (347)
+..+....... ........+|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~----------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAEL----------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC--------------------------------------
T ss_pred CCCcccccccc----------ccccCCCCceEeCCCCCCccccc
Confidence 87654332221 11223456799999999999863
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.7e-20 Score=155.63 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=111.3
Q ss_pred CCCcceEEEEEEcchhHHHHHHHhc-C-ceEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCC
Q 038933 44 TGHGRGFGFVIFTKISMAEDALQHK-H-HVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDI 121 (347)
Q Consensus 44 tg~~kG~aFVeF~~~~~a~~Al~~~-~-~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~ 121 (347)
..+.+|+++|+|.+.++|++|++.+ + ..+.| .|.+.++..+....... ...............++|||+|||+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS--HHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS--SSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc--ccccccccccCCCCCCEEEEeCCCCCC
Confidence 3467899999999999999999887 5 67889 99999876533221110 111111223344567899999999999
Q ss_pred CHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecCCCC
Q 038933 122 KEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSHPKD 189 (347)
Q Consensus 122 t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~~~~ 189 (347)
|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++ +++..|+|+.|.|.++.++.
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999876 58899999999999999998 59999999999999998753
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=142.36 Aligned_cols=80 Identities=30% Similarity=0.499 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999998855 78999999999985
Q ss_pred c
Q 038933 84 P 84 (347)
Q Consensus 84 ~ 84 (347)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=7e-21 Score=184.25 Aligned_cols=84 Identities=23% Similarity=0.449 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+.+|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||.. ++..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999999999999999999999999999999975 999999999999999
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87654
No 26
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=4.1e-21 Score=170.53 Aligned_cols=82 Identities=15% Similarity=0.314 Sum_probs=76.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCc--eeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFG--TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
..++|||+|||+++|+++|+++|++|| .|++|+|++|+.+++++|||||+|.+.++|++||+ +++..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999 499999999999999
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=141.70 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC--ceEeCeEeeeeec
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH--HVILGKEVEVKKA 82 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~--~~~~gr~i~v~~a 82 (347)
+++|||+|||+++|+++|+++|++|| +|.+|+|++++.+++++|||||+|.+.++|++|++.+. ..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999998753 4688999999999
Q ss_pred ccCCCc
Q 038933 83 IPKGHK 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 776543
No 28
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=139.26 Aligned_cols=80 Identities=29% Similarity=0.550 Sum_probs=76.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~ 186 (347)
..++|||+|||+++|+++|+++|++||.|.++++++|+.+++++|||||+|.+.++|++|++. ++..|+|+.|.|.+|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467899999999999999999999999999999999999999999999999999999999984 9999999999999997
Q ss_pred C
Q 038933 187 P 187 (347)
Q Consensus 187 ~ 187 (347)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 29
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2.2e-19 Score=149.95 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=79.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred cCCCCC
Q 038933 185 SHPKDR 190 (347)
Q Consensus 185 a~~~~~ 190 (347)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987543
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=8.9e-20 Score=138.36 Aligned_cols=84 Identities=21% Similarity=0.450 Sum_probs=77.2
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCc-eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh--CCceeCCeEEEEEec
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFG-TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT--RFHKLKYKMVEVKRS 185 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~--~~~~i~g~~i~v~~a 185 (347)
+++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+++++|||||+|.+.++|++|++. ++..++|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999999999999999999999999999985 456799999999999
Q ss_pred CCCCCCC
Q 038933 186 HPKDRID 192 (347)
Q Consensus 186 ~~~~~~~ 192 (347)
.++....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8876543
No 31
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=4e-19 Score=133.35 Aligned_cols=81 Identities=36% Similarity=0.686 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
++.+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.++..+.|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 46788999999999999999999999999999999999999899999999999999999999998888889999999987
Q ss_pred c
Q 038933 82 A 82 (347)
Q Consensus 82 a 82 (347)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=139.84 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999866 789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 86543
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=140.10 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCC--eEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc-----eEeC
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGT--VEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH-----VILG 74 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~--v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~-----~~~g 74 (347)
+.....||||+|||+++|+++|+++|++||. |.+|++++|+.++++||||||+|.+.++|++|++.++. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3567899999999999999999999999995 67999999999999999999999999999999998653 5889
Q ss_pred eEeeeeeccc
Q 038933 75 KEVEVKKAIP 84 (347)
Q Consensus 75 r~i~v~~a~~ 84 (347)
|+|.|.+|..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999853
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=133.33 Aligned_cols=86 Identities=45% Similarity=0.844 Sum_probs=81.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+++++..|+|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 038933 186 HPKDRI 191 (347)
Q Consensus 186 ~~~~~~ 191 (347)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 887654
No 35
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=7.6e-19 Score=137.78 Aligned_cols=86 Identities=40% Similarity=0.665 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
++.+.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.++..+.|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 35678999999999999999999999999999999999999899999999999999999999999988899999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 976543
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=3.3e-18 Score=135.27 Aligned_cols=89 Identities=25% Similarity=0.454 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+..+.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999865 78999999999
Q ss_pred ecccCCCccc
Q 038933 81 KAIPKGHKLE 90 (347)
Q Consensus 81 ~a~~~~~~~~ 90 (347)
++..+.....
T Consensus 91 ~a~~~~~~~~ 100 (115)
T 2dgo_A 91 WATRKPPAPK 100 (115)
T ss_dssp ESSCCCCCSC
T ss_pred EccCCCCCCc
Confidence 9987665443
No 37
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-18 Score=134.54 Aligned_cols=88 Identities=31% Similarity=0.594 Sum_probs=79.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEE
Q 038933 103 DDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEV 182 (347)
Q Consensus 103 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v 182 (347)
.......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.....|+|+.|.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999997334899999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=135.95 Aligned_cols=84 Identities=14% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++|+.|++++|||||+|++.++|++|++ +++..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999999998 4999999999999999
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=133.61 Aligned_cols=87 Identities=38% Similarity=0.685 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
+....++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.++..+.|++|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999899999999999999999999999555789999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9766543
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=136.18 Aligned_cols=86 Identities=34% Similarity=0.651 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
++...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.++..|.|++|.|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999999988899999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=134.36 Aligned_cols=86 Identities=22% Similarity=0.352 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+..+.++|||+|||+++|+++|+++|++||+|..|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999865 78999999999
Q ss_pred ecccCCC
Q 038933 81 KAIPKGH 87 (347)
Q Consensus 81 ~a~~~~~ 87 (347)
++.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=130.15 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999998899999999999999999999999855 7899999999998
Q ss_pred ccC
Q 038933 83 IPK 85 (347)
Q Consensus 83 ~~~ 85 (347)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 43
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=135.03 Aligned_cols=87 Identities=38% Similarity=0.715 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
++...++|||+|||+++|+++|+++|++||+|..|+|+.++.+++++|||||+|.+.++|++||+..+..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 46788999999999999999999999999999999999998899999999999999999999999955789999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9776543
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=133.03 Aligned_cols=87 Identities=29% Similarity=0.373 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+..+.++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999999999899999999999999999999998766 68899999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99776543
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.7e-18 Score=128.76 Aligned_cols=81 Identities=38% Similarity=0.758 Sum_probs=76.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEe
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~ 184 (347)
...+.++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.++..|+|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999888999999999987
Q ss_pred c
Q 038933 185 S 185 (347)
Q Consensus 185 a 185 (347)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 46
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=1.1e-17 Score=132.16 Aligned_cols=89 Identities=29% Similarity=0.480 Sum_probs=82.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
......++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3446688999999999999999999999999999999999988999999999999999999999985 999999999999
Q ss_pred EecCCCCCCC
Q 038933 183 KRSHPKDRID 192 (347)
Q Consensus 183 ~~a~~~~~~~ 192 (347)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998876543
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=133.45 Aligned_cols=88 Identities=33% Similarity=0.622 Sum_probs=81.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
......++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.++..|+|+.|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ecCCCCCC
Q 038933 184 RSHPKDRI 191 (347)
Q Consensus 184 ~a~~~~~~ 191 (347)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99877653
No 48
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=5.6e-18 Score=131.24 Aligned_cols=86 Identities=19% Similarity=0.369 Sum_probs=79.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
....+.++|||+|||+++|+++|+++|++|| |.+|.|++++.+++++|||||+|.+.++|++|+++++..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 3456688999999999999999999999997 999999999999999999999999999999999669999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.9e-18 Score=127.32 Aligned_cols=81 Identities=27% Similarity=0.456 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
..+|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999998899999999999999999999999755 789999999999976
Q ss_pred CC
Q 038933 85 KG 86 (347)
Q Consensus 85 ~~ 86 (347)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 50
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8e-18 Score=130.35 Aligned_cols=87 Identities=30% Similarity=0.528 Sum_probs=80.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEe
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~ 184 (347)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ +++.|+|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998 46899999999999
Q ss_pred cCCCCCCC
Q 038933 185 SHPKDRID 192 (347)
Q Consensus 185 a~~~~~~~ 192 (347)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqg_A 90 PNSKQSQD 97 (103)
T ss_dssp CCTTCCCC
T ss_pred cCCCCcCC
Confidence 98876543
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=132.89 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=74.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCce--eEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CC----ceeCCe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGT--VTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RF----HKLKYK 178 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~--v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~----~~i~g~ 178 (347)
.....+|||+|||+++|+++|+++|++||. |.+|++++|+.+++++|||||+|.+.++|++|++. ++ ..|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345789999999999999999999999995 67899999999999999999999999999999985 44 369999
Q ss_pred EEEEEecCC
Q 038933 179 MVEVKRSHP 187 (347)
Q Consensus 179 ~i~v~~a~~ 187 (347)
.|.|++|..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999875
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.7e-18 Score=130.77 Aligned_cols=87 Identities=23% Similarity=0.425 Sum_probs=81.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44668999999999999999999999999999999999999899999999999999999999999 59999999999999
Q ss_pred ecCCCCCC
Q 038933 184 RSHPKDRI 191 (347)
Q Consensus 184 ~a~~~~~~ 191 (347)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887553
No 53
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2.1e-18 Score=136.42 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+..+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999998855 78999999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99766543
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=129.91 Aligned_cols=85 Identities=24% Similarity=0.399 Sum_probs=79.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999999899999999999999999999996 5999999999999999
Q ss_pred CCCCCC
Q 038933 186 HPKDRI 191 (347)
Q Consensus 186 ~~~~~~ 191 (347)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 55
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=6.4e-19 Score=143.58 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=81.4
Q ss_pred EEEEEEcchhHHHHHHHhcCc-eEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHH
Q 038933 50 FGFVIFTKISMAEDALQHKHH-VILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKS 128 (347)
Q Consensus 50 ~aFVeF~~~~~a~~Al~~~~~-~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~ 128 (347)
++|++|++...+..|++.++. ...|+. .+.+ ..........++|||+|||+++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~------------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSY------------------GRPPPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp ------------------------------CCS------------------CCSCSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCc------------------CCCCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 678888888888888887652 222221 1111 11123345578999999999999999999
Q ss_pred hhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCCCCC
Q 038933 129 YFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 129 ~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~~~~ 191 (347)
+|++||.|..|.|+.++.+++++|||||+|.+.++|++|++. ++..|+|+.|.|.++.++...
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999999999998999999999999999999999985 899999999999999876543
No 56
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.1e-18 Score=145.33 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=79.5
Q ss_pred EEEcchhHHHHHHHhcCc---eEeCeEeeeeecccCCCccccCCC--CCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHH
Q 038933 53 VIFTKISMAEDALQHKHH---VILGKEVEVKKAIPKGHKLEESNG--HSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFK 127 (347)
Q Consensus 53 VeF~~~~~a~~Al~~~~~---~~~gr~i~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~ 127 (347)
.+|++.++|+.|+..+.. .-.|+.+...++............ ........+....+.++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999887652 223555555543221100000000 000011122334567899999999999999999
Q ss_pred HhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecCCCCCC
Q 038933 128 SYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSHPKDRI 191 (347)
Q Consensus 128 ~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~~~~~~ 191 (347)
++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|.|.++.++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999999999999999999999999999999999999999998 4999999999999999876553
No 57
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.4e-18 Score=131.32 Aligned_cols=86 Identities=31% Similarity=0.502 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
+....++|||+|||+++++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++. .+.+.|++|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 346789999999999999999999999999999999999998999999999999999999999995 5689999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9776544
No 58
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-18 Score=131.17 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=79.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCC-CCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKET-GRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
+..+.++|||+|||+++|+++|+++|++|| |..|.|+.++.+ ++++|||||+|.+.++|++|+.+++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 345678999999999999999999999999 999999999988 999999999999999999999669999999999999
Q ss_pred ecCCCCCC
Q 038933 184 RSHPKDRI 191 (347)
Q Consensus 184 ~a~~~~~~ 191 (347)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99886553
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=132.03 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+.+.++|||+|||+++|+++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4678999999999999999999999999999999999998 99999999999999999999998865 788999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 97654
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=136.60 Aligned_cols=87 Identities=22% Similarity=0.494 Sum_probs=80.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
......++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++|++. ++..|+|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++.++..
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 61
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=130.60 Aligned_cols=83 Identities=30% Similarity=0.449 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++...++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999999865 78999999999
Q ss_pred eccc
Q 038933 81 KAIP 84 (347)
Q Consensus 81 ~a~~ 84 (347)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9853
No 62
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-18 Score=132.11 Aligned_cols=88 Identities=23% Similarity=0.385 Sum_probs=81.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-C------CceeCC
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-R------FHKLKY 177 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~------~~~i~g 177 (347)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++. + +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 445678999999999999999999999999999999999999999999999999999999999985 7 899999
Q ss_pred eEEEEEecCCCCCCC
Q 038933 178 KMVEVKRSHPKDRID 192 (347)
Q Consensus 178 ~~i~v~~a~~~~~~~ 192 (347)
+.|.|.++.++....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999998876543
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=135.74 Aligned_cols=87 Identities=34% Similarity=0.619 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeee
Q 038933 1 MEPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEV 79 (347)
Q Consensus 1 ~e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v 79 (347)
+|..+.++|||+|||+++|+++|+++|++||.|.+|.++.++ +++++|||||+|.+.++|++|++.++ ..+.|+.|.|
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 577889999999999999999999999999999999999998 99999999999999999999999865 7899999999
Q ss_pred eecccCCCc
Q 038933 80 KKAIPKGHK 88 (347)
Q Consensus 80 ~~a~~~~~~ 88 (347)
.++......
T Consensus 81 ~~a~~~~~~ 89 (116)
T 2fy1_A 81 EQAKKPSFQ 89 (116)
T ss_dssp EECCCSSCS
T ss_pred EECCCCCCC
Confidence 999765543
No 64
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=131.27 Aligned_cols=85 Identities=22% Similarity=0.503 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4678999999999999999999999999999999999999899999999999999999999999755 789999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976543
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=131.69 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=81.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred EecCCCCCC
Q 038933 183 KRSHPKDRI 191 (347)
Q Consensus 183 ~~a~~~~~~ 191 (347)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876543
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=133.95 Aligned_cols=87 Identities=31% Similarity=0.468 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++...++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999999865 78999999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99766543
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.8e-18 Score=127.98 Aligned_cols=80 Identities=28% Similarity=0.488 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+.+.++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999999999999999999999999999999998899999999999999999999998755 789999999998
Q ss_pred c
Q 038933 82 A 82 (347)
Q Consensus 82 a 82 (347)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 68
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=130.92 Aligned_cols=87 Identities=24% Similarity=0.464 Sum_probs=80.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 49999999999999
Q ss_pred ecCCCCCC
Q 038933 184 RSHPKDRI 191 (347)
Q Consensus 184 ~a~~~~~~ 191 (347)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 69
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=131.02 Aligned_cols=88 Identities=25% Similarity=0.436 Sum_probs=81.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
....+.++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999995 899999999999
Q ss_pred EecCCCCCC
Q 038933 183 KRSHPKDRI 191 (347)
Q Consensus 183 ~~a~~~~~~ 191 (347)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876553
No 70
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=133.62 Aligned_cols=86 Identities=29% Similarity=0.373 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34568999999999999999999999999999999999999899999999999999999999999755 78999999999
Q ss_pred ecccCCC
Q 038933 81 KAIPKGH 87 (347)
Q Consensus 81 ~a~~~~~ 87 (347)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9976543
No 71
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=6.7e-18 Score=130.80 Aligned_cols=85 Identities=16% Similarity=0.287 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
.+...++|||+|||+++|+++|+++|++|| |.+|+|++++.+++++|||||+|.+.++|++|++.++..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 456789999999999999999999999996 9999999999899999999999999999999994455789999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976543
No 72
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=135.17 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
+....++|||+|||+++|+++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|++|++.++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356779999999999999999999999999999999999985 9999999999999999999999656889999999998
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
+...
T Consensus 86 ~~~~ 89 (103)
T 1s79_A 86 KDDY 89 (103)
T ss_dssp HHHH
T ss_pred chHH
Confidence 8653
No 73
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=131.51 Aligned_cols=85 Identities=24% Similarity=0.489 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEE-EEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
....++|||+|||+++|+++|+++|++||.|..+ ++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3568999999999999999999999999999999 999998899999999999999999999999765 78999999999
Q ss_pred ecccCCC
Q 038933 81 KAIPKGH 87 (347)
Q Consensus 81 ~a~~~~~ 87 (347)
++.++..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9976543
No 74
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=132.69 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i~v 79 (347)
+.+.++|||+|||+++|+++|+++|++||+|.+|+|+++ ||||||+|.+.++|++|++.++ ..+.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 567899999999999999999999999999999999986 4899999999999999999753 5799999999
Q ss_pred eecccCCCcc
Q 038933 80 KKAIPKGHKL 89 (347)
Q Consensus 80 ~~a~~~~~~~ 89 (347)
.++..+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9997765444
No 75
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=129.55 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+.+.++|||+|||+++++++|+++|++||+|..|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4678999999999999999999999999999999999999889999999999999999999998765 789999999998
Q ss_pred c
Q 038933 82 A 82 (347)
Q Consensus 82 a 82 (347)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 7
No 76
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=4e-18 Score=130.34 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
+.++|||+|||+++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999899999999999999999999998755 78999999999997
Q ss_pred cCCCc
Q 038933 84 PKGHK 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76543
No 77
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=130.70 Aligned_cols=85 Identities=28% Similarity=0.428 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCC---CCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRL---TGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVE 78 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~ 78 (347)
..+.++|||+|||+++|+++|+++|++||.|..|+++.++. +++++|||||+|.+.++|++|++.++ ..|.|++|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35789999999999999999999999999999999999876 66899999999999999999999865 789999999
Q ss_pred eeecccCCC
Q 038933 79 VKKAIPKGH 87 (347)
Q Consensus 79 v~~a~~~~~ 87 (347)
|.++.++..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976543
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=131.39 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCC-CCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLT-GHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t-g~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~ 80 (347)
.....++|||+|||+++|+++|+++|++|| |.+|+|+.++.+ ++++|||||+|.+.++|++||..++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 356779999999999999999999999999 999999999887 999999999999999999999445588999999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99776543
No 79
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=128.84 Aligned_cols=84 Identities=27% Similarity=0.552 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+++|+++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++ +++..++|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 80
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=126.80 Aligned_cols=82 Identities=28% Similarity=0.468 Sum_probs=75.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++. ++..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4578999999999999999999999999999999999988999999999999999999999995 999999999999999
Q ss_pred CCC
Q 038933 186 HPK 188 (347)
Q Consensus 186 ~~~ 188 (347)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 81
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=134.33 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
.+...++|||+|||+++|+++|+++|++||.+ +|+|+.++ +++++|||||+|.+.++|++||+.++..|.+|.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 35678899999999999999999999999955 99999998 99999999999999999999997666889999999998
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86543
No 82
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=132.70 Aligned_cols=86 Identities=28% Similarity=0.470 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4578999999999999999999999999999999999998899999999999999999999998755 789999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9766543
No 83
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=133.77 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc-------CceEeC
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK-------HHVILG 74 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~-------~~~~~g 74 (347)
++...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3467899999999999999999999999999999999999989999999999999999999999986 467899
Q ss_pred eEeeeeecccCCCc
Q 038933 75 KEVEVKKAIPKGHK 88 (347)
Q Consensus 75 r~i~v~~a~~~~~~ 88 (347)
++|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999776543
No 84
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=8.8e-18 Score=124.67 Aligned_cols=80 Identities=26% Similarity=0.567 Sum_probs=76.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
.+|||+|||+++++++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|++|++. ++..++|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999999999999999999999999999999994 999999999999999876
Q ss_pred C
Q 038933 189 D 189 (347)
Q Consensus 189 ~ 189 (347)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 85
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.2e-17 Score=132.00 Aligned_cols=87 Identities=24% Similarity=0.449 Sum_probs=80.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++. ++..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999975 9999999999999
Q ss_pred ecCCCCCC
Q 038933 184 RSHPKDRI 191 (347)
Q Consensus 184 ~a~~~~~~ 191 (347)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99877653
No 86
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=126.82 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=78.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
....+.++|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|+|||+|.+.++|++|++. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456788999999999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred EecCC
Q 038933 183 KRSHP 187 (347)
Q Consensus 183 ~~a~~ 187 (347)
.++.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 87
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=128.89 Aligned_cols=85 Identities=27% Similarity=0.487 Sum_probs=79.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEee-cccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDA-PVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
.+.++|||+|||+++|+++|+++|++||.|..+ +|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 999998899999999999999999999999 599999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 88
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=7.6e-19 Score=132.83 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCC--CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYG--TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999998766 68999999999997
Q ss_pred cCC
Q 038933 84 PKG 86 (347)
Q Consensus 84 ~~~ 86 (347)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 89
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=133.02 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEE-EEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEE-TLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+++++|||||+|.+.++|++||+.++..|.||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 456799999999999999999999999999987 888888 599999999999999999999999966889999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+..++.
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 876543
No 90
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.8e-18 Score=130.50 Aligned_cols=85 Identities=22% Similarity=0.412 Sum_probs=78.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe-ecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD-APVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
......+|||+|||+++|+++|+++|++||.|.+ |.|+.+ .+++++|||||+|.+.++|++|+++++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 888888 77999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.+++.
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9877654
No 91
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=7.6e-18 Score=126.74 Aligned_cols=82 Identities=22% Similarity=0.475 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
.+.++|||+|||+++|+++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|+..++..+.|++|.|.++.
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 35789999999999999999999999999999999999889999999999999999999999445588999999999986
Q ss_pred cC
Q 038933 84 PK 85 (347)
Q Consensus 84 ~~ 85 (347)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 92
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=131.43 Aligned_cols=85 Identities=26% Similarity=0.466 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++.+.++|||+|||+++|+++|+++|++||.|..|+++.+ +++++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 5678999999999999999999999999999999999998 89999999999999999999999755 78899999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99776543
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.6e-18 Score=132.34 Aligned_cols=83 Identities=27% Similarity=0.467 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456889999999999999999999999999999999999899999999999999999999999755 7899999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 94
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=3.4e-19 Score=145.60 Aligned_cols=124 Identities=12% Similarity=0.145 Sum_probs=75.0
Q ss_pred eEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHH
Q 038933 49 GFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKS 128 (347)
Q Consensus 49 G~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~ 128 (347)
++||.+|.-++.+..++........+....-... ...........++|||+|||+++|+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g----------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~ 65 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG----------------DSEFTVQSTTGHCVHMRGLPYKATENDIYN 65 (139)
T ss_dssp -----------------------------------------------------------CCCCEECCSCCTTCCHHHHHH
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCC----------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 5778888777776666655433333322210000 001122334567999999999999999999
Q ss_pred hhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCCCCC
Q 038933 129 YFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 129 ~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~~~~ 190 (347)
+|++|| |++|.|++++. ++++|||||+|++.++|++||++++..|+++.|+|..+.+++.
T Consensus 66 ~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 66 FFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred HHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 999999 67999999986 9999999999999999999997788999999999999876543
No 95
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=1.6e-18 Score=137.10 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=91.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
.+...++|||+|||+++|+++|+++|++||.|.+|+++.+ +.++|||||+|.+.++|++|++.++ ..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4677899999999999999999999999999999999975 4558999999999999999999755 78899999999
Q ss_pred ecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHhhhcCce
Q 038933 81 KAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIKEEEFKSYFESFGT 135 (347)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~ 135 (347)
++.++... .+++...++++|+++|++||.
T Consensus 81 ~a~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98654321 456778899999999999984
No 96
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=131.47 Aligned_cols=83 Identities=14% Similarity=0.276 Sum_probs=75.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEe
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~ 184 (347)
......+|||+|||+++|+++|+++|++||.+ +|+|++++ +++++|||||+|.+.++|++||++++..|+++.|+|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999954 99999998 79999999999999999999998899999999999998
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 97
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=127.13 Aligned_cols=85 Identities=24% Similarity=0.557 Sum_probs=78.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++. ++..++|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999975 9999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=133.17 Aligned_cols=100 Identities=27% Similarity=0.369 Sum_probs=81.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecccC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIPK 85 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~~ 85 (347)
++|||+|||+++|+++|+++|++||+|.+|+++.+ ++|||||+|.+.++|++|++.++ ..+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 66899999999999999999755 7899999999999776
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 038933 86 GHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPL 119 (347)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 119 (347)
........ .........+|||+||+.
T Consensus 76 ~~~~~~~~--------~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDR--------PPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCS--------CCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCC--------CCccccCCCceecCCCCC
Confidence 53322211 111223467899999973
No 99
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-18 Score=136.44 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCe-EEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTV-EETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
+.+.++|||+|||+++|+++|+++|++||.| ..|+|+.++ +++++|||||+|.+.++|++||+.++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 5678999999999999999999999999999 899999999 99999999999999999999999966889999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+..+...
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9766533
No 100
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=128.08 Aligned_cols=81 Identities=27% Similarity=0.441 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
.+...++|||+|||+++++++|+++|++||+|.+|+|+.++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 35678999999999999999999999999999999999998 59999999999999999999999755 78999999999
Q ss_pred ecc
Q 038933 81 KAI 83 (347)
Q Consensus 81 ~a~ 83 (347)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 101
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=133.66 Aligned_cols=86 Identities=34% Similarity=0.682 Sum_probs=80.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.++..|+|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 45578999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCCC
Q 038933 186 HPKDRI 191 (347)
Q Consensus 186 ~~~~~~ 191 (347)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887653
No 102
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=130.70 Aligned_cols=87 Identities=29% Similarity=0.489 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhcc-CCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ce-EeCeEee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQ-YGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HV-ILGKEVE 78 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~-~~gr~i~ 78 (347)
++...++|||+|||+++|+++|+++|++ ||.|.+|+|+.++ +++++|||||+|.+.++|++|++.++ .. +.|++|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4567899999999999999999999999 9999999999999 99999999999999999999999866 56 8999999
Q ss_pred eeecccCCCcc
Q 038933 79 VKKAIPKGHKL 89 (347)
Q Consensus 79 v~~a~~~~~~~ 89 (347)
|.++.++....
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99997665443
No 103
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=136.96 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=78.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCcee-EeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTV-TDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.| ..|+|+.++ +++++|||||+|.+.++|++||++++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999999999999999999999 889999998 8999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987663
No 104
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=129.52 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeE-EEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeE----
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVE-ETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKE---- 76 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~-~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~---- 76 (347)
....++|||+|||+++++++|+++|++||+|. +|++++++.+++++|||||+|.+.++|++|++.++ ..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 46789999999999999999999999999999 99999999999999999999999999999999865 7899998
Q ss_pred eeeeecccC
Q 038933 77 VEVKKAIPK 85 (347)
Q Consensus 77 i~v~~a~~~ 85 (347)
|.|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998654
No 105
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=127.03 Aligned_cols=76 Identities=42% Similarity=0.741 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
++|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|.+.++|++|++.++..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999999888899999999986
No 106
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-18 Score=132.63 Aligned_cols=85 Identities=38% Similarity=0.660 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..+.++|||+|||+++|+++|+++|++||+|..|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999999999899999999999999999999998755 688999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976554
No 107
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=132.35 Aligned_cols=87 Identities=24% Similarity=0.384 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEec-CCCCCcceEEEEEEcchhHHHHHHHhc--CceEeCeEee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRS-RLTGHGRGFGFVIFTKISMAEDALQHK--HHVILGKEVE 78 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~tg~~kG~aFVeF~~~~~a~~Al~~~--~~~~~gr~i~ 78 (347)
+....++|||+|||+++|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|++|++.+ +..|.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4567899999999999999999999999999999999999 789999999999999999999999987 4789999999
Q ss_pred eeecccCCCc
Q 038933 79 VKKAIPKGHK 88 (347)
Q Consensus 79 v~~a~~~~~~ 88 (347)
|.++.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999776443
No 108
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.4e-17 Score=127.30 Aligned_cols=84 Identities=21% Similarity=0.450 Sum_probs=78.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~ 186 (347)
++++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999997 59999999999999998
Q ss_pred CCCCC
Q 038933 187 PKDRI 191 (347)
Q Consensus 187 ~~~~~ 191 (347)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87643
No 109
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=132.46 Aligned_cols=83 Identities=29% Similarity=0.516 Sum_probs=77.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
...++|||+|||+++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|++. ++..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999998 899999999999999999999985 999999999999999
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87554
No 110
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=6.6e-18 Score=134.14 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+..+.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999998899999999999999999999999865 78999999999
Q ss_pred ec
Q 038933 81 KA 82 (347)
Q Consensus 81 ~a 82 (347)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 111
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=9e-18 Score=131.62 Aligned_cols=87 Identities=33% Similarity=0.601 Sum_probs=78.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEe
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~ 184 (347)
.....++|||+|||+++|+++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++..+..|+|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 112
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-17 Score=129.34 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4567899999999999999999999999999999999998 79999999999999999999999755 789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 86543
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=8.7e-18 Score=131.74 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467889999999999999999999999999999999998899999999999999999999999755 789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97654
No 114
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.2e-17 Score=129.91 Aligned_cols=87 Identities=25% Similarity=0.494 Sum_probs=79.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCcee---CCeE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKL---KYKM 179 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i---~g~~ 179 (347)
......++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++ +++..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345667899999999999999999999999999999999999999999999999999999999998 588887 8999
Q ss_pred EEEEecCCCCC
Q 038933 180 VEVKRSHPKDR 190 (347)
Q Consensus 180 i~v~~a~~~~~ 190 (347)
|.|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 115
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1e-17 Score=130.13 Aligned_cols=85 Identities=27% Similarity=0.441 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeC---eEee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILG---KEVE 78 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~g---r~i~ 78 (347)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.++ ..+.| ++|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3568999999999999999999999999999999999998 89999999999999999999999866 56777 9999
Q ss_pred eeecccCCCc
Q 038933 79 VKKAIPKGHK 88 (347)
Q Consensus 79 v~~a~~~~~~ 88 (347)
|.++..+...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999766543
No 116
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=125.77 Aligned_cols=83 Identities=20% Similarity=0.440 Sum_probs=77.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999997 5999999999999
Q ss_pred EecC
Q 038933 183 KRSH 186 (347)
Q Consensus 183 ~~a~ 186 (347)
.++.
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 117
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=7.2e-18 Score=135.50 Aligned_cols=86 Identities=16% Similarity=0.351 Sum_probs=79.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999997 59999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9977654
No 118
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=132.29 Aligned_cols=84 Identities=24% Similarity=0.517 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
.+...++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999999998899999999999999999999998755 78999999999
Q ss_pred ecccC
Q 038933 81 KAIPK 85 (347)
Q Consensus 81 ~a~~~ 85 (347)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98765
No 119
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=4.1e-18 Score=132.66 Aligned_cols=86 Identities=24% Similarity=0.480 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE---eCeEe
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI---LGKEV 77 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~---~gr~i 77 (347)
++.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++.++ ..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 46678999999999999999999999999999999999999899999999999999999999999866 466 88999
Q ss_pred eeeecccCCC
Q 038933 78 EVKKAIPKGH 87 (347)
Q Consensus 78 ~v~~a~~~~~ 87 (347)
.|.++..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999976543
No 120
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.4e-17 Score=124.23 Aligned_cols=80 Identities=25% Similarity=0.501 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+++++++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|++|++ .++..++|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999998899999999999999999999997 5999999999999987
Q ss_pred C
Q 038933 186 H 186 (347)
Q Consensus 186 ~ 186 (347)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=128.44 Aligned_cols=88 Identities=22% Similarity=0.433 Sum_probs=80.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeeccccc-CCCCCceeEEEEEEcChHHHHHHHHh--CCceeCCeEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICD-KETGRPRGFGFITFDSEDAANNVLQT--RFHKLKYKMV 180 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~-~~~~~~~G~afV~F~~~e~a~~Al~~--~~~~i~g~~i 180 (347)
......++|||+|||+++|+++|+++|++||.|..|.|+.+ +.+++++|||||+|.+.++|++|++. ++..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34466789999999999999999999999999999999999 78899999999999999999999984 8999999999
Q ss_pred EEEecCCCCCC
Q 038933 181 EVKRSHPKDRI 191 (347)
Q Consensus 181 ~v~~a~~~~~~ 191 (347)
.|.++.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887653
No 122
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=130.18 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=79.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhc-CceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCce-eCCeEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFES-FGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHK-LKYKMVE 181 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~-i~g~~i~ 181 (347)
...+..+|||+|||+++|+++|+++|++ ||.|.+|.|+.++ +++++|||||+|.+.++|++|++. ++.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 899999999999999999999994 8888 9999999
Q ss_pred EEecCCCCCCC
Q 038933 182 VKRSHPKDRID 192 (347)
Q Consensus 182 v~~a~~~~~~~ 192 (347)
|.++.++....
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99998766543
No 123
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.5e-17 Score=127.13 Aligned_cols=85 Identities=24% Similarity=0.299 Sum_probs=77.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999997 49999999999999999999999 59999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9876544
No 124
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=1.5e-18 Score=133.84 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCC------CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeC-
Q 038933 3 PVSLRKLFVGGVSR------ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILG- 74 (347)
Q Consensus 3 ~~~~r~l~V~nLp~------~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~g- 74 (347)
+...++|||+|||+ ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|++.++ ..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 44578999999999 99999999999999999999999999899999999999999999999998765 78898
Q ss_pred eEeeeeecccCC
Q 038933 75 KEVEVKKAIPKG 86 (347)
Q Consensus 75 r~i~v~~a~~~~ 86 (347)
+.|.|.++.++.
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999997643
No 125
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=127.51 Aligned_cols=85 Identities=21% Similarity=0.393 Sum_probs=78.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCC---CCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKE---TGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~---~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
.+.++|||+|||+++|+++|+++|++||.|..|.++.++. +++++|||||+|.+.++|++|++. ++..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999876 669999999999999999999995 999999999999
Q ss_pred EecCCCCCC
Q 038933 183 KRSHPKDRI 191 (347)
Q Consensus 183 ~~a~~~~~~ 191 (347)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 126
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.6e-18 Score=129.88 Aligned_cols=86 Identities=29% Similarity=0.597 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999996 49999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 127
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.8e-18 Score=133.02 Aligned_cols=84 Identities=38% Similarity=0.756 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
..++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||+.++..|.|++|.|.++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 45899999999999999999999999999999999999899999999999999999999999966889999999999977
Q ss_pred CCCc
Q 038933 85 KGHK 88 (347)
Q Consensus 85 ~~~~ 88 (347)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 6543
No 128
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.6e-18 Score=132.72 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeE--------EEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVE--------ETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI 72 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~ 72 (347)
+....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++|++.++ ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 69999998899999999999999999999999755 789
Q ss_pred eCeEeeeeecccCCCc
Q 038933 73 LGKEVEVKKAIPKGHK 88 (347)
Q Consensus 73 ~gr~i~v~~a~~~~~~ 88 (347)
.|++|.|.++..+...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999766543
No 129
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=4.6e-18 Score=137.40 Aligned_cols=85 Identities=32% Similarity=0.465 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++.+.++|||+|||+++|+++|+++|++||+|..|++++++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999999755 78999999999
Q ss_pred ecccCC
Q 038933 81 KAIPKG 86 (347)
Q Consensus 81 ~a~~~~ 86 (347)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997654
No 130
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=135.75 Aligned_cols=87 Identities=34% Similarity=0.528 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++...++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45667999999999999999999999999999999999999899999999999999999999999865 68999999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++..+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99776544
No 131
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=127.84 Aligned_cols=85 Identities=31% Similarity=0.415 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+....++|||+|||+++|+++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4567899999999999999999999999999999999998633 68999999999999999999755 78999999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99775543
No 132
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=2.6e-18 Score=137.77 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeE--EEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVE--ETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVK 80 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~--~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~ 80 (347)
+...++|||+|||+++|+++|+++|++| .|. +|+|+.++. |+++|||||+|.++++|++||+.++..|.||+|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 4567899999999999999999999999 676 899999985 999999999999999999999988888999999999
Q ss_pred ecccCC
Q 038933 81 KAIPKG 86 (347)
Q Consensus 81 ~a~~~~ 86 (347)
++..++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 133
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=127.49 Aligned_cols=85 Identities=28% Similarity=0.488 Sum_probs=78.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.+ +++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456889999999999999999999999999999999988 79999999999999999999998 49999999999999
Q ss_pred ecCCCCCC
Q 038933 184 RSHPKDRI 191 (347)
Q Consensus 184 ~a~~~~~~ 191 (347)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99887654
No 134
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=129.40 Aligned_cols=87 Identities=20% Similarity=0.390 Sum_probs=80.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeE--------eecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCcee
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVT--------DAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKL 175 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~--------~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i 175 (347)
.....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++|++ +++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999998 69999999999999999999999999999998 499999
Q ss_pred CCeEEEEEecCCCCCC
Q 038933 176 KYKMVEVKRSHPKDRI 191 (347)
Q Consensus 176 ~g~~i~v~~a~~~~~~ 191 (347)
+|+.|.|.++.++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876553
No 135
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=9.7e-18 Score=139.89 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCC--CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYG--TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.++ ..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999999999999999999999999999999965 789999999999
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 136
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=8.6e-18 Score=129.23 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEE--------EEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEE--------TLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI 72 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~ 72 (347)
.+...++|||+|||+++|+++|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|++.++ ..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3567899999999999999999999999999999 9999998899999999999999999999999755 789
Q ss_pred eCeEeeeeec
Q 038933 73 LGKEVEVKKA 82 (347)
Q Consensus 73 ~gr~i~v~~a 82 (347)
.|++|.|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999987
No 137
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=125.56 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
++...++|||+|||+++|+++|+++|++| .|.+|+|+++ .+++++|||||+|.+.++|++|++.++..|.|++|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEE
Confidence 35678999999999999999999999999 9999999999 599999999999999999999999334789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97653
No 138
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=126.87 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++...++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|++|++.++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356789999999999999999999999999999999999863 388999999999999999999755 78999999999
Q ss_pred ecccCCCc
Q 038933 81 KAIPKGHK 88 (347)
Q Consensus 81 ~a~~~~~~ 88 (347)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99776544
No 139
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.5e-17 Score=125.03 Aligned_cols=81 Identities=23% Similarity=0.556 Sum_probs=76.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~ 187 (347)
..++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|++|+.+++..++|+.|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46799999999999999999999999999999999999899999999999999999999996699999999999999876
Q ss_pred C
Q 038933 188 K 188 (347)
Q Consensus 188 ~ 188 (347)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.6e-18 Score=134.24 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|+..++..|.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 34689999999999999999999999999999999999988999999999999999999999445588999999999997
Q ss_pred cCC
Q 038933 84 PKG 86 (347)
Q Consensus 84 ~~~ 86 (347)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 141
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=4.8e-18 Score=135.14 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCC---eEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGT---VEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v 79 (347)
..+.++|||+|||+++|+++|+++|++||. |..|+|+.++. ++++|||||+|.+.++|++||+.++..|.||.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 456789999999999999999999999998 89999999985 99999999999999999999996568899999999
Q ss_pred eecccCC
Q 038933 80 KKAIPKG 86 (347)
Q Consensus 80 ~~a~~~~ 86 (347)
.++..++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986654
No 142
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=2.5e-18 Score=125.22 Aligned_cols=75 Identities=40% Similarity=0.699 Sum_probs=71.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.++..+.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999996668899999999875
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=4.8e-18 Score=123.68 Aligned_cols=75 Identities=52% Similarity=0.909 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 111 KIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 111 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
+|||+|||+++|+++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|++|+++++..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999998999999999999999999999999999999999999875
No 144
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=129.69 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
.....+|||+|||+++|+++|+++|++| .|.+|.|+.++. ++++|||||+|.+.++|++|+++++..|+||.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 899999999976 99999999999999999999988999999999999998
Q ss_pred CCCC
Q 038933 186 HPKD 189 (347)
Q Consensus 186 ~~~~ 189 (347)
.+++
T Consensus 91 ~~~~ 94 (109)
T 2dnn_A 91 TERQ 94 (109)
T ss_dssp CHHH
T ss_pred Cccc
Confidence 7654
No 145
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=2e-17 Score=130.88 Aligned_cols=80 Identities=25% Similarity=0.543 Sum_probs=73.9
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~ 187 (347)
..+|||+|||+++|+++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|++. ++..|+|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999886 55899999999999999999975 99999999999999987
Q ss_pred CCC
Q 038933 188 KDR 190 (347)
Q Consensus 188 ~~~ 190 (347)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 146
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=5.5e-18 Score=129.16 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 456899999999999999999999999999999999988899999999999999999999999755 7899999999987
Q ss_pred c
Q 038933 83 I 83 (347)
Q Consensus 83 ~ 83 (347)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 147
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-18 Score=138.20 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCe----EEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTV----EETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVE 78 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v----~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~ 78 (347)
..+.++|||+|||+++|+++|+++|++||+| ..|+|+.++ +|+++|||||+|.+.++|++||+.++..|.+|+|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999875 689999996 99999999999999999999999877889999999
Q ss_pred eeecccCCC
Q 038933 79 VKKAIPKGH 87 (347)
Q Consensus 79 v~~a~~~~~ 87 (347)
|..+..++.
T Consensus 99 V~~a~~~e~ 107 (123)
T 2dha_A 99 LFRSTAAEV 107 (123)
T ss_dssp CEEECHHHH
T ss_pred EEECCHHHH
Confidence 999865543
No 148
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=125.31 Aligned_cols=82 Identities=26% Similarity=0.485 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCC-cceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGH-GRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~-~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
...++|||+|||+++|+++|+++|++||.|.+++++.++.++. ++|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999887666 89999999999999999999754 789999999999
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.3e-17 Score=128.60 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999999999999 99999999999999999999999855 789999999998
Q ss_pred cc
Q 038933 82 AI 83 (347)
Q Consensus 82 a~ 83 (347)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 150
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-18 Score=126.93 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.+.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4578999999999999999999999999999999999998899999999999999999999999765 678899888876
Q ss_pred cc
Q 038933 82 AI 83 (347)
Q Consensus 82 a~ 83 (347)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 151
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=2.6e-18 Score=129.84 Aligned_cols=82 Identities=16% Similarity=0.332 Sum_probs=70.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCc--eeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFG--TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~ 186 (347)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999997 59999999999999998
Q ss_pred CCCCC
Q 038933 187 PKDRI 191 (347)
Q Consensus 187 ~~~~~ 191 (347)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 152
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=127.02 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCc---eEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHH---VILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~---~~~gr~i~v 79 (347)
..++++|||+|||+++|+++|+++|++||.|.+|+++++ ||+|||+|++.++|++|++.++. .+.||+|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 357899999999999999999999999999999999864 48999999999999999998652 478999999
Q ss_pred eecccCC
Q 038933 80 KKAIPKG 86 (347)
Q Consensus 80 ~~a~~~~ 86 (347)
.++..++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9997654
No 153
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=2.3e-18 Score=125.39 Aligned_cols=75 Identities=36% Similarity=0.583 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+|||+|||+++|+++|+++|++||+|.+++++.++.+++++|||||+|.+.++|++|++.++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999998999999999999999999999998778899999999875
No 154
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.4e-18 Score=128.94 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999999988899988899999999999999999999998866 789999999999
Q ss_pred ccc
Q 038933 82 AIP 84 (347)
Q Consensus 82 a~~ 84 (347)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 155
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=4.2e-17 Score=126.63 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=78.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCC---eEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKY---KMVE 181 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g---~~i~ 181 (347)
....++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++ +++..+.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999997 69999999999999999999998 48888888 9999
Q ss_pred EEecCCCCCC
Q 038933 182 VKRSHPKDRI 191 (347)
Q Consensus 182 v~~a~~~~~~ 191 (347)
|.++.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887654
No 156
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=130.60 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=75.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecC
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~ 186 (347)
...++|||+|||+++|+++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|+.+++..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4578999999999999999999999999999999999987 999999999999999999999988999999999999875
Q ss_pred C
Q 038933 187 P 187 (347)
Q Consensus 187 ~ 187 (347)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 157
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3e-17 Score=128.67 Aligned_cols=86 Identities=15% Similarity=0.322 Sum_probs=79.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998 59999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9977543
No 158
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.1e-18 Score=132.40 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
+.++|||+|||+++|+++|+++|++| .|.+|+|+.++ +|+++|||||+|.+.++|++||+.++..|.||.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 35689999999999999999999999 89999999998 59999999999999999999997666889999999998865
Q ss_pred CC
Q 038933 85 KG 86 (347)
Q Consensus 85 ~~ 86 (347)
+.
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 159
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.1e-17 Score=124.32 Aligned_cols=87 Identities=20% Similarity=0.515 Sum_probs=78.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
......++|||+|||+++|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|++. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456678999999999999999999999999999999998864 3899999999999999999984 999999999999
Q ss_pred EecCCCCCCC
Q 038933 183 KRSHPKDRID 192 (347)
Q Consensus 183 ~~a~~~~~~~ 192 (347)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9998876543
No 160
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=125.68 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++. ++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35578999999999999999999999999999999999999999999999999999999999974 88999999999999
Q ss_pred cCCC
Q 038933 185 SHPK 188 (347)
Q Consensus 185 a~~~ 188 (347)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 161
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=5.5e-17 Score=128.75 Aligned_cols=83 Identities=27% Similarity=0.442 Sum_probs=77.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
....+.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++. ++..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999985 899999999999
Q ss_pred EecC
Q 038933 183 KRSH 186 (347)
Q Consensus 183 ~~a~ 186 (347)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9863
No 162
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.2e-17 Score=124.58 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=77.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
......++|||+|||+++|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3456688999999999999999999999999999999998864 368999999999999999998 5999999999999
Q ss_pred EecCCCCCC
Q 038933 183 KRSHPKDRI 191 (347)
Q Consensus 183 ~~a~~~~~~ 191 (347)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999886543
No 163
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=128.55 Aligned_cols=84 Identities=17% Similarity=0.364 Sum_probs=78.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
....++|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999984 99999999999999
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97654
No 164
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=3.9e-17 Score=136.24 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||+|..|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.|++|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467999999999999999999999999999999999999899999999999999999999999865 7899999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 165
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=4.7e-18 Score=138.31 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCC---eEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGT---VEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v 79 (347)
+.+.++|||+|||+++|+++|+++|++||. |.+|+|++++. ++++|||||+|.+.++|++||+.++..|.||+|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 456789999999999999999999999999 89999999985 99999999999999999999994447889999999
Q ss_pred eecccCC
Q 038933 80 KKAIPKG 86 (347)
Q Consensus 80 ~~a~~~~ 86 (347)
.++..++
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9986544
No 166
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=129.53 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCC-eEEEEEE-ecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEe
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGT-VEETLII-RSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEV 77 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~-~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i 77 (347)
..+.++|||+|||+++|+++|+++|++||. |.+|.++ .++.+++++|||||+|.+.++|++|++.++ ..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356789999999999999999999999998 9999998 788889999999999999999999999863 68999999
Q ss_pred eeeecccCCCc
Q 038933 78 EVKKAIPKGHK 88 (347)
Q Consensus 78 ~v~~a~~~~~~ 88 (347)
.|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 167
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-18 Score=131.68 Aligned_cols=85 Identities=31% Similarity=0.530 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+.++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 457899999999999999999999999999999999998899999999999999999999999765 7899999999999
Q ss_pred ccCCCc
Q 038933 83 IPKGHK 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 776543
No 168
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=123.15 Aligned_cols=83 Identities=14% Similarity=0.354 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
.....+|||+|||+++|+++|+++|++| .|..|.|+++ .+++++|+|||+|.+.++|++|+++++..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3557899999999999999999999999 9999999999 7799999999999999999999999999999999999999
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.++..
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87643
No 169
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=127.92 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEee
Q 038933 3 PVSLRKLFVGGVSR-ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEVE 78 (347)
Q Consensus 3 ~~~~r~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i~ 78 (347)
..+.++|||+|||+ ++|++||+++|++||.|.+|+|++++ |||||+|.+.++|++|++.++ ..+.||+|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45789999999999 99999999999999999999998765 799999999999999999754 469999999
Q ss_pred eeecccCC
Q 038933 79 VKKAIPKG 86 (347)
Q Consensus 79 v~~a~~~~ 86 (347)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99997544
No 170
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=126.46 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeE-eecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeE----
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVT-DAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKM---- 179 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~-~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~---- 179 (347)
....++|||+|||+++++++|+++|++||.|. ++++++++.+++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35678999999999999999999999999999 99999999999999999999999999999999 4999999999
Q ss_pred EEEEecCCCC
Q 038933 180 VEVKRSHPKD 189 (347)
Q Consensus 180 i~v~~a~~~~ 189 (347)
|+|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987653
No 171
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=128.15 Aligned_cols=85 Identities=28% Similarity=0.582 Sum_probs=79.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++ .++..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998 59999999999999
Q ss_pred ecCCCC
Q 038933 184 RSHPKD 189 (347)
Q Consensus 184 ~a~~~~ 189 (347)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998753
No 172
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-18 Score=136.40 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEE--EEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-c----eEeCe
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEE--TLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-H----VILGK 75 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~--v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~----~~~gr 75 (347)
....++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|++|+..++ . .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999977 99999999999999999999999 9999999977 5 78999
Q ss_pred EeeeeecccCCCc
Q 038933 76 EVEVKKAIPKGHK 88 (347)
Q Consensus 76 ~i~v~~a~~~~~~ 88 (347)
.|.|.++.++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999775443
No 173
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=125.82 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=77.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe--------ecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCce
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD--------APVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHK 174 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~ 174 (347)
....+..+|||+|||+++|+++|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|++ +++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34566889999999999999999999999999999 9999999999999999999999999999998 59999
Q ss_pred eCCeEEEEEecC
Q 038933 175 LKYKMVEVKRSH 186 (347)
Q Consensus 175 i~g~~i~v~~a~ 186 (347)
++|+.|+|.+|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 174
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=123.97 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++. ++++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999999986 9999999999999999999999 59999999999999
Q ss_pred ecCC
Q 038933 184 RSHP 187 (347)
Q Consensus 184 ~a~~ 187 (347)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8753
No 175
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=7.7e-18 Score=129.88 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=77.3
Q ss_pred CcceEEEcCCCC------CCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCC-eE
Q 038933 108 NTKKIFVGGLPL------DIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKY-KM 179 (347)
Q Consensus 108 ~~~~l~V~nLp~------~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g-~~ 179 (347)
..++|||+|||+ ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|++ +++..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999997 59999999 99
Q ss_pred EEEEecCCCC
Q 038933 180 VEVKRSHPKD 189 (347)
Q Consensus 180 i~v~~a~~~~ 189 (347)
|.|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987653
No 176
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=132.02 Aligned_cols=85 Identities=19% Similarity=0.387 Sum_probs=79.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+.+++..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34578999999999999999999999999999999999999999999999999999999999966999999999999998
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 76543
No 177
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=125.11 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc---CceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK---HHVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~---~~~~~gr~i~v 79 (347)
..+.++|||+|||+++|+++|+++|++||.|.+|.++++ ||||||+|.+.++|++|++.+ ...+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456799999999999999999999999999999999875 489999999999999999974 35799999999
Q ss_pred eecccCCCcc
Q 038933 80 KKAIPKGHKL 89 (347)
Q Consensus 80 ~~a~~~~~~~ 89 (347)
.++..+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9997765543
No 178
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=7.4e-18 Score=129.95 Aligned_cols=82 Identities=18% Similarity=0.335 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecC-CCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSR-LTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~ 81 (347)
....++|||+|||+++++++|+++|++|| |.+|+|+.++ .+++++|||||+|.+.++|++|+...+..+.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45679999999999999999999999999 9999999998 689999999999999999999994455789999999999
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
+.++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8654
No 179
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=122.78 Aligned_cols=82 Identities=12% Similarity=0.335 Sum_probs=76.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCC-ceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGR-PRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~-~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
..++|||+|||+++|+++|+++|++||.|.++.++.++.++. ++|+|||+|.+.++|++|++. ++..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999987766 999999999999999999994 999999999999999
Q ss_pred CCCC
Q 038933 186 HPKD 189 (347)
Q Consensus 186 ~~~~ 189 (347)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 180
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=3.5e-17 Score=123.91 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++++++|+++|++||.|..|+++++ +++++|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467899999999999999999999999999999999984 78999999999999999999999855 789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87654
No 181
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.1e-17 Score=132.98 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=77.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCce---eEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGT---VTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEV 182 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v 182 (347)
....++|||+|||+++|+++|+++|++||. |..|+|+.++. ++++|||||+|.+.++|++|+++++..|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 455789999999999999999999999999 89999999987 99999999999999999999999999999999999
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
.++..++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987655
No 182
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=1.9e-17 Score=133.00 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999998755 789999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9776544
No 183
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=131.21 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEVE 78 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i~ 78 (347)
+..+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.++ ..+.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3467899999999999999999999999999999999986 4899999999999999999764 468999999
Q ss_pred eeecccCCCccc
Q 038933 79 VKKAIPKGHKLE 90 (347)
Q Consensus 79 v~~a~~~~~~~~ 90 (347)
|.++..+.....
T Consensus 101 V~~a~~k~~~~~ 112 (119)
T 2ad9_A 101 IQFSNHKELKTD 112 (119)
T ss_dssp EEECSSSSCCCC
T ss_pred EEEccCCCCCcc
Confidence 999977665543
No 184
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.4e-17 Score=126.59 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++...++|||+|||+++|+++|+++|++||.|..|+|.. +++++|||||+|.+.++|++|++.++ ..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 456789999999999999999999999999999999965 45688999999999999999998765 78999999999
Q ss_pred ecccCCC
Q 038933 81 KAIPKGH 87 (347)
Q Consensus 81 ~a~~~~~ 87 (347)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9976543
No 185
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=2.7e-17 Score=125.33 Aligned_cols=81 Identities=17% Similarity=0.325 Sum_probs=74.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
....+|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999998 5999999999999987
Q ss_pred CC
Q 038933 186 HP 187 (347)
Q Consensus 186 ~~ 187 (347)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 186
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=7.3e-18 Score=122.68 Aligned_cols=75 Identities=37% Similarity=0.735 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 111 KIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 111 ~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
+|||+|||+++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999999889999999999875
No 187
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=4.8e-17 Score=130.27 Aligned_cols=83 Identities=18% Similarity=0.516 Sum_probs=77.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecC
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~ 186 (347)
...++|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|+++++..|+|+.|.|.++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 34689999999999999999999999999999999999989999999999999999999999669999999999999987
Q ss_pred CCC
Q 038933 187 PKD 189 (347)
Q Consensus 187 ~~~ 189 (347)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 188
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=122.55 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh---CCceeCCeEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT---RFHKLKYKMVE 181 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~---~~~~i~g~~i~ 181 (347)
...+.++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|++.++|++|++. ++..+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988865 68999999999999999984 67889999999
Q ss_pred EEecCCCCCCC
Q 038933 182 VKRSHPKDRID 192 (347)
Q Consensus 182 v~~a~~~~~~~ 192 (347)
|.++.++....
T Consensus 85 V~~a~~~~~~~ 95 (101)
T 2cq1_A 85 IQYSNHKELKT 95 (101)
T ss_dssp EEECSCSSCCC
T ss_pred EEEcCcccCcC
Confidence 99998776543
No 189
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.5e-17 Score=133.03 Aligned_cols=86 Identities=24% Similarity=0.402 Sum_probs=79.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
....+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++ .++..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999999 4999999999999
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 190
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=2e-17 Score=127.88 Aligned_cols=83 Identities=31% Similarity=0.596 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+...++|||+|||+++|+++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++ .+..+.|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3457899999999999999999999999999999999999 99999999999999999999999 668999999999999
Q ss_pred ccCCC
Q 038933 83 IPKGH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 191
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=128.75 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH---HHhccCCCeEEEEEEecCCCC---CcceEEEEEEcchhHHHHHHHhcC-ceEeCe
Q 038933 3 PVSLRKLFVGGVSRETNEETLR---EYFSQYGTVEETLIIRSRLTG---HGRGFGFVIFTKISMAEDALQHKH-HVILGK 75 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~~tg---~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr 75 (347)
....++|||+|||+++++++|+ ++|++||+|..|+|++++.++ +++|||||+|.+.++|++|++.++ ..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999999987654 566999999999999999999855 789999
Q ss_pred EeeeeecccCC
Q 038933 76 EVEVKKAIPKG 86 (347)
Q Consensus 76 ~i~v~~a~~~~ 86 (347)
+|.|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999997765
No 192
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=126.50 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i~v 79 (347)
..+.++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.++ ..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356799999999999999999999999999999999875 4899999999999999999753 3589999999
Q ss_pred eecccCCCc
Q 038933 80 KKAIPKGHK 88 (347)
Q Consensus 80 ~~a~~~~~~ 88 (347)
.++..+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999776544
No 193
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=4.4e-17 Score=130.49 Aligned_cols=81 Identities=21% Similarity=0.479 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.++..|.|+.|.|.++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999998899999999999999999999994455789999999999865
Q ss_pred C
Q 038933 85 K 85 (347)
Q Consensus 85 ~ 85 (347)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=132.25 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=78.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe--ecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCc----eeC
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD--APVICDKETGRPRGFGFITFDSEDAANNVLQT-RFH----KLK 176 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~----~i~ 176 (347)
......++|||+|||+++|+++|+++|++||.|.. |+|++|+.+++++|||||+|.+. +|++|++. ++. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34466789999999999999999999999999976 99999999999999999999999 99999985 888 999
Q ss_pred CeEEEEEecCCCCC
Q 038933 177 YKMVEVKRSHPKDR 190 (347)
Q Consensus 177 g~~i~v~~a~~~~~ 190 (347)
|+.|.|.++.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987644
No 195
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-16 Score=123.90 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=74.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
......++|||+|||+++|+++|+++|++||.|..|.|..+ ++++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999654 5689999999999999999996 5999999999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++.++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99977543
No 196
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=122.54 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFK----SYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMV 180 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i 180 (347)
.....+|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|++|++ +++..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998765 7899999999999999999 59999999999
Q ss_pred EEEecCCCCC
Q 038933 181 EVKRSHPKDR 190 (347)
Q Consensus 181 ~v~~a~~~~~ 190 (347)
+|.++.++..
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 197
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=123.16 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCC-----e
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKY-----K 178 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g-----~ 178 (347)
......+|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+. ++..|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999876 7999999999999999994 9999999 9
Q ss_pred EEEEEecCCCCCC
Q 038933 179 MVEVKRSHPKDRI 191 (347)
Q Consensus 179 ~i~v~~a~~~~~~ 191 (347)
.|.|.++.++...
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999886543
No 198
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=1.2e-17 Score=135.82 Aligned_cols=84 Identities=21% Similarity=0.352 Sum_probs=77.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCce---eEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGT---VTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVE 181 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~ 181 (347)
......+|||+|||+++|+++|+++|++||. |.+|+|++++. ++++|||||+|.+.++|++|+++++..|+|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 3455789999999999999999999999999 88999999987 9999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 038933 182 VKRSHPKD 189 (347)
Q Consensus 182 v~~a~~~~ 189 (347)
|.++.+++
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99987654
No 199
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=124.13 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEee
Q 038933 4 VSLRKLFVGGVSRETNEETLR----EYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVE 78 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~ 78 (347)
.+.++|||+|||+++++++|+ ++|++||+|.+|+|+.++.+ +|||||+|.+.++|++|++.++ ..+.|++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 457899999999999999999 99999999999999998855 7899999999999999999765 689999999
Q ss_pred eeecccCC
Q 038933 79 VKKAIPKG 86 (347)
Q Consensus 79 v~~a~~~~ 86 (347)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99996543
No 200
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.1e-16 Score=124.74 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.++ +++++|+|||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999995 9999999999999
Q ss_pred ecC
Q 038933 184 RSH 186 (347)
Q Consensus 184 ~a~ 186 (347)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 201
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=127.63 Aligned_cols=84 Identities=21% Similarity=0.438 Sum_probs=74.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccC-CCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDK-ETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~-~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++|+++|+++|++|| |.+|.|+.++ .+++++|||||+|.+.++|++|+.+++..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345678999999999999999999999999 9999999998 68999999999999999999999779999999999999
Q ss_pred ecCCCC
Q 038933 184 RSHPKD 189 (347)
Q Consensus 184 ~a~~~~ 189 (347)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 997753
No 202
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=131.92 Aligned_cols=80 Identities=28% Similarity=0.488 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||+|..|++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4578999999999999999999999999999999999998899999999999999999999999876 689999999987
Q ss_pred c
Q 038933 82 A 82 (347)
Q Consensus 82 a 82 (347)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 203
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-17 Score=126.07 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-C--CceeCCeEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-R--FHKLKYKMVEV 182 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~--~~~i~g~~i~v 182 (347)
+.+..+|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|++.++|++|++. + +..|+|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356789999999999999999999999999999999865 68999999999999999984 3 57899999999
Q ss_pred EecCCCCCCC
Q 038933 183 KRSHPKDRID 192 (347)
Q Consensus 183 ~~a~~~~~~~ 192 (347)
.++.++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998776543
No 204
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=135.64 Aligned_cols=82 Identities=16% Similarity=0.344 Sum_probs=76.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCc--eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFG--TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+.+++++|||||+|.+.++|++||+. ++..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999997 99999999999999
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 205
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=127.71 Aligned_cols=86 Identities=23% Similarity=0.562 Sum_probs=79.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3457899999999999999999999999999999999999899999999999999999999998 599999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9887654
No 206
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=124.57 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHH---HhhhcCceeEeecccccCCCC---CceeEEEEEEcChHHHHHHHHh-CCceeCCe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFK---SYFESFGTVTDAPVICDKETG---RPRGFGFITFDSEDAANNVLQT-RFHKLKYK 178 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~---~~F~~~G~v~~v~i~~~~~~~---~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~ 178 (347)
....++|||+|||+++++++|+ ++|++||.|.+|.|++++.++ +++|||||+|.+.++|++|++. ++..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457799999999999999999 999999999999999887754 5669999999999999999995 99999999
Q ss_pred EEEEEecCCCCC
Q 038933 179 MVEVKRSHPKDR 190 (347)
Q Consensus 179 ~i~v~~a~~~~~ 190 (347)
.|.|.++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988753
No 207
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-18 Score=131.50 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCC---eEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGT---VEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVE 78 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~ 78 (347)
+....++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+.++..|.||.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 4567889999999999999999999999988 89999999985 9999999999999999999999555788999999
Q ss_pred eeecccCC
Q 038933 79 VKKAIPKG 86 (347)
Q Consensus 79 v~~a~~~~ 86 (347)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987654
No 208
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.8e-18 Score=134.72 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
....++|||+|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||+.++..|.|++|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34568999999999999999999999999998866666666999999999999999999999995457899999999998
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
..+.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6644
No 209
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=8.2e-17 Score=128.97 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999999 99999999999999999999999755 6889999999999
Q ss_pred ccCCC
Q 038933 83 IPKGH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
.....
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 76543
No 210
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=132.14 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=78.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEe
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKR 184 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~ 184 (347)
......+|||+|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||++++..|+|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34556899999999999999999999999999998788887889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 211
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.69 E-value=6.6e-17 Score=134.96 Aligned_cols=83 Identities=35% Similarity=0.499 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999998899999999999999999999999865 6789999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.++.
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 212
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.7e-17 Score=135.07 Aligned_cols=84 Identities=35% Similarity=0.486 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999865 789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.+..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97654
No 213
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3e-16 Score=120.94 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=73.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++ +++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45668999999999999999999999999988 45555 568999999999999999999999 59999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 214
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=9.4e-18 Score=126.60 Aligned_cols=80 Identities=31% Similarity=0.566 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
.++|||+|||+++++++|+++|++||+|.+|++++++.+++++|||||+|.+.+ |++|+..++ ..+.|++|.|.++.+
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 378999999999999999999999999999999999989999999999999999 999999866 689999999999976
Q ss_pred CC
Q 038933 85 KG 86 (347)
Q Consensus 85 ~~ 86 (347)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 215
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.2e-16 Score=120.93 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=76.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|..+.++++ +++++|||||+|.+.++|++|++. ++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999874 689999999999999999999985 99999999999999
Q ss_pred cCCCCC
Q 038933 185 SHPKDR 190 (347)
Q Consensus 185 a~~~~~ 190 (347)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 216
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=2.3e-17 Score=132.29 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=74.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeE--eecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVT--DAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~--~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
.....+|||+|||+++|+++|+++|++| .|. +|+|++|+. ++++|||||+|.+.++|++|+++++..|+||.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3457889999999999999999999999 566 899999987 999999999999999999999988899999999999
Q ss_pred ecCCCC
Q 038933 184 RSHPKD 189 (347)
Q Consensus 184 ~a~~~~ 189 (347)
.+.+++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 217
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-17 Score=120.28 Aligned_cols=76 Identities=37% Similarity=0.670 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|++|++.....++|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 3799999999999999999999999999999999999999999999999999999999997449999999999986
No 218
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=132.95 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=75.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCcee----EeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTV----TDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEV 182 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v----~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v 182 (347)
....+|||+|||+++|+++|+++|++||.| ..|.|+.++ +++++|||||+|.+.++|++|+++++..|+++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 446799999999999999999999999975 689999884 799999999999999999999999999999999999
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
..+.+++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987655
No 219
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=123.41 Aligned_cols=81 Identities=23% Similarity=0.433 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+.+.++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4578999999999999999999999999976 56666 489999999999999999999999765 789999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 976643
No 220
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=123.91 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=77.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCce-eEeeccc-ccCCCCCceeEEEEEEcChHHHHHHHHh-C--CceeCCeEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGT-VTDAPVI-CDKETGRPRGFGFITFDSEDAANNVLQT-R--FHKLKYKMVE 181 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~-~~~~~~~~~G~afV~F~~~e~a~~Al~~-~--~~~i~g~~i~ 181 (347)
.+.++|||+|||+++|+++|+++|++||. |.++.++ .++.+++++|||||+|.+.++|++|++. + +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 8888899999999999999999999985 4 4899999999
Q ss_pred EEecCCCCCC
Q 038933 182 VKRSHPKDRI 191 (347)
Q Consensus 182 v~~a~~~~~~ 191 (347)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999877653
No 221
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1e-17 Score=136.76 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+...++|||+|||+++|+++|+++|++|| |.+|+|+.++ +++++|||||+|.+.++|++||+.++..|.||+|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 35678999999999999999999999999 6699999998 499999999999999999999965567899999999998
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 222
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=4.4e-16 Score=120.52 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34578999999999999999999999999999999873 4999999999999999994 99999999999999
Q ss_pred cCCCCCCC
Q 038933 185 SHPKDRID 192 (347)
Q Consensus 185 a~~~~~~~ 192 (347)
+.++....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 98876543
No 223
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=5.6e-17 Score=125.30 Aligned_cols=84 Identities=25% Similarity=0.604 Sum_probs=77.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
....++|||+|||+++|+++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3457899999999999999999999999999999999998 89999999999999999999999 889999999999999
Q ss_pred CCCCCC
Q 038933 186 HPKDRI 191 (347)
Q Consensus 186 ~~~~~~ 191 (347)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 876543
No 224
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.3e-17 Score=126.07 Aligned_cols=82 Identities=28% Similarity=0.515 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
+....++|||+|||+++|+++|+++|++||.|.+|+++.++ ++++|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999999986 3589999999999999999999755 78999999999
Q ss_pred ecccC
Q 038933 81 KAIPK 85 (347)
Q Consensus 81 ~a~~~ 85 (347)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98765
No 225
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=126.15 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE--------e
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI--------L 73 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~--------~ 73 (347)
+.+.++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|++|++.++ ..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4577999999999999999999999999999999999999 99999999999999999999999765 556 4
Q ss_pred CeEeeeeeccc
Q 038933 74 GKEVEVKKAIP 84 (347)
Q Consensus 74 gr~i~v~~a~~ 84 (347)
+++|.|.++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 77788888764
No 226
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-17 Score=126.52 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=76.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecC
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~ 186 (347)
....+|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++|+++++..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45789999999999999999999999999988 77778788999999999999999999999989999999999999998
Q ss_pred CCCC
Q 038933 187 PKDR 190 (347)
Q Consensus 187 ~~~~ 190 (347)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 227
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-16 Score=121.46 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeC-----eEe
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILG-----KEV 77 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~g-----r~i 77 (347)
...++|||+|||+++|+++|+++|++||+|..|+|+.+ |||||+|.+.++|++|++.++ ..|.| ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999986 799999999999999999866 78999 999
Q ss_pred eeeecccCCCc
Q 038933 78 EVKKAIPKGHK 88 (347)
Q Consensus 78 ~v~~a~~~~~~ 88 (347)
.|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999775543
No 228
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-16 Score=127.89 Aligned_cols=83 Identities=24% Similarity=0.492 Sum_probs=76.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEE
Q 038933 103 DDTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVE 181 (347)
Q Consensus 103 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~ 181 (347)
.....+.++|||+|||+++|+++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++. ++..|+|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999974 88999999999
Q ss_pred EEec
Q 038933 182 VKRS 185 (347)
Q Consensus 182 v~~a 185 (347)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 229
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.7e-16 Score=133.62 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++ ..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999998899999999999999999999999865 7899999999999
Q ss_pred ccCCCc
Q 038933 83 IPKGHK 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
..+...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 776543
No 230
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=124.30 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCC------cHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCe-E
Q 038933 5 SLRKLFVGGVSRET------NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGK-E 76 (347)
Q Consensus 5 ~~r~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr-~ 76 (347)
..++|||+|||+++ |+++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|++|++.++ ..+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 889999999999999999988 3589999999999999999999999866 688998 9
Q ss_pred eeeeecccCC
Q 038933 77 VEVKKAIPKG 86 (347)
Q Consensus 77 i~v~~a~~~~ 86 (347)
|.|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999986543
No 231
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=5.8e-17 Score=143.76 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCC--CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYG--TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..++|||+|||+++|+++|+++|++|| .|.+|+|++++.++++||||||+|.+.++|++||+.++ ..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999866 789999999999
Q ss_pred ccc
Q 038933 82 AIP 84 (347)
Q Consensus 82 a~~ 84 (347)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 853
No 232
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=120.14 Aligned_cols=84 Identities=31% Similarity=0.524 Sum_probs=75.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
....+.++|||+|||+++|+++|+++|++|+ .+.++.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999874 56777888889999999999999999999998 5999999999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 233
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=122.33 Aligned_cols=82 Identities=38% Similarity=0.519 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|||+++|+++|+++|++|+ .|+++.++.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 56789999999999999999999999773 68888888899999999999999999999999755 789999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 977654
No 234
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-17 Score=123.02 Aligned_cols=79 Identities=20% Similarity=0.470 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999999999999999999999999999998 4888999988876554
No 235
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-17 Score=129.24 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=77.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCce---eEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGT---VTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEV 182 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v 182 (347)
.....+|||+|||+++|+++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|++|+++++..|+|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 456789999999999999999999999998 89999999987 99999999999999999999999999999999999
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
.++.+++
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9988655
No 236
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.8e-16 Score=120.56 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh---CCceeCCeEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT---RFHKLKYKMVEV 182 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~---~~~~i~g~~i~v 182 (347)
..+.++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|++.++|++|++. +...|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998754 67999999999999999984 456799999999
Q ss_pred EecCCCCCC
Q 038933 183 KRSHPKDRI 191 (347)
Q Consensus 183 ~~a~~~~~~ 191 (347)
.++..+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999876543
No 237
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=5.5e-16 Score=124.12 Aligned_cols=86 Identities=19% Similarity=0.329 Sum_probs=79.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++ .++..|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999 59999999999999
Q ss_pred ecCCCCCC
Q 038933 184 RSHPKDRI 191 (347)
Q Consensus 184 ~a~~~~~~ 191 (347)
++.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876544
No 238
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=118.80 Aligned_cols=78 Identities=35% Similarity=0.599 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..+.++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 5678999999999999999999999999999999998 3799999999999999998766 689999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9765543
No 239
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1e-17 Score=129.25 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+...++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++|++.++..+.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 346789999999999999999999999999887 6677767899999999999999999999994447899999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 240
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=121.13 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=74.4
Q ss_pred CCcceEEEcCCCCCC------CHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCe-
Q 038933 107 INTKKIFVGGLPLDI------KEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYK- 178 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~- 178 (347)
...++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|++|+.. ++..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 446899999999999 789999999999999999988 46789999999999999999999995 99999998
Q ss_pred EEEEEecCCCCC
Q 038933 179 MVEVKRSHPKDR 190 (347)
Q Consensus 179 ~i~v~~a~~~~~ 190 (347)
.|.|.++...+.
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999976543
No 241
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=4.4e-17 Score=122.87 Aligned_cols=81 Identities=28% Similarity=0.616 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.+ |++|++. ++..++|+.|.|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 9999985 899999999999999876
Q ss_pred CCC
Q 038933 189 DRI 191 (347)
Q Consensus 189 ~~~ 191 (347)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 242
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.3e-16 Score=125.17 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEV 79 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v 79 (347)
.+...++|||+|||+++|+++|+++|++|| +|..+.+..+ +++|||||+|.+.++|++|++.++ ..+.|++|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 355678999999999999999999999999 8999888543 478999999999999999999866 7899999999
Q ss_pred eecccC
Q 038933 80 KKAIPK 85 (347)
Q Consensus 80 ~~a~~~ 85 (347)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998643
No 243
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=9.3e-17 Score=118.74 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=65.4
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCe-Ee
Q 038933 6 LRKLFVGGVSRET------NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGK-EV 77 (347)
Q Consensus 6 ~r~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr-~i 77 (347)
.++|||+|||+++ |+++|+++|++||+|.+|+++ +.+++++|||||+|.+.++|++|++.++ ..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 889999999999999999987 3489999999999999999999999866 678888 88
Q ss_pred ee
Q 038933 78 EV 79 (347)
Q Consensus 78 ~v 79 (347)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 244
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=122.57 Aligned_cols=84 Identities=20% Similarity=0.525 Sum_probs=76.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
......++|||+|||.++|+++|+++|++||.|.++.++.++ ++++|||||+|.+.++|++|++. ++..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999885 45899999999999999999994 999999999999
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
.++.++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998753
No 245
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-17 Score=126.41 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC---ceEeCeEee
Q 038933 3 PVSLRKLFVGGVSRE-TNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH---HVILGKEVE 78 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~---~~~~gr~i~ 78 (347)
....++|||+|||++ +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|++|++.++ ..+.||+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999998 999999999999999999999854 4899999999999999999753 468999999
Q ss_pred eeecccCCC
Q 038933 79 VKKAIPKGH 87 (347)
Q Consensus 79 v~~a~~~~~ 87 (347)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976543
No 246
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.3e-16 Score=118.59 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh---CCceeCCeEEEE
Q 038933 107 INTKKIFVGGLPL-DIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT---RFHKLKYKMVEV 182 (347)
Q Consensus 107 ~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~---~~~~i~g~~i~v 182 (347)
.+.++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|++.++|++|++. +...|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999865 36999999999999999984 356799999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++..+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986544
No 247
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=121.69 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|||+++|+++|+++|++||.|..|+++.+ +|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456889999999999999999999999999999999987 4899999999999999998855 789999999999
Q ss_pred cccCCCc
Q 038933 82 AIPKGHK 88 (347)
Q Consensus 82 a~~~~~~ 88 (347)
+.++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9776543
No 248
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=123.94 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-C--CceeCCeEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-R--FHKLKYKMVEV 182 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~--~~~i~g~~i~v 182 (347)
..+.++|||+|||+++|+++|+++|++||.|++|.|+++ +|||||+|++.++|++|++. + +..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 356789999999999999999999999999999999875 68999999999999999985 3 57899999999
Q ss_pred EecCCCCCCC
Q 038933 183 KRSHPKDRID 192 (347)
Q Consensus 183 ~~a~~~~~~~ 192 (347)
.++.++....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998876554
No 249
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=123.93 Aligned_cols=86 Identities=26% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999997665555445789999999999999999999985 99999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9887654
No 250
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.3e-16 Score=116.85 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeecc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAI 83 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~ 83 (347)
.+.-|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.++++|++|++.++ ..+.||+|.|+.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456799999999999999999999999999999976 46999999999999999999976 78999999999883
No 251
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.5e-18 Score=133.15 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEE--------EEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEE--------TLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI 72 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~ 72 (347)
+..+.++|||+|||+++++++|+++|++||.|.. |+++.++.+++++|||||+|.+.++|++|++.++ ..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999998 9999998899999999999999999999999755 789
Q ss_pred eCeEeeeeecccCCCc
Q 038933 73 LGKEVEVKKAIPKGHK 88 (347)
Q Consensus 73 ~gr~i~v~~a~~~~~~ 88 (347)
.|++|.|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999776544
No 252
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=3e-16 Score=116.26 Aligned_cols=73 Identities=10% Similarity=0.172 Sum_probs=68.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSH 186 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~ 186 (347)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++. |+..+.|+.|+|+.|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 366899999999999999999999999999999864 589999999999999999985 9999999999999985
No 253
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=116.34 Aligned_cols=78 Identities=28% Similarity=0.577 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|++|++ .++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567899999999999999999999999999999987 4699999999999999997 599999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876553
No 254
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=115.75 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc-C-ceEeCeEeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK-H-HVILGKEVEV 79 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~-~-~~~~gr~i~v 79 (347)
++...++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.+ + ..+.|++|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3567899999999999999999999999999999999975 489999999999999999975 5 7899999999
Q ss_pred eec
Q 038933 80 KKA 82 (347)
Q Consensus 80 ~~a 82 (347)
.++
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 255
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=116.44 Aligned_cols=80 Identities=26% Similarity=0.481 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
....++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++|++.++..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 4567899999999999999999999999999987 55655665 999999999999999994447899999999988
Q ss_pred ccCCC
Q 038933 83 IPKGH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 65543
No 256
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.1e-16 Score=120.87 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|||+++++++|+++|++||.|.++++.+ ++|||||+|.+.++|++|+..++ ..+.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 44578999999999999999999999999999999984 45899999999999999998855 789999999999
Q ss_pred ccc
Q 038933 82 AIP 84 (347)
Q Consensus 82 a~~ 84 (347)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 257
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=9.3e-16 Score=118.66 Aligned_cols=80 Identities=26% Similarity=0.465 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|++|++.++ ..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999998873 599999999999999999755 7899999999999
Q ss_pred ccCCCcccc
Q 038933 83 IPKGHKLEE 91 (347)
Q Consensus 83 ~~~~~~~~~ 91 (347)
.++......
T Consensus 81 ~~~~~~~~~ 89 (103)
T 2dgu_A 81 KPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCCcccchh
Confidence 776654433
No 258
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=114.78 Aligned_cols=78 Identities=19% Similarity=0.417 Sum_probs=71.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++|+++|+++|++||.|..+.++++ ||||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999998744 999999999999999974 9999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987654
No 259
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=116.82 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CC--ceeCCeEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RF--HKLKYKMVE 181 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~--~~i~g~~i~ 181 (347)
...++++|||+|||+++|+++|+++|++||.|+++.++++ ||+|||+|++.++|.+|++. ++ ..+.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3456889999999999999999999999999999998753 67999999999999999985 43 468999999
Q ss_pred EEecCCCC
Q 038933 182 VKRSHPKD 189 (347)
Q Consensus 182 v~~a~~~~ 189 (347)
|.++..++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 260
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=1.8e-16 Score=121.21 Aligned_cols=82 Identities=23% Similarity=0.450 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeE
Q 038933 2 EPVSLRKLFVGGVSRETNEETLR----EYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKE 76 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~ 76 (347)
+..+.++|||+|||+++++++|+ ++|++||.|..|+++. +++++|||||+|.+.++|++|++.++ ..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 56788999999999999999999 9999999999998874 57788999999999999999999855 7899999
Q ss_pred eeeeecccCC
Q 038933 77 VEVKKAIPKG 86 (347)
Q Consensus 77 i~v~~a~~~~ 86 (347)
|.|.++.++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999997654
No 261
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.7e-16 Score=120.75 Aligned_cols=82 Identities=24% Similarity=0.494 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCcee--------C
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKL--------K 176 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i--------~ 176 (347)
....++|||+|||+++|+++|+++|++||.|..++|+.++ +++++|||||+|.+.++|++|++ +++..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567899999999999999999999999999999999998 89999999999999999999998 488888 5
Q ss_pred CeEEEEEecCCC
Q 038933 177 YKMVEVKRSHPK 188 (347)
Q Consensus 177 g~~i~v~~a~~~ 188 (347)
++.|.|.++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 262
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=119.25 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEe--CeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVIL--GKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~--gr~i~v 79 (347)
....++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.++ ..+. |++|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456799999999999999999999999999999998865 4799999999999999999755 7788 899999
Q ss_pred eecccCC
Q 038933 80 KKAIPKG 86 (347)
Q Consensus 80 ~~a~~~~ 86 (347)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9997653
No 263
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=122.43 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCC---CCcceEEEEEEcchhHHHHHHHhcCceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLT---GHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t---g~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v 79 (347)
....++|||+|||+++|+++|+++|++||+|. +.++.++.+ |+++|||||+|.+.++|++|++.++ .++|+.|.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEe
Confidence 35689999999999999999999999999999 888888766 7999999999999999999999884 688998888
Q ss_pred eeccc
Q 038933 80 KKAIP 84 (347)
Q Consensus 80 ~~a~~ 84 (347)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 76543
No 264
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=4.2e-16 Score=122.25 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=70.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCc-eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFG-TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
....+|||+|||+++|+++|+++|++|| .|..+.+..+ +++|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999 8999988643 4789999999999999999975 99999999999999
Q ss_pred cCCC
Q 038933 185 SHPK 188 (347)
Q Consensus 185 a~~~ 188 (347)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 265
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=3.8e-16 Score=117.71 Aligned_cols=78 Identities=31% Similarity=0.508 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeec
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKA 82 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a 82 (347)
+.+..+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|+++.. ....+.|++|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEc
Confidence 567889999999999999999999999999999999874 67999999999999985432 233456999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 266
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=119.92 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999987655 3378899999999999999999999866 689999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97654
No 267
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=6.9e-16 Score=132.74 Aligned_cols=85 Identities=38% Similarity=0.702 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
..++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.++..+.|+.|.|.++.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 45899999999999999999999999999999999999899999999999999999999999877899999999999987
Q ss_pred CCCcc
Q 038933 85 KGHKL 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
+....
T Consensus 183 k~~~~ 187 (196)
T 1l3k_A 183 KQEMA 187 (196)
T ss_dssp -----
T ss_pred hhHhc
Confidence 76543
No 268
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.7e-16 Score=119.43 Aligned_cols=79 Identities=29% Similarity=0.506 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
..+.++|||+|||+++|+++|+++|++||+|..|++.++ +|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999865 4899999999999999998865 789999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 976543
No 269
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=7.3e-16 Score=120.72 Aligned_cols=75 Identities=17% Similarity=0.427 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 107 INTKKIFVGGLPLD-IKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 107 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
...++|||+|||++ +|+++|+++|++||.|..|.+ ++|||||+|.+.++|++|++ +++..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34679999999999 999999999999999999988 46799999999999999996 599999999999999
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
+.+..
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97543
No 270
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.9e-16 Score=116.22 Aligned_cols=78 Identities=26% Similarity=0.398 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|++|++.++ ..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456789999999999999999999999999999999984 399999999999999998855 78999999999
Q ss_pred ecccCCC
Q 038933 81 KAIPKGH 87 (347)
Q Consensus 81 ~a~~~~~ 87 (347)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9976543
No 271
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-17 Score=131.56 Aligned_cols=85 Identities=21% Similarity=0.390 Sum_probs=78.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEe--------ecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeC
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTD--------APVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLK 176 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~ 176 (347)
..+.++|||+|||+++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++|++ +++..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 9999998899999999999999999999998 4999999
Q ss_pred CeEEEEEecCCCCC
Q 038933 177 YKMVEVKRSHPKDR 190 (347)
Q Consensus 177 g~~i~v~~a~~~~~ 190 (347)
|+.|.|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987654
No 272
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.7e-17 Score=127.26 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 456899999999999999999999999998443333322278899999999999999999999865 7889999999999
Q ss_pred ccCCCc
Q 038933 83 IPKGHK 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 776543
No 273
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=116.03 Aligned_cols=80 Identities=25% Similarity=0.484 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecC
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~ 186 (347)
...++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++|+++++..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 346799999999999999999999999999987 55655555 9999999999999999999999999999999887
Q ss_pred CCCCC
Q 038933 187 PKDRI 191 (347)
Q Consensus 187 ~~~~~ 191 (347)
++...
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 65543
No 274
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.4e-16 Score=115.59 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 2 EPVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
++...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999999999999999999999999999984 399999999999999999755 78999999999
Q ss_pred ecccCC
Q 038933 81 KAIPKG 86 (347)
Q Consensus 81 ~a~~~~ 86 (347)
++.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997654
No 275
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=124.92 Aligned_cols=83 Identities=11% Similarity=0.200 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEe
Q 038933 3 PVSLRKLFVGGVSRETNEETLR----EYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEV 77 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i 77 (347)
..+.++|||+|||+++++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++|++.++ ..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999887753 67899999999999999999999866 68899999
Q ss_pred eeeecccCCCc
Q 038933 78 EVKKAIPKGHK 88 (347)
Q Consensus 78 ~v~~a~~~~~~ 88 (347)
.|.++..+...
T Consensus 103 ~V~~a~~~~~~ 113 (127)
T 2a3j_A 103 VITFSETPQSQ 113 (127)
T ss_dssp EEEECCCCCHH
T ss_pred EEEEccCcchh
Confidence 99999765433
No 276
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=119.96 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999996 666654 577999999999999999998865 788999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97653
No 277
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=7.5e-16 Score=120.39 Aligned_cols=76 Identities=28% Similarity=0.451 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4678999999999999999999999999999999998 4899999999999999999855 789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+..+.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 97654
No 278
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=118.75 Aligned_cols=80 Identities=14% Similarity=0.412 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
....++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999876 67999999999999999974 99999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9887654
No 279
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=115.30 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ +++..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999988766 3468999999999999999999999 488999999999999
Q ss_pred cCCCCC
Q 038933 185 SHPKDR 190 (347)
Q Consensus 185 a~~~~~ 190 (347)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 977543
No 280
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=115.56 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeC--CeEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLK--YKMVEV 182 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~--g~~i~v 182 (347)
..+.++|||+|||+++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++ +++..++ |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345789999999999999999999999999999998754 6799999999999999998 4999999 999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987643
No 281
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.6e-15 Score=116.14 Aligned_cols=75 Identities=24% Similarity=0.453 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 3 PVSLRKLFVGGVSR-ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 3 ~~~~r~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
..+.++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 46789999999998 99999999999999999999883 5899999999999999999765 67889999999
Q ss_pred ecccC
Q 038933 81 KAIPK 85 (347)
Q Consensus 81 ~a~~~ 85 (347)
++..+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98654
No 282
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=116.61 Aligned_cols=80 Identities=30% Similarity=0.489 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
...+.++|||+|||+++|+++|+++|++||.|..|.+.++ +|||||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999998754 67999999999999999975 9999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987654
No 283
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=113.52 Aligned_cols=77 Identities=29% Similarity=0.431 Sum_probs=70.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|..++++++ ||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999844 99999999999999998 499999999999999
Q ss_pred cCCCCC
Q 038933 185 SHPKDR 190 (347)
Q Consensus 185 a~~~~~ 190 (347)
+.++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987644
No 284
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=116.28 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=65.3
Q ss_pred ceEEEcCCCCCC------CHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCe-EEE
Q 038933 110 KKIFVGGLPLDI------KEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYK-MVE 181 (347)
Q Consensus 110 ~~l~V~nLp~~~------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~-~i~ 181 (347)
++|||+|||+.+ |+++|+++|++||.|.++.++ +.+++++|||||+|.+.++|++|++. ++..++|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 779999999999999999988 45789999999999999999999985 99999998 776
Q ss_pred E
Q 038933 182 V 182 (347)
Q Consensus 182 v 182 (347)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 285
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.4e-15 Score=131.40 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
..++|||+|||+++|+++|+++|++||.|.+|+|+++. +++++|||||+|.+.++|++|++.++..+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999987 69999999999999999999999888899999999998765
Q ss_pred C
Q 038933 85 K 85 (347)
Q Consensus 85 ~ 85 (347)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 286
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=9.4e-16 Score=115.52 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=63.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEec
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRS 185 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a 185 (347)
..+..+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|++.++|+++. .....+.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 456789999999999999999999999999999999864 7899999999999998532 2345577999999999
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 287
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.8e-15 Score=132.51 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|||+++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|++. ++..+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999985 89999999999998
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 86544
No 288
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=118.64 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh---CCceeCCeEEE
Q 038933 106 EINTKKIFVGGLPLD-IKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT---RFHKLKYKMVE 181 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~---~~~~i~g~~i~ 181 (347)
..+.++|||+|||++ +|+++|+++|++||.|.+|.|++ ++|||||+|++.++|++|++. ++..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999974 368999999999999999984 45679999999
Q ss_pred EEecCCCCCC
Q 038933 182 VKRSHPKDRI 191 (347)
Q Consensus 182 v~~a~~~~~~ 191 (347)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999776543
No 289
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=7e-16 Score=131.33 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++++++|+++|++||+|..|.|+.++ +++++|||||+|.+.++|++|++.++ ..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999 99999999999999999999999866 6899999999998
Q ss_pred ccC
Q 038933 83 IPK 85 (347)
Q Consensus 83 ~~~ 85 (347)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 290
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=115.58 Aligned_cols=77 Identities=17% Similarity=0.352 Sum_probs=67.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCce-eEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCC-ceeCCeEEEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGT-VTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRF-HKLKYKMVEVK 183 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~-~~i~g~~i~v~ 183 (347)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++ +++ ..++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 5555442 47899999999999999998 588 99999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987654
No 291
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=111.58 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=69.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-h-CCceeCCeEEE
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-T-RFHKLKYKMVE 181 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~-~~~~i~g~~i~ 181 (347)
....+.++|||+|||+++|+++|+++|++||.|.++.++++ +|+|||+|.+.++|++|++ + ++..++|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456789999999999999999999999999999999864 6799999999999999999 4 88999999999
Q ss_pred EEecC
Q 038933 182 VKRSH 186 (347)
Q Consensus 182 v~~a~ 186 (347)
|.++.
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 292
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=122.46 Aligned_cols=82 Identities=12% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFK----SYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMV 180 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i 180 (347)
..+..+|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++|++. ++..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999988764 578999999999999999999975 9999999999
Q ss_pred EEEecCCCCC
Q 038933 181 EVKRSHPKDR 190 (347)
Q Consensus 181 ~v~~a~~~~~ 190 (347)
.|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 293
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=115.73 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=71.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++|+++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999996 66654 46789999999999999999975 9999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987643
No 294
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.8e-16 Score=116.70 Aligned_cols=78 Identities=33% Similarity=0.553 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeecc
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAI 83 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 83 (347)
...++|||+|||+++|+++|+++|++||+|.+|+++.+ ++|||||+|.+.++|++|+.. ...+.+++|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 56799999999999999999999999999999999865 679999999999999876543 346689999999987
Q ss_pred cCCC
Q 038933 84 PKGH 87 (347)
Q Consensus 84 ~~~~ 87 (347)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 295
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=8.8e-16 Score=118.30 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCCC
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHPK 188 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~~ 188 (347)
++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++. ++..++|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999876 688999999999999999984 889999999999999876
Q ss_pred CC
Q 038933 189 DR 190 (347)
Q Consensus 189 ~~ 190 (347)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 296
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=1.2e-15 Score=116.57 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFK----SYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMV 180 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i 180 (347)
..+.++|||+|||+++++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++|++. ++..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3567899999999999999999 9999999999998874 477889999999999999999985 9999999999
Q ss_pred EEEecCCCCC
Q 038933 181 EVKRSHPKDR 190 (347)
Q Consensus 181 ~v~~a~~~~~ 190 (347)
.|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987653
No 297
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.8e-15 Score=111.97 Aligned_cols=78 Identities=26% Similarity=0.405 Sum_probs=70.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcC--ceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESF--GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVE 181 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~ 181 (347)
...+.++|||+|||+++|+++|+++|++| |.|..+.+. +|||||+|.+.++|++|++ +++..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999998775 4699999999999999999 599999999999
Q ss_pred EEecCCCCC
Q 038933 182 VKRSHPKDR 190 (347)
Q Consensus 182 v~~a~~~~~ 190 (347)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 298
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=114.17 Aligned_cols=75 Identities=31% Similarity=0.455 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC--CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY--GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
...++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|++|++.++ ..+.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 899988765 3699999999999999999755 78999999999
Q ss_pred ecccCC
Q 038933 81 KAIPKG 86 (347)
Q Consensus 81 ~a~~~~ 86 (347)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 997654
No 299
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1e-15 Score=116.96 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeee
Q 038933 3 PVSLRKLFVGGVSR-ETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVK 80 (347)
Q Consensus 3 ~~~~r~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~ 80 (347)
..+.++|||+|||+ ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.++ ..+.|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45789999999999 99999999999999999999984 4799999999999999999855 78899999999
Q ss_pred ecccCCC
Q 038933 81 KAIPKGH 87 (347)
Q Consensus 81 ~a~~~~~ 87 (347)
++..+..
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976543
No 300
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=2.2e-15 Score=118.04 Aligned_cols=74 Identities=20% Similarity=0.444 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 5 SLRKLFVGGVSRE-TNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 5 ~~r~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
..++|||+|||++ +|+++|+++|++||.|..|++ ++|||||+|.+.++|++|++.++ ..+.|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999988 45899999999999999998755 7899999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 301
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.6e-15 Score=124.46 Aligned_cols=81 Identities=27% Similarity=0.462 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999999755 789999999999
Q ss_pred cc
Q 038933 82 AI 83 (347)
Q Consensus 82 a~ 83 (347)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 84
No 302
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.4e-15 Score=117.15 Aligned_cols=76 Identities=16% Similarity=0.329 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a 185 (347)
...++|||+|||+++|+++|+++|++||.|.++++. +++|||||+|.+.++|++|+.. ++..++|+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 446899999999999999999999999999999987 3578999999999999999975 999999999999998
Q ss_pred CCC
Q 038933 186 HPK 188 (347)
Q Consensus 186 ~~~ 188 (347)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 303
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=1.9e-15 Score=113.53 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 567999999999999999999765 7899999999998
Q ss_pred ccC
Q 038933 83 IPK 85 (347)
Q Consensus 83 ~~~ 85 (347)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 304
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=115.80 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCC-eEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC--ceEeCeEeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGT-VEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH--HVILGKEVEV 79 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~--~~~~gr~i~v 79 (347)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.++ ..+.|++|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 567899999999999999999999999999 6656553 35899999999999999999755 6899999999
Q ss_pred eecccCCC
Q 038933 80 KKAIPKGH 87 (347)
Q Consensus 80 ~~a~~~~~ 87 (347)
.++.++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99976543
No 305
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=114.32 Aligned_cols=77 Identities=26% Similarity=0.461 Sum_probs=67.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~ 187 (347)
..++|||+|||+++|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|++|+.. ...+.++.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999864 689999999999999876443 4667999999999987
Q ss_pred CCC
Q 038933 188 KDR 190 (347)
Q Consensus 188 ~~~ 190 (347)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.9e-16 Score=120.30 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
.+.++|||+|||+++|+++|+++|++||.|..|.|++ ++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999998875 44799999999999999999866 6899999999998
Q ss_pred ccC
Q 038933 83 IPK 85 (347)
Q Consensus 83 ~~~ 85 (347)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 654
No 307
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=3.6e-15 Score=125.50 Aligned_cols=80 Identities=21% Similarity=0.494 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.++ ..+.|++|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 346899999999999999999999999999999999998899999999999999999999999855 7899999999987
Q ss_pred c
Q 038933 83 I 83 (347)
Q Consensus 83 ~ 83 (347)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 308
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.9e-15 Score=119.47 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=68.2
Q ss_pred CeEEEcCC----CCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcc----hhH----HHHHHH--h-cCce
Q 038933 7 RKLFVGGV----SRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTK----ISM----AEDALQ--H-KHHV 71 (347)
Q Consensus 7 r~l~V~nL----p~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~----~~~----a~~Al~--~-~~~~ 71 (347)
.+|||+|| |+++++++|+++|++||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. . .+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788877 4 4478
Q ss_pred EeCeEeeeeecc
Q 038933 72 ILGKEVEVKKAI 83 (347)
Q Consensus 72 ~~gr~i~v~~a~ 83 (347)
|.|++|.|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998753
No 309
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=113.95 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEee-cccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDA-PVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVK 183 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~ 183 (347)
....++|||+|||+++|+++|+++|++||.|..+ .++.++.++ .|||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 488776543 39999999999999998 59999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.+++.
T Consensus 88 ~a~~~~~ 94 (96)
T 2e44_A 88 YIPDEMA 94 (96)
T ss_dssp ECCCCCS
T ss_pred EcCcccc
Confidence 9988743
No 310
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=6.4e-15 Score=112.75 Aligned_cols=76 Identities=21% Similarity=0.453 Sum_probs=69.1
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 105 TEINTKKIFVGGLPL-DIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
...+.++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++ .++..++|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999883 6799999999999999999 5999999999999
Q ss_pred EecCCC
Q 038933 183 KRSHPK 188 (347)
Q Consensus 183 ~~a~~~ 188 (347)
.++.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998764
No 311
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=2.9e-15 Score=116.99 Aligned_cols=78 Identities=24% Similarity=0.562 Sum_probs=70.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|++|++. ++..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999887 57999999999999999985 9999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9987654
No 312
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=2.2e-15 Score=118.92 Aligned_cols=80 Identities=16% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
.+.++|||+|||+++|+++|+++|++||.|..|.++.+ +.++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999876 4568999999999999999999 5999999999999999
Q ss_pred CCCC
Q 038933 186 HPKD 189 (347)
Q Consensus 186 ~~~~ 189 (347)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8644
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.1e-15 Score=116.71 Aligned_cols=77 Identities=22% Similarity=0.461 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 106 EINTKKIFVGGLPL-DIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 106 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
..+.++|||+|||+ ++|+++|+++|++||.|..+.+. +|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35688999999999 99999999999999999999884 67999999999999999995 9999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.++..
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9977544
No 314
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.8e-15 Score=118.44 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=69.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcC----h-HH---HHHHHH--h-CCce
Q 038933 110 KKIFVGGL----PLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDS----E-DA---ANNVLQ--T-RFHK 174 (347)
Q Consensus 110 ~~l~V~nL----p~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~----~-e~---a~~Al~--~-~~~~ 174 (347)
..|||+|| |+.+++++|+++|++||+|.++.++.|+.|++++|||||+|.+ + ++ |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 3 32 788877 4 8999
Q ss_pred eCCeEEEEEecCC
Q 038933 175 LKYKMVEVKRSHP 187 (347)
Q Consensus 175 i~g~~i~v~~a~~ 187 (347)
|+|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997654
No 315
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=5.9e-15 Score=127.07 Aligned_cols=83 Identities=22% Similarity=0.470 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 567999999999999999999999999999999999998899999999999999999999999855 7899999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=115.45 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEE-EEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
...++|||+|||+++|+++|+++|++||.|.+| .++.++.++ .|||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 488876554 39999999999999999755 789999999999
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 317
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=8.8e-16 Score=128.63 Aligned_cols=81 Identities=31% Similarity=0.640 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEeeeeeccc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVEVKKAIP 84 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 84 (347)
..++|||+|||+++|+++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++..+..+.|++|.|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35789999999999999999999999999999999998899999999999999999999999544788999999999976
Q ss_pred C
Q 038933 85 K 85 (347)
Q Consensus 85 ~ 85 (347)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 318
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=6.2e-15 Score=123.46 Aligned_cols=82 Identities=22% Similarity=0.452 Sum_probs=77.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~ 186 (347)
+.++|||+|||+++|+++|+++|++||.|.++.+++++.+++++|+|||+|.+.++|++|++ .++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999999899999999999999999999998 59999999999999987
Q ss_pred CCC
Q 038933 187 PKD 189 (347)
Q Consensus 187 ~~~ 189 (347)
++.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 319
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=8.1e-15 Score=122.39 Aligned_cols=81 Identities=27% Similarity=0.540 Sum_probs=76.5
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecCC
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~~ 187 (347)
.++|||+|||+++|+++|+++|++||.|.++.+++++.+++++|+|||+|.+.++|++|++ .++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999999899999999999999999999998 599999999999999876
Q ss_pred CC
Q 038933 188 KD 189 (347)
Q Consensus 188 ~~ 189 (347)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 320
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=116.89 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=67.1
Q ss_pred CCCCCeEEE--cCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE-----eC
Q 038933 3 PVSLRKLFV--GGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI-----LG 74 (347)
Q Consensus 3 ~~~~r~l~V--~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~-----~g 74 (347)
..+.++||| +|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.++ ..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456789999 779999999999999999999999988643 5899999999999999999877 566 58
Q ss_pred eEeeeeecccC
Q 038933 75 KEVEVKKAIPK 85 (347)
Q Consensus 75 r~i~v~~a~~~ 85 (347)
++|.|.++...
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 99999988543
No 321
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=1.8e-15 Score=125.26 Aligned_cols=78 Identities=26% Similarity=0.384 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
....++|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999886 46899999999999999999755 788999999999
Q ss_pred cccC
Q 038933 82 AIPK 85 (347)
Q Consensus 82 a~~~ 85 (347)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 322
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=5.5e-15 Score=129.02 Aligned_cols=83 Identities=20% Similarity=0.512 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 356899999999999999999999999999999999998899999999999999999999999855 7899999999999
Q ss_pred ccCC
Q 038933 83 IPKG 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7654
No 323
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2.8e-15 Score=118.48 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=64.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeE-----E
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKM-----V 180 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~-----i 180 (347)
....+|||+|||+++|+++|+++|++||.|.+|.|+.+ |||||+|++.++|++||+ +++..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999866 799999999999999999 5999999988 7
Q ss_pred EEEecCCC
Q 038933 181 EVKRSHPK 188 (347)
Q Consensus 181 ~v~~a~~~ 188 (347)
+|..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776653
No 324
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=4.8e-15 Score=143.35 Aligned_cols=84 Identities=26% Similarity=0.447 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++ ..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999998899999999999999999999998866 7899999999999
Q ss_pred ccCCC
Q 038933 83 IPKGH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
..+..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 76554
No 325
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=116.68 Aligned_cols=79 Identities=28% Similarity=0.504 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCC---CCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKET---GRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVK 183 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~---~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~ 183 (347)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ ++++|||||+|.+.++|++|++.. ..++|+.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 4578999999999999999999999999999 888888777 799999999999999999999864 46889888887
Q ss_pred ecCC
Q 038933 184 RSHP 187 (347)
Q Consensus 184 ~a~~ 187 (347)
.+.+
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6543
No 326
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=3.4e-15 Score=127.05 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVK 183 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~ 183 (347)
.....++|||+|||+++++++|+++|++||.|+.|.|+.++ +++++|||||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999994 8999999999999
Q ss_pred ecCCCCC
Q 038933 184 RSHPKDR 190 (347)
Q Consensus 184 ~a~~~~~ 190 (347)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9976543
No 327
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=109.76 Aligned_cols=78 Identities=17% Similarity=0.363 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|| ++|+++|+++|++||.|.+|.|. +++|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999884 4678999999999999999975 99999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9876553
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=123.53 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=73.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEee--ccccc---CCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEE
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDA--PVICD---KETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMV 180 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v--~i~~~---~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i 180 (347)
.+.++|||+|||+++|+++|+++|++||.|..+ .++.+ ..+++++|||||+|.+.++|.+|+. +++..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 457899999999999999999999999999876 22222 3468999999999999999999999 59999999999
Q ss_pred EEEecCCCCCC
Q 038933 181 EVKRSHPKDRI 191 (347)
Q Consensus 181 ~v~~a~~~~~~ 191 (347)
.|.++.+....
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999775543
No 329
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=8.9e-16 Score=126.04 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEE--------EEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeC
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEET--------LIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILG 74 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v--------~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~g 74 (347)
...++|||+|||+++|+++|+++|++||.|..+ ++. .+++++|||||+|.+.++|++|++.++ ..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 467899999999999999999999999998764 333 278899999999999999999999765 78999
Q ss_pred eEeeeeecccCCC
Q 038933 75 KEVEVKKAIPKGH 87 (347)
Q Consensus 75 r~i~v~~a~~~~~ 87 (347)
+.|.|.++.....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999966543
No 330
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=2.2e-14 Score=123.81 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=73.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~ 187 (347)
..++|||+|||+++|+++|+++|++||.|..|+|+++.. ++++|+|||+|++.++|++|++..+..++|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 468999999999999999999999999999999999864 8999999999999999999999867799999999998765
Q ss_pred C
Q 038933 188 K 188 (347)
Q Consensus 188 ~ 188 (347)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 331
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=5.6e-15 Score=110.34 Aligned_cols=73 Identities=22% Similarity=0.476 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccC----C-------CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCce
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQY----G-------TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHV 71 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~ 71 (347)
..+.++|||+|||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+..++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 3567999999999999999999999999 8 8999998865 489999999999999999334578
Q ss_pred EeCeEeeeee
Q 038933 72 ILGKEVEVKK 81 (347)
Q Consensus 72 ~~gr~i~v~~ 81 (347)
+.|+.|.|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 332
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.6e-15 Score=115.58 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
...++|||+|||+++|+++|+++|++||.|..|.|+. ++|+|||+|.+.++|++|++ +++..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999999874 46799999999999999998 4999999999999999
Q ss_pred CCCCC
Q 038933 186 HPKDR 190 (347)
Q Consensus 186 ~~~~~ 190 (347)
.....
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 76543
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-14 Score=109.12 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|| ++|+++|+++|++||+|.+|+|. +++|||||+|.+.++|++|++.++ ..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999996 89999999999999999999985 456899999999999999998866 789999999999
Q ss_pred cccCCC
Q 038933 82 AIPKGH 87 (347)
Q Consensus 82 a~~~~~ 87 (347)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 976543
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=113.79 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCcceEEE--cCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCcee-----CCe
Q 038933 107 INTKKIFV--GGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKL-----KYK 178 (347)
Q Consensus 107 ~~~~~l~V--~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i-----~g~ 178 (347)
.++++||| +||++++|+++|+++|++||.|.+|.++.+ +|||||+|++.++|++|++. ++..+ .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 779999999999999999999999988643 68999999999999999984 99888 799
Q ss_pred EEEEEecCCCCCC
Q 038933 179 MVEVKRSHPKDRI 191 (347)
Q Consensus 179 ~i~v~~a~~~~~~ 191 (347)
.|.|.++......
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 9999998765543
No 335
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=9.4e-15 Score=109.65 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=68.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecC
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~ 186 (347)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99998884 678999999999999999999 59999999999999987
Q ss_pred CCC
Q 038933 187 PKD 189 (347)
Q Consensus 187 ~~~ 189 (347)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=2.1e-14 Score=119.42 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCC--eEEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKY--KMVEV 182 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g--~~i~v 182 (347)
+....+|||+||++.+|+++|+++|++||.|++|+|+.+ +++|||||+|.+.++|++|++. ++..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 345678999999999999999999999999999998643 3578999999999999999985 9999965 99999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++.++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99988753
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=5.8e-15 Score=116.63 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeE-----e
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKE-----V 77 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~-----i 77 (347)
...++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.++ ..|.|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999876 799999999999999999865 7889988 5
Q ss_pred eeeeccc
Q 038933 78 EVKKAIP 84 (347)
Q Consensus 78 ~v~~a~~ 84 (347)
.|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6665544
No 338
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.8e-14 Score=119.84 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeC--eEeeeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILG--KEVEVKK 81 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~g--r~i~v~~ 81 (347)
...+|||+|||+.+|+++|+++|++||+|.+|+|..++ ++|||||+|.+.++|++|++.++ ..|.| ++|.|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34568999999999999999999999999999987543 56899999999999999999977 56755 9999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98764
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.6e-14 Score=107.83 Aligned_cols=72 Identities=22% Similarity=0.488 Sum_probs=65.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcC----c-------eeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCcee
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESF----G-------TVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKL 175 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i 175 (347)
.+.++|||+|||+++|+++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+.+++..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 457899999999999999999999999 8 8999988754 6899999999999999996699999
Q ss_pred CCeEEEEEe
Q 038933 176 KYKMVEVKR 184 (347)
Q Consensus 176 ~g~~i~v~~ 184 (347)
+|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 340
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=3.4e-14 Score=113.90 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeE-EEEEEcChHHHHHHHHh-CCceeCC--eEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGF-GFITFDSEDAANNVLQT-RFHKLKY--KMVE 181 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~F~~~e~a~~Al~~-~~~~i~g--~~i~ 181 (347)
+....+|||+||++.+|+++|+++|++||.|.+|+++.+ ++|+ |||+|.+.++|++|++. ++..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 355678899999999999999999999999999988753 3577 99999999999999985 9999988 9999
Q ss_pred EEecCCCCC
Q 038933 182 VKRSHPKDR 190 (347)
Q Consensus 182 v~~a~~~~~ 190 (347)
|.++.++..
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999988754
No 341
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=4.9e-14 Score=109.38 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCC-----CCcHHHHHHHhccCCCeEEEEEEecCCC-CCcceEEEEEEcchhHHHHHHHhcC-ceEeCe
Q 038933 3 PVSLRKLFVGGVSR-----ETNEETLREYFSQYGTVEETLIIRSRLT-GHGRGFGFVIFTKISMAEDALQHKH-HVILGK 75 (347)
Q Consensus 3 ~~~~r~l~V~nLp~-----~~te~~L~~~F~~~G~v~~v~i~~~~~t-g~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr 75 (347)
+..+++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|+|||+|.+.++|++|++.++ ..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 56789999999963 2378999999999999999999998754 6899999999999999999999866 789999
Q ss_pred Eeeeeeccc
Q 038933 76 EVEVKKAIP 84 (347)
Q Consensus 76 ~i~v~~a~~ 84 (347)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=7.2e-14 Score=112.00 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=67.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceE-EEEEEcchhHHHHHHHhcC-ceEeC--eEeeeee
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGF-GFVIFTKISMAEDALQHKH-HVILG--KEVEVKK 81 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~-aFVeF~~~~~a~~Al~~~~-~~~~g--r~i~v~~ 81 (347)
--.|||+||++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|++|++.++ ..|.| +.|.|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3467899999999999999999999999999888642 477 9999999999999999977 68888 9999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 97764
No 343
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=2.4e-14 Score=120.51 Aligned_cols=78 Identities=38% Similarity=0.607 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEe---CeEeee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVIL---GKEVEV 79 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~---gr~i~v 79 (347)
...++|||+|||+++|+++|+++|++||.|.++++++++ +++++|||||+|.+.++|++|++.++ ..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 367899999999999999999999999999999999997 79999999999999999999999876 4555 499999
Q ss_pred eec
Q 038933 80 KKA 82 (347)
Q Consensus 80 ~~a 82 (347)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=106.33 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCCe-EEEcCCCCCCcHHH----HHHHhccC-CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEe
Q 038933 5 SLRK-LFVGGVSRETNEET----LREYFSQY-GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEV 77 (347)
Q Consensus 5 ~~r~-l~V~nLp~~~te~~----L~~~F~~~-G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i 77 (347)
+..| |||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.++ ..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999998 55899999 599888 33 899999999999999999866 78999999
Q ss_pred eeeecccCCCc
Q 038933 78 EVKKAIPKGHK 88 (347)
Q Consensus 78 ~v~~a~~~~~~ 88 (347)
.|.++..+...
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999766544
No 345
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=1.3e-13 Score=109.99 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeE-EEEEEcChHHHHHHHHh-CCceeCC--eEEE
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGF-GFITFDSEDAANNVLQT-RFHKLKY--KMVE 181 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~F~~~e~a~~Al~~-~~~~i~g--~~i~ 181 (347)
+.....|||+||++.+|+++|+++|++||.|.+|+|+.. .|+ |||+|.+.++|++|++. ++..|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 344566889999999999999999999999999998642 276 99999999999999985 9999987 6999
Q ss_pred EEecCCCCC
Q 038933 182 VKRSHPKDR 190 (347)
Q Consensus 182 v~~a~~~~~ 190 (347)
|.++.++..
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999987753
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=9.7e-14 Score=107.67 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=72.1
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHhhhcCceeEeecccccCCC-CCceeEEEEEEcChHHHHHHHH-hCCceeCCeE
Q 038933 107 INTKKIFVGGLPL-----DIKEEEFKSYFESFGTVTDAPVICDKET-GRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKM 179 (347)
Q Consensus 107 ~~~~~l~V~nLp~-----~~t~e~L~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~ 179 (347)
.++++|+|.||.. +-++++|+++|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|++ +++..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2478999999999999999999998754 6899999999999999999998 4999999999
Q ss_pred EEEEecCCC
Q 038933 180 VEVKRSHPK 188 (347)
Q Consensus 180 i~v~~a~~~ 188 (347)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998653
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=9e-14 Score=110.84 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceE-EEEEEcchhHHHHHHHhcC-ceEeC--eEeeeeecc
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGF-GFVIFTKISMAEDALQHKH-HVILG--KEVEVKKAI 83 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~-aFVeF~~~~~a~~Al~~~~-~~~~g--r~i~v~~a~ 83 (347)
.|||+|||+.+|+++|+++|++||.|.+|+|+.. .|+ |||+|.+.++|++|++.++ ..|.| +.|.|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999752 175 9999999999999999876 67877 699999997
Q ss_pred cCC
Q 038933 84 PKG 86 (347)
Q Consensus 84 ~~~ 86 (347)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 348
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.3e-14 Score=104.13 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=64.5
Q ss_pred Ccce-EEEcCCCCCCCHHH----HHHhhhcC-ceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEE
Q 038933 108 NTKK-IFVGGLPLDIKEEE----FKSYFESF-GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMV 180 (347)
Q Consensus 108 ~~~~-l~V~nLp~~~t~e~----L~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i 180 (347)
++.+ |||+|||+.+++++ |+++|++| |.|.+| ++ |+|||+|.+.++|++|++ +++..+.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599998 23 899999999999999998 59999999999
Q ss_pred EEEecCCCCCC
Q 038933 181 EVKRSHPKDRI 191 (347)
Q Consensus 181 ~v~~a~~~~~~ 191 (347)
+|.+|..+...
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999876543
No 349
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=1.5e-12 Score=118.57 Aligned_cols=82 Identities=23% Similarity=0.375 Sum_probs=74.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeE
Q 038933 105 TEINTKKIFVGGLPLDIKEEEFK----SYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKM 179 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~ 179 (347)
+..+.++|||+|||+++|+++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++|++ +++..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568899999999999999977 8999999999999886 58899999999999999999996 5999999999
Q ss_pred EEEEecCCCC
Q 038933 180 VEVKRSHPKD 189 (347)
Q Consensus 180 i~v~~a~~~~ 189 (347)
|.|.++..+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 350
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=7.4e-14 Score=117.89 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a 82 (347)
...++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.++ ..+.|+.|.|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456899999999999999999999999987655 4488999999999999999999999866 7899999999999
Q ss_pred ccC
Q 038933 83 IPK 85 (347)
Q Consensus 83 ~~~ 85 (347)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=4.9e-14 Score=112.29 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeee
Q 038933 3 PVSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKK 81 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~ 81 (347)
+...++|||+|| ++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|++|++.++ ..+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999996 79999999999999999999986 356899999999999999998855 789999999999
Q ss_pred cccCC
Q 038933 82 AIPKG 86 (347)
Q Consensus 82 a~~~~ 86 (347)
+.++.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 97654
No 352
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.8e-13 Score=119.16 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=70.4
Q ss_pred CcceEEEcCCC-CCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEec
Q 038933 108 NTKKIFVGGLP-LDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRS 185 (347)
Q Consensus 108 ~~~~l~V~nLp-~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a 185 (347)
+..+|||+||| +.+|+++|+++|++||.|.+|+++++ ++|+|||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999865 36899999999999999998 5999999999999998
Q ss_pred CCCC
Q 038933 186 HPKD 189 (347)
Q Consensus 186 ~~~~ 189 (347)
..+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7544
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=1.2e-13 Score=109.95 Aligned_cols=78 Identities=17% Similarity=0.363 Sum_probs=68.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~ 184 (347)
..+.++|||+|| ++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 79999999999999999999885 4678999999999999999975 99999999999999
Q ss_pred cCCCCCC
Q 038933 185 SHPKDRI 191 (347)
Q Consensus 185 a~~~~~~ 191 (347)
+.++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9876543
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=1.5e-13 Score=121.62 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCC---------cHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceE-
Q 038933 4 VSLRKLFVGGVSRET---------NEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVI- 72 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~---------te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~- 72 (347)
...++|||+|||.++ ++++|+++|++||+|.+|+|+.+ +|||||+|.+.++|++|++.++ ..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467999999999998 89999999999999999999964 5899999999999999999866 567
Q ss_pred -----------eCeEeeeeecccCC
Q 038933 73 -----------LGKEVEVKKAIPKG 86 (347)
Q Consensus 73 -----------~gr~i~v~~a~~~~ 86 (347)
.|+.|.|.|+....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 79999999997654
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.9e-13 Score=103.75 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCc-----------HHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-
Q 038933 2 EPVSLRKLFVGGVSRETN-----------EETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH- 69 (347)
Q Consensus 2 e~~~~r~l~V~nLp~~~t-----------e~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~- 69 (347)
.+..+++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 467789999999954432 6899999999999999966 544 378999999999999999999876
Q ss_pred ceEeCeEeeeeecccCCC
Q 038933 70 HVILGKEVEVKKAIPKGH 87 (347)
Q Consensus 70 ~~~~gr~i~v~~a~~~~~ 87 (347)
..+.|++|.|.++.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 789999999999876543
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.6e-12 Score=102.02 Aligned_cols=82 Identities=12% Similarity=0.244 Sum_probs=69.4
Q ss_pred CCCCcceEEEcCCCCCCC-----------HHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CC
Q 038933 105 TEINTKKIFVGGLPLDIK-----------EEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RF 172 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~~t-----------~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~ 172 (347)
.+.++++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++. ++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345688999999954432 5899999999999999966 443 3799999999999999999975 99
Q ss_pred ceeCCeEEEEEecCCCCC
Q 038933 173 HKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 173 ~~i~g~~i~v~~a~~~~~ 190 (347)
..|+|+.|.|.++.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999987654
No 357
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=6.8e-13 Score=119.76 Aligned_cols=81 Identities=28% Similarity=0.358 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc-CceEe----CeEeee
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK-HHVIL----GKEVEV 79 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~-~~~~~----gr~i~v 79 (347)
+.++|||+|||+++|+++|+++|++||.|..|+++.++ +++++|||||+|.+.++|.+|+..+ +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46799999999999999999999999999999999995 9999999999999999999999997 34444 899999
Q ss_pred eecccCC
Q 038933 80 KKAIPKG 86 (347)
Q Consensus 80 ~~a~~~~ 86 (347)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9986543
No 358
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.39 E-value=5.1e-13 Score=118.19 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=73.4
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEE
Q 038933 105 TEINTKKIFVGGLPL-DIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEV 182 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v 182 (347)
...+.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++ .++..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999999774 7899999999999999998 5999999999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
.++.++..
T Consensus 105 ~~a~~~~~ 112 (229)
T 2adc_A 105 TLSKHQNV 112 (229)
T ss_dssp ECCSCCCC
T ss_pred EEecCccc
Confidence 99976543
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=1.6e-12 Score=100.82 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred CCcceEEEcCC--CCCCC--------HHHHHHhhhcCceeEeecccccCCC--CCceeEEEEEEcChHHHHHHHHh-CCc
Q 038933 107 INTKKIFVGGL--PLDIK--------EEEFKSYFESFGTVTDAPVICDKET--GRPRGFGFITFDSEDAANNVLQT-RFH 173 (347)
Q Consensus 107 ~~~~~l~V~nL--p~~~t--------~e~L~~~F~~~G~v~~v~i~~~~~~--~~~~G~afV~F~~~e~a~~Al~~-~~~ 173 (347)
.+++.|.|.|+ |..+. +++|++.|++||.|.+|.|++++.+ ++++|+|||+|++.++|++|++. |+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33333 3799999999999999999998765 36899999999999999999974 999
Q ss_pred eeCCeEEEEEecCCC
Q 038933 174 KLKYKMVEVKRSHPK 188 (347)
Q Consensus 174 ~i~g~~i~v~~a~~~ 188 (347)
.++||.|.|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987653
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.5e-13 Score=105.23 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=61.5
Q ss_pred EcCCCCCCcHHHHHHHh------------ccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEe
Q 038933 11 VGGVSRETNEETLREYF------------SQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEV 77 (347)
Q Consensus 11 V~nLp~~~te~~L~~~F------------~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i 77 (347)
+.+||+++++++|+++| ++||+|.+|+|++++ +++++|||||+|.+.++|++|++.++ ..+.||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666777887777666 999999999999987 58999999999999999999999866 78999999
Q ss_pred eeeec
Q 038933 78 EVKKA 82 (347)
Q Consensus 78 ~v~~a 82 (347)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=1.5e-12 Score=100.98 Aligned_cols=81 Identities=26% Similarity=0.214 Sum_probs=70.1
Q ss_pred CCCCeEEEcCC--CCCC--------cHHHHHHHhccCCCeEEEEEEecCCC--CCcceEEEEEEcchhHHHHHHHhcC-c
Q 038933 4 VSLRKLFVGGV--SRET--------NEETLREYFSQYGTVEETLIIRSRLT--GHGRGFGFVIFTKISMAEDALQHKH-H 70 (347)
Q Consensus 4 ~~~r~l~V~nL--p~~~--------te~~L~~~F~~~G~v~~v~i~~~~~t--g~~kG~aFVeF~~~~~a~~Al~~~~-~ 70 (347)
.+++.|.|+|+ |.++ .++||++.|++||+|.+|+|++++.+ ++++|+|||+|.+.++|++|++.++ .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999998 5444 34799999999999999999998754 4689999999999999999999976 7
Q ss_pred eEeCeEeeeeeccc
Q 038933 71 VILGKEVEVKKAIP 84 (347)
Q Consensus 71 ~~~gr~i~v~~a~~ 84 (347)
.+.||.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 88999999998754
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.35 E-value=1e-12 Score=116.39 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCC---------CHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCcee
Q 038933 106 EINTKKIFVGGLPLDI---------KEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKL 175 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~---------t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i 175 (347)
....++|||+||+..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++ +++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 36899999999999999998 488888
Q ss_pred ------------CCeEEEEEecCCCCC
Q 038933 176 ------------KYKMVEVKRSHPKDR 190 (347)
Q Consensus 176 ------------~g~~i~v~~a~~~~~ 190 (347)
.|+.|.|.+|.....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987543
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5e-12 Score=96.94 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCeEEEcCCC-------CCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEee
Q 038933 6 LRKLFVGGVS-------RETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVE 78 (347)
Q Consensus 6 ~r~l~V~nLp-------~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~ 78 (347)
.++|.|.-.+ .++|+++|+++|++||+|.+|+|+ ++++|||||+|.+.++|++|++.++ .+.+++|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEE
Confidence 5567776554 458999999999999999999998 3678999999999999999999854 46799999
Q ss_pred eeecccCC
Q 038933 79 VKKAIPKG 86 (347)
Q Consensus 79 v~~a~~~~ 86 (347)
|.++..+.
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99986654
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=6.6e-13 Score=102.80 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHhh------------hcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEE
Q 038933 114 VGGLPLDIKEEEFKSYF------------ESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMV 180 (347)
Q Consensus 114 V~nLp~~~t~e~L~~~F------------~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i 180 (347)
+.||++.+++++|++.| ++||.|.+|.|++++. ++++|+|||+|.+.++|++|++ +++..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 9999999999998865 7899999999999999999998 49999999999
Q ss_pred EEEec
Q 038933 181 EVKRS 185 (347)
Q Consensus 181 ~v~~a 185 (347)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=3.4e-12 Score=100.97 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=69.6
Q ss_pred CcceEEEcCCCCC-----CCHHHHHHhhhcCceeEeecccccCC----CCCceeEEEEEEcChHHHHHHHHh-CCceeCC
Q 038933 108 NTKKIFVGGLPLD-----IKEEEFKSYFESFGTVTDAPVICDKE----TGRPRGFGFITFDSEDAANNVLQT-RFHKLKY 177 (347)
Q Consensus 108 ~~~~l~V~nLp~~-----~t~e~L~~~F~~~G~v~~v~i~~~~~----~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g 177 (347)
++++|+|.|+-.. -.++||++.|++||.|.+|.|++++. +++++|++||+|.+.++|.+|++. ++..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999998422 23689999999999999999998865 467899999999999999999985 9999999
Q ss_pred eEEEEEecCC
Q 038933 178 KMVEVKRSHP 187 (347)
Q Consensus 178 ~~i~v~~a~~ 187 (347)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 366
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=1.2e-12 Score=112.73 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=70.6
Q ss_pred cceEEEcCCCC-CCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEEEEecC
Q 038933 109 TKKIFVGGLPL-DIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVEVKRSH 186 (347)
Q Consensus 109 ~~~l~V~nLp~-~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~v~~a~ 186 (347)
.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++ .++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998774 6799999999999999998 59999999999999998
Q ss_pred CCC
Q 038933 187 PKD 189 (347)
Q Consensus 187 ~~~ 189 (347)
.+.
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 664
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=5e-12 Score=99.99 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCC--CC---CcHHHHHHHhccCCCeEEEEEEecCC----CCCcceEEEEEEcchhHHHHHHHhcC-ceEe
Q 038933 4 VSLRKLFVGGVS--RE---TNEETLREYFSQYGTVEETLIIRSRL----TGHGRGFGFVIFTKISMAEDALQHKH-HVIL 73 (347)
Q Consensus 4 ~~~r~l~V~nLp--~~---~te~~L~~~F~~~G~v~~v~i~~~~~----tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~ 73 (347)
.++++|+|+|+- .+ -.++||++.|++||+|.+|+|++++. +++++|++||+|.+.++|++|++.++ ..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 468999999993 22 24789999999999999999999864 45788999999999999999999976 7899
Q ss_pred CeEeeeeeccc
Q 038933 74 GKEVEVKKAIP 84 (347)
Q Consensus 74 gr~i~v~~a~~ 84 (347)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998754
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=94.76 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=58.7
Q ss_pred CCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEEEecCCCCC
Q 038933 119 LDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEVKRSHPKDR 190 (347)
Q Consensus 119 ~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v~~a~~~~~ 190 (347)
..+|+++|+++|++||.|.+|.|+ ++++|||||+|++.++|++|++. ...+.++.|.|.++.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCCC
Confidence 568999999999999999999987 47899999999999999999987 4557899999999887654
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=8e-11 Score=109.61 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCCCcceEEEcC--CCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCcee---CCe
Q 038933 105 TEINTKKIFVGG--LPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKL---KYK 178 (347)
Q Consensus 105 ~~~~~~~l~V~n--Lp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i---~g~ 178 (347)
...++.+|||+| |++.+|+++|+++|++||.|++|.+.. +||||||+|++.++|++|++. |+..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 578999999999999999999988864 468999999999999999995 88776 345
Q ss_pred --EEEEEecC
Q 038933 179 --MVEVKRSH 186 (347)
Q Consensus 179 --~i~v~~a~ 186 (347)
.+.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56777764
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=4.8e-11 Score=111.07 Aligned_cols=74 Identities=12% Similarity=0.252 Sum_probs=62.2
Q ss_pred CCCCCeEEEcC--CCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEe---Ce-
Q 038933 3 PVSLRKLFVGG--VSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVIL---GK- 75 (347)
Q Consensus 3 ~~~~r~l~V~n--Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~---gr- 75 (347)
..++++|||+| |++++||++|+++|++||+|.+|.+.+ .||||||+|.+.++|++|++.++ ..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 46789999999 589999999999999999999887754 35899999999999999999977 4453 45
Q ss_pred -Eeeeeec
Q 038933 76 -EVEVKKA 82 (347)
Q Consensus 76 -~i~v~~a 82 (347)
.|.|.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 5666665
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.14 E-value=1.3e-10 Score=91.13 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=66.2
Q ss_pred CCcceEEEcCCCCCCC----------HHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCcee
Q 038933 107 INTKKIFVGGLPLDIK----------EEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKL 175 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t----------~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i 175 (347)
.+++.|.|.|+-..-. ++||++.|++||.|.+|.|.++. ++|++||+|.+.++|++|++ +++..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4577889988843322 36899999999999999987653 58999999999999999998 599999
Q ss_pred CCeEEEEEecCCCC
Q 038933 176 KYKMVEVKRSHPKD 189 (347)
Q Consensus 176 ~g~~i~v~~a~~~~ 189 (347)
+||.|.|.++....
T Consensus 81 ~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 81 AGKMITAAYVPLPT 94 (114)
T ss_dssp TTEECEEEEECHHH
T ss_pred CCEEEEEEEEcHHH
Confidence 99999999986543
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.11 E-value=2.1e-10 Score=90.02 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCCCCeEEEcCCC--CC--------CcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-c
Q 038933 2 EPVSLRKLFVGGVS--RE--------TNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-H 70 (347)
Q Consensus 2 e~~~~r~l~V~nLp--~~--------~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~ 70 (347)
.+.+++.|.|+|+= .+ -.++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|++|++.++ .
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46778999999983 22 1356889999999999999886653 48999999999999999999876 7
Q ss_pred eEeCeEeeeeeccc
Q 038933 71 VILGKEVEVKKAIP 84 (347)
Q Consensus 71 ~~~gr~i~v~~a~~ 84 (347)
.+.||.|.|.++..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 89999999999854
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=9e-10 Score=86.75 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=67.2
Q ss_pred CCCCcceEEEcCCCCC-CCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcC-hHHHHHHHHh---CCceeCCeE
Q 038933 105 TEINTKKIFVGGLPLD-IKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDS-EDAANNVLQT---RFHKLKYKM 179 (347)
Q Consensus 105 ~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~-~e~a~~Al~~---~~~~i~g~~ 179 (347)
...+...|||+||++. +++++|+++|++||.|.+|.+.++.. .|||+|.+ .++|..|+++ .+..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4466889999999999 99999999999999999999998865 59999999 7889988885 468899988
Q ss_pred EEEEecCC
Q 038933 180 VEVKRSHP 187 (347)
Q Consensus 180 i~v~~a~~ 187 (347)
+.+....-
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 88876653
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1e-09 Score=81.29 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=63.8
Q ss_pred CCcceEEEcCCCC----CCCH----HHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCe
Q 038933 107 INTKKIFVGGLPL----DIKE----EEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYK 178 (347)
Q Consensus 107 ~~~~~l~V~nLp~----~~t~----e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~ 178 (347)
++..+|+|.-++. +... .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+++++..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 3456777777662 2333 6789999999999999999874 8999999999999999999999999
Q ss_pred EEEEEecCCCCC
Q 038933 179 MVEVKRSHPKDR 190 (347)
Q Consensus 179 ~i~v~~a~~~~~ 190 (347)
.|+|..+++.-.
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999987643
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2.5e-09 Score=84.24 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcc-hhHHHHHHHhcC---ceEeCeEe
Q 038933 3 PVSLRKLFVGGVSRE-TNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTK-ISMAEDALQHKH---HVILGKEV 77 (347)
Q Consensus 3 ~~~~r~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~-~~~a~~Al~~~~---~~~~gr~i 77 (347)
-.....|+|+||+++ +++++|+++|++||+|..|.+.++.. .|||+|.+ +++|++|+..++ ..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345678999999999 99999999999999999999999873 59999999 789999999863 46677666
Q ss_pred eeeec
Q 038933 78 EVKKA 82 (347)
Q Consensus 78 ~v~~a 82 (347)
.++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66544
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-08 Score=75.61 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCC----CCcH----HHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeE
Q 038933 5 SLRKLFVGGVSR----ETNE----ETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKE 76 (347)
Q Consensus 5 ~~r~l~V~nLp~----~~te----~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~ 76 (347)
+.-||+|.-.|. ++-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++.++..+.||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 445777777662 3333 6799999999999999999976 89999999999999996668999999
Q ss_pred eeeeecccC
Q 038933 77 VEVKKAIPK 85 (347)
Q Consensus 77 i~v~~a~~~ 85 (347)
|.|+.+++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998754
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.1e-08 Score=76.05 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=62.5
Q ss_pred CCCcceEEEcCCCCC-----CCH----HHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeC
Q 038933 106 EINTKKIFVGGLPLD-----IKE----EEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLK 176 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~-----~t~----e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~ 176 (347)
.++..+|+|.-++.. ... .+|.+.|++||.|..+++..|+ +||+|.+.++|.+||++++..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 355678999888743 222 5689999999999999999873 99999999999999999999999
Q ss_pred CeEEEEEecCC
Q 038933 177 YKMVEVKRSHP 187 (347)
Q Consensus 177 g~~i~v~~a~~ 187 (347)
||.|+|+.-.+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999987543
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=7.3e-08 Score=84.37 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCHHHHHHhhhcCceeEeecccccC----CCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEEEecCC
Q 038933 121 IKEEEFKSYFESFGTVTDAPVICDK----ETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEVKRSHP 187 (347)
Q Consensus 121 ~t~e~L~~~F~~~G~v~~v~i~~~~----~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v~~a~~ 187 (347)
-.+++|++.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|++. ++..++||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568999999999999999998554 4458999999999999999999985 99999999999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=6.4e-08 Score=71.94 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=59.8
Q ss_pred CCCeEEEcCCCCC-----CcH----HHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCe
Q 038933 5 SLRKLFVGGVSRE-----TNE----ETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGK 75 (347)
Q Consensus 5 ~~r~l~V~nLp~~-----~te----~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr 75 (347)
+.-||+|.-++.+ +-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++.++..+.||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4568888888743 222 5689999999999999999986 9999999999999999666899999
Q ss_pred Eeeeeecc
Q 038933 76 EVEVKKAI 83 (347)
Q Consensus 76 ~i~v~~a~ 83 (347)
.|.|....
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.50 E-value=1.3e-07 Score=82.70 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=58.7
Q ss_pred CcHHHHHHHhccCCCeEEEEEEecC----CCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeeeeeccc
Q 038933 18 TNEETLREYFSQYGTVEETLIIRSR----LTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEVKKAIP 84 (347)
Q Consensus 18 ~te~~L~~~F~~~G~v~~v~i~~~~----~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v~~a~~ 84 (347)
-.+++|++.|++||.|.++.|.++. .+++++|++||+|.+.++|++|++.++ ..+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4678999999999999999998654 345899999999999999999999977 678999999998743
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=3.7e-07 Score=68.68 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC-----CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeCeEee
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY-----GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILGKEVE 78 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~gr~i~ 78 (347)
...++|.|.|||.++.++.|+-+|++- |+|.+++... +-|+|+|.+.+.|++.|+...+.+++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 346899999999999999999999872 5888887765 269999999999999999988899999999
Q ss_pred eeecccCCCccccCCCCCCCCCCCCCCCCCcceEEEcCCCCCCC
Q 038933 79 VKKAIPKGHKLEESNGHSGNCVGDDDTEINTKKIFVGGLPLDIK 122 (347)
Q Consensus 79 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 122 (347)
|.+..+. ...+|++.+|++.++
T Consensus 78 V~P~~~~----------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR----------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC----------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC----------------------CcceEeeecCCCCCC
Confidence 9875432 355788888888765
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.3e-06 Score=64.07 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC-----CCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh-cCceEeCeEe
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQY-----GTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH-KHHVILGKEV 77 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~-~~~~~~gr~i 77 (347)
.+.|+|-+-|||..++++.|+.+.+.+ |.+..|.+..|- +-|+|+|.|..+|.||.-. .+.+|.||+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 458999999999999999999999999 999999999986 4699999999999998755 5578999999
Q ss_pred eeeec
Q 038933 78 EVKKA 82 (347)
Q Consensus 78 ~v~~a 82 (347)
.+...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98754
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=6.9e-06 Score=62.30 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=63.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcC-----ceeEeecccccCCCCCceeEEEEEEcChHHHHHHHH-hCCceeCCeEEE
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESF-----GTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQ-TRFHKLKYKMVE 181 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~-----G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~-~~~~~i~g~~i~ 181 (347)
..++|-+-|||..+++..|+.+.+++ |.++.|.+..|.. =|+|+|.|..+|.+|.- .++.+|+|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36788899999999999999999999 9999999988865 69999999999988864 599999999999
Q ss_pred EEe
Q 038933 182 VKR 184 (347)
Q Consensus 182 v~~ 184 (347)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=3.9e-05 Score=57.66 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=64.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhc-----CceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCCeEEEE
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFES-----FGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKYKMVEV 182 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~-----~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g~~i~v 182 (347)
...+|.|.|||..+.++.|+-+|+. =|+|..++... +-|+|+|.+.+.|++.+++..+.|++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4578999999999999999999976 26898887764 2689999999999999998889999999999
Q ss_pred EecCCCCC
Q 038933 183 KRSHPKDR 190 (347)
Q Consensus 183 ~~a~~~~~ 190 (347)
....++..
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 88766654
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.45 E-value=0.0003 Score=52.23 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=47.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
-.+.++| ++|.++...||.++|+.||.| .|+.+.|- .|||.|.+++.|..||+..
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455667 999999999999999999966 57777775 7999999999999999864
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.001 Score=51.53 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcCceEeC-eEeeeeec
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKHHVILG-KEVEVKKA 82 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~~~~~g-r~i~v~~a 82 (347)
.+.+-|.|-+.|.+. ...|.+.|++||.|.+..... ...+-.|.|.+..+|++||.++...+.+ ..|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 456789999999884 678888999999998877621 2258999999999999999998877774 67788876
Q ss_pred cc
Q 038933 83 IP 84 (347)
Q Consensus 83 ~~ 84 (347)
..
T Consensus 95 ~d 96 (119)
T 1wwh_A 95 ID 96 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.26 E-value=0.00098 Score=49.45 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=47.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh
Q 038933 104 DTEINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 104 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
......+.++| ++|..+...||.++|+.||.| .|.++-|. .|||.|.+++.|..|+.+
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34455667777 999999999999999999844 46666553 799999999999999874
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.0016 Score=50.44 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=60.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHhCCceeCC-eEEEEEe
Q 038933 106 EINTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQTRFHKLKY-KMVEVKR 184 (347)
Q Consensus 106 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~~~~~i~g-~~i~v~~ 184 (347)
.....-|.|-+.|... .+.|..+|++||.|.+...... ...-.|.|++..+|++||.+|+..|++ -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3456789999999986 5667788999999988776222 238899999999999999999999985 6777887
Q ss_pred cCCCC
Q 038933 185 SHPKD 189 (347)
Q Consensus 185 a~~~~ 189 (347)
...+.
T Consensus 94 ~~d~~ 98 (119)
T 1wwh_A 94 CIDKN 98 (119)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 65443
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.0019 Score=48.72 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=60.5
Q ss_pred cceEEEcCCCCCC-CH----HHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh-CCceeCCeEEEE
Q 038933 109 TKKIFVGGLPLDI-KE----EEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT-RFHKLKYKMVEV 182 (347)
Q Consensus 109 ~~~l~V~nLp~~~-t~----e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~-~~~~i~g~~i~v 182 (347)
.++|+|.||+..+ +. +.++++|..|+++.....++.-. -..|.|.+.++|.+|... ++..++|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5689999998875 22 57789999999887766664421 468999999999999875 999999999999
Q ss_pred EecCCCC
Q 038933 183 KRSHPKD 189 (347)
Q Consensus 183 ~~a~~~~ 189 (347)
..+.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998544
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.12 E-value=0.0026 Score=47.01 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=54.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCC--cceEEEEEEcchhHHHHHHHhcC-ceEe
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGH--GRGFGFVIFTKISMAEDALQHKH-HVIL 73 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~--~kG~aFVeF~~~~~a~~Al~~~~-~~~~ 73 (347)
.+|-|++||+++||+++.+.++....+.....+..+.+.+ .-.-|||.|.+.+++....+..+ +.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5899999999999999999999998888777777654433 12569999999999999998855 4443
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.06 E-value=0.0012 Score=49.18 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=45.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc
Q 038933 8 KLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
.++| ++|.++...||.++|+.||.| .|+.+.|- .|||.|.+++.|..||...
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4555 999999999999999999954 57777774 7999999999999999964
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0046 Score=46.57 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=60.6
Q ss_pred CCeEEEcCCCCCC-c----HHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC-ceEeCeEeee
Q 038933 6 LRKLFVGGVSRET-N----EETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH-HVILGKEVEV 79 (347)
Q Consensus 6 ~r~l~V~nLp~~~-t----e~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~-~~~~gr~i~v 79 (347)
..+|+|.||+.++ + .+.++++|..|+++......+.- .-.-|.|.+.++|.+|-..++ ..+.|++|.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5689999998876 2 36789999999998887777653 247899999999999988866 6899999999
Q ss_pred eeccc
Q 038933 80 KKAIP 84 (347)
Q Consensus 80 ~~a~~ 84 (347)
..+.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.73 E-value=0.0027 Score=47.22 Aligned_cols=53 Identities=19% Similarity=0.407 Sum_probs=44.9
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
.+.++| ++|..+...||.++|+.||.| .|.++-|. .|||.|.+++.|..|+.+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 456677 999999999999999999944 56666654 799999999999999884
No 394
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.58 E-value=3.4e-06 Score=63.73 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=63.7
Q ss_pred cCCCCCCCCCccccCCccccccccccCCCCcceeeceEEeeeecceeeeccccccCccccccceeeeEEEe
Q 038933 273 TADGSNSTGDHASGLEAPATRKLSHIDDLSSLKVGAVTVENQRAGVEFHDSTVLPSTKCKQTGTVSTHIIF 343 (347)
Q Consensus 273 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (347)
..+..+.+.++..++++|.+.+.+.++.+++.+-.++..+.+.+..+.++.+..++.+||||.+.+.+++|
T Consensus 21 ~lp~lP~G~~v~~~~~ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a~~LL~q~PQLAyAl~QalL 91 (109)
T 2l9b_A 21 KFPELPSGIDVNINMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAASLLELCPQLSFVTAELLL 91 (109)
T ss_dssp TCTTCCCCBCCCTTTSCHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHH
Confidence 35566777888888888988999999999999999999999999999999999999999999998877765
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.49 E-value=0.011 Score=43.54 Aligned_cols=66 Identities=9% Similarity=0.133 Sum_probs=50.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCC--CceeEEEEEEcChHHHHHHHHh-CCcee
Q 038933 110 KKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETG--RPRGFGFITFDSEDAANNVLQT-RFHKL 175 (347)
Q Consensus 110 ~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~--~~~G~afV~F~~~e~a~~Al~~-~~~~i 175 (347)
.+|.|++||+.+|++++.+.++....+........+.+. ..-..|||.|.+.+++..-.+. +++.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 478999999999999999999988777665554443322 2334699999999998888775 66665
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.44 E-value=0.0052 Score=48.26 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=56.7
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEe-ecccccCC--------CC-----CceeEEEEEEcChHHHHHHHHhCCce
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTD-APVICDKE--------TG-----RPRGFGFITFDSEDAANNVLQTRFHK 174 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~-v~i~~~~~--------~~-----~~~G~afV~F~~~e~a~~Al~~~~~~ 174 (347)
..-|.|=+.|.+.+.. +-+.|++||.|.+ +...++.. +. .......|+|++..+|.+||..++..
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3467777888776655 5567999999866 43332110 00 12346799999999999999999999
Q ss_pred eCCeEEEEEecCCC
Q 038933 175 LKYKMVEVKRSHPK 188 (347)
Q Consensus 175 i~g~~i~v~~a~~~ 188 (347)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888887543
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.24 E-value=0.0018 Score=62.18 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=45.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
..|.|+|. .|..+++.+|.++|++||+|.++.+..++ | -||.|||.+.+++++++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhcc
Confidence 46899997 79999999999999999999999888765 2 59999999999999888763
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.08 E-value=0.0099 Score=44.21 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=46.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCc--ceEEEEEEcchhHHHHHHHhcC
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHG--RGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~--kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
.+-+|-||.||+.+||+++.+.++..=++.....+..+.+.+. -.-|||.|.+.+++....+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 3568999999999999999888876644443333332222211 1458999999999999999865
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.76 E-value=0.022 Score=42.36 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=47.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCC--ceeEEEEEEcChHHHHHHHHh-CCcee
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGR--PRGFGFITFDSEDAANNVLQT-RFHKL 175 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~--~~G~afV~F~~~e~a~~Al~~-~~~~i 175 (347)
.+.+|.|+.||+.+|++++.+.++..=++........+.+.+ .-..|||.|.+.+++..-.+. +++.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 356899999999999999988887654544433333322221 123589999999998888775 66554
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.41 E-value=0.0059 Score=58.62 Aligned_cols=56 Identities=16% Similarity=0.400 Sum_probs=42.9
Q ss_pred cceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh
Q 038933 109 TKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 109 ~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
.+.|+|. .|..+++.+|.++|++||+|.++.+.+++ | -||.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 4689998 79999999999999999999999887653 2 5999999999999988765
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.21 E-value=0.018 Score=45.13 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEE-EEEec--------CCCC-----CcceEEEEEEcchhHHHHHHHhcCc
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEET-LIIRS--------RLTG-----HGRGFGFVIFTKISMAEDALQHKHH 70 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~--------~~tg-----~~kG~aFVeF~~~~~a~~Al~~~~~ 70 (347)
...-|.|-+.|.+.+ ..|.+.|++||.|.+- .+.++ +... ...+...|.|.++.+|.+||.+++.
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 345678889977654 5667789999998652 11110 0001 1246789999999999999999999
Q ss_pred eEeCeEeeeeeccc
Q 038933 71 VILGKEVEVKKAIP 84 (347)
Q Consensus 71 ~~~gr~i~v~~a~~ 84 (347)
.|.|.-|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888888754
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.33 E-value=0.66 Score=45.12 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 6 LRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 6 ~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
.+.++|+ +|..+...+|.++|+.||.| +|+.+.+. .|||.|.+.+.|..+++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456665 99999999999999999965 57666654 79999999999999998753
No 403
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=86.29 E-value=0.006 Score=50.40 Aligned_cols=72 Identities=13% Similarity=-0.025 Sum_probs=58.7
Q ss_pred CcCCCCCCCCCccccCCccccccccccCCCCcceeeceEEeeeecceeeeccccccCccccccceeeeEEEe
Q 038933 272 STADGSNSTGDHASGLEAPATRKLSHIDDLSSLKVGAVTVENQRAGVEFHDSTVLPSTKCKQTGTVSTHIIF 343 (347)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (347)
+..+..+.+.++..+|+.|...+..+++.+++.+-.++..+...+..+.++.+..++.+||||.+..++++|
T Consensus 25 ~~lp~LP~G~~~~~~~t~pd~~IS~~Ls~lpp~QL~eiL~qmK~l~~~nP~~ar~LL~~nPQLayAl~QAlL 96 (174)
T 4eba_G 25 VKFPWLPVGVDVNINMTTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLL 96 (174)
T ss_dssp ---CCCCCCBCCCTTTCCHHHHHHHHHTTSCHHHHHHHHHHHHHGGGC--CCHHHHHHSCTHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCcCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHH
Confidence 344556666677788877887899999999999999999999999999999999999999999998877654
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.66 E-value=2.1 Score=41.63 Aligned_cols=55 Identities=18% Similarity=0.381 Sum_probs=43.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh
Q 038933 107 INTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT 170 (347)
Q Consensus 107 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~ 170 (347)
.....++|+ +|..+...+|.+.|+.||.| +|.++.+. .|||.|.+.+.|..++..
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 345666666 88888999999999999954 56555442 699999999999988874
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=48.25 E-value=73 Score=22.81 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=45.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHh
Q 038933 5 SLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQH 67 (347)
Q Consensus 5 ~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~ 67 (347)
..+-|.|-|+|..+-..++.-.....|.--.+..+. |.|.|.|.+.++...|+++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHH
Confidence 456788999999999999988888888655565543 4699999999999999886
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=45.29 E-value=42 Score=22.07 Aligned_cols=59 Identities=8% Similarity=-0.032 Sum_probs=45.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhcC
Q 038933 4 VSLRKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 4 ~~~r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
....++.|.++.-.--...|++.+.+ -.|..+.+-... +-+.|+|.+.++..++++..+
T Consensus 4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHHTT
T ss_pred cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHHcC
Confidence 34567899999888888999999999 888777765432 467888886777778887655
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.61 E-value=74 Score=22.63 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=41.1
Q ss_pred EEEcCCCCCCcHHHHHHHhcc-CC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc
Q 038933 9 LFVGGVSRETNEETLREYFSQ-YG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 9 l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
-|+--....++..+|++.+++ |+ .|..|..+..+ .+. --|||.+....+|.....+.
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHHhh
Confidence 444556778999999999987 45 67777777654 222 24999999888887766554
No 408
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=29.12 E-value=1.1e+02 Score=21.56 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=40.1
Q ss_pred EEEcCCCCCCcHHHHHHHhcc-CC-CeEEEEEEecCCCCCcceEEEEEEcchhHHHHHHHhc
Q 038933 9 LFVGGVSRETNEETLREYFSQ-YG-TVEETLIIRSRLTGHGRGFGFVIFTKISMAEDALQHK 68 (347)
Q Consensus 9 l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~tg~~kG~aFVeF~~~~~a~~Al~~~ 68 (347)
-|+-.....++..+|++.+++ |+ .|..|..+..+ .+ .--|+|.+....+|.......
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~~~ki 82 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEVASRI 82 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHHHHhh
Confidence 445556788999999999986 45 67777777755 22 125999998887766655443
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.16 E-value=1.1e+02 Score=24.69 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=36.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHhh--hcCceeEeecccccCCCCCceeEEEEEEcC-hHHHHHHHH
Q 038933 111 KIFVGGLPLD---------IKEEEFKSYF--ESFGTVTDAPVICDKETGRPRGFGFITFDS-EDAANNVLQ 169 (347)
Q Consensus 111 ~l~V~nLp~~---------~t~e~L~~~F--~~~G~v~~v~i~~~~~~~~~~G~afV~F~~-~e~a~~Al~ 169 (347)
.+.|-|+|.. .+..+|++.| +.|.+++ ++.+..+ .-.+|+|.|+|.+ ..-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4566777752 3447899977 8997765 4444443 3478899999966 344444443
No 410
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.52 E-value=1.7e+02 Score=18.73 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=43.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCeEEEEEEecCCCCCcceEEEEEEc----chhHHHHHHHhcC
Q 038933 7 RKLFVGGVSRETNEETLREYFSQYGTVEETLIIRSRLTGHGRGFGFVIFT----KISMAEDALQHKH 69 (347)
Q Consensus 7 r~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~kG~aFVeF~----~~~~a~~Al~~~~ 69 (347)
.++.|.++.-.--...|++.+.+...|..+.+-... +-+.|+|. +.++..++++..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 64 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDAG 64 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHCC
Confidence 468888998877888999999998888888776543 36888885 4566777777655
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.28 E-value=2.3e+02 Score=20.20 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=51.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHhhhcCceeEeecccccCCCCCceeEEEEEEcChHHHHHHHHh----CC----ceeCCeE
Q 038933 108 NTKKIFVGGLPLDIKEEEFKSYFESFGTVTDAPVICDKETGRPRGFGFITFDSEDAANNVLQT----RF----HKLKYKM 179 (347)
Q Consensus 108 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~e~a~~Al~~----~~----~~i~g~~ 179 (347)
....|.|-|+|..+-..++.-...-.|---.+..+ .|.|.+.|.+.++..-|+.+ +. .++.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 35678899999999988887766666654455444 24699999999999888875 22 3467777
Q ss_pred EEEEecCCC
Q 038933 180 VEVKRSHPK 188 (347)
Q Consensus 180 i~v~~a~~~ 188 (347)
+.|-...|.
T Consensus 83 cdvistipe 91 (129)
T 4eyt_A 83 CDVISTIPE 91 (129)
T ss_dssp EEEECCCCH
T ss_pred eeeeecCCc
Confidence 766544443
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.28 E-value=2.2e+02 Score=20.07 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=19.5
Q ss_pred cceEEEEEEcchhHHHHHHHhcC
Q 038933 47 GRGFGFVIFTKISMAEDALQHKH 69 (347)
Q Consensus 47 ~kG~aFVeF~~~~~a~~Al~~~~ 69 (347)
..||-||++...++...++....
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCT
T ss_pred cCCEEEEEEecchhHHHHHHCCC
Confidence 67999999999998888887644
No 413
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=20.73 E-value=21 Score=32.76 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=7.5
Q ss_pred CCCHHHHHHhhhc
Q 038933 120 DIKEEEFKSYFES 132 (347)
Q Consensus 120 ~~t~e~L~~~F~~ 132 (347)
.+++++|++....
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4566666665543
Done!