Query 038935
Match_columns 75
No_of_seqs 175 out of 1334
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03059 GST_N_SspA GST_N famil 99.9 4.4E-26 9.6E-31 112.0 8.8 71 4-75 1-71 (73)
2 cd03052 GST_N_GDAP1 GST_N fami 99.9 6.5E-26 1.4E-30 111.9 8.6 70 4-74 1-73 (73)
3 PF13417 GST_N_3: Glutathione 99.9 1.1E-25 2.4E-30 111.5 8.7 69 6-75 1-69 (75)
4 cd03045 GST_N_Delta_Epsilon GS 99.9 1.3E-25 2.9E-30 110.6 8.9 71 4-75 1-74 (74)
5 cd03041 GST_N_2GST_N GST_N fam 99.9 7.3E-26 1.6E-30 112.7 8.0 71 4-75 2-75 (77)
6 cd03060 GST_N_Omega_like GST_N 99.9 3.7E-25 8.1E-30 108.5 8.6 68 5-73 2-70 (71)
7 cd03058 GST_N_Tau GST_N family 99.9 5.1E-25 1.1E-29 108.7 8.6 72 4-75 1-72 (74)
8 cd03076 GST_N_Pi GST_N family, 99.9 8.1E-25 1.7E-29 107.9 7.6 72 3-75 1-72 (73)
9 PRK09481 sspA stringent starva 99.9 7.4E-25 1.6E-29 125.8 8.6 72 3-75 10-81 (211)
10 cd03037 GST_N_GRX2 GST_N famil 99.9 1.4E-24 3.1E-29 106.3 8.1 70 4-75 1-71 (71)
11 cd03055 GST_N_Omega GST_N fami 99.9 2.4E-24 5.1E-29 109.8 8.7 71 3-74 18-89 (89)
12 cd03061 GST_N_CLIC GST_N famil 99.9 1.8E-24 3.8E-29 110.4 8.0 65 10-75 20-84 (91)
13 cd03056 GST_N_4 GST_N family, 99.9 2.9E-24 6.3E-29 105.4 8.6 70 4-74 1-73 (73)
14 cd03053 GST_N_Phi GST_N family 99.9 4.3E-24 9.4E-29 105.7 9.1 71 4-75 2-75 (76)
15 cd03051 GST_N_GTT2_like GST_N 99.9 3.9E-24 8.5E-29 105.0 7.9 70 4-74 1-74 (74)
16 cd03049 GST_N_3 GST_N family, 99.9 6.1E-24 1.3E-28 104.6 7.9 70 4-74 1-73 (73)
17 cd03039 GST_N_Sigma_like GST_N 99.9 5.1E-24 1.1E-28 104.6 7.3 71 4-75 1-72 (72)
18 cd03044 GST_N_EF1Bgamma GST_N 99.9 8.3E-24 1.8E-28 104.7 8.0 70 5-75 2-74 (75)
19 cd03050 GST_N_Theta GST_N fami 99.9 2.4E-23 5.2E-28 103.2 8.8 71 4-75 1-74 (76)
20 cd03040 GST_N_mPGES2 GST_N fam 99.9 1.2E-23 2.7E-28 104.4 7.3 70 3-75 1-74 (77)
21 cd03042 GST_N_Zeta GST_N famil 99.9 2.9E-23 6.3E-28 101.9 8.4 70 4-74 1-73 (73)
22 PRK15113 glutathione S-transfe 99.9 2.2E-23 4.7E-28 120.0 9.1 72 3-75 5-81 (214)
23 cd03047 GST_N_2 GST_N family, 99.9 3.6E-23 7.7E-28 101.9 8.6 70 4-74 1-73 (73)
24 cd03048 GST_N_Ure2p_like GST_N 99.9 8.1E-23 1.8E-27 102.3 8.5 70 4-75 2-77 (81)
25 PLN02473 glutathione S-transfe 99.9 9.5E-23 2.1E-27 117.0 8.6 73 1-75 1-76 (214)
26 cd00570 GST_N_family Glutathio 99.9 3.2E-22 6.8E-27 96.5 8.4 70 4-74 1-71 (71)
27 KOG0406 Glutathione S-transfer 99.9 2.7E-22 5.8E-27 116.1 8.3 73 3-75 9-81 (231)
28 cd03046 GST_N_GTT1_like GST_N 99.9 6E-22 1.3E-26 97.9 8.3 70 4-75 1-73 (76)
29 cd03057 GST_N_Beta GST_N famil 99.9 6.6E-22 1.4E-26 98.1 8.2 70 4-75 1-74 (77)
30 PF02798 GST_N: Glutathione S- 99.9 1.1E-21 2.3E-26 97.5 8.8 70 5-75 2-76 (76)
31 PF13409 GST_N_2: Glutathione 99.9 4.1E-22 8.8E-27 97.6 7.1 64 11-75 1-69 (70)
32 cd03075 GST_N_Mu GST_N family, 99.9 9.1E-22 2E-26 99.0 8.1 70 5-75 2-80 (82)
33 KOG0868 Glutathione S-transfer 99.9 1.3E-22 2.9E-27 113.1 5.1 72 3-75 5-80 (217)
34 cd03077 GST_N_Alpha GST_N fami 99.9 1.7E-21 3.8E-26 97.3 8.2 69 3-75 1-74 (79)
35 COG0625 Gst Glutathione S-tran 99.9 8E-22 1.7E-26 113.1 7.7 71 4-75 1-74 (211)
36 cd03080 GST_N_Metaxin_like GST 99.9 2.5E-21 5.4E-26 95.8 7.9 64 4-75 2-72 (75)
37 PLN02395 glutathione S-transfe 99.9 3.3E-21 7.1E-26 110.6 8.8 72 1-75 1-75 (215)
38 PRK13972 GSH-dependent disulfi 99.9 3.2E-21 7E-26 110.9 8.5 70 4-75 2-81 (215)
39 PLN02378 glutathione S-transfe 99.9 1.9E-21 4.2E-26 111.9 7.6 66 9-75 17-82 (213)
40 PRK10387 glutaredoxin 2; Provi 99.9 2.7E-21 5.8E-26 110.6 7.7 70 4-75 1-71 (210)
41 cd03038 GST_N_etherase_LigE GS 99.9 3.9E-21 8.5E-26 96.8 7.2 64 10-75 14-81 (84)
42 cd03043 GST_N_1 GST_N family, 99.9 1.9E-20 4.2E-25 92.3 8.9 65 9-74 7-73 (73)
43 PRK10357 putative glutathione 99.8 4.6E-21 9.9E-26 109.2 7.3 71 4-75 1-72 (202)
44 TIGR00862 O-ClC intracellular 99.8 6.7E-21 1.5E-25 111.3 8.0 65 10-75 17-81 (236)
45 cd03054 GST_N_Metaxin GST_N fa 99.8 4.5E-20 9.7E-25 90.6 8.2 63 5-75 2-71 (72)
46 TIGR01262 maiA maleylacetoacet 99.8 1.9E-20 4.1E-25 107.1 6.8 70 5-75 1-74 (210)
47 TIGR02182 GRXB Glutaredoxin, G 99.8 3E-20 6.5E-25 106.8 7.4 69 5-75 1-70 (209)
48 PTZ00057 glutathione s-transfe 99.8 5.6E-20 1.2E-24 105.3 8.4 72 1-75 1-81 (205)
49 PLN02817 glutathione dehydroge 99.8 4.4E-20 9.6E-25 109.4 7.4 66 9-75 70-135 (265)
50 PRK10542 glutathionine S-trans 99.8 5.3E-20 1.1E-24 104.7 6.9 70 4-75 1-75 (201)
51 TIGR02190 GlrX-dom Glutaredoxi 99.8 1.7E-19 3.6E-24 90.1 7.9 71 3-74 9-79 (79)
52 PRK11752 putative S-transferas 99.8 1.4E-19 3E-24 107.2 8.3 71 3-75 44-127 (264)
53 KOG0867 Glutathione S-transfer 99.8 2.1E-19 4.5E-24 104.5 7.9 72 3-75 2-76 (226)
54 PRK10638 glutaredoxin 3; Provi 99.8 6.4E-19 1.4E-23 88.7 8.3 73 1-74 1-74 (83)
55 cd03029 GRX_hybridPRX5 Glutare 99.8 1.5E-18 3.2E-23 85.2 8.4 71 3-74 2-72 (72)
56 KOG1695 Glutathione S-transfer 99.8 2.8E-18 6.1E-23 98.4 7.5 74 1-75 1-74 (206)
57 cd03027 GRX_DEP Glutaredoxin ( 99.7 2.3E-16 5.1E-21 77.5 7.6 68 3-71 2-70 (73)
58 PRK10329 glutaredoxin-like pro 99.7 7E-16 1.5E-20 77.4 7.1 62 3-65 2-63 (81)
59 cd03418 GRX_GRXb_1_3_like Glut 99.7 1.3E-15 2.9E-20 74.9 7.9 71 3-74 1-73 (75)
60 cd03079 GST_N_Metaxin2 GST_N f 99.7 1E-15 2.2E-20 75.5 7.2 59 10-75 15-73 (74)
61 COG0695 GrxC Glutaredoxin and 99.7 1.5E-15 3.2E-20 76.1 7.9 68 3-71 2-72 (80)
62 cd02066 GRX_family Glutaredoxi 99.6 3.5E-15 7.5E-20 72.2 7.9 69 3-72 1-70 (72)
63 TIGR02196 GlrX_YruB Glutaredox 99.6 3.4E-15 7.3E-20 72.6 7.4 70 3-73 1-73 (74)
64 COG2999 GrxB Glutaredoxin 2 [P 99.6 5.1E-16 1.1E-20 86.9 4.6 70 4-75 1-71 (215)
65 KOG4420 Uncharacterized conser 99.6 2.9E-16 6.2E-21 92.2 3.1 71 4-75 27-100 (325)
66 TIGR02181 GRX_bact Glutaredoxi 99.6 9.8E-15 2.1E-19 72.6 7.5 70 4-74 1-71 (79)
67 TIGR02189 GlrX-like_plant Glut 99.6 3.6E-14 7.8E-19 73.5 8.9 70 3-73 9-82 (99)
68 PRK11200 grxA glutaredoxin 1; 99.6 2.4E-14 5.3E-19 72.2 7.7 73 3-75 2-81 (85)
69 PHA03050 glutaredoxin; Provisi 99.6 4.9E-14 1.1E-18 74.1 8.6 68 3-71 14-88 (108)
70 PF00462 Glutaredoxin: Glutare 99.6 1.2E-14 2.6E-19 69.0 5.2 59 4-63 1-60 (60)
71 TIGR02194 GlrX_NrdH Glutaredox 99.6 2.3E-14 5E-19 70.3 6.4 57 4-61 1-57 (72)
72 cd02976 NrdH NrdH-redoxin (Nrd 99.6 3.5E-14 7.5E-19 68.9 6.7 63 3-66 1-64 (73)
73 TIGR02200 GlrX_actino Glutared 99.6 7.4E-14 1.6E-18 68.7 7.8 72 3-75 1-77 (77)
74 cd03419 GRX_GRXh_1_2_like Glut 99.5 1.9E-13 4.1E-18 68.1 9.0 71 3-74 1-75 (82)
75 TIGR02183 GRXA Glutaredoxin, G 99.5 1E-13 2.3E-18 70.1 7.8 72 4-75 2-80 (86)
76 TIGR00365 monothiol glutaredox 99.5 2.9E-13 6.2E-18 69.9 8.0 70 3-73 13-88 (97)
77 KOG3029 Glutathione S-transfer 99.5 1.2E-13 2.7E-18 82.1 7.3 69 3-74 90-158 (370)
78 KOG1422 Intracellular Cl- chan 99.5 2E-13 4.4E-18 78.0 7.2 65 10-75 19-83 (221)
79 cd03028 GRX_PICOT_like Glutare 99.5 5.6E-13 1.2E-17 68.0 8.0 71 3-74 9-85 (90)
80 cd03078 GST_N_Metaxin1_like GS 99.5 9.1E-13 2E-17 64.9 8.0 57 11-75 15-71 (73)
81 TIGR02180 GRX_euk Glutaredoxin 99.4 2.9E-12 6.2E-17 64.0 8.8 70 4-74 1-76 (84)
82 PRK12759 bifunctional gluaredo 99.4 1.5E-12 3.2E-17 81.4 8.4 70 1-71 1-79 (410)
83 PRK10824 glutaredoxin-4; Provi 99.4 1.1E-11 2.5E-16 65.7 7.7 70 3-73 16-91 (115)
84 cd03031 GRX_GRX_like Glutaredo 99.3 4.7E-11 1E-15 65.7 7.9 70 3-73 1-81 (147)
85 KOG1752 Glutaredoxin and relat 99.2 4.8E-10 1E-14 58.5 8.7 70 3-73 15-88 (104)
86 PLN02907 glutamate-tRNA ligase 99.2 1.7E-10 3.8E-15 76.2 7.2 60 1-75 1-61 (722)
87 PTZ00062 glutaredoxin; Provisi 99.2 4.6E-10 9.9E-15 64.8 7.9 70 3-73 114-189 (204)
88 cd02973 TRX_GRX_like Thioredox 99.0 5.3E-09 1.1E-13 50.2 6.5 58 3-64 2-64 (67)
89 COG4545 Glutaredoxin-related p 99.0 4.6E-09 9.9E-14 51.5 5.6 63 1-64 1-77 (85)
90 KOG4244 Failed axon connection 98.8 1.5E-08 3.3E-13 60.1 5.8 63 4-74 46-115 (281)
91 cd03030 GRX_SH3BGR Glutaredoxi 98.8 1.1E-07 2.3E-12 48.8 7.8 68 4-72 2-80 (92)
92 cd03036 ArsC_like Arsenate Red 98.8 2.8E-08 6E-13 52.4 5.0 35 4-38 1-35 (111)
93 cd02977 ArsC_family Arsenate R 98.7 5.3E-08 1.2E-12 50.7 5.3 34 4-37 1-34 (105)
94 PRK01655 spxA transcriptional 98.7 4.5E-08 9.9E-13 53.0 5.2 34 4-37 2-35 (131)
95 PF10568 Tom37: Outer mitochon 98.7 3E-07 6.6E-12 45.1 7.0 56 11-74 13-72 (72)
96 cd03032 ArsC_Spx Arsenate Redu 98.7 1.1E-07 2.3E-12 50.5 5.5 34 4-37 2-35 (115)
97 PRK12559 transcriptional regul 98.6 2.7E-07 5.7E-12 50.1 5.8 34 4-37 2-35 (131)
98 PRK13344 spxA transcriptional 98.6 2.5E-07 5.4E-12 50.2 5.7 34 4-37 2-35 (132)
99 TIGR01617 arsC_related transcr 98.6 1.8E-07 3.8E-12 49.7 4.7 34 4-37 1-34 (117)
100 PRK10026 arsenate reductase; P 98.5 3.9E-07 8.5E-12 50.0 5.7 37 1-37 1-37 (141)
101 TIGR00412 redox_disulf_2 small 98.5 1.6E-06 3.5E-11 42.7 7.2 55 4-64 3-61 (76)
102 PF05768 DUF836: Glutaredoxin- 98.5 5E-06 1.1E-10 41.5 8.3 55 3-60 1-57 (81)
103 cd03035 ArsC_Yffb Arsenate Red 98.5 6.9E-07 1.5E-11 46.8 5.3 34 4-37 1-34 (105)
104 cd03033 ArsC_15kD Arsenate Red 98.4 1.1E-06 2.3E-11 46.6 5.3 35 3-37 1-35 (113)
105 COG1393 ArsC Arsenate reductas 98.3 3.1E-06 6.8E-11 45.1 5.7 35 3-37 2-36 (117)
106 TIGR00411 redox_disulf_1 small 98.3 8.3E-06 1.8E-10 40.1 6.9 57 3-61 2-62 (82)
107 COG0278 Glutaredoxin-related p 98.3 6.3E-06 1.4E-10 42.6 5.9 70 3-73 16-92 (105)
108 PHA02125 thioredoxin-like prot 98.2 1.2E-05 2.6E-10 39.5 6.2 52 4-59 2-53 (75)
109 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 1.3E-05 2.8E-10 40.7 6.3 58 3-64 15-77 (89)
110 PRK10853 putative reductase; P 98.2 6.6E-06 1.4E-10 43.9 5.1 34 4-37 2-35 (118)
111 TIGR01616 nitro_assoc nitrogen 98.2 7.7E-06 1.7E-10 44.1 5.4 35 3-37 2-36 (126)
112 cd01659 TRX_superfamily Thiore 98.1 1.8E-05 3.9E-10 36.0 5.2 54 4-58 1-59 (69)
113 TIGR00014 arsC arsenate reduct 98.1 1.7E-05 3.8E-10 42.0 5.3 34 4-37 1-34 (114)
114 PF04908 SH3BGR: SH3-binding, 98.1 4.7E-05 1E-09 39.5 6.7 70 1-72 1-86 (99)
115 cd03034 ArsC_ArsC Arsenate Red 98.1 2E-05 4.4E-10 41.6 5.3 34 4-37 1-34 (112)
116 PF13192 Thioredoxin_3: Thiore 98.0 5.2E-05 1.1E-09 37.3 6.0 56 4-65 3-62 (76)
117 KOG0911 Glutaredoxin-related p 97.7 0.00019 4E-09 42.1 5.4 63 10-73 152-215 (227)
118 TIGR01295 PedC_BrcD bacterioci 97.5 0.0016 3.5E-08 34.8 6.9 57 4-61 27-101 (122)
119 PF03960 ArsC: ArsC family; I 97.3 0.00054 1.2E-08 35.9 4.0 31 7-37 1-31 (110)
120 PF11287 DUF3088: Protein of u 97.2 0.0016 3.4E-08 34.5 4.7 65 11-75 23-105 (112)
121 cd02949 TRX_NTR TRX domain, no 97.1 0.0078 1.7E-07 30.5 6.9 57 4-62 17-79 (97)
122 cd02975 PfPDO_like_N Pyrococcu 97.1 0.0034 7.4E-08 33.0 5.6 52 4-57 25-80 (113)
123 TIGR02187 GlrX_arch Glutaredox 97.0 0.0056 1.2E-07 35.6 6.6 54 3-58 136-192 (215)
124 TIGR03143 AhpF_homolog putativ 97.0 0.0042 9.1E-08 40.8 6.5 57 3-63 479-540 (555)
125 PRK15317 alkyl hydroperoxide r 96.9 0.0014 3E-08 42.6 3.7 59 3-65 119-182 (517)
126 TIGR03140 AhpF alkyl hydropero 96.9 0.0014 3.1E-08 42.5 3.5 59 3-65 120-183 (515)
127 cd02947 TRX_family TRX family; 96.9 0.014 3.1E-07 28.3 7.0 54 4-61 14-74 (93)
128 KOG2824 Glutaredoxin-related p 96.9 0.0041 9E-08 37.6 5.0 69 4-72 133-211 (281)
129 KOG3027 Mitochondrial outer me 96.8 0.0068 1.5E-07 35.6 5.3 57 11-74 33-89 (257)
130 PF00085 Thioredoxin: Thioredo 96.7 0.0073 1.6E-07 30.4 4.7 69 4-74 21-101 (103)
131 COG0435 ECM4 Predicted glutath 96.6 0.017 3.6E-07 35.4 6.5 71 3-74 51-154 (324)
132 PHA02278 thioredoxin-like prot 96.6 0.033 7.1E-07 29.0 7.7 59 4-63 18-85 (103)
133 cd02985 TRX_CDSP32 TRX family, 96.6 0.033 7.2E-07 28.6 6.7 59 4-63 19-84 (103)
134 cd02953 DsbDgamma DsbD gamma f 96.5 0.025 5.5E-07 28.9 6.0 52 4-57 15-77 (104)
135 cd02989 Phd_like_TxnDC9 Phosdu 96.4 0.048 1E-06 28.7 7.2 58 4-63 26-88 (113)
136 cd02984 TRX_PICOT TRX domain, 96.3 0.044 9.5E-07 27.4 6.2 57 4-62 18-80 (97)
137 COG3019 Predicted metal-bindin 96.3 0.045 9.8E-07 30.2 6.4 69 3-75 27-102 (149)
138 PTZ00051 thioredoxin; Provisio 96.2 0.057 1.2E-06 27.1 6.9 57 4-62 22-83 (98)
139 cd02954 DIM1 Dim1 family; Dim1 96.2 0.044 9.5E-07 29.2 5.8 56 5-62 19-80 (114)
140 cd02951 SoxW SoxW family; SoxW 96.1 0.05 1.1E-06 28.7 6.0 53 4-57 18-89 (125)
141 TIGR02187 GlrX_arch Glutaredox 96.1 0.063 1.4E-06 31.2 6.7 52 4-57 23-82 (215)
142 cd02956 ybbN ybbN protein fami 96.1 0.048 1E-06 27.3 5.6 57 4-62 16-78 (96)
143 KOG2903 Predicted glutathione 96.0 0.055 1.2E-06 33.0 6.3 26 3-28 37-62 (319)
144 TIGR01068 thioredoxin thioredo 95.8 0.093 2E-06 26.1 6.0 68 5-74 19-98 (101)
145 PHA03075 glutaredoxin-like pro 95.7 0.03 6.6E-07 29.9 3.9 36 1-36 1-37 (123)
146 cd02959 ERp19 Endoplasmic reti 95.7 0.13 2.8E-06 27.2 6.5 59 4-63 23-90 (117)
147 cd02963 TRX_DnaJ TRX domain, D 95.7 0.12 2.7E-06 26.8 8.3 69 4-74 28-109 (111)
148 KOG3028 Translocase of outer m 95.7 0.18 3.8E-06 31.3 7.5 56 11-74 16-72 (313)
149 cd02993 PDI_a_APS_reductase PD 95.5 0.14 3.1E-06 26.4 6.6 53 4-57 25-83 (109)
150 cd02957 Phd_like Phosducin (Ph 95.5 0.11 2.3E-06 27.1 5.6 54 5-63 29-89 (113)
151 cd02948 TRX_NDPK TRX domain, T 95.4 0.13 2.9E-06 26.2 5.6 56 4-62 21-83 (102)
152 cd02999 PDI_a_ERp44_like PDIa 95.0 0.12 2.6E-06 26.5 4.8 51 4-57 22-77 (100)
153 KOG3425 Uncharacterized conser 94.8 0.16 3.6E-06 27.4 4.9 60 10-69 43-115 (128)
154 cd02962 TMX2 TMX2 family; comp 94.7 0.2 4.4E-06 27.9 5.4 59 4-63 51-121 (152)
155 cd03003 PDI_a_ERdj5_N PDIa fam 94.5 0.15 3.2E-06 25.8 4.4 52 4-57 22-77 (101)
156 cd03004 PDI_a_ERdj5_C PDIa fam 94.5 0.13 2.9E-06 26.1 4.2 52 4-57 23-78 (104)
157 cd02952 TRP14_like Human TRX-r 94.4 0.38 8.2E-06 25.8 7.0 55 10-65 38-105 (119)
158 PTZ00443 Thioredoxin domain-co 94.4 0.5 1.1E-05 28.0 6.9 57 4-62 56-118 (224)
159 cd02950 TxlA TRX-like protein 94.4 0.42 9.1E-06 26.1 7.1 53 4-57 24-81 (142)
160 PRK09381 trxA thioredoxin; Pro 94.3 0.35 7.6E-06 24.7 7.4 58 4-63 25-88 (109)
161 cd03006 PDI_a_EFP1_N PDIa fami 94.2 0.2 4.3E-06 26.5 4.6 52 4-57 33-89 (113)
162 PF09635 MetRS-N: MetRS-N bind 94.2 0.04 8.7E-07 29.7 1.9 23 52-74 35-59 (122)
163 cd02970 PRX_like2 Peroxiredoxi 94.2 0.12 2.6E-06 27.7 3.8 53 9-63 33-92 (149)
164 cd02998 PDI_a_ERp38 PDIa famil 94.2 0.34 7.3E-06 24.3 5.5 53 4-57 22-80 (105)
165 TIGR01126 pdi_dom protein disu 94.2 0.12 2.5E-06 25.9 3.5 52 4-57 17-74 (102)
166 PRK10996 thioredoxin 2; Provis 94.2 0.46 1E-05 25.8 8.0 69 4-74 56-136 (139)
167 PF14595 Thioredoxin_9: Thiore 94.1 0.037 8.1E-07 30.0 1.7 53 3-57 44-102 (129)
168 cd02996 PDI_a_ERp44 PDIa famil 94.1 0.19 4E-06 25.8 4.2 56 4-61 22-89 (108)
169 PF01323 DSBA: DSBA-like thior 94.0 0.22 4.8E-06 27.9 4.7 36 3-38 1-41 (193)
170 cd02994 PDI_a_TMX PDIa family, 94.0 0.39 8.4E-06 24.2 6.4 70 4-75 20-101 (101)
171 cd02965 HyaE HyaE family; HyaE 94.0 0.23 5E-06 26.3 4.4 59 4-64 31-97 (111)
172 cd03005 PDI_a_ERp46 PDIa famil 93.9 0.23 5E-06 24.9 4.3 52 4-57 20-78 (102)
173 KOG0907 Thioredoxin [Posttrans 93.9 0.48 1E-05 24.8 6.2 57 5-63 26-87 (106)
174 cd03020 DsbA_DsbC_DsbG DsbA fa 93.7 0.15 3.2E-06 29.2 3.8 33 3-35 80-114 (197)
175 COG5494 Predicted thioredoxin/ 93.7 0.5 1.1E-05 28.1 5.8 58 4-63 13-70 (265)
176 cd02997 PDI_a_PDIR PDIa family 93.6 0.47 1E-05 23.8 7.2 53 4-57 21-80 (104)
177 PRK11657 dsbG disulfide isomer 93.6 0.18 3.8E-06 30.3 4.0 31 4-34 121-155 (251)
178 PF13098 Thioredoxin_2: Thiore 93.6 0.13 2.8E-06 26.4 3.1 20 4-23 9-28 (112)
179 PRK10877 protein disulfide iso 93.5 0.24 5.3E-06 29.3 4.5 30 3-32 110-142 (232)
180 PF06110 DUF953: Eukaryotic pr 93.5 0.48 1E-05 25.4 5.2 57 10-67 36-106 (119)
181 cd02955 SSP411 TRX domain, SSP 93.4 0.65 1.4E-05 25.0 6.8 61 5-66 20-97 (124)
182 cd03002 PDI_a_MPD1_like PDI fa 93.3 0.55 1.2E-05 23.8 6.4 53 4-57 22-79 (109)
183 cd02987 Phd_like_Phd Phosducin 93.3 0.85 1.8E-05 25.9 7.4 56 5-63 88-148 (175)
184 PF04134 DUF393: Protein of un 93.1 0.67 1.5E-05 24.0 6.5 65 6-73 1-74 (114)
185 cd02961 PDI_a_family Protein D 93.0 0.55 1.2E-05 23.0 6.5 52 4-57 19-76 (101)
186 cd03017 PRX_BCP Peroxiredoxin 93.0 0.13 2.7E-06 27.5 2.5 49 9-61 33-90 (140)
187 cd03065 PDI_b_Calsequestrin_N 92.0 1.1 2.4E-05 24.0 6.7 46 25-74 64-116 (120)
188 KOG0190 Protein disulfide isom 91.9 1.3 2.9E-05 29.3 6.5 69 4-74 46-129 (493)
189 PF08534 Redoxin: Redoxin; In 91.9 0.53 1.1E-05 25.3 4.2 48 11-60 40-94 (146)
190 cd02972 DsbA_family DsbA famil 91.6 0.41 9E-06 23.3 3.3 34 4-37 1-40 (98)
191 PLN02309 5'-adenylylsulfate re 91.5 1.8 4E-05 28.4 6.8 53 4-57 369-427 (457)
192 cd03000 PDI_a_TMX3 PDIa family 91.4 1.1 2.4E-05 22.8 6.7 52 4-57 19-77 (104)
193 cd02992 PDI_a_QSOX PDIa family 91.2 1.3 2.7E-05 23.2 5.1 53 4-57 23-83 (114)
194 PTZ00102 disulphide isomerase; 91.2 2.7 5.9E-05 27.0 8.7 69 4-74 53-135 (477)
195 KOG0910 Thioredoxin-like prote 91.2 1.6 3.6E-05 24.4 5.6 58 4-63 65-128 (150)
196 TIGR01130 ER_PDI_fam protein d 91.0 2.8 6E-05 26.7 8.2 69 4-74 22-106 (462)
197 cd02995 PDI_a_PDI_a'_C PDIa fa 90.9 1.2 2.5E-05 22.2 5.6 51 4-57 22-78 (104)
198 cd03021 DsbA_GSTK DsbA family, 90.8 0.91 2E-05 26.2 4.6 34 3-36 2-39 (209)
199 cd03001 PDI_a_P5 PDIa family, 90.3 1.4 2.9E-05 22.0 6.1 52 4-57 22-77 (103)
200 PF13728 TraF: F plasmid trans 90.2 2.5 5.5E-05 24.8 6.4 53 4-57 124-188 (215)
201 PRK00293 dipZ thiol:disulfide 90.1 3.2 6.8E-05 28.0 7.1 51 5-57 479-539 (571)
202 PF00578 AhpC-TSA: AhpC/TSA fa 90.1 0.29 6.2E-06 25.4 2.0 52 9-62 35-93 (124)
203 PF09413 DUF2007: Domain of un 90.1 0.61 1.3E-05 22.0 2.9 32 4-35 1-32 (67)
204 cd02986 DLP Dim1 family, Dim1- 89.7 1.6 3.5E-05 23.3 4.6 54 7-62 21-80 (114)
205 COG3011 Predicted thiol-disulf 89.3 2.4 5.2E-05 23.4 7.1 71 3-73 9-83 (137)
206 COG3118 Thioredoxin domain-con 89.3 1.8 4E-05 26.9 5.1 58 4-63 47-110 (304)
207 cd03023 DsbA_Com1_like DsbA fa 88.7 0.67 1.4E-05 24.8 2.8 22 3-24 8-29 (154)
208 TIGR00424 APS_reduc 5'-adenyly 88.3 4.1 8.8E-05 26.9 6.5 53 4-57 375-433 (463)
209 PRK09437 bcp thioredoxin-depen 88.3 0.81 1.8E-05 24.9 3.0 8 10-17 41-48 (154)
210 cd03022 DsbA_HCCA_Iso DsbA fam 88.2 1.5 3.1E-05 24.6 4.1 32 4-35 1-36 (192)
211 PRK13728 conjugal transfer pro 88.2 1.9 4E-05 24.9 4.4 32 4-35 73-108 (181)
212 COG5515 Uncharacterized conser 88.0 0.73 1.6E-05 21.9 2.3 21 4-24 3-27 (70)
213 PRK15412 thiol:disulfide inter 87.9 2.8 6E-05 23.8 5.1 29 6-36 74-105 (185)
214 TIGR02740 TraF-like TraF-like 87.0 5.1 0.00011 24.4 6.3 53 4-57 170-234 (271)
215 cd02988 Phd_like_VIAF Phosduci 86.8 1.5 3.3E-05 25.3 3.6 52 5-63 107-165 (192)
216 cd03024 DsbA_FrnE DsbA family, 86.5 1.6 3.5E-05 24.7 3.6 34 4-37 1-42 (201)
217 cd03009 TryX_like_TryX_NRX Try 86.3 3.4 7.4E-05 21.7 5.5 32 6-37 24-62 (131)
218 cd03018 PRX_AhpE_like Peroxire 85.9 1.4 3E-05 23.7 3.0 11 9-19 38-48 (149)
219 COG2761 FrnE Predicted dithiol 85.7 2.7 5.8E-05 25.2 4.3 27 3-29 7-37 (225)
220 cd03019 DsbA_DsbA DsbA family, 85.7 1.5 3.2E-05 24.2 3.1 33 3-35 18-56 (178)
221 cd02971 PRX_family Peroxiredox 85.4 1.4 3.1E-05 23.3 2.9 48 10-60 33-89 (140)
222 cd03011 TlpA_like_ScsD_MtbDsbE 85.1 1.2 2.6E-05 23.1 2.5 19 5-23 25-43 (123)
223 PRK09266 hypothetical protein; 85.0 2.3 5.1E-05 25.5 4.0 55 19-73 198-254 (266)
224 KOG4023 Uncharacterized conser 84.8 3.5 7.6E-05 21.7 4.0 61 1-62 1-76 (108)
225 PF13462 Thioredoxin_4: Thiore 84.8 1.6 3.6E-05 23.6 3.0 33 3-35 15-55 (162)
226 TIGR01764 excise DNA binding d 84.5 2.3 4.9E-05 18.1 3.4 25 51-75 25-49 (49)
227 cd03012 TlpA_like_DipZ_like Tl 84.5 1.7 3.8E-05 22.8 3.0 17 6-22 29-45 (126)
228 cd02966 TlpA_like_family TlpA- 84.5 2.7 5.8E-05 20.8 3.6 21 4-24 23-43 (116)
229 cd02967 mauD Methylamine utili 84.2 3.9 8.5E-05 20.8 4.2 51 6-57 27-83 (114)
230 cd03008 TryX_like_RdCVF Trypar 84.0 5.5 0.00012 22.1 5.5 19 6-24 31-49 (146)
231 cd04911 ACT_AKiii-YclM-BS_1 AC 83.3 2 4.2E-05 21.3 2.6 22 12-33 15-36 (76)
232 cd03025 DsbA_FrnE_like DsbA fa 82.8 4.1 8.8E-05 22.8 4.2 32 4-35 3-40 (193)
233 cd02960 AGR Anterior Gradient 82.6 1.5 3.2E-05 24.0 2.2 51 4-57 27-84 (130)
234 PF00731 AIRC: AIR carboxylase 82.5 4 8.7E-05 22.9 3.9 27 11-37 12-38 (150)
235 PF06953 ArsD: Arsenical resis 82.5 5.3 0.00011 21.6 4.3 62 1-63 1-83 (123)
236 PF13899 Thioredoxin_7: Thiore 82.3 1.8 3.8E-05 21.1 2.3 51 4-57 21-78 (82)
237 PTZ00102 disulphide isomerase; 82.3 3.7 8E-05 26.4 4.3 21 4-24 379-399 (477)
238 KOG2501 Thioredoxin, nucleored 82.2 4.6 9.9E-05 22.9 4.1 32 7-38 40-78 (157)
239 PF09868 DUF2095: Uncharacteri 80.7 0.82 1.8E-05 24.6 0.8 61 14-74 24-88 (128)
240 cd02982 PDI_b'_family Protein 80.0 5.8 0.00013 19.7 4.2 52 4-57 16-73 (103)
241 PF11823 DUF3343: Protein of u 79.3 5.6 0.00012 19.1 4.0 33 4-36 3-35 (73)
242 cd03015 PRX_Typ2cys Peroxiredo 79.0 3.6 7.9E-05 22.9 3.1 14 9-22 39-52 (173)
243 TIGR02661 MauD methylamine deh 78.7 6.4 0.00014 22.4 4.1 28 5-32 79-110 (189)
244 TIGR03759 conj_TIGR03759 integ 78.4 11 0.00025 22.2 5.1 32 4-35 112-143 (200)
245 PRK13947 shikimate kinase; Pro 78.3 5.3 0.00012 22.0 3.6 33 1-33 1-33 (171)
246 PRK03147 thiol-disulfide oxido 77.8 4.1 8.9E-05 22.4 3.1 15 5-19 66-80 (173)
247 PF06053 DUF929: Domain of unk 77.7 2.3 5.1E-05 25.8 2.1 22 4-25 62-83 (249)
248 TIGR01162 purE phosphoribosyla 77.4 8.9 0.00019 21.7 4.3 27 11-37 10-36 (156)
249 TIGR02739 TraF type-F conjugat 77.0 7.6 0.00016 23.7 4.2 34 4-37 154-191 (256)
250 PRK13703 conjugal pilus assemb 76.8 7.8 0.00017 23.5 4.2 33 4-36 147-183 (248)
251 TIGR00385 dsbE periplasmic pro 76.0 11 0.00024 21.0 4.5 18 6-23 69-86 (173)
252 PF04564 U-box: U-box domain; 74.7 4.4 9.6E-05 19.5 2.4 23 52-75 15-37 (73)
253 cd03014 PRX_Atyp2cys Peroxired 74.0 4.6 9.9E-05 21.6 2.5 48 10-58 37-89 (143)
254 PTZ00056 glutathione peroxidas 73.5 9.8 0.00021 22.0 3.9 12 7-18 46-57 (199)
255 PRK05568 flavodoxin; Provision 73.5 12 0.00026 20.0 4.6 35 1-35 1-39 (142)
256 TIGR02738 TrbB type-F conjugat 72.3 6.8 0.00015 21.8 3.0 32 4-35 54-89 (153)
257 cd00449 PLPDE_IV PyridoxaL 5'- 72.1 5.3 0.00012 23.6 2.7 55 18-73 193-252 (256)
258 PRK13015 3-dehydroquinate dehy 71.6 7.3 0.00016 21.8 2.9 36 12-47 79-114 (146)
259 PRK13949 shikimate kinase; Pro 71.4 10 0.00022 21.3 3.6 33 1-33 1-33 (169)
260 COG1102 Cmk Cytidylate kinase 71.1 7.7 0.00017 22.4 3.0 28 4-31 3-30 (179)
261 PRK00522 tpx lipid hydroperoxi 71.1 9 0.00019 21.4 3.3 48 10-58 55-107 (167)
262 TIGR01088 aroQ 3-dehydroquinat 71.0 7.7 0.00017 21.6 2.9 37 12-48 77-113 (141)
263 cd00466 DHQase_II Dehydroquina 70.8 8 0.00017 21.5 3.0 35 13-47 78-112 (140)
264 PF12728 HTH_17: Helix-turn-he 69.9 8.6 0.00019 16.8 3.1 25 51-75 25-49 (51)
265 PRK05395 3-dehydroquinate dehy 69.1 9.4 0.0002 21.4 3.0 36 12-47 79-114 (146)
266 PRK06092 4-amino-4-deoxychoris 68.8 9.1 0.0002 22.9 3.2 51 21-73 208-261 (268)
267 COG0757 AroQ 3-dehydroquinate 68.3 12 0.00026 20.9 3.3 37 11-47 77-113 (146)
268 PF13905 Thioredoxin_8: Thiore 68.1 13 0.00028 18.2 5.5 38 6-43 7-50 (95)
269 PRK08118 topology modulation p 67.8 12 0.00026 20.9 3.4 31 1-31 1-31 (167)
270 PF07511 DUF1525: Protein of u 67.7 7.7 0.00017 20.8 2.4 26 48-74 80-106 (114)
271 cd01557 BCAT_beta_family BCAT_ 67.2 5.4 0.00012 24.2 2.0 55 18-73 208-269 (279)
272 TIGR02681 phage_pRha phage reg 67.2 11 0.00024 19.8 3.0 21 54-74 4-24 (108)
273 PRK06606 branched-chain amino 66.3 9 0.0002 23.5 2.9 45 19-64 226-273 (306)
274 KOG0912 Thiol-disulfide isomer 66.2 5.1 0.00011 25.4 1.8 56 7-63 20-85 (375)
275 PRK13356 aminotransferase; Pro 65.5 11 0.00024 22.9 3.2 52 19-72 219-273 (286)
276 PRK06217 hypothetical protein; 64.1 16 0.00035 20.5 3.5 30 1-30 1-30 (183)
277 KOG0914 Thioredoxin-like prote 63.7 1.8 4E-05 26.0 -0.4 51 7-57 151-210 (265)
278 PF03227 GILT: Gamma interfero 63.7 6.9 0.00015 20.4 1.8 15 3-17 2-16 (108)
279 PF06764 DUF1223: Protein of u 63.4 11 0.00023 22.2 2.7 22 4-25 2-23 (202)
280 COG0526 TrxA Thiol-disulfide i 63.4 9.1 0.0002 18.5 2.2 18 8-25 40-57 (127)
281 TIGR03461 pabC_Proteo aminodeo 62.6 19 0.00041 21.5 3.7 54 19-73 204-259 (261)
282 cd03010 TlpA_like_DsbE TlpA-li 62.1 15 0.00033 19.0 3.0 20 5-24 30-49 (127)
283 TIGR01122 ilvE_I branched-chai 61.4 13 0.00028 22.8 2.9 45 19-64 218-265 (298)
284 KOG4277 Uncharacterized conser 61.0 5.8 0.00013 25.2 1.4 66 6-72 49-127 (468)
285 TIGR01626 ytfJ_HI0045 conserve 60.8 31 0.00066 20.0 5.6 23 7-29 66-91 (184)
286 PRK07650 4-amino-4-deoxychoris 60.7 18 0.00039 21.9 3.5 44 20-64 211-257 (283)
287 PF08285 DPM3: Dolichol-phosph 60.6 11 0.00024 19.3 2.1 24 5-28 59-90 (91)
288 PRK05569 flavodoxin; Provision 59.0 26 0.00057 18.6 4.6 35 1-35 1-39 (141)
289 COG0041 PurE Phosphoribosylcar 58.7 26 0.00056 20.0 3.5 26 11-36 14-39 (162)
290 TIGR03137 AhpC peroxiredoxin. 58.2 21 0.00045 20.3 3.3 9 10-18 42-50 (187)
291 COG3150 Predicted esterase [Ge 58.1 16 0.00034 21.3 2.7 31 4-34 3-33 (191)
292 PF12949 HeH: HeH/LEM domain; 57.6 9.4 0.0002 16.0 1.4 16 15-30 6-21 (35)
293 PF01220 DHquinase_II: Dehydro 57.5 12 0.00026 20.8 2.1 36 12-47 78-113 (140)
294 TIGR01121 D_amino_aminoT D-ami 56.9 19 0.00041 21.8 3.1 56 17-73 207-267 (276)
295 PRK07544 branched-chain amino 56.4 19 0.00041 22.0 3.0 44 19-63 223-269 (292)
296 PRK12400 D-amino acid aminotra 54.8 26 0.00057 21.4 3.5 55 18-73 215-274 (290)
297 TIGR01458 HAD-SF-IIA-hyp3 HAD- 54.3 43 0.00094 20.1 4.3 59 12-74 23-82 (257)
298 PF13344 Hydrolase_6: Haloacid 54.1 20 0.00043 18.4 2.5 58 13-74 17-75 (101)
299 PRK14528 adenylate kinase; Pro 54.1 30 0.00066 19.6 3.5 30 1-30 1-30 (186)
300 PRK07849 4-amino-4-deoxychoris 53.9 26 0.00056 21.5 3.4 48 18-66 224-274 (292)
301 COG2143 Thioredoxin-related pr 53.8 15 0.00033 21.1 2.2 16 4-19 46-61 (182)
302 PRK08105 flavodoxin; Provision 53.4 37 0.0008 18.7 4.2 34 1-34 1-38 (149)
303 cd02964 TryX_like_family Trypa 53.1 33 0.00072 18.0 5.4 17 6-22 23-39 (132)
304 PRK14368 Maf-like protein; Pro 52.9 41 0.0009 19.6 3.9 34 1-37 2-35 (193)
305 PRK14018 trifunctional thiored 52.9 13 0.00027 25.1 2.0 19 6-24 62-80 (521)
306 PF09633 DUF2023: Protein of u 52.8 34 0.00073 18.0 3.8 34 3-37 16-49 (101)
307 KOG3160 Gamma-interferon induc 51.8 12 0.00027 22.3 1.7 15 3-17 42-56 (220)
308 PF13911 AhpC-TSA_2: AhpC/TSA 51.5 21 0.00047 18.3 2.5 44 19-64 6-49 (115)
309 PF01063 Aminotran_4: Aminotra 51.4 17 0.00037 21.0 2.2 54 18-73 171-227 (231)
310 PLN00410 U5 snRNP protein, DIM 51.3 42 0.00091 18.6 5.5 50 6-56 29-82 (142)
311 TIGR03757 conj_TIGR03757 integ 51.0 19 0.0004 19.3 2.1 26 47-73 80-106 (113)
312 cd03016 PRX_1cys Peroxiredoxin 50.3 21 0.00045 20.6 2.4 13 7-19 33-45 (203)
313 PF07728 AAA_5: AAA domain (dy 49.6 39 0.00084 17.8 5.1 40 4-43 2-41 (139)
314 COG0703 AroK Shikimate kinase 49.4 34 0.00073 19.7 3.1 31 3-33 4-34 (172)
315 PF15608 PELOTA_1: PELOTA RNA 48.9 40 0.00086 17.7 4.1 25 8-32 62-86 (100)
316 PRK03731 aroL shikimate kinase 48.8 45 0.00098 18.3 3.6 30 3-32 4-33 (171)
317 cd01558 D-AAT_like D-Alanine a 48.6 26 0.00057 21.0 2.8 55 18-73 207-266 (270)
318 cd05295 MDH_like Malate dehydr 48.1 81 0.0018 21.1 5.0 65 10-74 2-82 (452)
319 PF00004 AAA: ATPase family as 47.3 40 0.00086 17.2 4.3 30 4-33 1-30 (132)
320 PF15379 DUF4606: Domain of un 47.2 17 0.00036 19.2 1.5 23 3-25 25-47 (104)
321 PRK10382 alkyl hydroperoxide r 46.8 29 0.00062 20.0 2.6 9 9-17 41-49 (187)
322 cd04336 YeaK YeaK is an unchar 46.7 48 0.001 18.0 3.8 22 16-37 2-23 (153)
323 TIGR03865 PQQ_CXXCW PQQ-depend 46.5 45 0.00097 18.6 3.3 26 3-28 118-143 (162)
324 PF13961 DUF4219: Domain of un 45.9 17 0.00036 14.1 1.2 18 10-27 5-22 (27)
325 PF03190 Thioredox_DsbH: Prote 45.8 57 0.0012 18.6 4.7 57 6-64 43-117 (163)
326 PRK10954 periplasmic protein d 45.4 58 0.0012 18.8 3.8 15 51-65 166-180 (207)
327 PF03711 OKR_DC_1_C: Orn/Lys/A 45.2 7.9 0.00017 21.3 0.2 45 28-74 64-110 (136)
328 PRK02496 adk adenylate kinase; 44.9 51 0.0011 18.4 3.5 30 1-30 1-30 (184)
329 PRK03839 putative kinase; Prov 44.8 50 0.0011 18.3 3.4 28 4-31 3-30 (180)
330 cd02978 KaiB_like KaiB-like fa 44.6 40 0.00087 16.5 4.6 52 4-57 4-60 (72)
331 PRK14531 adenylate kinase; Pro 44.4 55 0.0012 18.4 3.5 30 1-30 1-31 (183)
332 PF05663 DUF809: Protein of un 44.0 6.3 0.00014 20.6 -0.3 24 9-32 43-66 (138)
333 PHA03033 hypothetical protein; 43.7 41 0.0009 18.5 2.7 25 40-64 48-72 (142)
334 KOG0733 Nuclear AAA ATPase (VC 43.6 33 0.00073 24.2 2.9 31 4-34 226-256 (802)
335 COG2875 CobM Precorrin-4 methy 43.0 57 0.0012 20.0 3.5 30 4-33 79-110 (254)
336 PRK04182 cytidylate kinase; Pr 42.6 58 0.0013 17.8 3.5 28 4-31 3-30 (180)
337 PF14427 Pput2613-deam: Pput_2 41.7 41 0.00089 18.1 2.5 29 8-36 74-103 (118)
338 PTZ00137 2-Cys peroxiredoxin; 41.5 44 0.00096 20.5 3.0 14 4-17 101-116 (261)
339 PRK13599 putative peroxiredoxi 41.5 51 0.0011 19.4 3.2 13 6-18 33-47 (215)
340 cd05564 PTS_IIB_chitobiose_lic 41.3 41 0.00089 17.1 2.5 61 12-73 13-94 (96)
341 cd00755 YgdL_like Family of ac 41.1 54 0.0012 19.6 3.3 24 6-29 150-173 (231)
342 PRK06680 D-amino acid aminotra 41.0 45 0.00098 20.3 3.0 47 17-64 213-262 (286)
343 PF05496 RuvB_N: Holliday junc 41.0 83 0.0018 19.1 5.3 57 3-60 52-109 (233)
344 COG0716 FldA Flavodoxins [Ener 40.0 58 0.0013 17.8 3.1 28 1-28 1-29 (151)
345 PRK00625 shikimate kinase; Pro 39.7 72 0.0016 18.0 3.6 29 4-32 3-31 (173)
346 cd01559 ADCL_like ADCL_like: 4 39.5 44 0.00095 19.8 2.8 54 18-73 189-245 (249)
347 PRK08320 branched-chain amino 39.5 48 0.001 20.1 3.0 46 17-63 215-263 (288)
348 PRK09004 FMN-binding protein M 39.4 66 0.0014 17.6 3.3 33 1-33 1-37 (146)
349 cd05565 PTS_IIB_lactose PTS_II 38.9 59 0.0013 16.8 3.2 58 13-71 15-95 (99)
350 COG1225 Bcp Peroxiredoxin [Pos 38.9 56 0.0012 18.5 2.9 59 3-63 32-99 (157)
351 PF01514 YscJ_FliF: Secretory 38.7 65 0.0014 18.9 3.3 30 4-33 29-58 (206)
352 PF04705 TSNR_N: Thiostrepton- 38.7 16 0.00034 19.3 0.7 32 4-35 51-82 (115)
353 cd02969 PRX_like1 Peroxiredoxi 38.5 49 0.0011 18.2 2.7 13 6-18 31-43 (171)
354 PRK12479 branched-chain amino 37.7 70 0.0015 19.7 3.5 45 19-64 218-265 (299)
355 cd02968 SCO SCO (an acronym fo 37.5 48 0.001 17.4 2.5 17 6-22 28-45 (142)
356 TIGR00011 YbaK_EbsC ybaK/ebsC 37.1 51 0.0011 18.0 2.6 21 17-37 2-22 (152)
357 PF08410 DUF1737: Domain of un 36.8 49 0.0011 15.3 2.1 15 10-24 13-27 (54)
358 PF01522 Polysacc_deac_1: Poly 36.8 18 0.0004 18.5 0.8 26 4-29 97-122 (123)
359 PRK10222 PTS system L-ascorbat 36.6 60 0.0013 16.2 2.9 22 16-37 5-26 (85)
360 PRK03972 ribosomal biogenesis 35.9 75 0.0016 19.0 3.2 25 8-32 112-137 (208)
361 cd01445 TST_Repeats Thiosulfat 35.6 76 0.0017 17.1 3.2 25 4-28 98-124 (138)
362 PRK14532 adenylate kinase; Pro 35.6 83 0.0018 17.6 3.4 27 4-30 3-29 (188)
363 PF09314 DUF1972: Domain of un 35.1 31 0.00067 20.0 1.6 18 58-75 153-170 (185)
364 COG2256 MGS1 ATPase related to 35.0 1.4E+02 0.003 20.0 4.7 35 3-37 50-84 (436)
365 cd03013 PRX5_like Peroxiredoxi 35.0 46 0.001 18.3 2.2 58 4-61 32-100 (155)
366 COG2266 GTP:adenosylcobinamide 34.4 98 0.0021 18.0 5.0 34 4-37 64-97 (177)
367 PRK06703 flavodoxin; Provision 34.2 81 0.0018 17.0 4.5 35 1-35 1-39 (151)
368 COG5561 Predicted metal-bindin 33.9 68 0.0015 16.6 2.5 21 10-30 71-94 (101)
369 cd00002 YbaK_deacylase This CD 33.9 66 0.0014 17.6 2.7 20 17-36 3-22 (152)
370 PRK15116 sulfur acceptor prote 33.8 60 0.0013 20.0 2.7 23 6-28 169-192 (268)
371 PLN00020 ribulose bisphosphate 33.8 1E+02 0.0022 20.4 3.8 31 4-34 151-181 (413)
372 KOG2543 Origin recognition com 33.6 88 0.0019 20.8 3.5 31 4-34 33-63 (438)
373 PRK10670 hypothetical protein; 33.4 78 0.0017 17.7 3.0 21 17-37 3-23 (159)
374 PRK10444 UMP phosphatase; Prov 33.4 1E+02 0.0022 18.5 3.6 59 12-74 19-78 (248)
375 COG4803 Predicted membrane pro 33.4 54 0.0012 18.7 2.2 30 1-30 3-32 (170)
376 cd02020 CMPK Cytidine monophos 33.1 79 0.0017 16.5 3.4 29 4-32 2-30 (147)
377 smart00460 TGc Transglutaminas 32.8 56 0.0012 14.7 2.7 23 12-34 10-32 (68)
378 TIGR02173 cyt_kin_arch cytidyl 32.5 88 0.0019 16.9 3.5 27 4-30 3-29 (171)
379 PLN02412 probable glutathione 32.3 66 0.0014 17.9 2.6 12 7-18 36-47 (167)
380 TIGR02540 gpx7 putative glutat 32.3 63 0.0014 17.5 2.5 14 6-19 28-41 (153)
381 KOG0730 AAA+-type ATPase [Post 32.0 76 0.0017 22.4 3.1 30 3-32 470-499 (693)
382 TIGR00106 uncharacterized prot 31.4 64 0.0014 16.6 2.2 24 12-35 18-41 (97)
383 COG2897 SseA Rhodanese-related 31.4 75 0.0016 19.8 2.9 27 3-29 92-118 (285)
384 PF11734 TilS_C: TilS substrat 31.2 59 0.0013 15.6 2.0 13 51-63 38-50 (74)
385 COG4408 Uncharacterized protei 31.1 71 0.0015 20.9 2.7 24 10-33 179-202 (431)
386 PRK07308 flavodoxin; Validated 31.0 93 0.002 16.7 4.6 35 1-35 1-39 (146)
387 PF11711 Tim54: Inner membrane 30.9 1.1E+02 0.0025 20.0 3.7 35 3-37 69-112 (382)
388 PF14447 Prok-RING_4: Prokaryo 30.9 9.6 0.00021 17.7 -0.8 10 8-17 38-47 (55)
389 cd00464 SK Shikimate kinase (S 30.8 90 0.002 16.5 3.5 29 4-32 2-30 (154)
390 COG3531 Predicted protein-disu 30.8 1.1E+02 0.0023 18.4 3.3 31 4-34 4-38 (212)
391 KOG3131 Uncharacterized conser 30.7 36 0.00078 21.0 1.4 17 3-19 155-171 (281)
392 PRK00131 aroK shikimate kinase 30.5 96 0.0021 16.7 3.6 30 3-32 6-35 (175)
393 COG1202 Superfamily II helicas 30.5 42 0.0009 23.6 1.8 62 6-69 445-518 (830)
394 smart00504 Ubox Modified RING 30.1 56 0.0012 14.6 1.8 21 53-74 13-33 (63)
395 PF13743 Thioredoxin_5: Thiore 30.0 1.1E+02 0.0024 17.3 4.2 18 6-23 2-19 (176)
396 PF01910 DUF77: Domain of unkn 30.0 67 0.0015 16.3 2.2 22 12-33 16-37 (92)
397 TIGR00853 pts-lac PTS system, 30.0 76 0.0016 16.1 2.4 24 12-35 17-40 (95)
398 TIGR02544 III_secr_YscJ type I 29.7 82 0.0018 18.3 2.7 26 6-31 22-47 (193)
399 cd00340 GSH_Peroxidase Glutath 29.3 74 0.0016 17.2 2.4 16 7-23 29-44 (152)
400 cd04333 ProX_deacylase This CD 29.2 79 0.0017 17.1 2.5 21 16-36 2-22 (148)
401 PRK02551 flavoprotein NrdI; Pr 29.2 62 0.0014 18.2 2.1 23 1-23 1-23 (154)
402 PRK13190 putative peroxiredoxi 29.1 71 0.0015 18.5 2.4 16 7-22 35-50 (202)
403 PRK10310 PTS system galactitol 28.9 88 0.0019 15.8 3.1 23 15-37 20-42 (94)
404 KOG0335 ATP-dependent RNA heli 28.9 80 0.0017 21.4 2.8 44 14-58 349-393 (482)
405 COG5279 CYK3 Uncharacterized p 28.8 96 0.0021 21.2 3.1 27 7-33 208-234 (521)
406 TIGR00172 maf MAF protein. Thi 28.5 1.3E+02 0.0027 17.4 3.9 29 6-37 5-33 (183)
407 PTZ00256 glutathione peroxidas 28.4 87 0.0019 17.7 2.7 13 6-18 47-59 (183)
408 KOG3039 Uncharacterized conser 28.4 48 0.001 20.5 1.7 25 46-73 50-74 (303)
409 PF00763 THF_DHG_CYH: Tetrahyd 28.3 1E+02 0.0022 16.3 3.9 31 14-44 46-76 (117)
410 TIGR01123 ilvE_II branched-cha 28.0 83 0.0018 19.4 2.7 44 18-62 224-276 (313)
411 PRK13600 putative ribosomal pr 27.9 91 0.002 15.7 2.4 34 10-48 38-72 (84)
412 PF03102 NeuB: NeuB family; I 27.8 98 0.0021 18.7 2.9 59 12-73 75-135 (241)
413 cd04335 PrdX_deacylase This CD 27.7 1.1E+02 0.0025 16.7 3.5 21 16-36 2-22 (156)
414 cd02958 UAS UAS family; UAS is 27.3 98 0.0021 15.8 5.6 51 6-57 23-81 (114)
415 cd01520 RHOD_YbbB Member of th 27.1 1.1E+02 0.0023 16.1 3.9 25 4-28 89-113 (128)
416 PF05728 UPF0227: Uncharacteri 27.0 62 0.0014 18.6 1.9 33 4-36 3-38 (187)
417 PRK00279 adk adenylate kinase; 26.9 1.3E+02 0.0029 17.3 3.5 27 4-30 3-29 (215)
418 PF11789 zf-Nse: Zinc-finger o 26.7 74 0.0016 14.6 1.8 22 52-73 22-43 (57)
419 PLN02845 Branched-chain-amino- 26.7 1E+02 0.0023 19.4 3.0 38 26-64 261-303 (336)
420 PLN02782 Branched-chain amino 26.4 1.1E+02 0.0023 20.1 3.0 45 18-63 317-366 (403)
421 PRK15000 peroxidase; Provision 26.4 1.3E+02 0.0029 17.4 3.2 16 4-19 37-54 (200)
422 COG1651 DsbG Protein-disulfide 26.4 99 0.0021 18.1 2.8 21 4-24 88-108 (244)
423 PLN02948 phosphoribosylaminoim 26.2 1.9E+02 0.0041 19.9 4.3 27 11-37 422-448 (577)
424 PF04641 Rtf2: Rtf2 RING-finge 26.1 83 0.0018 19.1 2.4 26 47-74 42-67 (260)
425 PRK09590 celB cellobiose phosp 25.7 91 0.002 16.3 2.2 24 12-35 15-38 (104)
426 TIGR02463 MPGP_rel mannosyl-3- 25.7 1.4E+02 0.003 17.1 4.0 52 13-65 19-70 (221)
427 KOG1467 Translation initiation 25.4 2.3E+02 0.0049 19.6 4.3 33 5-37 362-394 (556)
428 KOG1335 Dihydrolipoamide dehyd 25.3 1.6E+02 0.0034 19.9 3.6 54 4-58 388-441 (506)
429 PRK09864 putative peptidase; P 25.1 2E+02 0.0043 18.6 4.8 42 14-57 266-307 (356)
430 PTZ00088 adenylate kinase 1; P 25.1 1.6E+02 0.0034 17.6 3.4 29 3-31 8-36 (229)
431 PRK00032 Maf-like protein; Rev 25.0 1.5E+02 0.0033 17.2 3.8 29 6-37 4-32 (190)
432 PF08973 TM1506: Domain of unk 25.0 1.1E+02 0.0023 16.9 2.5 19 15-33 77-95 (134)
433 PRK05647 purN phosphoribosylgl 24.9 1.5E+02 0.0033 17.2 6.3 33 1-33 1-33 (200)
434 PRK03767 NAD(P)H:quinone oxido 24.7 1.5E+02 0.0032 17.0 4.5 35 1-35 1-40 (200)
435 PF09019 EcoRII-C: EcoRII C te 24.6 25 0.00054 20.1 0.0 28 16-43 44-71 (164)
436 PRK00234 Maf-like protein; Rev 24.4 1.6E+02 0.0034 17.2 3.5 29 6-37 4-32 (192)
437 PRK13946 shikimate kinase; Pro 24.3 1.4E+02 0.0031 16.7 3.4 31 3-33 12-42 (184)
438 PRK14530 adenylate kinase; Pro 24.2 1.5E+02 0.0033 17.0 3.5 28 3-30 5-32 (215)
439 COG3453 Uncharacterized protei 23.8 1.4E+02 0.0031 16.4 3.8 47 10-57 42-92 (130)
440 PRK13189 peroxiredoxin; Provis 23.7 1.5E+02 0.0034 17.5 3.2 10 8-17 44-53 (222)
441 PRK04425 Maf-like protein; Rev 23.5 1.7E+02 0.0036 17.2 3.8 31 4-37 5-35 (196)
442 PRK13337 putative lipid kinase 23.5 1.9E+02 0.0041 17.8 5.9 44 1-44 1-50 (304)
443 PRK14367 Maf-like protein; Pro 23.4 1.7E+02 0.0037 17.2 3.7 29 6-37 4-32 (202)
444 CHL00195 ycf46 Ycf46; Provisio 23.3 2.3E+02 0.0049 19.2 4.1 31 4-34 262-292 (489)
445 PF03975 CheD: CheD chemotacti 23.3 1.3E+02 0.0028 15.8 3.2 23 14-36 65-87 (114)
446 PF10865 DUF2703: Domain of un 23.0 1.4E+02 0.0031 16.1 4.7 42 17-63 31-72 (120)
447 KOG2960 Protein involved in th 22.8 51 0.0011 20.2 1.0 16 17-32 132-147 (328)
448 KOG0733 Nuclear AAA ATPase (VC 22.8 1.7E+02 0.0036 21.1 3.5 29 4-32 548-576 (802)
449 PRK00080 ruvB Holliday junctio 22.6 2E+02 0.0044 17.8 5.6 32 3-34 53-84 (328)
450 KOG0191 Thioredoxin/protein di 22.5 2.2E+02 0.0048 18.2 5.3 51 4-57 51-106 (383)
451 PRK03600 nrdI ribonucleotide r 22.4 1.5E+02 0.0032 16.2 4.0 19 4-22 3-21 (134)
452 KOG0908 Thioredoxin-like prote 22.3 72 0.0016 19.9 1.6 52 7-62 28-86 (288)
453 CHL00206 ycf2 Ycf2; Provisiona 22.1 1.8E+02 0.0039 23.9 3.8 30 4-33 1633-1662(2281)
454 PF03215 Rad17: Rad17 cell cyc 21.8 2E+02 0.0044 19.6 3.7 28 4-31 48-75 (519)
455 PF15616 TerY-C: TerY-C metal 21.8 27 0.00059 19.2 -0.2 13 6-18 74-86 (131)
456 PF04273 DUF442: Putative phos 21.7 1.4E+02 0.003 15.7 2.5 45 12-58 43-92 (110)
457 TIGR00070 hisG ATP phosphoribo 21.7 1.5E+02 0.0032 17.2 2.8 22 14-35 116-137 (182)
458 TIGR00635 ruvB Holliday juncti 21.7 2E+02 0.0044 17.4 5.5 31 4-34 33-63 (305)
459 TIGR03563 perox_SACOL1771 pero 21.6 1.5E+02 0.0032 15.9 3.1 24 14-37 55-78 (138)
460 PLN02723 3-mercaptopyruvate su 21.6 1.7E+02 0.0036 18.3 3.2 26 3-28 105-130 (320)
461 PRK07116 flavodoxin; Provision 21.5 1.6E+02 0.0035 16.2 3.2 28 1-28 2-30 (160)
462 PHA03045 IMV membrane protein; 21.4 91 0.002 16.8 1.7 26 5-30 49-74 (113)
463 PRK08154 anaerobic benzoate ca 21.2 2E+02 0.0043 17.9 3.4 29 3-31 135-163 (309)
464 PTZ00253 tryparedoxin peroxida 21.0 1.3E+02 0.0028 17.2 2.5 9 10-18 47-55 (199)
465 cd04890 ACT_AK-like_1 ACT doma 20.8 1E+02 0.0022 13.7 2.8 22 12-33 14-35 (62)
466 PF14437 MafB19-deam: MafB19-l 20.8 1.8E+02 0.0038 16.4 3.3 28 4-31 102-131 (146)
467 PRK02478 Maf-like protein; Rev 20.7 2E+02 0.0042 16.9 3.8 29 6-37 5-33 (199)
468 TIGR00390 hslU ATP-dependent p 20.6 2.8E+02 0.0061 18.7 4.3 32 3-34 49-80 (441)
469 TIGR03439 methyl_EasF probable 20.6 1.5E+02 0.0032 18.8 2.8 27 11-37 84-113 (319)
470 PRK12702 mannosyl-3-phosphogly 20.3 2.5E+02 0.0053 17.9 4.4 52 12-65 20-71 (302)
471 COG2371 UreE Urease accessory 20.3 1.4E+02 0.003 17.0 2.4 26 13-38 114-139 (155)
No 1
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.94 E-value=4.4e-26 Score=112.03 Aligned_cols=71 Identities=35% Similarity=0.470 Sum_probs=67.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||+.+.||+|++++++|+++|++|+.+.++..+..++|++.+|. |++|+++++|..++||.+|++||++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 71 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDE 71 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHh
Confidence 5899999999999999999999999999999987778899999999 7999999999999999999999975
No 2
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.94 E-value=6.5e-26 Score=111.94 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=64.8
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
++||+++.||+|++++++|+++|++|+.+.++.. ...++|.++||. |+||+|++||..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998874 356789999999 799999999999999999999996
No 3
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.93 E-value=1.1e-25 Score=111.50 Aligned_cols=69 Identities=42% Similarity=0.630 Sum_probs=66.0
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
||++..||+|+|+|++|+++||+|+.+.++..+..+++.+.+|. |++|+|++||..++||.+|++||++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHH
Confidence 79999999999999999999999999999988888999999999 7999999999999999999999974
No 4
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.93 E-value=1.3e-25 Score=110.63 Aligned_cols=71 Identities=35% Similarity=0.428 Sum_probs=65.7
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||+++.||+|++++++|+++|++|+.+.++.. +..++|.+.||. |++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999864 256899999999 7999999999999999999999986
No 5
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.93 E-value=7.3e-26 Score=112.65 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=64.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEe--CCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVH--GGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~--~~~~l~es~~I~~yl~~ 75 (75)
++||+++.||+|++++++|+++|++|+.++++... ..+++++.||. |++|+|++ +|..++||.+|++||++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 79999999999999999999999999999887543 46789999999 79999986 46899999999999985
No 6
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.93 E-value=3.7e-25 Score=108.52 Aligned_cols=68 Identities=32% Similarity=0.462 Sum_probs=64.0
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEe-CCEEeecHHHHHHhH
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVH-GGRPVAESMVILEYI 73 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~~~~l~es~~I~~yl 73 (75)
+||+++.||+|++++++|+++|++|+.+.++..+..++|.+.||. |+||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999987777899999999 79999997 489999999999997
No 7
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.93 E-value=5.1e-25 Score=108.71 Aligned_cols=72 Identities=64% Similarity=1.084 Sum_probs=65.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||+++.||+|++++++|+++|++|+.+.++...+.++|.+.||..|++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~ 72 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDE 72 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHh
Confidence 589999999999999999999999999999888777788999999316999999999999999999999985
No 8
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.92 E-value=8.1e-25 Score=107.93 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=65.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+++||+++.|++|+++|++|+++|++|+.+.++.++..+++.+.||. |++|+|+++|..++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 37999999999999999999999999999999875555678899999 7999999999999999999999975
No 9
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.92 E-value=7.4e-25 Score=125.84 Aligned_cols=72 Identities=32% Similarity=0.434 Sum_probs=68.4
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+++||+++.||+|++++++|+++|++|+.+.++..+..++|+++||. |+||+|++||..|+||.||++||++
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~ 81 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDE 81 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHH
Confidence 48999999999999999999999999999999987778899999999 7999999999999999999999974
No 10
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.92 E-value=1.4e-24 Score=106.35 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=61.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeC-CEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHG-GRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-~~~l~es~~I~~yl~~ 75 (75)
++||+++.||+|+++|++|+++|++|+.+.++... .....+.+|. +++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 47999999999999999999999999999887543 2344677898 799999975 8999999999999986
No 11
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.92 E-value=2.4e-24 Score=109.79 Aligned_cols=71 Identities=28% Similarity=0.496 Sum_probs=65.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeC-CEEeecHHHHHHhHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHG-GRPVAESMVILEYIE 74 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-~~~l~es~~I~~yl~ 74 (75)
.++||+++.||+|++++++|+++|++|+.+.++..+..++|.+.||. +++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 58999999999999999999999999999999877666779999999 799999976 899999999999996
No 12
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.92 E-value=1.8e-24 Score=110.39 Aligned_cols=65 Identities=34% Similarity=0.509 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
..||||+++|++|+++|++|+.+.++..+..++|+++||. |++|+|+++|.+++||.+|++||++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHH
Confidence 4699999999999999999999999998888999999999 7999999999999999999999985
No 13
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.92 E-value=2.9e-24 Score=105.39 Aligned_cols=70 Identities=46% Similarity=0.673 Sum_probs=64.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
++||+++.||+|++++++|+++|++|+.+.++.. +..++|.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 356889999999 799999999999999999999985
No 14
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.92 E-value=4.3e-24 Score=105.71 Aligned_cols=71 Identities=39% Similarity=0.550 Sum_probs=65.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||+++.||+|+++|++|+++|++|+.+.++.. +..++|.+.||. |++|+|+++|..++||.||++||++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhh
Confidence 7899999999999999999999999999988865 346789999999 7999999999999999999999985
No 15
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.91 E-value=3.9e-24 Score=105.03 Aligned_cols=70 Identities=33% Similarity=0.442 Sum_probs=63.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~ 74 (75)
++||+++.||+|+++|++|+++|++|+.+.++.. ...+++.+.+|. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998864 346789999999 7999998 57889999999999996
No 16
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.91 E-value=6.1e-24 Score=104.56 Aligned_cols=70 Identities=36% Similarity=0.480 Sum_probs=64.8
Q ss_pred eEEEeeCCChhHHHHHHHHHh--cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKL--KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~ 74 (75)
++||+++.||+|+++|++|++ +|++|+.+.++.....++|++.+|. |++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778899999999 7999998 57899999999999996
No 17
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.91 E-value=5.1e-24 Score=104.63 Aligned_cols=71 Identities=28% Similarity=0.267 Sum_probs=64.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||+++.|++|+++|++|+++|++|+.+.++..+ ...+|.+.||. |++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988653 33458899999 7999999999999999999999975
No 18
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.91 E-value=8.3e-24 Score=104.71 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=64.7
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceEEEEecCC--CCcHHHhhhCCCCCcccEEEe-CCEEeecHHHHHHhHhC
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH--NKSELLLQLNPVHKQVPVLVH-GGRPVAESMVILEYIEE 75 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~-~~~~l~es~~I~~yl~~ 75 (75)
+||+++.||+|++++++|+++|++|+.+.++.. +..++|++.||. |++|+|++ ||..++||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 467889999999 79999996 58999999999999975
No 19
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.91 E-value=2.4e-23 Score=103.16 Aligned_cols=71 Identities=28% Similarity=0.423 Sum_probs=64.8
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC---CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN---KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||+++.|++|++++++|+++|++|+.+.++..+ ..+++.+.||. |++|+|+++|..++||.||++||++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~ 74 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLAR 74 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHh
Confidence 47999999999999999999999999999988653 45789999999 7999999999999999999999975
No 20
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.90 E-value=1.2e-23 Score=104.38 Aligned_cols=70 Identities=29% Similarity=0.473 Sum_probs=60.5
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeC----CEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHG----GRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~----~~~l~es~~I~~yl~~ 75 (75)
+++||+++.||+|+++|.+|+++|++|+.++++... ..++ +.+|. +++|+|+++ |.+++||.+|++||++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~~~-~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~ 74 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RKEI-KWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKT 74 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HHHH-HHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHH
Confidence 589999999999999999999999999999887543 2333 56898 799999954 7899999999999985
No 21
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.90 E-value=2.9e-23 Score=101.86 Aligned_cols=70 Identities=43% Similarity=0.638 Sum_probs=64.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
++||++..|++|+++|++|+++|++|+.+.++.. ...++|++.+|. |++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999864 356889999999 799999999999999999999996
No 22
>PRK15113 glutathione S-transferase; Provisional
Probab=99.90 E-value=2.2e-23 Score=119.98 Aligned_cols=72 Identities=26% Similarity=0.379 Sum_probs=66.2
Q ss_pred ceEEEeeC--CChhHHHHHHHHHhcCCceEEEEecCCC---CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTW--PSSFCYRVIWALKLKGVEYEYVEVNIHN---KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~--~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+++||+.+ .||+|++++++|+++|++|+.+.++..+ ..++|+++||. |+||+|++||..|+||.||++||++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYLEE 81 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHHHH
Confidence 68999976 6999999999999999999999998753 56899999999 7999999999999999999999974
No 23
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.90 E-value=3.6e-23 Score=101.90 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=64.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
++||+++.||++++++++|+++|++|+.+.++.. ...++|.+.||. |++|+|+++|..++||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 4799999999999999999999999999988753 346889999999 799999999999999999999985
No 24
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.90 E-value=8.1e-23 Score=102.33 Aligned_cols=70 Identities=30% Similarity=0.409 Sum_probs=63.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeC---CEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHG---GRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~---~~~l~es~~I~~yl~~ 75 (75)
++||+++. |+|++++++|+++|++|+.+.++.. ...++|.+.||. |++|+|+++ |..|+||.+|++||++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHH
Confidence 79999986 9999999999999999999999864 456889999999 799999976 7999999999999974
No 25
>PLN02473 glutathione S-transferase
Probab=99.89 E-value=9.5e-23 Score=117.00 Aligned_cols=73 Identities=30% Similarity=0.424 Sum_probs=67.2
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
|. ++||+++.||++++++++|+++|++|+.+.++.. +..++++++||. |+||+|++||..|+||.||++||++
T Consensus 1 ~~-~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~ 76 (214)
T PLN02473 1 MV-VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYAT 76 (214)
T ss_pred Cc-eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHH
Confidence 54 8999999999999999999999999999988875 467889999999 7999999999999999999999974
No 26
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.89 E-value=3.2e-22 Score=96.50 Aligned_cols=70 Identities=43% Similarity=0.579 Sum_probs=63.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCc-HHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKS-ELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
++||+++.||+|++++++|+++|++|+.+.++..... .++.+.+|. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999876433 358889999 799999999999999999999985
No 27
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.7e-22 Score=116.08 Aligned_cols=73 Identities=63% Similarity=1.031 Sum_probs=68.6
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
.++||++..|||++|++++|+.|||+|+.++++..++.+++++.||-.++||+|+++|..++||..|++||+|
T Consensus 9 ~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 9 TVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred eEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 3899999999999999999999999999999999888999999995448999999999999999999999986
No 28
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.88 E-value=6e-22 Score=97.87 Aligned_cols=70 Identities=33% Similarity=0.535 Sum_probs=63.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||+++. +++++++++|+++|++|+.+.++.. ...++|.+.+|. +++|+|+++|..++||.+|++||++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~ 73 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAE 73 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHH
Confidence 47998875 6899999999999999999998864 467889999999 7999999999999999999999974
No 29
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.88 E-value=6.6e-22 Score=98.14 Aligned_cols=70 Identities=33% Similarity=0.460 Sum_probs=62.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC---CcHHHhhhCCCCCcccEEEeC-CEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN---KSELLLQLNPVHKQVPVLVHG-GRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~-~~~l~es~~I~~yl~~ 75 (75)
++||+++.| .+++++++|+++|++|+.+.++..+ ..++|++.||. |++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~ 74 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLAD 74 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHH
Confidence 479999876 5899999999999999999888753 47899999999 799999976 8999999999999974
No 30
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.88 E-value=1.1e-21 Score=97.46 Aligned_cols=70 Identities=37% Similarity=0.468 Sum_probs=59.2
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC---CcHHHhhhCCC-CCcccEEEeC-CEEeecHHHHHHhHhC
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN---KSELLLQLNPV-HKQVPVLVHG-GRPVAESMVILEYIEE 75 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~-~~~vP~l~~~-~~~l~es~~I~~yl~~ 75 (75)
+|++++..++++++|++|+++|++|+.+.++... +.++|.+.+|. + ++|+|+++ |..++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g-~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFG-KVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSS-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccc-eeeEEEECCCCEEEcHHHHHHHhCC
Confidence 4555555669999999999999999999999753 34999999998 6 99999998 9999999999999985
No 31
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.88 E-value=4.1e-22 Score=97.60 Aligned_cols=64 Identities=47% Similarity=0.638 Sum_probs=55.4
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCC----CCcHHHhhhCCCCCcccEEEe-CCEEeecHHHHHHhHhC
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIH----NKSELLLQLNPVHKQVPVLVH-GGRPVAESMVILEYIEE 75 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~~-~~~~l~es~~I~~yl~~ 75 (75)
.||||+|++++|+++|++|+...+... ...++|.+.||. |+||+|++ +|.+++||.+|++||++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 599999999999999999999888442 345889999999 79999996 78999999999999984
No 32
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.87 E-value=9.1e-22 Score=98.96 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=60.3
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC----CcHHHhh-h----CCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN----KSELLLQ-L----NPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~----~~~~~~~-~----~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+||+++.++.|++++++|+++|++|+.+.++... ..+++.+ . .|. |+||+|++||..++||.||++||++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHhh
Confidence 7999999999999999999999999999998753 1245542 2 288 7999999999999999999999975
No 33
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-22 Score=113.15 Aligned_cols=72 Identities=42% Similarity=0.715 Sum_probs=66.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC----CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN----KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+..||+++.|..++|||++|+.+||+|+.+.|++-. ...+|.++||. ++||+|++||.++.||.||++||+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHh
Confidence 789999999999999999999999999999999752 45689999999 7999999999999999999999986
No 34
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.87 E-value=1.7e-21 Score=97.31 Aligned_cols=69 Identities=26% Similarity=0.290 Sum_probs=59.0
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhC-----CCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLN-----PVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+++||+++.++.|++++++|+++|++|+.+.++.. ++|.+.+ |. |++|+|++||..++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHH
Confidence 47899999999999999999999999999988752 3333333 47 7999999999999999999999974
No 35
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8e-22 Score=113.10 Aligned_cols=71 Identities=41% Similarity=0.597 Sum_probs=65.8
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC--CCcHHHhhhCCCCCcccEEEeCCE-EeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH--NKSELLLQLNPVHKQVPVLVHGGR-PVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~~~~-~l~es~~I~~yl~~ 75 (75)
++||+.+.||+|.++++++.++|++|+.+.++.. ...++|++.||. |+||+|+++|. .|+||.||++||++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~ 74 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAE 74 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHh
Confidence 5899999999999999999999999999999987 478999999999 79999997765 89999999999985
No 36
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.86 E-value=2.5e-21 Score=95.80 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=57.8
Q ss_pred eEEEeeC-------CChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTW-------PSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~-------~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++||++. .||+|.+++++|+++|++|+.+.++. .+.+|. |++|+|+++|..++||.+|++||++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHH
Confidence 6899998 68999999999999999999887764 267899 7999999999999999999999975
No 37
>PLN02395 glutathione S-transferase
Probab=99.86 E-value=3.3e-21 Score=110.64 Aligned_cols=72 Identities=36% Similarity=0.478 Sum_probs=64.5
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
|+ +|||+...| +++|++++|+++|++|+.+.++.. ...++|++.||. |+||+|+++|..|+||.+|++||++
T Consensus 1 ~~-~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 1 MV-LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred Ce-EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHH
Confidence 66 899997654 689999999999999999999875 457899999999 7999999999999999999999974
No 38
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.86 E-value=3.2e-21 Score=110.92 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=61.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC---CcHHHhhhCCCCCcccEEEe-----CC--EEeecHHHHHHhH
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN---KSELLLQLNPVHKQVPVLVH-----GG--RPVAESMVILEYI 73 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~-----~~--~~l~es~~I~~yl 73 (75)
+|||+.+ +|+|++++++|+++|++|+.+.++... ..++|+++||. |+||+|++ || .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999876 799999999999999999999998753 46899999999 79999996 44 4799999999999
Q ss_pred hC
Q 038935 74 EE 75 (75)
Q Consensus 74 ~~ 75 (75)
++
T Consensus 80 ~~ 81 (215)
T PRK13972 80 AE 81 (215)
T ss_pred HH
Confidence 74
No 39
>PLN02378 glutathione S-transferase DHAR1
Probab=99.86 E-value=1.9e-21 Score=111.95 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=61.8
Q ss_pred eCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 9 TWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 9 ~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+..||+|++++++|+++|++|+.+.++..+..++|+++||. |+||+|++||..|+||.+|++||++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEE 82 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHH
Confidence 45699999999999999999999999988888899999999 7999999999999999999999974
No 40
>PRK10387 glutaredoxin 2; Provisional
Probab=99.86 E-value=2.7e-21 Score=110.61 Aligned_cols=70 Identities=27% Similarity=0.420 Sum_probs=60.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~~ 75 (75)
++||+++.||+|++++++|+++|++|+.+.++...... ..+.+|. |+||+|+ +||..++||.+|++||++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCC-cccceEEecCCeEecCHHHHHHHHHH
Confidence 58999999999999999999999999998886543222 2578888 7999995 889999999999999975
No 41
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.86 E-value=3.9e-21 Score=96.83 Aligned_cols=64 Identities=34% Similarity=0.474 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEecCCCC---cHHHhhhCCCCCcccEEEeC-CEEeecHHHHHHhHhC
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVEVNIHNK---SELLLQLNPVHKQVPVLVHG-GRPVAESMVILEYIEE 75 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~~~-~~~l~es~~I~~yl~~ 75 (75)
+.||+|+++|++|+++|++|+.+.++..+. ..++ +.+|. |++|+|+++ |..++||.+|++||++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 579999999999999999999998886532 2344 78999 799999988 8999999999999985
No 42
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.85 E-value=1.9e-20 Score=92.26 Aligned_cols=65 Identities=34% Similarity=0.503 Sum_probs=59.2
Q ss_pred eCCChhHHHHHHHHHhcCCceEEEEecCCC--CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 9 TWPSSFCYRVIWALKLKGVEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 9 ~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
...||+|++++++|+++|++|+.+.++... ..++|.+.+|. |++|+|+++|..++||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 457999999999999999999999998753 46889999999 799999999999999999999985
No 43
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.85 E-value=4.6e-21 Score=109.24 Aligned_cols=71 Identities=35% Similarity=0.526 Sum_probs=64.7
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~~ 75 (75)
++||++..||++++++++|+++|++|+.+.++.....+++.+.||. |+||+|+ ++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~ 72 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIEL 72 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHH
Confidence 4899999999999999999999999999988876666778889999 7999998 678999999999999974
No 44
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.85 E-value=6.7e-21 Score=111.33 Aligned_cols=65 Identities=29% Similarity=0.383 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
..||+|++++++|.++|++|+.+.++..+..++|+++||. |+||+|+++|.+|+||.+|++||++
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHH
Confidence 5799999999999999999999999998888999999999 7999999999999999999999984
No 45
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.84 E-value=4.5e-20 Score=90.56 Aligned_cols=63 Identities=29% Similarity=0.404 Sum_probs=56.4
Q ss_pred EEEeeC-------CChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 5 KLLGTW-------PSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 5 ~ly~~~-------~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+||.+. .||+|++++++|+++|++|+.+.++... .+|. |++|+|+++|..++||.+|++||++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhh
Confidence 577776 8999999999999999999999887532 7888 7999999999999999999999975
No 46
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.83 E-value=1.9e-20 Score=107.08 Aligned_cols=70 Identities=49% Similarity=0.772 Sum_probs=63.3
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceEEEEecCC----CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH----NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+||++..||+++++|++|+++|++|+.+.++.. ...+++++.||. |++|+|++||..|+||.+|++||++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~ 74 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEE 74 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHH
Confidence 489889999999999999999999999988852 246789999999 7999999999999999999999974
No 47
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.83 E-value=3e-20 Score=106.79 Aligned_cols=69 Identities=29% Similarity=0.406 Sum_probs=60.1
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHhC
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIEE 75 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~~ 75 (75)
+||++..||+|+++|++|+++|++|+.+++..... ....+.||. |++|+|+ +||..++||.+|++||++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHH
Confidence 58999999999999999999999999887755432 234788999 7999998 889999999999999984
No 48
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.83 E-value=5.6e-20 Score=105.31 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=61.8
Q ss_pred Cc-ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHh--------hhCCCCCcccEEEeCCEEeecHHHHHH
Q 038935 1 ME-EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLL--------QLNPVHKQVPVLVHGGRPVAESMVILE 71 (75)
Q Consensus 1 M~-~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~l~~~~~~l~es~~I~~ 71 (75)
|+ +++||+++.+++++++|++|+++|++|+.+.++. .. +++. +.||+ |+||+|++||..|+||.||++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 55 6899999999999999999999999999987753 22 2332 47999 799999999999999999999
Q ss_pred hHhC
Q 038935 72 YIEE 75 (75)
Q Consensus 72 yl~~ 75 (75)
||++
T Consensus 78 YLa~ 81 (205)
T PTZ00057 78 YLSK 81 (205)
T ss_pred HHHH
Confidence 9974
No 49
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.82 E-value=4.4e-20 Score=109.44 Aligned_cols=66 Identities=35% Similarity=0.516 Sum_probs=61.7
Q ss_pred eCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 9 TWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 9 ~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
...||+|++++++|+++|++|+.+.++..++.++|+++||. |+||+|+++|..|+||.+|++||++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e 135 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEE 135 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHH
Confidence 44699999999999999999999999988888999999999 7999999999999999999999974
No 50
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.82 E-value=5.3e-20 Score=104.68 Aligned_cols=70 Identities=24% Similarity=0.463 Sum_probs=61.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC----CcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN----KSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~~ 75 (75)
++||+...+ ++.+++++|+++|++|+.+.++... ..++|+++||. |+||+|+ +||..|+||.+|++||++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~ 75 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLAD 75 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHH
Confidence 479998755 7999999999999999999998752 34789999999 7999998 578999999999999974
No 51
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.82 E-value=1.7e-19 Score=90.12 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=64.3
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+++||+.++||+|.+++.+|+.+|++|+.++++.+....++.+.++. .++|++..||..+.++.+|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 58999999999999999999999999999999876555667777777 699999999999999999999985
No 52
>PRK11752 putative S-transferase; Provisional
Probab=99.81 E-value=1.4e-19 Score=107.20 Aligned_cols=71 Identities=27% Similarity=0.321 Sum_probs=62.3
Q ss_pred ceEEEeeCCChhHHHHHHHHHhc------CCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeC----CEEeecHHHH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLK------GVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHG----GRPVAESMVI 69 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~----~~~l~es~~I 69 (75)
+++||+.+ ||+|++|+++|+++ |++|+.+.++.. +..++|+++||. |+||+|+++ |..|+||.||
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 58999975 99999999999997 899999988875 356899999999 799999974 3689999999
Q ss_pred HHhHhC
Q 038935 70 LEYIEE 75 (75)
Q Consensus 70 ~~yl~~ 75 (75)
++||++
T Consensus 122 l~YL~~ 127 (264)
T PRK11752 122 LLYLAE 127 (264)
T ss_pred HHHHHH
Confidence 999974
No 53
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-19 Score=104.54 Aligned_cols=72 Identities=39% Similarity=0.518 Sum_probs=67.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+++||+...++.|+++.++++++|++|+.+.++.. +..++|+++||. |+||+|+++|..++||.||+.||.+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAE 76 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHH
Confidence 38999999999999999999999999999977765 578999999999 7999999999999999999999974
No 54
>PRK10638 glutaredoxin 3; Provisional
Probab=99.80 E-value=6.4e-19 Score=88.67 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=65.4
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
|+++++|+.++||+|++++.+|+++|++|+.++++... ...++.+.++. +++|++..||..+.+...+.++-+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 78899999999999999999999999999999998764 45678888998 699999999999999998887643
No 55
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.79 E-value=1.5e-18 Score=85.21 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=63.0
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+++||+.++||+|.+++.+|+.+|++|+.++++......++.+..+. .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999999866545556666777 589999999999999999999985
No 56
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.8e-18 Score=98.44 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=67.2
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
|+.++|++++..++++.+|++|+..|++|+++.+...+...++....|+ |++|+|..||..|.+|.||++||++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLAr 74 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLAR 74 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHH
Confidence 7789999999999999999999999999999999987655555656899 7999999999999999999999984
No 57
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.70 E-value=2.3e-16 Score=77.54 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=60.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILE 71 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~ 71 (75)
+++||+.++||+|++++.+|+++|++|+.++++... ..+++.+.++. +++|++..+|..+.+-.+..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 589999999999999999999999999999998653 46678888888 699999999999998887765
No 58
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.67 E-value=7e-16 Score=77.40 Aligned_cols=62 Identities=16% Similarity=0.314 Sum_probs=50.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeec
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAE 65 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 65 (75)
++++|+.++||+|.+++.+|+++||+|++++++.+....+..+..+. .++|+++.+|..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEec
Confidence 48999999999999999999999999999999865433343444677 699999988876643
No 59
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.66 E-value=1.3e-15 Score=74.90 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=59.3
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC-CCcHHHhhhCCCCC-cccEEEeCCEEeecHHHHHHhHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH-NKSELLLQLNPVHK-QVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~-~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+++||+.++||+|.+++.+|+.+|++|++++++.. +...++.+..+. . ++|++..+|..+.+...+.++-+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHHh
Confidence 48999999999999999999999999999999865 233445555544 4 89999999999999999988754
No 60
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.66 E-value=1e-15 Score=75.52 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=48.6
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+.+++|.+++++|++.|+||+.+.... .+ ..+|. |+||+|++||.+++||.+|+.||++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~----~~--~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~ 73 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN----AE--FMSPS-GKVPFIRVGNQIVSEFGPIVQFVEA 73 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC----cc--ccCCC-CcccEEEECCEEEeCHHHHHHHHhc
Confidence 457889999999999999999874321 11 15667 7999999999999999999999974
No 61
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.5e-15 Score=76.08 Aligned_cols=68 Identities=22% Similarity=0.370 Sum_probs=55.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC--CcHHHhhhC-CCCCcccEEEeCCEEeecHHHHHH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN--KSELLLQLN-PVHKQVPVLVHGGRPVAESMVILE 71 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~~vP~l~~~~~~l~es~~I~~ 71 (75)
++++|+.++||||.+++-+|+.+|++|++++++..+ ...++.+.. +. .++|++..||..+.......+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHH
Confidence 489999999999999999999999999999999876 555555444 77 699999999988875544433
No 62
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.64 E-value=3.5e-15 Score=72.20 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=60.6
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEY 72 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~y 72 (75)
++++|+.++||+|++++.+|+.+|++|+.+++.... ...++.+.++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 479999999999999999999999999999888654 45667778888 6999999999999999988764
No 63
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.63 E-value=3.4e-15 Score=72.65 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=59.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEe--ecHHHHHHhH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPV--AESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l--~es~~I~~yl 73 (75)
++++|+.++||+|++++.+|+++|++|..++++... ...++.+.++. +++|+++.+|..+ +++.+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 489999999999999999999999999999887653 34567777888 6899999888887 6777777776
No 64
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.1e-16 Score=86.90 Aligned_cols=70 Identities=29% Similarity=0.423 Sum_probs=59.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~~ 75 (75)
++||-++.||||.|+|+++..+|||++.+....++..... ++-+. .+||+|+ +||..+.||..|++|+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~-rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d~ 71 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI-RMIGQ-KQVPILQKEDGRAMPESLDIVHYVDE 71 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh-hhhcc-cccceEEccccccchhhhHHHHHHHH
Confidence 4799999999999999999999999999888766543333 34445 6899998 889999999999999874
No 65
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.62 E-value=2.9e-16 Score=92.24 Aligned_cols=71 Identities=28% Similarity=0.457 Sum_probs=66.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC---CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH---NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+.||.++.|-.+++||+++.++||+|+.++|++. +..++|.+.||. |.||||++++.+|.|+..|+.|+++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHH
Confidence 7899999999999999999999999999999986 578999999999 7999999999999999999999984
No 66
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.61 E-value=9.8e-15 Score=72.58 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=59.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+++|+.++||+|.+++.+|+.+|++|+.++++.+. ...++.+..+. .++|++..+|..+.+..++.++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHH
Confidence 58999999999999999999999999999998653 45566666677 589999999999999888877654
No 67
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.59 E-value=3.6e-14 Score=73.54 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=58.8
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcH----HHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSE----LLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
++++|+.++||+|.+++-+|+.+|++|+.++++...... ++.+.++. .++|.+..+|..+.+...+.+..
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHHH
Confidence 689999999999999999999999999999998664333 34455677 69999999999999988876643
No 68
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.58 E-value=2.4e-14 Score=72.16 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=59.7
Q ss_pred ceEEEeeCCChhHHHHHHHHHh-----cCCceEEEEecCCC-CcHHHhhhCCCC-CcccEEEeCCEEeecHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKL-----KGVEYEYVEVNIHN-KSELLLQLNPVH-KQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p~~-~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
++++|+.++||+|.+++-+|+. .|++|+.++++.+. ...++.+..+.+ .++|++..||..+.+...+.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4999999999999999999999 89999999998653 234555544320 3799999999999999999998753
No 69
>PHA03050 glutaredoxin; Provisional
Probab=99.57 E-value=4.9e-14 Score=74.06 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=58.5
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCC---ceEEEEecCCCC----cHHHhhhCCCCCcccEEEeCCEEeecHHHHHH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGV---EYEYVEVNIHNK----SELLLQLNPVHKQVPVLVHGGRPVAESMVILE 71 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~ 71 (75)
++++|+.++||||.+++-+|+.+|+ +|+.++++.... ..++.+.++. .+||.+..+|..+.....+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 6899999999999999999999999 799999986422 4566777887 699999999999998887765
No 70
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.56 E-value=1.2e-14 Score=68.98 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=50.8
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC-CCcHHHhhhCCCCCcccEEEeCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH-NKSELLLQLNPVHKQVPVLVHGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l 63 (75)
+++|+.++||+|.+++.+|+.+|++|+.++++.+ ....++.+..+. .++|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5899999999999999999999999999999987 355666666666 6899999988764
No 71
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.56 E-value=2.3e-14 Score=70.28 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=46.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGR 61 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~ 61 (75)
+++|+.++||+|++++.+|+++|++|+.++++.+....+..+..+. .++|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999999866433344444566 58999997553
No 72
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.56 E-value=3.5e-14 Score=68.93 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=53.6
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAES 66 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es 66 (75)
++++|+.++||+|.+++.+|+++|++|..++++... ..+++.+.++. +++|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 479999999999999999999999999999987653 34567788888 6999999888777654
No 73
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.55 E-value=7.4e-14 Score=68.68 Aligned_cols=72 Identities=18% Similarity=0.387 Sum_probs=56.0
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCC-cHHHhhhC-CCCCcccEEE-eCCEEeec--HHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNK-SELLLQLN-PVHKQVPVLV-HGGRPVAE--SMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~~~vP~l~-~~~~~l~e--s~~I~~yl~~ 75 (75)
+++||+.++||+|++++.+|++.|++|+.++++.... ...+.+.+ +. +++|+++ ++|..+.+ +..++.+|.+
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l~~ 77 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKLQE 77 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHhhC
Confidence 4799999999999999999999999999988876543 34455665 77 6899997 56777655 4456666643
No 74
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.55 E-value=1.9e-13 Score=68.10 Aligned_cols=71 Identities=23% Similarity=0.337 Sum_probs=60.7
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCc----HHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKS----ELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
++++|+.++||+|.+++-+|+..+++|+.++++..+.. .++.+.++. .++|++..+|..+.++..+.++..
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHH
Confidence 48999999999999999999999999999999876542 334566677 589999999999999999988764
No 75
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.54 E-value=1e-13 Score=70.12 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=57.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcC-----CceEEEEecCCC-CcHHHhhhCCCC-CcccEEEeCCEEeecHHHHHHhHhC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKG-----VEYEYVEVNIHN-KSELLLQLNPVH-KQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~~-~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+++|+.++||+|.+++.+|+.++ ++|+.++++.+. ...++.+..+.+ .+||++..||..+.++..+.+++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHh
Confidence 68999999999999999999984 678888877442 234555554420 3799999999999999999998763
No 76
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.51 E-value=2.9e-13 Score=69.94 Aligned_cols=70 Identities=24% Similarity=0.253 Sum_probs=57.4
Q ss_pred ceEEEee-----CCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 3 EVKLLGT-----WPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
++.+|.. ++||||.+++-+|+.+|++|+++++.... ...++.+.++. .++|.+..+|..+.+...+.+..
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 5788876 78999999999999999999999886442 23445567777 59999999999999988877654
No 77
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=82.15 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=57.0
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+++||.+..||||-+||.+|+.+|++|++++|++-. +.+. +-+.. .+||+|..+|..+.||.+|+.-|+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-r~eI-k~Ssy-kKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-RQEI-KWSSY-KKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-hhhc-ccccc-ccccEEEeccceechhHHHHHHHH
Confidence 589999999999999999999999999999999653 1221 22345 799999987878999999987663
No 78
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2e-13 Score=78.01 Aligned_cols=65 Identities=34% Similarity=0.562 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
..||+|+++.+.|.++|++|...-|+...+.++|+++.|. |++|+|..|+.+.+||..|.++|++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999 7999999999999999999999975
No 79
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.49 E-value=5.6e-13 Score=67.95 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=59.1
Q ss_pred ceEEEee-----CCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 3 EVKLLGT-----WPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 3 ~~~ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
++++|.. ++||+|.+++-+|+.+|++|+.+++..+. ...++.+.++. .++|++..+|..+.+...+.+..+
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHHH
Confidence 5788876 69999999999999999999999987653 34455567777 599999999999999998887643
No 80
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.47 E-value=9.1e-13 Score=64.91 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=47.9
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHhC
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
.+|+|.++.++|+..|++|+.+.... -...|. |++|+|+++|..+.||..|++||.+
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHH
Confidence 57999999999999999998663331 124677 7999999999999999999999964
No 81
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.45 E-value=2.9e-12 Score=63.95 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=58.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCc--eEEEEecCCCCcH----HHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVE--YEYVEVNIHNKSE----LLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+++|+.++||+|.+++-+|+..+++ |+..+++..+... .+.+..+. .++|++..+|..+.++..+.++..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHH
Confidence 5789999999999999999999999 9999888764332 24455666 589999999999999999988764
No 82
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.42 E-value=1.5e-12 Score=81.39 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=56.7
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhh---------hCCCCCcccEEEeCCEEeecHHHHHH
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQ---------LNPVHKQVPVLVHGGRPVAESMVILE 71 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~---------~~p~~~~vP~l~~~~~~l~es~~I~~ 71 (75)
|.++++|+.++||+|.+++-+|+.+||+|++++|+.+....++.+ ..+. .+||++..+|..+.+-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 788999999999999999999999999999999985543344332 2355 589999999998888766543
No 83
>PRK10824 glutaredoxin-4; Provisional
Probab=99.35 E-value=1.1e-11 Score=65.67 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=58.7
Q ss_pred ceEEEee-----CCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 3 EVKLLGT-----WPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
++.+|.. ++||||.+++-+|+..|++|..++++.+. ....+.+.+++ .+||.+..+|..+.+...+....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 5788887 49999999999999999999999887652 34556677888 69999999999999998887654
No 84
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.28 E-value=4.7e-11 Score=65.74 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=57.9
Q ss_pred ceEEEeeC------CChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCC----CCCcccEEEeCCEEeecHHHHHH
Q 038935 3 EVKLLGTW------PSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNP----VHKQVPVLVHGGRPVAESMVILE 71 (75)
Q Consensus 3 ~~~ly~~~------~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p----~~~~vP~l~~~~~~l~es~~I~~ 71 (75)
+++||+.+ +||+|.+++.+|+.++|+|++++|+.+. ...++.+..+ . .++|.+..+|..+.+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 47899999 8999999999999999999999998753 3555655433 3 489999999999999988877
Q ss_pred hH
Q 038935 72 YI 73 (75)
Q Consensus 72 yl 73 (75)
.-
T Consensus 80 L~ 81 (147)
T cd03031 80 LN 81 (147)
T ss_pred HH
Confidence 54
No 85
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.8e-10 Score=58.55 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=60.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHh----hhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLL----QLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~----~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
++.+|+..+||+|.+++.+|...|+++..+++|..+...++. +..+. +++|.+..+|..+..+..+..+-
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 688999999999999999999999999999999876554543 45666 69999999999999998887753
No 86
>PLN02907 glutamate-tRNA ligase
Probab=99.16 E-value=1.7e-10 Score=76.23 Aligned_cols=60 Identities=30% Similarity=0.292 Sum_probs=51.0
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE-eCCEEeecHHHHHHhHhC
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV-HGGRPVAESMVILEYIEE 75 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~es~~I~~yl~~ 75 (75)
|+ ++||+.+.++ +.++.++|++.|++|+.+. .+|. |++|+|+ +||..|+||.||++||++
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~ 61 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIAR 61 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHH
Confidence 77 8999888764 6679999999999999764 2578 7999999 588999999999999974
No 87
>PTZ00062 glutaredoxin; Provisional
Probab=99.15 E-value=4.6e-10 Score=64.75 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=57.6
Q ss_pred ceEEEee-----CCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 3 EVKLLGT-----WPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~~-----~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
++.||.. +.||+|.+++-+|+.+|++|...++..+. ....+.+.+++ .++|.+..+|..+.+...+.+..
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 5788877 68999999999999999999999988653 33455567777 59999999999999988877643
No 88
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.98 E-value=5.3e-09 Score=50.20 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=43.4
Q ss_pred ceEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEee
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
++++|+.++||+|.+++-+|++. ++++..++++. .+++.+..+. ..+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~---~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE---FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc---CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999999998875 56666665542 2445555555 47999998887665
No 89
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.6e-09 Score=51.48 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=49.9
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC-----------CCcHHHhh--hCCCCCcccEEE-eCCEEee
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH-----------NKSELLLQ--LNPVHKQVPVLV-HGGRPVA 64 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~-----------~~~~~~~~--~~p~~~~vP~l~-~~~~~l~ 64 (75)
|++.+||+.+.||.|..+...|+..++.|+.++|... +..++|-+ .+++ -.+|+|. +||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 8888999999999999999999999999999998754 34555543 3444 3599997 6666654
No 90
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.82 E-value=1.5e-08 Score=60.07 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=51.9
Q ss_pred eEEEeeC-------CChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 4 VKLLGTW-------PSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 4 ~~ly~~~-------~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+-||.++ .||+|.++..+|+..+|||+.+.-.. ...+.. |++|.++-+|..+.||.-|..+|.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-------~~rSr~-G~lPFIELNGe~iaDS~~I~~~L~ 115 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-------KRRSRN-GTLPFIELNGEHIADSDLIEDRLR 115 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-------eeeccC-CCcceEEeCCeeccccHHHHHHHH
Confidence 4567773 68999999999999999999764442 234556 799999999999999999999885
No 91
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=98.80 E-value=1.1e-07 Score=48.79 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred eEEEeeCCCh------hHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhC----CCCCcccEEEeCCEEeecHHHHHHh
Q 038935 4 VKLLGTWPSS------FCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLN----PVHKQVPVLVHGGRPVAESMVILEY 72 (75)
Q Consensus 4 ~~ly~~~~~p------~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~l~~~~~~l~es~~I~~y 72 (75)
++||+...++ .|++++.+|+.+||+|++++|+.+. ...++.+.. +. .++|.+..+|..+.+...+.+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHHH
Confidence 6788887654 4889999999999999999998764 445555543 33 5899999999999998777653
No 92
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.76 E-value=2.8e-08 Score=52.43 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=32.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN 38 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~ 38 (75)
++||+.+.||+|++++-+|+++|++|+.+++....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCc
Confidence 58999999999999999999999999999987653
No 93
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.72 E-value=5.3e-08 Score=50.72 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=31.8
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.||+|++++-+|+++|++|+.+++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccC
Confidence 5899999999999999999999999999999754
No 94
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.72 E-value=4.5e-08 Score=53.02 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=32.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.||+|++++-+|+.+|++|+.+++...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 8999999999999999999999999999998654
No 95
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.68 E-value=3e-07 Score=45.12 Aligned_cols=56 Identities=32% Similarity=0.482 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHhcCCc---eEEEEecCCCCcHHHhhhCCCCCcccEEEe-CCEEeecHHHHHHhHh
Q 038935 11 PSSFCYRVIWALKLKGVE---YEYVEVNIHNKSELLLQLNPVHKQVPVLVH-GGRPVAESMVILEYIE 74 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~~~~l~es~~I~~yl~ 74 (75)
.+|.|-++.++|+..+.+ |+.+..+... .+|. |++|+|.+ +++.+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-------~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-------LSPT-GELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-------cCCC-CCCCEEEECCCcEEECHHHHHHhhC
Confidence 478999999999999999 7766555322 6788 79999998 9999999999999984
No 96
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.66 E-value=1.1e-07 Score=50.45 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=31.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.|+.|++++-+|+++|++|+.+++...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCC
Confidence 8999999999999999999999999999998654
No 97
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.59 E-value=2.7e-07 Score=50.07 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=32.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.|+.|++++-+|+++|++|+.+++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 8999999999999999999999999999998754
No 98
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.59 E-value=2.5e-07 Score=50.25 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=32.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.|+.|++++-.|+.+|++|+++++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 8999999999999999999999999999998754
No 99
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.57 E-value=1.8e-07 Score=49.72 Aligned_cols=34 Identities=21% Similarity=0.530 Sum_probs=31.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.||+|++++-+|+++|++|+.+++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGED 34 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCC
Confidence 5899999999999999999999999999998754
No 100
>PRK10026 arsenate reductase; Provisional
Probab=98.55 E-value=3.9e-07 Score=49.99 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=34.5
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|+++++|+.+.|.-|++++-.|+++|++|+++++...
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 7889999999999999999999999999999998654
No 101
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.52 E-value=1.6e-06 Score=42.73 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=40.1
Q ss_pred eEEEeeCCChhHHHH----HHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEee
Q 038935 4 VKLLGTWPSSFCYRV----IWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
+++|+ ++||.|..+ +-++++.|.+++.+.++. .++..+. .. ..+|++..||..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~-~v-~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEA-GV-TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHc-CC-CcCCEEEECCEEEE
Confidence 77877 999999998 668888899988888872 2333333 34 46999998775543
No 102
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.48 E-value=5e-06 Score=41.48 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=39.3
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcC--CceEEEEecCCCCcHHHhhhCCCCCcccEEEeCC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKG--VEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGG 60 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~ 60 (75)
+++||+.++|+.|..++..|+... .+++...+|..+ .+++.+.... .||+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-d~~l~~~Y~~--~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-DPELFEKYGY--RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-THHHHHHSCT--STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-CHHHHHHhcC--CCCEEEEcC
Confidence 489999999999999999999643 455566666554 4445555544 699999766
No 103
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.48 E-value=6.9e-07 Score=46.75 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.|+.|++++-.|+++|++|+++++...
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccC
Confidence 5899999999999999999999999999998754
No 104
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.42 E-value=1.1e-06 Score=46.63 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=32.0
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.++||+.+.|+.|++++-+|+++|++|+++++...
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 37999999999999999999999999999988644
No 105
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.32 E-value=3.1e-06 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=32.2
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
++|+|+.+.|.-|++++..|+++||+|+.+++...
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~ 36 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKT 36 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecC
Confidence 38999999999999999999999999999987644
No 106
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.32 E-value=8.3e-06 Score=40.12 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=39.2
Q ss_pred ceEEEeeCCChhHHHHHHHHHh----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKL----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGR 61 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~ 61 (75)
++++|+.++||+|..+.-.|+. .+..+....|+..+. ++..+..+. ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-PQKAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-HHHHHHcCC-ccCCEEEECCE
Confidence 4789999999999999887764 344455556665443 344444555 47999987764
No 107
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.3e-06 Score=42.63 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=54.6
Q ss_pred ceEEEe-----eCCChhHHHHHHHHHhcC-CceEEEEecCC-CCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 3 EVKLLG-----TWPSSFCYRVIWALKLKG-VEYEYVEVNIH-NKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~-----~~~~p~~~~~~~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
++.||- +|.|+|+.++--+|...| ++|..++|-.+ +-+..+.+.+.+ -++|.|-.+|..+..|.-+.+-.
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHH
Confidence 355554 378999999999999999 78888877655 234555566778 49999999999999998877644
No 108
>PHA02125 thioredoxin-like protein
Probab=98.23 E-value=1.2e-05 Score=39.46 Aligned_cols=52 Identities=29% Similarity=0.392 Sum_probs=38.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHG 59 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~ 59 (75)
+.+|+.++|+.|..+.-.|+. +++....++.+. ..++.+...- ..+|++..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~g 53 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDE-GVELTAKHHI-RSLPTLVNT 53 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCC-CHHHHHHcCC-ceeCeEECC
Confidence 789999999999999888864 566666677544 4566666655 479999843
No 109
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.22 E-value=1.3e-05 Score=40.74 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=40.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEee
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
++.+|..++||+|..+.-+++.. ++.+..++++ + .++..+..+- ..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~-~~e~a~~~~V-~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--L-FQDEVEERGI-MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--h-CHHHHHHcCC-ccCCEEEECCEEEE
Confidence 47889999999999988777665 5666666655 2 3444444444 36999998776544
No 110
>PRK10853 putative reductase; Provisional
Probab=98.19 E-value=6.6e-06 Score=43.92 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=31.7
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.|.-|++++-.|+++|++|+.+++...
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 8999999999999999999999999999987644
No 111
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.19 E-value=7.7e-06 Score=44.13 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=32.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.+++|+.+.|.-|++++-.|+++|++|+.+++...
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 47999999999999999999999999999987644
No 112
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.11 E-value=1.8e-05 Score=35.96 Aligned_cols=54 Identities=31% Similarity=0.298 Sum_probs=38.3
Q ss_pred eEEEeeCCChhHHHHHHHHH-----hcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALK-----LKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVH 58 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 58 (75)
+.+|+..+|++|.+.+..+. ..++.+..++++............+. +.+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 36788899999999999999 56677776666654433333345566 58999873
No 113
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.08 E-value=1.7e-05 Score=41.98 Aligned_cols=34 Identities=24% Similarity=0.118 Sum_probs=31.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.|+-|++++-.|+++|++|+.+++...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKN 34 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCC
Confidence 5899999999999999999999999999988654
No 114
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.07 E-value=4.7e-05 Score=39.53 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=44.4
Q ss_pred CcceEEEeeCCChh------HHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhC---------CCCCcccEEEeCCEEee
Q 038935 1 MEEVKLLGTWPSSF------CYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLN---------PVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 1 M~~~~ly~~~~~p~------~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~---------p~~~~vP~l~~~~~~l~ 64 (75)
|. +++|....++. ++++..+|+.++|+|+.++|..++ ...++++.. +. .-.|.+..||..++
T Consensus 1 m~-I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 1 MV-IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCG 78 (99)
T ss_dssp -S-EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEE
T ss_pred CE-EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEe
Confidence 56 88998876543 678999999999999999998864 344444433 22 23478889998888
Q ss_pred cHHHHHHh
Q 038935 65 ESMVILEY 72 (75)
Q Consensus 65 es~~I~~y 72 (75)
+-..+-+.
T Consensus 79 dye~f~ea 86 (99)
T PF04908_consen 79 DYEDFEEA 86 (99)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 76665543
No 115
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.05 E-value=2e-05 Score=41.58 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=31.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+++|+.+.|.-|++++-.|+++|++|+.+++...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 5899999999999999999999999999987643
No 116
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.02 E-value=5.2e-05 Score=37.29 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=37.0
Q ss_pred eEEEeeCCChhHHHHHH----HHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeec
Q 038935 4 VKLLGTWPSSFCYRVIW----ALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAE 65 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 65 (75)
+++ ..++||+|.++.- ++...|+.++.+++ ...++. ...+. ..+|+++.||...+.
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv-~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGV-MSVPALVINGKVVFV 62 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT--SSSSEEEETTEEEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCC-CCCCEEEECCEEEEE
Confidence 777 4566999996655 55566877766654 335555 44445 479999988876544
No 117
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00019 Score=42.11 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=52.2
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
+.|++++.+.-+|..+|++|...+|-.++ -+.-.++.+-+ -+.|.|-.+|..+.++.-|..-+
T Consensus 152 P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred ccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHh
Confidence 67999999999999999999999998764 34445567778 49999999999999887776544
No 118
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.47 E-value=0.0016 Score=34.84 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=34.6
Q ss_pred eEEEeeCCChhHHHHHHH----HHhcCCceEEEEecCCC--------CcHHHhhhC----CCCCcccEEE--eCCE
Q 038935 4 VKLLGTWPSSFCYRVIWA----LKLKGVEYEYVEVNIHN--------KSELLLQLN----PVHKQVPVLV--HGGR 61 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~----l~~~gi~~~~~~v~~~~--------~~~~~~~~~----p~~~~vP~l~--~~~~ 61 (75)
+..|+.++||+|+.+.-. .+..++++-.++++... .-.+|.+.. .. ..+|+++ .+|.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i-~~~PT~v~~k~Gk 101 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF-MGTPTFVHITDGK 101 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC-CCCCEEEEEeCCe
Confidence 456888999999986544 44455777777776431 112444432 23 3499987 4663
No 119
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.33 E-value=0.00054 Score=35.91 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=24.5
Q ss_pred EeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 7 LGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|+.+.|.-|++++-.|+++|++|+.+++...
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhC
Confidence 7889999999999999999999999988653
No 120
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=97.19 E-value=0.0016 Score=34.46 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHhc---CCceEEEEecCCCCcHHHhhhC-CCCCcccEEE-eCCE-------------EeecHHHHHHh
Q 038935 11 PSSFCYRVIWALKLK---GVEYEYVEVNIHNKSELLLQLN-PVHKQVPVLV-HGGR-------------PVAESMVILEY 72 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~-p~~~~vP~l~-~~~~-------------~l~es~~I~~y 72 (75)
.||.|..+.-+|... .-..+.+.|+....+.+..+.- ..+...|+|+ .+|. .|.|+..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 699999998887764 2345566777665555555432 2124699998 3443 79999999999
Q ss_pred HhC
Q 038935 73 IEE 75 (75)
Q Consensus 73 l~~ 75 (75)
|++
T Consensus 103 La~ 105 (112)
T PF11287_consen 103 LAE 105 (112)
T ss_pred HHH
Confidence 974
No 121
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.12 E-value=0.0078 Score=30.53 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=34.7
Q ss_pred eEEEeeCCChhHHHHHHHHHh----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
+.+|+.++|+.|....-.++. .+-.+....++.+. .+++...... ..+|++. .+|..
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~ 79 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKEL 79 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeE
Confidence 456777999999988777755 11124444555433 3455544444 4799886 45644
No 122
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.11 E-value=0.0034 Score=33.02 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=32.8
Q ss_pred eEEE-eeCCChhHHHHHHHHHhcCCc---eEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLL-GTWPSSFCYRVIWALKLKGVE---YEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly-~~~~~p~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+.++ +.+|||+|+.++-+|++..-. .+...++.+ ..+++.+.... ..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHcCC-CcCCEEE
Confidence 4454 568999999888777754422 233334433 34566666666 5799987
No 123
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.05 E-value=0.0056 Score=35.58 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=34.5
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCC---ceEEEEecCCCCcHHHhhhCCCCCcccEEEe
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGV---EYEYVEVNIHNKSELLLQLNPVHKQVPVLVH 58 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 58 (75)
.+++|+.++||+|..+..+++..-- ......++... .++..+...- ..+|+++.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V-~~vPtl~i 192 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGV-MSVPKIVI 192 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCC-ccCCEEEE
Confidence 3567899999999988877765321 22233455433 4555555555 47999984
No 124
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.02 E-value=0.0042 Score=40.78 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=39.1
Q ss_pred ceEEEeeCCChhHHHHHHHH----Hhc-CCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEe
Q 038935 3 EVKLLGTWPSSFCYRVIWAL----KLK-GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPV 63 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l----~~~-gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l 63 (75)
.+++|..++||+|..+..++ .+. +|..+.+++.. .+++.+.... ..||.++.||..+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~---~~~~~~~~~v-~~vP~~~i~~~~~ 540 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH---FPDLKDEYGI-MSVPAIVVDDQQV 540 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc---cHHHHHhCCc-eecCEEEECCEEE
Confidence 47889999999999775543 334 67777766663 3555544444 3699999887554
No 125
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.92 E-value=0.0014 Score=42.55 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=39.5
Q ss_pred ceEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeec
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAE 65 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 65 (75)
.+++|..+.||+|..+..+++.. +|..+.+ +- ...+++...... ..||.+..++..+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i--d~-~~~~~~~~~~~v-~~VP~~~i~~~~~~~ 182 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI--DG-ALFQDEVEARNI-MAVPTVFLNGEEFGQ 182 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE--Ec-hhCHhHHHhcCC-cccCEEEECCcEEEe
Confidence 47899999999999887666554 3444333 22 345666655555 479999987765554
No 126
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.89 E-value=0.0014 Score=42.52 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=39.5
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcC-----CceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeec
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKG-----VEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAE 65 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 65 (75)
.+++|..+.||+|..+..+++... |..+. ++- ...+++...... ..||.+..++..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~--id~-~~~~~~~~~~~v-~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTM--IDG-ALFQDEVEALGI-QGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE--EEc-hhCHHHHHhcCC-cccCEEEECCcEEEe
Confidence 478999999999998877766543 33333 332 245566655555 479999987766554
No 127
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.88 E-value=0.014 Score=28.31 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=35.8
Q ss_pred eEEEeeCCChhHHHHHHHHHh-----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL-----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGR 61 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~ 61 (75)
+.+++.++|+.|....-.++. .++.+-.++++. ..++.+.... ..+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE---NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC---ChhHHHhcCc-ccccEEEEEECCE
Confidence 556788899999999888777 566665555442 3444444445 4699876 3554
No 128
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0041 Score=37.62 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=50.8
Q ss_pred eEEEeeCCC------hhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCC---CCcccEEEeCCEEeecHHHHHHh
Q 038935 4 VKLLGTWPS------SFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPV---HKQVPVLVHGGRPVAESMVILEY 72 (75)
Q Consensus 4 ~~ly~~~~~------p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~---~~~vP~l~~~~~~l~es~~I~~y 72 (75)
+.+|..... -.|..||.+|+..+|.|++++|+++. ...|+..+-+. .-.+|.+..+|..|.....|.+-
T Consensus 133 VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 133 VVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred EEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 455655432 24899999999999999999999984 45555543221 14799888999999998887764
No 129
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0068 Score=35.59 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=46.3
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
...-|..|+.+|+-.++||.++--. ..+| ++|. |++|.|..+.+.+.|-.+|..+.+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVe 89 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVE 89 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHH
Confidence 3456899999999999999976433 2333 6787 799999999999999999998865
No 130
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.71 E-value=0.0073 Score=30.41 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=43.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhc----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe------ecHHHHHH
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV------AESMVILE 71 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l------~es~~I~~ 71 (75)
+..++.++|+.|...+-.+... +-++....++... ..++.+.... ..+|++. .+|... .+...|.+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE-NKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT-SHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhc-cchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 4567889999999887555432 2255555666544 3555555555 5799987 566443 34566666
Q ss_pred hHh
Q 038935 72 YIE 74 (75)
Q Consensus 72 yl~ 74 (75)
+|+
T Consensus 99 ~i~ 101 (103)
T PF00085_consen 99 FIE 101 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 131
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.017 Score=35.38 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=45.4
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCc----eEEEEecCCCCcHH----------------------Hhhh----CCCCCc
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVE----YEYVEVNIHNKSEL----------------------LLQL----NPVHKQ 52 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~----------------------~~~~----~p~~~~ 52 (75)
.+.||.+-.||+++|..++=+.||++ ...+.-.+.++... +.+. ++. -+
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR-vT 129 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR-VT 129 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc-ee
Confidence 46799999999999999999999986 22221111111111 1111 223 37
Q ss_pred ccEEEeCC---EEeecHHHHHHhHh
Q 038935 53 VPVLVHGG---RPVAESMVILEYIE 74 (75)
Q Consensus 53 vP~l~~~~---~~l~es~~I~~yl~ 74 (75)
||+|.|.. .+-.||..|++-+.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N 154 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFN 154 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHH
Confidence 99999743 34578999998763
No 132
>PHA02278 thioredoxin-like protein
Probab=96.62 E-value=0.033 Score=28.96 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=34.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhc------CCceEEEEecCCC-CcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK------GVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~------gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
+.-|+.+||+.|+...-.++.. .+++..++++... ..+++.+...- ..+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 3457779999999777555432 2345444454321 13555554444 4799987 466544
No 133
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.57 E-value=0.033 Score=28.62 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=33.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
+..|+.+||+.|+...-.|+.. ++.+-.++++......++.+...- ..+|++. .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 3457778999999776555432 344433333322222456555555 4699886 366543
No 134
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.50 E-value=0.025 Score=28.88 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=31.1
Q ss_pred eEEEeeCCChhHHHHHHHH------H--hcCCceEEEEecCCCC---cHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWAL------K--LKGVEYEYVEVNIHNK---SELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l------~--~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|++|++..-.+ . ..+ .+....++.... ..++.+.... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 4568889999999876433 1 121 344445554321 3556555555 4799886
No 135
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.44 E-value=0.048 Score=28.67 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=35.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCC---ceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGV---EYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
+..|+.++|+.|+.+.-.+++..- ......|+.+. .+++.+...- ..+|++. .+|..+
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v 88 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTV 88 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEE
Confidence 346777999999988776655211 13444555443 3445555555 4799887 466544
No 136
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.34 E-value=0.044 Score=27.42 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=35.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhc----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
+..|+.++|+.|++..-.|+.. +-.+....++... ..++.+.... ..+|++. .+|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~-~~~~~~~~~i-~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE-LPEISEKFEI-TAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc-CHHHHHhcCC-ccccEEEEEECCEE
Confidence 3567789999999887766652 3345555566443 3445444444 4699886 45643
No 137
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.32 E-value=0.045 Score=30.22 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=45.7
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhh----CCCCCcccEEEeCCEEee---cHHHHHHhHhC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQL----NPVHKQVPVLVHGGRPVA---ESMVILEYIEE 75 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~----~p~~~~vP~l~~~~~~l~---es~~I~~yl~~ 75 (75)
++++|..+.|+.|..=--.|+.+|.+...+..+.. ..+++. -.. +.--+.+++|..+- -..+|.+.|++
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~---~alK~~~gIp~e~-~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF---LALKRRLGIPYEM-QSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH---HHHHHhcCCChhh-ccccEEEEcCEEEeccCCHHHHHHHHhC
Confidence 57899999999999999999999988887655532 222211 112 23456677776553 35677777653
No 138
>PTZ00051 thioredoxin; Provisional
Probab=96.19 E-value=0.057 Score=27.09 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=33.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhc---CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK---GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
+..|+.++|+.|+...-.+... .-.+....++.+. ..++.+.... ..+|+++ .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeE
Confidence 3467789999999887666552 1123334444332 3455555555 4799886 35543
No 139
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.16 E-value=0.044 Score=29.18 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=34.3
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCc----eEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVE----YEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
.-|+.+|||.|+...-.|++.--. .....|+.++ .+++.+...- ..+|++. .+|..
T Consensus 19 V~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~ 80 (114)
T cd02954 19 IRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKH 80 (114)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEE
Confidence 347889999999886666443222 2334455443 4566655555 4799886 46644
No 140
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.11 E-value=0.05 Score=28.72 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=29.8
Q ss_pred eEEEeeCCChhHHHHHHHHH-------hcCCceEEEEecCCCC------------cHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALK-------LKGVEYEYVEVNIHNK------------SELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~-------~~gi~~~~~~v~~~~~------------~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|++|++..-.+. ..+-.+....++.++. ..++...... ..+|+++
T Consensus 18 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~ 89 (125)
T cd02951 18 LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-RFTPTVI 89 (125)
T ss_pred EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC-ccccEEE
Confidence 45677899999998763321 1111344445554332 2455544444 4699876
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.07 E-value=0.063 Score=31.21 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=33.7
Q ss_pred eEEEee---CCChhHHHHHHHHHhcC-----CceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGT---WPSSFCYRVIWALKLKG-----VEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~---~~~p~~~~~~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+.+|+. +|||.|..+.-.+++.. +.+..+.++.+ ..+++.+...- ..+|++.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~-~~~~l~~~~~V-~~~Pt~~ 82 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP-EDKEEAEKYGV-ERVPTTI 82 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc-ccHHHHHHcCC-CccCEEE
Confidence 567777 89999998887776552 33334444432 35556555555 4799987
No 142
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.07 E-value=0.048 Score=27.29 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=34.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcC----CceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKG----VEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
+..|+.++|+.|+...-.++... -.+....++.+. ..++.+..+. ..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 34577789999998876665422 234445555443 4555554445 4699887 56643
No 143
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.055 Score=32.95 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCc
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVE 28 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~ 28 (75)
.+-||..-.||+++|+.++++.||++
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~ 62 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLE 62 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCcc
Confidence 35689999999999999999999975
No 144
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.78 E-value=0.093 Score=26.11 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=38.0
Q ss_pred EEEeeCCChhHHHHHHHHHhc----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe------ecHHHHHHh
Q 038935 5 KLLGTWPSSFCYRVIWALKLK----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV------AESMVILEY 72 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l------~es~~I~~y 72 (75)
..++.++|+.|+...-.++.. +-......++.+. ..++.+.... ..+|++. .+|..+ ..+..+..+
T Consensus 19 i~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~ 96 (101)
T TIGR01068 19 VDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE-NPDIAAKYGI-RSIPTLLLFKNGKEVDRSVGALPKAALKQL 96 (101)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHcCC-CcCCEEEEEeCCcEeeeecCCCCHHHHHHH
Confidence 456678999999886555442 2224444555433 3445444445 4799876 355321 224566666
Q ss_pred Hh
Q 038935 73 IE 74 (75)
Q Consensus 73 l~ 74 (75)
|.
T Consensus 97 l~ 98 (101)
T TIGR01068 97 IN 98 (101)
T ss_pred HH
Confidence 54
No 145
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.74 E-value=0.03 Score=29.91 Aligned_cols=36 Identities=36% Similarity=0.430 Sum_probs=31.7
Q ss_pred Cc-ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecC
Q 038935 1 ME-EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 1 M~-~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~ 36 (75)
|. .+.|++.+.|+-|+.+..+|.+..=+|+...|+.
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 44 5789999999999999999999988999988874
No 146
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.69 E-value=0.13 Score=27.20 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=32.4
Q ss_pred eEEEeeCCChhHHHHHHHHHh------cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--e-CCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKL------KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--H-GGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~-~~~~l 63 (75)
+..|+.++|+.|++..-.+.. .+..|..++++..... .-...+..++.+|++. + +|..+
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~-~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP-KDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc-hhhhcccCCCccceEEEECCCCCCc
Confidence 345777999999988655554 2335655556543211 1122233312499886 3 45443
No 147
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.68 E-value=0.12 Score=26.84 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=37.1
Q ss_pred eEEEeeCCChhHHHHHHHHHh-----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe------ecHHHHH
Q 038935 4 VKLLGTWPSSFCYRVIWALKL-----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV------AESMVIL 70 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l------~es~~I~ 70 (75)
+..|+.++|+.|+...-.+.+ .+.......++.+. .+.+....+- ..+|++. .+|..+ .....+.
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~~~~~~G~~~~~~l~ 105 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQVTFYHDSSFTKQHVV 105 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEEEEEecCCCCHHHHH
Confidence 455788999999866544322 22223333444333 3344444445 4799886 566432 1245555
Q ss_pred HhHh
Q 038935 71 EYIE 74 (75)
Q Consensus 71 ~yl~ 74 (75)
++|.
T Consensus 106 ~~i~ 109 (111)
T cd02963 106 DFVR 109 (111)
T ss_pred HHHh
Confidence 5554
No 148
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.18 Score=31.33 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEe-CCEEeecHHHHHHhHh
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVH-GGRPVAESMVILEYIE 74 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~~~~l~es~~I~~yl~ 74 (75)
-|+-|..+.++++..+-|.+.+..+..- ..|. |++|+|+. +|..+.+-..|..+|.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~s-g~LP~l~~~ng~~va~~~~iv~~L~ 72 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPS-GKLPYLITDNGTKVAGPVKIVQFLK 72 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCC-------CCCC-CCCCeEEecCCceeccHHHHHHHHH
Confidence 4889999999999999665544333211 4566 79999995 4599999999999885
No 149
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.52 E-value=0.14 Score=26.43 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=30.7
Q ss_pred eEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHh-hhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLL-QLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~ 57 (75)
+..|+.++||.|+...-.+... +-.+....++.+.....+. +..+. ..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 5568889999999776555442 2234444455443223333 23445 4799886
No 150
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.49 E-value=0.11 Score=27.13 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=32.9
Q ss_pred EEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 5 KLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
..|+.++|+.|+.+.-.++.. ++.| ..++.++. ++.+...- ..+|++. .+|..+
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f--~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v 89 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKF--VKINAEKA--FLVNYLDI-KVLPTLLVYKNGELI 89 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEE--EEEEchhh--HHHHhcCC-CcCCEEEEEECCEEE
Confidence 457779999999877666542 3443 34443332 55544445 4799887 466543
No 151
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.37 E-value=0.13 Score=26.24 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=31.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhc----C-CceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK----G-VEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~----g-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
+..|+.+||+.|+...-.++.. + -......++.+ ..+..+...- ..+|++. .+|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEE
Confidence 3467789999999776555432 2 11233334433 3344444444 4689876 46643
No 152
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.04 E-value=0.12 Score=26.49 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=31.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.+||+.|+...-.+++. ++.+ ..++.....+++.+...- ..+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~--~~vd~~~~~~~l~~~~~V-~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRH--LAIEESSIKPSLLSRYGV-VGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCce--EEEECCCCCHHHHHhcCC-eecCEEE
Confidence 4457788999999887555443 3333 344443234555555555 4799886
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.16 Score=27.40 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=32.9
Q ss_pred CCChhHHHHH----HHHHhcCCceEEEEecCCCC------cHHHhhhCCCCCcccEEE-eC--CEEeecHHHH
Q 038935 10 WPSSFCYRVI----WALKLKGVEYEYVEVNIHNK------SELLLQLNPVHKQVPVLV-HG--GRPVAESMVI 69 (75)
Q Consensus 10 ~~~p~~~~~~----~~l~~~gi~~~~~~v~~~~~------~~~~~~~~p~~~~vP~l~-~~--~~~l~es~~I 69 (75)
+|||.|.++. -+|++.+-+...+.+...+. ...|++....-..||+|. .+ ...+.+...-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~ 115 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCL 115 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhh
Confidence 5899999774 56666666666666655432 223332211102489987 34 2444444443
No 154
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.68 E-value=0.2 Score=27.90 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=32.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCC-----CcccEEE--eCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVH-----KQVPVLV--HGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~-----~~vP~l~--~~~~~l 63 (75)
+..|+.++||.|+...-.++.. +-.+....|+.++ .++..+...-. +++|++. .+|..+
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-FPNVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-CHHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 4567888999999776555432 2224444455433 23333322221 2489886 566543
No 155
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.55 E-value=0.15 Score=25.83 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=30.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCC----ceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGV----EYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.++...- .+....++-++ .+++.+...- ..+|++.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~ 77 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD-DRMLCRSQGV-NSYPSLY 77 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc-cHHHHHHcCC-CccCEEE
Confidence 446778999999987655544321 13344455443 3445444444 4799886
No 156
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=94.49 E-value=0.13 Score=26.09 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=30.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCC----ceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGV----EYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|++..-.++...- .+....++.+. .+++.+...- ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 446778999999977554443221 13333444433 3455444455 4799886
No 157
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=94.44 E-value=0.38 Score=25.76 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCChhHHHHHHHH----Hhc--CCceEEEEecCC----CCcHHHhhhCCCCC-cccEEE--eCCEEeec
Q 038935 10 WPSSFCYRVIWAL----KLK--GVEYEYVEVNIH----NKSELLLQLNPVHK-QVPVLV--HGGRPVAE 65 (75)
Q Consensus 10 ~~~p~~~~~~~~l----~~~--gi~~~~~~v~~~----~~~~~~~~~~p~~~-~vP~l~--~~~~~l~e 65 (75)
+|||.|+.+.-.+ ++. ++.+-.++++.. +...++...... . .+|++. .++..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 7999999775433 333 344444444332 123455543333 3 699987 34444443
No 158
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=94.43 E-value=0.5 Score=28.00 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=33.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhc----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
+..|+.+||+.|+...-.+++. +-......++... .+++.+...- ..+|++. .+|..
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~ 118 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKM 118 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEE
Confidence 4567789999999776555442 2123333444332 3455555555 4799886 56644
No 159
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=94.39 E-value=0.42 Score=26.10 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=29.7
Q ss_pred eEEEeeCCChhHHHHHHHHHhc----CCceEEEEecCCC-CcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK----GVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.+||+.|....-.+... +-.+..+.++.+. ...++.+.... ..+|+++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v 81 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFV 81 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEE
Confidence 3457778999999776555432 2123344444432 22344444444 4699876
No 160
>PRK09381 trxA thioredoxin; Provisional
Probab=94.27 E-value=0.35 Score=24.74 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=32.9
Q ss_pred eEEEeeCCChhHHHHHHHHHh----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKL----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
+..++.++||.|....-.++. .+-.+....++.+.. +.+.+..+. ..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGI-RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCC-CcCCEEEEEeCCeEE
Confidence 345677899999987655543 222244455555433 333333344 4799886 466543
No 161
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=94.25 E-value=0.2 Score=26.47 Aligned_cols=52 Identities=8% Similarity=-0.073 Sum_probs=30.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCc----eEEEEecCCCCcHHHh-hhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVE----YEYVEVNIHNKSELLL-QLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~ 57 (75)
+..|+.+||+.|+...-.+++..-. .....|+-+. ..++. +...- ..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I-~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF-FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC-cccCEEE
Confidence 4568889999999887666654322 2333444332 33343 23333 3689886
No 162
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=94.21 E-value=0.04 Score=29.66 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=11.7
Q ss_pred cccEEE--eCCEEeecHHHHHHhHh
Q 038935 52 QVPVLV--HGGRPVAESMVILEYIE 74 (75)
Q Consensus 52 ~vP~l~--~~~~~l~es~~I~~yl~ 74 (75)
..|-|. -+|..++|++||+|||.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~ 59 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLA 59 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHT
T ss_pred ccceeeecCCceEEecccHHHHHHH
Confidence 458785 46899999999999986
No 163
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.21 E-value=0.12 Score=27.72 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=28.7
Q ss_pred eCCChhHHHHHHHHHhc-----CCceEEEEecCCC--CcHHHhhhCCCCCcccEEEeCCEEe
Q 038935 9 TWPSSFCYRVIWALKLK-----GVEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVHGGRPV 63 (75)
Q Consensus 9 ~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~~~~l 63 (75)
..+||.|.+-.-.|... +-.+..+-|..+. ....|.+.... ..|++.|.+..+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~--~~p~~~D~~~~~ 92 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL--PFPVYADPDRKL 92 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC--CCeEEECCchhH
Confidence 46999999754333332 1234444555442 22345555544 589888765443
No 164
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.20 E-value=0.34 Score=24.27 Aligned_cols=53 Identities=11% Similarity=0.010 Sum_probs=31.9
Q ss_pred eEEEeeCCChhHHHHHHHHHh----cC--CceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL----KG--VEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~----~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.+.. .+ -.+....++.....+++.+..+. ..+|++.
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~ 80 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLK 80 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEE
Confidence 456788999999866544433 22 23555556644424555554455 4799886
No 165
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.19 E-value=0.12 Score=25.88 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=29.8
Q ss_pred eEEEeeCCChhHHHHHHHHHh-----cCC-ceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL-----KGV-EYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~-----~gi-~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.++. .+- .+....++-. ...++.+.... ..+|.+.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-AEKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-chHHHHHhCCC-CcCCEEE
Confidence 567888999999976544433 221 1333334432 34555544455 4799884
No 166
>PRK10996 thioredoxin 2; Provisional
Probab=94.19 E-value=0.46 Score=25.79 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=39.7
Q ss_pred eEEEeeCCChhHHHHHHHHHh----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEee------cHHHHHH
Q 038935 4 VKLLGTWPSSFCYRVIWALKL----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPVA------ESMVILE 71 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l~------es~~I~~ 71 (75)
+..|+.++|+.|+...-.+.. .+-.+....++.+. .+++.+...- ..+|++. .+|..+. ....|..
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~-~~~l~~~~~V-~~~Ptlii~~~G~~v~~~~G~~~~e~l~~ 133 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA-ERELSARFRI-RSIPTIMIFKNGQVVDMLNGAVPKAPFDS 133 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CHHHHHhcCC-CccCEEEEEECCEEEEEEcCCCCHHHHHH
Confidence 456777999999976544443 23234455555543 4455544445 4799886 4665432 2344555
Q ss_pred hHh
Q 038935 72 YIE 74 (75)
Q Consensus 72 yl~ 74 (75)
+|+
T Consensus 134 ~l~ 136 (139)
T PRK10996 134 WLN 136 (139)
T ss_pred HHH
Confidence 554
No 167
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.14 E-value=0.037 Score=29.95 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=25.9
Q ss_pred ceEEEeeCCChhHHHHH----HHHHhc-CCceEEEEecCC-CCcHHHhhhCCCCCcccEEE
Q 038935 3 EVKLLGTWPSSFCYRVI----WALKLK-GVEYEYVEVNIH-NKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~----~~l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~ 57 (75)
.+.+++-+|||.|.+.- -+++.. ++++.....+.. +....|+. ++. ..||+++
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I 102 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFI 102 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEE
Confidence 36678889999998653 344444 566655433321 12233444 555 6899997
No 168
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.06 E-value=0.19 Score=25.81 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=32.8
Q ss_pred eEEEeeCCChhHHHHHHHHHhcC------C----ceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKG------V----EYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGR 61 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~g------i----~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~ 61 (75)
+..|+.++|+.|+...-.++..- . .+....++-+. ..++.+.... ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-~~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-ESDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CHHHHHhCCC-CcCCEEEEEeCCc
Confidence 45677899999998875554221 1 23334444433 3455555555 4799886 3554
No 169
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=93.99 E-value=0.22 Score=27.93 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=27.5
Q ss_pred ceEEEeeCCChhHHHH----HHHHHhc-CCceEEEEecCCC
Q 038935 3 EVKLLGTWPSSFCYRV----IWALKLK-GVEYEYVEVNIHN 38 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~----~~~l~~~-gi~~~~~~v~~~~ 38 (75)
++++|+...||||... +-+.+.. ++.++.+.+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 4789999999999855 4455555 8999998887653
No 170
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.99 E-value=0.39 Score=24.18 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=38.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE--e---ecHHHHHH
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP--V---AESMVILE 71 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~--l---~es~~I~~ 71 (75)
+..|+.++|+.|....-.+... +..+....++..+ .+.+.+...- ..+|++. .+|.. . .....|..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~G~~~~~~l~~ 97 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIYHAKDGVFRRYQGPRDKEDLIS 97 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEEEeCCCCEEEecCCCCHHHHHH
Confidence 4567889999999776554432 2334444444433 3344444444 4689886 34432 1 13455566
Q ss_pred hHhC
Q 038935 72 YIEE 75 (75)
Q Consensus 72 yl~~ 75 (75)
++.|
T Consensus 98 ~i~~ 101 (101)
T cd02994 98 FIEE 101 (101)
T ss_pred HHhC
Confidence 6543
No 171
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=93.96 E-value=0.23 Score=26.34 Aligned_cols=59 Identities=24% Similarity=0.153 Sum_probs=36.4
Q ss_pred eEEEeeCC--ChhHHHHHHHHHhcCCce----EEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEee
Q 038935 4 VKLLGTWP--SSFCYRVIWALKLKGVEY----EYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPVA 64 (75)
Q Consensus 4 ~~ly~~~~--~p~~~~~~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l~ 64 (75)
+..|+..+ ||.|..+.-.|++.--.| ....++.++ .+++.....- ..+|++. .+|..+.
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~-~~~la~~f~V-~sIPTli~fkdGk~v~ 97 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD-EQALAARFGV-LRTPALLFFRDGRYVG 97 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC-CHHHHHHcCC-CcCCEEEEEECCEEEE
Confidence 44566664 999998887776543333 233444433 3466655555 5799997 5776553
No 172
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=93.88 E-value=0.23 Score=24.89 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=29.2
Q ss_pred eEEEeeCCChhHHHHHHHHHh-----cC--CceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL-----KG--VEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~-----~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.+.. .+ -.+....++.+. .....+...- ..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~ 78 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-HRELCSEFQV-RGYPTLL 78 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-ChhhHhhcCC-CcCCEEE
Confidence 456778899999976543322 22 134445555443 2334333344 4699876
No 173
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.48 Score=24.82 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=34.2
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceE---EEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYE---YVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~---~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
.-|+..|||.|..+.=.++..-..|. ...+|.++ ..++.+...- ..+|+++ .+|..+
T Consensus 26 vdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~~~~~V-~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 26 VDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVAKEFNV-KAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHHHhcCc-eEeeEEEEEECCEEE
Confidence 34777899999988655555433322 22334334 5666655445 4799997 466443
No 174
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.73 E-value=0.15 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHh--cCCceEEEEec
Q 038935 3 EVKLLGTWPSSFCYRVIWALKL--KGVEYEYVEVN 35 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~--~gi~~~~~~v~ 35 (75)
.+.+|+.+.||+|++..-.+.. .++.+..+.+.
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p 114 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVP 114 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhhccCceEEEEEEcC
Confidence 3677888999999999888873 45555555443
No 175
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.5 Score=28.11 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=40.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l 63 (75)
+++|....|--|....-+|+.+|+-=....++-........+ +.- =.+|.+..||..+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~-~~V-~SvP~Vf~DGel~ 70 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFE-KGV-ISVPSVFIDGELV 70 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhh-cce-eecceEEEcCeEE
Confidence 789999999999999999999998655555554332222223 233 2689888776543
No 176
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=93.57 E-value=0.47 Score=23.77 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=29.1
Q ss_pred eEEEeeCCChhHHHHHHHHHh----cC--CceEEEEecCCC-CcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL----KG--VEYEYVEVNIHN-KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~----~g--i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.+.. .. -.+....++... ....+.+..+- ..+|+++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEE
Confidence 456778899999977533322 11 123333344332 24555544444 4699886
No 177
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.56 E-value=0.18 Score=30.26 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=21.6
Q ss_pred eEEEeeCCChhHHHHHHHHHh---cC-CceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKL---KG-VEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~---~g-i~~~~~~v 34 (75)
+++|+.+.||||++..-.+.. .| |.+....+
T Consensus 121 I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 677888999999999766542 33 66555543
No 178
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=93.55 E-value=0.13 Score=26.40 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=13.8
Q ss_pred eEEEeeCCChhHHHHHHHHH
Q 038935 4 VKLLGTWPSSFCYRVIWALK 23 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~ 23 (75)
+.+|+.++||+|++..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 55677899999998865554
No 179
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.54 E-value=0.24 Score=29.33 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=21.8
Q ss_pred ceEEEeeCCChhHHHHHHHHHhc---CCceEEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLK---GVEYEYV 32 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~---gi~~~~~ 32 (75)
.+++|+.+.||||++..-.+... |+.+...
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 36788999999999997666653 4554443
No 180
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.48 E-value=0.48 Score=25.45 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=28.2
Q ss_pred CCChhHHHHH----HHHHhcCCceEEEEecCC------CCcHHHhh--hCCCCCcccEEE--eCCEEeecHH
Q 038935 10 WPSSFCYRVI----WALKLKGVEYEYVEVNIH------NKSELLLQ--LNPVHKQVPVLV--HGGRPVAESM 67 (75)
Q Consensus 10 ~~~p~~~~~~----~~l~~~gi~~~~~~v~~~------~~~~~~~~--~~p~~~~vP~l~--~~~~~l~es~ 67 (75)
+|||.|.++. -++....-....+.+... +....|+. .... ..||+|. .++..|.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhh
Confidence 5899999886 444443333444444332 22234554 2334 4699998 3455565543
No 181
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.44 E-value=0.65 Score=24.98 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=34.8
Q ss_pred EEEeeCCChhHHHHHH-HHHh------cCCceEEEEecCCCCcHH---Hhh----hCCCCCcccEEE---eCCEEeecH
Q 038935 5 KLLGTWPSSFCYRVIW-ALKL------KGVEYEYVEVNIHNKSEL---LLQ----LNPVHKQVPVLV---HGGRPVAES 66 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~-~l~~------~gi~~~~~~v~~~~~~~~---~~~----~~p~~~~vP~l~---~~~~~l~es 66 (75)
..++.++|++|++..- .+.. .+-.|..+.++.++..+- +.+ .... +..|+++ .+|..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 3477789999998742 2222 233677777776542211 211 2334 3589886 356666544
No 182
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=93.33 E-value=0.55 Score=23.84 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=30.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhc----CCceEEEEecCCC-CcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK----GVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.++.. +-.+....++.+. ...++.+.... ..+|++.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEE
Confidence 4567889999999775444432 2123333344332 24455554455 4799886
No 183
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.29 E-value=0.85 Score=25.89 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=31.8
Q ss_pred EEEeeCCChhHHHHHHHHHhc---CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 5 KLLGTWPSSFCYRVIWALKLK---GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
..|+.++|+.|..+.-.|+.. --......|+.+.. +.....+- ..+|++. .+|..+
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v 148 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELI 148 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEE
Confidence 346778999999665444322 11234444444332 44455555 5799886 466544
No 184
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=93.05 E-value=0.67 Score=24.04 Aligned_cols=65 Identities=14% Similarity=0.301 Sum_probs=38.9
Q ss_pred EEeeCCChhHHHHHHHHHhcCC--ceEEEEecCCCCcHHHh---hh---CCCCCcccEEEeCCE-EeecHHHHHHhH
Q 038935 6 LLGTWPSSFCYRVIWALKLKGV--EYEYVEVNIHNKSELLL---QL---NPVHKQVPVLVHGGR-PVAESMVILEYI 73 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi--~~~~~~v~~~~~~~~~~---~~---~p~~~~vP~l~~~~~-~l~es~~I~~yl 73 (75)
|++...||.|....-.+...+- .++.+++.... ..++. .+ ... ..+-+ ..+|. ...++.|+.+-+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~ 74 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEP-DQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLL 74 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChh-hhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHH
Confidence 4677889999999888888775 35544442221 11211 11 122 23333 55665 999999998754
No 185
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=93.01 E-value=0.55 Score=22.96 Aligned_cols=52 Identities=10% Similarity=-0.032 Sum_probs=32.3
Q ss_pred eEEEeeCCChhHHHHHHHHHhc------CCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK------GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~------gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+.+|+.++|+.|+...-.+... +-.+....++... ..++.+.... ..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 5667888999999887666442 2334444555433 4555555455 4699885
No 186
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.96 E-value=0.13 Score=27.46 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=24.7
Q ss_pred eCCChhHHHHHHH-------HHhcCCceEEEEecCC--CCcHHHhhhCCCCCcccEEEeCCE
Q 038935 9 TWPSSFCYRVIWA-------LKLKGVEYEYVEVNIH--NKSELLLQLNPVHKQVPVLVHGGR 61 (75)
Q Consensus 9 ~~~~p~~~~~~~~-------l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~~~~ 61 (75)
..+||.|.+..-. +..+|+. .+-|..+ ....+|.+..+. ..|++.+.+.
T Consensus 33 ~~~cp~C~~~~~~l~~~~~~~~~~~~~--vv~is~d~~~~~~~~~~~~~~--~~~~l~D~~~ 90 (140)
T cd03017 33 KDDTPGCTKEACDFRDLYEEFKALGAV--VIGVSPDSVESHAKFAEKYGL--PFPLLSDPDG 90 (140)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHhCC--CceEEECCcc
Confidence 3578988753222 2334554 4444443 233445555544 3676665443
No 187
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=91.95 E-value=1.1 Score=23.97 Aligned_cols=46 Identities=9% Similarity=0.224 Sum_probs=25.8
Q ss_pred cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe-----ecHHHHHHhHh
Q 038935 25 KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV-----AESMVILEYIE 74 (75)
Q Consensus 25 ~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l-----~es~~I~~yl~ 74 (75)
.++.+-.++++ + .+++.+...- ..+|+|. .+|..+ .....|..||.
T Consensus 64 ~~v~~~kVD~d--~-~~~La~~~~I-~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~ 116 (120)
T cd03065 64 KGIGFGLVDSK--K-DAKVAKKLGL-DEEDSIYVFKDDEVIEYDGEFAADTLVEFLL 116 (120)
T ss_pred CCCEEEEEeCC--C-CHHHHHHcCC-ccccEEEEEECCEEEEeeCCCCHHHHHHHHH
Confidence 45555555555 2 3566655555 4799996 466532 23445555554
No 188
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=1.3 Score=29.30 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=43.2
Q ss_pred eEEEeeCCChhHHHH-------HHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE------eecHHH
Q 038935 4 VKLLGTWPSSFCYRV-------IWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP------VAESMV 68 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~-------~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~------l~es~~ 68 (75)
+.-|+.+||++|.+. --.|.+.|-+.....||-... .++...... ...|+|. .+|.. -.+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 456888999999854 345555555666666664432 444444444 3589886 35542 456778
Q ss_pred HHHhHh
Q 038935 69 ILEYIE 74 (75)
Q Consensus 69 I~~yl~ 74 (75)
|+.||-
T Consensus 124 Iv~wl~ 129 (493)
T KOG0190|consen 124 IVKWLK 129 (493)
T ss_pred HHHHHH
Confidence 888873
No 189
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=91.89 E-value=0.53 Score=25.30 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=26.9
Q ss_pred CChhHHHHHHHHH-------hcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCC
Q 038935 11 PSSFCYRVIWALK-------LKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGG 60 (75)
Q Consensus 11 ~~p~~~~~~~~l~-------~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~ 60 (75)
+||.|..-.-.|+ .+|+.+-.+..+.+....+|.+..+. ..|++.|.+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~--~~~~~~D~~ 94 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGI--NFPVLSDPD 94 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTT--TSEEEEETT
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCC--CceEEechH
Confidence 8999996553332 34566555555544334555555432 467766644
No 190
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=91.60 E-value=0.41 Score=23.30 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=24.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhc------CCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK------GVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~------gi~~~~~~v~~~ 37 (75)
+.+|....||+|....-.+... ++.+..+.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 4678889999999887766653 456666665544
No 191
>PLN02309 5'-adenylylsulfate reductase
Probab=91.52 E-value=1.8 Score=28.40 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=30.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhh-hCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQ-LNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~-~~p~~~~vP~l~ 57 (75)
+..|+.++|++|+...-.++.. +-.+....++-+....++.. .... ..+|++.
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-~~~PTil 427 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTIL 427 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC-ceeeEEE
Confidence 5678889999999766444332 32344445554422334432 2344 4689886
No 192
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=91.39 E-value=1.1 Score=22.76 Aligned_cols=52 Identities=8% Similarity=-0.038 Sum_probs=29.4
Q ss_pred eEEEeeCCChhHHHHHHHHHh----c---CCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL----K---GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~----~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++||.|++..-.+.. . +..+....++... .+++.+...- ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~I-~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-YSSIASEFGV-RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-CHhHHhhcCC-ccccEEE
Confidence 445777899999966544432 2 3334444444332 3444444444 4699886
No 193
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=91.24 E-value=1.3 Score=23.20 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=29.3
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCc-------eEEEEecCC-CCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVE-------YEYVEVNIH-NKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~-------~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|....-.++...-. +....++-. +...++.+.... +.+|++.
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i-~~~Pt~~ 83 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV-TGYPTLR 83 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC-CCCCEEE
Confidence 4467789999999775554432211 222233322 223455554445 4689886
No 194
>PTZ00102 disulphide isomerase; Provisional
Probab=91.20 E-value=2.7 Score=27.01 Aligned_cols=69 Identities=22% Similarity=0.189 Sum_probs=38.3
Q ss_pred eEEEeeCCChhHHHHHHHH-------HhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe-----ecHHHH
Q 038935 4 VKLLGTWPSSFCYRVIWAL-------KLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV-----AESMVI 69 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l-----~es~~I 69 (75)
+..|+.+||++|++..-.+ +..+-++....++-.. ..++.+.... ..+|++. .+|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-EMELAQEFGV-RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-CHHHHHhcCC-CcccEEEEEECCceEEecCCCCHHHH
Confidence 4568889999999775322 2223345555555433 3445444444 3699886 444321 245556
Q ss_pred HHhHh
Q 038935 70 LEYIE 74 (75)
Q Consensus 70 ~~yl~ 74 (75)
.+|+.
T Consensus 131 ~~~l~ 135 (477)
T PTZ00102 131 VSWIK 135 (477)
T ss_pred HHHHH
Confidence 66654
No 195
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=1.6 Score=24.42 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=36.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCC----ceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGV----EYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
+.-|+..||+.|+.+.=.|++.-- .++...++.++ ..++.....- +.+|+++ .+|...
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~-~~ela~~Y~I-~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE-HPELAEDYEI-SAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc-ccchHhhcce-eeeeEEEEEECCEEe
Confidence 345888999999988766666533 34455555543 4455545555 5799886 566443
No 196
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=90.98 E-value=2.8 Score=26.66 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=38.2
Q ss_pred eEEEeeCCChhHHHHHHHHH-------hcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE-------eecHH
Q 038935 4 VKLLGTWPSSFCYRVIWALK-------LKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP-------VAESM 67 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~-------~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~-------l~es~ 67 (75)
+..|+.+||+.|.+..-.+. ..+-.+....|+-.. ..++.+..+- ..+|++. .+|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-EKDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-cHHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 45688899999998753332 223224444555433 3455544444 4689886 34432 12455
Q ss_pred HHHHhHh
Q 038935 68 VILEYIE 74 (75)
Q Consensus 68 ~I~~yl~ 74 (75)
.|.+|+.
T Consensus 100 ~l~~~i~ 106 (462)
T TIGR01130 100 GIVKYMK 106 (462)
T ss_pred HHHHHHH
Confidence 5666553
No 197
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=90.94 E-value=1.2 Score=22.25 Aligned_cols=51 Identities=6% Similarity=-0.069 Sum_probs=28.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcC------CceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKG------VEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~g------i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.++... ..+....++.... +....... ..+|++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~-~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVPSEFVV-DGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhhhhccC-CCCCEEE
Confidence 45678899999998765554432 1244444554332 22222222 3689876
No 198
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=90.76 E-value=0.91 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=25.4
Q ss_pred ceEEEeeCCChhHHHH----HHHHHhcCCceEEEEecC
Q 038935 3 EVKLLGTWPSSFCYRV----IWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v~~ 36 (75)
++.+|+...||||.-. +-+++..+++.+.+.+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 5789999999999865 344456778877777654
No 199
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=90.34 E-value=1.4 Score=22.03 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=28.4
Q ss_pred eEEEeeCCChhHHHHHHHHHh----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+.+++.++|+.|+...-.+.. ..-.+....++.++ ..++.+...- ..+|++.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~i-~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV-HQSLAQQYGV-RGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc-hHHHHHHCCC-CccCEEE
Confidence 446777899999987544433 11123334444433 3444433334 3699875
No 200
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.15 E-value=2.5 Score=24.85 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=33.0
Q ss_pred eEEEeeCCChhHHH----HHHHHHhcCCceEEEEecCC------C--CcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYR----VIWALKLKGVEYEYVEVNIH------N--KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~----~~~~l~~~gi~~~~~~v~~~------~--~~~~~~~~~p~~~~vP~l~ 57 (75)
+.+++.+.||+|+. ++.+.+..|++...+.+|-. + ......+.... ..+|++.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-CcCCEEE
Confidence 45677789999984 45666677888777766632 0 12333333333 4799886
No 201
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=90.15 E-value=3.2 Score=27.96 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=28.7
Q ss_pred EEEeeCCChhHHHHHHH-H------HhcCCceEEEEecCCC---CcHHHhhhCCCCCcccEEE
Q 038935 5 KLLGTWPSSFCYRVIWA-L------KLKGVEYEYVEVNIHN---KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~-l------~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~ 57 (75)
.-++.+||+.|+...-. + ++.+ .+....+|..+ ...++.+.... ..+|++.
T Consensus 479 VdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v-~g~Pt~~ 539 (571)
T PRK00293 479 LDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV-LGLPTIL 539 (571)
T ss_pred EEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC-CCCCEEE
Confidence 34778999999976432 1 1111 34444555442 23455555555 3699886
No 202
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.09 E-value=0.29 Score=25.41 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=27.7
Q ss_pred eCCChhHHHHHHHHHh-----cCCceEEEEecCCC--CcHHHhhhCCCCCcccEEEeCCEE
Q 038935 9 TWPSSFCYRVIWALKL-----KGVEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVHGGRP 62 (75)
Q Consensus 9 ~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~~~~ 62 (75)
..+||.|....-.|.+ +.-.+...-|+.+. ...++.+..+. ..|++.+.+..
T Consensus 35 ~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~--~~~~~~D~~~~ 93 (124)
T PF00578_consen 35 TAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL--PFPVLSDPDGE 93 (124)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC--SSEEEEETTSH
T ss_pred ccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc--ccccccCcchH
Confidence 3489999866544433 22234444555432 33445544443 47888775433
No 203
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=90.07 E-value=0.61 Score=22.00 Aligned_cols=32 Identities=13% Similarity=-0.100 Sum_probs=21.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEec
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVN 35 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 35 (75)
.++|+...-.-+..++-+|+..||++...+-.
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 47888887788999999999999999876444
No 204
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=89.68 E-value=1.6 Score=23.30 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=32.1
Q ss_pred EeeCCChhHHHHHHHHHhcCCc----eEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 7 LGTWPSSFCYRVIWALKLKGVE----YEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
|+..|||.|...--.|++.--. .....|+.+ ..+++.+.... ...|+.+ -+|.+
T Consensus 21 F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD-ev~dva~~y~I-~amPtfvffkngkh 80 (114)
T cd02986 21 FGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD-KVPVYTQYFDI-SYIPSTIFFFNGQH 80 (114)
T ss_pred EeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc-ccHHHHHhcCc-eeCcEEEEEECCcE
Confidence 6778999999886666554322 223334433 35666665555 3578776 45543
No 205
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=89.32 E-value=2.4 Score=23.42 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=44.3
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC-CCcHHHhhhCCCCCccc---EEEeCCEEeecHHHHHHhH
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH-NKSELLLQLNPVHKQVP---VLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP---~l~~~~~~l~es~~I~~yl 73 (75)
.+++++..-|+.|..-.-+|..+.-.-..+..+.. +....+++..+....-+ .++.+|..+.+|.|+++-+
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~ 83 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRIL 83 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHH
Confidence 46788888999999777777776655444444433 23444444444321112 2346889999999998754
No 206
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=1.8 Score=26.91 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=37.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhc----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
+..|+.++|+.|....-.|+.. +=.|....|+.+. .+..-...+- ..+|+++ .||..+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~-~p~vAaqfgi-qsIPtV~af~dGqpV 110 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA-EPMVAAQFGV-QSIPTVYAFKDGQPV 110 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc-chhHHHHhCc-CcCCeEEEeeCCcCc
Confidence 4567778999999876665543 3456666666543 4555556665 5899886 566544
No 207
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=88.65 E-value=0.67 Score=24.78 Aligned_cols=22 Identities=9% Similarity=0.233 Sum_probs=16.6
Q ss_pred ceEEEeeCCChhHHHHHHHHHh
Q 038935 3 EVKLLGTWPSSFCYRVIWALKL 24 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~ 24 (75)
+++.|....||+|++..-.+..
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEECCCChhHHHhhHHHHH
Confidence 4677888899999988655443
No 208
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=88.30 E-value=4.1 Score=26.91 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=28.3
Q ss_pred eEEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHh-hhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLL-QLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|+...-.+++. +-......++.+....++. +.... ..+|++.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I-~~~PTii 433 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTIL 433 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC-CccceEE
Confidence 4468889999999776544332 2122333344333222332 23334 4689886
No 209
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=88.28 E-value=0.81 Score=24.90 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=5.4
Q ss_pred CCChhHHH
Q 038935 10 WPSSFCYR 17 (75)
Q Consensus 10 ~~~p~~~~ 17 (75)
.+||.|..
T Consensus 41 ~~~p~C~~ 48 (154)
T PRK09437 41 AMTPGCTV 48 (154)
T ss_pred CCCCchHH
Confidence 46887854
No 210
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=88.21 E-value=1.5 Score=24.60 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=22.2
Q ss_pred eEEEeeCCChhHHHHH----HHHHhcCCceEEEEec
Q 038935 4 VKLLGTWPSSFCYRVI----WALKLKGVEYEYVEVN 35 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~----~~l~~~gi~~~~~~v~ 35 (75)
+++|+...||||.... -+....+++++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 4688889999999653 3444557777776653
No 211
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=88.17 E-value=1.9 Score=24.89 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=20.8
Q ss_pred eEEEeeCCChhHHHH----HHHHHhcCCceEEEEec
Q 038935 4 VKLLGTWPSSFCYRV----IWALKLKGVEYEYVEVN 35 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v~ 35 (75)
+..|...+||+|++- +-+.+..|+++--+.++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 445777899999976 44444557665555544
No 212
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=87.96 E-value=0.73 Score=21.94 Aligned_cols=21 Identities=48% Similarity=0.468 Sum_probs=16.8
Q ss_pred eEEEee----CCChhHHHHHHHHHh
Q 038935 4 VKLLGT----WPSSFCYRVIWALKL 24 (75)
Q Consensus 4 ~~ly~~----~~~p~~~~~~~~l~~ 24 (75)
++||.+ +.+.||+++-.+|++
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 677766 567899999998875
No 213
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=87.85 E-value=2.8 Score=23.78 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=17.0
Q ss_pred EEeeCCChhHHHHHHHH---HhcCCceEEEEecC
Q 038935 6 LLGTWPSSFCYRVIWAL---KLKGVEYEYVEVNI 36 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l---~~~gi~~~~~~v~~ 36 (75)
.|...+||.|++-.-.| ..+|+.+ +-|+.
T Consensus 74 ~FwatwC~~C~~e~p~l~~l~~~~~~v--i~v~~ 105 (185)
T PRK15412 74 NVWATWCPTCRAEHQYLNQLSAQGIRV--VGMNY 105 (185)
T ss_pred EEECCCCHHHHHHHHHHHHHHHcCCEE--EEEEC
Confidence 35567999998754333 3345544 44543
No 214
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=86.98 E-value=5.1 Score=24.42 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=28.4
Q ss_pred eEEEeeCCChhHHHHHHHH----HhcCCceEEEEecCCC--------CcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWAL----KLKGVEYEYVEVNIHN--------KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l----~~~gi~~~~~~v~~~~--------~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++||+|+...-.| +..|+.+..+.++... ......+..+. ..+|++.
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV-~~vPtl~ 234 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI-RTVPAVF 234 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC-CcCCeEE
Confidence 3456668999999765444 3446554444444221 01223333344 4699885
No 215
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=86.78 E-value=1.5 Score=25.32 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=29.4
Q ss_pred EEEeeCCChhHHHHHHHHHhc-----CCceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 5 KLLGTWPSSFCYRVIWALKLK-----GVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
..++.++|+.|..+.-.|... ++.|- .|+.+. .....+- ..+|++. .+|..+
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFv--kI~ad~----~~~~~~i-~~lPTlliyk~G~~v 165 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFV--KIISTQ----CIPNYPD-KNLPTILVYRNGDIV 165 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEE--EEEhHH----hHhhCCC-CCCCEEEEEECCEEE
Confidence 346678999999775544433 34343 333222 1233455 4799987 466543
No 216
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=86.46 E-value=1.6 Score=24.66 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=22.6
Q ss_pred eEEEeeCCChhHHHHH----HHHHhc----CCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVI----WALKLK----GVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~----~~l~~~----gi~~~~~~v~~~ 37 (75)
+++|+...||||.-.. -+.+.. +++++.+.+.+.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 4688889999999554 334444 566676666443
No 217
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=86.28 E-value=3.4 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=18.4
Q ss_pred EEeeCCChhHHHHHHHHHh-------cCCceEEEEecCC
Q 038935 6 LLGTWPSSFCYRVIWALKL-------KGVEYEYVEVNIH 37 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~-------~gi~~~~~~v~~~ 37 (75)
.++.++||.|++..-.|.. ++-.++.+.++.+
T Consensus 24 ~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d 62 (131)
T cd03009 24 YFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD 62 (131)
T ss_pred EEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 3555799999976554432 2224555555544
No 218
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=85.92 E-value=1.4 Score=23.68 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=8.0
Q ss_pred eCCChhHHHHH
Q 038935 9 TWPSSFCYRVI 19 (75)
Q Consensus 9 ~~~~p~~~~~~ 19 (75)
..+||.|.+..
T Consensus 38 ~~~c~~C~~~~ 48 (149)
T cd03018 38 LAFTPVCTKEL 48 (149)
T ss_pred CCCCccHHHHH
Confidence 46899998554
No 219
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.69 E-value=2.7 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=18.5
Q ss_pred ceEEEeeCCChhHH----HHHHHHHhcCCce
Q 038935 3 EVKLLGTWPSSFCY----RVIWALKLKGVEY 29 (75)
Q Consensus 3 ~~~ly~~~~~p~~~----~~~~~l~~~gi~~ 29 (75)
++.+|+-.-||+|. +.+-++...+-.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 46778888999998 4455566666333
No 220
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=85.68 E-value=1.5 Score=24.24 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=21.7
Q ss_pred ceEEEeeCCChhHHHHHHHHHhc------CCceEEEEec
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLK------GVEYEYVEVN 35 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~------gi~~~~~~v~ 35 (75)
++..|+...||+|.+..-.+... ++.++.+.+.
T Consensus 18 ~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 18 EVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred EEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 46678888999999876555322 4556555544
No 221
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=85.37 E-value=1.4 Score=23.28 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCChhHHHHHHHHH-------hcCCceEEEEecCCC--CcHHHhhhCCCCCcccEEEeCC
Q 038935 10 WPSSFCYRVIWALK-------LKGVEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVHGG 60 (75)
Q Consensus 10 ~~~p~~~~~~~~l~-------~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~~ 60 (75)
.+||.|..-.-.|. ..|+. .+-|..+. ....|.+..+. ...|++.+.+
T Consensus 33 ~~c~~C~~~~~~l~~~~~~~~~~~~~--~i~is~d~~~~~~~~~~~~~~-~~~~~l~D~~ 89 (140)
T cd02971 33 DFTPVCTTELCAFRDLAEEFAKGGAE--VLGVSVDSPFSHKAWAEKEGG-LNFPLLSDPD 89 (140)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCE--EEEEeCCCHHHHHHHHhcccC-CCceEEECCC
Confidence 57888876433332 23444 44444332 23445544422 2577776544
No 222
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=85.12 E-value=1.2 Score=23.09 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=12.7
Q ss_pred EEEeeCCChhHHHHHHHHH
Q 038935 5 KLLGTWPSSFCYRVIWALK 23 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~ 23 (75)
..|+.++||.|+...-.|.
T Consensus 25 l~F~~~~C~~C~~~~~~l~ 43 (123)
T cd03011 25 VYFWATWCPVCRFTSPTVN 43 (123)
T ss_pred EEEECCcChhhhhhChHHH
Confidence 4466788999997643333
No 223
>PRK09266 hypothetical protein; Provisional
Probab=85.03 E-value=2.3 Score=25.49 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=35.6
Q ss_pred HHHHHhcCCceEEEEecCCC--CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 19 IWALKLKGVEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
.-.++..|+++++..++..+ ..++..-.|...|-+|+...|+..+.+...+.+.|
T Consensus 198 l~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l 254 (266)
T PRK09266 198 QRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELL 254 (266)
T ss_pred HHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHH
Confidence 33556779999999988763 33343333432268999998887776545555544
No 224
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=3.5 Score=21.65 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=38.6
Q ss_pred CcceEEEeeCCChhH------HHHHHHHHhcCCceEEEEecCCCC---------cHHHhhhCCCCCcccEEEeCCEE
Q 038935 1 MEEVKLLGTWPSSFC------YRVIWALKLKGVEYEYVEVNIHNK---------SELLLQLNPVHKQVPVLVHGGRP 62 (75)
Q Consensus 1 M~~~~ly~~~~~p~~------~~~~~~l~~~gi~~~~~~v~~~~~---------~~~~~~~~p~~~~vP~l~~~~~~ 62 (75)
|..+++|....++.. +.+..+|+...|+|+.+++..... .++.+..++. -.-|-++.++..
T Consensus 1 m~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~Gn-plPPqifn~d~Y 76 (108)
T KOG4023|consen 1 MMVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGN-PLPPQIFNGDQY 76 (108)
T ss_pred CCceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCC-CCCcccccCccc
Confidence 445888888766653 356788898999999998876532 2222333444 245677765544
No 225
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=84.79 E-value=1.6 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=20.8
Q ss_pred ceEEEeeCCChhHHHHHHHH----Hhc----CCceEEEEec
Q 038935 3 EVKLLGTWPSSFCYRVIWAL----KLK----GVEYEYVEVN 35 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l----~~~----gi~~~~~~v~ 35 (75)
.++.|....||+|.+..-.+ ++. .+.+..+.+.
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 47789999999999875443 332 3555555553
No 226
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=84.50 E-value=2.3 Score=18.15 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.2
Q ss_pred CcccEEEeCCEEeecHHHHHHhHhC
Q 038935 51 KQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 51 ~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
|.+|....++..+....++.+|+++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLEQ 49 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHhC
Confidence 5788877788899999999999874
No 227
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=84.47 E-value=1.7 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=11.0
Q ss_pred EEeeCCChhHHHHHHHH
Q 038935 6 LLGTWPSSFCYRVIWAL 22 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l 22 (75)
.|...+||.|.+-.-.|
T Consensus 29 ~F~a~~C~~C~~~~p~l 45 (126)
T cd03012 29 DFWTYCCINCLHTLPYL 45 (126)
T ss_pred EEECCCCccHHHHHHHH
Confidence 34557899998754333
No 228
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=84.46 E-value=2.7 Score=20.82 Aligned_cols=21 Identities=10% Similarity=-0.112 Sum_probs=13.9
Q ss_pred eEEEeeCCChhHHHHHHHHHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKL 24 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~ 24 (75)
+..|+..+||.|.+..-.+..
T Consensus 23 ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 23 LVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEEeecccChhHHHHhHHHHH
Confidence 345666799999876544444
No 229
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=84.20 E-value=3.9 Score=20.78 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=25.1
Q ss_pred EEeeCCChhHHHHHHHHHhcC----CceEEEEecCC--CCcHHHhhhCCCCCcccEEE
Q 038935 6 LLGTWPSSFCYRVIWALKLKG----VEYEYVEVNIH--NKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~g----i~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~ 57 (75)
.|..++||.|....-.++... -.+..+.+... +...++.+..+. ...|++.
T Consensus 27 ~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~-~~~p~~~ 83 (114)
T cd02967 27 FFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGL-EAFPYVL 83 (114)
T ss_pred EEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCC-CCCcEEe
Confidence 355678999997654443321 12333334322 123345544444 2467664
No 230
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=83.96 E-value=5.5 Score=22.10 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=13.6
Q ss_pred EEeeCCChhHHHHHHHHHh
Q 038935 6 LLGTWPSSFCYRVIWALKL 24 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~ 24 (75)
.|..++||.|.+-.-.|..
T Consensus 31 ~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 31 FFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEECCCChhHHHHHHHHHH
Confidence 3555789999987766644
No 231
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.31 E-value=2 Score=21.31 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHhcCCceEEEE
Q 038935 12 SSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
-+|++|+.-.|+..|++|+-.+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeec
Confidence 4799999999999999999764
No 232
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=82.84 E-value=4.1 Score=22.83 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=21.3
Q ss_pred eEEEeeCCChhHHHHHHH----HHhc--CCceEEEEec
Q 038935 4 VKLLGTWPSSFCYRVIWA----LKLK--GVEYEYVEVN 35 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~----l~~~--gi~~~~~~v~ 35 (75)
+.+|....||+|....-. .+.. +++++.+...
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~ 40 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGG 40 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecc
Confidence 788999999999855433 3343 6666665443
No 233
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=82.57 E-value=1.5 Score=23.97 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=27.2
Q ss_pred eEEEeeCCChhHHHHHHH-HHhcC------CceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWA-LKLKG------VEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~-l~~~g------i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..++.++||+|.+..-. +.... -.|-.+.++.+...... ..++. -+|+++
T Consensus 27 mv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~-~~~g~--~vPtiv 84 (130)
T cd02960 27 MVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNL-SPDGQ--YVPRIM 84 (130)
T ss_pred EEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCc-CccCc--ccCeEE
Confidence 345778999999987543 32222 24655555543211111 12333 489886
No 234
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.46 E-value=4 Score=22.86 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.-+.+++++..|++.|++|+.+.+...
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saH 38 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAH 38 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence 347899999999999999998766643
No 235
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=82.46 E-value=5.3 Score=21.65 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=31.3
Q ss_pred CcceEEEeeCCC------hh---HH-----HHHHHHHhcCCceEEEEecCCC-------CcHHHhhhCCCCCcccEEEeC
Q 038935 1 MEEVKLLGTWPS------SF---CY-----RVIWALKLKGVEYEYVEVNIHN-------KSELLLQLNPVHKQVPVLVHG 59 (75)
Q Consensus 1 M~~~~ly~~~~~------p~---~~-----~~~~~l~~~gi~~~~~~v~~~~-------~~~~~~~~~p~~~~vP~l~~~ 59 (75)
|+++.+|--..| +. -. .+.-.|+.+|++.+..++..+. .-.++++..+. ..+|+...|
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~-e~LPitlVd 79 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGA-EALPITLVD 79 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G-GG-SEEEET
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCc-ccCCEEEEC
Confidence 778888877542 11 11 2233457788888877766542 12334444555 479999877
Q ss_pred CEEe
Q 038935 60 GRPV 63 (75)
Q Consensus 60 ~~~l 63 (75)
|..+
T Consensus 80 Geiv 83 (123)
T PF06953_consen 80 GEIV 83 (123)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 7543
No 236
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=82.34 E-value=1.8 Score=21.11 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=29.8
Q ss_pred eEEEeeCCChhHHHHHHHH-Hh------cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWAL-KL------KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l-~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..++.++|+.|++..-.+ .. .+-.|....++..+...... .... | +|.+.
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~-~-~P~~~ 78 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQ-G-YPTFF 78 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHC-S-SSEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCc-c-CCEEE
Confidence 4567889999999875443 22 23347777777654333332 1114 3 78775
No 237
>PTZ00102 disulphide isomerase; Provisional
Probab=82.30 E-value=3.7 Score=26.43 Aligned_cols=21 Identities=5% Similarity=-0.178 Sum_probs=15.9
Q ss_pred eEEEeeCCChhHHHHHHHHHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKL 24 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~ 24 (75)
+..|+.+||+.|+...-.++.
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~ 399 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNE 399 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 445777999999988766654
No 238
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=82.17 E-value=4.6 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=22.4
Q ss_pred EeeCCChhHHH-------HHHHHHhcCCceEEEEecCCC
Q 038935 7 LGTWPSSFCYR-------VIWALKLKGVEYEYVEVNIHN 38 (75)
Q Consensus 7 y~~~~~p~~~~-------~~~~l~~~gi~~~~~~v~~~~ 38 (75)
|+..+||.|+. .--.++..+-+++.+.|+.+.
T Consensus 40 FsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 40 FSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 44568998883 334455566789999998774
No 239
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=80.74 E-value=0.82 Score=24.58 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEe---CCEEeecHHHHHHhHh
Q 038935 14 FCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVH---GGRPVAESMVILEYIE 74 (75)
Q Consensus 14 ~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~---~~~~l~es~~I~~yl~ 74 (75)
|..-++-+....|++.+....+... ...+-....|++|.+|+++| .=...-|...|+.||+
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInyle 88 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLE 88 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHH
Confidence 3456777888889888776655332 11111123445578998875 2356677888888886
No 240
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=80.04 E-value=5.8 Score=19.74 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=30.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCC----ceEEEEecCCCCcHHHhhhCCCCC--cccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGV----EYEYVEVNIHNKSELLLQLNPVHK--QVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~--~vP~l~ 57 (75)
+.+|+.++|+.|...+-.+.+..- .+....++.++ .+++...... . .+|++.
T Consensus 16 ~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~-~~~~~~~~~i-~~~~~P~~~ 73 (103)
T cd02982 16 LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD-FGRHLEYFGL-KEEDLPVIA 73 (103)
T ss_pred EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh-hHHHHHHcCC-ChhhCCEEE
Confidence 345666789888888776665322 24444555433 3344444333 3 699886
No 241
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=79.33 E-value=5.6 Score=19.14 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=27.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~ 36 (75)
--+..|+....+.++.-.|+..|++++..++..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 456777888899999999999999999886653
No 242
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=78.99 E-value=3.6 Score=22.94 Aligned_cols=14 Identities=21% Similarity=0.036 Sum_probs=8.8
Q ss_pred eCCChhHHHHHHHH
Q 038935 9 TWPSSFCYRVIWAL 22 (75)
Q Consensus 9 ~~~~p~~~~~~~~l 22 (75)
..+||.|....-.|
T Consensus 39 ~~~c~~C~~~l~~l 52 (173)
T cd03015 39 LDFTFVCPTEIIAF 52 (173)
T ss_pred CCCCCcCHHHHHHH
Confidence 46788888644333
No 243
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=78.70 E-value=6.4 Score=22.45 Aligned_cols=28 Identities=4% Similarity=0.167 Sum_probs=16.2
Q ss_pred EEEeeCCChhHHHHHHHH----HhcCCceEEE
Q 038935 5 KLLGTWPSSFCYRVIWAL----KLKGVEYEYV 32 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l----~~~gi~~~~~ 32 (75)
..|..++||.|.+..-.+ +..|+.+..+
T Consensus 79 l~F~atwCp~C~~~lp~l~~~~~~~~~~vv~I 110 (189)
T TIGR02661 79 LMFTAPSCPVCDKLFPIIKSIARAEETDVVMI 110 (189)
T ss_pred EEEECCCChhHHHHHHHHHHHHHhcCCcEEEE
Confidence 346678999998653322 3345544433
No 244
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=78.40 E-value=11 Score=22.17 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=20.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEec
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVN 35 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 35 (75)
+-||....|+.|......+...+-+++..-|.
T Consensus 112 lalFvkd~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 112 LALFVKDDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred EEEEeCCCChHHHHHHHHHhcCCCceeEEEec
Confidence 34566677777776655555566666666655
No 245
>PRK13947 shikimate kinase; Provisional
Probab=78.29 E-value=5.3 Score=21.95 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=28.9
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
|.++.|.+.++|+-+.-.+.+.+..|.+|-..+
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 778899999999999999999999999886543
No 246
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=77.85 E-value=4.1 Score=22.38 Aligned_cols=15 Identities=7% Similarity=-0.179 Sum_probs=10.8
Q ss_pred EEEeeCCChhHHHHH
Q 038935 5 KLLGTWPSSFCYRVI 19 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~ 19 (75)
..+..++||.|+...
T Consensus 66 l~f~a~~C~~C~~~~ 80 (173)
T PRK03147 66 LNFWGTWCKPCEKEM 80 (173)
T ss_pred EEEECCcCHHHHHHH
Confidence 345578999998754
No 247
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=77.75 E-value=2.3 Score=25.76 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=16.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhc
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK 25 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~ 25 (75)
+..-++.+||+|..-||.|-..
T Consensus 62 v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred EEEEecccCccchhhHHHHHHH
Confidence 3456678999999999887654
No 248
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=77.44 E-value=8.9 Score=21.68 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.-|.++++...|+..|++|+.......
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaH 36 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAH 36 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcc
Confidence 447899999999999999998877654
No 249
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=76.96 E-value=7.6 Score=23.67 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=24.1
Q ss_pred eEEEeeCCChhHHHH----HHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRV----IWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v~~~ 37 (75)
+.+++...||+|++. +.+-+..|++...+.+|-.
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 456677889999954 4566777888777666643
No 250
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=76.83 E-value=7.8 Score=23.52 Aligned_cols=33 Identities=9% Similarity=-0.135 Sum_probs=24.1
Q ss_pred eEEEeeCCChhHHH----HHHHHHhcCCceEEEEecC
Q 038935 4 VKLLGTWPSSFCYR----VIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 4 ~~ly~~~~~p~~~~----~~~~l~~~gi~~~~~~v~~ 36 (75)
+.+|+...||+|++ ++.+-+..|++.-.+.+|-
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 45666788999995 4667777888877666653
No 251
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=75.99 E-value=11 Score=21.02 Aligned_cols=18 Identities=11% Similarity=-0.249 Sum_probs=12.4
Q ss_pred EEeeCCChhHHHHHHHHH
Q 038935 6 LLGTWPSSFCYRVIWALK 23 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~ 23 (75)
.|+.++||.|.+..-.++
T Consensus 69 ~F~a~wC~~C~~~~p~l~ 86 (173)
T TIGR00385 69 NVWASWCPPCRAEHPYLN 86 (173)
T ss_pred EEECCcCHHHHHHHHHHH
Confidence 455689999997654443
No 252
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=74.68 E-value=4.4 Score=19.54 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.4
Q ss_pred cccEEEeCCEEeecHHHHHHhHhC
Q 038935 52 QVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 52 ~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
+=|++..+| ..+|-.+|.+||.+
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~ 37 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQ 37 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCT
T ss_pred hCceeCCcC-CEEcHHHHHHHHHc
Confidence 469988888 99999999999864
No 253
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=74.01 E-value=4.6 Score=21.56 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=21.8
Q ss_pred CCChhHHHHHHHHHhc---CCceEEEEecCCC--CcHHHhhhCCCCCcccEEEe
Q 038935 10 WPSSFCYRVIWALKLK---GVEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVH 58 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~---gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~ 58 (75)
.+||.|.+-.-.|.+. --.+..+-|+.+. ...+|.+.... ..+|++.+
T Consensus 37 ~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~-~~~~~l~D 89 (143)
T cd03014 37 IDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGV-DNVTTLSD 89 (143)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCC-CCceEeec
Confidence 3579888654333221 0134444555432 22344443333 24565554
No 254
>PTZ00056 glutathione peroxidase; Provisional
Probab=73.54 E-value=9.8 Score=22.01 Aligned_cols=12 Identities=0% Similarity=-0.144 Sum_probs=8.8
Q ss_pred EeeCCChhHHHH
Q 038935 7 LGTWPSSFCYRV 18 (75)
Q Consensus 7 y~~~~~p~~~~~ 18 (75)
+...+||.|.+-
T Consensus 46 fwAswC~~C~~e 57 (199)
T PTZ00056 46 NSASKCGLTKKH 57 (199)
T ss_pred EECCCCCChHHH
Confidence 455789999853
No 255
>PRK05568 flavodoxin; Provisional
Probab=73.49 E-value=12 Score=19.99 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=23.9
Q ss_pred CcceEEEeeCCChhHHHHHHHHH----hcCCceEEEEec
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALK----LKGVEYEYVEVN 35 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~----~~gi~~~~~~v~ 35 (75)
|.++.+.+++..++++++--.+. ..|++.+.+++.
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 77777777888888887654433 357777666554
No 256
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=72.29 E-value=6.8 Score=21.83 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=19.6
Q ss_pred eEEEeeCCChhHHHHHHHHH----hcCCceEEEEec
Q 038935 4 VKLLGTWPSSFCYRVIWALK----LKGVEYEYVEVN 35 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~----~~gi~~~~~~v~ 35 (75)
+..|..++||.|++-.-.|. ..|+.+-.+.++
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 44566789999997654443 335554444444
No 257
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=72.15 E-value=5.3 Score=23.59 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEe--ecHHHHHHhH
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPV--AESMVILEYI 73 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l--~es~~I~~yl 73 (75)
+.-.++..|+++++..+...+ ..++ |.--+.. |-+|+-..++..+ .....+.+.|
T Consensus 193 vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~-gv~pV~~i~~~~~~~~~~~~~~~~l 252 (256)
T cd00449 193 VIELAKELGIKVEERPISLDELYAADEVFLTGTAA-EVTPVTEIDGRGIGDGKPGPVTRKL 252 (256)
T ss_pred HHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccc-eEEEEEEECCeecCCCCCCHHHHHH
Confidence 334567789999999888653 2223 3322334 6789998887766 4456666655
No 258
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=71.61 E-value=7.3 Score=21.81 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhC
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLN 47 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~ 47 (75)
.-++...|-++...++|+-++.++....+++|+..+
T Consensus 79 THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~S 114 (146)
T PRK13015 79 THTSVAIRDALAALELPVIEVHISNVHAREAFRHHS 114 (146)
T ss_pred hhhHHHHHHHHHcCCCCEEEEEcCCccccccccccc
Confidence 346778999999999999999988777788887654
No 259
>PRK13949 shikimate kinase; Provisional
Probab=71.39 E-value=10 Score=21.27 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.8
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
|.++.|.+.++|+-+.-.+.+.+..|.+|-..+
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 777899999999999999999999998876544
No 260
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=71.12 E-value=7.7 Score=22.39 Aligned_cols=28 Identities=11% Similarity=-0.098 Sum_probs=25.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
+++-+.++|+-+..++.+.++.|+++--
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 7889999999999999999999999754
No 261
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=71.09 E-value=9 Score=21.36 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHhc--C-CceEEEEecCCC--CcHHHhhhCCCCCcccEEEe
Q 038935 10 WPSSFCYRVIWALKLK--G-VEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVH 58 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~--g-i~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~ 58 (75)
++||.|.+-.-.|.+. . -.++..-|+.+. ...+|.+..+. ...|++.|
T Consensus 55 ~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~-~~~~~lsD 107 (167)
T PRK00522 55 IDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGL-ENVITLSD 107 (167)
T ss_pred CCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCC-CCceEeec
Confidence 3488888644333331 0 134555555442 23445555444 23566665
No 262
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=71.00 E-value=7.7 Score=21.58 Aligned_cols=37 Identities=11% Similarity=-0.080 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCC
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNP 48 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p 48 (75)
.-.+...|-+|...++|+-++.++....+++|+..+-
T Consensus 77 THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~~S~ 113 (141)
T TIGR01088 77 THTSVALRDALAAVSLPVVEVHLSNVHAREEFRHHSY 113 (141)
T ss_pred hhhHHHHHHHHHcCCCCEEEEEcCCcccccccccccc
Confidence 3467789999999999999999887777888876543
No 263
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=70.84 E-value=8 Score=21.50 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhC
Q 038935 13 SFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLN 47 (75)
Q Consensus 13 p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~ 47 (75)
-.+...|-+|...++|+-++.++....+++|+..+
T Consensus 78 HtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~~S 112 (140)
T cd00466 78 HTSIALRDALAAVSIPVIEVHISNIHAREEFRHHS 112 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCCccccccccccc
Confidence 45778999999999999999998777788887654
No 264
>PF12728 HTH_17: Helix-turn-helix domain
Probab=69.89 E-value=8.6 Score=16.83 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.1
Q ss_pred CcccEEEeCCEEeecHHHHHHhHhC
Q 038935 51 KQVPVLVHGGRPVAESMVILEYIEE 75 (75)
Q Consensus 51 ~~vP~l~~~~~~l~es~~I~~yl~~ 75 (75)
|.+|.+..++.....-.++.+|+++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 5788888888899999999999864
No 265
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=69.07 E-value=9.4 Score=21.38 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhC
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLN 47 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~ 47 (75)
.-++...|-+|...++|+-++.++....+++|+..+
T Consensus 79 THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~S 114 (146)
T PRK05395 79 THTSVALRDALAAVSIPVIEVHLSNIHAREEFRHHS 114 (146)
T ss_pred HHHHHHHHHHHHcCCCCEEEEecCCccccccccccc
Confidence 346778999999999999999888777778887643
No 266
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=68.75 E-value=9.1 Score=22.95 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 21 ALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
.++..|+++++..+...+ ..++ |.--+-. |-+|+...|+..+. +.++.+.|
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~-gi~pV~~id~~~~~-~g~~~~~l 261 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLM-PVWPVRAIGETSYS-SGTLTRYL 261 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcc-eEEEEEEECCEEcc-chHHHHHH
Confidence 556779999999988653 2223 3322334 68899988877663 34555444
No 267
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=68.32 E-value=12 Score=20.86 Aligned_cols=37 Identities=8% Similarity=-0.081 Sum_probs=31.1
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhC
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLN 47 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~ 47 (75)
+.-.+...|.++....+|+-++.++.-..+++|+..+
T Consensus 77 ~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRhhS 113 (146)
T COG0757 77 YTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRHHS 113 (146)
T ss_pred chhhHHHHHHHHHhcCCCEEEEEecCchhcccccccc
Confidence 3456778999999999999999999888888888654
No 268
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=68.07 E-value=13 Score=18.19 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=23.0
Q ss_pred EEeeCCChhHHHHHHHHHh----c--CCceEEEEecCCCCcHHH
Q 038935 6 LLGTWPSSFCYRVIWALKL----K--GVEYEYVEVNIHNKSELL 43 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~----~--gi~~~~~~v~~~~~~~~~ 43 (75)
.|...+|+.|.+..-.|.+ . +-.++.+.|+.+....++
T Consensus 7 ~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~ 50 (95)
T PF13905_consen 7 YFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEW 50 (95)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHH
Confidence 4556799999977655544 2 366777777766544444
No 269
>PRK08118 topology modulation protein; Reviewed
Probab=67.82 E-value=12 Score=20.90 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=27.4
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
|.++.+.+.++|+-+.-++.+.+..|+++..
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 7788999999999999999999999998543
No 270
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=67.66 E-value=7.7 Score=20.78 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=19.2
Q ss_pred CCCCcccEEE-eCCEEeecHHHHHHhHh
Q 038935 48 PVHKQVPVLV-HGGRPVAESMVILEYIE 74 (75)
Q Consensus 48 p~~~~vP~l~-~~~~~l~es~~I~~yl~ 74 (75)
+. .++|.++ |+..++++...+.+-++
T Consensus 80 gi-~k~PAVVfD~~~VVYG~tDV~~A~~ 106 (114)
T PF07511_consen 80 GI-TKYPAVVFDDRYVVYGETDVARALA 106 (114)
T ss_pred Cc-cccCEEEEcCCeEEecccHHHHHHH
Confidence 34 5899998 66688898887776543
No 271
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=67.17 E-value=5.4 Score=24.20 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=34.3
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEe----ecHHHHHHhH
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPV----AESMVILEYI 73 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l----~es~~I~~yl 73 (75)
+..+++..|+++++..+...+ ..++ |.--+.. |-+|+-..++..+ .....+.+.|
T Consensus 208 v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~-gi~pV~~i~~~~~~~~~~~~gp~~~~l 269 (279)
T cd01557 208 ILELARDLGIKVEERPITRDELYEADEVFATGTAA-VVTPVGEIDYRGKEPGEGEVGPVTKKL 269 (279)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHhhCCEEEEeccee-EEEEEEEEccccccCCCCCCCHHHHHH
Confidence 334567889999999888753 2233 3333334 6789998877665 3444555443
No 272
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=67.15 E-value=11 Score=19.82 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.4
Q ss_pred cEEEeCCEEeecHHHHHHhHh
Q 038935 54 PVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 54 P~l~~~~~~l~es~~I~~yl~ 74 (75)
.+...+|..+++|..|++++.
T Consensus 4 ~v~~~~~~~~ttS~~IAe~fg 24 (108)
T TIGR02681 4 KVFTKRNQVVTDSLTMAQMFG 24 (108)
T ss_pred eEEEECCEEEEeHHHHHHHHC
Confidence 345678999999999999875
No 273
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=66.28 E-value=9 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEee
Q 038935 19 IWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
.-+++..|+++++..+...+ ..++ |.--+.. |-+|+-..|+..+.
T Consensus 226 l~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~-gi~PV~~id~~~~~ 273 (306)
T PRK06606 226 ITLAKDLGIEVIERRITRDELYIADEVFFTGTAA-EVTPIREVDGRQIG 273 (306)
T ss_pred HHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECcEECC
Confidence 34667889999999888752 2223 3333344 67899988887764
No 274
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=66.24 E-value=5.1 Score=25.39 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=31.3
Q ss_pred EeeCCChhHHHHHHHHHhcCCceE-------EEEecCC-CCcHHHhhhCCCCCcccEEE--eCCEEe
Q 038935 7 LGTWPSSFCYRVIWALKLKGVEYE-------YVEVNIH-NKSELLLQLNPVHKQVPVLV--HGGRPV 63 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l~~~gi~~~-------~~~v~~~-~~~~~~~~~~p~~~~vP~l~--~~~~~l 63 (75)
|+.+||+++++..-.++++.-.|. .++-..+ +..........- -+.|+|. .+|..+
T Consensus 20 FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I-~KyPTlKvfrnG~~~ 85 (375)
T KOG0912|consen 20 FYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHI-NKYPTLKVFRNGEMM 85 (375)
T ss_pred eehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcc-ccCceeeeeeccchh
Confidence 677899999999988877543222 2222222 223333333333 3678886 456443
No 275
>PRK13356 aminotransferase; Provisional
Probab=65.54 E-value=11 Score=22.90 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=32.9
Q ss_pred HHHHHhcCCceEEEEecCCC---CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHh
Q 038935 19 IWALKLKGVEYEYVEVNIHN---KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEY 72 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~y 72 (75)
.-.++..|+++++..++..+ ..+-|.--+.. +-+|+-..|+..+.. ..+.+.
T Consensus 219 i~~a~~~gi~v~e~~i~~~eL~~adevfltns~~-gi~PV~~id~~~~~~-g~~~~~ 273 (286)
T PRK13356 219 IALLREDGVTVVETTLTYEDFLEADEVFSTGNYS-KVVPVTRFDDRSLQP-GPVTRR 273 (286)
T ss_pred HHHHHHcCCeEEEEecCHHHHHhcCceEEecChh-eEEEEEEECCEEecC-ChHHHH
Confidence 34667889999999988752 22334433344 578999888876632 344443
No 276
>PRK06217 hypothetical protein; Validated
Probab=64.08 E-value=16 Score=20.50 Aligned_cols=30 Identities=10% Similarity=-0.103 Sum_probs=26.3
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
|.++.|.+.++|+-+.-++.+.+..|+++-
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 667889999999999999999999998854
No 277
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.74 E-value=1.8 Score=26.00 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=31.2
Q ss_pred EeeCCChhHHHHHHHHHhcCCceE-------EEEecCCC-CcHHHh-hhCCCCCcccEEE
Q 038935 7 LGTWPSSFCYRVIWALKLKGVEYE-------YVEVNIHN-KSELLL-QLNPVHKQVPVLV 57 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l~~~gi~~~-------~~~v~~~~-~~~~~~-~~~p~~~~vP~l~ 57 (75)
|...|||-|.+---.+.++.+.|. .+++.... ....|+ ..+|..+|+|+++
T Consensus 151 Ffa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~i 210 (265)
T KOG0914|consen 151 FFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYI 210 (265)
T ss_pred EEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEE
Confidence 344678888877666666655554 44444433 334444 4556557999886
No 278
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=63.72 E-value=6.9 Score=20.37 Aligned_cols=15 Identities=20% Similarity=0.179 Sum_probs=13.3
Q ss_pred ceEEEeeCCChhHHH
Q 038935 3 EVKLLGTWPSSFCYR 17 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~ 17 (75)
+++||+-..||.|++
T Consensus 2 ~v~vyyESlCPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESLCPDCRR 16 (108)
T ss_pred EEEEEEEecCHhHHH
Confidence 488999999999986
No 279
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=63.42 E-value=11 Score=22.21 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=14.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhc
Q 038935 4 VKLLGTWPSSFCYRVIWALKLK 25 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~ 25 (75)
+.||++.+|+-|-.+-..|...
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l 23 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSEL 23 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHh
Confidence 6899999888887776555554
No 280
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=63.40 E-value=9.1 Score=18.50 Aligned_cols=18 Identities=11% Similarity=-0.297 Sum_probs=13.6
Q ss_pred eeCCChhHHHHHHHHHhc
Q 038935 8 GTWPSSFCYRVIWALKLK 25 (75)
Q Consensus 8 ~~~~~p~~~~~~~~l~~~ 25 (75)
..++||.|....-.+...
T Consensus 40 ~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 40 WAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EcCcCHHHHhhchhHHHH
Confidence 378999999886666554
No 281
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=62.56 E-value=19 Score=21.49 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHhcCCceEEEEecCCC--CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 19 IWALKLKGVEYEYVEVNIHN--KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
.-.+...|+++++..++..+ ..++..-.|...|-+|+-..|+..+.. ..+.+.|
T Consensus 204 l~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id~~~~~~-~~~~~~l 259 (261)
T TIGR03461 204 LALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIGETSYPS-RTLTRLL 259 (261)
T ss_pred HHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEECCEEecc-hHHHHHh
Confidence 34567889999999988753 222322233322678999888877654 3565554
No 282
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=62.08 E-value=15 Score=19.04 Aligned_cols=20 Identities=10% Similarity=-0.249 Sum_probs=13.2
Q ss_pred EEEeeCCChhHHHHHHHHHh
Q 038935 5 KLLGTWPSSFCYRVIWALKL 24 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~ 24 (75)
..|...+||.|....-.|+.
T Consensus 30 v~F~a~~C~~C~~~~~~l~~ 49 (127)
T cd03010 30 LNVWASWCAPCREEHPVLMA 49 (127)
T ss_pred EEEEcCcCHHHHHHHHHHHH
Confidence 34556899999976544433
No 283
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=61.44 E-value=13 Score=22.76 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=30.3
Q ss_pred HHHHHhcCCceEEEEecCCC--Cc-HHHhhhCCCCCcccEEEeCCEEee
Q 038935 19 IWALKLKGVEYEYVEVNIHN--KS-ELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~--~~-~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
.-+++..|+++++..+...+ .. +-|.--+.. |-+|+-..|+..+.
T Consensus 218 l~la~~~g~~v~e~~i~~~eL~~adevfltns~~-gv~PV~~id~~~~~ 265 (298)
T TIGR01122 218 ITLAKELGIEVVEQPISREELYTADEAFFTGTAA-EITPIREVDGRKIG 265 (298)
T ss_pred HHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECCEECC
Confidence 33567889999999888753 22 223333445 68999988887664
No 284
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=60.96 E-value=5.8 Score=25.18 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=36.1
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecC--C----CCcHHHhhhCCCCCcccEEE--eCCEEe-----ecHHHHHHh
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNI--H----NKSELLLQLNPVHKQVPVLV--HGGRPV-----AESMVILEY 72 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~--~----~~~~~~~~~~p~~~~vP~l~--~~~~~l-----~es~~I~~y 72 (75)
=|+.+||..|.+..-+.++-|.+........ . ...+......+. +..|++. .+|..+ -+-.+|+.+
T Consensus 49 dFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgi-qGYPTIk~~kgd~a~dYRG~R~Kd~iieF 127 (468)
T KOG4277|consen 49 DFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGI-QGYPTIKFFKGDHAIDYRGGREKDAIIEF 127 (468)
T ss_pred EeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhcc-CCCceEEEecCCeeeecCCCccHHHHHHH
Confidence 4678999999998877777665544332111 1 123343333333 3478876 344333 234555544
No 285
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=60.84 E-value=31 Score=20.00 Aligned_cols=23 Identities=17% Similarity=-0.175 Sum_probs=16.7
Q ss_pred EeeCCChhHHH---HHHHHHhcCCce
Q 038935 7 LGTWPSSFCYR---VIWALKLKGVEY 29 (75)
Q Consensus 7 y~~~~~p~~~~---~~~~l~~~gi~~ 29 (75)
|...+|+.|+. ....|+.+|+++
T Consensus 66 ~~Aswc~~c~~e~P~l~~l~~~~~~~ 91 (184)
T TIGR01626 66 HIAGRTSAKEXNASLIDAIKAAKFPP 91 (184)
T ss_pred EEecCCChhhccchHHHHHHHcCCCc
Confidence 44468998884 456677788888
No 286
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=60.69 E-value=18 Score=21.92 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=29.9
Q ss_pred HHHHhcCCceEEEEecCCC--C-cHHHhhhCCCCCcccEEEeCCEEee
Q 038935 20 WALKLKGVEYEYVEVNIHN--K-SELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 20 ~~l~~~gi~~~~~~v~~~~--~-~~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
-.++..|++.++..+...+ . .+-|.--+.. |-+|+...|+..+.
T Consensus 211 ~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~-gv~pV~~i~~~~~~ 257 (283)
T PRK07650 211 KVLEELGIEVKEGFYTKEELLSADEVFVTNSIQ-EIVPLTRIEERDFP 257 (283)
T ss_pred HHHHHcCCeEEEEecCHHHHhhCCEeeeecCcc-cEEEEEEECCEEeC
Confidence 3567789999999888752 2 2233333345 68999998887763
No 287
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=60.60 E-value=11 Score=19.33 Aligned_cols=24 Identities=17% Similarity=0.028 Sum_probs=16.7
Q ss_pred EEEeeCCChhHH--------HHHHHHHhcCCc
Q 038935 5 KLLGTWPSSFCY--------RVIWALKLKGVE 28 (75)
Q Consensus 5 ~ly~~~~~p~~~--------~~~~~l~~~gi~ 28 (75)
.+++|+.||.+. .+|.-|+.+|+.
T Consensus 59 ~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 59 GVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 467888898754 456677777765
No 288
>PRK05569 flavodoxin; Provisional
Probab=58.96 E-value=26 Score=18.64 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=22.0
Q ss_pred CcceEEEeeCCChhHHHHHHHHHh----cCCceEEEEec
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKL----KGVEYEYVEVN 35 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~----~gi~~~~~~v~ 35 (75)
|.++.+.+++..+.++++--.+.+ .|++.+..++.
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 666666666678887766444333 57776665554
No 289
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=58.65 E-value=26 Score=19.97 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecC
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~ 36 (75)
.-+..+.+--.|++.||+|+.+.++-
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~VvSA 39 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVSA 39 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 33567788899999999999988874
No 290
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=58.24 E-value=21 Score=20.30 Aligned_cols=9 Identities=11% Similarity=-0.141 Sum_probs=7.1
Q ss_pred CCChhHHHH
Q 038935 10 WPSSFCYRV 18 (75)
Q Consensus 10 ~~~p~~~~~ 18 (75)
.+||.|.+-
T Consensus 42 ~~cp~C~~e 50 (187)
T TIGR03137 42 DFTFVCPTE 50 (187)
T ss_pred CcCCcCHHH
Confidence 689999864
No 291
>COG3150 Predicted esterase [General function prediction only]
Probab=58.11 E-value=16 Score=21.30 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=24.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
+-|++|+.||.+.++.+++...+-....+..
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y 33 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEY 33 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceee
Confidence 4688999999999999999887755444443
No 292
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=57.58 E-value=9.4 Score=16.00 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCceE
Q 038935 15 CYRVIWALKLKGVEYE 30 (75)
Q Consensus 15 ~~~~~~~l~~~gi~~~ 30 (75)
....|..|.++||+|.
T Consensus 6 V~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 6 VAQLKRILDEHGIEFP 21 (35)
T ss_dssp SHHHHHHHHHHT---S
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3467889999999985
No 293
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=57.47 E-value=12 Score=20.82 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhC
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLN 47 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~ 47 (75)
.-.+...+-+|+..++|+-++.++....+++|+..+
T Consensus 78 thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~~S 113 (140)
T PF01220_consen 78 THTSIAIRDALKAISIPVVEVHISNIHAREEFRHHS 113 (140)
T ss_dssp GHT-HHHHHHHHCCTS-EEEEESS-GGGS-GGGG--
T ss_pred ccccHHHHHHHHcCCCCEEEEEcCCccccccccccc
Confidence 345778999999999999988888766778887644
No 294
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=56.90 E-value=19 Score=21.77 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceEEEEecCCC---CcHHHhhhCCCCCcccEEEeCCEEeec--HHHHHHhH
Q 038935 17 RVIWALKLKGVEYEYVEVNIHN---KSELLLQLNPVHKQVPVLVHGGRPVAE--SMVILEYI 73 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~~~~l~e--s~~I~~yl 73 (75)
.+.-.++..|+++++..++..+ ..+-|.--+.. +-+|+-..|+..+.. ...+++.|
T Consensus 207 ~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~-gi~PV~~id~~~~~~~~~g~~~~~L 267 (276)
T TIGR01121 207 VILACAEENGIPVKEEPFTKEELLNADEVFVSSTTA-EITPVIEIDGQQIGDGKPGPWTRQL 267 (276)
T ss_pred HHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcc-cEEEEEEECCEECCCCCCCHHHHHH
Confidence 3344677889999999888652 22233333334 578999888766532 23444443
No 295
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=56.35 E-value=19 Score=21.98 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHhcCCceEEEEecCCC--C-cHHHhhhCCCCCcccEEEeCCEEe
Q 038935 19 IWALKLKGVEYEYVEVNIHN--K-SELLLQLNPVHKQVPVLVHGGRPV 63 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~--~-~~~~~~~~p~~~~vP~l~~~~~~l 63 (75)
.-+++..|+++++..+...+ . .+-|.--+.. |-+|+...|+..+
T Consensus 223 l~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~-gi~PV~~i~~~~~ 269 (292)
T PRK07544 223 IELAKRRGIEVVERHIMPEELAGFSECFLTGTAA-EVTPVSEIGEYRF 269 (292)
T ss_pred HHHHHHcCCeEEEEecCHHHHhhcCceeecCccc-eEEEEEEEeeEEe
Confidence 34567789999999988753 2 2333433445 6899998877655
No 296
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=54.81 E-value=26 Score=21.38 Aligned_cols=55 Identities=9% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEeec--HHHHHHhH
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPVAE--SMVILEYI 73 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l~e--s~~I~~yl 73 (75)
+.-.++..|+++++..+...+ ..++ |.--+.. +-+|+-..|+..+.+ ..++.+.|
T Consensus 215 llela~~~gi~v~E~~i~~~eL~~Adevfltns~~-gv~PV~~i~~~~~~~~~~g~~t~~l 274 (290)
T PRK12400 215 VLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTI-EILPMTHLDGTAIQDGQVGPITKML 274 (290)
T ss_pred HHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcc-eEEEEEEECCEECCCCCcCHHHHHH
Confidence 334667789999999988752 2333 3333334 689999888776643 23444433
No 297
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=54.31 E-value=43 Score=20.06 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHh-hhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLL-QLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
.|.+..+.-.|+.+|+++-..-=+......++. ..... | ++ +..+..++-+.+++.||.
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~-g-~~--~~~~~i~ts~~~~~~~l~ 82 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRL-G-FD--ISEDEVFTPAPAARQLLE 82 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHc-C-CC--CCHHHeEcHHHHHHHHHH
Confidence 555666667788888888654322222222333 23334 2 45 345667777778888874
No 298
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=54.11 E-value=20 Score=18.36 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCceEEEEecCCCCcHHHh-hhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 13 SFCYRVIWALKLKGVEYEYVEVNIHNKSELLL-QLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 13 p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
|-+..+.-.|+.+|.++-..-=+......++. +.... | ++ +..+..++-+.++++||.
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-G-i~--~~~~~i~ts~~~~~~~l~ 75 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-G-IP--VDEDEIITSGMAAAEYLK 75 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-T-TT----GGGEEEHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-C-cC--CCcCEEEChHHHHHHHHH
Confidence 44566667777788777654333323334554 23334 2 55 344667777777777775
No 299
>PRK14528 adenylate kinase; Provisional
Probab=54.11 E-value=30 Score=19.59 Aligned_cols=30 Identities=7% Similarity=-0.030 Sum_probs=25.6
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
|..+.+.+.++|+-+.-++.+.+..|+++-
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 677889999999999999988888887753
No 300
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=53.92 E-value=26 Score=21.49 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEeecH
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPVAES 66 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l~es 66 (75)
+.-.++..|+++++..+..++ ..++ |.--+.. |-+|+...|+..+...
T Consensus 224 vie~~~~~g~~v~er~i~~~eL~~Adevfltns~~-gi~pV~~id~~~~~~~ 274 (292)
T PRK07849 224 LFEVAREKGWDCEYRALRPADLFAADGVWLVSSVR-LAARVHTLDGRPLPRD 274 (292)
T ss_pred HHHHHHHcCCceEEEECCHHHHhhCCEEEEecCcc-eEEEEEEECCEECCCC
Confidence 334567789999999988763 2223 3333345 6899999888766543
No 301
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.82 E-value=15 Score=21.06 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=12.9
Q ss_pred eEEEeeCCChhHHHHH
Q 038935 4 VKLLGTWPSSFCYRVI 19 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~ 19 (75)
+-++..+.|+||.+.+
T Consensus 46 llmfes~~C~yC~~~K 61 (182)
T COG2143 46 LLMFESNGCSYCERFK 61 (182)
T ss_pred EEEEcCCCChHHHHHH
Confidence 4578889999998764
No 302
>PRK08105 flavodoxin; Provisional
Probab=53.40 E-value=37 Score=18.66 Aligned_cols=34 Identities=21% Similarity=0.052 Sum_probs=23.2
Q ss_pred CcceEEEeeCCChhHHHH----HHHHHhcCCceEEEEe
Q 038935 1 MEEVKLLGTWPSSFCYRV----IWALKLKGVEYEYVEV 34 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~----~~~l~~~gi~~~~~~v 34 (75)
|+++.+++....+.++.+ ...|...|++....+.
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEech
Confidence 788888888777776644 4555667777665543
No 303
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=53.08 E-value=33 Score=18.03 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=11.8
Q ss_pred EEeeCCChhHHHHHHHH
Q 038935 6 LLGTWPSSFCYRVIWAL 22 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l 22 (75)
.|..++||.|+...-.|
T Consensus 23 ~F~atwC~~C~~~~p~l 39 (132)
T cd02964 23 YFSASWCPPCRAFTPKL 39 (132)
T ss_pred EEECCCCchHHHHHHHH
Confidence 35567899999765444
No 304
>PRK14368 Maf-like protein; Provisional
Probab=52.93 E-value=41 Score=19.60 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=22.8
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|.+..|.-.+.||+-+ -+|+..|++|+.+..+.+
T Consensus 2 ~~~~~lILAS~SprR~---eLL~~~g~~f~v~~~~iD 35 (193)
T PRK14368 2 MANSPIVLASASPRRS---ELLASAGIEFDVVPADIP 35 (193)
T ss_pred CCCCcEEEeCCCHHHH---HHHHHCCCCeEEEcCCCC
Confidence 4455666666777543 347889999998766554
No 305
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=52.88 E-value=13 Score=25.11 Aligned_cols=19 Identities=5% Similarity=-0.055 Sum_probs=13.1
Q ss_pred EEeeCCChhHHHHHHHHHh
Q 038935 6 LLGTWPSSFCYRVIWALKL 24 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~ 24 (75)
-|..+|||.|.+..-.|++
T Consensus 62 ~FWATWCppCk~emP~L~e 80 (521)
T PRK14018 62 KFWASWCPLCLSELGETEK 80 (521)
T ss_pred EEEcCCCHHHHHHHHHHHH
Confidence 3556799999987555543
No 306
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=52.76 E-value=34 Score=18.00 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=24.3
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.+.||+.+.. +...+..-|+..||+|-..++...
T Consensus 16 ~LvL~T~~~~-~~~~~~~rL~~~~I~y~iq~v~~~ 49 (101)
T PF09633_consen 16 QLVLHTLPKR-YEEFAIARLERQGIDYFIQPVGNG 49 (101)
T ss_dssp SEEEEEEEGG-GHHHHHHHHHHTT--EEEEE-TSS
T ss_pred hHhhhhCCHh-hHHHHHHHHHHCCCCEEEEEcCCC
Confidence 4677877544 677888899999999999988754
No 307
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=51.76 E-value=12 Score=22.31 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.3
Q ss_pred ceEEEeeCCChhHHH
Q 038935 3 EVKLLGTWPSSFCYR 17 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~ 17 (75)
+++||+-.-||+|.+
T Consensus 42 ~ItlyyEaLCPdc~~ 56 (220)
T KOG3160|consen 42 NITLYYEALCPDCSK 56 (220)
T ss_pred EEEEEEEecCccHHH
Confidence 589999999999985
No 308
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=51.50 E-value=21 Score=18.34 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=23.6
Q ss_pred HHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEee
Q 038935 19 IWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
.-.|+.+|+..-.+-+...+...+|.+...+ ..|++.|.+..++
T Consensus 6 ~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~--p~~ly~D~~~~lY 49 (115)
T PF13911_consen 6 KPELEAAGVKLVVIGCGSPEGIEKFCELTGF--PFPLYVDPERKLY 49 (115)
T ss_pred HHHHHHcCCeEEEEEcCCHHHHHHHHhccCC--CCcEEEeCcHHHH
Confidence 4456667776555444433235566655554 3565556554443
No 309
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=51.42 E-value=17 Score=21.01 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=35.4
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHHHhhhC-CCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSELLLQLN-PVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
+.-+.++.|+++++..++..+ ..++..-.| -. |-.|+-..++..+. ...+.+-|
T Consensus 171 ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~-gi~pV~~i~~~~~~-~~p~~~~L 227 (231)
T PF01063_consen 171 LLELAKELGIPVEERPITLDDLQQADEVFLTNSLR-GIRPVKSIDGRSFG-PGPITRRL 227 (231)
T ss_dssp HHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTT-EEEEEEEETTEEST-THHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchh-hEEEEEEECCEECC-CCHHHHHH
Confidence 345566689999999888653 222322233 34 67899889988877 77777655
No 310
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=51.26 E-value=42 Score=18.62 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=26.7
Q ss_pred EEeeCCChhHHHHHHHHHhcCCc----eEEEEecCCCCcHHHhhhCCCCCcccEE
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVE----YEYVEVNIHNKSELLLQLNPVHKQVPVL 56 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~l 56 (75)
-|+.+||+.|...--.|++.--. .....||.++ .+++.....-.+..|++
T Consensus 29 dF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe-~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 29 RFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE-VPDFNTMYELYDPCTVM 82 (142)
T ss_pred EEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC-CHHHHHHcCccCCCcEE
Confidence 37778999999887666554322 2223444433 44554433221234555
No 311
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=50.97 E-value=19 Score=19.33 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=18.7
Q ss_pred CCCCCcccEEE-eCCEEeecHHHHHHhH
Q 038935 47 NPVHKQVPVLV-HGGRPVAESMVILEYI 73 (75)
Q Consensus 47 ~p~~~~vP~l~-~~~~~l~es~~I~~yl 73 (75)
.+. .++|.++ |+..++++...+.+-+
T Consensus 80 lGi-~k~PAVV~D~~~VVYG~~DV~~A~ 106 (113)
T TIGR03757 80 LGV-TKIPAVVVDRRYVVYGETDVARAL 106 (113)
T ss_pred cCC-ccCCEEEEcCCeEEecCccHHHHH
Confidence 345 5899998 5567888887776654
No 312
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=50.28 E-value=21 Score=20.64 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=8.4
Q ss_pred EeeCCChhHHHHH
Q 038935 7 LGTWPSSFCYRVI 19 (75)
Q Consensus 7 y~~~~~p~~~~~~ 19 (75)
|...+||.|..-.
T Consensus 33 ~pa~~cp~C~~el 45 (203)
T cd03016 33 HPADFTPVCTTEL 45 (203)
T ss_pred ecCCCCCcCHHHH
Confidence 3346799888643
No 313
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.57 E-value=39 Score=17.79 Aligned_cols=40 Identities=18% Similarity=0.003 Sum_probs=32.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHH
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELL 43 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~ 43 (75)
+-|++-++|+-+.-++.+++..+.++..+.+.......++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccc
Confidence 5688999999999999999999999988888765444444
No 314
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=49.44 E-value=34 Score=19.70 Aligned_cols=31 Identities=10% Similarity=-0.029 Sum_probs=28.0
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
++.|.++.+++-+.--|.+.+.+|.+|-+.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 5899999999999999999999999997654
No 315
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=48.88 E-value=40 Score=17.69 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=16.1
Q ss_pred eeCCChhHHHHHHHHHhcCCceEEE
Q 038935 8 GTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 8 ~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
.....|...-++.+.+++|||+++.
T Consensus 62 r~~~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 62 RDPDDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred CCCCCccHHHHHHHHHHcCCcEEEe
Confidence 3345566666777777777777654
No 316
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=48.77 E-value=45 Score=18.28 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=25.7
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
.+.|.+.++|+=+...+.+.+..|.+|-..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 577888999999999999999999987644
No 317
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=48.63 E-value=26 Score=20.97 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEee--cHHHHHHhH
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPVA--ESMVILEYI 73 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l~--es~~I~~yl 73 (75)
+.-.++..|++.++..+...+ ..++ |.--+.. |-+|+-..++..+. ....+.+.|
T Consensus 207 vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~-gv~PV~~i~~~~~~~~~~~~~~~~l 266 (270)
T cd01558 207 VIELAKELGIPVEERPFSLEELYTADEVFLTSTTA-EVMPVVEIDGRPIGDGKPGPVTKRL 266 (270)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcc-cEEEEEEECCeECCCCCCCHHHHHH
Confidence 334567789999998888652 2223 3333334 68899988776553 224454444
No 318
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.07 E-value=81 Score=21.07 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCChhHHHHHHHHHhcC--Cc-eEEEEecCC-CCcHHHh-h---hCCCC-CcccEEE----e-C--CEEeecHHHHHHhH
Q 038935 10 WPSSFCYRVIWALKLKG--VE-YEYVEVNIH-NKSELLL-Q---LNPVH-KQVPVLV----H-G--GRPVAESMVILEYI 73 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~g--i~-~~~~~v~~~-~~~~~~~-~---~~p~~-~~vP~l~----~-~--~~~l~es~~I~~yl 73 (75)
..|||-.|+.++.+++. +| |..+.|... +..++|+ . .|++. ++-|++. + + |.-|.+.+.-.+|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 47999999999999864 54 888887765 2333343 2 34432 5789985 2 2 36688888888776
Q ss_pred h
Q 038935 74 E 74 (75)
Q Consensus 74 ~ 74 (75)
.
T Consensus 82 ~ 82 (452)
T cd05295 82 E 82 (452)
T ss_pred H
Confidence 3
No 319
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=47.31 E-value=40 Score=17.21 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=25.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
+-|++-++|+-+.-++.+.+..|.++-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 357899999999999999999998875444
No 320
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=47.16 E-value=17 Score=19.21 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=17.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhc
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLK 25 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~ 25 (75)
..+.+..+.||.|.+.|..|...
T Consensus 25 ~~k~H~~s~Cp~C~kkraeLa~~ 47 (104)
T PF15379_consen 25 TAKQHNSSQCPSCNKKRAELAQS 47 (104)
T ss_pred cccccCcccChHHHHHHHHHHHH
Confidence 35677788999999987666553
No 321
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=46.84 E-value=29 Score=19.99 Aligned_cols=9 Identities=11% Similarity=-0.049 Sum_probs=6.7
Q ss_pred eCCChhHHH
Q 038935 9 TWPSSFCYR 17 (75)
Q Consensus 9 ~~~~p~~~~ 17 (75)
..+||.|..
T Consensus 41 ~~~~p~C~~ 49 (187)
T PRK10382 41 ADFTFVCPT 49 (187)
T ss_pred CCCCCcCHH
Confidence 467888876
No 322
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=46.73 E-value=48 Score=18.01 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCceEEEEecCC
Q 038935 16 YRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 16 ~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
++++-+|+..|++|+.+.....
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~ 23 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPE 23 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCC
Confidence 4678889999999998876543
No 323
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=46.49 E-value=45 Score=18.65 Aligned_cols=26 Identities=4% Similarity=-0.110 Sum_probs=20.7
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCc
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVE 28 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~ 28 (75)
++.+|...+|.++.++.+.|...|..
T Consensus 118 ~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 118 PLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred EEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 46777777788888888888888865
No 324
>PF13961 DUF4219: Domain of unknown function (DUF4219)
Probab=45.92 E-value=17 Score=14.08 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=13.6
Q ss_pred CCChhHHHHHHHHHhcCC
Q 038935 10 WPSSFCYRVIWALKLKGV 27 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi 27 (75)
++.-++.+.+..|..+++
T Consensus 5 NY~~W~~~M~~~L~~~~l 22 (27)
T PF13961_consen 5 NYSTWKIRMKAYLESQDL 22 (27)
T ss_pred CHHHHHHHHHHHHHHcch
Confidence 455678888889888874
No 325
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=45.77 E-value=57 Score=18.61 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=28.0
Q ss_pred EEeeCCChhHHHHHH-------HHHhcCCceEEEEecCCCCcHHHh--------hhCCCCCcccEEE---eCCEEee
Q 038935 6 LLGTWPSSFCYRVIW-------ALKLKGVEYEYVEVNIHNKSELLL--------QLNPVHKQVPVLV---HGGRPVA 64 (75)
Q Consensus 6 ly~~~~~p~~~~~~~-------~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~l~---~~~~~l~ 64 (75)
-.++.+|.+|+.... +.+..+-.|--+.+|.++ .++.- ..++. |.-|.-+ .++..++
T Consensus 43 ~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree-~Pdid~~y~~~~~~~~~~-gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 43 SIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE-RPDIDKIYMNAVQAMSGS-GGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp EEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT--HHHHHHHHHHHHHHHS----SSEEEEE-TTS-EEE
T ss_pred EEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc-CccHHHHHHHHHHHhcCC-CCCCceEEECCCCCeee
Confidence 356789999996642 344445567777788664 23321 22345 4678654 3565544
No 326
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=45.41 E-value=58 Score=18.81 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=11.4
Q ss_pred CcccEEEeCCEEeec
Q 038935 51 KQVPVLVHGGRPVAE 65 (75)
Q Consensus 51 ~~vP~l~~~~~~l~e 65 (75)
..+|+++.+|..+..
T Consensus 166 ~gtPtfiInGky~v~ 180 (207)
T PRK10954 166 RGVPAMFVNGKYMVN 180 (207)
T ss_pred CCCCEEEECCEEEEc
Confidence 369999999876544
No 327
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=45.16 E-value=7.9 Score=21.29 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=23.9
Q ss_pred ceEEEEecCCC--CcHHHhhhCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 28 EYEYVEVNIHN--KSELLLQLNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 28 ~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
+.+.+.++... -..++.-.-|- .+|+|+.+..+=-++..|++||.
T Consensus 64 ~~e~v~l~~~~GrIsae~i~pYPP--GIPll~pGE~it~~~~~~i~yl~ 110 (136)
T PF03711_consen 64 EKERVPLEEAVGRISAEFIVPYPP--GIPLLVPGERITEETEEIIDYLL 110 (136)
T ss_dssp -EEEEEGGG-TTSBBSS-BEECTT--TS-SB-TTEEB-STTHHHHHHHH
T ss_pred cceEEEccccCCeEEEeeeeecCC--CCcEECCccccccchHHHHHHHH
Confidence 34444444331 23344444554 39988877766677899999985
No 328
>PRK02496 adk adenylate kinase; Provisional
Probab=44.91 E-value=51 Score=18.36 Aligned_cols=30 Identities=10% Similarity=-0.021 Sum_probs=25.1
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
|.++.+.+.++|+-+.-++.+.+..|+++-
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 456788999999999999999888887654
No 329
>PRK03839 putative kinase; Provisional
Probab=44.75 E-value=50 Score=18.33 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=24.8
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
+.|.+.++|+-+...+.+.+..|++|-.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id 30 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVD 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 7889999999999999999999988743
No 330
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=44.59 E-value=40 Score=16.52 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=32.0
Q ss_pred eEEEeeCCChhHHHHH----HHHHh-cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVI----WALKL-KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~----~~l~~-~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
++||-...+|.+.++- -++++ .+-+|+...||..+ .+++.+...- -..|+|+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~-~P~lAe~~~i-vAtPtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK-QPQLAEEDKI-VATPTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc-CHhHHhhCCE-EEechhh
Confidence 6788888878877653 33333 46688888888754 3444444333 2467765
No 331
>PRK14531 adenylate kinase; Provisional
Probab=44.40 E-value=55 Score=18.38 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=25.0
Q ss_pred Cc-ceEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 1 ME-EVKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 1 M~-~~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
|. .+.+.+.++|+-+.-.+.+.+..|+++-
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 44 5778999999999999999999898763
No 332
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=43.97 E-value=6.3 Score=20.64 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.1
Q ss_pred eCCChhHHHHHHHHHhcCCceEEE
Q 038935 9 TWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 9 ~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
|.....|.+....|+...|||+..
T Consensus 43 fsnnqhclrtmrhleklkipyefq 66 (138)
T PF05663_consen 43 FSNNQHCLRTMRHLEKLKIPYEFQ 66 (138)
T ss_pred HcCcHHHHHHHHHHHhcCCCeeee
Confidence 455678999999999999999875
No 333
>PHA03033 hypothetical protein; Provisional
Probab=43.70 E-value=41 Score=18.51 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=16.5
Q ss_pred cHHHhhhCCCCCcccEEEeCCEEee
Q 038935 40 SELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 40 ~~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
-.++++.+...|.|++|.+++..++
T Consensus 48 V~eLk~Qkk~~GeVAvLk~d~RyIY 72 (142)
T PHA03033 48 IKELKKQKKKKGEVAYIYKNNKYII 72 (142)
T ss_pred HHHHHhhccCCCeEEEEecCCEEEE
Confidence 4555554433378999999886643
No 334
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.56 E-value=33 Score=24.19 Aligned_cols=31 Identities=16% Similarity=-0.050 Sum_probs=27.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
+-||+-++|+-+.-++.+..++|+||-.+..
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isA 256 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISA 256 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEeecc
Confidence 5688999999999999999999999987654
No 335
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=42.98 E-value=57 Score=20.03 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=22.2
Q ss_pred eEEEeeCCChhHHHH--HHHHHhcCCceEEEE
Q 038935 4 VKLLGTWPSSFCYRV--IWALKLKGVEYEYVE 33 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~--~~~l~~~gi~~~~~~ 33 (75)
.+|++-+.+-|+... ...|+..||+|+.++
T Consensus 79 vRLhSGDpsiYgA~~EQm~~L~~~gI~yevvP 110 (254)
T COG2875 79 VRLHSGDPSIYGALAEQMRELEALGIPYEVVP 110 (254)
T ss_pred EEeecCChhHHHHHHHHHHHHHHcCCCeEEeC
Confidence 467777777776543 467899999999764
No 336
>PRK04182 cytidylate kinase; Provisional
Probab=42.56 E-value=58 Score=17.77 Aligned_cols=28 Identities=11% Similarity=-0.067 Sum_probs=24.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
+.+.+.++|+-+.-++.+.+..|+++-.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7888999999999999999999987654
No 337
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=41.72 E-value=41 Score=18.08 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=20.6
Q ss_pred eeCCChhHH-HHHHHHHhcCCceEEEEecC
Q 038935 8 GTWPSSFCY-RVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 8 ~~~~~p~~~-~~~~~l~~~gi~~~~~~v~~ 36 (75)
.++.|+.|+ +.|++-.+.|...+..+.+-
T Consensus 74 ~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~~ 103 (118)
T PF14427_consen 74 QYPPCNSCKGKMRRASEKSGATIQYTWPNG 103 (118)
T ss_pred ecCCCchhHHHHHHhhhccCcEEEEecCCC
Confidence 457899998 66677777888776665543
No 338
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=41.46 E-value=44 Score=20.46 Aligned_cols=14 Identities=14% Similarity=-0.204 Sum_probs=8.9
Q ss_pred eEEEee--CCChhHHH
Q 038935 4 VKLLGT--WPSSFCYR 17 (75)
Q Consensus 4 ~~ly~~--~~~p~~~~ 17 (75)
+.|+.+ .+||.|..
T Consensus 101 vVL~FyPa~ftpvCt~ 116 (261)
T PTZ00137 101 GLLVFYPLDFTFVCPS 116 (261)
T ss_pred EEEEEECCCCCCCCHH
Confidence 344433 68888886
No 339
>PRK13599 putative peroxiredoxin; Provisional
Probab=41.46 E-value=51 Score=19.40 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=8.5
Q ss_pred EEee--CCChhHHHH
Q 038935 6 LLGT--WPSSFCYRV 18 (75)
Q Consensus 6 ly~~--~~~p~~~~~ 18 (75)
|+.+ .+||.|..=
T Consensus 33 L~~~pa~~tpvCt~E 47 (215)
T PRK13599 33 LFSHPADFTPVCTTE 47 (215)
T ss_pred EEEeCCCCCCcCHHH
Confidence 4444 578888863
No 340
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=41.27 E-value=41 Score=17.05 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCC----------------C---CcHHHhhhCCCCCcccEEEeC--CEEeecHHHHH
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIH----------------N---KSELLLQLNPVHKQVPVLVHG--GRPVAESMVIL 70 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~----------------~---~~~~~~~~~p~~~~vP~l~~~--~~~l~es~~I~ 70 (75)
|-.+.+++-+++++|++++....+.. + ...++.+.... ..+|+...+ .....+..+|+
T Consensus 13 S~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~-~~~pv~~I~~~~Y~~~dg~~il 91 (96)
T cd05564 13 SILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAE-YGIPVAVIDMMDYGMMNGEKVL 91 (96)
T ss_pred HHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhcc-CCCcEEEcChHhcccCCHHHHH
Confidence 44577899999999999887765531 0 11223322223 358988854 45567777776
Q ss_pred HhH
Q 038935 71 EYI 73 (75)
Q Consensus 71 ~yl 73 (75)
..+
T Consensus 92 ~~~ 94 (96)
T cd05564 92 KQA 94 (96)
T ss_pred HHH
Confidence 654
No 341
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=41.09 E-value=54 Score=19.61 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.8
Q ss_pred EEeeCCChhHHHHHHHHHhcCCce
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEY 29 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~ 29 (75)
|+....||.++++|-.|+..|+..
T Consensus 150 i~~t~~~pla~~~R~~Lrk~~~~~ 173 (231)
T cd00755 150 ISKTSGDPLARKVRKRLRKRGIFF 173 (231)
T ss_pred EeccccCcHHHHHHHHHHHcCCCC
Confidence 566678999999999999999963
No 342
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=41.02 E-value=45 Score=20.31 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEee
Q 038935 17 RVIWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
.+.-.++..|+++++..+...+ ..++ |.--+.. |-.|+-..|+..+.
T Consensus 213 ~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~-gi~pV~~id~~~~~ 262 (286)
T PRK06680 213 TLIDLAKELGLEVEERPFTLQEAYAAREAFITAASS-FVFPVVQIDGKQIG 262 (286)
T ss_pred HHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcc-cEEEEEEECCEECC
Confidence 3444667789999999888652 2233 3332334 57899988876664
No 343
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=40.97 E-value=83 Score=19.13 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=34.6
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhh-CCCCCcccEEEeCC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQL-NPVHKQVPVLVHGG 60 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~-~p~~~~vP~l~~~~ 60 (75)
.+-+|+-++++-+.-++++.++.|.++....-..-++..++.++ ... +.=.+|..|+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l-~~~~ILFIDE 109 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL-KEGDILFIDE 109 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT---TT-EEEECT
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc-CCCcEEEEec
Confidence 36789999999999999999999999976544322344544431 112 2334666655
No 344
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=40.00 E-value=58 Score=17.76 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=18.8
Q ss_pred CcceEEEeeCCChhHHHHH-HHHHhcCCc
Q 038935 1 MEEVKLLGTWPSSFCYRVI-WALKLKGVE 28 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~-~~l~~~gi~ 28 (75)
|.++-|++++..+.++.+- .+-+..|-.
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~ 29 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD 29 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC
Confidence 7778888888888888654 333444433
No 345
>PRK00625 shikimate kinase; Provisional
Probab=39.69 E-value=72 Score=18.05 Aligned_cols=29 Identities=10% Similarity=-0.169 Sum_probs=25.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
+.|.+.++|+=+...+.+.+..|.+|-..
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~ 31 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDT 31 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEh
Confidence 78899999999999999999999887544
No 346
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=39.54 E-value=44 Score=19.80 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=31.5
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHHHhhhC-CCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSELLLQLN-PVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
+.-.++..|++.++..+...+ ...+..-.| .. |-+|+-..|+. -.....+.+.|
T Consensus 189 ~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~-gi~pV~~id~~-~~~~~~~~~~l 245 (249)
T cd01559 189 VIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLL-GVAPVTAIDDH-DGPPGPLTRAL 245 (249)
T ss_pred HHHHHHHcCceEEEEecCHHHHhhCCEEEEecCcc-ceeEEEEECCc-ccCccHHHHHH
Confidence 334567789999999888653 222322233 34 67899886652 23444555544
No 347
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=39.47 E-value=48 Score=20.14 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCceEEEEecCCC--CcHHHhhhC-CCCCcccEEEeCCEEe
Q 038935 17 RVIWALKLKGVEYEYVEVNIHN--KSELLLQLN-PVHKQVPVLVHGGRPV 63 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~~vP~l~~~~~~l 63 (75)
.+.-.+...|+++++..++..+ ..++..-.| .. |-+|+-..++..+
T Consensus 215 ~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~-gv~pV~~i~~~~~ 263 (288)
T PRK08320 215 AVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAA-EVIPVVKVDGRVI 263 (288)
T ss_pred HHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChh-hEEEEEEECCEEC
Confidence 3344567779999999988653 223322233 34 6899998877655
No 348
>PRK09004 FMN-binding protein MioC; Provisional
Probab=39.42 E-value=66 Score=17.61 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=22.7
Q ss_pred CcceEEEeeCCChhHHHHH----HHHHhcCCceEEEE
Q 038935 1 MEEVKLLGTWPSSFCYRVI----WALKLKGVEYEYVE 33 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~----~~l~~~gi~~~~~~ 33 (75)
|+++.+++....+.++.+- -.+...|...+..+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 8888888888888777553 44555677766543
No 349
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=38.92 E-value=59 Score=16.82 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhcCCceEEEEecCC-------------------CCcHHHhhhCCCCCcccEEEeC----CEEeecHHHH
Q 038935 13 SFCYRVIWALKLKGVEYEYVEVNIH-------------------NKSELLLQLNPVHKQVPVLVHG----GRPVAESMVI 69 (75)
Q Consensus 13 p~~~~~~~~l~~~gi~~~~~~v~~~-------------------~~~~~~~~~~p~~~~vP~l~~~----~~~l~es~~I 69 (75)
--+.+++-+++++|++++..-.+.. ...+++.+..+. ..+|+...+ |....+-..|
T Consensus 15 ~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~-~~ipv~~I~~~~Yg~~~~dg~~v 93 (99)
T cd05565 15 LLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDR-LGIKLVTTTGKQYIELTRDPDGA 93 (99)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhh-cCCCEEEeCHHHHhHHhCCHHHH
Confidence 3577999999999999887654422 112333433433 258998876 3224555555
Q ss_pred HH
Q 038935 70 LE 71 (75)
Q Consensus 70 ~~ 71 (75)
++
T Consensus 94 l~ 95 (99)
T cd05565 94 LK 95 (99)
T ss_pred HH
Confidence 54
No 350
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.85 E-value=56 Score=18.53 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=31.5
Q ss_pred ceEEEeeC--CChhHHH----HHHHHH-hcCCceEEEEecCC--CCcHHHhhhCCCCCcccEEEeCCEEe
Q 038935 3 EVKLLGTW--PSSFCYR----VIWALK-LKGVEYEYVEVNIH--NKSELLLQLNPVHKQVPVLVHGGRPV 63 (75)
Q Consensus 3 ~~~ly~~~--~~p~~~~----~~~~l~-~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~~~~~l 63 (75)
++.||-+| ++|-|.+ -|-.+. ..+...+..-|+.+ .....|.+.... +.|.|-|.+..+
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L--~f~LLSD~~~~v 99 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL--TFPLLSDEDGEV 99 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC--CceeeECCcHHH
Confidence 36677775 3444432 222222 22334555556555 356677777665 488887766443
No 351
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=38.68 E-value=65 Score=18.89 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=20.5
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
.+||+--.-.....+...|...||+|+...
T Consensus 29 ~~L~~~l~~~da~~i~~~L~~~gI~y~~~~ 58 (206)
T PF01514_consen 29 VVLYSGLDEEDANEIVAALDENGIPYKLSD 58 (206)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHTT--EEEEE
T ss_pred eecccCCCHHHHHHHHHHHHHCCCCcEecC
Confidence 456665445567889999999999999864
No 352
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=38.66 E-value=16 Score=19.34 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=21.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEec
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVN 35 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~ 35 (75)
+.+|+.+.+|+.-.+..+.+..||+...+...
T Consensus 51 ieVYg~~~~p~~~~ll~~c~~r~Ipvrlv~~~ 82 (115)
T PF04705_consen 51 IEVYGSDGSPVPPELLAACRQRGIPVRLVDSA 82 (115)
T ss_dssp EEEEEETTS---CCCCHHHHCTT--EEEE-HH
T ss_pred EEEeeecCCCCChHHHHHHHhcCCceEEecHH
Confidence 57888888888888888888889988877644
No 353
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=38.47 E-value=49 Score=18.22 Aligned_cols=13 Identities=0% Similarity=0.031 Sum_probs=9.2
Q ss_pred EEeeCCChhHHHH
Q 038935 6 LLGTWPSSFCYRV 18 (75)
Q Consensus 6 ly~~~~~p~~~~~ 18 (75)
.|...+||.|.+.
T Consensus 31 ~f~~t~Cp~c~~~ 43 (171)
T cd02969 31 MFICNHCPYVKAI 43 (171)
T ss_pred EEECCCCccHHHH
Confidence 4556789998754
No 354
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=37.68 E-value=70 Score=19.66 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHhcCCceEEEEecCCC--Cc-HHHhhhCCCCCcccEEEeCCEEee
Q 038935 19 IWALKLKGVEYEYVEVNIHN--KS-ELLLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 19 ~~~l~~~gi~~~~~~v~~~~--~~-~~~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
.-.++..|+++++..+..++ .. +-|.--+.. |-+|+-..|+..+.
T Consensus 218 l~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~-gi~PV~~id~~~~~ 265 (299)
T PRK12479 218 IELCERLSIPCEERPFTRHDVYVADEVFLTGTAA-ELIPVVKVDSREIG 265 (299)
T ss_pred HHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcc-cEEEEEEECCEEcC
Confidence 33567789999999988753 22 233333334 67899988776663
No 355
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=37.55 E-value=48 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=10.4
Q ss_pred EEeeCCChh-HHHHHHHH
Q 038935 6 LLGTWPSSF-CYRVIWAL 22 (75)
Q Consensus 6 ly~~~~~p~-~~~~~~~l 22 (75)
.+...+|+. |.+-...|
T Consensus 28 ~f~~~~C~~~C~~~l~~l 45 (142)
T cd02968 28 YFGYTHCPDVCPTTLANL 45 (142)
T ss_pred EEEcCCCcccCHHHHHHH
Confidence 445588997 87543333
No 356
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=37.15 E-value=51 Score=17.96 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCceEEEEecCC
Q 038935 17 RVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.++-+|+++|++|+.+.....
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~ 22 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVD 22 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCC
Confidence 467789999999999887753
No 357
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=36.84 E-value=49 Score=15.31 Aligned_cols=15 Identities=47% Similarity=0.474 Sum_probs=11.1
Q ss_pred CCChhHHHHHHHHHh
Q 038935 10 WPSSFCYRVIWALKL 24 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~ 24 (75)
+.+.+|+|+-.+|++
T Consensus 13 d~~~fc~rVt~aL~~ 27 (54)
T PF08410_consen 13 DDSAFCHRVTEALNE 27 (54)
T ss_pred ChHHHHHHHHHHHHc
Confidence 456788888887765
No 358
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=36.76 E-value=18 Score=18.47 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=15.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCce
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEY 29 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~ 29 (75)
.+.|..|+..+...++-++.+.|..|
T Consensus 97 ~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 97 PKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp ESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred CcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 34555566666677777777777765
No 359
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=36.56 E-value=60 Score=16.17 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCceEEEEecCC
Q 038935 16 YRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 16 ~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.+++-+|++.|++++....+..
T Consensus 5 mkIk~~L~e~Gi~~~ve~~dis 26 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAVG 26 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeehh
Confidence 3678899999999887766653
No 360
>PRK03972 ribosomal biogenesis protein; Validated
Probab=35.88 E-value=75 Score=18.96 Aligned_cols=25 Identities=8% Similarity=-0.142 Sum_probs=19.2
Q ss_pred eeCCCh-hHHHHHHHHHhcCCceEEE
Q 038935 8 GTWPSS-FCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 8 ~~~~~p-~~~~~~~~l~~~gi~~~~~ 32 (75)
++...+ .+.+++.+.++.|++|..+
T Consensus 112 s~kt~~g~~~~Ak~lA~eLgi~yV~R 137 (208)
T PRK03972 112 AKRVGLDHMAFAQVFAELTGGKFVPR 137 (208)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceeCc
Confidence 444454 5789999999999999643
No 361
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=35.63 E-value=76 Score=17.14 Aligned_cols=25 Identities=12% Similarity=-0.048 Sum_probs=15.6
Q ss_pred eEEEeeC--CChhHHHHHHHHHhcCCc
Q 038935 4 VKLLGTW--PSSFCYRVIWALKLKGVE 28 (75)
Q Consensus 4 ~~ly~~~--~~p~~~~~~~~l~~~gi~ 28 (75)
+.+|... ....+.++.++|+..|.+
T Consensus 98 vVvY~~~~~~g~~A~r~~~~l~~~G~~ 124 (138)
T cd01445 98 LIATDGDDLGGFTACHIALAARLCGHP 124 (138)
T ss_pred EEEECCCCCcchHHHHHHHHHHHcCCC
Confidence 4455432 245667777888887765
No 362
>PRK14532 adenylate kinase; Provisional
Probab=35.59 E-value=83 Score=17.55 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.4
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
+.+.+.++|+-+..++.+.+..|..+-
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 788999999999999999998887653
No 363
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.12 E-value=31 Score=20.01 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.2
Q ss_pred eCCEEeecHHHHHHhHhC
Q 038935 58 HGGRPVAESMVILEYIEE 75 (75)
Q Consensus 58 ~~~~~l~es~~I~~yl~~ 75 (75)
..+..++||..|.+|+.+
T Consensus 153 ~ad~lIaDs~~I~~y~~~ 170 (185)
T PF09314_consen 153 YADRLIADSKGIQDYIKE 170 (185)
T ss_pred hCCEEEEcCHHHHHHHHH
Confidence 345689999999999863
No 364
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.03 E-value=1.4e+02 Score=19.98 Aligned_cols=35 Identities=9% Similarity=-0.036 Sum_probs=30.6
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.+.||+-++|+-+.-++++....+.+|........
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~ 84 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS 84 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence 47899999999999999999999999988765544
No 365
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=34.98 E-value=46 Score=18.32 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=26.2
Q ss_pred eEEEee--CCChhHHHH--------HHHHHhcCCc-eEEEEecCCCCcHHHhhhCCCCCcccEEEeCCE
Q 038935 4 VKLLGT--WPSSFCYRV--------IWALKLKGVE-YEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGR 61 (75)
Q Consensus 4 ~~ly~~--~~~p~~~~~--------~~~l~~~gi~-~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~ 61 (75)
+.||.+ .+||.|..= .-.++.+|+. +--+..+......+|.+.......+|.|-|.+.
T Consensus 32 vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~ 100 (155)
T cd03013 32 VVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNG 100 (155)
T ss_pred EEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCH
Confidence 344444 457777653 3334444552 333333322234444443332014677766543
No 366
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=34.44 E-value=98 Score=18.03 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=24.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+.++..++-+|..-++.++++.|.|+-....|..
T Consensus 64 v~vi~tpG~GYv~Dl~~al~~l~~P~lvvsaDLp 97 (177)
T COG2266 64 VKVIETPGEGYVEDLRFALESLGTPILVVSADLP 97 (177)
T ss_pred ceEEEcCCCChHHHHHHHHHhcCCceEEEecccc
Confidence 4566677777777777777777777776666655
No 367
>PRK06703 flavodoxin; Provisional
Probab=34.18 E-value=81 Score=17.03 Aligned_cols=35 Identities=14% Similarity=-0.040 Sum_probs=22.0
Q ss_pred CcceEEEeeCCChhHHHHHHH----HHhcCCceEEEEec
Q 038935 1 MEEVKLLGTWPSSFCYRVIWA----LKLKGVEYEYVEVN 35 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~----l~~~gi~~~~~~v~ 35 (75)
|.++.+.+++..+.++++--. |...|++.+..+++
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 556677667677887765433 44557777665543
No 368
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=33.90 E-value=68 Score=16.63 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=14.9
Q ss_pred CCChhH--HHH-HHHHHhcCCceE
Q 038935 10 WPSSFC--YRV-IWALKLKGVEYE 30 (75)
Q Consensus 10 ~~~p~~--~~~-~~~l~~~gi~~~ 30 (75)
+.|||. ... +...++.||++.
T Consensus 71 PkCpy~~~eei~Kk~ie~~~i~Vv 94 (101)
T COG5561 71 PKCPYASAEEIAKKEIEKMGIKVV 94 (101)
T ss_pred CCCCccCHHHHHHHHHHHhCCcEE
Confidence 678876 443 777888888765
No 369
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=33.87 E-value=66 Score=17.56 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCceEEEEecC
Q 038935 17 RVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~~v~~ 36 (75)
.+.-+|+++|++|+.+..+.
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~ 22 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEH 22 (152)
T ss_pred HHHHHHHHcCCCeEEEeecC
Confidence 46678999999999988664
No 370
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=33.84 E-value=60 Score=19.96 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.1
Q ss_pred EEeeCCChhHHHHHHHHHh-cCCc
Q 038935 6 LLGTWPSSFCYRVIWALKL-KGVE 28 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~-~gi~ 28 (75)
|+....||.++++|-.|+. +|++
T Consensus 169 i~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 169 LAKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred eecccCChHHHHHHHHHHHhhCCC
Confidence 5667789999999999998 7886
No 371
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=33.76 E-value=1e+02 Score=20.42 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=26.3
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
+-||+-++|+-+..++.++.+.|+++-....
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa 181 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSA 181 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence 3478889999999999999999999865543
No 372
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=33.56 E-value=88 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=27.1
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
+-||+..+++-+.-+|-+|++.+++......
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~ 63 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNLENVWLNC 63 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCCcceeeeh
Confidence 4789999999999999999999988776654
No 373
>PRK10670 hypothetical protein; Provisional
Probab=33.37 E-value=78 Score=17.66 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCceEEEEecCC
Q 038935 17 RVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.+..+|+..+++|+.+.++.+
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~ 23 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHD 23 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccC
Confidence 356789999999999776654
No 374
>PRK10444 UMP phosphatase; Provisional
Probab=33.36 E-value=1e+02 Score=18.52 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhh-hCCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQ-LNPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~-~~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
.|.+..+.-.|+.+|+++...-=+......++.+ .... | +++ ..+..++-+.+.++||.
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~-G-~~~--~~~~i~ts~~~~~~~L~ 78 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATA-G-VDV--PDSVFYTSAMATADFLR 78 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-C-CCC--CHhhEecHHHHHHHHHH
Confidence 4556666677888888887554443333444442 3333 2 442 34556777777777775
No 375
>COG4803 Predicted membrane protein [Function unknown]
Probab=33.36 E-value=54 Score=18.70 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=25.5
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
|+.++++.|+.-.-+..+|..+..+.-+|-
T Consensus 3 Ms~Livi~f~~e~~Aeev~~~l~~LqkE~L 32 (170)
T COG4803 3 MSDLIVIAFDDEDKAEEVRERLNELQKEYL 32 (170)
T ss_pred hhheEEEEcCCcchHHHHHHHHHHhhHHHh
Confidence 778899999988889999999988876654
No 376
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=33.05 E-value=79 Score=16.52 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=24.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
+++.+.++|+-+.-++.+.+..|+++-..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 56788899999999999999999987543
No 377
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=32.82 E-value=56 Score=14.73 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHhcCCceEEEEe
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
..++.....+|+..|||-..+.-
T Consensus 10 ~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 10 GEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred HHHHHHHHHHHHHCCCCeEEEee
Confidence 35677788899999999887643
No 378
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=32.47 E-value=88 Score=16.91 Aligned_cols=27 Identities=7% Similarity=-0.116 Sum_probs=22.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
+++.+.++|+-+.-++.+.+..|+++-
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 788889999999999988888888754
No 379
>PLN02412 probable glutathione peroxidase
Probab=32.30 E-value=66 Score=17.91 Aligned_cols=12 Identities=0% Similarity=-0.352 Sum_probs=8.9
Q ss_pred EeeCCChhHHHH
Q 038935 7 LGTWPSSFCYRV 18 (75)
Q Consensus 7 y~~~~~p~~~~~ 18 (75)
|..++||+|.+-
T Consensus 36 f~a~~C~~c~~e 47 (167)
T PLN02412 36 NVASKCGLTDSN 47 (167)
T ss_pred EeCCCCCChHHH
Confidence 446889999863
No 380
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=32.28 E-value=63 Score=17.48 Aligned_cols=14 Identities=7% Similarity=-0.114 Sum_probs=9.6
Q ss_pred EEeeCCChhHHHHH
Q 038935 6 LLGTWPSSFCYRVI 19 (75)
Q Consensus 6 ly~~~~~p~~~~~~ 19 (75)
.+..++||.|.+-.
T Consensus 28 ~~~as~C~~c~~~~ 41 (153)
T TIGR02540 28 VNVASECGFTDQNY 41 (153)
T ss_pred EEeCCCCCchhhhH
Confidence 45567899997643
No 381
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.99 E-value=76 Score=22.45 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=26.8
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
-+-+|+-++|+-+..+|.+.++.+.+|-.+
T Consensus 470 GVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred eEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 366899999999999999999999999866
No 382
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=31.37 E-value=64 Score=16.61 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHhcCCceEEEEec
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVN 35 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~ 35 (75)
++|..++.-.|++.|++|+.....
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm~ 41 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPMG 41 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCCc
Confidence 678888999999999999976543
No 383
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=31.35 E-value=75 Score=19.84 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.3
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCce
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEY 29 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~ 29 (75)
.+.+|.-..--++-++.|+|+..|.+=
T Consensus 92 tVVvYdd~~~~~A~ra~W~l~~~Gh~~ 118 (285)
T COG2897 92 TVVVYDDGGGFFAARAWWLLRYLGHEN 118 (285)
T ss_pred EEEEECCCCCeehHHHHHHHHHcCCCc
Confidence 367777777778999999999999874
No 384
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=31.22 E-value=59 Score=15.56 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=9.7
Q ss_pred CcccEEEeCCEEe
Q 038935 51 KQVPVLVHGGRPV 63 (75)
Q Consensus 51 ~~vP~l~~~~~~l 63 (75)
.++|+|.+++..+
T Consensus 38 ~~~Pll~~~~~iv 50 (74)
T PF11734_consen 38 DRLPLLCDGGEIV 50 (74)
T ss_dssp CCSEEEEETTEEE
T ss_pred CcEEEEEECCEEE
Confidence 4689998887654
No 385
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.09 E-value=71 Score=20.85 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=20.7
Q ss_pred CCChhHHHHHHHHHhcCCceEEEE
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
..|+.|++.+.+|+..||+.+...
T Consensus 179 ~ns~~~e~l~~v~aq~~I~v~~~e 202 (431)
T COG4408 179 GNSGSAEMLTAVLAQHGIDVEPCE 202 (431)
T ss_pred CCChHHHHHHHHHHhcCCceEEcC
Confidence 568999999999999999987653
No 386
>PRK07308 flavodoxin; Validated
Probab=30.96 E-value=93 Score=16.71 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=22.5
Q ss_pred CcceEEEeeCCChhHHHHH----HHHHhcCCceEEEEec
Q 038935 1 MEEVKLLGTWPSSFCYRVI----WALKLKGVEYEYVEVN 35 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~----~~l~~~gi~~~~~~v~ 35 (75)
|.++.+.+++..+.++++- -.|...|++.+..+++
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 6777777777777777643 3445567776665543
No 387
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=30.90 E-value=1.1e+02 Score=19.97 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=24.9
Q ss_pred ceEEEeeCCC---------hhHHHHHHHHHhcCCceEEEEecCC
Q 038935 3 EVKLLGTWPS---------SFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 3 ~~~ly~~~~~---------p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
++|+|..+.- -|-+-|+=+|...||+|+.+.-+..
T Consensus 69 KlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rq 112 (382)
T PF11711_consen 69 KLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQ 112 (382)
T ss_pred eEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccc
Confidence 7888888542 2334567788899999998865543
No 388
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=30.88 E-value=9.6 Score=17.74 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=6.9
Q ss_pred eeCCChhHHH
Q 038935 8 GTWPSSFCYR 17 (75)
Q Consensus 8 ~~~~~p~~~~ 17 (75)
.+++||+|.+
T Consensus 38 rYngCPfC~~ 47 (55)
T PF14447_consen 38 RYNGCPFCGT 47 (55)
T ss_pred hccCCCCCCC
Confidence 4567888864
No 389
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=30.84 E-value=90 Score=16.52 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=24.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
+.|.+.++|+-+.-++.+.+..|.++-..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 67889999999999999999999886544
No 390
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.81 E-value=1.1e+02 Score=18.35 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=18.3
Q ss_pred eEEEeeCCChhHHHHHH----HHHhcCCceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIW----ALKLKGVEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~----~l~~~gi~~~~~~v 34 (75)
+.....|.|++|.=+-- +-+..|+++..+.=
T Consensus 4 lhYifDPmCgWCyGa~Pll~~l~~~~gl~~~L~~G 38 (212)
T COG3531 4 LHYIFDPMCGWCYGAAPLLEALSAQPGLEVVLHGG 38 (212)
T ss_pred eEEecCcchhhhhCccHHHHHHHhcCCceEEEecC
Confidence 33344578999984332 22334888887743
No 391
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.75 E-value=36 Score=20.98 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=13.4
Q ss_pred ceEEEeeCCChhHHHHH
Q 038935 3 EVKLLGTWPSSFCYRVI 19 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~ 19 (75)
+.|||+.+.||+..---
T Consensus 155 kpTLyylPHcp~~LyeN 171 (281)
T KOG3131|consen 155 KPTLYYLPHCPYALYEN 171 (281)
T ss_pred ceeeEecCCCchHHHHH
Confidence 57999999999876433
No 392
>PRK00131 aroK shikimate kinase; Reviewed
Probab=30.55 E-value=96 Score=16.73 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=25.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
.+-|.+.++|+-+.-++.+.+..|.++-..
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 367888899999999999999999877644
No 393
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=30.52 E-value=42 Score=23.64 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=37.7
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEeC-----C------EEeecHHHH
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVHG-----G------RPVAESMVI 69 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~-----~------~~l~es~~I 69 (75)
+|++ ..-+|+..--+|..+|++-.....-++- ........... +.+++++.. | .+++||.|+
T Consensus 445 VFT~-SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 445 VFTY-SRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred EEec-chhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 3444 3468999999999888876655544441 22222233444 578888742 2 457777765
No 394
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=30.13 E-value=56 Score=14.65 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=15.5
Q ss_pred ccEEEeCCEEeecHHHHHHhHh
Q 038935 53 VPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 53 vP~l~~~~~~l~es~~I~~yl~ 74 (75)
-|++...| .+++-..|.+|+.
T Consensus 13 ~Pv~~~~G-~v~~~~~i~~~~~ 33 (63)
T smart00504 13 DPVILPSG-QTYERRAIEKWLL 33 (63)
T ss_pred CCEECCCC-CEEeHHHHHHHHH
Confidence 47766555 7888888888875
No 395
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=30.04 E-value=1.1e+02 Score=17.29 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=11.2
Q ss_pred EEeeCCChhHHHHHHHHH
Q 038935 6 LLGTWPSSFCYRVIWALK 23 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~ 23 (75)
+|..|.|++|+...-.+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~ 19 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELR 19 (176)
T ss_dssp EEE-TT-HHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHH
Confidence 577899999996654333
No 396
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=30.02 E-value=67 Score=16.32 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=17.8
Q ss_pred ChhHHHHHHHHHhcCCceEEEE
Q 038935 12 SSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
+++..++.-.|+..|++|+...
T Consensus 16 ~~~V~~~i~~i~~sgl~y~v~p 37 (92)
T PF01910_consen 16 SAYVAEAIEVIKESGLKYEVGP 37 (92)
T ss_dssp HHHHHHHHHHHHTSSSEEEEET
T ss_pred HHHHHHHHHHHHHcCCceEEcC
Confidence 4667788888999999998764
No 397
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.02 E-value=76 Score=16.12 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHhcCCceEEEEec
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVN 35 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~ 35 (75)
+-.+.+++-.+++.|++++....+
T Consensus 17 S~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 17 SLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEec
Confidence 345678899999999998876554
No 398
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=29.74 E-value=82 Score=18.34 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=20.5
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
||+.-....+..+...|.+.||+|+.
T Consensus 22 Ly~~L~~~da~~I~~~L~~~gI~y~~ 47 (193)
T TIGR02544 22 LYSGLSEREANEMLAVLMRHGIDAEK 47 (193)
T ss_pred cccCCCHHHHHHHHHHHHHCCCCeEE
Confidence 35554555678899999999999987
No 399
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=29.30 E-value=74 Score=17.22 Aligned_cols=16 Identities=6% Similarity=-0.278 Sum_probs=9.9
Q ss_pred EeeCCChhHHHHHHHHH
Q 038935 7 LGTWPSSFCYRVIWALK 23 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l~ 23 (75)
|...+|| |.+-.-.|.
T Consensus 29 fwatwC~-C~~e~p~l~ 44 (152)
T cd00340 29 NVASKCG-FTPQYEGLE 44 (152)
T ss_pred EEcCCCC-chHHHHHHH
Confidence 5567899 876433333
No 400
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=29.25 E-value=79 Score=17.13 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCceEEEEecC
Q 038935 16 YRVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 16 ~~~~~~l~~~gi~~~~~~v~~ 36 (75)
+++.-+|+..|++|+......
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPE 22 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCC
Confidence 578889999999999888774
No 401
>PRK02551 flavoprotein NrdI; Provisional
Probab=29.19 E-value=62 Score=18.22 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=16.6
Q ss_pred CcceEEEeeCCChhHHHHHHHHH
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALK 23 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~ 23 (75)
|.++++|+.+.++.+++----|.
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~ 23 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLS 23 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHh
Confidence 77888999988887776543343
No 402
>PRK13190 putative peroxiredoxin; Provisional
Probab=29.09 E-value=71 Score=18.46 Aligned_cols=16 Identities=13% Similarity=0.028 Sum_probs=9.7
Q ss_pred EeeCCChhHHHHHHHH
Q 038935 7 LGTWPSSFCYRVIWAL 22 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l 22 (75)
|-..+||.|..=...|
T Consensus 35 ~p~~~cp~C~~El~~l 50 (202)
T PRK13190 35 HPADFTPVCTTEFIAF 50 (202)
T ss_pred EcCCCCCCCHHHHHHH
Confidence 3446899998543333
No 403
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.94 E-value=88 Score=15.79 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCceEEEEecCC
Q 038935 15 CYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 15 ~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
..+++-+|+++|++++....+..
T Consensus 20 ~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 20 AEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred HHHHHHHHHHCCCeEEEEEecHH
Confidence 46778999999999887776543
No 404
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.87 E-value=80 Score=21.36 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCCceEEEEecCCC-CcHHHhhhCCCCCcccEEEe
Q 038935 14 FCYRVIWALKLKGVEYEYVEVNIHN-KSELLLQLNPVHKQVPVLVH 58 (75)
Q Consensus 14 ~~~~~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~ 58 (75)
.+-.+-.+|...|.+++.+..+... ..+.-++.+.. |+.|+|+.
T Consensus 349 ~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pvlVa 393 (482)
T KOG0335|consen 349 GADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPVLVA 393 (482)
T ss_pred hhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcceEEE
Confidence 4556778888899999988887663 45555667777 79999984
No 405
>COG5279 CYK3 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning]
Probab=28.84 E-value=96 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=22.8
Q ss_pred EeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 7 LGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
|-.-+.||++..+.+++..|||.+.++
T Consensus 208 heavCtgYa~lfK~lcn~lgIp~~iIe 234 (521)
T COG5279 208 HEAVCTGYAELFKELCNALGIPCEIIE 234 (521)
T ss_pred cccccchHHHHHHHHHHhcCCceEEEe
Confidence 555677999999999999999988763
No 406
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=28.45 E-value=1.3e+02 Score=17.42 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=18.8
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|.-.+.||+-. -+|+..|++|+.+..+.+
T Consensus 5 lILAS~SprR~---elL~~~g~~f~v~~~~id 33 (183)
T TIGR00172 5 LILASQSPRRK---ELLEELGISFEQIVSEFD 33 (183)
T ss_pred EEEeCCCHHHH---HHHHHCCCCeEEEcCCCC
Confidence 44445566433 347888999998766554
No 407
>PTZ00256 glutathione peroxidase; Provisional
Probab=28.44 E-value=87 Score=17.69 Aligned_cols=13 Identities=0% Similarity=-0.194 Sum_probs=9.5
Q ss_pred EEeeCCChhHHHH
Q 038935 6 LLGTWPSSFCYRV 18 (75)
Q Consensus 6 ly~~~~~p~~~~~ 18 (75)
++...+||.|.+-
T Consensus 47 ~n~atwCp~C~~e 59 (183)
T PTZ00256 47 VNVACKCGLTSDH 59 (183)
T ss_pred EEECCCCCchHHH
Confidence 3456789999963
No 408
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.41 E-value=48 Score=20.51 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=18.2
Q ss_pred hCCCCCcccEEEeCCEEeecHHHHHHhH
Q 038935 46 LNPVHKQVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 46 ~~p~~~~vP~l~~~~~~l~es~~I~~yl 73 (75)
+.|. .=|++..+| .|++--+|++|+
T Consensus 50 LqPc--~dPvit~~G-ylfdrEaILe~i 74 (303)
T KOG3039|consen 50 LQPC--RDPVITPDG-YLFDREAILEYI 74 (303)
T ss_pred cccc--cCCccCCCC-eeeeHHHHHHHH
Confidence 3454 357766665 889999999987
No 409
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=28.31 E-value=1e+02 Score=16.27 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhcCCceEEEEecCCCCcHHHh
Q 038935 14 FCYRVIWALKLKGVEYEYVEVNIHNKSELLL 44 (75)
Q Consensus 14 ~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~ 44 (75)
|.+..+-..+..|+.++.+.+.......++.
T Consensus 46 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 76 (117)
T PF00763_consen 46 YVRSKQKAAEKLGIEFELIELPEDISEEELL 76 (117)
T ss_dssp HHHHHHHHHHHHT-EEEEEEE-TTSSHHHHH
T ss_pred HHHHHHHHHHHcCCceEEEECCCCcCHHHHH
Confidence 6667778889999999999987665555554
No 410
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=27.97 E-value=83 Score=19.45 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHhcCCceEEEEecCCCC-------cHHHhhhCCCCCcccEEEe--CCEE
Q 038935 18 VIWALKLKGVEYEYVEVNIHNK-------SELLLQLNPVHKQVPVLVH--GGRP 62 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~~-------~~~~~~~~p~~~~vP~l~~--~~~~ 62 (75)
+.-+++..|+++++..++..+. .+-|.--+.. +-+|+-.. |+..
T Consensus 224 vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~-gi~PV~~i~~d~~~ 276 (313)
T TIGR01123 224 LLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAA-VITPVGEIQHGGKE 276 (313)
T ss_pred HHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCce-EEEEEEEEEECCeE
Confidence 3446778899999999987641 1223333344 57899875 6643
No 411
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=27.93 E-value=91 Score=15.71 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=21.6
Q ss_pred CCChh-HHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCC
Q 038935 10 WPSSF-CYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNP 48 (75)
Q Consensus 10 ~~~p~-~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p 48 (75)
+-.|. ...+..+.+++||||..+ +...++.+..+
T Consensus 38 Da~~~vv~~l~~lceek~Ip~v~V-----~s~~~LGkAcg 72 (84)
T PRK13600 38 DVEVYLMTRVLSQINQKNIPVSFF-----KSKHALGKHVG 72 (84)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-----CCHHHHHHHhC
Confidence 34443 446778889999999865 23455554443
No 412
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=27.82 E-value=98 Score=18.75 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHh-hhCCCCCcccEEE-eCCEEeecHHHHHHhH
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLL-QLNPVHKQVPVLV-HGGRPVAESMVILEYI 73 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~-~~~~~l~es~~I~~yl 73 (75)
+||....--+|...|+++-.+ -+.+-....++ ..... ..|++. .+...+.|-...++.+
T Consensus 75 tpfd~~s~d~l~~~~~~~~KI-aS~dl~n~~lL~~~A~t--gkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 75 TPFDEESVDFLEELGVPAYKI-ASGDLTNLPLLEYIAKT--GKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp EE-SHHHHHHHHHHT-SEEEE--GGGTT-HHHHHHHHTT---S-EEEE-TT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEe-ccccccCHHHHHHHHHh--CCcEEEECCCCCHHHHHHHHHHH
Confidence 566667777778888886533 22222334454 34433 479998 5667777766655554
No 413
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=27.66 E-value=1.1e+02 Score=16.67 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCceEEEEecC
Q 038935 16 YRVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 16 ~~~~~~l~~~gi~~~~~~v~~ 36 (75)
++++-+|+.+|++|+.+....
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (156)
T cd04335 2 DELLALLDELGIAYETVEHPP 22 (156)
T ss_pred hHHHHHHHHCCCceEEEecCC
Confidence 467788999999999877654
No 414
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=27.29 E-value=98 Score=15.79 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=29.9
Q ss_pred EEeeCCChhHHHH-HHHHHhcCC------ceEEEEecCCC-CcHHHhhhCCCCCcccEEE
Q 038935 6 LLGTWPSSFCYRV-IWALKLKGV------EYEYVEVNIHN-KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 6 ly~~~~~p~~~~~-~~~l~~~gi------~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~ 57 (75)
.++.++|++|.+. +-.|....+ .|....++... ...++....+. ..+|++.
T Consensus 23 ~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~-~~~P~~~ 81 (114)
T cd02958 23 YLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKV-DKYPHIA 81 (114)
T ss_pred EEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCc-cCCCeEE
Confidence 4556789999875 334433322 35555555543 34556665666 4799886
No 415
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=27.14 E-value=1.1e+02 Score=16.13 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=16.7
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCc
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVE 28 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~ 28 (75)
+.+|......++.++.++|+..|..
T Consensus 89 vvvyC~~~G~rs~~a~~~L~~~G~~ 113 (128)
T cd01520 89 LLIYCARGGMRSQSLAWLLESLGID 113 (128)
T ss_pred EEEEeCCCCccHHHHHHHHHHcCCc
Confidence 4455543445777888888888874
No 416
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.03 E-value=62 Score=18.65 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=22.1
Q ss_pred eEEEeeCCChhHHHHHHHH---HhcCCceEEEEecC
Q 038935 4 VKLLGTWPSSFCYRVIWAL---KLKGVEYEYVEVNI 36 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l---~~~gi~~~~~~v~~ 36 (75)
+-|++|..||.+.|++.+- +..+...+....+.
T Consensus 3 lYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l 38 (187)
T PF05728_consen 3 LYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDL 38 (187)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCC
Confidence 4588999999998886544 44566665544443
No 417
>PRK00279 adk adenylate kinase; Reviewed
Probab=26.94 E-value=1.3e+02 Score=17.27 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=23.6
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
+.+++.++|+-+.-++.+.+..|+++-
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~i 29 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 788999999999999999988887654
No 418
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=26.71 E-value=74 Score=14.64 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=14.9
Q ss_pred cccEEEeCCEEeecHHHHHHhH
Q 038935 52 QVPVLVHGGRPVAESMVILEYI 73 (75)
Q Consensus 52 ~vP~l~~~~~~l~es~~I~~yl 73 (75)
+-|+.-..=.+++|-.+|.+||
T Consensus 22 ~~PV~s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 22 EDPVKSKKCGHTFEKEAILQYI 43 (57)
T ss_dssp SSEEEESSS--EEEHHHHHHHC
T ss_pred hCCcCcCCCCCeecHHHHHHHH
Confidence 3566544447899999999998
No 419
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=26.69 E-value=1e+02 Score=19.44 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=26.0
Q ss_pred C--CceEEEEecCCC--CcHH-HhhhCCCCCcccEEEeCCEEee
Q 038935 26 G--VEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVHGGRPVA 64 (75)
Q Consensus 26 g--i~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~~~~~l~ 64 (75)
| +++++..+...+ ..++ |.--+-. |-+|+...||..+.
T Consensus 261 G~~i~V~E~~i~~~eL~~AdEvFltnS~~-gv~PV~~id~~~~~ 303 (336)
T PLN02845 261 GDLRGVKQRKISVEEAKAADEMMLIGSGV-PVLPIVSWDGQPIG 303 (336)
T ss_pred CCceEEEEEecCHHHHhcCCEEEEecCcc-cEEEEEEECCEECC
Confidence 7 899998888753 3333 4433445 68899998887764
No 420
>PLN02782 Branched-chain amino acid aminotransferase
Probab=26.41 E-value=1.1e+02 Score=20.09 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHHhcCCceEEEEecCCC--CcHH-HhhhCCCCCcccEEEe--CCEEe
Q 038935 18 VIWALKLKGVEYEYVEVNIHN--KSEL-LLQLNPVHKQVPVLVH--GGRPV 63 (75)
Q Consensus 18 ~~~~l~~~gi~~~~~~v~~~~--~~~~-~~~~~p~~~~vP~l~~--~~~~l 63 (75)
+.-+++..|+++++..++.++ ...| |.--... +-.|+-.. +|..+
T Consensus 317 vlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~-~V~PV~~I~~~g~~~ 366 (403)
T PLN02782 317 IIDVARSQGFQVEERNVTVDELLEADEVFCTGTAV-VVSPVGSITYKGKRV 366 (403)
T ss_pred HHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcc-eEEEEEEEEECCEEE
Confidence 344677789999999998753 2223 3322333 56798865 67655
No 421
>PRK15000 peroxidase; Provisional
Probab=26.37 E-value=1.3e+02 Score=17.39 Aligned_cols=16 Identities=13% Similarity=-0.108 Sum_probs=9.5
Q ss_pred eEEEeeC--CChhHHHHH
Q 038935 4 VKLLGTW--PSSFCYRVI 19 (75)
Q Consensus 4 ~~ly~~~--~~p~~~~~~ 19 (75)
+.|+.++ +||.|..-.
T Consensus 37 vvL~F~p~~~t~vC~~El 54 (200)
T PRK15000 37 TVLFFWPMDFTFVCPSEL 54 (200)
T ss_pred EEEEEECCCCCCCCHHHH
Confidence 3445554 688888643
No 422
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=99 Score=18.11 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=12.3
Q ss_pred eEEEeeCCChhHHHHHHHHHh
Q 038935 4 VKLLGTWPSSFCYRVIWALKL 24 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~ 24 (75)
+..|....||+|.+..-.+..
T Consensus 88 v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 88 VVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred EEEEecCcCccHHHHHHHHHH
Confidence 455666778888555443333
No 423
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=26.22 E-value=1.9e+02 Score=19.93 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 11 PSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.-|.+.++...|+..|++|+.......
T Consensus 422 d~~~~~~~~~~l~~~g~~~~~~v~sah 448 (577)
T PLN02948 422 DLPTMKDAAEILDSFGVPYEVTIVSAH 448 (577)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 347899999999999999997766643
No 424
>PF04641 Rtf2: Rtf2 RING-finger
Probab=26.06 E-value=83 Score=19.09 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCCCcccEEEeCCEEeecHHHHHHhHh
Q 038935 47 NPVHKQVPVLVHGGRPVAESMVILEYIE 74 (75)
Q Consensus 47 ~p~~~~vP~l~~~~~~l~es~~I~~yl~ 74 (75)
.|+ ..|++-+.-..|++-.+|++||-
T Consensus 42 ~pL--~~PiV~d~~G~LynKeaile~Ll 67 (260)
T PF04641_consen 42 QPL--EDPIVSDRLGRLYNKEAILEFLL 67 (260)
T ss_pred Ccc--CCCeeeCCCCeeEcHHHHHHHHH
Confidence 455 46998888889999999999984
No 425
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.75 E-value=91 Score=16.26 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHhcCCceEEEEec
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVN 35 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~ 35 (75)
|-.+.+++-+++++|++++....+
T Consensus 15 Slla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 15 SMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred HHHHHHHHHHHHHCCCceEEEEec
Confidence 345678899999999998775443
No 426
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=25.72 E-value=1.4e+02 Score=17.07 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeec
Q 038935 13 SFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAE 65 (75)
Q Consensus 13 p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 65 (75)
+....+...|.++|+++-..-=........+.+..+. ...|++..+|..+.+
T Consensus 19 ~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~-~~~~~I~~NGa~i~~ 70 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL-TGDPYIAENGAAIHL 70 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-CCCcEEEeCCcEEEc
Confidence 4456666777888988864422221222223333332 124777777766654
No 427
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=25.44 E-value=2.3e+02 Score=19.59 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=25.8
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
+|-+|.+|+-...+.+.....|-.|..+.||..
T Consensus 362 viltyg~s~vV~~ill~A~~~~k~frVvVVDSR 394 (556)
T KOG1467|consen 362 VLLTYGSSSVVNMILLEAKELGKKFRVVVVDSR 394 (556)
T ss_pred EEEEecchHHHHHHHHHHHHhCcceEEEEEeCC
Confidence 456677788888888888888888888888865
No 428
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=25.28 E-value=1.6e+02 Score=19.87 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=36.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVH 58 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 58 (75)
-.+|+.|--.|.-+..--|++.|++|..-...+......--+...- |-+=+|.+
T Consensus 388 ~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~e-g~vKvl~d 441 (506)
T KOG1335|consen 388 SVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTE-GFVKVLAD 441 (506)
T ss_pred ceeecccceeeeccchhhHHhcCcceEeeeccccccchhhccCCcc-ceeEEEec
Confidence 3577887777888889999999999998877765433222222222 44556654
No 429
>PRK09864 putative peptidase; Provisional
Probab=25.08 E-value=2e+02 Score=18.59 Aligned_cols=42 Identities=5% Similarity=-0.005 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 14 FCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 14 ~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
..+.++-+.++.||||+................... .+|++.
T Consensus 266 l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~--Gvpt~~ 307 (356)
T PRK09864 266 LVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGG--GRPVVA 307 (356)
T ss_pred HHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCC--CCcEEE
Confidence 355777888999999997655433322333334433 378765
No 430
>PTZ00088 adenylate kinase 1; Provisional
Probab=25.07 E-value=1.6e+02 Score=17.59 Aligned_cols=29 Identities=10% Similarity=-0.113 Sum_probs=24.8
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
++.|.+.++|+-+..++.+.+..|+++-.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 37889999999999999999998987643
No 431
>PRK00032 Maf-like protein; Reviewed
Probab=25.04 E-value=1.5e+02 Score=17.23 Aligned_cols=29 Identities=24% Similarity=0.067 Sum_probs=18.6
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|.-.+.||+-+ -+|+..|++|+.+..+.+
T Consensus 4 iILAS~SprR~---elL~~~g~~f~v~~~~id 32 (190)
T PRK00032 4 LYLASGSPRRR---ELLTQLGVPFEVLVPGIE 32 (190)
T ss_pred EEEeCCCHHHH---HHHHHCCCCeEEEcCCCC
Confidence 33345566443 347889999998766554
No 432
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=25.02 E-value=1.1e+02 Score=16.91 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCceEEEE
Q 038935 15 CYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 15 ~~~~~~~l~~~gi~~~~~~ 33 (75)
++.++-+|+..||+++...
T Consensus 77 S~~Al~~L~~~gI~v~y~~ 95 (134)
T PF08973_consen 77 SEPALDLLEEAGIKVSYDE 95 (134)
T ss_dssp EHHHHHHHHHTT--EEEEE
T ss_pred hHHHHHHHHHcCCceeHhh
Confidence 5678889999999987654
No 433
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=24.87 E-value=1.5e+02 Score=17.23 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=21.0
Q ss_pred CcceEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 1 MEEVKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
|.++-++........+.+.-++...++..+..-
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~ 33 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVA 33 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEE
Confidence 555666666556666666677777776655543
No 434
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=24.74 E-value=1.5e+02 Score=17.01 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=20.3
Q ss_pred CcceEEEeeCCChhHHHHH----HHHHh-cCCceEEEEec
Q 038935 1 MEEVKLLGTWPSSFCYRVI----WALKL-KGVEYEYVEVN 35 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~~----~~l~~-~gi~~~~~~v~ 35 (75)
|.++.+.+++..+.++++- -.+++ .|++++.+++.
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 5455555554456666543 33333 67888877775
No 435
>PF09019 EcoRII-C: EcoRII C terminal; InterPro: IPR015109 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C-terminal catalytic domain of the type II restriction endonuclease EcoRII, which has a restriction endonuclease-like fold with a central five-stranded mixed beta-sheet surrounded on both sides by alpha-helices. EcoRII cleaves DNA specifically at single 5' CCWGG sites []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 3HQG_A 1NA6_A 2GB7_C 2FQZ_A 3BM3_B.
Probab=24.55 E-value=25 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCceEEEEecCCCCcHHH
Q 038935 16 YRVIWALKLKGVEYEYVEVNIHNKSELL 43 (75)
Q Consensus 16 ~~~~~~l~~~gi~~~~~~v~~~~~~~~~ 43 (75)
.-+..+|...||+|+...+....+.++|
T Consensus 44 ~hi~~il~~~gi~~~~q~~te~~kkpDf 71 (164)
T PF09019_consen 44 NHIEFILMENGIPFETQAVTENKKKPDF 71 (164)
T ss_dssp HHHHHHHHHTT---EESG-CSTCCTESE
T ss_pred HHHHHHHHHcCCCccccccccCCCCCCe
Confidence 3567789999999997766644444443
No 436
>PRK00234 Maf-like protein; Reviewed
Probab=24.38 E-value=1.6e+02 Score=17.16 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=18.6
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|.-.+.||+-. -+|+..|++|+.+..+.+
T Consensus 4 iILAS~SprR~---elL~~~gi~f~v~~~~iD 32 (192)
T PRK00234 4 LLLASSSPYRR---ELLARLRLPFTWASPDID 32 (192)
T ss_pred EEEecCCHHHH---HHHHHCCCCcEEECCCCC
Confidence 33344566433 448889999997765554
No 437
>PRK13946 shikimate kinase; Provisional
Probab=24.28 E-value=1.4e+02 Score=16.71 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=26.4
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
.+.|.+.++|+=+.-.+.+.+..|.+|-..+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4678889999999999999999999976554
No 438
>PRK14530 adenylate kinase; Provisional
Probab=24.21 E-value=1.5e+02 Score=17.02 Aligned_cols=28 Identities=21% Similarity=0.022 Sum_probs=23.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
.+-+.+.++|+-+.-++.+.+..|+++-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4677889999999999999999998765
No 439
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.77 E-value=1.4e+02 Score=16.43 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEecCCC----CcHHHhhhCCCCCcccEEE
Q 038935 10 WPSSFCYRVIWALKLKGVEYEYVEVNIHN----KSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 10 ~~~p~~~~~~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~ 57 (75)
+.-|-....+..++.+|+.|..++|.... .-..|.+.-.- ..=|+|.
T Consensus 42 ~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~e-aegPVla 92 (130)
T COG3453 42 PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDE-AEGPVLA 92 (130)
T ss_pred CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHH-hCCCEEe
Confidence 34577788899999999999999998753 33445432222 2458886
No 440
>PRK13189 peroxiredoxin; Provisional
Probab=23.73 E-value=1.5e+02 Score=17.45 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=6.9
Q ss_pred eeCCChhHHH
Q 038935 8 GTWPSSFCYR 17 (75)
Q Consensus 8 ~~~~~p~~~~ 17 (75)
-..+||.|..
T Consensus 44 pa~fcpvC~t 53 (222)
T PRK13189 44 PADFTPVCTT 53 (222)
T ss_pred CCCCCCCCHH
Confidence 3467888875
No 441
>PRK04425 Maf-like protein; Reviewed
Probab=23.54 E-value=1.7e+02 Score=17.17 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=20.0
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
.++.-.+.||+-. -+|+..|++|+.+..+.+
T Consensus 5 ~~iILAS~SprR~---elL~~~g~~f~v~~~~iD 35 (196)
T PRK04425 5 LPLVLGTSSVFRR---EQMERLGIAFQAASPDFD 35 (196)
T ss_pred CcEEEeCCCHHHH---HHHHHCCCCeEEECCCCC
Confidence 3445555666433 347889999998766554
No 442
>PRK13337 putative lipid kinase; Reviewed
Probab=23.52 E-value=1.9e+02 Score=17.78 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=28.5
Q ss_pred CcceEEEeeCCChhHH------HHHHHHHhcCCceEEEEecCCCCcHHHh
Q 038935 1 MEEVKLLGTWPSSFCY------RVIWALKLKGVEYEYVEVNIHNKSELLL 44 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~------~~~~~l~~~gi~~~~~~v~~~~~~~~~~ 44 (75)
|.++.+...+.++... .+.-.|.+.|++|+.+.........++.
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a 50 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAA 50 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHH
Confidence 5556666666665432 2345788899999887777555455544
No 443
>PRK14367 Maf-like protein; Provisional
Probab=23.44 E-value=1.7e+02 Score=17.21 Aligned_cols=29 Identities=17% Similarity=-0.017 Sum_probs=18.3
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|.-.+.||+-.. +|+..|++|+.+..+.+
T Consensus 4 iILAS~SprR~e---LL~~~Gi~f~v~~~~iD 32 (202)
T PRK14367 4 LYLGSNSPRRME---ILTQLGYRVVKLPAGID 32 (202)
T ss_pred EEEeCCCHHHHH---HHHHCCCCeEEECCCCC
Confidence 444455664433 37889999987765544
No 444
>CHL00195 ycf46 Ycf46; Provisional
Probab=23.27 E-value=2.3e+02 Score=19.20 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=27.3
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
+-||+-++|+-+.-++.+..+.|+++-....
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 6689999999999999999999999866554
No 445
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=23.25 E-value=1.3e+02 Score=15.79 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCCceEEEEecC
Q 038935 14 FCYRVIWALKLKGVEYEYVEVNI 36 (75)
Q Consensus 14 ~~~~~~~~l~~~gi~~~~~~v~~ 36 (75)
+...++-+|+..||+....++--
T Consensus 65 Nv~~a~~~L~~~gi~I~a~dvGG 87 (114)
T PF03975_consen 65 NVEAARELLAEEGIPIVAEDVGG 87 (114)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-S
T ss_pred HHHHHHHHHHHCCCcEEEeeCCC
Confidence 46789999999999998877753
No 446
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=23.02 E-value=1.4e+02 Score=16.14 Aligned_cols=42 Identities=24% Similarity=0.482 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEe
Q 038935 17 RVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPV 63 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l 63 (75)
.++-.|+.+|+......+.... .++.+ .+. ..|.+..+|..|
T Consensus 31 ~l~~~L~~~Giev~l~~~~l~~--~~~~~-~~~--~S~~I~inG~pi 72 (120)
T PF10865_consen 31 ELAPVLAPLGIEVRLEEIELDE--EEFAR-QPL--ESPTIRINGRPI 72 (120)
T ss_pred HHHHHHHhCCcEEEEEEEECCh--HHHhh-ccc--CCCeeeECCEeh
Confidence 3456677889987777766543 23322 223 467777777655
No 447
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=22.84 E-value=51 Score=20.23 Aligned_cols=16 Identities=31% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCceEEE
Q 038935 17 RVIWALKLKGVEYEYV 32 (75)
Q Consensus 17 ~~~~~l~~~gi~~~~~ 32 (75)
.+.++|.+.|+||++.
T Consensus 132 PAhLFL~EigvpYede 147 (328)
T KOG2960|consen 132 PAHLFLQEIGVPYEDE 147 (328)
T ss_pred hHHHHHHHhCCCcccC
Confidence 4579999999999864
No 448
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=1.7e+02 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.012 Sum_probs=26.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYV 32 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~ 32 (75)
+-||+-++|+-+..++.+.++.|+.|--+
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 56899999999999999999999998754
No 449
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=22.63 E-value=2e+02 Score=17.83 Aligned_cols=32 Identities=16% Similarity=-0.069 Sum_probs=26.7
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
.+-+|+-++++-+.-++.+.++.|..+.....
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~ 84 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSG 84 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 46789999999999999999999988765443
No 450
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=2.2e+02 Score=18.19 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=29.3
Q ss_pred eEEEeeCCChhHHHHHHHHHh-----cCCceEEEEecCCCCcHHHhhhCCCCCcccEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKL-----KGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLV 57 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (75)
+..|+.++|+.|.+..-.... +| ......|+... ..++.+.... +..|++.
T Consensus 51 ~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~-~~~~~~~y~i-~gfPtl~ 106 (383)
T KOG0191|consen 51 LVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDE-HKDLCEKYGI-QGFPTLK 106 (383)
T ss_pred EEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchh-hHHHHHhcCC-ccCcEEE
Confidence 567889999999977544442 23 33344455433 3334433333 3588886
No 451
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=22.41 E-value=1.5e+02 Score=16.18 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=14.9
Q ss_pred eEEEeeCCChhHHHHHHHH
Q 038935 4 VKLLGTWPSSFCYRVIWAL 22 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l 22 (75)
+++|+++.++.+++.---|
T Consensus 3 ~~I~Y~S~TGNt~~f~~kl 21 (134)
T PRK03600 3 MLVYFSSKTGNTHRFVQKL 21 (134)
T ss_pred EEEEEECCChhHHHHHHHh
Confidence 8899999999998664444
No 452
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=72 Score=19.88 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=30.4
Q ss_pred EeeCCChhHHHHHHHHHhcCC-----ceEEEEecCCCCcHHHhhhCCCCCcccEEE--eCCEE
Q 038935 7 LGTWPSSFCYRVIWALKLKGV-----EYEYVEVNIHNKSELLLQLNPVHKQVPVLV--HGGRP 62 (75)
Q Consensus 7 y~~~~~p~~~~~~~~l~~~gi-----~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 62 (75)
++..||+.|.++-=++...-- =|-.++|+.-... .+-++. ...|+++ .+|..
T Consensus 28 fta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t---aa~~gV-~amPTFiff~ng~k 86 (288)
T KOG0908|consen 28 FTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGT---AATNGV-NAMPTFIFFRNGVK 86 (288)
T ss_pred EEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhch---hhhcCc-ccCceEEEEecCeE
Confidence 677899999998766665433 3444555532222 223444 3578776 45543
No 453
>CHL00206 ycf2 Ycf2; Provisional
Probab=22.08 E-value=1.8e+02 Score=23.90 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=26.9
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
+-|++-++|+.+.-|+.++.+.++|+-.+.
T Consensus 1633 ILLiGPPGTGKTlLAKALA~es~VPFIsIS 1662 (2281)
T CHL00206 1633 ILVIGSIGTGRSYLVKYLATNSYVPFITVF 1662 (2281)
T ss_pred eEEECCCCCCHHHHHHHHHHhcCCceEEEE
Confidence 568999999999999999999999987654
No 454
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=21.83 E-value=2e+02 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.021 Sum_probs=24.7
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
+.|.+-++|+=+..++.+.++.|..+.+
T Consensus 48 LlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4678889999999999999999988765
No 455
>PF15616 TerY-C: TerY-C metal binding domain
Probab=21.77 E-value=27 Score=19.19 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=8.7
Q ss_pred EEeeCCChhHHHH
Q 038935 6 LLGTWPSSFCYRV 18 (75)
Q Consensus 6 ly~~~~~p~~~~~ 18 (75)
|.+.+.||+|-..
T Consensus 74 L~g~PgCP~CGn~ 86 (131)
T PF15616_consen 74 LIGAPGCPHCGNQ 86 (131)
T ss_pred hcCCCCCCCCcCh
Confidence 5566788887643
No 456
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.73 E-value=1.4e+02 Score=15.68 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCc----HHHhh-hCCCCCcccEEEe
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKS----ELLLQ-LNPVHKQVPVLVH 58 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~----~~~~~-~~p~~~~vP~l~~ 58 (75)
.|.....+-..+..|+.|...+|...... ..|.+ +.... + |+|..
T Consensus 43 qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~-~-Pvl~h 92 (110)
T PF04273_consen 43 QPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLP-K-PVLAH 92 (110)
T ss_dssp -T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTT-T-SEEEE
T ss_pred CCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCC-C-CEEEE
Confidence 35555677889999999999999876432 22332 33332 2 88873
No 457
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=21.68 E-value=1.5e+02 Score=17.23 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCceEEEEec
Q 038935 14 FCYRVIWALKLKGVEYEYVEVN 35 (75)
Q Consensus 14 ~~~~~~~~l~~~gi~~~~~~v~ 35 (75)
|..-++-+|+.+|++++.+.+.
T Consensus 116 yp~i~~~~f~~~Gi~v~ii~l~ 137 (182)
T TIGR00070 116 YPNLARRYFEKKGIDVEIIKLN 137 (182)
T ss_pred CHHHHHHHHHHcCCeEEEEECc
Confidence 5567889999999988876655
No 458
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=21.67 E-value=2e+02 Score=17.42 Aligned_cols=31 Identities=13% Similarity=-0.070 Sum_probs=26.2
Q ss_pred eEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 4 VKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 4 ~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
+-+|+-++++-+.-++.+.++.+.++.....
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~ 63 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSG 63 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 6789999999999999999999988765543
No 459
>TIGR03563 perox_SACOL1771 peroxiredoxin, SACOL1771 subfamily. This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.
Probab=21.64 E-value=1.5e+02 Score=15.88 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCCceEEEEecCC
Q 038935 14 FCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 14 ~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
++..++.+++.+|++++...++..
T Consensus 55 ~~~~~~~~a~~~gi~~~~~~v~~~ 78 (138)
T TIGR03563 55 YIITLAAMLERAGLEDEKLTLESE 78 (138)
T ss_pred HHHHHHHHHHHcCCcceEEEEEEE
Confidence 355778999999999887666543
No 460
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=21.59 E-value=1.7e+02 Score=18.33 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=18.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCc
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVE 28 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~ 28 (75)
++.+|.......+.++.++|+..|.+
T Consensus 105 ~VVvY~~~g~~~a~r~~~~L~~~G~~ 130 (320)
T PLN02723 105 GVVVYDGKGIFSAARVWWMFRVFGHE 130 (320)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCC
Confidence 46677555445677888999999986
No 461
>PRK07116 flavodoxin; Provisional
Probab=21.51 E-value=1.6e+02 Score=16.19 Aligned_cols=28 Identities=7% Similarity=-0.041 Sum_probs=17.8
Q ss_pred CcceEEEeeCCChhHHHH-HHHHHhcCCc
Q 038935 1 MEEVKLLGTWPSSFCYRV-IWALKLKGVE 28 (75)
Q Consensus 1 M~~~~ly~~~~~p~~~~~-~~~l~~~gi~ 28 (75)
|.+..+++++.++.++++ +.+.+..|.+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d 30 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGAD 30 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 445566667788888874 4555555554
No 462
>PHA03045 IMV membrane protein; Provisional
Probab=21.45 E-value=91 Score=16.77 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.3
Q ss_pred EEEeeCCChhHHHHHHHHHhcCCceE
Q 038935 5 KLLGTWPSSFCYRVIWALKLKGVEYE 30 (75)
Q Consensus 5 ~ly~~~~~p~~~~~~~~l~~~gi~~~ 30 (75)
.++++...+..-+++++++..|.|..
T Consensus 49 ~~f~y~f~~~Gi~A~~~vd~~~~plp 74 (113)
T PHA03045 49 RLFSYDFTTSGIKAKMAVDNNGVPLP 74 (113)
T ss_pred EEEEEEccchhhhhhhhhhcCCCccc
Confidence 46667777788899999999987753
No 463
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=21.24 E-value=2e+02 Score=17.90 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=25.1
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEE
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEY 31 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~ 31 (75)
.+.|.+.++|+=+.-.+.+.+..|.+|-.
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 46788899999999999999999998763
No 464
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=21.02 E-value=1.3e+02 Score=17.25 Aligned_cols=9 Identities=11% Similarity=-0.141 Sum_probs=5.1
Q ss_pred CCChhHHHH
Q 038935 10 WPSSFCYRV 18 (75)
Q Consensus 10 ~~~p~~~~~ 18 (75)
.+|+.|...
T Consensus 47 ~~~~~C~~e 55 (199)
T PTZ00253 47 DFTFVCPTE 55 (199)
T ss_pred CCCCcCHHH
Confidence 356666653
No 465
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=20.83 E-value=1e+02 Score=13.67 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHhcCCceEEEE
Q 038935 12 SSFCYRVIWALKLKGVEYEYVE 33 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~ 33 (75)
+++..++.-.|+..|++++.+.
T Consensus 14 ~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 14 VGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cCHHHHHHHHHHHcCCeEEEEe
Confidence 5678889999999999998874
No 466
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=20.81 E-value=1.8e+02 Score=16.44 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=19.8
Q ss_pred eEEEe-eCCChhHH-HHHHHHHhcCCceEE
Q 038935 4 VKLLG-TWPSSFCY-RVIWALKLKGVEYEY 31 (75)
Q Consensus 4 ~~ly~-~~~~p~~~-~~~~~l~~~gi~~~~ 31 (75)
+++|- -+-|++|+ -+..+.+..|++.-.
T Consensus 102 ~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~ 131 (146)
T PF14437_consen 102 MTMYVDRDVCGYCGGDIPSMAEKLGLKSLT 131 (146)
T ss_pred EEEEECcccchHHHHHHHHHHHHcCCCeEE
Confidence 44443 46799998 567888889998443
No 467
>PRK02478 Maf-like protein; Reviewed
Probab=20.69 E-value=2e+02 Score=16.90 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=18.7
Q ss_pred EEeeCCChhHHHHHHHHHhcCCceEEEEecCC
Q 038935 6 LLGTWPSSFCYRVIWALKLKGVEYEYVEVNIH 37 (75)
Q Consensus 6 ly~~~~~p~~~~~~~~l~~~gi~~~~~~v~~~ 37 (75)
|.-.+.||+-+ -+|+..|++|+.+..+.+
T Consensus 5 iILAS~SprR~---elL~~~g~~f~v~~~~id 33 (199)
T PRK02478 5 LILASKSPFRR---ALLENAGLEFSAAAADID 33 (199)
T ss_pred EEEeCCCHHHH---HHHHHCCCCeEEecCCCC
Confidence 44455666543 347889999997755443
No 468
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=20.62 E-value=2.8e+02 Score=18.70 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=27.9
Q ss_pred ceEEEeeCCChhHHHHHHHHHhcCCceEEEEe
Q 038935 3 EVKLLGTWPSSFCYRVIWALKLKGVEYEYVEV 34 (75)
Q Consensus 3 ~~~ly~~~~~p~~~~~~~~l~~~gi~~~~~~v 34 (75)
.+-|++.++|+-+.-++.+....+++|-..+.
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 46789999999999999999999999877763
No 469
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=20.59 E-value=1.5e+02 Score=18.83 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=19.2
Q ss_pred CChhHHHHHHHHHhcC---CceEEEEecCC
Q 038935 11 PSSFCYRVIWALKLKG---VEYEYVEVNIH 37 (75)
Q Consensus 11 ~~p~~~~~~~~l~~~g---i~~~~~~v~~~ 37 (75)
+|+.++|++.+|+... .++..+.+|..
T Consensus 84 GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS 113 (319)
T TIGR03439 84 GSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence 7899999999888753 35555666654
No 470
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.33 E-value=2.5e+02 Score=17.91 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHhcCCceEEEEecCCCCcHHHhhhCCCCCcccEEEeCCEEeec
Q 038935 12 SSFCYRVIWALKLKGVEYEYVEVNIHNKSELLLQLNPVHKQVPVLVHGGRPVAE 65 (75)
Q Consensus 12 ~p~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 65 (75)
.+.+..+...|+++|+++...--........+.+.-.. ..|++..+|..++.
T Consensus 20 ~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl--~~p~I~eNGA~I~~ 71 (302)
T PRK12702 20 YGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRL--EHPFICEDGSAIYV 71 (302)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC--CCeEEEeCCcEEEE
Confidence 34567778888889999875433322223334443333 24888888766654
No 471
>COG2371 UreE Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=1.4e+02 Score=16.96 Aligned_cols=26 Identities=19% Similarity=0.094 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhcCCceEEEEecCCC
Q 038935 13 SFCYRVIWALKLKGVEYEYVEVNIHN 38 (75)
Q Consensus 13 p~~~~~~~~l~~~gi~~~~~~v~~~~ 38 (75)
||=..++.+|+..|++|+.....+..
T Consensus 114 ~~D~v~~~mL~~lG~~~~~~~~pf~~ 139 (155)
T COG2371 114 PYDHVLRAMLEGLGVTVTRVELPFEP 139 (155)
T ss_pred cccHHHHHHHHHcCCceeeeeccCCc
Confidence 44556888999999999887766543
Done!