BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038936
         (476 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/476 (75%), Positives = 426/476 (89%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AI ILC Q RLKEALQILHQI  PS S+YS+LIQ C ++R L++GKKVH H+K SGF PG
Sbjct: 45  AIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPG 104

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +FI N LL+MYAKC ++ D+Q LFDEM ERD+CS+N +ISG+ K G L++A++LFD+MP+
Sbjct: 105 LFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPE 164

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RDNFSWTAMISGYVR+++P EAL+L+RMM+  +NS SNKFT+SS L+A +A+ CLR+GKE
Sbjct: 165 RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKE 224

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHGYIMRTG DSDEVVWSALSDMYGKCGSI EAR IFDKMVDRD+V+WTAMI RYFQ+GR
Sbjct: 225 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
           R+EGF LF++L++SGIRPN FTF+GVLNACA+  +EELGK+VHGYMTR+G+DP+SFAASA
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASA 344

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LVHMYSKCGN+ ++++VF   P+PDL SWTSLIAGYAQNG PD+A+ YFELL+KSGTQPD
Sbjct: 345 LVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPD 404

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           HI FVGVL+AC HAGLVDKGL YFHSIKE++GLT+TADHYACI+DLLARSG+F EAE++I
Sbjct: 405 HITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENII 464

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           SKM MKPDKFLWASLLGGCRIHGNL LA+RAAEALFEIEPENPATYVT+ANIYA+A
Sbjct: 465 SKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATA 520


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/476 (75%), Positives = 417/476 (87%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AIDILC Q+RL+EA+QIL  +  PS + YS+L+Q C Q RAL+EG KVH+H K+SGF PG
Sbjct: 64  AIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPG 123

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V ISN +LDMY KC ++ +A+ LFDEM ERD+CS+N MISG+ K G L++AR LFD+M +
Sbjct: 124 VVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTE 183

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RDNFSWTAM SGYVR++Q  EAL+L+R MQ  EN   NKFT+SS L+A +AIQ L LGKE
Sbjct: 184 RDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKE 243

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHG+I+R G D D VVWSALSDMYGKCGSI EAR IFDK VDRDVVSWTAMI RYF+EGR
Sbjct: 244 IHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGR 303

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
           REEGFALFS+L+KSGI PN FTF+GVLNACADHAAEELGKQVHGYMTRIG+DP SFAAS 
Sbjct: 304 REEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAAST 363

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LVHMY+KCGN++N+++VFNGMPRPDLVSWTSLI+GYAQNG PD+AL++FELLLKSGTQPD
Sbjct: 364 LVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPD 423

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           HI FVGVL+ACTHAGLVDKGL+YF SIKEKHGLT+TADHYAC++DLL+RSGR  EAED+I
Sbjct: 424 HITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDII 483

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            KMP++PDKFLWASLLGGCRIHGNL LAKRAAEALFEIEPENPATY T+ANIYA+A
Sbjct: 484 DKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATA 539


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/477 (72%), Positives = 411/477 (86%), Gaps = 1/477 (0%)

Query: 1   AIDILCNQRRLKEALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           A+D+LC Q+R+KEA+++LH+  H PS  +YS+LI  C ++RALE G++VH+H K+S F P
Sbjct: 61  AVDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVP 120

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
           GVFISN LLDMYAKCG++ DAQ LFDEM  RD+CS+NTMI G+ K G LEQAR LFDEMP
Sbjct: 121 GVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMP 180

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           QRDNFSW A ISGYV +NQP EAL+L+R+MQ  E S SNKFTLSS L+A +AI CLRLGK
Sbjct: 181 QRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGK 240

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           EIHGY++RT  + DEVVWSAL D+YGKCGS++EAR IFD+M DRDVVSWT MI R F++G
Sbjct: 241 EIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDG 300

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           RREEGF LF +L++SG+RPN +TFAGVLNACADHAAE LGK+VHGYM   GYDP SFA S
Sbjct: 301 RREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAIS 360

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           ALVHMYSKCGN   +++VFN M +PDLVSWTSLI GYAQNG PD+AL +FELLL+SGT+P
Sbjct: 361 ALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKP 420

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D + +VGVL+ACTHAGLVDKGL+YFHSIKEKHGL +TADHYAC++DLLARSGRF EAE++
Sbjct: 421 DQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENI 480

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           I  MP+KPDKFLWASLLGGCRIHGNL+LAKRAA+AL+EIEPENPATY+T+ANIYA+A
Sbjct: 481 IDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANA 537


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/475 (69%), Positives = 405/475 (85%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I++ C Q RLKEA+  LH+I  PSP +YS+LI  C ++R LE GK+VH+H K+S F PG+
Sbjct: 39  IELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGI 98

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            ISN L+ MYAKCG++ DAQ LFDE+ ++D+CS+NTMISG+   G +EQAR LFDEMP R
Sbjct: 99  VISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR 158

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           DNFSW A+ISGYV     +EALDL+RMMQ  E+S  N FTLSS L+A +AI  LR GKEI
Sbjct: 159 DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEI 218

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           HGY++R+G + DEVVW+AL D+YGKCGS+NEAR IFD+M D+D+VSWT MI R F++GR+
Sbjct: 219 HGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRK 278

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           +EGF+LF +L+ SG+RPN +TFAGVLNACAD AAE++GK+VHGYMTR+GYDP+SFAASAL
Sbjct: 279 KEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASAL 338

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           VH+YSKCGN E +++VFN MPRPDLVSWTSLI GYAQNG PD AL++FE LL+SGT+PD 
Sbjct: 339 VHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDE 398

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           I FVGVL+ACTHAGLVD GL+YFHS+KEKHGL +TADHYAC++DLLARSGRF EAE++I 
Sbjct: 399 ITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIID 458

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            MPMKPDKFLWASLLGGCRIHGN++LA+RAA+ALFE+EPENPATY+T++NIYA+A
Sbjct: 459 NMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANA 513


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/476 (69%), Positives = 405/476 (85%), Gaps = 1/476 (0%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AIDILC Q RL+EA+Q+L++I  P  SIY +L++FC + RAL+EGK+VH+H+K+SG   G
Sbjct: 94  AIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIG 152

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           ++ISN LLDMYAKCG++ DA+ +FDEM  RD+CS+N MISG+ KGG+ E+ARNLFD+MP 
Sbjct: 153 LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPN 212

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RDNFSWTA+ISG V++N+P EAL+LYR+MQ  + S SNK T+SS L+A +AI  L +GK+
Sbjct: 213 RDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKK 272

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHG+IMR G DSDEVVW +L DMYGKCGSI EAR IFDKM +RDVVSWT MI  Y + GR
Sbjct: 273 IHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGR 332

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
           REEGFALF  L+ S I PN FTFAGVLNACAD AAE+LGKQ+H YM R+G+D +S AASA
Sbjct: 333 REEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASA 392

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LVHMYSKCG++EN+K VF  +P+PDL SWTSL+ GYAQ+G  DKAL +FELLLKSGT+PD
Sbjct: 393 LVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPD 452

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I F+GVL+AC HAGLVDKGL+YFHSIKEKHGLT T DHYACI+DLLAR+G+F EAE +I
Sbjct: 453 GIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESII 512

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++MP+KPDK++WA+LLGGCRIHGNL+LAKRAA++LFEIEPENPATYVT+ANIYASA
Sbjct: 513 NEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASA 568


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/476 (65%), Positives = 399/476 (83%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AID+LC Q+ L+EA+Q+L +   P  S Y +LIQ C Q RALEEGKKVH H+++SGF PG
Sbjct: 62  AIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 121

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + I N +L MYAKCG++ DA+ +FDEM ERDVCS+N M++G+ + G LE+ARNLFDEMP+
Sbjct: 122 IVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPE 181

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RD++SWTAM++GYV+ +QP EAL LY +MQ   NS  N FT+SS ++A +AI+C+R GKE
Sbjct: 182 RDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKE 241

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHG+I+R G DSDEV+WS+L DMYGKCG I+EAR IFDK++D+DVVSWT+MI RYF+  R
Sbjct: 242 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSR 301

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             EGF+LFSELI S  RPN +TF+GVLNACAD   EELG+QVHGYMTR+G+DPYSFA+S+
Sbjct: 302 WREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSS 361

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY+KCGN+E+++ V +G P+PDLVS TSLI GYAQNG PD+AL+YF+LLLKSGT+PD
Sbjct: 362 LIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPD 421

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           H+ FV VL+ACTHAGLV+KGL++F+SI EKH LT+T+DHY C+VDLLARSGRF + + V+
Sbjct: 422 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVL 481

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           S+MPMKP KFLWAS+LGGC  +GN+DLA+ AA+ LF+IEPENP TYVTMANIYA+A
Sbjct: 482 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAA 537


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/476 (65%), Positives = 395/476 (82%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AID+LC Q+ L+EA+Q+L +   P  S Y +LIQ C Q RALEEGKKVH H+++SGF PG
Sbjct: 60  AIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 119

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + I N LL MYAKCG++ DA+ +FDEM  RD+CS+N M++G+ + G LE+AR LFDEM +
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +D++SWTAM++GYV+ +QP EAL LY +MQ   NS  N FT+S  ++A +A++C+R GKE
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHG+I+R G DSDEV+WS+L DMYGKCG I+EAR IFDK+V++DVVSWT+MI RYF+  R
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             EGF+LFSEL+ S  RPN +TFAGVLNACAD   EELGKQVHGYMTR+G+DPYSFA+S+
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY+KCGN+E++K V +G P+PDLVSWTSLI G AQNG PD+AL+YF+LLLKSGT+PD
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           H+ FV VL+ACTHAGLV+KGL++F+SI EKH L++T+DHY C+VDLLARSGRF + + VI
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           S+MPMKP KFLWAS+LGGC  +GN+DLA+ AA+ LF+IEPENP TYVTMANIYA+A
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAA 535


>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 294/390 (75%), Positives = 341/390 (87%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AI +LC Q RLKEA+Q+L+QI  PSPSIYSSLIQ C +NRALE GKKVH H+K SGF PG
Sbjct: 55  AIALLCEQNRLKEAIQVLNQIDRPSPSIYSSLIQSCLKNRALEVGKKVHDHIKLSGFIPG 114

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + ISN LLDMYAKC ++ DAQ LF+EM ERD+CS+N +ISG  K G L++AR LFD MP+
Sbjct: 115 LVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMGLLKEARKLFDTMPE 174

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RDNFSWTAMISGYVR+N+P EAL+LYR+M+  EN  SNKFT+SSVL+A +AI CLR+GKE
Sbjct: 175 RDNFSWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKE 234

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHGYIMRTG DSDEVVWSALSDMYGKCGSI EAR IFDKMV+RDVV+WTAMI RYF++GR
Sbjct: 235 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGR 294

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
           REEGF LF+EL++SGI+PN FTFAGVLNACAD   E +GKQVHG+MTR  +DP+SFAASA
Sbjct: 295 REEGFELFAELLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASA 354

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LVHMYSKCGN+ N+++VF GMP+PDLVSWTSLIAGYAQNG PD+AL+YFELLLKSGT+PD
Sbjct: 355 LVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPD 414

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           HI FVGVL+AC HAGLVDKGLQYFHSI +K
Sbjct: 415 HITFVGVLSACAHAGLVDKGLQYFHSIMDK 444



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 161/333 (48%), Gaps = 46/333 (13%)

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--------------- 207
           SS++ +    + L +GK++H +I  +GF    V+ + L DMY KC               
Sbjct: 84  SSLIQSCLKNRALEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQKLFEEMGE 143

Query: 208 ----------------GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
                           G + EAR++FD M +RD  SWTAMI  Y +  R  E   L+  +
Sbjct: 144 RDLCSWNVLISGCAKMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEALELYRLM 203

Query: 252 IK-SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
            K   +  N FT + VL A A      +GK++HGY+ R G D      SAL  MY KCG+
Sbjct: 204 KKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGS 263

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +E ++ +F+ M   D+V+WT++I  Y ++G  ++  E F  LL+SG +P+   F GVL A
Sbjct: 264 IEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDFTFAGVLNA 323

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADH------YACIVDLLARSGRFHEAEDVISKMP 424
           C   G+   G       K+ HG    AD        + +V + ++ G    AE V   MP
Sbjct: 324 CADLGVEGIG-------KQVHGHMTRADFDPFSFAASALVHMYSKCGNMVNAERVFRGMP 376

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            +PD   W SL+ G   +G+ D A +  E L +
Sbjct: 377 -QPDLVSWTSLIAGYAQNGHPDEALQYFELLLK 408


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/421 (56%), Positives = 316/421 (75%), Gaps = 8/421 (1%)

Query: 63  ISNCLLDMYAK-CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS-LEQARNLFDEMPQ 120
           +SN LL + +     + DA  LF  +   D+CS+NT+IS  ++    L  AR LFD MPQ
Sbjct: 64  LSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQ 123

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLG 178
           RD+F+W+A++SGY R+ QP  AL LYR MQ     +   N+FT SS L+A +A +C R G
Sbjct: 124 RDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAG 183

Query: 179 KEIHGYIMRTGFDS---DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           +E+H +++R G D+   D V+WSAL+DMY KCG +++AR++FD+M  RD VSWTAM+ RY
Sbjct: 184 RELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERY 243

Query: 236 FQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           F  GR  EGF LF  ++++ G+RPN FT+AGVL ACA+ A E  G+QVHG M + G    
Sbjct: 244 FDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDS 303

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            FA SAL+ MYSKCG++ ++ +VF  M +PDLVSWT++I+GYAQNG P++AL YF++ L+
Sbjct: 304 CFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLR 363

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG +PDH+ FVGVL+AC HAGLVDKGL+ FHSIKE++ + +TADHYAC++DLL+RSG+F 
Sbjct: 364 SGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFE 423

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            AE +I  M +KP+KFLWASLLGGCRIH N+ LA+RAAEALFEIEPENPATYVT+ANIYA
Sbjct: 424 RAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYA 483

Query: 475 S 475
           S
Sbjct: 484 S 484



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y+ +++ C +      G++VH  +  SG     F  + LL MY+KCG++  A  +
Sbjct: 267 PNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRV 326

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
           F+ M + D+ S+  +ISG+ + G  E+A   FD
Sbjct: 327 FEAMAKPDLVSWTAVISGYAQNGQPEEALRYFD 359


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/421 (56%), Positives = 315/421 (74%), Gaps = 8/421 (1%)

Query: 63  ISNCLLDMYAK-CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS-LEQARNLFDEMPQ 120
           +SN LL + +     + DA  LF  +   D+CS+NT+IS  ++    L  AR LFD MPQ
Sbjct: 64  LSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQ 123

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLG 178
           RD+F+W+A++SGY R+ QP  AL LYR MQ     +   N+FT SS L+A +A +C R G
Sbjct: 124 RDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAG 183

Query: 179 KEIHGYIMRTGFDS---DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           +E+H +++R G D+   D V+WSAL+DMY KCG +++AR++FD+M  RD VSWTAM+ RY
Sbjct: 184 RELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERY 243

Query: 236 FQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           F  GR  EGF LF  ++++ G+RPN FT+AGVL ACA  A E  G+QVHG M + G    
Sbjct: 244 FDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDS 303

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            FA SAL+ MYSKCG++ ++ +VF  M +PDLVSWT++I+GYAQNG P++AL YF++ L+
Sbjct: 304 CFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLR 363

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG +PDH+ FVGVL+AC HAGLVDKGL+ FHSIKE++ + +TADHYAC++DLL+RSG+F 
Sbjct: 364 SGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFE 423

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            AE +I  M +KP+KFLWASLLGGCRIH N+ LA+RAAEALFEIEPENPATYVT+ANIYA
Sbjct: 424 RAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYA 483

Query: 475 S 475
           S
Sbjct: 484 S 484



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y+ +++ C Q      G++VH  +  SG     F  + LL MY+KCG++  A  +
Sbjct: 267 PNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRV 326

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
           F+ M + D+ S+  +ISG+ + G  E+A   FD
Sbjct: 327 FEAMAKPDLVSWTAVISGYAQNGQPEEALRYFD 359


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/421 (57%), Positives = 316/421 (75%), Gaps = 4/421 (0%)

Query: 59  PGVFISNCLLDMYAK-CGNISDAQTLFDEMQERDVCSYNTMISGFTKGG-SLEQARNLFD 116
           P   +SN +L + +     + DA  L   +   DVCSYNT+++   +    L  AR LFD
Sbjct: 58  PSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFD 117

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS--VSNKFTLSSVLSAVSAIQC 174
            MP+RD+FSW+A++S + R+ QP  AL +YR M     S  V N+FT SS L+A +A +C
Sbjct: 118 RMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARC 177

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
            R G+E+H +++R G D+D VVWSAL+DMY KCG +++AR +FD+M  RDVVSWTAM+ R
Sbjct: 178 ARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVER 237

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           YF   R  EGF LF  +++SGI+PN FT+AGVL ACA+  +E+LGKQVHG MT+      
Sbjct: 238 YFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDS 297

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            FA SALVHMYSK G++  + +VF GMP+ DLVSWT++I+GYAQNG PD+AL YF++LL+
Sbjct: 298 CFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLR 357

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG +PDH+ FVGVL+AC HAGLVDKGL  FHSIK+++G+ +TADHYAC++DLL+RSG F 
Sbjct: 358 SGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFE 417

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            AE++I+ M +KP+KFLWASLLGGCRIH N+ LA+ AAEALFEIEPENPATYVT+ANIYA
Sbjct: 418 RAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYA 477

Query: 475 S 475
           S
Sbjct: 478 S 478



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 141/294 (47%), Gaps = 36/294 (12%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+++H H+   G      + + L DMYAKCG + DA+++FD M  RDV            
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVV----------- 229

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLS 163
                               SWTAM+  Y    +  E   L+ RM+++      N+FT +
Sbjct: 230 --------------------SWTAMVERYFDARRDGEGFRLFVRMLRS--GIQPNEFTYA 267

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            VL A +     +LGK++HG + ++         SAL  MY K G +  A ++F  M   
Sbjct: 268 GVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKL 327

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV- 282
           D+VSWTAMI  Y Q G+ +E    F  L++SG RP+  TF GVL+ACA     + G  + 
Sbjct: 328 DLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIF 387

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           H      G +  +   + ++ + S+ G  E ++++ N M  +P+   W SL+ G
Sbjct: 388 HSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGG 441



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 55/104 (52%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +++L     P+   Y+ +++ C +  + + GK+VH  +  S      F  + L+ MY+K 
Sbjct: 252 VRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKY 311

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           G++  A  +F  M + D+ S+  MISG+ + G  ++A   FD +
Sbjct: 312 GDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDML 355


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/421 (57%), Positives = 314/421 (74%), Gaps = 4/421 (0%)

Query: 59  PGVFISNCLLDMYAK-CGNISDAQTLFDEMQERDVCSYNTMISGFTKGG-SLEQARNLFD 116
           P   +SN +L + +     + DA  L   +   DVCSYNT+++   +    L  AR LFD
Sbjct: 58  PSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFD 117

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQC 174
            MP+RD+FSW+A++S +VR+ QP  AL +YR M  +   +   N+FT SS L+A +A +C
Sbjct: 118 RMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARC 177

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
            R G+E+H +++R G D+D VVWSAL+DMY K G +++AR +FD+M  RDVVSWTAM+ R
Sbjct: 178 ARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDR 237

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           YF  GR  EGF LF  +++SGI PN FT+AGVL ACA+  +E+LGKQVHG M +      
Sbjct: 238 YFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDS 297

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            FA SALVHMYSK G++  + +VF GMP+PDLVSWT++I+GYAQNG PD+AL  F++LL 
Sbjct: 298 CFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLS 357

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG +PDH+ FVGVL+AC HAGLVDKGL  FHSIK+K+G+ +TADHYAC++DLL+RSG F 
Sbjct: 358 SGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFE 417

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            AED+I+ MP+KP+KFLWASLLGGCRIH N+ LA  AAEALFEIEPENPATYVT+ANIYA
Sbjct: 418 RAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYA 477

Query: 475 S 475
           S
Sbjct: 478 S 478



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 141/294 (47%), Gaps = 36/294 (12%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+++H H+   G      + + L DMYAK G + DA+++FD M  RDV S          
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVS---------- 230

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLS 163
                                WTAM+  Y    +  E   L+ RMM++    + N+FT +
Sbjct: 231 ---------------------WTAMLDRYFDAGRDGEGFRLFVRMMRS--GILPNEFTYA 267

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            VL A +     +LGK++HG + ++         SAL  MY K G +  A ++F  M   
Sbjct: 268 GVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKP 327

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV- 282
           D+VSWTAMI  Y Q G+ +E    F  L+ SG RP+  TF GVL+ACA     + G  + 
Sbjct: 328 DLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIF 387

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           H    + G +  +   + ++ + S+ G  E ++ + N MP +P+   W SL+ G
Sbjct: 388 HSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGG 441



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y+ +++ C +  + + GK+VH  +  S      F  + L+ MY+K G++  A  +
Sbjct: 261 PNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRV 320

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           F  M + D+ S+  MISG+ + G  ++A + FD +
Sbjct: 321 FRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDML 355



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           A+++   +  P    ++++I    QN   +E       L SSGF+P       +L   A 
Sbjct: 317 AMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAH 376

Query: 74  CGNISDAQTLFDEMQ-----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN-FSWT 127
            G +     +F  ++     E     Y  +I   ++ G  E+A ++ + MP + N F W 
Sbjct: 377 AGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWA 436

Query: 128 AMISG 132
           +++ G
Sbjct: 437 SLLGG 441


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/447 (41%), Positives = 295/447 (65%), Gaps = 1/447 (0%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S+++        ++ G+++H  +   GF   VF+ + L+DMYAK G +S A  +FDE+Q
Sbjct: 141 FSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ 200

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           ER+V  YNTMI+G  + G ++ ++ LF  M +RD+ SWT MI+G ++     EA+DL+R 
Sbjct: 201 ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRD 260

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+  E    +++T  SVL+A   ++ L+ GKEIH  I+R+G++ +  V SAL DMY KC 
Sbjct: 261 MRQ-EGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCR 319

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           S+  A  +F +M +++VVSWTAM+  Y Q G  EE   +F ++ ++GI P+ FT   V++
Sbjct: 320 SVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVIS 379

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA+ A+ E G Q H      G   +   ++AL+ +Y KCG++E+S ++F+ M   D VS
Sbjct: 380 SCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS 439

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT+L++GYAQ G  ++ ++ FE +L  G +PD + F+ VL+AC+ AGLV++G QYF S+ 
Sbjct: 440 WTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESML 499

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + HG+   +DHY C++DL  R+GR  EA++ I+KMP  PD   WA+LL  CR++GN ++ 
Sbjct: 500 KDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIG 559

Query: 449 KRAAEALFEIEPENPATYVTMANIYAS 475
           K AAE+L E++P+NPA Y+ +++IYA+
Sbjct: 560 KWAAESLLELDPQNPAGYILLSSIYAA 586



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/436 (32%), Positives = 226/436 (51%), Gaps = 33/436 (7%)

Query: 34  QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC 93
           + C + R   + KK+H  +  S   P  F+ N L++ Y+K GNI+ A+ +FD+M + +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
           S+NTM+S ++K G L   + +F  MP RD  SW ++ISGYV Y   +EA+  Y  M    
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
               N+ T S++L  VS+  C+ LG++IHG I++ GF +   V S+L DMY K G ++ A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 214 RQIFDK-------------------------------MVDRDVVSWTAMIGRYFQEGRRE 242
            Q+FD+                               M +RD +SWT MI    Q G   
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E   LF ++ + G+  + +TF  VL AC    A + GK++H  + R GY+   F  SALV
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALV 312

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY KC +V  ++ VF  M   ++VSWT+++ GY QNG  ++A+  F  + ++G +PD  
Sbjct: 313 DMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDF 372

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               V+++C +   +++G Q FH      GL         ++ L  + G   ++  +  +
Sbjct: 373 TLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 423 MPMKPDKFLWASLLGG 438
           M  + D+  W +L+ G
Sbjct: 432 MSFR-DEVSWTALVSG 446



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 34/224 (15%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P      S+I  C    +LEEG + H     SG    + +SN L+ +Y KCG+I D+  
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQ 427

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LFDEM  RD  S+  ++SG+ + G   +  +LF+ M          ++ G     +P   
Sbjct: 428 LFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERM----------LVQGL----KP--- 470

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALS 201
                          +  T  +VLSA S    +  G++    +++  G       ++ + 
Sbjct: 471 ---------------DAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMI 515

Query: 202 DMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEG 244
           D++G+ G + EA+   +KM    D + W  ++      G  E G
Sbjct: 516 DLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIG 559


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/447 (41%), Positives = 291/447 (65%), Gaps = 1/447 (0%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S+L+    +   ++ G+++H H+   GF   VF+ + L+DMY+K G IS A+ +FDE+ 
Sbjct: 146 FSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELP 205

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E++V  YNT+I G  + G +E ++ LF EM +RD+ SWT+MI+G+ +     +A+D++R 
Sbjct: 206 EKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFRE 265

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+  EN   +++T  SVL+A   +  L+ GK++H YI+RT +  +  V SAL DMY KC 
Sbjct: 266 MK-LENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCK 324

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +I  A  +F KM  ++VVSWTAM+  Y Q G  EE    FS++ K GI P+ FT   V++
Sbjct: 325 NIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVIS 384

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA+ A+ E G Q H      G   +   ++ALV +Y KCG++E+S ++FN +   D V+
Sbjct: 385 SCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVT 444

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT+L++GYAQ G  ++ +  FE +L  G +PD + F+GVL+AC+ AGLV+KG Q F S+ 
Sbjct: 445 WTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMI 504

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            +HG+    DHY C++DL +R+GR  EA + I+KMP  PD   WA+LL  CR +GN+D+ 
Sbjct: 505 NEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIG 564

Query: 449 KRAAEALFEIEPENPATYVTMANIYAS 475
           K AAE L E++P N A+YV ++++YA+
Sbjct: 565 KWAAEFLMELDPHNTASYVLLSSVYAA 591



 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 235/442 (53%), Gaps = 34/442 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y +L++ C +     + K +HSH+  +   P  F+ N L+  YAK G+I  A  +FD+M 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
             ++ S+NT++S ++K G + +   LFD MP+RD  SW ++ISGY       +++  Y +
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M   + S + N+ T S++L   S   C++LG++IHG++++ GF S   V S L DMY K 
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 208 GSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRYF 236
           G I+ AR++FD                               +M +RD +SWT+MI  + 
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           Q G   +   +F E+    ++ + +TF  VL AC    A + GKQVH Y+ R  Y    F
Sbjct: 252 QNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIF 311

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
            ASALV MY KC N+++++ VF  M   ++VSWT+++ GY QNG  ++A++ F  + K G
Sbjct: 312 VASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYG 371

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD      V+++C +   +++G Q FH+     GL         +V L  + G   ++
Sbjct: 372 IEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDS 430

Query: 417 EDVISKMPMKPDKFLWASLLGG 438
             + +++  K D+  W +L+ G
Sbjct: 431 HRLFNEISFK-DEVTWTALVSG 451



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 34/211 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P      S+I  C    +LEEG + H+   +SG    + +SN L+ +Y KCG+I D+  L
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRL 433

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+E+  +D  ++  ++SG+ + G   +   LF+ M          +  G     +P    
Sbjct: 434 FNEISFKDEVTWTALVSGYAQFGKANETIGLFESM----------LAHGL----KP---- 475

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI-HGYIMRTGFDSDEVVWSALSD 202
                         +K T   VLSA S    +  G +I    I   G    +  ++ + D
Sbjct: 476 --------------DKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMID 521

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMI 232
           ++ + G I EAR   +KM    D +SW  ++
Sbjct: 522 LFSRAGRIEEARNFINKMPFSPDAISWATLL 552


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/465 (41%), Positives = 298/465 (64%), Gaps = 7/465 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK+A   L++I+      +S+++  C + R ++ G++++  +   GF   VF+ + L+DM
Sbjct: 129 LKDAAMNLNRIT------FSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDM 182

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y K G I DA+  FDEM ER+V   NTMI+G  + G +E+++ LF  + +RD+ SWT MI
Sbjct: 183 YTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMI 242

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +G ++     EALD++R M+       ++FT  SVL+A  ++  L  GK+IH Y++RT  
Sbjct: 243 TGLMQNGLEREALDMFREMR-LAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDH 301

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             +  V SAL DMY KC SI  A  +F +M  ++V+SWTAM+  Y Q G  EE   +F E
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFE 361

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + ++G+ P+ FT   V+++CA+ A+ E G Q H      G   +   ++AL+ +Y KCG+
Sbjct: 362 MQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGS 421

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
            ENS ++F  M   D VSWT+L+AGYAQ G  ++ +  FE +L  G +PD + F+GVL+A
Sbjct: 422 TENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSA 481

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+ AGLV+KGLQYF S+ ++HG+    DH  CI+DLL R+GR  EA + I+ MP  PD  
Sbjct: 482 CSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVV 541

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            WA+LL  CR+HG++++ K AA++L  +EP+NPA+YV ++++YAS
Sbjct: 542 GWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYAS 586



 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 238/445 (53%), Gaps = 33/445 (7%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S + Y+SL++ C +++   + KK+H  +  +  +P  F+SN L+  Y K GN++ A  +F
Sbjct: 4   SSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVF 63

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           D + + ++ S+NT++S ++K G L Q + +F+ MP RD  SW   ISGY  Y    +A+ 
Sbjct: 64  DHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVR 123

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           +Y++M        N+ T S++L   S  +C+ LG++I+G I++ GF SD  V S L DMY
Sbjct: 124 VYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMY 183

Query: 205 GKCGSINEARQIFDKMVDRDVV-------------------------------SWTAMIG 233
            K G I +A++ FD+M +R+VV                               SWT MI 
Sbjct: 184 TKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMIT 243

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
              Q G   E   +F E+  +G   + FTF  VL AC    A   GKQ+H Y+ R  +  
Sbjct: 244 GLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKD 303

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F  SALV MYSKC ++++++ VF  MP+ +++SWT+++ GY QNG  ++A++ F  + 
Sbjct: 304 NVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQ 363

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           ++G +PD      V+++C +   +++G Q FH      GL         ++ L  + G  
Sbjct: 364 RNGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGST 422

Query: 414 HEAEDVISKMPMKPDKFLWASLLGG 438
             +  + ++M ++ D+  W +LL G
Sbjct: 423 ENSHRLFTEMNIR-DEVSWTALLAG 446


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/437 (41%), Positives = 284/437 (64%), Gaps = 3/437 (0%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +RAL  GK+ H  +   GF    F+ + L+DMYAK   + DA+  FDE+  ++V  YNTM
Sbjct: 155 DRAL--GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTM 212

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G  +   +E+AR LF+ M  RD+ +WT M++G+ +     EAL+++R M+ F+    +
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMR-FQGIAID 271

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++T  S+L+A  A+  L  GK+IH YI+RT +D +  V SAL DMY KC SI  A  +F 
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFR 331

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M  ++++SWTA+I  Y Q G  EE   +FSE+ + GI P+ +T   V+++CA+ A+ E 
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEE 391

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G Q H      G   Y   ++ALV +Y KCG++E++ ++F+ M   D VSWT+L++GYAQ
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQ 451

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G   + ++ FE +L  G +PD + F+GVL+AC+ AG V+KG  YFHS+++ HG+    D
Sbjct: 452 FGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDD 511

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY C++DL +RSG+  EAE+ I +MPM PD   W +LL  CR+ G++++ K AAE L EI
Sbjct: 512 HYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEI 571

Query: 459 EPENPATYVTMANIYAS 475
           +P+NPA+YV + +++A+
Sbjct: 572 DPQNPASYVLLCSMHAA 588



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 219/450 (48%), Gaps = 34/450 (7%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           +S P  S Y++L+    +      G      L++    P  ++ N LL  Y K G  + A
Sbjct: 1   MSRPLSSQYAALLSAAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARA 60

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           + +FD M   ++ +YN ++S       L     LF  M QRD  S+ A+I+G+       
Sbjct: 61  RRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHA 120

Query: 141 EALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           +A+ +Y  +   ++SV  ++ T+S+++ A SA+    LGK+ H  I+R GF ++  V S 
Sbjct: 121 QAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSP 180

Query: 200 LSDMYGK-------------------------------CGSINEARQIFDKMVDRDVVSW 228
           L DMY K                               C  + EAR++F+ M DRD ++W
Sbjct: 181 LVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITW 240

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T M+  + Q G   E   +F  +   GI  + +TF  +L AC   +A E GKQ+H Y+ R
Sbjct: 241 TTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR 300

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
             YD   F  SALV MYSKC +++ ++ VF  M   +++SWT+LI GY QNG  ++A+  
Sbjct: 301 TRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRV 360

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  + + G  PD      V+++C +   +++G Q FH +    GL +       +V L  
Sbjct: 361 FSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYG 419

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           + G   +A  +  +M    D+  W +L+ G
Sbjct: 420 KCGSIEDAHRLFDEMSFH-DQVSWTALVSG 448



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 170/334 (50%), Gaps = 38/334 (11%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL+I  ++     +I    + S++  C    ALE+GK++H+++  + +   VF+ + L+
Sbjct: 255 EALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALV 314

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY+KC +I  A+T+F  M  +++ S+  +I G+ + G  E+A  +F EM QRD      
Sbjct: 315 DMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEM-QRDGID--- 370

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                                        + +TL SV+S+ + +  L  G + H   + +
Sbjct: 371 ----------------------------PDDYTLGSVISSCANLASLEEGAQFHCLALVS 402

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G      V +AL  +YGKCGSI +A ++FD+M   D VSWTA++  Y Q GR +E   LF
Sbjct: 403 GLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLF 462

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQ-VHGYMTRIGYDPYSFAASALVHMYSK 307
            +++  G++P+  TF GVL+AC+     E G+   H      G  P     + ++ +YS+
Sbjct: 463 EKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSR 522

Query: 308 CGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
            G ++ +++    MP  PD + W +L++     G
Sbjct: 523 SGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 38/239 (15%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA+++  ++      P      S+I  C    +LEEG + H     SG    + +SN L
Sbjct: 355 EEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNAL 414

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y KCG+I DA  LFDEM   D  S+  ++SG+ + G  ++  +LF++M         
Sbjct: 415 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKM--------- 465

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-IHGYIM 186
                  +  +P                  +  T   VLSA S    +  G+   H    
Sbjct: 466 -----LAKGVKP------------------DGVTFIGVLSACSRAGFVEKGRSYFHSMQK 502

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEG 244
             G    +  ++ + D+Y + G + EA +   +M +  D + W  ++      G  E G
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIG 561


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/511 (38%), Positives = 312/511 (61%), Gaps = 38/511 (7%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYS----SLIQFCRQNRALEEGKKVHSHLKSSG 56
           AI  LC + +L EA+  L  ++     + S    SL+Q C  +RAL EGK+VH HLK +G
Sbjct: 30  AIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTG 89

Query: 57  FK-PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
            K PG F+SN L++MYAKCG   +A+ +FD+M  R++ S+N M+SG+ K G ++ AR LF
Sbjct: 90  LKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLF 149

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
           D+MP++D  SW  M+  + +     EAL  Y   +       N F+ + VL+    ++ +
Sbjct: 150 DKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQL-GIQCNGFSFAGVLTVCVKLKEV 208

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV---------- 225
            L +++HG I+  GF S+ V+ S++ D Y KCG + +AR++FD+M  RDV          
Sbjct: 209 GLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268

Query: 226 ---------------------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
                                VSWTA+I  Y + G   +   LF++++   +RP+ FTF+
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFS 328

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PR 323
             L ACA  A+ + GKQ+H Y+ RI + P +   SAL+ MYSKCG++   +KVF+ M  +
Sbjct: 329 SCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNK 388

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V W ++I+  AQ+G  ++A++  + +++SG +PD I FV +L AC+H+GLV +GL +
Sbjct: 389 LDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNF 448

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+   +G+  + +HYAC++DLL R+G F E  D + KMP KPD  +W +LLG CRIHG
Sbjct: 449 FESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHG 508

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +++L ++AAE L E+EP++   YV +++IYA
Sbjct: 509 HIELGRKAAERLIELEPQSSTAYVLLSSIYA 539


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/462 (40%), Positives = 288/462 (62%), Gaps = 1/462 (0%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +++++    P+   +  L++ C +  +  EGK++H+H+   GF   VFI   L++MYA+ 
Sbjct: 118 VRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQS 177

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G +++AQ +FD+   RD  S+  +I+G+   G +++AR LFDEMP +D  SW AMI+GY 
Sbjct: 178 GEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYA 237

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +  +  EAL L+  M+   N   N+ T+ SVLSA +    L LG  +  +I   G  S+ 
Sbjct: 238 QMGRSKEALLLFEDMRK-ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNL 296

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            + +AL DMY KCG +  AR++FD M++RDV+SW  MIG Y      +E  ALF E++ S
Sbjct: 297 KLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLAS 356

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G+ P   TF  +L +CA   A +LGK +H Y+ +      +  +++L+ +Y+KCGN+  +
Sbjct: 357 GVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAA 416

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           ++VF+GM    L SW ++I G A +G  DKA E F  +   G +P+ I FVG+L+AC HA
Sbjct: 417 RQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHA 476

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLVD G Q+F S+ + + ++  + HY C++DLL R+G F EAE ++  M +KPD  +W S
Sbjct: 477 GLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGS 536

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LLG CR HG ++L +  AE LFE+EP+NP  YV ++NIYA A
Sbjct: 537 LLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGA 578



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 210/458 (45%), Gaps = 72/458 (15%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HPS  + S     C+  R     K++H+H+  +G    +F  + L++             
Sbjct: 30  HPSLKLLSK----CQSIRTF---KQIHAHIIKTGLHNTLFALSKLIEF------------ 70

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                            S  ++ G +  A +LF+ + + + F W +MI G      P  A
Sbjct: 71  -----------------SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALA 113

Query: 143 LDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           L  + RM+  +     N +T   +L + + +     GK+IH ++++ GF SD  + ++L 
Sbjct: 114 LVFFVRMI--YSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLI 171

Query: 202 DMYGKCGSIN-------------------------------EARQIFDKMVDRDVVSWTA 230
           +MY + G +N                                ARQ+FD+M  +DVVSW A
Sbjct: 172 NMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNA 231

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q GR +E   LF ++ K+ + PN  T   VL+ACA   A +LG  +  ++   G
Sbjct: 232 MIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRG 291

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                   +AL+ MYSKCG+++ ++++F+ M   D++SW  +I GY       +AL  F 
Sbjct: 292 LCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFR 351

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +L SG +P  I F+ +L +C H G +D G ++ H+   K+  + +      ++DL A+ 
Sbjct: 352 EMLASGVEPTEITFLSILPSCAHLGAIDLG-KWIHAYINKNFNSVSTSLSTSLIDLYAKC 410

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           G    A  V   M +K     W +++ G  +HG  D A
Sbjct: 411 GNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQADKA 447



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVHM--YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           KQ+H ++ + G     FA S L+     S+ G++  +  +FN +  P+L  W S+I G +
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +  P  AL +F  ++ SG +P+   F  +L +C       +G Q  H+   K G     
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ-IHAHVLKLGFVSDV 164

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
             +  ++++ A+SG  + A+ V  +   + D   + +L+ G  + G +D   RA +   E
Sbjct: 165 FIHTSLINMYAQSGEMNNAQLVFDQSNFR-DAISFTALIAGYALWGYMD---RARQLFDE 220

Query: 458 IEPENPATYVTMANIYA 474
           +  ++  ++  M   YA
Sbjct: 221 MPVKDVVSWNAMIAGYA 237


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/437 (43%), Positives = 284/437 (64%), Gaps = 3/437 (0%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +RAL  G++VH  +   GF    F  + L+DMYAK G I DA+ +FDEM  ++V  YNTM
Sbjct: 164 DRAL--GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTM 221

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G  +   +E+AR +F+ M  RD+ +WT M++G  +     EALD++R M+  E    +
Sbjct: 222 ITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRA-EGVGID 280

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++T  S+L+A  A+     GK+IH Y +RT +D +  V SAL DMY KC SI  A  +F 
Sbjct: 281 QYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFR 340

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M  ++++SWTAMI  Y Q G  EE   +FSE+   GI+PN FT   V+++CA+ A+ E 
Sbjct: 341 RMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEE 400

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G Q H      G  PY   +SALV +Y KCG++E++ ++F+ MP  D VS+T+L++GYAQ
Sbjct: 401 GAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQ 460

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G   + ++ FE +L  G +P+ + F+GVL+AC+ +GLV+KG  YFHS+++ HG+    D
Sbjct: 461 FGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDD 520

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY C++DL +RSGR  EAE+ I +MP  PD   WA+LL  CR+ G++++ K AAE L + 
Sbjct: 521 HYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKT 580

Query: 459 EPENPATYVTMANIYAS 475
           +P+NPA+YV + +++AS
Sbjct: 581 DPQNPASYVLLCSMHAS 597



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 205/424 (48%), Gaps = 39/424 (9%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111
           L++    P  ++ N LL  YA+ G +  A+ LFD M + ++ + N ++S       L   
Sbjct: 36  LRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDM 95

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS------NKFTLSSV 165
             LF  MPQRD  S+ A+I+G+     P  A   YR +   E  V       ++ T+S +
Sbjct: 96  DRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGM 155

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK------------------- 206
           + A SA+    LG+++H  IMR GF +    WS L DMY K                   
Sbjct: 156 VMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNV 215

Query: 207 ------------CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                       C  + EAR +F+ MVDRD ++WT M+    Q G + E   +F  +   
Sbjct: 216 VMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAE 275

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G+  + +TF  +L AC   AA E GKQ+H Y  R  YD   F  SALV MYSKC ++  +
Sbjct: 276 GVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLA 335

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + VF  M   +++SWT++I GY QNG  ++A+  F  +   G +P+      V+++C + 
Sbjct: 336 EAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANL 395

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             +++G Q FH +    GL       + +V L  + G   +A  +  +MP   D+  + +
Sbjct: 396 ASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFH-DQVSYTA 453

Query: 435 LLGG 438
           L+ G
Sbjct: 454 LVSG 457



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 176/358 (49%), Gaps = 50/358 (13%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      I    + S++  C    A EEGK++H++   + +   +F+ + L+
Sbjct: 264 EALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALV 323

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY+KC +I  A+ +F  M  +++ S+  MI G+ + G  E+A  +F EM Q D      
Sbjct: 324 DMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEM-QTDGIK--- 379

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                                        N FTL SV+S+ + +  L  G + H   + +
Sbjct: 380 ----------------------------PNDFTLGSVISSCANLASLEEGAQFHCMALVS 411

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G      V SAL  +YGKCGSI +A ++FD+M   D VS+TA++  Y Q G+ +E   LF
Sbjct: 412 GLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLF 471

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELG-------KQVHGYMTRIGYDPYSFAASAL 301
            +++  G++PN  TF GVL+AC+     E G       +Q HG +  +  D Y    + +
Sbjct: 472 EKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIV--LLDDHY----TCM 525

Query: 302 VHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + +YS+ G ++ +++    MPR PD + W +L++     G  +      E LLK+  Q
Sbjct: 526 IDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQ 583



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 50/255 (19%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA+++  ++      P+     S+I  C    +LEEG + H     SG +P + +S+ L
Sbjct: 364 EEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSAL 423

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y KCG+I DA  LFDEM   D  SY  ++SG+ + G  ++  +LF++M         
Sbjct: 424 VTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKM--------- 474

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-------KE 180
            ++ G     +P                  N  T   VLSA S    +  G       ++
Sbjct: 475 -LLKGV----KP------------------NGVTFIGVLSACSRSGLVEKGCSYFHSMQQ 511

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEG 239
            HG ++    D     ++ + D+Y + G + EA +   +M    D + W  ++      G
Sbjct: 512 DHGIVL---LDDH---YTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRG 565

Query: 240 RREEGFALFSELIKS 254
             E G      L+K+
Sbjct: 566 DMEIGKWAAENLLKT 580


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/437 (43%), Positives = 279/437 (63%), Gaps = 3/437 (0%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +RAL  G  VH  +   GF    F+ + L+DMYAK G I DA+ +F EM+ + V  YNT+
Sbjct: 161 DRAL--GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G  +   +E A+ LF  M  RD+ +WT M++G  +    +EALD++R M+  E    +
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA-EGVGID 277

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++T  S+L+A  A+  L  GK+IH YI RT ++ +  V SAL DMY KC SI  A  +F 
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M  R+++SWTAMI  Y Q    EE    FSE+   GI+P+ FT   V+++CA+ A+ E 
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G Q H      G   Y   ++ALV +Y KCG++E++ ++F+ M   D VSWT+L+ GYAQ
Sbjct: 398 GAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQ 457

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G   + ++ FE +L +G +PD + F+GVL+AC+ AGLV+KG  YF S+++ HG+    D
Sbjct: 458 FGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDD 517

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY C++DL +RSGRF EAE+ I +MP  PD F WA+LL  CR+ GN+++ K AAE L E 
Sbjct: 518 HYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLET 577

Query: 459 EPENPATYVTMANIYAS 475
           +P+NPA+YV + +++A+
Sbjct: 578 DPQNPASYVLLCSMHAA 594



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 206/418 (49%), Gaps = 33/418 (7%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111
           LK+    P  F+ N LL  YAK G ++ A+ +FDEM + ++ + N ++S       +   
Sbjct: 39  LKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDM 98

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
             LF  MP+RD  S+ A+I+G+     P  ++ LYR +   E+    + TLS+++   SA
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASA 158

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK------------ 219
           +    LG  +H  ++R GF +   V S L DMY K G I +AR++F +            
Sbjct: 159 LSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 220 -------------------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
                              MVDRD ++WT M+    Q G + E   +F  +   G+  + 
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +TF  +L AC   AA E GKQ+H Y+TR  Y+   F  SALV MYSKC ++  ++ VF  
Sbjct: 279 YTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   +++SWT++I GY QN   ++A+  F  +   G +PD      V+++C +   +++G
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            Q FH +    GL         +V L  + G   +A  +  +M    D+  W +L+ G
Sbjct: 399 AQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTG 454



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 163/328 (49%), Gaps = 38/328 (11%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      I    + S++  C    ALEEGK++H+++  + ++  VF+ + L+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALV 320

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY+KC +I  A+ +F  M  R++ S+  MI G+ +    E+A   F EM Q D      
Sbjct: 321 DMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEM-QMDGIK--- 376

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                                        + FTL SV+S+ + +  L  G + H   + +
Sbjct: 377 ----------------------------PDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G      V +AL  +YGKCGSI +A ++FD+M   D VSWTA++  Y Q G+ +E   LF
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSK 307
            +++ +G++P+  TF GVL+AC+     E G      M +  G  P     + ++ +YS+
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 308 CGNVENSKKVFNGMPR-PDLVSWTSLIA 334
            G  + +++    MP  PD   W +L++
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLS 556


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/437 (42%), Positives = 285/437 (65%), Gaps = 3/437 (0%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +RAL  G++VH  +   GF    F  + L+DMYAK G I DA+ +FDEM+ ++V   NTM
Sbjct: 160 DRAL--GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTM 217

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G  +   + +AR LF+ + +RD+ +WT M++G  +     EALD++R M+  E    +
Sbjct: 218 ITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRA-EGVGID 276

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++T  S+L+A  A+  L  GK+IH YI RT ++ +  V SAL DMY KC S+  A  +F 
Sbjct: 277 QYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFR 336

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M+ ++++SWTAMI  Y Q G  EE   +FSE+ + GI+P+ FT   V+++CA+ A+ E 
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEE 396

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G Q H      G  PY   ++ALV +Y KCG++E++ ++F+ M   D VSWT+L+ GYAQ
Sbjct: 397 GAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQ 456

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G   + ++ FE +L  G +PD + F+GVL+AC+ +GLVDKG  YFHS+++ H +    D
Sbjct: 457 FGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDD 516

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY C++DL +RSG   +AE+ I +MP  PD F WA+LL  CR+ G++++ K AAE L ++
Sbjct: 517 HYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKL 576

Query: 459 EPENPATYVTMANIYAS 475
           +P+NPA+YV + +++AS
Sbjct: 577 DPQNPASYVLLCSMHAS 593



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 202/410 (49%), Gaps = 34/410 (8%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            ++ N LL  YA  G +  A+ +FD M  R++ + N+++S   + G +     LF  +PQ
Sbjct: 46  TYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQ 105

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGK 179
           RD  S+ A+++G+ R      A   Y  +   E  V  ++ T+S V+   SA+    LG+
Sbjct: 106 RDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGR 165

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD--------------------K 219
           ++H  I+R GF +     S L DMY K G I +AR++FD                    K
Sbjct: 166 QVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCK 225

Query: 220 MV-----------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           MV           +RD ++WT M+    Q G   E   +F  +   G+  + +TF  +L 
Sbjct: 226 MVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILT 285

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC   AA E GKQ+H Y+TR  Y+   F  SALV MYSKC +V  ++ VF  M   +++S
Sbjct: 286 ACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIIS 345

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT++I GY QNG  ++A+  F  + + G +PD      V+++C +   +++G Q FH + 
Sbjct: 346 WTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLA 404

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              GL         +V L  + G   +A  +  +M    D+  W +L+ G
Sbjct: 405 LVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVMG 453



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 167/334 (50%), Gaps = 38/334 (11%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      I    + S++  C    ALEEGK++H+++  + ++  VF+ + L+
Sbjct: 260 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALV 319

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY+KC ++  A+ +F  M  +++ S+  MI G+ + G  E+A  +F EM QRD      
Sbjct: 320 DMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEM-QRDGIK--- 375

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                                        + FTL SV+S+ + +  L  G + H   + +
Sbjct: 376 ----------------------------PDDFTLGSVISSCANLASLEEGAQFHCLALVS 407

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G      V +AL  +YGKCGSI +A ++FD+M   D VSWTA++  Y Q G+ +E   LF
Sbjct: 408 GLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLF 467

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQ-VHGYMTRIGYDPYSFAASALVHMYSK 307
            +++  G++P+  TF GVL+AC+     + G+   H         P     + ++ +YS+
Sbjct: 468 EKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSR 527

Query: 308 CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNG 340
            G ++ +++    MPR PD   W +L++     G
Sbjct: 528 SGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRG 561



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 4/111 (3%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA+++  ++      P      S+I  C    +LEEG + H     SG +P V +SN L
Sbjct: 360 EEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNAL 419

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           + +Y KCG+I DA  LFDEM   D  S+  ++ G+ + G  ++  +LF++M
Sbjct: 420 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKM 470


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/437 (43%), Positives = 279/437 (63%), Gaps = 3/437 (0%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +RAL  G  VH  +   GF    F+ + L+DMYAK G I DA+ +F EM+ + V  YNT+
Sbjct: 161 DRAL--GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G  +   +E A+ LF  M  RD+ +WT M++G  +    +EALD++R M+  E    +
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA-EGVGID 277

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++T  S+L+A  A+  L  GK+IH YI RT ++ +  V SAL DMY KC SI  A  +F 
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M  R+++SWTAMI  Y Q    EE    FSE+   GI+P+ FT   V+++CA+ A+ E 
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G Q H      G   Y   ++ALV +Y KCG++E++ ++F+ M   D VSWT+L+ GYAQ
Sbjct: 398 GAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQ 457

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G   + ++ FE +L +G +PD + F+GVL+AC+ AGLV+KG  YF S+++ HG+    D
Sbjct: 458 FGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDD 517

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY C++DL +RSGRF EAE+ I +MP  PD F WA+LL  CR+ GN+++ K AAE L E 
Sbjct: 518 HYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLET 577

Query: 459 EPENPATYVTMANIYAS 475
           +P+NPA+YV + +++A+
Sbjct: 578 DPQNPASYVLLCSMHAA 594



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 206/418 (49%), Gaps = 33/418 (7%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111
           LK+    P  F+ N LL  YAK G ++ A+ +FDEM + ++ + N ++S       +   
Sbjct: 39  LKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDM 98

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
             LF  MP+RD  S+ A+I+G+     P  ++ LYR +   E+    + TLS+++   SA
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASA 158

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK------------ 219
           +    LG  +H  ++R GF +   V S L DMY K G I +AR++F +            
Sbjct: 159 LSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 220 -------------------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
                              MVDRD ++WT M+    Q G + E   +F  +   G+  + 
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +TF  +L AC   AA E GKQ+H Y+TR  Y+   F  SALV MYSKC ++  ++ VF  
Sbjct: 279 YTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   +++SWT++I GY QN   ++A+  F  +   G +PD      V+++C +   +++G
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            Q FH +    GL         +V L  + G   +A  +  +M    D+  W +L+ G
Sbjct: 399 AQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTG 454



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 173/352 (49%), Gaps = 38/352 (10%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      I    + S++  C    ALEEGK++H+++  + ++  VF+ + L+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALV 320

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY+KC +I  A+ +F  M  R++ S+  MI G+ +    E+A   F EM Q D      
Sbjct: 321 DMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEM-QMDGI---- 375

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                    +P                  + FTL SV+S+ + +  L  G + H   + +
Sbjct: 376 ---------KP------------------DDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G      V +AL  +YGKCGSI +A ++FD+M   D VSWTA++  Y Q G+ +E   LF
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSK 307
            +++ +G++P+  TF GVL+AC+     E G      M +  G  P     + ++ +YS+
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 308 CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            G  + +++    MP  PD   W +L++     G  +      E LL++  Q
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/446 (41%), Positives = 285/446 (63%), Gaps = 1/446 (0%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S+++    +   +  G +VH H+   GF+  VF+ + L+DMY+K G +  A+  FDEM E
Sbjct: 146 STMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPE 205

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           ++V  YNT+I+G  +   +E +R LF +M ++D+ SWTAMI+G+ +     EA+DL+R M
Sbjct: 206 KNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM 265

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +  EN   +++T  SVL+A   +  L+ GK++H YI+RT +  +  V SAL DMY KC S
Sbjct: 266 R-LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKS 324

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I  A  +F KM  ++VVSWTAM+  Y Q G  EE   +F ++  +GI P+ FT   V+++
Sbjct: 325 IKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISS 384

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA+ A+ E G Q H      G   +   ++ALV +Y KCG++E+S ++F+ M   D VSW
Sbjct: 385 CANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSW 444

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T+L++GYAQ G  ++ L  FE +L  G +PD + F+GVL+AC+ AGLV KG Q F S+ +
Sbjct: 445 TALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIK 504

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +H +    DHY C++DL +R+GR  EA   I+KMP  PD   WASLL  CR H N+++ K
Sbjct: 505 EHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGK 564

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            AAE+L ++EP N A+Y+ +++IYA+
Sbjct: 565 WAAESLLKLEPHNTASYILLSSIYAA 590



 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 229/459 (49%), Gaps = 39/459 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L++ CR      + KK+H H+  +   P +F+ N L+  YAK   I+ A+ +FD+M 
Sbjct: 18  YCELLKHCR------DTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMP 71

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +R++ S+NT++S ++K   L +   +F  MP RD  SW ++IS Y      ++++  Y +
Sbjct: 72  QRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNL 131

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK-- 206
           M        N+  LS++L   S   C+ LG ++HG++++ GF S   V S L DMY K  
Sbjct: 132 MLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTG 191

Query: 207 -----------------------------CGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
                                        C  I ++RQ+F  M ++D +SWTAMI  + Q
Sbjct: 192 LVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQ 251

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   E   LF E+    +  + +TF  VL AC    A + GKQVH Y+ R  Y    F 
Sbjct: 252 NGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFV 311

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            SALV MY KC ++++++ VF  M   ++VSWT+++ GY QNG  ++A++ F  +  +G 
Sbjct: 312 GSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGI 371

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD      V+++C +   +++G Q FH      GL         +V L  + G   ++ 
Sbjct: 372 EPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
            + S+M    D+  W +L+ G    G  +   R  E++ 
Sbjct: 431 RLFSEMSY-VDEVSWTALVSGYAQFGKANETLRLFESML 468



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 160/308 (51%), Gaps = 34/308 (11%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S++  C    AL+EGK+VH+++  + ++  +F+ + L+DMY KC +I  A+T+F +M 
Sbjct: 277 FGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMN 336

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            ++V S+  M+ G+ + G  E+A  +F +M                  N  IE  D    
Sbjct: 337 CKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQ-----------------NNGIEPDD---- 375

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                      FTL SV+S+ + +  L  G + H   + +G  S   V +AL  +YGKCG
Sbjct: 376 -----------FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCG 424

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SI ++ ++F +M   D VSWTA++  Y Q G+  E   LF  ++  G +P+  TF GVL+
Sbjct: 425 SIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLS 484

Query: 269 ACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDL 326
           AC+     + G Q+   M +     P     + ++ ++S+ G +E ++K  N MP  PD 
Sbjct: 485 ACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDA 544

Query: 327 VSWTSLIA 334
           + W SL++
Sbjct: 545 IGWASLLS 552



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 38/227 (16%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA++I   + +    P      S+I  C    +LEEG + H     SG    + +SN L
Sbjct: 357 EEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNAL 416

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y KCG+I D+  LF EM   D  S+  ++SG+ + G   +   LF+ M         
Sbjct: 417 VTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESM--------- 467

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI-HGYIM 186
            +  G+    +P                  +K T   VLSA S    ++ G +I    I 
Sbjct: 468 -LAHGF----KP------------------DKVTFIGVLSACSRAGLVQKGNQIFESMIK 504

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMI 232
                  E  ++ + D++ + G + EAR+  +KM    D + W +++
Sbjct: 505 EHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++++ ++  ++S+     +++L+    Q     E  ++   + + GFKP       +L  
Sbjct: 426 IEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSA 485

Query: 71  YAKCGNISDAQTLFDEM-QERDVCS----YNTMISGFTKGGSLEQARNLFDEMP-QRDNF 124
            ++ G +     +F+ M +E  +      Y  MI  F++ G LE+AR   ++MP   D  
Sbjct: 486 CSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAI 545

Query: 125 SWTAMISGYVRYNQPIE 141
            W +++S   R+++ +E
Sbjct: 546 GWASLLSS-CRFHRNME 561


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/437 (41%), Positives = 280/437 (64%), Gaps = 3/437 (0%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +RAL  G++ H  +   GF    F+ + L+ MYAK G I DA+ +FDEM  ++V  YNTM
Sbjct: 155 DRAL--GRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTM 212

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G  +   +E+AR LF+ M  RD  +WT M++G+ +     +AL+ +R M+ F+    +
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMR-FQGIAID 271

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++T  S+L+A  A+  L  GK+IH YI+RT +D +  V SAL DMY KC SI  A   F 
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFR 331

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M  ++++SWTA+I  Y Q G  EE   +FSE+ + GI P+ FT   V+++CA+ A+ E 
Sbjct: 332 RMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEE 391

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G Q H      G   Y   ++ALV +Y KCG++E++ ++F+ M   D VSWT+L+ GYAQ
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQ 451

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G   + ++ FE +L    +PD + F+GVL+AC+ AG V+KG  YFHS+++ HG+    D
Sbjct: 452 FGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDD 511

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY C++DL +RSGR  EAE+ I +MPM PD   W +LL  CR+ G++++ + AAE L EI
Sbjct: 512 HYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEI 571

Query: 459 EPENPATYVTMANIYAS 475
           +P+NPA+YV + +++A+
Sbjct: 572 DPQNPASYVLLCSMHAT 588



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 215/450 (47%), Gaps = 34/450 (7%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           +S P  S Y++L+    +      G      L++    P   + N LL  Y K G  + A
Sbjct: 1   MSRPLSSQYAALLSAAARTEPHAAGALHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARA 60

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           + +FD     ++ +YN ++S       L+   +LF  M QRD  S+ A+I+G+       
Sbjct: 61  RRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHA 120

Query: 141 EALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            A+ LY  +    +SV  ++ T+S+++ A SA+    LG++ H  I+R GF  +  V S 
Sbjct: 121 RAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSP 180

Query: 200 LSDMYGKCGSINEARQIFDK-------------------------------MVDRDVVSW 228
           L  MY K G I +A+++FD+                               M DRD ++W
Sbjct: 181 LVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITW 240

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T M+  + Q G   +    F  +   GI  + +TF  +L AC   +A E GKQ+H Y+ R
Sbjct: 241 TTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR 300

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
             YD   F  SALV MYSKC +++ ++  F  M   +++SWT+LI GY QNG  ++A+  
Sbjct: 301 THYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRV 360

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  + + G  PD      V+++C +   +++G Q FH +    GL +       +V L  
Sbjct: 361 FSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYG 419

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           + G   +A  +  +M +  D+  W +L+ G
Sbjct: 420 KCGSIEDAHRLFDEM-LFHDQVSWTALVTG 448



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 34/314 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S++  C    ALE+GK++H+++  + +   VF+ + L+DMY+KC +I  A+T F  M 
Sbjct: 275 FGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS 334

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            +++ S+  +I G+ + G  E+A  +F EM QRD                          
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSEM-QRDGID----------------------- 370

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    + FTL SV+S+ + +  L  G + H   + +G      V +AL  +YGKCG
Sbjct: 371 --------PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCG 422

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SI +A ++FD+M+  D VSWTA++  Y Q GR +E   LF +++   ++P+  TF GVL+
Sbjct: 423 SIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLS 482

Query: 269 ACADHAAEELG-KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDL 326
           AC+     E G    H      G  P     + ++ +YS+ G ++ +++    MP  PD 
Sbjct: 483 ACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDA 542

Query: 327 VSWTSLIAGYAQNG 340
           + W +L++     G
Sbjct: 543 IGWGTLLSACRLRG 556



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 38/239 (15%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA+++  ++      P      S+I  C    +LEEG + H     SG    + +SN L
Sbjct: 355 EEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNAL 414

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y KCG+I DA  LFDEM   D  S+  +++G+ + G  ++  +LF++M  +D     
Sbjct: 415 VTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKD----- 469

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-KEIHGYIM 186
                     +P                  +  T   VLSA S    +  G    H    
Sbjct: 470 ---------VKP------------------DGVTFIGVLSACSRAGFVEKGCSYFHSMQK 502

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEG 244
             G    +  ++ + D+Y + G + EA +   +M +  D + W  ++      G  E G
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIG 561


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 296/538 (55%), Gaps = 75/538 (13%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +AL++ +Q+     +P   ++ S+I+ C     L+ G+KVH  + + GF+  V +   L 
Sbjct: 103 KALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALA 162

Query: 69  DMYAKCGNIS-------------------------------DAQTLFDEMQ--------- 88
            MY KCG++                                +A  LF EMQ         
Sbjct: 163 SMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSS 222

Query: 89  ------------------------------ERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
                                         E DV   N +++ + K G++  A  LF+ M
Sbjct: 223 TLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERM 282

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P RD  SW A+I GY   +Q  EAL  +  MQ       N  T+ SVL A + +  L  G
Sbjct: 283 PIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ-VRGIKPNSITMVSVLPACAHLFALEQG 341

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++IHGY +R+GF+S++VV +AL +MY KCG++N A ++F++M  ++VV+W A+I  Y Q 
Sbjct: 342 QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQH 401

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G   E  ALF E+   GI+P++F    VL ACA   A E GKQ+HGY  R G++      
Sbjct: 402 GHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG 461

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + LV +Y+KCGNV  ++K+F  MP  D+VSWT++I  Y  +G  + AL  F  + ++GT+
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTK 521

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            DHI F  +LTAC+HAGLVD+GLQYF  +K  +GL    +HYAC+VDLL R+G   EA  
Sbjct: 522 LDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANG 581

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +I  M ++PD  +W +LLG CRIH N++L ++AA+ LFE++P+N   YV ++NIYA A
Sbjct: 582 IIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEA 639



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 4/331 (1%)

Query: 115 FDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           F +   R+N   W   I GYV+     +AL LY  MQ    +  +K    SV+ A  +  
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGIN-PDKLVFLSVIKACGSQS 134

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            L+ G+++H  I+  GF+SD +V +AL+ MY KCGS+  ARQ+FD+M  RDVVSW A+I 
Sbjct: 135 DLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            Y Q G+  E  ALFSE+  +GI+PN+ T   V+  CA   A E GKQ+H Y  R G + 
Sbjct: 195 GYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES 254

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
                + LV+MY+KCGNV  + K+F  MP  D+ SW ++I GY+ N    +AL +F  + 
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
             G +P+ I  V VL AC H   +++G Q  H    + G          +V++ A+ G  
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQG-QQIHGYAIRSGFESNDVVGNALVNMYAKCGNV 373

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           + A  +  +MP K +   W +++ G   HG+
Sbjct: 374 NSAYKLFERMP-KKNVVAWNAIISGYSQHGH 403


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/437 (42%), Positives = 277/437 (63%), Gaps = 3/437 (0%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +RAL  G  VH  +   GF    F+ + L+DMYAK G I DA+ +F EM+ + V  YNT+
Sbjct: 161 DRAL--GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G  +   +E A+ LF  M  RD+ +WT M++G  +    +EALD++R M+  E    +
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA-EGVGID 277

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++T  S+L+A  A+     GK+IH YI RT ++ +  V SAL DMY KC SI  A  +F 
Sbjct: 278 QYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M  R+++SWTAMI  Y Q    EE    FSE+   GI+P+ FT   V+++CA+ A+ E 
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G Q H      G   Y   ++ALV +Y KCG++E++ ++F+ M   D VSWT+L+ GYAQ
Sbjct: 398 GAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQ 457

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G   + ++ FE +L +G +PD + F+GVL+AC+ AGLV+KG  YF S+++ H +    D
Sbjct: 458 FGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDD 517

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY C++DL +RSGRF EAE+ I +MP  PD F WA+LL  CR+ GN+++ K AAE L E 
Sbjct: 518 HYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLET 577

Query: 459 EPENPATYVTMANIYAS 475
           +P+NPA+YV + +++A+
Sbjct: 578 DPQNPASYVLLCSMHAA 594



 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 206/418 (49%), Gaps = 33/418 (7%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111
           LK+    P  F+ N LL  YAK G ++ A+ +FDEM + ++ + N ++S       +   
Sbjct: 39  LKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDM 98

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
             LF  MP+RD  S+ A+I+G+     P  ++ LYR +   E+    + TLS+++   SA
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASA 158

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK------------ 219
           +    LG  +H  ++R GF +   V S L DMY K G I +AR++F +            
Sbjct: 159 LSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 220 -------------------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
                              MVDRD ++WT M+    Q G + E   +F  +   G+  + 
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +TF  +L AC   AA E GKQ+H Y+TR  Y+   F  SALV MYSKC ++  ++ VF  
Sbjct: 279 YTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   +++SWT++I GY QN   ++A+  F  +   G +PD      V+++C +   +++G
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            Q FH +    GL         +V L  + G   +A  +  +M    D+  W +L+ G
Sbjct: 399 AQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTG 454



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 173/353 (49%), Gaps = 40/353 (11%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      I    + S++  C    A EEGK++H+++  + ++  VF+ + L+
Sbjct: 261 EALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALV 320

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY+KC +I  A+ +F  M  R++ S+  MI G+ +    E+A   F EM Q D      
Sbjct: 321 DMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEM-QMDGI---- 375

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                    +P                  + FTL SV+S+ + +  L  G + H   + +
Sbjct: 376 ---------KP------------------DDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G      V +AL  +YGKCGSI +A ++FD+M   D VSWTA++  Y Q G+ +E   LF
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD--PYSFAASALVHMYS 306
            +++ +G++P+  TF GVL+AC+     E G      M +  +D  P     + ++ +YS
Sbjct: 469 EKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQK-DHDIVPIDDHYTCMIDLYS 527

Query: 307 KCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + G  + +++    MP  PD   W +L++     G  +      E LL++  Q
Sbjct: 528 RSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/455 (41%), Positives = 283/455 (62%), Gaps = 4/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +  A +EGK++H H+   G +   F+   L++MYA+ G +  A+ +
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV 189

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +   RD  S+  +I+G+T  G L+ AR LF+E+P RD  SW AMI+GY +  +  EAL
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ M+   N   N+ T+ +VLSA +    L LG  +  +I   G  S+  + +AL DM
Sbjct: 250 AFFQEMKR-ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +++AR +F+ + ++D++SW  MIG Y      +E  ALF ++ +S + PN  TF
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A +LGK +H Y+ +  +G    S   S L+ MY+KCGN+E +K+VF GM
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTS-LIDMYAKCGNIEAAKQVFAGM 427

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I+G A +G  + ALE F  +   G +PD I FVGVL+AC+HAGLV+ G 
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           Q F S+ E + ++    HY C++DLL R+G F EAE ++  M MKPD  +W SLLG CR+
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L + AA+ LFE+EPENP  YV ++NIYA+A
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNIYATA 582



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 195/378 (51%), Gaps = 41/378 (10%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSS 164
           G+L  A  LF+ + Q + F W  MI G    + P+ A+D Y RM+        N +T   
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRML--LCGVEPNSYTFPF 137

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS--------------- 209
           +L + + +   + GK+IHG++++ G +SD  V ++L +MY + G                
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 210 ----------------INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
                           +++AR++F+++  RD VSW AMI  Y Q GR EE  A F E+ +
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           + + PN  T   VL+ACA   + ELG  V  ++   G        +AL+ MYSKCG+++ 
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ +F G+   D++SW  +I GY+      +AL  F  + +S  +P+ + FV +L AC +
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377

Query: 374 AGLVDKGLQYFHSIKEKH--GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF- 430
            G +D G ++ H+  +K   GLT T+  +  ++D+ A+ G    A+ V +   MKP    
Sbjct: 378 LGALDLG-KWIHAYIDKKFLGLTNTS-LWTSLIDMYAKCGNIEAAKQVFAG--MKPKSLG 433

Query: 431 LWASLLGGCRIHGNLDLA 448
            W +++ G  +HG+ ++A
Sbjct: 434 SWNAMISGLAMHGHANMA 451



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 171/363 (47%), Gaps = 57/363 (15%)

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM-- 203
           Y+++QN  +         ++LS   + Q L   K+IH  I++TG  + +   S L +   
Sbjct: 27  YKLLQNHPSL--------TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCA 75

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
               G+++ A  +F+ +   +   W  MI               +  ++  G+ PN++TF
Sbjct: 76  ISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTF 135

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN------------- 310
             +L +CA   A + GKQ+HG++ ++G +   F  ++L++MY++ G              
Sbjct: 136 PFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSL 195

Query: 311 ------------------VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                             +++++++F  +P  D VSW ++IAGYAQ+G  ++AL +F+ +
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
            ++   P+    V VL+AC  +G ++ G  +  S  E HGL         ++D+ ++ G 
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGD 314

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPENPATY 466
             +A D+   +  K D   W  ++GG   H N   + + A ALF       +EP N  T+
Sbjct: 315 LDKARDLFEGICEK-DIISWNVMIGGYS-HMN---SYKEALALFRKMQQSNVEP-NDVTF 368

Query: 467 VTM 469
           V++
Sbjct: 369 VSI 371


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/455 (41%), Positives = 283/455 (62%), Gaps = 4/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +  A +EGK++H H+   G +   F+   L++MYA+ G +  A+ +
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV 189

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +   RD  S+  +I+G+T  G L+ AR LF+E+P RD  SW AMI+GY +  +  EAL
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ M+   N   N+ T+ +VLSA +    L LG  +  +I   G  S+  + +AL DM
Sbjct: 250 AFFQEMKR-ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +++AR +F+ + ++D++SW  MIG Y      +E  ALF ++ +S + PN  TF
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A +LGK +H Y+ +  +G    S   S L+ MY+KCGN+E +K+VF GM
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTS-LIDMYAKCGNIEAAKQVFAGM 427

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I+G A +G  + ALE F  +   G +PD I FVGVL+AC+HAGLV+ G 
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           Q F S+ E + ++    HY C++DLL R+G F EAE ++  M MKPD  +W SLLG CR+
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L + AA+ LFE+EPENP  YV ++NIYA+A
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNIYATA 582



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 195/378 (51%), Gaps = 41/378 (10%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSS 164
           G+L  A  LF+ + Q + F W  MI G    + P+ A+D Y RM+        N +T   
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRML--LCGVEPNSYTFPF 137

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS--------------- 209
           +L + + +   + GK+IHG++++ G +SD  V ++L +MY + G                
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 210 ----------------INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
                           +++AR++F+++  RD VSW AMI  Y Q GR EE  A F E+ +
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           + + PN  T   VL+ACA   + ELG  V  ++   G        +AL+ MYSKCG+++ 
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ +F G+   D++SW  +I GY+      +AL  F  + +S  +P+ + FV +L AC +
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377

Query: 374 AGLVDKGLQYFHSIKEKH--GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF- 430
            G +D G ++ H+  +K   GLT T+  +  ++D+ A+ G    A+ V +   MKP    
Sbjct: 378 LGALDLG-KWIHAYIDKKFLGLTNTS-LWTSLIDMYAKCGNIEAAKQVFAG--MKPKSLG 433

Query: 431 LWASLLGGCRIHGNLDLA 448
            W +++ G  +HG+ ++A
Sbjct: 434 SWNAMISGLAMHGHANMA 451



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 171/363 (47%), Gaps = 57/363 (15%)

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM-- 203
           Y+++QN  +         ++LS   + Q L   K+IH  I++TG  + +   S L +   
Sbjct: 27  YKLLQNHPSL--------TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCA 75

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
               G+++ A  +F+ +   +   W  MI               +  ++  G+ PN++TF
Sbjct: 76  ISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTF 135

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN------------- 310
             +L +CA   A + GKQ+HG++ ++G +   F  ++L++MY++ G              
Sbjct: 136 PFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSL 195

Query: 311 ------------------VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                             +++++++F  +P  D VSW ++IAGYAQ+G  ++AL +F+ +
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
            ++   P+    V VL+AC  +G ++ G  +  S  E HGL         ++D+ ++ G 
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGD 314

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPENPATY 466
             +A D+   +  K D   W  ++GG   H N   + + A ALF       +EP N  T+
Sbjct: 315 LDKARDLFEGICEK-DIISWNVMIGGYS-HMN---SYKEALALFRKMQQSNVEP-NDVTF 368

Query: 467 VTM 469
           V++
Sbjct: 369 VSI 371


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 289/447 (64%), Gaps = 1/447 (0%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S+++        ++ G+++H  +   G++  +F+ + L+DMYAK G I+DA  +F+E+ 
Sbjct: 141 FSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIP 200

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E+++  YNTMI+G  +   + +A  LFD MP++D+ SWT +I+G  +     EA+D ++ 
Sbjct: 201 EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKE 260

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M   E    ++FT  SVL+A      L  GK+IH YI+RT +  +  V SAL DMY KC 
Sbjct: 261 M-GIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCR 319

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           ++  A  +F KM  ++V+SWTAM+  Y Q G  EE   +F ++ ++ I P+ FT   V++
Sbjct: 320 NVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVIS 379

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA+ A+ E G Q HG     G   +   ++AL+ +Y KCG++E++ ++F+ M   D VS
Sbjct: 380 SCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS 439

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT+L++GYAQ G  ++ +  FE +L  G  PD + FVGVL+AC+ AGLV+KG  YF  + 
Sbjct: 440 WTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMV 499

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           ++H +T   DHY C++DLL+R+GR  EA++ I++MP  PD   WA+LL  CR++GNL++ 
Sbjct: 500 KEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIG 559

Query: 449 KRAAEALFEIEPENPATYVTMANIYAS 475
           K AAE+L ++EP+NPA+Y+ +++IYA+
Sbjct: 560 KWAAESLHKLEPQNPASYILLSSIYAA 586



 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 224/445 (50%), Gaps = 33/445 (7%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S + Y++ ++FC + R   + KK+H  +  +   P  F+ N L++ Y K G++ +A+ +F
Sbjct: 4   SSNYYTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVF 63

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           D + + ++ S+NT++S ++K G L+  + +FD MP  D  SW +++SGY       E++ 
Sbjct: 64  DHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVR 123

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           +Y MM    +   N+ T S++L   S    + LG++IHG I + G+ S   V S L DMY
Sbjct: 124 VYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMY 183

Query: 205 GKCGSIN-------------------------------EARQIFDKMVDRDVVSWTAMIG 233
            K G IN                               EA Q+FD M ++D +SWT +I 
Sbjct: 184 AKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIIT 243

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
              Q G  +E    F E+   G   + FTF  VL AC    A + GKQ+H Y+ R  Y  
Sbjct: 244 GLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQD 303

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F  SAL+ MY KC NV+ ++ VF  M   +++SWT+++ GY QNG  ++A+  F  + 
Sbjct: 304 NIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQ 363

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           ++   PD      V+++C +   +++G Q FH      GL         ++ L  + G  
Sbjct: 364 RNEIHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSL 422

Query: 414 HEAEDVISKMPMKPDKFLWASLLGG 438
             A  +  +M ++ D+  W +L+ G
Sbjct: 423 EHAHQLFHEMKIR-DEVSWTALVSG 446



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           A+ I C+ +R        ++I HP      S+I  C    +LEEG + H    +SG    
Sbjct: 355 AVRIFCDMQR--------NEI-HPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICF 405

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           V +SN L+ +Y KCG++  A  LF EM+ RD  S+  ++SG+ + G   +  +LF+ M
Sbjct: 406 VTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETM 463


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/455 (38%), Positives = 283/455 (62%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A EEG+++H H+   G++P +++   L+ MYA+ G + DA  +
Sbjct: 64  PNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKV 123

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  +I+G+   G++  A+ +FDE+P +D  SW AMISGY       EAL
Sbjct: 124 FDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEAL 183

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +VLSA +  + + LG+++H +I   GF S+  + +AL D+
Sbjct: 184 ELFKEMMK-TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDL 242

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ +  +DVVSW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 243 YSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTI 302

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA--SALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A ++G+ +H Y+ +   D  +  +  ++L+ MY+KCG++E + +VFN M
Sbjct: 303 VSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM 362

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  +   + F  + K+G +PD I FVG+L+AC+H+G +D G 
Sbjct: 363 LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR 422

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+ + + +T   +HY C++DLL  SG F EA+++I  MPM+PD  +W SLL  CR 
Sbjct: 423 HIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRR 482

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGNL+LA+  A  L ++EPENP +YV ++NIYA+A
Sbjct: 483 HGNLELAESFARNLMKVEPENPGSYVLLSNIYATA 517



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 194/389 (49%), Gaps = 42/389 (10%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A ++F  + + +   W  M+ GY   + P+ AL LY +M +    + N +T   +L + +
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL-GLLPNSYTFPFLLKSCA 77

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK----------- 219
             +    G++IHG++++ G++ D  V ++L  MY + G + +A ++FD+           
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 220 ----------------MVD----RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
                           M D    +DVVSW AMI  Y + G  +E   LF E++K+ +RP+
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T   VL+ACA   + ELG+QVH ++   G+       +AL+ +YSKCG VE +  +F 
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           G+   D+VSW +LI GY    +  +AL  F+ +L+SG  P+ +  V +L AC H G +D 
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 380 GLQYFHSIKEK--HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           G ++ H   +K    +T        ++D+ A+ G    A  V + M  K     W +++ 
Sbjct: 318 G-RWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WNAMIF 375

Query: 438 GCRIHG----NLDLAKRAAEALFEIEPEN 462
           G  +HG      DL  R  +    IEP++
Sbjct: 376 GFAMHGRANAGFDLFSRMRKN--GIEPDD 402



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 141/292 (48%), Gaps = 40/292 (13%)

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A  +F  + + + + W  M+  Y           L+  +I  G+ PN++TF  +L +CA 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV--------------- 317
             A E G+Q+HG++ ++GY+P  +  ++L+ MY++ G +E++ KV               
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 318 ----------------FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
                           F+ +P  D+VSW ++I+GYA+ G   +ALE F+ ++K+  +PD 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
              V VL+AC  +  V+ G Q  HS  + HG          ++DL ++ G+   A  +  
Sbjct: 199 GTMVTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
            +  K D   W +L+GG   + +++L K A     E L   E  N  T V++
Sbjct: 258 GLSCK-DVVSWNTLIGG---YTHMNLYKEALLLFQEMLRSGESPNDVTIVSI 305



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 13/162 (8%)

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF  +  P+ + W +++ GYA +  P  AL+ + +++  G  P+   F  +L +C  +  
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 377 VDKGLQ-YFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            ++G Q + H +K    L Y  D Y    ++ + A++GR  +A  V  +   + D   + 
Sbjct: 82  FEEGQQIHGHVLK----LGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR-DVVSYT 136

Query: 434 SLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIYA 474
           +L+ G    GN+    R+A+ +F EI  ++  ++  M + YA
Sbjct: 137 ALITGYASSGNI----RSAQEMFDEIPVKDVVSWNAMISGYA 174


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/465 (40%), Positives = 278/465 (59%), Gaps = 5/465 (1%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+LH   +P+   + SL + C +++A  E K++H+H           +   L+ MY++ G
Sbjct: 117 QMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVG 176

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            +  A+ +FD+   RD  S+  +I+G+   G ++ AR LFDE+P +D  SW AMI+GYV+
Sbjct: 177 ELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQ 236

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
             +  EAL  +  MQ  + S  N+ T+ SVLSA   ++ L LGK I  ++   GF  +  
Sbjct: 237 SGRFEEALACFTRMQEADVS-PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQ 295

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + +AL DMY KCG I  AR++FD M D+DV+ W  MIG Y      EE   LF  +++  
Sbjct: 296 LVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLREN 355

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTR----IGYDPYSFAASALVHMYSKCGNV 311
           + PN  TF  VL ACA   A +LGK VH Y+ +     G        ++++ MY+KCG V
Sbjct: 356 VTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCV 415

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           E +++VF  M    L SW ++I+G A NG  ++AL  FE ++  G QPD I FVGVL+AC
Sbjct: 416 EVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSAC 475

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           T AG V+ G +YF S+ + +G++    HY C++DLLARSG+F EA+ ++  M M+PD  +
Sbjct: 476 TQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAI 535

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W SLL  CRIHG ++  +  AE LFE+EPEN   YV ++NIYA A
Sbjct: 536 WGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGA 580



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 143/315 (45%), Gaps = 41/315 (13%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGS--INEARQIFDKMVDR--DVVSWTAMIGR 234
           K+IH  I+++G  +     S L +      S  ++ A  +F  +  +  ++  W  +I  
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           +           LFS+++ SG+ PN+ TF  +  +CA   A    KQ+H +  ++    +
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161

Query: 295 SFAASALVHMYSKC-------------------------------GNVENSKKVFNGMPR 323
               ++L+HMYS+                                G+V++++++F+ +P 
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPA 221

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSW ++IAGY Q+G  ++AL  F  + ++   P+    V VL+AC H   ++ G ++
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELG-KW 280

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             S     G          +VD+ ++ G    A  +   M  K D  LW +++GG   + 
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDK-DVILWNTMIGG---YC 336

Query: 444 NLDLAKRAAEALFEI 458
           +L L + A   LFE+
Sbjct: 337 HLSLYEEAL-VLFEV 350


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/487 (39%), Positives = 287/487 (58%), Gaps = 36/487 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    ++++      R LE GKKVHS +   G +  V +SN LL+MYAKCG+   A+ +
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  +D+ S+N MI+   + G ++ A   F++M +RD  +W +MISGY +    + AL
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           D++  M        ++FTL+SVLSA + ++ L +G++IH +I+ TGFD   +V +AL  M
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 204 YGKCGSI---------------------------------NEARQIFDKMVDRDVVSWTA 230
           Y +CG +                                 NEA+ IFD + DRDVV+WTA
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTA 383

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G   E   LF  ++    RPN++T A +L+  +  A+   GKQ+HG   + G
Sbjct: 384 MIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 291 YDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEY 348
            + YS + S AL+ MY+K G++ ++ + F+ +    D VSWTS+I   AQ+G  ++ALE 
Sbjct: 444 -EIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE +L  G +PDHI +VGV +ACTHAGLV++G QYF  +K+   +  T  HYAC+VDL  
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G   EA++ I KMP++PD   W SLL  CR++ N+DL K AAE L  +EPEN   Y  
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSA 622

Query: 469 MANIYAS 475
           +AN+Y++
Sbjct: 623 LANLYSA 629



 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 249/525 (47%), Gaps = 77/525 (14%)

Query: 24  PSPSIYSSLIQFC--------RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           P P   S+L++ C         ++      + VH  +  SG    V++ N L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
               A+ LFDEM  R   S+NT++S + K G ++ +   FD +PQRD+ SWT MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
             Q  +A+ +   M   E    ++FTL++VL++V+A +CL  GK++H +I++ G   +  
Sbjct: 124 IGQYHKAIRIMGEMMR-EGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVS 182

Query: 196 VWSALSDMYGKCGSINEARQIFDKMV-------------------------------DRD 224
           V ++L +MY KCG    A+ +FD+MV                               +RD
Sbjct: 183 VSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           +V+W +MI  Y Q G       +FS++++ S + P+ FT A VL+ACA+     +G+Q+H
Sbjct: 243 IVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKK--------------------------- 316
            ++   G+D      +AL+ MYS+CG VE +++                           
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 317 ------VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
                 +F+ +   D+V+WT++I GY Q+G+  +A+  F  ++    +P+      +L+ 
Sbjct: 363 MNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSV 422

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
            +    +  G Q  H    K G  Y+      ++ + A++G    A      +  + D  
Sbjct: 423 ASSLASLGHGKQ-IHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTV 481

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            W S++     HG+ + A    E +  +E   P  ++T   ++++
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETML-MEGLRP-DHITYVGVFSA 524



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 81/373 (21%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S++  C     L  G+++HSH+ ++GF     + N L+ MY++CG +  A+ L
Sbjct: 277 PDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRL 336

Query: 84  FDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            ++   +D  +  +  ++ G+ K G + +A+N+FD +  RD  +WTAMI GY ++    E
Sbjct: 337 IEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGE 396

Query: 142 ALDLYRMMQNFEN---------------------------------------SVSNKF-- 160
           A++L+R M   E                                        SVSN    
Sbjct: 397 AINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALIT 456

Query: 161 ------TLSSVLSAVSAIQCLR---------LGKEIHGY----------IMRTGFDSDEV 195
                 +++S   A   I+C R         +    HG+          ++  G   D +
Sbjct: 457 MYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVV-----SWTAMIGRYFQEGRREEGFALFSE 250
            +  +       G +N+ RQ FD M D D +      +  M+  + + G  +E      E
Sbjct: 517 TYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEA----QE 572

Query: 251 LI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKC 308
            I K  I P+  T+  +L+AC  +   +LGK     +  +  +P  S A SAL ++YS C
Sbjct: 573 FIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLL--EPENSGAYSALANLYSAC 630

Query: 309 GNVENSKKVFNGM 321
           G  E + K+   M
Sbjct: 631 GKWEEAAKIRKSM 643


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/487 (39%), Positives = 287/487 (58%), Gaps = 36/487 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++++      R +E GKKVHS +   G +  V +SN LL+MYAKCG+   A+ +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  RD+ S+N MI+   + G ++ A   F++M +RD  +W +MISG+ +    + AL
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRAL 263

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           D++  M        ++FTL+SVLSA + ++ L +GK+IH +I+ TGFD   +V +AL  M
Sbjct: 264 DIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323

Query: 204 YGKCGSI---------------------------------NEARQIFDKMVDRDVVSWTA 230
           Y +CG +                                 N+A+ IF  + DRDVV+WTA
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G   E   LF  ++  G RPN++T A +L+  +  A+   GKQ+HG   + G
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443

Query: 291 YDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEY 348
            + YS + S AL+ MY+K GN+ ++ + F+ +    D VSWTS+I   AQ+G  ++ALE 
Sbjct: 444 -EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE +L  G +PDHI +VGV +ACTHAGLV++G QYF  +K+   +  T  HYAC+VDL  
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G   EA++ I KMP++PD   W SLL  CR+H N+DL K AAE L  +EPEN   Y  
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSA 622

Query: 469 MANIYAS 475
           +AN+Y++
Sbjct: 623 LANLYSA 629



 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/527 (26%), Positives = 251/527 (47%), Gaps = 81/527 (15%)

Query: 24  PSPSIYSSLIQFC--------RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           P P   S+L++ C         ++      + VH  +  SG    V++ N L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
               A+ LFDEM  R   S+NT++S ++K G ++     FD++PQRD+ SWT MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 136 YNQPIEALDLYRMMQNF--ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
             Q  +A+   R+M +   E     +FTL++VL++V+A +C+  GK++H +I++ G   +
Sbjct: 124 IGQYHKAI---RVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGN 180

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA------- 246
             V ++L +MY KCG    A+ +FD+MV RD+ SW AMI  + Q G+ +   A       
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240

Query: 247 ------------------------LFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQ 281
                                   +FS++++ S + P+ FT A VL+ACA+     +GKQ
Sbjct: 241 RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQ 300

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK------------------------- 316
           +H ++   G+D      +AL+ MYS+CG VE +++                         
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360

Query: 317 --------VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
                   +F  +   D+V+WT++I GY Q+G   +A+  F  ++  G +P+      +L
Sbjct: 361 GDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAML 420

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +  +    +  G Q  H    K G  Y+      ++ + A++G    A      +  + D
Sbjct: 421 SVASSLASLSHGKQ-IHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERD 479

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
              W S++     HG+ + A    E +  +E   P  ++T   ++++
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETML-MEGLRP-DHITYVGVFSA 524



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 156/373 (41%), Gaps = 81/373 (21%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S++  C     L  GK++HSH+ ++GF     + N L+ MY++CG +  A+ L
Sbjct: 277 PDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRL 336

Query: 84  FDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            ++   +D  +  +  ++ G+ K G + QA+N+F  +  RD  +WTAMI GY ++    E
Sbjct: 337 IEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGE 396

Query: 142 ALDLYRMM---------------------------------------QNFENSVSNKF-- 160
           A++L+R M                                       + +  SVSN    
Sbjct: 397 AINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALIT 456

Query: 161 ------TLSSVLSAVSAIQCLR---------LGKEIHGY----------IMRTGFDSDEV 195
                  ++S   A   I+C R         +    HG+          ++  G   D +
Sbjct: 457 MYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVV-----SWTAMIGRYFQEGRREEGFALFSE 250
            +  +       G +N+ RQ FD M D D +      +  M+  + + G  +E      E
Sbjct: 517 TYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEA----QE 572

Query: 251 LI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKC 308
            I K  I P+  T+  +L+AC  H   +LGK     +  +  +P  S A SAL ++YS C
Sbjct: 573 FIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLL--EPENSGAYSALANLYSAC 630

Query: 309 GNVENSKKVFNGM 321
           G  E + K+   M
Sbjct: 631 GKWEEAAKIRKSM 643


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 285/466 (61%), Gaps = 21/466 (4%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           +++  C   +A+ + K+VH +   +G  P VF+ N L+D YAKCG + +A  +F+ M+ +
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLY 146
           DV S+N M++G+++ G+ E A  LF  M +     D  +WTA+I+GY +     EAL+L+
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----------GFDSDEVV 196
           R M  F  S+ N  T+ SVLSA +++     G EIH Y ++           G D D +V
Sbjct: 390 RQMI-FSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMV 448

Query: 197 WSALSDMYGKCGSINEARQIFD--KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           ++AL DMY KC S   AR IFD   + +R+VV+WT MIG + Q G   +   LF E+I  
Sbjct: 449 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 508

Query: 255 --GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSKCGN 310
             G+ PNA+T + +L ACA  AA  +GKQ+H Y+ R      S  F A+ L+ MYSKCG+
Sbjct: 509 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGD 568

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           V+ ++ VF+ M +   +SWTS++ GY  +G   +AL+ F+ + K+G  PD I F+ VL A
Sbjct: 569 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 628

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H G+VD+GL YF S+   +GLT  A+HYAC +DLLARSGR  +A   +  MPM+P   
Sbjct: 629 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 688

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +W +LL  CR+H N++LA+ A   L E+  EN  +Y  ++NIYA+A
Sbjct: 689 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 734



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 222/505 (43%), Gaps = 90/505 (17%)

Query: 8   QRRLKEALQI----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           Q RL  A+ +    L   + P       +++ C +  +   G   H  +  +GF+  VFI
Sbjct: 133 QGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFI 192

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            N L+ MY++CG++ +A  +FDE+ +R   DV S+N+++S   K  +   A +LF +M  
Sbjct: 193 CNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT- 251

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                        + + +P              N  S+  ++ ++L A  +++ +   KE
Sbjct: 252 ------------LIVHEKP-------------TNERSDIISIVNILPACGSLKAVPQTKE 286

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +HG  +R G   D  V +AL D Y KCG +  A ++F+ M  +DVVSW AM+  Y Q G 
Sbjct: 287 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 346

Query: 241 REEGFALFS-----------------------------------ELIKSGIRPNAFTFAG 265
            E  F LF                                    ++I SG  PN  T   
Sbjct: 347 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 406

Query: 266 VLNACADHAAEELGKQVHGYMTRI----------GYDPYSFAASALVHMYSKCGNVENSK 315
           VL+ACA   A   G ++H Y  +           G D      +AL+ MYSKC + + ++
Sbjct: 407 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 466

Query: 316 KVFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTAC 371
            +F+ +P    ++V+WT +I G+AQ G  + AL+ F  ++    G  P+      +L AC
Sbjct: 467 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 526

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKF 430
            H   +  G Q    +   H    +A   A C++D+ ++ G    A  V   M  K    
Sbjct: 527 AHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SAI 585

Query: 431 LWASLLGGCRIHGNLDLAKRAAEAL 455
            W S++ G  +HG      R +EAL
Sbjct: 586 SWTSMMTGYGMHG------RGSEAL 604



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 194/437 (44%), Gaps = 62/437 (14%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSV 156
           +++ +   G+ + A  + + +       W  +I  +++  +   A+++  RM++    + 
Sbjct: 95  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR--AGTR 152

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            + FTL  VL A   +   R G   HG I   GF+S+  + +AL  MY +CGS+ EA  I
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 217 FDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELI------KSGIRPNAFTFAGVL 267
           FD++  R   DV+SW +++  + +         LFS++        +  R +  +   +L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC    A    K+VHG   R G  P  F  +AL+  Y+KCG +EN+ KVFN M   D+V
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 332

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLK--------------------------------- 354
           SW +++AGY+Q+G  + A E F+ + K                                 
Sbjct: 333 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392

Query: 355 --SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-----------YA 401
             SG+ P+ +  + VL+AC   G   +G +  H+   K+ L  T D+           Y 
Sbjct: 393 IFSGSLPNCVTIISVLSACASLGAFSQGTE-IHAYSLKNCL-LTLDNDFGGEDEDLMVYN 450

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLGGCRIHGNL-DLAKRAAEALFEIE 459
            ++D+ ++   F  A  +   +P++    + W  ++GG   +G+  D  K   E + E  
Sbjct: 451 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 510

Query: 460 PENPATYVTMANIYASA 476
              P  Y     + A A
Sbjct: 511 GVAPNAYTISCILMACA 527



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 72/118 (61%), Gaps = 16/118 (13%)

Query: 13  EALQI-LHQISHP---SPSIY--SSLIQFCRQNRALEEGKKVHSHL------KSSGFKPG 60
           +AL++ +  IS P   +P+ Y  S ++  C    A+  GK++H+++      +SS +   
Sbjct: 497 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAY--- 553

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
            F++NCL+DMY+KCG++  A+ +FD M ++   S+ +M++G+   G   +A ++FD+M
Sbjct: 554 -FVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 610



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 11/182 (6%)

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + +V  Y  CG  + +  V   +     V W  LI  + + G  D A+     +L++GT+
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEA 416
           PDH     VL AC        G   FH +   +G  + ++ + C  +V + +R G   EA
Sbjct: 153 PDHFTLPHVLKACGELPSYRCG-SAFHGLICCNG--FESNVFICNALVAMYSRCGSLEEA 209

Query: 417 EDVISKMPMK--PDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYVTMA 470
             +  ++  +   D   W S++       N    LDL  +    + E      +  +++ 
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 471 NI 472
           NI
Sbjct: 270 NI 271


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 285/466 (61%), Gaps = 21/466 (4%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           +++  C   +A+ + K+VH +   +G  P VF+ N L+D YAKCG + +A  +F+ M+ +
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLY 146
           DV S+N M++G+++ G+ E A  LF  M +     D  +WTA+I+GY +     EAL+L+
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----------GFDSDEVV 196
           R M  F  S+ N  T+ SVLSA +++     G EIH Y ++           G D D +V
Sbjct: 397 RQMI-FSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMV 455

Query: 197 WSALSDMYGKCGSINEARQIFD--KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           ++AL DMY KC S   AR IFD   + +R+VV+WT MIG + Q G   +   LF E+I  
Sbjct: 456 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 515

Query: 255 --GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSKCGN 310
             G+ PNA+T + +L ACA  AA  +GKQ+H Y+ R      S  F A+ L+ MYSKCG+
Sbjct: 516 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGD 575

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           V+ ++ VF+ M +   +SWTS++ GY  +G   +AL+ F+ + K+G  PD I F+ VL A
Sbjct: 576 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 635

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H G+VD+GL YF S+   +GLT  A+HYAC +DLLARSGR  +A   +  MPM+P   
Sbjct: 636 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 695

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +W +LL  CR+H N++LA+ A   L E+  EN  +Y  ++NIYA+A
Sbjct: 696 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 741



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 222/505 (43%), Gaps = 90/505 (17%)

Query: 8   QRRLKEALQI----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           Q RL  A+ +    L   + P       +++ C +  +   G   H  +  +GF+  VFI
Sbjct: 140 QGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFI 199

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            N L+ MY++CG++ +A  +FDE+ +R   DV S+N+++S   K  +   A +LF +M  
Sbjct: 200 CNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT- 258

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                        + + +P              N  S+  ++ ++L A  +++ +   KE
Sbjct: 259 ------------LIVHEKP-------------TNERSDIISIVNILPACGSLKAVPQTKE 293

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +HG  +R G   D  V +AL D Y KCG +  A ++F+ M  +DVVSW AM+  Y Q G 
Sbjct: 294 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 353

Query: 241 REEGFALFS-----------------------------------ELIKSGIRPNAFTFAG 265
            E  F LF                                    ++I SG  PN  T   
Sbjct: 354 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 413

Query: 266 VLNACADHAAEELGKQVHGYMTRI----------GYDPYSFAASALVHMYSKCGNVENSK 315
           VL+ACA   A   G ++H Y  +           G D      +AL+ MYSKC + + ++
Sbjct: 414 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 473

Query: 316 KVFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTAC 371
            +F+ +P    ++V+WT +I G+AQ G  + AL+ F  ++    G  P+      +L AC
Sbjct: 474 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 533

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKF 430
            H   +  G Q    +   H    +A   A C++D+ ++ G    A  V   M  K    
Sbjct: 534 AHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SAI 592

Query: 431 LWASLLGGCRIHGNLDLAKRAAEAL 455
            W S++ G  +HG      R +EAL
Sbjct: 593 SWTSMMTGYGMHG------RGSEAL 611



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 194/437 (44%), Gaps = 62/437 (14%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSV 156
           +++ +   G+ + A  + + +       W  +I  +++  +   A+++  RM++    + 
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR--AGTR 159

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            + FTL  VL A   +   R G   HG I   GF+S+  + +AL  MY +CGS+ EA  I
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 217 FDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELI------KSGIRPNAFTFAGVL 267
           FD++  R   DV+SW +++  + +         LFS++        +  R +  +   +L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC    A    K+VHG   R G  P  F  +AL+  Y+KCG +EN+ KVFN M   D+V
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 339

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLK--------------------------------- 354
           SW +++AGY+Q+G  + A E F+ + K                                 
Sbjct: 340 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399

Query: 355 --SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-----------YA 401
             SG+ P+ +  + VL+AC   G   +G +  H+   K+ L  T D+           Y 
Sbjct: 400 IFSGSLPNCVTIISVLSACASLGAFSQGTE-IHAYSLKNCL-LTLDNDFGGEDEDLMVYN 457

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLGGCRIHGNL-DLAKRAAEALFEIE 459
            ++D+ ++   F  A  +   +P++    + W  ++GG   +G+  D  K   E + E  
Sbjct: 458 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 517

Query: 460 PENPATYVTMANIYASA 476
              P  Y     + A A
Sbjct: 518 GVAPNAYTISCILMACA 534



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 72/118 (61%), Gaps = 16/118 (13%)

Query: 13  EALQI-LHQISHP---SPSIY--SSLIQFCRQNRALEEGKKVHSHL------KSSGFKPG 60
           +AL++ +  IS P   +P+ Y  S ++  C    A+  GK++H+++      +SS +   
Sbjct: 504 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAY--- 560

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
            F++NCL+DMY+KCG++  A+ +FD M ++   S+ +M++G+   G   +A ++FD+M
Sbjct: 561 -FVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 617



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 11/182 (6%)

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + +V  Y  CG  + +  V   +     V W  LI  + + G  D A+     +L++GT+
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEA 416
           PDH     VL AC        G   FH +   +G  + ++ + C  +V + +R G   EA
Sbjct: 160 PDHFTLPHVLKACGELPSYRCG-SAFHGLICCNG--FESNVFICNALVAMYSRCGSLEEA 216

Query: 417 EDVISKMPMK--PDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYVTMA 470
             +  ++  +   D   W S++       N    LDL  +    + E      +  +++ 
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 471 NI 472
           NI
Sbjct: 277 NI 278


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 186/465 (40%), Positives = 280/465 (60%), Gaps = 7/465 (1%)

Query: 18  LHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +H IS    P+   + S+ + C + R   EGK+VH+H+   G +   F+   L++MYA+ 
Sbjct: 117 VHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQN 176

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G + +A+ +FD+   RD  S+  +I+G+   G L++AR LFDE+P RD  SW AMISGY 
Sbjct: 177 GELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYA 236

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS-AIQCLRLGKEIHGYIMRTGFDSD 193
           +  +  EA+  +  M+       N  T+ SVLSA + +   L+LG  +  +I   G  S+
Sbjct: 237 QSGRVEEAMAFFEEMRR-AKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSN 295

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             + + L DMY KCG + EA  +F+K+ D++VVSW  MIG Y      +E   LF  +++
Sbjct: 296 IRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQ 355

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA--SALVHMYSKCGNV 311
           S I PN  TF  +L ACA+  A +LGK VH Y+ +      +  A  ++L+ MY+KCG++
Sbjct: 356 SNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDL 415

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
             +K++F+ M    L +W ++I+G+A +G  D AL  F  +   G  PD I FVGVLTAC
Sbjct: 416 AVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTAC 475

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
            HAGL+  G +YF S+ + + ++    HY C++DL  R+G F EAE ++  M MKPD  +
Sbjct: 476 KHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAI 535

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W SLLG CRIH  ++LA+  A+ LFE+EPENP+ YV ++NIYA A
Sbjct: 536 WCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGA 580



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 138/309 (44%), Gaps = 40/309 (12%)

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC-----GSINEARQIFDKM 220
           L+ +S  + L+  K+IH  I++TG  +      ALS +   C     G ++ A  +F  +
Sbjct: 32  LTLLSNCKTLQTLKQIHSQIIKTGLHNTHF---ALSKLIEFCAVSPHGDLSYALSLFKTI 88

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            + + V W  MI               +  +I SG  PN +TF  +  +C        GK
Sbjct: 89  RNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGK 148

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL-------- 332
           QVH ++ ++G +  +F  ++L++MY++ G + N++ VF+     D VS+T+L        
Sbjct: 149 QVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKG 208

Query: 333 -----------------------IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
                                  I+GYAQ+G  ++A+ +FE + ++   P+    + VL+
Sbjct: 209 FLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLS 268

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC  +G   +   +  S  E  GL         ++D+  + G   EA ++  K+  K + 
Sbjct: 269 ACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDK-NV 327

Query: 430 FLWASLLGG 438
             W  ++GG
Sbjct: 328 VSWNVMIGG 336


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/486 (38%), Positives = 290/486 (59%), Gaps = 34/486 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++++  C     L  G+KVHS +   G    + ++N LL+MYAK G+   A+ +
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIV 202

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M+ +   S+NTMIS   + G ++ A+  F++M +RD  SW AMISGY ++    EAL
Sbjct: 203 FDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREAL 262

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS----------- 192
           D++  M    +S  +KFTL+S LSA + ++ L+LGK+IH +I+RT FD+           
Sbjct: 263 DIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISM 322

Query: 193 ----------------------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
                                 D + ++AL D Y K G IN AR+IFD +  RDVV+WTA
Sbjct: 323 YSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTA 382

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G  ++   LF  +IK G +PN +T A +L+  +  A+ + G+Q+H   TR G
Sbjct: 383 MIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSG 442

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYF 349
                  ++AL+ MY+K G++ +++ VFN +  + D ++WTS+I   AQ+G+ ++AL  F
Sbjct: 443 NASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLF 502

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           E +L++G +PDHI +VGVL+ACTH GLV++G  Y++ ++  H +  T  HYAC++DL  R
Sbjct: 503 ERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGR 562

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G   EA   I  MP++PD   W SLL  C++H N++LA+ AAE L  IEPEN   Y  +
Sbjct: 563 AGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSAL 622

Query: 470 ANIYAS 475
           AN+Y++
Sbjct: 623 ANVYSA 628



 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 162/519 (31%), Positives = 267/519 (51%), Gaps = 74/519 (14%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           QIL   S P    Y+S +Q   + +    GK +H+ +  +G   GVF+ N L++ YAK G
Sbjct: 7   QILTSPSDP----YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTG 62

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            I DA  +FDEM  + V S+N ++SG+ KGG LE+A  +F+EMP+ D+ SWTAMI GY +
Sbjct: 63  FIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQ 122

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
             Q   A+ ++R M + ++    +FTL++VL++ +A++CL +G+++H ++++ G  S   
Sbjct: 123 MGQFENAIGMFREMVS-DDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYIS 181

Query: 196 VWSALSDMYGKCGSINEARQIFDK-------------------------------MVDRD 224
           V ++L +MY K G    A+ +FD+                               M++RD
Sbjct: 182 VANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERD 241

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSE-LIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           VVSW AMI  Y Q G   E   +FS+ L+ S  +P+ FT A  L+ACA+    +LGKQ+H
Sbjct: 242 VVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIH 301

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKK--------------------------- 316
            ++ R  +D +    +AL+ MYSK G VE ++K                           
Sbjct: 302 AHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGD 361

Query: 317 ------VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
                 +F+ +   D+V+WT++I GY QNG    A+E F  ++K G +P++     +L+ 
Sbjct: 362 INPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSV 421

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
            +    +D G Q  H+   + G   +      ++ + A+SG  ++A  V + +  K D  
Sbjct: 422 SSSLASLDHGRQ-IHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTI 480

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYV 467
            W S++     HG  + A    E + E  I+P++  TYV
Sbjct: 481 TWTSMIIALAQHGLGEEALTLFERMLENGIKPDH-ITYV 518



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 167/387 (43%), Gaps = 80/387 (20%)

Query: 12  KEALQILHQI-----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +EAL I  ++     S P     +S +  C     L+ GK++H+H+  + F     + N 
Sbjct: 259 REALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNA 318

Query: 67  LLDMYAKCGNISDAQTLFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           L+ MY+K G +  AQ + ++  +   DV ++  ++ G+ K G +  AR +FD +  RD  
Sbjct: 319 LISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVV 378

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTAMI GYV+     +A++L+R M   E    N +TL+++LS  S++  L  G++IH  
Sbjct: 379 AWTAMIVGYVQNGFNQDAMELFRSMIK-EGPKPNNYTLATMLSVSSSLASLDHGRQIHAS 437

Query: 185 IMRTG--------------------------------FDSDEVVWSALSDMYGKCGSINE 212
             R+G                                +  D + W+++     + G   E
Sbjct: 438 ATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEE 497

Query: 213 ARQIFDKMVDR----DVVSWTAMIGRYFQEGRREEG-------------------FALFS 249
           A  +F++M++     D +++  ++      G  E+G                   +A   
Sbjct: 498 ALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMI 557

Query: 250 ELI-KSG-------------IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY- 294
           +L  ++G             I P+   +  +L +C  H   EL +     +  I  +P  
Sbjct: 558 DLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLI--EPEN 615

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGM 321
           S A SAL ++YS CG  EN+  +   M
Sbjct: 616 SGAYSALANVYSACGQWENAANIRKSM 642


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/487 (37%), Positives = 282/487 (57%), Gaps = 36/487 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    S+++  C  N+ L+ G+K+HS +   G    V ++  LL+MYAKCG+   A+ +
Sbjct: 140 PSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVV 199

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  +++ ++N +IS + + G  E A + F++MP RD  SW +MISGY +    +EAL
Sbjct: 200 FDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEAL 259

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  M N  +   + FTL+S+LSA + ++ L +GK+IH YI+R   ++   V +AL  M
Sbjct: 260 AIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISM 319

Query: 204 YGKCG---------------------------------SINEARQIFDKMVDRDVVSWTA 230
           Y K G                                 ++  AR+IF+K+ DRDVV+WTA
Sbjct: 320 YAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTA 379

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G   +   LF  ++  G  PN++T A +L+  +     E GKQ+H    + G
Sbjct: 380 MIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG 439

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEY 348
                   +AL+ MY+K GN+  +K+VF+ +P  + ++VSWTS+I   AQ+G+  +A+  
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINL 498

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE +L  G +PDHI +VGVL+ACTH GLV++G +Y++ + E H +  T  HYAC++DL  
Sbjct: 499 FERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYG 558

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G   EA   I  MP++PD   W SLL  C+IH N DLAK AAE L  I+P N   Y+ 
Sbjct: 559 RAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLA 618

Query: 469 MANIYAS 475
           +AN+Y++
Sbjct: 619 LANVYSA 625



 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 249/501 (49%), Gaps = 71/501 (14%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           S  S   ++ ++Q   + +    G+ VH  +   G   GV++ N L+  YAK G++  A 
Sbjct: 6   SPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAH 65

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +FDEM  +   S+NT+ISG+ K G+ E +R L  EMP  D  SWTA+I GY ++     
Sbjct: 66  HVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDN 125

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+ ++  M + E    ++FT+S+VLS+ +A Q L +G++IH ++++ G  S   V ++L 
Sbjct: 126 AIWMFAKMIS-ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 202 DMYGKCGSINEARQIFD-------------------------------KMVDRDVVSWTA 230
           +MY KCG    A+ +FD                               KM DRD+VSW +
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 231 MIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           MI  Y Q+G   E  A+FS+++ +  ++P+ FT A +L+ACA+     +GKQ+H Y+ R 
Sbjct: 245 MISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 290 GYDPYSFAASALVHM---------------------------------YSKCGNVENSKK 316
             +      +AL+ M                                 Y+K GNV+ +++
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +FN +   D+V+WT++I GY QNG+ + ALE F L++  G +P+      +L+  +   +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ G Q  H+   K G + T      ++ + A++G  + A+ V      K +   W S++
Sbjct: 425 LEHGKQ-IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMI 483

Query: 437 GGCRIHGNLDLAKRAAEALFE 457
                HG   L K A   LFE
Sbjct: 484 MALAQHG---LGKEAIN-LFE 500



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 161/363 (44%), Gaps = 55/363 (15%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           IL   +  S ++ ++LI    ++  +E  + +  H ++S      F S  LLD Y K GN
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTS--LLDGYTKLGN 358

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGG----SLEQARNLFDEMPQRDNFSWTAMIS- 131
           +  A+ +F+++++RDV ++  MI G+ + G    +LE  R + +E P+ ++++  AM+S 
Sbjct: 359 VKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSV 418

Query: 132 ----GYVRYNQPIEA-----------------LDLYRMMQNFENSVSNKFTLSS----VL 166
                 + + + I A                 + +Y    N  N     F L +    ++
Sbjct: 419 SSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI-NVAKRVFDLPNGKKEIV 477

Query: 167 SAVSAIQCLR---LGKE---IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           S  S I  L    LGKE   +   ++  G   D + +  +       G + + R+ ++ M
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537

Query: 221 -----VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
                ++  +  +  MI  Y + G  +E + LF E +   I P+   +  +L +C  H  
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQEAY-LFIESMP--IEPDNIAWGSLLASCKIHKN 594

Query: 276 EELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVEN---SKKVFN--GMPRPDLVSW 329
            +L K     +  I  DP  S A  AL ++YS CG  EN   ++K+    G+ +   +SW
Sbjct: 595 ADLAKVAAERLLLI--DPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISW 652

Query: 330 TSL 332
             +
Sbjct: 653 IHI 655


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 294/489 (60%), Gaps = 36/489 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   YSSLI  C   R L+ GK +HSH   +      F++N L+D Y+KC +I  A  +
Sbjct: 12  PAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKV 71

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  +  ++  S+N +IS +++ G   +A NL D+MP+ +  S+ ++ISG   +    E+L
Sbjct: 72  FHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESL 131

Query: 144 DLYR-MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           ++++ M++   N + ++FTL S++ + +++    L +++HG  +  G +S+ ++ +AL D
Sbjct: 132 NVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALID 191

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ------------------------- 237
            YGKCG  + +  IF +M +RDVVSWT+M+  Y Q                         
Sbjct: 192 AYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTAL 251

Query: 238 ------EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR--- 288
                  GR +E   LF ++ + GI P+AFTFA VL+ACAD A    GK++HG++ R   
Sbjct: 252 IAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTC 311

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
           I Y    F  +AL+ MY KCG + ++  +F GM   D+VSW SLI G+AQNG  +++L  
Sbjct: 312 IDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAV 371

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE ++++  +P+H+ F+G+L+AC H GLV +GL+   S+++ +G+   +DHYA ++DLL 
Sbjct: 372 FERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLG 431

Query: 409 RSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467
           R+ R  EA  +I + P   D   +W +LLG CRIHGN+DLA+RAAE LF++EP N A YV
Sbjct: 432 RNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYV 491

Query: 468 TMANIYASA 476
            + NIYA+A
Sbjct: 492 MVYNIYAAA 500



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 35/218 (16%)

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           S + P    ++ +++ C      +LGK +H +  +      +F A+ L+  YSKC ++++
Sbjct: 8   SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQS 67

Query: 314 SKKVF-------------------------------NGMPRPDLVSWTSLIAGYAQNGMP 342
           + KVF                               + MP+P+LVS+ SLI+G   +G  
Sbjct: 68  AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFR 127

Query: 343 DKALEYFELLLK--SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
            ++L  F+ +LK  S    D    V ++ +C   G   + L+  H      GL       
Sbjct: 128 KESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLG-APELLRQVHGAAIIIGLNSNIIIG 186

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             ++D   + G    +  + S+MP + D   W S++  
Sbjct: 187 NALIDAYGKCGEPDISFSIFSRMPER-DVVSWTSMVAA 223


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 280/455 (61%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A +EG+++H H+   G    +++   L+ MY + G + DA  +
Sbjct: 89  PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 148

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FDE   RDV SY  +I G+   G +E A+ +FDE+P +D  SW AMISGY       EAL
Sbjct: 149 FDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEAL 208

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +V+SA +    + LG+++H +I   GF S+  + +AL D+
Sbjct: 209 ELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDL 267

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ +  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 268 YSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 327

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E + +VFN +
Sbjct: 328 LSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI 387

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  D + + F  + K+G +PD I FVG+L+AC+H+G++D G 
Sbjct: 388 LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 447

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+ + + +T   +HY C++DLL  SG F EAE++I+ M M+PD  +W SLL  C++
Sbjct: 448 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 507

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L +  A+ L +IEPENP +YV ++NIYA+A
Sbjct: 508 HGNVELGESFAQNLIKIEPENPGSYVLLSNIYATA 542



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 158/336 (47%), Gaps = 46/336 (13%)

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSD---MYGKCGSINEARQIFDKMVDRDVVSW 228
           +Q LR+   IH  +++TG  +     S L +   +      +  A  +F+ + + +++ W
Sbjct: 3   LQSLRM---IHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIW 59

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
             M   +           L+  +I  G+ PN++TF  +L +CA   A + G+Q+HG++ +
Sbjct: 60  NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLK 119

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG-------- 340
           +G D   +  ++L+ MY + G +E++ KVF+  P  D+VS+T+LI GYA  G        
Sbjct: 120 LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKM 179

Query: 341 ---MPDK--------------------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
              +P K                    ALE F+ ++K+  +PD    V V++AC  +G +
Sbjct: 180 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 239

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           + G Q  HS  + HG          ++DL ++ G    A  +   +P K D   W +L+G
Sbjct: 240 ELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK-DVISWNTLIG 297

Query: 438 GCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
           G   + +++L K A     E L   E  N  T +++
Sbjct: 298 G---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 330



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 88/198 (44%), Gaps = 8/198 (4%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVH---MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           + +H  M + G    ++A S L+    +      +  +  VF  +  P+L+ W ++  G+
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           A +  P  AL+ +  ++  G  P+   F  +L +C  +    +G Q  H    K G    
Sbjct: 67  ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEG-QQIHGHVLKLGCDLD 125

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
              +  ++ +  ++GR  +A  V  + P + D   + +L+ G    G ++ A++  +   
Sbjct: 126 LYVHTSLISMYVQNGRLEDAHKVFDESPHR-DVVSYTALIKGYASRGYIENAQKMFD--- 181

Query: 457 EIEPENPATYVTMANIYA 474
           EI  ++  ++  M + YA
Sbjct: 182 EIPVKDVVSWNAMISGYA 199


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 184/487 (37%), Positives = 282/487 (57%), Gaps = 36/487 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    S+++  C  N+ L+ G+K+HS +   G    V ++  LL+MYAKCG+   A+ +
Sbjct: 140 PSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVV 199

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  +++ ++N +IS + + G  E A + F++MP RD  SW +MISGY +    +EAL
Sbjct: 200 FDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEAL 259

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  M N  +   + FTL+S+LSA + ++ L +GK+IH YI+R   ++   V +AL  M
Sbjct: 260 VIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISM 319

Query: 204 YGKCG---------------------------------SINEARQIFDKMVDRDVVSWTA 230
           Y K G                                 ++  AR+IF+K+ DRDVV+WTA
Sbjct: 320 YAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTA 379

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G   +   LF  ++  G  PN++T A +L+  +     E GKQ+H    + G
Sbjct: 380 MIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG 439

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEY 348
                   +AL+ MY+K GN+  +K+VF+ +P  + ++VSWTS+I   AQ+G+  +A+  
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINL 498

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE +L  G +PDHI +VGVL+ACTH GLV++G +Y++ + E H +  T  HYAC++DL  
Sbjct: 499 FERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYG 558

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G   EA   I  MP++PD   W SLL  C+IH N DLAK AAE L  I+P N   Y+ 
Sbjct: 559 RAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLA 618

Query: 469 MANIYAS 475
           +AN+Y++
Sbjct: 619 LANVYSA 625



 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 248/501 (49%), Gaps = 71/501 (14%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           S  S   ++ ++Q   + +    G+ VH  +   G   GV++ N L+  YAK G++  A 
Sbjct: 6   SPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAH 65

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +FDEM  +   S+NT+ISG+ K G+ E +R L  EMP  D  SWTA+I GY ++     
Sbjct: 66  HVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDN 125

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+ ++  M + E    ++FT+S+VLS+ +A Q L +G++IH ++++ G  S   V ++L 
Sbjct: 126 AIWMFAKMIS-ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 202 DMYGKCGSINEARQIFD-------------------------------KMVDRDVVSWTA 230
           +MY KCG    A+ +FD                               KM DRD+VSW +
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 231 MIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           MI  Y Q+G   E   +FS+++ +  ++P+ FT A +L+ACA+     +GKQ+H Y+ R 
Sbjct: 245 MISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 290 GYDPYSFAASALVHM---------------------------------YSKCGNVENSKK 316
             +      +AL+ M                                 Y+K GNV+ +++
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +FN +   D+V+WT++I GY QNG+ + ALE F L++  G +P+      +L+  +   +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ G Q  H+   K G + T      ++ + A++G  + A+ V      K +   W S++
Sbjct: 425 LEHGKQ-IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMI 483

Query: 437 GGCRIHGNLDLAKRAAEALFE 457
                HG   L K A   LFE
Sbjct: 484 MALAQHG---LGKEAIN-LFE 500



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 161/363 (44%), Gaps = 55/363 (15%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           IL   +  S ++ ++LI    ++  +E  + +  H ++S      F S  LLD Y K GN
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTS--LLDGYTKLGN 358

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGG----SLEQARNLFDEMPQRDNFSWTAMIS- 131
           +  A+ +F+++++RDV ++  MI G+ + G    +LE  R + +E P+ ++++  AM+S 
Sbjct: 359 VKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSV 418

Query: 132 ----GYVRYNQPIEA-----------------LDLYRMMQNFENSVSNKFTLSS----VL 166
                 + + + I A                 + +Y    N  N     F L +    ++
Sbjct: 419 SSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI-NVAKRVFDLPNGKKEIV 477

Query: 167 SAVSAIQCLR---LGKE---IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           S  S I  L    LGKE   +   ++  G   D + +  +       G + + R+ ++ M
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537

Query: 221 -----VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
                ++  +  +  MI  Y + G  +E + LF E +   I P+   +  +L +C  H  
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQEAY-LFIESMP--IEPDNIAWGSLLASCKIHKN 594

Query: 276 EELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVEN---SKKVFN--GMPRPDLVSW 329
            +L K     +  I  DP  S A  AL ++YS CG  EN   ++K+    G+ +   +SW
Sbjct: 595 ADLAKVAAERLLLI--DPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISW 652

Query: 330 TSL 332
             +
Sbjct: 653 IHI 655


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 279/455 (61%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C + +A +EG ++H H+   G++  +++   L+ MY +   + DA  +
Sbjct: 61  PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  +++G+   G +E ARN+FDE+P +D  SW AMISGYV      EAL
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +V+SA +    + LG+++H +I   GF S+  + +AL D 
Sbjct: 181 ELFKEMMK-TNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDF 239

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F  +  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 240 YSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTM 299

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L+ACA   A ++G+ +H Y+ +   G    S   ++L+ MYSKCG++E + +VFN M
Sbjct: 300 LSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM 359

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L +W ++I G+A +G  + A + F  + K+  +PD I FVG+L+AC+HAG++D G 
Sbjct: 360 LHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGR 419

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+   + +T   +HY C++DLL  SG F EAE++IS M M+PD  +W SLL  C++
Sbjct: 420 HIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKM 479

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L ++ A+ LF+IEP NP +YV ++NIYA+A
Sbjct: 480 HGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATA 514



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 186/402 (46%), Gaps = 67/402 (16%)

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A ++F+ +QE ++  +NT                               M  G+     P
Sbjct: 16  AISVFETIQEPNLLIWNT-------------------------------MFRGHALSPDP 44

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD-------- 191
           + AL LY  M +    + N +T   +L + + ++  + G +IHG++++ G++        
Sbjct: 45  VSALKLYVCMISL-GLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTS 103

Query: 192 -----------------------SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
                                   D V ++AL   Y   G I  AR +FD++  +DVVSW
Sbjct: 104 LISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSW 163

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
            AMI  Y + G  +E   LF E++K+ +RP+  T   V++A A   + ELG+QVH ++  
Sbjct: 164 NAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIAD 223

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G+       +AL+  YSKCG +E +  +F G+   D++SW  LI GY    +  +AL  
Sbjct: 224 HGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLL 283

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH--GLTYTADHYACIVDL 406
           F+ +L+SG  P+ +  + +L AC H G +D G ++ H   +K   G+T  +     ++D+
Sbjct: 284 FQEMLRSGESPNDVTMLSILHACAHLGAIDIG-RWIHVYIDKRLKGVTNASSLRTSLIDM 342

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            ++ G    A  V + M  K     W +++ G  +HG  + A
Sbjct: 343 YSKCGDIEAAHQVFNSMLHKSLP-AWNAMIFGFAMHGRANAA 383


>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 186/483 (38%), Positives = 291/483 (60%), Gaps = 38/483 (7%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYS----SLIQFCRQNRALEEGKKVHSHLKSSG 56
           AI  LC + +L EA+  L  ++     + S    SL+Q C  +RAL EGK+VH HLK +G
Sbjct: 30  AIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTG 89

Query: 57  FK-PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
            K PG F+SN L++MYAKCG   +A+ +FD+M  R++ S+N M+SG+ K G ++ AR LF
Sbjct: 90  LKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLF 149

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
           D+MP++D  SW  M+  + +     EAL  Y   +       N F+ + VL+    ++ +
Sbjct: 150 DKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQL-GIQCNGFSFAGVLTVCVKLKEV 208

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV---------- 225
            L +++HG I+  GF S+ V+ S++ D Y KCG + +AR++FD+M  RDV          
Sbjct: 209 GLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268

Query: 226 ---------------------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
                                VSWTA+I  Y + G   +   LF++++   +RP+ FTF+
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFS 328

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PR 323
             L ACA  A+ + GKQ+H Y+ RI + P +   SAL+ MYSKCG++   +KVF+ M  +
Sbjct: 329 SCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNK 388

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V W ++I+  AQ+G  ++A++  + +++SG +PD I FV +L AC+H+GLV +GL +
Sbjct: 389 LDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNF 448

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+   +G+  + +HYAC++DLL R+G F E  D + KMP KPD  +W +LLG CRIHG
Sbjct: 449 FESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHG 508

Query: 444 NLD 446
           +++
Sbjct: 509 HIE 511


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 282/455 (61%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A  EG+++H H+   G+   +++   L+ MY + G + DA+ +
Sbjct: 86  PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV 145

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+   RDV SY  +I+G+   G +  A+ +FDE+P +D  SW AMISGY       EAL
Sbjct: 146 FDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEAL 205

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ SV+SA +    + LG+++H +I   GF S+  + +AL D+
Sbjct: 206 ELFKEMMK-TNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 264

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ +  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 265 YIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTM 324

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A E+G+ +H Y+ +   G    S   ++L+ MY+KCG++E +++VF+ +
Sbjct: 325 LSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI 384

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  + A + F  + K+  +PD I FVG+L+AC+H+G++D G 
Sbjct: 385 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 444

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+KE + +T   +HY C++DLL  SG F EAE++I+ M M+PD  +W SLL  C++
Sbjct: 445 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 504

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L +  A+ L +IEP+NP +YV ++NIYA+A
Sbjct: 505 HGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATA 539



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 166/351 (47%), Gaps = 40/351 (11%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL++  ++      P  S   S++  C Q+ ++E G++VHS +   GF   + I N L
Sbjct: 202 KEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNAL 261

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +D+Y KCG +  A  LF+ +  +DV S+NT+I G+T     ++A  LF EM +       
Sbjct: 262 IDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR------- 314

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         N  T+ S+L A + +  + +G+ IH YI +
Sbjct: 315 -------------------------SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK 349

Query: 188 --TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              G  +     ++L DMY KCG I  A+Q+FD +++R + SW AMI  +   GR    F
Sbjct: 350 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 409

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHM 304
            +FS + K+ I P+  TF G+L+AC+     +LG+ +   M       P       ++ +
Sbjct: 410 DIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL 469

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
               G  + ++++ N M   PD V W SL+     +G  +    Y + L+K
Sbjct: 470 LGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIK 520



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 151/329 (45%), Gaps = 43/329 (13%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSD---MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           + IH  +++TG  +     S L +   +      +  A  +F+ + + +++ W  M   +
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                      L+  +I  G+ PN +TF  +L +CA   A   G+Q+HG++ ++GYD   
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 296 FAASALVHMYSKCGNVENSKKVFNG-------------------------------MPRP 324
           +  ++L+ MY + G +E+++KVF+                                +P  
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+VSW ++I+GYA+ G   +ALE F+ ++K+  +PD    V V++AC  +  ++ G Q  
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ-V 242

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           HS  + HG          ++DL  + G    A  +   +  K D   W +L+GG   + +
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIGG---YTH 298

Query: 445 LDLAKRA----AEALFEIEPENPATYVTM 469
           ++L K A     E L   E  N  T +++
Sbjct: 299 MNLYKEALLLFQEMLRSGESPNDVTMLSI 327



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 14/201 (6%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVH---MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           + +H  M + G    ++A S L+    +      +  +  VF  +  P+L+ W ++  G+
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTY 395
           A +  P  AL  +  ++  G  P+   F  +L +C  +    +G Q + H +K    L Y
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLK----LGY 119

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
             D Y    ++ +  ++GR  +A  V  +   + D   + +L+ G    G +  A++  +
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTALITGYASKGYIASAQKMFD 178

Query: 454 ALFEIEPENPATYVTMANIYA 474
              EI  ++  ++  M + YA
Sbjct: 179 ---EIPIKDVVSWNAMISGYA 196


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 184/486 (37%), Positives = 283/486 (58%), Gaps = 34/486 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++++  C    A   G+KVHS +   G    V ++N +L+MY KCG+   A+ +
Sbjct: 160 PTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAV 219

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M ER V S+N M+S     G ++ A +LF+ MP R   SW A+I+GY +     +AL
Sbjct: 220 FERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKAL 279

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             +  M ++     ++FT++SVLSA + +  + +GK++H YI+R+       V +AL  M
Sbjct: 280 WFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISM 339

Query: 204 YGKCGSI---------------------------------NEARQIFDKMVDRDVVSWTA 230
           Y K GS+                                   AR++FD M +RDVV+WTA
Sbjct: 340 YAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTA 399

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G  +E   LF  +I+SG  PN++T A VL+ CA  A  E GKQ+H    R  
Sbjct: 400 MIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSL 459

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYF 349
            +  S  ++++V MY++ G++  +++VF+ +  R + V+WTS+I   AQ+G+ + A+  F
Sbjct: 460 QEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLF 519

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           E +L+ G +PD I FVGVL+ACTH G VD+G +YF  +++KHG+     HYAC+VDLLAR
Sbjct: 520 EEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLAR 579

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G F EA++ I +MP++PD   W SLL  CR+H N DLA+ AAE L  I+P N   Y  +
Sbjct: 580 AGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSAL 639

Query: 470 ANIYAS 475
           +N+Y++
Sbjct: 640 SNVYSA 645



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/488 (28%), Positives = 230/488 (47%), Gaps = 82/488 (16%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN-----ISDAQTLFDE 86
           L+Q C+       G+ +H+    +G     ++ N LL  YA           +A+ LFDE
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 87  M--QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           +   +R+V ++N+++S + K G L  AR +F EMP+RD  SWT M+ G  R  +  EA+ 
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           ++  M   +     +FTL++VLS+ +A +   +G+++H ++++ G  S   V +++ +MY
Sbjct: 149 MFLDMVT-DGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMY 207

Query: 205 GKCGSINEARQIFDK-------------------------------MVDRDVVSWTAMIG 233
           GKCG    AR +F++                               M DR +VSW A+I 
Sbjct: 208 GKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIA 267

Query: 234 RYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
            Y Q G   +    FS ++  S + P+ FT   VL+ACA+     +GKQVH Y+ R    
Sbjct: 268 GYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMP 327

Query: 293 PYSFAASALVHMYSKCGNVENSKKV---------------------------------FN 319
                 +AL+ MY+K G+VEN++ V                                 F+
Sbjct: 328 YIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFD 387

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D+V+WT++I GY QNG  D+A+E F L+++SG +P+      VL+ C     ++ 
Sbjct: 388 VMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEY 447

Query: 380 GLQY----FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           G Q       S++E+      +     IV + ARSG    A  V  ++  + +   W S+
Sbjct: 448 GKQIHCKAIRSLQEQSSSVSNS-----IVTMYARSGSLPWARRVFDRVHWRKETVTWTSM 502

Query: 436 LGGCRIHG 443
           +     HG
Sbjct: 503 IVALAQHG 510



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 171/367 (46%), Gaps = 75/367 (20%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S++  C     +  GK+VH+++  S       ++N L+ MYAK G++ +A+ +
Sbjct: 293 PDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGV 352

Query: 84  FDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
             +  M + +V S+  ++ G+ K G ++ AR +FD M  RD  +WTAMI GY +     E
Sbjct: 353 MQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDE 412

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A++L+R+M        N +T+++VLS  +++ CL  GK+IH   +R+  +    V +++ 
Sbjct: 413 AMELFRLMIR-SGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIV 471

Query: 202 DMYGKCGSINEARQIFDKMVDR-DVVSWTAMI---------------------------- 232
            MY + GS+  AR++FD++  R + V+WT+MI                            
Sbjct: 472 TMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDR 531

Query: 233 -------------------GRYFQEGRREEGF-----------------ALFSE----LI 252
                               RYFQ+ + + G                   LFSE    + 
Sbjct: 532 ITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQ 591

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNV 311
           +  + P+A  +  +L+AC  H   +L +     +  I  DP  S A SAL ++YS CG  
Sbjct: 592 QMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSI--DPGNSGAYSALSNVYSACGRW 649

Query: 312 ENSKKVF 318
            ++ K++
Sbjct: 650 NDAAKIW 656


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 275/455 (60%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++   EG+++H  +   GF   +++   L+ MY +   + DA  +
Sbjct: 62  PNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKV 121

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  +I+G+   G +  A+ LFDE+P +D  SW AMISGY       EAL
Sbjct: 122 FDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEAL 181

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M    N   ++ T  +VLSA +    + LG+++H ++   GFDS+  + +AL D+
Sbjct: 182 ELFEEMMKM-NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDL 240

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F  +  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 241 YSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 300

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             VL ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E + +VFN M
Sbjct: 301 LSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 360

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  D + + F  + K G +PD I FVG+L+AC+H+G++D G 
Sbjct: 361 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR 420

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+ + + +T   +HY C++DLL  SG F EAE++I+ M M+PD  +W SLL  C++
Sbjct: 421 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 480

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++LA+  A+ L +IEPENP++Y+ ++NIYASA
Sbjct: 481 HGNVELAESFAQNLIKIEPENPSSYILLSNIYASA 515



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 40/351 (11%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL++  ++      P  S Y +++  C  + ++E G++VHS +   GF   + I N L
Sbjct: 178 KEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNAL 237

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +D+Y+KCG +  A  LF  +  +DV S+NT+I G+T     ++A  LF EM +       
Sbjct: 238 IDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR------- 290

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         N  T+ SVL A + +  + +G+ IH YI +
Sbjct: 291 -------------------------SGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDK 325

Query: 188 --TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              G  +   + ++L DMY KCG I  A Q+F+ M+ + + SW AMI  +   GR +  F
Sbjct: 326 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASF 385

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHM 304
            LFS + K GI P+  TF G+L+AC+     +LG+ +   MT+     P       ++ +
Sbjct: 386 DLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDL 445

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
               G  + ++++ N M   PD V W SL+     +G  + A  + + L+K
Sbjct: 446 LGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIK 496



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 40/292 (13%)

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A  +F+ + + + + W  MI  +           L+  ++  G+ PN++TF  +L +CA 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
                 G+Q+HG + ++G+D   +  ++L+ MY +   +E++ KVF+     D+VS+T+L
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 333 IAGYAQNG-----------MPDK--------------------ALEYFELLLKSGTQPDH 361
           I GYA  G           +P K                    ALE FE ++K   +PD 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
             +V VL+AC H+G ++ G Q  HS  + HG          ++DL ++ G    A  +  
Sbjct: 197 STYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
            +  K D   W +L+GG   + +++L K A     E L   E  N  T +++
Sbjct: 256 GLSYK-DVISWNTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSV 303


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 284/458 (62%), Gaps = 6/458 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++  +EG+++H H+   GF   +++   L+ MYA+ G + DAQ +
Sbjct: 73  PNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKV 132

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  +I+G+   G +E A+ +FDE+P +D  SW AMISGY       +AL
Sbjct: 133 FDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKAL 192

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+++V+SA +    + LG+++H +I   GF S+  + +AL D+
Sbjct: 193 ELFKEMMK-TNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDL 251

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A ++ + + ++DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 252 YSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 311

Query: 264 AGVLNACADHAAEELGKQVHGYMTR----IGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             +L ACA   A ++G+ +H Y+ +    +     S   ++L+ MY+KCG+++ + +V +
Sbjct: 312 LSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSD 371

Query: 320 GMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
                  L +W ++I G+A +G  + A + F  + K+G +PD I FVG+L+AC+H+G++D
Sbjct: 372 SSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLD 431

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            G   F S+++ + +T   +HY C++DLL  SG F EAE++I+ MPM+PD  +W SLL  
Sbjct: 432 LGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKA 491

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C+IHGNL+L +  A+ L +IEPENP +YV ++NIYA+A
Sbjct: 492 CKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATA 529



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 40/292 (13%)

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A  +F+ + + + + W  M   +           L+  +I  G+ PN FTF  +L +CA 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
               + G+Q+HG++ ++G+D   +  ++L+ MY++ G +E+++KVF+     D+VS+T+L
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 333 IAGYAQNG-----------MP--------------------DKALEYFELLLKSGTQPDH 361
           I GYA  G           +P                     KALE F+ ++K+  +PD 
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
                V++AC  +G ++ G Q  HS    HG          ++DL ++ G    A +++ 
Sbjct: 208 STMATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
            +  K D   W +L+GG   + +++L K A     E L   E  N  T +++
Sbjct: 267 GLSNK-DVISWNTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 314


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 281/457 (61%), Gaps = 4/457 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  L++ C +++  +EG+++H H+   GF   +++   L+ MYA+ G + DA+ +
Sbjct: 87  PDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKV 146

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  +I+G+   G +E A+ LFDE+P +D  SW AMISGYV      EAL
Sbjct: 147 FDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEAL 206

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +V+SA +    + LG+ +H +I   GF S+  + +AL D+
Sbjct: 207 ELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDL 266

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G +  A ++FD + ++DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 267 YSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 326

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS---ALVHMYSKCGNVENSKKVFN- 319
             +L ACA   A ++G+ +H Y+ +      +  +S   +L+ MY+KCG+++ +++VF+ 
Sbjct: 327 LSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDS 386

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M    L +W ++I+G+A +G  + A + F  +  +G +PD I FVG+L+AC+H+G++D 
Sbjct: 387 SMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDL 446

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G   F S+   + +T   +HY C++DLL  SG F EAE++I+ MPM+PD  +W SLL  C
Sbjct: 447 GRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKAC 506

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +IHGNL+L +  A+ L +IEP N  +YV ++NIYA+A
Sbjct: 507 KIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAA 543



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 206/454 (45%), Gaps = 104/454 (22%)

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A ++FD +QE ++  +NT                               M  G+   + P
Sbjct: 42  AISVFDTIQEPNLLIWNT-------------------------------MFRGHALSSDP 70

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           + AL LY +M +    + + +T   +L + +  +  + G++IHG++++ GFD D  V ++
Sbjct: 71  VSALKLYLVMISL-GLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTS 129

Query: 200 LSDMYGKCGSINEARQIFD---------------------------KMVD----RDVVSW 228
           L  MY + G + +AR++FD                           K+ D    +DVVSW
Sbjct: 130 LISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSW 189

Query: 229 TAMIGRYFQEGRREEGFALFSE-LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
            AMI  Y + G  +E   LF E ++ + +RP+  T   V++ACA   + ELG+ VH ++ 
Sbjct: 190 NAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWIN 249

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
             G+       +AL+ +YSK G VE + ++F+G+   D++SW +LI GY    +  +AL 
Sbjct: 250 DHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALL 309

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG--LQYFHSIKEKHGLTYTADHYACIVD 405
            F+ +L+SG  P+ +  + +L AC H G +D G  +  + + K K  +T  +     ++D
Sbjct: 310 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLID 369

Query: 406 LLARS--------------------------------GRFHEAEDVISKMPM---KPDKF 430
           + A+                                 GR + A D+ S+M M   +PD  
Sbjct: 370 MYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDI 429

Query: 431 LWASLLGGCRIHGNLDLAK---RAAEALFEIEPE 461
            +  LL  C   G LDL +   R+    +EI P+
Sbjct: 430 TFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPK 463



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 154/333 (46%), Gaps = 50/333 (15%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKC------GSINEARQIFDKMVDRDVVSWTAMI 232
           + IH  +++TG  +      ALS +   C           A  +FD + + +++ W  M 
Sbjct: 5   RXIHAQMIKTGLHNTNY---ALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             +           L+  +I  G+ P+++TF  +L +CA     + G+Q+HG++ ++G+D
Sbjct: 62  RGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFD 121

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG-----------M 341
              +  ++L+ MY++ G +E+++KVF+     D+VS+T+LIAGY   G           +
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181

Query: 342 PDK--------------------ALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           P K                    ALE F E+++ +  +PD    V V++AC  +  ++ G
Sbjct: 182 PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG 241

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            ++ HS    HG          ++DL ++ G    A ++   +  K D   W +L+GG  
Sbjct: 242 -RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNK-DVISWNTLIGG-- 297

Query: 441 IHGNLDLAKRA----AEALFEIEPENPATYVTM 469
            + +++L K A     E L   E  N  T +++
Sbjct: 298 -YTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 329


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 292/504 (57%), Gaps = 38/504 (7%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EA++ L  ++     P+    ++++  C   +A   G+KVHS +   G    V ++N
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            +L+MY KCG+   A T+F+ M  R V S+N M+S  T  G ++ A +LF+ MP R   S
Sbjct: 204 SVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVS 263

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI+GY +     +AL L+  M +  +   ++FT++SVLSA + +  +R+GK++H YI
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK-------------------------- 219
           +RT    +  V +AL   Y K GS+  AR+I D+                          
Sbjct: 324 LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMES 383

Query: 220 -------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
                  M +RDVV+WTAMI  Y Q GR +E   LF  +I  G  PN++T A VL+ CA 
Sbjct: 384 AREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 443

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTS 331
            A  + GKQ+H    R   +  S  ++A++ MY++ G+   ++++F+ +  R + ++WTS
Sbjct: 444 LACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTS 503

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I   AQ+G  ++A+  FE +L++G +PD I +VGVL+AC+HAG V++G +Y+  IK +H
Sbjct: 504 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH 563

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            +     HYAC+VDLLAR+G F EA++ I +MP++PD   W SLL  CR+H N +LA+ A
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           AE L  I+P N   Y  +AN+Y++
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSA 647



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/512 (28%), Positives = 241/512 (47%), Gaps = 76/512 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK----CGNISDAQTLF 84
           Y+ L+Q C+       G+ +H+    +G     ++ N LL  Y +     G + DA+ LF
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 85  DE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           DE  +  R+V ++N+++S F K G L  AR +F EMP+RD  SWT M+ G  R  +  EA
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +     M   +     +FTL++VLS+ +  Q   +G+++H ++++ G  S   V +++ +
Sbjct: 149 IKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 203 MYGKCG------------------------SINE-------ARQIFDKMVDRDVVSWTAM 231
           MYGKCG                        S+N        A  +F+ M DR +VSW AM
Sbjct: 208 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 267

Query: 232 IGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           I  Y Q G   +   LFS ++ +S + P+ FT   VL+ACA+     +GKQVH Y+ R  
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKV--------------------------------- 317
               S   +AL+  Y+K G+VEN++++                                 
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F  M   D+V+WT++I GY QNG  D+A++ F  ++  G +P+      VL+ C     +
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           D G Q  H    +  L  ++     I+ + ARSG F  A  +  ++  + +   W S++ 
Sbjct: 448 DYGKQ-IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 438 GCRIHGNLDLAKRAAEALFE--IEPENPATYV 467
               HG  + A    E +    +EP+   TYV
Sbjct: 507 ALAQHGQGEEAVGLFEEMLRAGVEPDR-ITYV 537



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 176/387 (45%), Gaps = 76/387 (19%)

Query: 7   NQRRLKEALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           + + LK   ++LH+ S  P     +S++  C     +  GK+VH+++  +       ++N
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            L+  YAK G++ +A+ + D+  E D  V S+  ++ G+ K G +E AR +F  M  RD 
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +WTAMI GY +  +  EA+DL+R M        N +TL++VLS  +++ CL  GK+IH 
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITC-GPEPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM----------------------- 220
             +R+  +    V +A+  MY + GS   AR++FD++                       
Sbjct: 456 RAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 221 -------------VDRDVVSWTAMIG------------RYFQEGRREEGFA--------- 246
                        V+ D +++  ++             RY+ + + E   A         
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 247 --------LFSE----LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
                   LFSE    + +  + P+A  +  +L+AC  H   EL +     +  I  DP 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI--DPN 633

Query: 295 -SFAASALVHMYSKCGNVENSKKVFNG 320
            S A SA+ ++YS CG   ++ +++  
Sbjct: 634 NSGAYSAIANVYSACGRWSDAARIWKA 660


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 292/504 (57%), Gaps = 38/504 (7%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EA++ L  ++     P+    ++++  C   +A   G+KVHS +   G    V ++N
Sbjct: 38  RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 97

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            +L+MY KCG+   A T+F+ M  R V S+N M+S  T  G ++ A +LF+ MP R   S
Sbjct: 98  SVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVS 157

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI+GY +     +AL L+  M +  +   ++FT++SVLSA + +  +R+GK++H YI
Sbjct: 158 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 217

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK-------------------------- 219
           +RT    +  V +AL   Y K GS+  AR+I D+                          
Sbjct: 218 LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMES 277

Query: 220 -------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
                  M +RDVV+WTAMI  Y Q GR +E   LF  +I  G  PN++T A VL+ CA 
Sbjct: 278 AREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 337

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTS 331
            A  + GKQ+H    R   +  S  ++A++ MY++ G+   ++++F+ +  R + ++WTS
Sbjct: 338 LACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTS 397

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I   AQ+G  ++A+  FE +L++G +PD I +VGVL+AC+HAG V++G +Y+  IK +H
Sbjct: 398 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH 457

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            +     HYAC+VDLLAR+G F EA++ I +MP++PD   W SLL  CR+H N +LA+ A
Sbjct: 458 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 517

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           AE L  I+P N   Y  +AN+Y++
Sbjct: 518 AEKLLSIDPNNSGAYSAIANVYSA 541



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 200/433 (46%), Gaps = 70/433 (16%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           F K G L  AR +F EMP+RD  SWT M+ G  R  +  EA+     M   +     +FT
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFT 60

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG------------- 208
           L++VLS+ +  Q   +G+++H ++++ G  S   V +++ +MYGKCG             
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 209 -----------SINE-------ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
                      S+N        A  +F+ M DR +VSW AMI  Y Q G   +   LFS 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 251 LI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           ++ +S + P+ FT   VL+ACA+     +GKQVH Y+ R      S   +AL+  Y+K G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 310 NVENSKKV---------------------------------FNGMPRPDLVSWTSLIAGY 336
           +VEN++++                                 F  M   D+V+WT++I GY
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
            QNG  D+A++ F  ++  G +P+      VL+ C     +D G Q  H    +  L  +
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ-IHCRAIRSLLEQS 359

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           +     I+ + ARSG F  A  +  ++  + +   W S++     HG  + A    E + 
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 457 E--IEPENPATYV 467
              +EP+   TYV
Sbjct: 420 RAGVEPDR-ITYV 431



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 176/387 (45%), Gaps = 76/387 (19%)

Query: 7   NQRRLKEALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           + + LK   ++LH+ S  P     +S++  C     +  GK+VH+++  +       ++N
Sbjct: 171 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 230

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            L+  YAK G++ +A+ + D+  E D  V S+  ++ G+ K G +E AR +F  M  RD 
Sbjct: 231 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 290

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +WTAMI GY +  +  EA+DL+R M        N +TL++VLS  +++ CL  GK+IH 
Sbjct: 291 VAWTAMIVGYEQNGRNDEAIDLFRSMITC-GPEPNSYTLAAVLSVCASLACLDYGKQIHC 349

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM----------------------- 220
             +R+  +    V +A+  MY + GS   AR++FD++                       
Sbjct: 350 RAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 409

Query: 221 -------------VDRDVVSWTAMIG------------RYFQEGRREEGFA--------- 246
                        V+ D +++  ++             RY+ + + E   A         
Sbjct: 410 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 469

Query: 247 --------LFSE----LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
                   LFSE    + +  + P+A  +  +L+AC  H   EL +     +  I  DP 
Sbjct: 470 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI--DPN 527

Query: 295 -SFAASALVHMYSKCGNVENSKKVFNG 320
            S A SA+ ++YS CG   ++ +++  
Sbjct: 528 NSGAYSAIANVYSACGRWSDAARIWKA 554



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 34/280 (12%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           M+ K G + +AR +F +M +RD VSWT M+    + GR  E      ++   G  P  FT
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL++CA   A  +G++VH ++ ++G       A+++++MY KCG+ E +  VF  MP
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 323 -----------------------------RPD--LVSWTSLIAGYAQNGMPDKALEYFEL 351
                                         PD  +VSW ++IAGY QNG+  KAL+ F  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 352 LL-KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
           +L +S   PD      VL+AC + G V  G Q  H+   +  + Y +     ++   A+S
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQ-VHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 411 GRFHEAEDVISK-MPMKPDKFLWASLLGGCRIHGNLDLAK 449
           G    A  ++ + M    +   + +LL G    G+++ A+
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAR 279


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 292/504 (57%), Gaps = 38/504 (7%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EA++ L  ++     P+    ++++  C   +A   G+KVHS +   G    V ++N
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            +L+MY KCG+   A T+F+ M  R V S+N M+S  T  G ++ A +LF+ MP R   S
Sbjct: 204 SVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVS 263

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI+GY +     +AL L+  M +  +   ++FT++SVLSA + +  +R+GK++H YI
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK-------------------------- 219
           +RT    +  V +AL   Y K GS+  AR+I D+                          
Sbjct: 324 LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMES 383

Query: 220 -------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
                  M +RDVV+WTAMI  Y Q GR +E   LF  +I  G  PN++T A VL+ CA 
Sbjct: 384 AREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 443

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTS 331
            A  + GKQ+H    R   +  S  ++A++ MY++ G+   ++++F+ +  R + ++WTS
Sbjct: 444 LACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTS 503

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I   AQ+G  ++A+  FE +L++G +PD I +VGVL+AC+HAG V++G +Y+  IK +H
Sbjct: 504 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH 563

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            +     HYAC+VDLLAR+G F EA++ I +MP++PD   W SLL  CR+H N +LA+ A
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           AE L  I+P N   Y  +AN+Y++
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSA 647



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/512 (28%), Positives = 238/512 (46%), Gaps = 76/512 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK----CGNISDAQTLF 84
           Y+ L+Q C+       G+ +H+    +G     ++ N LL  Y +     G + DA+ LF
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 85  DE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           DE  +  R+V ++N+++S F K G L  AR +F EMP+RD  SWT M+ G  R  +  EA
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +     M   +     +FTL++VLS+ +  Q   +G+++H ++++ G  S   V +++ +
Sbjct: 149 IKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 203 MYGKCGSINEARQIFDK-------------------------------MVDRDVVSWTAM 231
           MYGKCG    A  +F++                               M  R +VSW AM
Sbjct: 208 MYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAM 267

Query: 232 IGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           I  Y Q G   +   LFS ++ +S + P+ FT   VL+ACA+     +GKQVH Y+ R  
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKV--------------------------------- 317
               S   +AL+  Y+K G+VEN++++                                 
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F  M   D+V+WT++I GY QNG  D+A++ F  ++  G +P+      VL+ C     +
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           D G Q  H    +  L  ++     I+ + ARSG F  A  +  ++  + +   W S++ 
Sbjct: 448 DYGKQ-IHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 438 GCRIHGNLDLAKRAAEALFE--IEPENPATYV 467
               HG  + A    E +    +EP+   TYV
Sbjct: 507 ALAQHGQGEEAVGLFEEMLRAGVEPDR-ITYV 537



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 176/387 (45%), Gaps = 76/387 (19%)

Query: 7   NQRRLKEALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           + + LK   ++LH+ S  P     +S++  C     +  GK+VH+++  +       ++N
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            L+  YAK G++ +A+ + D+  E D  V S+  ++ G+ K G +E AR +F  M  RD 
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +WTAMI GY +  +  EA+DL+R M        N +TL++VLS  +++ CL  GK+IH 
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITC-GPEPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM----------------------- 220
             +R+  +    V +A+  MY + GS   AR++FD++                       
Sbjct: 456 RAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 221 -------------VDRDVVSWTAMIG------------RYFQEGRREEGFA--------- 246
                        V+ D +++  ++             RY+ + + E   A         
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 247 --------LFSE----LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
                   LFSE    + +  + P+A  +  +L+AC  H   EL +     +  I  DP 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI--DPN 633

Query: 295 -SFAASALVHMYSKCGNVENSKKVFNG 320
            S A SA+ ++YS CG   ++ +++  
Sbjct: 634 NSGAYSAIANVYSACGRWSDAARIWKA 660


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 182/466 (39%), Positives = 280/466 (60%), Gaps = 13/466 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + EA ++ +++ H +   ++ L+     N  L+E ++    L  S     +   NCL+  
Sbjct: 155 VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARR----LFESQSNWELISWNCLMGG 210

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y K   + DA+ LFD M  RDV S+NTMISG+ + G L QA+ LF+E P RD F+WTAM+
Sbjct: 211 YVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMV 270

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SGYV+     EA   +  M      V N+ + +++L+     + + +  E+   +     
Sbjct: 271 SGYVQNGMVDEARKYFDEM-----PVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNI 325

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            S    W+ +   YG+ G I +AR++FD M  RD VSW A+I  Y Q G  EE   +F E
Sbjct: 326 SS----WNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVE 381

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + + G   N  TF+  L+ CAD AA ELGKQVHG + + G++   F  +AL+ MY KCG+
Sbjct: 382 MKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
            + +  VF G+   D+VSW ++IAGYA++G   +AL  FE + K+G +PD I  VGVL+A
Sbjct: 442 TDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSA 501

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H+GL+D+G +YF+S+   + +  T+ HY C++DLL R+GR  EAE+++  MP  P   
Sbjct: 502 CSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAA 561

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            W +LLG  RIHGN +L ++AAE +F++EP+N   YV ++N+YA++
Sbjct: 562 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAAS 607



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 206/475 (43%), Gaps = 63/475 (13%)

Query: 35  FCRQNRALEEGKKVHSHLKSS-GFK-PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
            C  N    + +  +S+  SS  FK P +   N  +  + + G+   A  +F+ M  R  
Sbjct: 18  LCTNNYYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSS 77

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
            SYN MISG+ +      AR+LFD+MP+RD FSW  M++GYVR  +  EA  L+ +M   
Sbjct: 78  VSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK- 136

Query: 153 ENSVSNKFTLS------------SVLSAVSAIQCLRLGKEIHGYI-------MRTGFDSD 193
           ++ VS    LS             V + +     +     +  Y+        R  F+S 
Sbjct: 137 KDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQ 196

Query: 194 E----VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
                + W+ L   Y K   + +ARQ+FD+M  RDV+SW  MI  Y Q G   +   LF+
Sbjct: 197 SNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN 256

Query: 250 ELIKSGIRPNAFTFAG-----VLNACADHAAE-----ELGKQVHGYMTRIGYDPYS---- 295
           E   S IR + FT+       V N   D A +      +  ++       GY  Y     
Sbjct: 257 E---SPIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVI 312

Query: 296 ----FAA---------SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
               F A         + ++  Y + G +  ++K+F+ MP+ D VSW ++I+GYAQNG  
Sbjct: 313 AGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHY 372

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           ++AL  F  + + G   +   F   L+ C     ++ G Q  H    K G          
Sbjct: 373 EEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQ-VHGQVVKAGFETGCFVGNA 431

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           ++ +  + G   EA DV   +  K D   W +++ G   HG      R A  LFE
Sbjct: 432 LLGMYFKCGSTDEANDVFEGIEEK-DVVSWNTMIAGYARHG----FGRQALVLFE 481


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 277/455 (60%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++AL EG+++H H+   G+   ++++  L+ MYA+ G + DA  +
Sbjct: 63  PNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKV 122

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    R V SY  +I+G+   G +  AR LFDE+  +D  SW AMISGYV      EAL
Sbjct: 123 FDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +LY+ M    N   ++ T+ +V+SA +    + LG+++H +I   GF S+  + + L D+
Sbjct: 183 ELYKDMMK-TNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDL 241

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F  +  +DV+SW  +IG +      +E   LF E+++SG  PN  T 
Sbjct: 242 YSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTM 301

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             VL ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E +K+VF+ M
Sbjct: 302 LSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM 361

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  + A + F  + K+G  PD I FVG+L+AC+H+G++D G 
Sbjct: 362 LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR 421

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+ + + +T   +HY C++DLL   G F EA+++I  MPM+PD  +W SLL  C++
Sbjct: 422 HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKM 481

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           H N++L +  A+ L +IEPENP +YV ++NIYA+A
Sbjct: 482 HNNVELGESYAQNLIKIEPENPGSYVLLSNIYATA 516



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 40/292 (13%)

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A  IF+ + + +++ W  M   +           L+  +I  G+ PN+++F  +L +CA 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE-------------------- 312
             A   G+Q+HG++ ++GYD   +  ++L+ MY++ G +E                    
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 313 -----------NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
                      N++K+F+ +   D+VSW ++I+GY +     +ALE ++ ++K+  +PD 
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
              V V++AC  +G ++ G Q  HS  E HG          ++DL ++ G    A  +  
Sbjct: 198 STMVTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
            +  K D   W +L+GG   H +++L K A     E L   E  N  T +++
Sbjct: 257 GLA-KKDVISWNTLIGG---HTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 185/468 (39%), Positives = 291/468 (62%), Gaps = 23/468 (4%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           +++  C   +AL + K++HS+   +G     F+ N L+D YAKCG+++DA  +F+ M+ +
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLY 146
           DV S+N M++G+T+ G+   A  LF+ M +     D  +W+A+I+GY +     EALD +
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS------------DE 194
           + M   + S  N  T+ S+LSA +++  L  G EIH Y ++    S            D 
Sbjct: 384 QQMI-LDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDL 442

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           +V++AL DMY KC S   AR IFD +   +R+VV+WT MIG Y Q G   +   +FSE+I
Sbjct: 443 MVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 253 KS--GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDP-YSFAASALVHMYSKC 308
                + PNA+T + +L ACA  AA  +GKQ+H Y+TR   Y+P   F A+ L+ MYSKC
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+V+ ++ VF+ MP+ + VSWTS+++GY  +G   +AL+ F+ + K+G  PD I F+ +L
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC+H+G+VD+GL YF  ++  + +  +A+HYAC++DLLAR GR  +A   I +MPM+P 
Sbjct: 623 YACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPS 682

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W +LL  CR+H N++LA+ A   L  ++ EN  +Y  ++NIYA+A
Sbjct: 683 AVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANA 730



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 244/522 (46%), Gaps = 75/522 (14%)

Query: 12  KEALQILHQISHPSPSIYSSLI--QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           K+AL +L +++ PSP+++ +L+  +  ++   L+    V   +  +G KP  F     L 
Sbjct: 100 KDALSVLERVT-PSPAVWWNLLVREHIKEGH-LDRAIGVSCRMLRAGTKPDHFTLPYALK 157

Query: 70  MYAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---D 122
              +  +    + L   +     E +V   N +++ +++ GSLE A  +FDE+ ++   D
Sbjct: 158 ACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDD 217

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMM-----QNFENSVSNKFTLSSVLSAVSAIQCLRL 177
             SW ++++ +V+ + P  AL+L+  M     +   N  S+  ++ ++L A ++++ L  
Sbjct: 218 VISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQ 277

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            KEIH Y +R G  +D  V +AL D Y KCGS+N+A ++F+ M  +DVVSW AM+  Y Q
Sbjct: 278 IKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQ 337

Query: 238 EG------------RRE-----------------------EGFALFSELIKSGIRPNAFT 262
            G            R+E                       E    F ++I  G  PN+ T
Sbjct: 338 SGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVT 397

Query: 263 FAGVLNACADHAAEELGKQVHGYMTR------------IGYDPYSFAASALVHMYSKCGN 310
              +L+ACA   A   G ++H Y  +             G        +AL+ MYSKC +
Sbjct: 398 IISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRS 457

Query: 311 VENSKKVFNGMPRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLKS--GTQPDHIVFVG 366
            + ++ +F+ +PR +  +V+WT +I GYAQ G  + AL+ F  ++       P+      
Sbjct: 458 FKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISC 517

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPM 425
           +L AC H   +  G Q    +   H    +    A C++D+ ++ G    A +V   MP 
Sbjct: 518 ILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP- 576

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467
           K ++  W S++ G  +HG      R  EAL   +    A +V
Sbjct: 577 KRNEVSWTSMMSGYGMHG------RGKEALDIFDKMQKAGFV 612



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 163/349 (46%), Gaps = 50/349 (14%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFK------ 58
           C+Q  L    Q++   S P+     SL+  C    AL +G ++H++ LK           
Sbjct: 375 CSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFG 434

Query: 59  -----PGVFISNCLLDMYAKCGNISDAQTLFDEM--QERDVCSYNTMISGFTKGGSLEQA 111
                  + + N L+DMY+KC +   A+++FD +  +ER+V ++  MI G+ + G    A
Sbjct: 435 GDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDA 494

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
             +F EM                  ++P                  N +T+S +L A + 
Sbjct: 495 LKIFSEM-----------------ISKPYAV-------------APNAYTISCILMACAH 524

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEV--VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           +  LR+GK+IH Y+ R       V  V + L DMY KCG ++ AR +FD M  R+ VSWT
Sbjct: 525 LAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWT 584

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           +M+  Y   GR +E   +F ++ K+G  P+  +F  +L AC+     + G      M R 
Sbjct: 585 SMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRR- 643

Query: 290 GYDPYSFAA--SALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            YD  + A   + ++ + ++CG ++ + K    MP  P  V W +L++ 
Sbjct: 644 DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 182/405 (44%), Gaps = 61/405 (15%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSV 156
           +++ +   G+ + A ++ + +       W  ++  +++      A+ +  RM++    + 
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLR--AGTK 146

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            + FTL   L A   +     G+ +HG I   GF+S+  V +AL  MY +CGS+ +A  +
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 217 FDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELI------KSGIRPNAFTFAGVL 267
           FD++  +   DV+SW +++  + +         LFSE+        +  R +  +   +L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            ACA   A    K++H Y  R G    +F  +AL+  Y+KCG++ ++ KVFN M   D+V
Sbjct: 267 PACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVV 326

Query: 328 SWTSL-----------------------------------IAGYAQNGMPDKALEYFELL 352
           SW ++                                   IAGYAQ G   +AL+ F+ +
Sbjct: 327 SWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH------------Y 400
           +  G++P+ +  + +L+AC   G + +G++  H+   K  L    +             Y
Sbjct: 387 ILDGSEPNSVTIISLLSACASLGALSQGME-IHAYSLKKCLLSLDNDFGGDGDGEDLMVY 445

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLGGCRIHGN 444
             ++D+ ++   F  A  +   +P +    + W  ++GG   +G+
Sbjct: 446 NALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGD 490



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + +V  Y  CG  +++  V   +     V W  L+  + + G  D+A+     +L++GT+
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTADHYAC--IVDLLARSGR 412
           PDH      L AC         L  +   +  HGL     + ++ + C  +V + +R G 
Sbjct: 147 PDHFTLPYALKACGE-------LPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGS 199

Query: 413 FHEAEDVISKMPMK--PDKFLWASLLGG 438
             +A  V  ++  K   D   W S++  
Sbjct: 200 LEDASLVFDEITRKGIDDVISWNSIVAA 227


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  357 bits (916), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 180/470 (38%), Positives = 280/470 (59%), Gaps = 21/470 (4%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + +A ++  ++   +   +++L+    QN  LEE       L  S     +   NCLL  
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEA----CVLFGSRENWALVSWNCLLGG 223

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           + K   I +A+  FD M+ RDV S+NT+I+G+ + G +++AR LFDE P  D F+WTAM+
Sbjct: 224 FVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMV 283

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SGY++     EA +L+  M        N+ + +++L+     + + + KE+        F
Sbjct: 284 SGYIQNRMVEEARELFDRMPE-----RNEVSWNAMLAGYVQGERVEMAKEL--------F 330

Query: 191 D----SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           D     +   W+ +   Y +CG I+EA+ +FDKM  RD VSW AMI  Y Q G   E   
Sbjct: 331 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALR 390

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF  + + G R N  +F+  L+ CAD  A ELGKQ+HG + + GY+   F  +AL+ MY 
Sbjct: 391 LFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 450

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E +  +F  M   D+VSW ++IAGY+++G  ++AL +FE + + G +PD    V 
Sbjct: 451 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVA 510

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLVDKG QYFH++ + +G+   + HYAC+VDLL R+G   EA +++  MP +
Sbjct: 511 VLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFE 570

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LLG  R+HGN +LA+ AA+ +F +EPEN   YV ++N+YAS+
Sbjct: 571 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 620



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 218/452 (48%), Gaps = 35/452 (7%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R  EAL++  ++   S   Y+++I    +N   E  + +   +     +  +   N ++ 
Sbjct: 74  RCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP----ERDLVSWNVMIK 129

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y +  N+  A+ LF+ M ERDVCS+NT++SG+ + G ++ AR +FD MP++++ SW A+
Sbjct: 130 GYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNAL 189

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG--KEIHGYIMR 187
           +S YV+ ++  EA  L+   +N+               A+ +  CL  G  K+      R
Sbjct: 190 LSAYVQNSKLEEACVLFGSRENW---------------ALVSWNCLLGGFVKKKKIVEAR 234

Query: 188 TGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
             FDS    D V W+ +   Y + G I+EARQ+FD+    DV +WTAM+  Y Q    EE
Sbjct: 235 QFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEE 294

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF  + +     N  ++  +L         E+ K++   M       +    + ++ 
Sbjct: 295 ARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTW----NTMIT 346

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            Y++CG +  +K +F+ MP+ D VSW ++IAGY+Q+G   +AL  F L+ + G + +   
Sbjct: 347 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSS 406

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F   L+ C     ++ G Q  H    K G          ++ +  + G   EA D+  +M
Sbjct: 407 FSSALSTCADVVALELGKQ-LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 465

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             K D   W +++ G   HG  + A R  E++
Sbjct: 466 AGK-DIVSWNTMIAGYSRHGFGEEALRFFESM 496



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 167/352 (47%), Gaps = 35/352 (9%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+  +N  IS + + G   +A  +F  MP+  + S+ AMISGY+R  +     +L RM+ 
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGE----FELARML- 112

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
            F+          +V+     ++   LGK     +     + D   W+ +   Y + G +
Sbjct: 113 -FDEMPERDLVSWNVMIK-GYVRNRNLGKARE--LFERMPERDVCSWNTILSGYAQNGCV 168

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++AR++FD+M +++ VSW A++  Y Q  + EE   LF      G R N   +A V   C
Sbjct: 169 DDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSREN---WALVSWNC 219

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYS----FAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
                 +  K V     R  +D        + + ++  Y++ G ++ ++++F+  P  D+
Sbjct: 220 LLGGFVKKKKIVEA---RQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV 276

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            +WT++++GY QN M ++A E F+ +     + + + +  +L        V+   + F  
Sbjct: 277 FTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQGERVEMAKELFDV 332

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +  ++  T+       ++   A+ G+  EA+++  KMP K D   WA+++ G
Sbjct: 333 MPCRNVSTWNT-----MITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 113/253 (44%), Gaps = 28/253 (11%)

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
           DSD   W+     Y + G  +EA ++F +M     VS+ AMI  Y + G  E    LF E
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + +  +        G +          LGK    +      D  S+  + ++  Y++ G 
Sbjct: 116 MPERDLVSWNVMIKGYVR------NRNLGKARELFERMPERDVCSW--NTILSGYAQNGC 167

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           V+++++VF+ MP  + VSW +L++ Y QN   ++A   F      G++ +  +   V   
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSRENWAL---VSWN 218

Query: 371 CTHAGLVDK-----GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           C   G V K       Q+F S+K +  +++       I+   A++G   EA  +  + P+
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMKVRDVVSWNT-----IITGYAQNGEIDEARQLFDESPV 273

Query: 426 KPDKFLWASLLGG 438
             D F W +++ G
Sbjct: 274 H-DVFTWTAMVSG 285



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 113/253 (44%), Gaps = 23/253 (9%)

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
           D D+  W   I  Y + GR  E   +F  +     R ++ ++  +++    +   EL + 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRM----PRWSSVSYNAMISGYLRNGEFELARM 111

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +   M     D  S+  + ++  Y +  N+  ++++F  MP  D+ SW ++++GYAQNG 
Sbjct: 112 LFDEMPE--RDLVSW--NVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGC 167

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            D A   F+ +     + + + +  +L+A      +++    F S +E   L      + 
Sbjct: 168 VDDARRVFDRM----PEKNDVSWNALLSAYVQNSKLEEACVLFGS-RENWALV----SWN 218

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C++    +  +  EA      M ++ D   W +++ G   +G +D A++    LF+  P 
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMKVR-DVVSWNTIITGYAQNGEIDEARQ----LFDESPV 273

Query: 462 NPA-TYVTMANIY 473
           +   T+  M + Y
Sbjct: 274 HDVFTWTAMVSGY 286


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  357 bits (915), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 187/465 (40%), Positives = 286/465 (61%), Gaps = 7/465 (1%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSS-GFKPGVFISNCLLDMYAK 73
           ++L+    P+   +  L + C + +A  EGK++H+H LK +  F P V  S  ++ MYA 
Sbjct: 121 RMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTS--VIHMYAS 178

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
            G +  A+ +FD+   RD  S+  +I+G+   G L+ AR LFDE+P +D  SW AMISGY
Sbjct: 179 VGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGY 238

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           V+  +  EA+  +  MQ   N + NK T+  VLSA    +   LGK I  ++   GF S+
Sbjct: 239 VQSGRFEEAIVCFYEMQE-ANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSN 297

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             + +AL DMY KCG  + AR++FD + ++DV+SW  MIG Y      EE  ALF  +++
Sbjct: 298 LQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLR 357

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVE 312
           S ++PN  TF G+L+ACA   A +LGK VH Y+ + +     +   ++L+ MY+KCG +E
Sbjct: 358 SNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIE 417

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTAC 371
            +++VF  M   +L SW ++++G+A +G  ++AL  F  ++  G  +PD I FVGVL+AC
Sbjct: 418 AAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSAC 477

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           T AGLVD G QYF S+ + +G++    HY C++DLLAR+ +F EAE ++  M M+PD  +
Sbjct: 478 TQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAI 537

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W SLL  C+ HG ++  +  AE LF++EPEN   +V ++NIYA A
Sbjct: 538 WGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGA 582



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 232/458 (50%), Gaps = 44/458 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA--K 73
           +IL Q  HP    Y +L++ C+    +   K++HS +  +G    VF+ + L+   A   
Sbjct: 24  KILEQ--HP----YLNLLEKCKN---INTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSP 74

Query: 74  CGNISDAQTLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSW 126
            G++S A +LF+E Q+    +V  +N++I G++   S   + +LF  M     Q ++ ++
Sbjct: 75  SGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTF 134

Query: 127 TAMISGYVRYNQPIEALDLY----RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             +     +     E   L+    ++  +F     N    +SV+   +++  +   + + 
Sbjct: 135 PFLFKSCTKAKATHEGKQLHAHALKLALHF-----NPHVHTSVIHMYASVGEMDFARLV- 188

Query: 183 GYIMRTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
                  FD     D V ++AL   Y   G +++AR++FD++  +DVVSW AMI  Y Q 
Sbjct: 189 -------FDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           GR EE    F E+ ++ + PN  T   VL+AC    + ELGK +  ++   G+       
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLT 301

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +AL+ MY KCG  + ++++F+G+   D++SW ++I GY+   + ++AL  FE++L+S  +
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+ + F+G+L AC   G +D G      I +    +  A  +  ++D+ A+ G    AE 
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAER 421

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           V   M  + +   W ++L G  +HG+   A+RA  ALF
Sbjct: 422 VFRSMHSR-NLASWNAMLSGFAMHGH---AERAL-ALF 454


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 180/480 (37%), Positives = 284/480 (59%), Gaps = 34/480 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQTLFDE 86
           + +SL+Q C   ++L++GK +H HLK +GFK P   +SN L+ MY KCG   DA  +FD+
Sbjct: 48  LLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQ 107

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M  R++ S+N M+SG+ K G L +AR +FD MP+RD  SW  M+ GY +     EAL  Y
Sbjct: 108 MHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFY 167

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           +  +       N+F+ + +L+A    + L+L ++ HG ++  GF S+ V+  ++ D Y K
Sbjct: 168 KEFRR-SGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAK 226

Query: 207 CGSINEARQIFDKMVDRDV-------------------------------VSWTAMIGRY 235
           CG +  A++ FD+M  +D+                               VSWTA+I  Y
Sbjct: 227 CGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGY 286

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            ++G       LF ++I  G++P  FTF+  L A A  A+   GK++HGYM R    P +
Sbjct: 287 VRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNA 346

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
              S+L+ MYSK G++E S++VF     + D V W ++I+  AQ+G+  KAL   + ++K
Sbjct: 347 IVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIK 406

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
              QP+    V +L AC+H+GLV++GL++F S+  +HG+    +HYAC++DLL R+G F 
Sbjct: 407 FRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK 466

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           E    I +MP +PDK +W ++LG CRIHGN +L K+AA+ L +++PE+ A Y+ +++IYA
Sbjct: 467 ELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYA 526



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 128/291 (43%), Gaps = 51/291 (17%)

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R +    + + ++  +    +  +    L + GIR      A +L  C D  + + GK +
Sbjct: 9   RPICVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWI 68

Query: 283 HGYMTRIGYD-PYSFAASALVHMYSKCGN------------------------------- 310
           H ++   G+  P +  ++ L+ MY KCG                                
Sbjct: 69  HRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGM 128

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +  ++ VF+ MP  D+VSW +++ GYAQ+G   +AL +++   +SG + +   F G+LTA
Sbjct: 129 LVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTA 188

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVISKMP 424
           C  +    + LQ     ++ HG    A   +       I+D  A+ G+   A+    +M 
Sbjct: 189 CVKS----RQLQLN---RQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMT 241

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIYA 474
           +K D  +W +L+ G    G+++    AAE LF E+  +NP ++  +   Y 
Sbjct: 242 VK-DIHIWTTLISGYAKLGDME----AAEKLFCEMPEKNPVSWTALIAGYV 287



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 117/270 (43%), Gaps = 40/270 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +SS +       +L  GK++H ++  +  +P   + + L+DMY+K G++  ++ +
Sbjct: 309 PEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERV 368

Query: 84  FDEMQERDVCSY-NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN-QPIE 141
           F    ++  C + NTMIS   + G   +A  + D+M               +++  QP  
Sbjct: 369 FRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDM---------------IKFRVQP-- 411

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-KEIHGYIMRTGFDSDEVVWSAL 200
                           N+ TL  +L+A S    +  G +      ++ G   D+  ++ L
Sbjct: 412 ----------------NRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACL 455

Query: 201 SDMYGKCGSINE-ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
            D+ G+ G   E  R+I +   + D   W A++G     G  E G     ELIK  + P 
Sbjct: 456 IDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIK--LDPE 513

Query: 260 AFTFAGVLNAC-ADHAAEELGKQVHGYMTR 288
           +     +L++  ADH   EL +++ G M +
Sbjct: 514 SSAPYILLSSIYADHGKWELVEKLRGVMKK 543


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 179/480 (37%), Positives = 285/480 (59%), Gaps = 34/480 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQTLFDE 86
           + +SL+Q C   ++L++GK +H HLK +GFK P   +SN L+ MY KCG   DA  +FD+
Sbjct: 48  LLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQ 107

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M  R++ S+N M+SGF K G L +AR +FD MP+RD  SW  M+ GY +     EAL  +
Sbjct: 108 MHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFF 167

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           + ++       N+F+ + +L+A    + L+L ++ HG ++  GF S+ V+  ++ D Y K
Sbjct: 168 KELRR-SGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAK 226

Query: 207 CGSINEARQIFDKMVDRDV-------------------------------VSWTAMIGRY 235
           CG +  A++ FD+M  +D+                               VSWTA+I  Y
Sbjct: 227 CGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGY 286

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            ++G  +    LF ++I   ++P  FTF+  L A A  A+   GKQ+HGYM R    P +
Sbjct: 287 VRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNA 346

Query: 296 FAASALVHMYSKCGNVENSKKVFN-GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
              S+L+ MYSK G++E S++VF     + D V W ++I+  AQ+G+  KAL+  + ++K
Sbjct: 347 IVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIK 406

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
               P+    V +L AC+H+GLV++G+++F S+  +HG+    +HYAC++DLL R+G F 
Sbjct: 407 FRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK 466

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           E    I +MP +PDK +W ++LG CRIHGN +L K+AAE L +++PE+ A Y+ +++IYA
Sbjct: 467 ELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYA 526



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 51/291 (17%)

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R +    +++ R+  +    +  +    L + GIR      A +L  C D  + + GK +
Sbjct: 9   RPICVARSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWI 68

Query: 283 HGYMTRIGYD-PYSFAASALVHMYSKCGN------------------------------- 310
           H ++   G+  P +  ++ L+ MY KCG                                
Sbjct: 69  HRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGM 128

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +  ++ VF+ MP  D+VSW +++ GYAQ+G   +AL +F+ L +SG + +   F G+LTA
Sbjct: 129 LVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTA 188

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVISKMP 424
           C  +    + LQ     ++ HG    A   +       I+D  A+ G+   A+    +M 
Sbjct: 189 CVKS----RQLQLN---QQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMT 241

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYA 474
           +K D  +W +L+ G    G+++    AA+ LF   PE NP ++  +   Y 
Sbjct: 242 VK-DIHIWTTLISGYAKLGDME----AADKLFREMPEKNPVSWTALIAGYV 287



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 38/269 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +SS +       +L  GK++H ++  +  +P   +++ L+DMY+K G++  ++ +
Sbjct: 309 PEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERV 368

Query: 84  FDEMQERDVCS-YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           F    ++  C  +NTMIS   + G   +A  + D+M +                      
Sbjct: 369 FRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIK---------------------- 406

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-KEIHGYIMRTGFDSDEVVWSALS 201
              +R+         N+ TL  +L+A S    +  G +      ++ G   D+  ++ L 
Sbjct: 407 ---FRVH-------PNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLI 456

Query: 202 DMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
           D+ G+ G   E     ++M  + D   W A++G     G  E G     ELIK  + P +
Sbjct: 457 DLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIK--LDPES 514

Query: 261 FTFAGVLNAC-ADHAAEELGKQVHGYMTR 288
                +L++  ADH   EL +++ G M +
Sbjct: 515 SAPYILLSSIYADHGKWELVEKLRGIMKK 543


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 280/455 (61%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A +EG+++H H+   G+   +F+   L+ +Y + G + DA+ +
Sbjct: 132 PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKV 191

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  +I G+   G +E A+ LFDE+P +D  SW AMISGY       EAL
Sbjct: 192 FDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +V+SA +    + LG+++H +I   GF S+  + ++L D+
Sbjct: 252 ELFKEMMK-TNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDL 310

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ ++ +DV+SW  +IG Y      +E   LF E+++SG RPN  T 
Sbjct: 311 YSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTM 370

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA--SALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A ++G+ +H Y+ +      + ++  ++L+ MY+KCG++E + +VFN +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  D A + F  + K G +PD I FVG+L+AC+ +G++D G 
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGR 490

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F ++ + + +T   +HY C++DLL  SG F EAE++I+ M M+PD  +W SLL  C+I
Sbjct: 491 HIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKI 550

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            GN++L +  A+ L +IEPENP  YV ++NIYA+A
Sbjct: 551 RGNVELGESFAQNLIKIEPENPGCYVLLSNIYATA 585



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 161/335 (48%), Gaps = 49/335 (14%)

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC------ 207
           +S+ N  +LS +L     +Q LRL   IH  +++TG  +      ALS +   C      
Sbjct: 29  DSLRNHPSLS-LLHNCKTLQSLRL---IHAQMIKTGLHNTNY---ALSKLLELCVISPHF 81

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
             +  A  +F+ + + +++ W  M   +           L+  +I  G+ PN++TF  +L
Sbjct: 82  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 141

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV---------- 317
            +CA   A + G+Q+HG++ ++GYD   F  ++L+ +Y + G +E+++KV          
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201

Query: 318 ---------------------FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
                                F+ +P  D+VSW ++I+GYA+ G   +ALE F+ ++K+ 
Sbjct: 202 SYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN 261

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD    V V++AC  +G ++ G Q  HS  + HG          ++DL ++ G    A
Sbjct: 262 IRPDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
             +   +  K D   W +L+GG   + +++L K A
Sbjct: 321 CGLFEGLLYK-DVISWNTLIGG---YTHMNLYKEA 351



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 90/199 (45%), Gaps = 10/199 (5%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN---SKKVFNGMPRPDLVSWTSLIAGY 336
           + +H  M + G    ++A S L+ +     + +    +  VF  +  P+L+ W ++  G+
Sbjct: 50  RLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 109

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           A +  P  AL+ +  ++  G  P+   F  +L +C  +    +G Q  H    K G    
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEG-QQIHGHVLKLGYDLD 168

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
              +  ++ +  ++GR  +A  V  + P + D   + +L+ G    G ++    +A+ LF
Sbjct: 169 LFVHTSLISVYVQNGRLEDARKVFDRSPHR-DVVSYTALIKGYASRGYIE----SAQKLF 223

Query: 457 -EIEPENPATYVTMANIYA 474
            EI  ++  ++  M + YA
Sbjct: 224 DEIPVKDVVSWNAMISGYA 242


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 303/500 (60%), Gaps = 37/500 (7%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +K  +++L     P+   ++S+++ C        G  V   +  +G++  + +SN L+ +
Sbjct: 169 MKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITL 228

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
             + G I  A+ +FD M+E+DV S+  ++  + +   L +AR +FDEMPQR+  SW+AMI
Sbjct: 229 CLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMI 288

Query: 131 SGYVRYNQPIEALDLY-RMMQN-FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           + Y +   P E+L L+ RM+Q  F+ ++S     SS+LSA+++++ L+ G  IHG++ + 
Sbjct: 289 ARYCQSGYPEESLRLFCRMIQEGFKPNIS---CFSSILSALASVEALQAGMNIHGHVTKI 345

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG---- 244
           GF+ D  V S+L DMY KCG   + R +FD ++++++VSW AM+G Y   G  EE     
Sbjct: 346 GFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLF 405

Query: 245 ---------------------------FALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
                                      F +F+E+I  G  PN  TF+ +L ACA  A+ +
Sbjct: 406 NIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLD 465

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            GK +HG + ++G    ++  +AL  MY+K G++E+SKKVFN MP+ + VSWT++I G A
Sbjct: 466 KGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLA 525

Query: 338 QNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           ++G+ +++L  FE + K S   P+ ++F+ VL AC+H+GLVDKGL YF+S++  +GL   
Sbjct: 526 ESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPK 585

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
             H+ C+VD+L+R+GR  EAE+ I  MP +P+   WA+LL GC+ + N +LA+R A  L+
Sbjct: 586 GRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLW 645

Query: 457 EIEPENPATYVTMANIYASA 476
           E+  +N A YV ++NIYASA
Sbjct: 646 EMAEKNCAGYVLLSNIYASA 665



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/501 (28%), Positives = 235/501 (46%), Gaps = 96/501 (19%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL++       + +G  +H+HL  +G     +IS  LL MY      ++A  +  +    
Sbjct: 26  SLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGF 85

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+  +N MIS   + G+L++AR LFDEMPQ +  SWTA+ISG+++Y +  E++  Y    
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESM-WYFERN 144

Query: 151 NFENSVS-------------------------------NKFTLSSVLSAVSAIQCLRLGK 179
            F+N VS                               NK T +SV+ A + +    LG 
Sbjct: 145 PFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGM 204

Query: 180 EIHGYIMRTGFD-------------------------------SDEVVWSALSDMYGKCG 208
            + G I++TG++                                D V W+A+ D+Y +  
Sbjct: 205 SVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMD 264

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + EAR+IFD+M  R+ VSW+AMI RY Q G  EE   LF  +I+ G +PN   F+ +L+
Sbjct: 265 ELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILS 324

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A A   A + G  +HG++T+IG++   F +S+L+ MY KCG  ++ + +F+ +   ++VS
Sbjct: 325 ALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVS 384

Query: 329 WTSLIAGYAQNG-----------MP--------------------DKALEYFELLLKSGT 357
           W +++ GY+ NG           MP                    D+  E F  ++  G 
Sbjct: 385 WNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGE 444

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+   F  +L AC     +DKG +  H    K G+         + D+ A+SG    ++
Sbjct: 445 IPNKSTFSSLLCACASTASLDKG-KNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSK 503

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            V ++MP K ++  W +++ G
Sbjct: 504 KVFNRMP-KKNEVSWTAMIQG 523



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 124/316 (39%), Gaps = 44/316 (13%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T  S+L  ++    +R G  +H ++ +TG  S++ +   L  MY       EA QI    
Sbjct: 23  TCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDF 82

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
              D+V    MI    Q G  +E   LF E+ ++                          
Sbjct: 83  DGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTN------------------------- 117

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
                           + +AL+  + K G V  S   F   P  ++VSWT+ I+GY QNG
Sbjct: 118 --------------EISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNG 163

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +A++ F  LL+S  +P+ + F  V+ AC + G    G+     I  K G  +     
Sbjct: 164 FSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIV-KTGYEHDLAVS 222

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
             ++ L  R G  H A +V  +M  K D   W ++L    ++  +D    A     E+  
Sbjct: 223 NSLITLCLRMGEIHLAREVFDRMEEK-DVVSWTAILD---LYVEMDELGEARRIFDEMPQ 278

Query: 461 ENPATYVTMANIYASA 476
            N  ++  M   Y  +
Sbjct: 279 RNEVSWSAMIARYCQS 294


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/412 (41%), Positives = 256/412 (62%), Gaps = 9/412 (2%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           NCL+  + +   + DA+ LFD+M  RD  S+NTMISG+ +GG L QAR LFDE P RD F
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVF 267

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTAM+SGYV+     EA   +  M        N+ + +++++     + + + +E+   
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPE-----KNEVSYNAMIAGYVQTKKMDIARELFES 322

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +      S    W+ +   YG+ G I +AR+ FD M  RD VSW A+I  Y Q G  EE 
Sbjct: 323 MPCRNISS----WNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             +F E+ + G   N  TF   L+ CAD AA ELGKQ+HG   ++GY    F  +AL+ M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCG+++ +   F G+   D+VSW +++AGYA++G   +AL  FE +  +G +PD I  
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL+AC+H GL+D+G +YF+S+ + +G+  T+ HY C++DLL R+GR  EA+D+I  MP
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +P    W +LLG  RIHGN +L ++AAE +F++EP+N   YV ++N+YA++
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAAS 610



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 195/463 (42%), Gaps = 61/463 (13%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           I F   + +    + V ++ K     P +   N  +  + + G+   A  +F+ M  R  
Sbjct: 21  INFGHTSTSTRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSS 80

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--- 149
            SYN MISG+ +      ARNLFD+MP+RD FSW  M++GYVR  +  +A  L+ +M   
Sbjct: 81  VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK 140

Query: 150 -------------QN---------FEN-SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                        QN         F+N    N  + + +L+A   +   R+  E    + 
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAY--VHNGRI--EEACLLF 196

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +  D D + W+ L   + +   + +AR +FDKM  RD +SW  MI  Y Q G   +   
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARR 256

Query: 247 LFSE---------------LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           LF E                +++G+   A TF    +   +         + GY+     
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTF---FDEMPEKNEVSYNAMIAGYVQTKKM 313

Query: 292 D---------PYSFAAS--ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           D         P    +S   ++  Y + G++  ++K F+ MP+ D VSW ++IAGYAQ+G
Sbjct: 314 DIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             ++AL  F  + + G   +   F   L+ C     ++ G Q  H    K G        
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQ-IHGQAVKMGYGTGCFVG 432

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             ++ +  + G   EA D    +  K D   W ++L G   HG
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 195/509 (38%), Gaps = 94/509 (18%)

Query: 12  KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +  +I     S+    +   +  C    ALE GK++H      G+  G F+ N L
Sbjct: 376 EEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNAL 435

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L MY KCG+I +A   F+ ++E+DV S+NTM++G+ + G   QA  +F+ M        T
Sbjct: 436 LAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK-------T 488

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-IHGYIM 186
           A +                           ++ T+  VLSA S    L  G E  +    
Sbjct: 489 AGVK-------------------------PDEITMVGVLSACSHTGLLDRGTEYFYSMTK 523

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGF 245
             G       ++ + D+ G+ G + EA+ +   M       SW A++G     G  E G 
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP---YSFA-ASAL 301
              +E++      N+  +  + N  A         ++   M  IG      YS+      
Sbjct: 584 KA-AEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNK 642

Query: 302 VHMYS--KCGNVENSKKVFNGMPRPDL-------VSWTSLIAGYAQNGMPDKALEY---- 348
           +H +S   C + E  ++++  +   DL       VS T L+    +    +  L+Y    
Sbjct: 643 IHTFSVGDCSHPE-KERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEK 701

Query: 349 ----FELLLKSGTQPDHI-----VFVGVLTACTHAG------LVDKGLQYFHSIKEKHGL 393
               F +L   G +P  +     V     +A  H        ++ +    FH   E  G 
Sbjct: 702 LAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNE--GF 759

Query: 394 TYTADHY------ACIVDLLARSGR--FHEAEDVISKMPMKPDKFLWASLLG-------- 437
               D++        I   L  +G   F+   +  S  P          LLG        
Sbjct: 760 CSCGDYWLQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG 819

Query: 438 ----GCRIHGNLDLAKRAAEALFEIEPEN 462
                 RIHGN +L ++AA+  F++ P+N
Sbjct: 820 ALLGASRIHGNTELGEKAAQMFFKMGPQN 848


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/412 (41%), Positives = 256/412 (62%), Gaps = 9/412 (2%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           NCL+  + +   + DA+ LFD+M  RD  S+NTMISG+ +GG L QAR LFDE P RD F
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVF 267

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTAM+SGYV+     EA   +  M        N+ + +++++     + + + +E+   
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPE-----KNEVSYNAMIAGYVQTKKMDIARELFES 322

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +      S    W+ +   YG+ G I +AR+ FD M  RD VSW A+I  Y Q G  EE 
Sbjct: 323 MPCRNISS----WNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             +F E+ + G   N  TF   L+ CAD AA ELGKQ+HG   ++GY    F  +AL+ M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCG+++ +   F G+   D+VSW +++AGYA++G   +AL  FE +  +G +PD I  
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL+AC+H GL+D+G +YF+S+ + +G+  T+ HY C++DLL R+GR  EA+D+I  MP
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +P    W +LLG  RIHGN +L ++AAE +F++EP+N   YV ++N+YA++
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAAS 610



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 195/463 (42%), Gaps = 61/463 (13%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           I F   + +    + V ++ K     P +   N  +  + + G+   A  +F+ M  R  
Sbjct: 21  INFGHTSTSTRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSS 80

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--- 149
            SYN MISG+ +      ARNLFD+MP+RD FSW  M++GYVR  +  +A  L+ +M   
Sbjct: 81  VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK 140

Query: 150 -------------QN---------FEN-SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                        QN         F+N    N  + + +L+A   +   R+  E    + 
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAY--VHNGRI--EEACLLF 196

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +  D D + W+ L   + +   + +AR +FDKM  RD +SW  MI  Y Q G   +   
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARR 256

Query: 247 LFSE---------------LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           LF E                +++G+   A TF    +   +         + GY+     
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTF---FDEMPEKNEVSYNAMIAGYVQTKKM 313

Query: 292 D---------PYSFAAS--ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           D         P    +S   ++  Y + G++  ++K F+ MP+ D VSW ++IAGYAQ+G
Sbjct: 314 DIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             ++AL  F  + + G   +   F   L+ C     ++ G Q  H    K G        
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQ-IHGQAVKMGYGTGCFVG 432

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             ++ +  + G   EA D    +  K D   W ++L G   HG
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 38/239 (15%)

Query: 12  KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +  +I     S+    +   +  C    ALE GK++H      G+  G F+ N L
Sbjct: 376 EEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNAL 435

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L MY KCG+I +A   F+ ++E+DV S+NTM++G+ + G   QA  +F+ M        T
Sbjct: 436 LAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK-------T 488

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-IHGYIM 186
           A +       +P E                   T+  VLSA S    L  G E  +    
Sbjct: 489 AGV-------KPDE------------------ITMVGVLSACSHTGLLDRGTEYFYSMTK 523

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEG 244
             G       ++ + D+ G+ G + EA+ +   M       SW A++G     G  E G
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 276/455 (60%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A  EG+++H H+   G    +++   L+ MY K G   DA+ +
Sbjct: 101 PNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKV 160

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+   RDV SY  +I G+   G +  A+ +FDE+P +D  SW A+ISGY       EAL
Sbjct: 161 FDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEAL 220

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +VLSA +    + LG+++H +I   GF S+  + +AL D+
Sbjct: 221 ELFKEMMK-TNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 279

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ +  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 280 YIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTM 339

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E +++VF+ M
Sbjct: 340 LSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 399

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  + A + F  + K G +PD I FVG+L+AC+H+G++D G 
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+ E + +T   +HY C++DLL  SG F EAE++I+ M M PD  +W SLL  C++
Sbjct: 460 HIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKM 519

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L +  A+ L +IEP+N  +YV ++NIYA+A
Sbjct: 520 HGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATA 554



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 187/374 (50%), Gaps = 36/374 (9%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L  A ++FD + + +   W  M  G+   + P+ AL LY  M +    V N +T   +L 
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISL-GLVPNSYTFPFLLK 111

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           A +  +  R G++IHG++++ G D D  V ++L  MY K G   +AR++FD+   RDVVS
Sbjct: 112 ACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVS 171

Query: 228 -------------------------------WTAMIGRYFQEGRREEGFALFSELIKSGI 256
                                          W A+I  Y + G  +E   LF E++K+ +
Sbjct: 172 YTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNV 231

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  T   VL+ACA  A+ ELG+QVH ++   G+       +AL+ +Y KCG VE +  
Sbjct: 232 KPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASG 291

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F G+   D++SW +LI GY    +  +AL  F+ +L+SG  P+ +  + +L AC H G 
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGA 351

Query: 377 VDKGLQYFHSIKEKH--GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           +D G ++ H   +K   G++  +     ++D+ A+ G    A+ V   M +      W +
Sbjct: 352 IDIG-RWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNA 409

Query: 435 LLGGCRIHGNLDLA 448
           ++ G  +HG  + A
Sbjct: 410 MIFGFAMHGRANPA 423



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 46/344 (13%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL---SDMYGKCGSINEARQIFDKM 220
           S+L     +Q LR+   IH  +++TG  +     S L   S +      +  A  +FD +
Sbjct: 7   SLLHNCKTLQSLRI---IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            + +++ W  M   +           L+  +I  G+ PN++TF  +L ACA   A   G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+HG++ ++G D   +  ++L+ MY K G  E+++KVF+     D+VS+T+LI GYA NG
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183

Query: 341 -----------MPDK--------------------ALEYFELLLKSGTQPDHIVFVGVLT 369
                      +P K                    ALE F+ ++K+  +PD    V VL+
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC  +  ++ G Q  HS  + HG          ++DL  + G    A  +   +  K D 
Sbjct: 244 ACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-DV 301

Query: 430 FLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
             W +L+GG   + +++L K A     E L   E  N  T +++
Sbjct: 302 ISWNTLIGG---YTHMNLYKEALLLFQEMLRSGESPNEVTMLSI 342


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 281/455 (61%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A  EG+++H H+   G+   +++   L+ MY + G + DA+ +
Sbjct: 101 PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV 160

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+   RDV SY  +I+G+   G +  A+ +FDE+P +D  SW AMISGY       EAL
Sbjct: 161 FDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEAL 220

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ SV+SA +    + LG+++H +I   GF S+  + +AL D+
Sbjct: 221 ELFKEMMK-TNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 279

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ +  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 280 YIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTM 339

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A E+G+ +H Y+ +   G    S   ++L+ MY+KCG++E +++VF+ +
Sbjct: 340 LSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI 399

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  + A + F  + K+  +PD I FVG+L+AC+H+G++D G 
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+KE + +T   +HY C++DLL  SG F EAE++I+ M M+PD  +W SLL  C++
Sbjct: 460 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 519

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + N++L +  A+ L +IEP+NP +YV ++NIYA+A
Sbjct: 520 YANVELGESYAQNLIKIEPKNPGSYVLLSNIYATA 554



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 40/330 (12%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL++  ++      P  S   S++  C Q+ ++E G++VHS +   GF   + I N L
Sbjct: 217 KEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNAL 276

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +D+Y KCG +  A  LF+ +  +DV S+NT+I G+T     ++A  LF EM +       
Sbjct: 277 IDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR------- 329

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         N  T+ S+L A + +  + +G+ IH YI +
Sbjct: 330 -------------------------SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK 364

Query: 188 --TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              G  +     ++L DMY KCG I  A+Q+FD +++R + SW AMI  +   GR    F
Sbjct: 365 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 424

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHM 304
            +FS + K+ I P+  TF G+L+AC+     +LG+ +   M       P       ++ +
Sbjct: 425 DIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL 484

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLI 333
               G  + ++++ N M   PD V W SL+
Sbjct: 485 LGHSGLFKEAEEMINTMEMEPDGVIWCSLL 514



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 46/344 (13%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD---MYGKCGSINEARQIFDKM 220
           S+L     +Q LR+   IH  +++TG  +     S L +   +      +  A  +F+ +
Sbjct: 7   SLLHNCKTLQSLRM---IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            + +++ W  M   +           L+  +I  G+ PN +TF  +L +CA   A   G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQ 123

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG-------------------- 320
           Q+HG++ ++GYD   +  ++L+ MY + G +E+++KVF+                     
Sbjct: 124 QIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 183

Query: 321 -----------MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
                      +P  D+VSW ++I+GYA+ G   +ALE F+ ++K+  +PD    V V++
Sbjct: 184 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 243

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC  +  ++ G Q  HS  + HG          ++DL  + G    A  +   +  K D 
Sbjct: 244 ACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DV 301

Query: 430 FLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
             W +L+GG   + +++L K A     E L   E  N  T +++
Sbjct: 302 ISWNTLIGG---YTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 342



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 14/201 (6%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVH---MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           + +H  M + G    ++A S L+    +      +  +  VF  +  P+L+ W ++  G+
Sbjct: 19  RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTY 395
           A +  P  AL  +  ++  G  P+   F  +L +C  +    +G Q + H +K    L Y
Sbjct: 79  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLK----LGY 134

Query: 396 TADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
             D Y    ++ +  ++GR  +A  V  +   + D   + +L+ G    G +  A++  +
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTALITGYASKGYIASAQKMFD 193

Query: 454 ALFEIEPENPATYVTMANIYA 474
              EI  ++  ++  M + YA
Sbjct: 194 ---EIPIKDVVSWNAMISGYA 211


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/510 (35%), Positives = 303/510 (59%), Gaps = 40/510 (7%)

Query: 5   LCNQRRLKEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK- 58
           L +Q +L +A+  L  +S      PS ++ + L+Q C   ++L+ GK VH HLK +G K 
Sbjct: 25  LSSQGQLFQAISSLGLLSRNGIRLPSKTL-AYLLQQCANTKSLKLGKWVHLHLKVTGLKR 83

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P  F++N L++MY+KCG+   A  +FDEM  R++ S+N M+SG+ K G ++ AR LFD+M
Sbjct: 84  PNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKM 143

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P++D  SW  M+  Y +     +AL  YR ++       N+++ + +L+    ++ L L 
Sbjct: 144 PEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGY-NEYSFAGLLNICVKVKELELS 202

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K+ HG ++  GF S+ V+ S++ D Y KC  + +AR++FD+M+ RDV++WT M+  Y Q 
Sbjct: 203 KQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQW 262

Query: 239 GRREE---------------------GFA----------LFSELIKSGIRPNAFTFAGVL 267
           G  E                      G+A          LF++++   IRP+ FTF+  L
Sbjct: 263 GDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCL 322

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDL 326
            A A  A+   GKQ+HGY+ R    P +   S+L+ MYSKCG +E  + VF+ M  + D+
Sbjct: 323 CASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDV 382

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V W ++I+  AQ+G   +A++ F+ +++ G +PD I  + +L AC+H+GLV +GL+ + S
Sbjct: 383 VLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYES 442

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           I   HG+    +HYAC++DLL R+G F    + + KMP KP+  +W +LLG CR+HGN++
Sbjct: 443 ITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIE 502

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
             +  AE + E++P++ A YV +++I+A+ 
Sbjct: 503 FGREVAEKIIELDPQSSAAYVLLSSIHAAV 532


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 187/466 (40%), Positives = 285/466 (61%), Gaps = 21/466 (4%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           +++  C   +A+ + K+VH +   +G    VF+ N L+D YAKCG + +A  +F+ M+ +
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLY 146
           DV S+N M++G+++ G+ + A  LF  M +     D  +WTA+I+GY +     EAL+++
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----------GFDSDEVV 196
           R M  F  S+ N  T+ SVLSA +++     G EIH Y ++           G D D +V
Sbjct: 245 RQMI-FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMV 303

Query: 197 WSALSDMYGKCGSINEARQIFDK--MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           ++AL DMY KC S   AR IFD   + +R+VV+WT MIG + Q G   +   LF E+I  
Sbjct: 304 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 363

Query: 255 --GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYS-FAASALVHMYSKCGN 310
             G+ PNA+T + +L ACA  AA  +GKQ+H Y+ R   YD  + F A+ L++MYSKCG+
Sbjct: 364 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGD 423

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           V+ ++ VF+ M +   +SWTS++ GY  +G   +AL+ F+ + K+G  PD I F+ VL A
Sbjct: 424 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 483

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H G+VD+GL YF S+   +GLT  A+HYA  +DLLAR GR  +A   +  MPM+P   
Sbjct: 484 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 543

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +W +LL  CR+H N++LA+ A   L E+  EN  +Y  ++NIYA+A
Sbjct: 544 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 589



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 217/494 (43%), Gaps = 96/494 (19%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +++ C +  +   G   H  +  +GF+  VFI N L+ MY++CG                
Sbjct: 16  VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG---------------- 59

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRM 148
                          SLE+A  +FDE+ QR   D  SW +++S +V+ +    ALDL+  
Sbjct: 60  ---------------SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK 104

Query: 149 M-----QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           M     +   N  S+  ++ ++L A  +++ +   KE+HG  +R G   D  V +AL D 
Sbjct: 105 MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDA 164

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG------------RRE--------- 242
           Y KCG +  A ++F+ M  +DVVSW AM+  Y Q G            R+E         
Sbjct: 165 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 224

Query: 243 --------------EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
                         E   +F ++I SG  PN  T   VL+ACA   A   G ++H Y  +
Sbjct: 225 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 284

Query: 289 I----------GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP--RPDLVSWTSLIAGY 336
                      G D      +AL+ MYSKC + + ++ +F+ +P    ++V+WT +I G+
Sbjct: 285 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 344

Query: 337 AQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           AQ G  + AL+ F  ++    G  P+      +L AC H   +  G Q    +   H   
Sbjct: 345 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD 404

Query: 395 YTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
            +A   A C++++ ++ G    A  V   M  K     W S++ G  +HG      R +E
Sbjct: 405 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG------RGSE 457

Query: 454 ALFEIEPENPATYV 467
           AL   +    A +V
Sbjct: 458 ALDIFDKMRKAGFV 471



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 168/376 (44%), Gaps = 59/376 (15%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + FTL  VL A   +   R G   HG I   GF+S+  + +AL  MY +CGS+ EA  IF
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 218 DKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELI------KSGIRPNAFTFAGVLN 268
           D++  R   DV+SW +++  + +         LFS++        +  R +  +   +L 
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 128

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC    A    K+VHG   R G     F  +AL+  Y+KCG +EN+ KVFN M   D+VS
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 188

Query: 329 WTSLIAGYAQNG----------------MP-------------------DKALEYFELLL 353
           W +++AGY+Q+G                +P                    +AL  F  ++
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-----------YAC 402
            SG+ P+ +  + VL+AC   G   +G++  H+   K+ L  T D+           Y  
Sbjct: 249 FSGSLPNCVTIISVLSACASLGAFSQGME-IHAYSLKNCL-LTLDNDFGGEDEDLMVYNA 306

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLGGCRIHGNL-DLAKRAAEALFEIEP 460
           ++D+ ++   F  A  +   +P++    + W  ++GG   +G+  D  K   E + E   
Sbjct: 307 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 366

Query: 461 ENPATYVTMANIYASA 476
             P  Y     + A A
Sbjct: 367 VAPNAYTISCILMACA 382



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 27/240 (11%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           ++++G R + FT   VL AC +  +   G   HG +   G++   F  +ALV MYS+CG+
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 311 VENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLL------KSGTQPDH 361
           +E +  +F+ + +    D++SW S+++ + ++     AL+ F  +        +  + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHE 415
           I  V +L AC         L+     KE HG       +        ++D  A+ G    
Sbjct: 121 ISIVNILPAC-------GSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 173

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYA 474
           A  V + M  K D   W +++ G    GN    K A E    +  EN P   VT   + A
Sbjct: 174 AVKVFNMMEFK-DVVSWNAMVAGYSQSGNF---KAAFELFKNMRKENIPLDMVTWTAVIA 229



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 70/114 (61%), Gaps = 8/114 (7%)

Query: 13  EALQI-LHQISHP---SPSIY--SSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGV-FIS 64
           +AL++ +  IS P   +P+ Y  S ++  C    A+  GK++H++ L+   +     F++
Sbjct: 352 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVA 411

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           NCL++MY+KCG++  A+ +FD M ++   S+ +M++G+   G   +A ++FD+M
Sbjct: 412 NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 465


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 184/507 (36%), Positives = 299/507 (58%), Gaps = 38/507 (7%)

Query: 5   LCNQRRLKEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-P 59
           L +Q RL EAL  L +++         I+  L++ C + +  + GK VH HLK +GFK P
Sbjct: 37  LSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRP 96

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
              ++N L+ MY +CG   +A+ +FD+M  R++ S+N M++G+ K G +  AR LFD M 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           ++D  SW  ++  Y +     EA+ LYR  +  +    N F+ + VL     ++ L+L K
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGF-NAFSFAGVLILCVKLKELQLAK 215

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-------------- 225
           ++HG ++  GF S+ V+ S++ D Y KCG +  AR +FD+M+ +D+              
Sbjct: 216 QVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWG 275

Query: 226 -----------------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
                            VSW+A+I  Y +     E    F++++K GI P  +TF+  L 
Sbjct: 276 DMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLC 335

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLV 327
           ACA  AA + GKQVHGY+ R  +   +   S+L+ MYSKCG +E S  VF+ M  + D+V
Sbjct: 336 ACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVV 395

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            W ++I+  AQNG  +KA++ F  +++SG +PD I F+ +L+AC+H+GLV +GL++F ++
Sbjct: 396 VWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAM 455

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
              HG+    +HYAC++DLL R+G F E  + +  M  KPD  +W++LLG CRIH N++L
Sbjct: 456 TYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIEL 515

Query: 448 AKRAAEALFEIEPENPATYVTMANIYA 474
            ++ AE + E++P++ A YV++A++YA
Sbjct: 516 GRKVAERVIELKPQSSAAYVSLASLYA 542


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 182/468 (38%), Positives = 283/468 (60%), Gaps = 17/468 (3%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +KEA +I  ++   +   ++ ++    QN  +E+ ++    L  S     +   NC++  
Sbjct: 158 VKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARR----LFESKADWELISWNCMMGG 213

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y K   + DA+ +FD M ERD  S+NTMISG+ + G L +A+ LF+E P RD F+WTAM+
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 273

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL--GKEIHGYIMRT 188
           SGYV+     EA  ++  M   +NSVS    ++        +QC R+   +E+   +   
Sbjct: 274 SGYVQNGMLDEARRVFDGMPE-KNSVSWNAIIAGY------VQCKRMDQARELFEAMPCQ 326

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
              S    W+ +   Y + G I +AR  FD+M  RD +SW A+I  Y Q G  EE   LF
Sbjct: 327 NVSS----WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 382

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            E+ + G R N  TF   L+ CA+ AA ELGKQVHG + + G +   +  +AL+ MY KC
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 442

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GN++++  VF G+   ++VSW ++IAGYA++G   +AL  FE + K+G  PD +  VGVL
Sbjct: 443 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 502

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+H GLVDKG +YF+S+ + +G+T  + HY C++DLL R+GR  +A++++  MP +PD
Sbjct: 503 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPD 562

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              W +LLG  RIHGN +L ++AA+ +FE+EP+N   YV ++N+YA++
Sbjct: 563 AATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAAS 610



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 158/350 (45%), Gaps = 42/350 (12%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N  +  + + G    A  LF+ M  R   S+N MISG         AR LF++MP RD  
Sbjct: 53  NIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLV 112

Query: 125 SWTAMISGYVRYNQPIEALDLYRMM----------------QNF----------ENSVSN 158
           SW  MISG VRY     A  L+  M                QN           E    N
Sbjct: 113 SWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN 172

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
             + + +L+A   +Q  R+  E    +  +  D + + W+ +   Y K   + +AR IFD
Sbjct: 173 SISWNGMLAAY--VQNGRI--EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFD 228

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M +RD VSW  MI  Y Q G   E   LF E   S +R + FT+  +++    +   + 
Sbjct: 229 RMPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDE 284

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            ++V   M     +  S + +A++  Y +C  ++ ++++F  MP  ++ SW ++I GYAQ
Sbjct: 285 ARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQ 340

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           NG   +A  +F+ +     Q D I +  ++     +G  ++ L  F  +K
Sbjct: 341 NGDIAQARNFFDRM----PQRDSISWAAIIAGYAQSGYGEEALHLFVEMK 386



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 169/386 (43%), Gaps = 44/386 (11%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+  +N  I+   + G  + A  LF+ MP+R + SW AMISG +  ++   A  L+  M 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM- 106

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                  +  + + ++S     + LR  + +   +     + D V W+A+   Y + G +
Sbjct: 107 ----PTRDLVSWNVMISGCVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYV 158

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS-----ELIKSG------IRPN 259
            EA++IFD+M  ++ +SW  M+  Y Q GR E+   LF      ELI         ++ N
Sbjct: 159 KEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRN 218

Query: 260 AFTFA-GVLNACADHAAEELGKQVHGYMTR---------IGYDPYS--FAASALVHMYSK 307
               A G+ +   +         + GY                P    F  +A+V  Y +
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQ 278

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G ++ +++VF+GMP  + VSW ++IAGY Q    D+A E FE +           +  +
Sbjct: 279 NGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS----WNTM 334

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           +T     G + +   +F  + ++  +++ A     I+   A+SG   EA  +  +M    
Sbjct: 335 ITGYAQNGDIAQARNFFDRMPQRDSISWAA-----IIAGYAQSGYGEEALHLFVEMKRDG 389

Query: 428 DKF---LWASLLGGCRIHGNLDLAKR 450
           ++     + S L  C     L+L K+
Sbjct: 390 ERLNRSTFTSTLSTCAEIAALELGKQ 415



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 122/269 (45%), Gaps = 23/269 (8%)

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           K  + N+ +       D D+V W   I  + + G+ +    LF+ +     R ++ ++  
Sbjct: 30  KPSTRNQPKTTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSM----PRRSSISWNA 85

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +++ C  +    L +Q+   M       ++   S  V    +  N+  ++ +F+ MP  D
Sbjct: 86  MISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCV----RYRNLRAARLLFDQMPERD 141

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++++GYAQNG   +A E F+ +       + I + G+L A    G ++   + F 
Sbjct: 142 VVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLAAYVQNGRIEDARRLFE 197

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           S  +   +++      C++    +  R  +A  +  +MP + D+  W +++ G   +G L
Sbjct: 198 SKADWELISWN-----CMMGGYVKRNRLVDARGIFDRMPER-DEVSWNTMISGYAQNGEL 251

Query: 446 DLAKRAAEALFEIEP-ENPATYVTMANIY 473
             A+R    LFE  P  +  T+  M + Y
Sbjct: 252 LEAQR----LFEESPVRDVFTWTAMVSGY 276


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 276/455 (60%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C ++ A +EG+++H  +   GF   ++I   L+ MY + G + DAQ +
Sbjct: 101 PNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKV 160

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            D+   RDV SY  +I+G+   G +E A  +FDE+P +D  SW A ISGY       EAL
Sbjct: 161 XDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEAL 220

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +VLSA +    + LG+++H +I   GF  +  + +AL D+
Sbjct: 221 ELFKKMMK-TNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDL 279

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F  + ++DV+SW  +IG Y      +E   LF ++++SG +PN  T 
Sbjct: 280 YSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTM 339

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L+ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E +++VF+ M
Sbjct: 340 LSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM 399

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  + A + F  + K+G +PD I FVG+L+AC+H+G++D G 
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+   + L    +HY C++DL   SG F EAE +I+ M M+PD  +W SLL  C++
Sbjct: 460 HIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKM 519

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L +  A+ L +IEPENP +YV ++NIYA+A
Sbjct: 520 HGNVELGESYAQNLIKIEPENPGSYVLLSNIYATA 554



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 185/374 (49%), Gaps = 36/374 (9%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L  A ++FD + +     W  M  G+   + P+ AL LY  M +    + N +T   +L 
Sbjct: 53  LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSL-GLLPNSYTFPFLLK 111

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFD-------------------------------SDEVV 196
           + +     + G+++HG +++ GFD                                D V 
Sbjct: 112 SCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVS 171

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
           ++AL   Y   G I  A ++FD++  +DVVSW A I  Y + G  +E   LF +++K+ +
Sbjct: 172 YTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNV 231

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           RP+  T   VL+ACA   + ELG+QVH ++   G+       +AL+ +YSKCG +E +  
Sbjct: 232 RPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACG 291

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F G+   D++SW +LI GY    +  +AL  F+ +L+SG +P+ +  + +L+AC H G 
Sbjct: 292 LFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGA 351

Query: 377 VDKGLQYFHSIKEKH--GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           +D G ++ H   +K   G+T  +     ++D+ A+ G    A+ V   M +      W +
Sbjct: 352 IDIG-RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNA 409

Query: 435 LLGGCRIHGNLDLA 448
           ++ G  +HG  + A
Sbjct: 410 MIFGFAMHGRANAA 423



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 149/325 (45%), Gaps = 48/325 (14%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC------GSINEARQIF 217
           S+L     +Q LR+   IH  +++TG  +      ALS +   C        +  A  +F
Sbjct: 7   SLLHXCKTLQSLRI---IHAQMIKTGLHNTNY---ALSKLLEXCVLSPHFDGLPYAISVF 60

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D + +  ++ W  M   +           L+  ++  G+ PN++TF  +L +CA   A +
Sbjct: 61  DTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFK 120

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+Q+HG + + G+D   +  ++L+ MY + G +E+++KV +     D+VS+T+LI GYA
Sbjct: 121 EGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYA 180

Query: 338 QNG-----------MPDK--------------------ALEYFELLLKSGTQPDHIVFVG 366
             G           +P K                    ALE F+ ++K+  +PD    V 
Sbjct: 181 SRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVT 240

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC  +G ++ G Q  HS    HG          ++DL ++ G    A  +   +  K
Sbjct: 241 VLSACAQSGSIELGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNK 299

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRA 451
            D   W +L+GG   + +++L K A
Sbjct: 300 -DVISWNTLIGG---YTHMNLYKEA 320


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  354 bits (908), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 187/466 (40%), Positives = 285/466 (61%), Gaps = 21/466 (4%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           +++  C   +A+ + K+VH +   +G    VF+ N L+D YAKCG + +A  +F+ M+ +
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLY 146
           DV S+N M++G+++ G+ + A  LF  M +     D  +WTA+I+GY +     EAL+++
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----------GFDSDEVV 196
           R M  F  S+ N  T+ SVLSA +++     G EIH Y ++           G D D +V
Sbjct: 352 RQMI-FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMV 410

Query: 197 WSALSDMYGKCGSINEARQIFDK--MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           ++AL DMY KC S   AR IFD   + +R+VV+WT MIG + Q G   +   LF E+I  
Sbjct: 411 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 470

Query: 255 --GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYS-FAASALVHMYSKCGN 310
             G+ PNA+T + +L ACA  AA  +GKQ+H Y+ R   YD  + F A+ L++MYSKCG+
Sbjct: 471 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGD 530

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           V+ ++ VF+ M +   +SWTS++ GY  +G   +AL+ F+ + K+G  PD I F+ VL A
Sbjct: 531 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 590

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H G+VD+GL YF S+   +GLT  A+HYA  +DLLAR GR  +A   +  MPM+P   
Sbjct: 591 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 650

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +W +LL  CR+H N++LA+ A   L E+  EN  +Y  ++NIYA+A
Sbjct: 651 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 696



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 217/494 (43%), Gaps = 96/494 (19%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +++ C +  +   G   H  +  +GF+  VFI N L+ MY++CG                
Sbjct: 123 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG---------------- 166

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRM 148
                          SLE+A  +FDE+ QR   D  SW +++S +V+ +    ALDL+  
Sbjct: 167 ---------------SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK 211

Query: 149 M-----QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           M     +   N  S+  ++ ++L A  +++ +   KE+HG  +R G   D  V +AL D 
Sbjct: 212 MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDA 271

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG------------RRE--------- 242
           Y KCG +  A ++F+ M  +DVVSW AM+  Y Q G            R+E         
Sbjct: 272 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 331

Query: 243 --------------EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
                         E   +F ++I SG  PN  T   VL+ACA   A   G ++H Y  +
Sbjct: 332 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 391

Query: 289 I----------GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP--RPDLVSWTSLIAGY 336
                      G D      +AL+ MYSKC + + ++ +F+ +P    ++V+WT +I G+
Sbjct: 392 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 451

Query: 337 AQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           AQ G  + AL+ F  ++    G  P+      +L AC H   +  G Q    +   H   
Sbjct: 452 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD 511

Query: 395 YTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
            +A   A C++++ ++ G    A  V   M  K     W S++ G  +HG      R +E
Sbjct: 512 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG------RGSE 564

Query: 454 ALFEIEPENPATYV 467
           AL   +    A +V
Sbjct: 565 ALDIFDKMRKAGFV 578



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 195/437 (44%), Gaps = 62/437 (14%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSV 156
           +++ +   G+ + A  + + +       W  +I  +++  +   A+++  RM++    + 
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR--AGTR 114

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            + FTL  VL A   +   R G   HG I   GF+S+  + +AL  MY +CGS+ EA  I
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 217 FDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELI------KSGIRPNAFTFAGVL 267
           FD++  R   DV+SW +++  + +         LFS++        +  R +  +   +L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC    A    K+VHG   R G     F  +AL+  Y+KCG +EN+ KVFN M   D+V
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 294

Query: 328 SWTSLIAGYAQNG----------------MP-------------------DKALEYFELL 352
           SW +++AGY+Q+G                +P                    +AL  F  +
Sbjct: 295 SWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-----------YA 401
           + SG+ P+ +  + VL+AC   G   +G++  H+   K+ L  T D+           Y 
Sbjct: 355 IFSGSLPNCVTIISVLSACASLGAFSQGME-IHAYSLKNCL-LTLDNDFGGEDEDLMVYN 412

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLGGCRIHGNL-DLAKRAAEALFEIE 459
            ++D+ ++   F  A  +   +P++    + W  ++GG   +G+  D  K   E + E  
Sbjct: 413 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 472

Query: 460 PENPATYVTMANIYASA 476
              P  Y     + A A
Sbjct: 473 GVAPNAYTISCILMACA 489



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 16/119 (13%)

Query: 12  KEALQI-LHQISHP---SPSIY--SSLIQFCRQNRALEEGKKVHSHL------KSSGFKP 59
            +AL++ +  IS P   +P+ Y  S ++  C    A+  GK++H+++       SS +  
Sbjct: 458 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAY-- 515

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
             F++NCL++MY+KCG++  A+ +FD M ++   S+ +M++G+   G   +A ++FD+M
Sbjct: 516 --FVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 572



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 11/182 (6%)

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + +V  Y  CG  + +  V   +     V W  LI  + + G  D A+     +L++GT+
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEA 416
            DH     VL AC        G   FH +   +G  + ++ + C  +V + +R G   EA
Sbjct: 115 LDHFTLPHVLKACGELPSYRCG-SAFHGLICCNG--FESNVFICNALVAMYSRCGSLEEA 171

Query: 417 EDVISKMPMK--PDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYVTMA 470
             +  ++  +   D   W S++       N    LDL  +    + E      +  +++ 
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 471 NI 472
           NI
Sbjct: 232 NI 233


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 182/470 (38%), Positives = 284/470 (60%), Gaps = 21/470 (4%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +KEA +I  ++   +   ++ ++    QN  +E+ ++    L  S     +   NC++  
Sbjct: 77  VKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARR----LFESKADWELISWNCMMGG 132

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y K   + DA+ +FD M ERD  S+NTMISG+ + G L +A+ LF+E P RD F+WTAM+
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SGYV+     EA  ++  M   +NSVS    ++        +QC R+ +       R  F
Sbjct: 193 SGYVQNGMLDEARRVFDGMPE-KNSVSWNAIIAGY------VQCKRMDQA------RELF 239

Query: 191 DS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           ++    +   W+ +   Y + G I +AR  FD+M  RD +SW A+I  Y Q G  EE   
Sbjct: 240 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 299

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF E+ + G R N  TF   L+ CA+ AA ELGKQVHG + + G +   +  +AL+ MY 
Sbjct: 300 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 359

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCGN++++  VF G+   ++VSW ++IAGYA++G   +AL  FE + K+G  PD +  VG
Sbjct: 360 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 419

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLVDKG +YF+S+ + +G+T  + HY C++DLL R+GR  +A++++  MP +
Sbjct: 420 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 479

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD   W +LLG  RIHGN +L ++AA+ +FE+EP+N   YV ++N+YA++
Sbjct: 480 PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAAS 529



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 145/290 (50%), Gaps = 21/290 (7%)

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           + G  +  +L  AR LFD+MP+RD  SW AM+SGY +     EA +++  M        N
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-----PCKN 91

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
             + + +L+A   +Q  R+  E    +  +  D + + W+ +   Y K   + +AR IFD
Sbjct: 92  SISWNGMLAAY--VQNGRI--EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFD 147

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M +RD VSW  MI  Y Q G   E   LF E   S +R + FT+  +++    +   + 
Sbjct: 148 RMPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDE 203

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            ++V   M     +  S + +A++  Y +C  ++ ++++F  MP  ++ SW ++I GYAQ
Sbjct: 204 ARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQ 259

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           NG   +A  +F+ +     Q D I +  ++     +G  ++ L  F  +K
Sbjct: 260 NGDIAQARNFFDRM----PQRDSISWAAIIAGYAQSGYGEEALHLFVEMK 305


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 299/507 (58%), Gaps = 38/507 (7%)

Query: 5   LCNQRRLKEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-P 59
           L +Q RL EAL  L +++         I+  L++ C + +  + GK VH HLK +GFK P
Sbjct: 37  LSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRP 96

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
              ++N L+ MY +CG   +A+ +FD+M  R++ S+N M++G+ K G +  AR LFD M 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           ++D  SW  ++  Y +     EA+ LYR  +  +    N F+ + VL     ++ L+L K
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGF-NAFSFAGVLILCVKLKELQLAK 215

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-------------- 225
           ++HG ++  GF S+ V+ S++ D Y KCG +  AR +FD+M+ +D+              
Sbjct: 216 QVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWG 275

Query: 226 -----------------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
                            VSW+A+I  Y +     E    F++++K GI P  +TF+  L 
Sbjct: 276 DMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLC 335

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLV 327
           ACA  AA + GKQVHGY+ R  +   +   S+L+ MYSKCG +E S  VF+ M  + D+V
Sbjct: 336 ACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVV 395

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            W ++I+  AQNG  +KA++ F  +++SG +PD I F+ +L+AC+H+GLV +GL++F ++
Sbjct: 396 VWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAM 455

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
              HG+    +HY+C++DLL R+G F E  + +  M  KPD  +W++LLG CRIH N++L
Sbjct: 456 TYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIEL 515

Query: 448 AKRAAEALFEIEPENPATYVTMANIYA 474
            ++ AE + E++P++ A YV++A++YA
Sbjct: 516 GRKVAERVIELKPQSSAAYVSLASLYA 542


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/470 (37%), Positives = 279/470 (59%), Gaps = 21/470 (4%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + +A  +  ++   +   +++L+    QN  +EE       L  S     +   NCLL  
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEA----CMLFKSRENWALVSWNCLLGG 228

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           + K   I +A+  FD M  RDV S+NT+I+G+ + G +++AR LFDE P +D F+WTAM+
Sbjct: 229 FVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMV 288

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SGY++     EA +L+  M        N+ + +++L+     + + + KE+        F
Sbjct: 289 SGYIQNRMVEEARELFDKMPE-----RNEVSWNAMLAGYVQGERMEMAKEL--------F 335

Query: 191 D----SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           D     +   W+ +   Y +CG I+EA+ +FDKM  RD VSW AMI  Y Q G   E   
Sbjct: 336 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++ + G R N  +F+  L+ CAD  A ELGKQ+HG + + GY+   F  +AL+ MY 
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E +  +F  M   D+VSW ++IAGY+++G  + AL +FE + + G +PD    V 
Sbjct: 456 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLVDKG QYF+++ + +G+   + HYAC+VDLL R+G   +A +++  MP +
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LLG  R+HGN +LA+ AA+ +F +EPEN   YV ++N+YAS+
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 625



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 222/452 (49%), Gaps = 35/452 (7%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R  EAL++  ++   S   Y+ +I    +N   E  +K+   +     +  +   N ++ 
Sbjct: 79  RCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP----ERDLVSWNVMIK 134

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y +  N+  A+ LF+ M ERDVCS+NTM+SG+ + G ++ AR++FD MP++++ SW A+
Sbjct: 135 GYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG--KEIHGYIMR 187
           +S YV+ ++  EA  L++  +N+               A+ +  CL  G  K+      R
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENW---------------ALVSWNCLLGGFVKKKKIVEAR 239

Query: 188 TGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
             FDS    D V W+ +   Y + G I+EARQ+FD+   +DV +WTAM+  Y Q    EE
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEE 299

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF ++ +     N  ++  +L         E+ K++   M       +    + ++ 
Sbjct: 300 ARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW----NTMIT 351

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            Y++CG +  +K +F+ MP+ D VSW ++IAGY+Q+G   +AL  F  + + G + +   
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F   L+ C     ++ G Q  H    K G          ++ +  + G   EA D+  +M
Sbjct: 412 FSSALSTCADVVALELGKQ-LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 470

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             K D   W +++ G   HG  ++A R  E++
Sbjct: 471 AGK-DIVSWNTMIAGYSRHGFGEVALRFFESM 501



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 163/348 (46%), Gaps = 27/348 (7%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+  +N  IS + + G   +A  +F  MP+  + S+  MISGY+R  +       + + +
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGE-------FELAR 115

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
              + +  +  +S  +     ++   LGK    + +    + D   W+ +   Y + G +
Sbjct: 116 KLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERDVCSWNTMLSGYAQNGCV 173

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++AR +FD+M +++ VSW A++  Y Q  + EE   LF    KS       ++  +L   
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF----KSRENWALVSWNCLLGGF 229

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
                    +Q    M     D  S+  + ++  Y++ G ++ ++++F+  P  D+ +WT
Sbjct: 230 VKKKKIVEARQFFDSMNV--RDVVSW--NTIITGYAQSGKIDEARQLFDESPVQDVFTWT 285

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++++GY QN M ++A E F+ +     + + + +  +L        ++   + F  +  +
Sbjct: 286 AMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR 341

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +  T+       ++   A+ G+  EA+++  KMP K D   WA+++ G
Sbjct: 342 NVSTWNT-----MITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 131/312 (41%), Gaps = 46/312 (14%)

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
           DSD   W+     Y + G  NEA ++F +M     VS+  MI  Y + G  E    LF E
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + +  +        G +          LGK    +      D  S+  + ++  Y++ G 
Sbjct: 121 MPERDLVSWNVMIKGYVR------NRNLGKARELFEIMPERDVCSW--NTMLSGYAQNGC 172

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE-----------LLLKSGTQP 359
           V++++ VF+ MP  + VSW +L++ Y QN   ++A   F+            LL    + 
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232

Query: 360 DHIV----------------FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
             IV                +  ++T    +G +D+  Q F     +   T+TA     +
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA-----M 287

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-EN 462
           V    ++    EA ++  KMP + ++  W ++L G      +++AK     LF++ P  N
Sbjct: 288 VSGYIQNRMVEEARELFDKMPER-NEVSWNAMLAGYVQGERMEMAKE----LFDVMPCRN 342

Query: 463 PATYVTMANIYA 474
            +T+ TM   YA
Sbjct: 343 VSTWNTMITGYA 354


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 176/459 (38%), Positives = 277/459 (60%), Gaps = 7/459 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A EEG+++H+ +   G     ++   L+ MYA+ G + DA+ +
Sbjct: 62  PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV 121

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV S   +I+G+   G    AR +FDE+ +RD  SW AMI+GYV   +  EAL
Sbjct: 122 FDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEAL 181

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----GFDSDEVVWSA 199
           +L++ M    N   ++ TL SV+SA +    + LG+++H ++       GF S   + +A
Sbjct: 182 ELFKEMMR-TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNA 240

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L D+Y KCG +  A  +F+ +  +DVVSW  +IG Y      +E   LF E+++SG  PN
Sbjct: 241 LIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPN 300

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGNVENSKKV 317
             T   VL ACA   A ++G+ +H Y+ +   G    +   ++L+ MY+KCG++E + +V
Sbjct: 301 DVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQV 360

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           FN M    L SW ++I G+A +G  + A + F  +  +  +PD I FVG+L+AC+H+GL+
Sbjct: 361 FNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLL 420

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           D G Q F S+ + + LT   +HY C++DLL  SG F EAE++I  MPM+PD  +W SLL 
Sbjct: 421 DLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLK 480

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            C+ HGNL+LA+  A+ L +IEPEN  +YV ++NIYA+A
Sbjct: 481 ACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATA 519



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 192/406 (47%), Gaps = 71/406 (17%)

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A ++F+ +QE ++  +NT                               M+ G+   + P
Sbjct: 17  AISVFETIQEPNLLIWNT-------------------------------MLRGHASSSDP 45

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           + AL++Y  M +    + N ++   +L + +  +    G++IH  +++ G   D  V ++
Sbjct: 46  VSALEMYVRMVSL-GHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTS 104

Query: 200 LSDMYGKCGSINE-------------------------------ARQIFDKMVDRDVVSW 228
           L  MY + G + +                               AR++FD++ +RDVVSW
Sbjct: 105 LISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSW 164

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
            AMI  Y + GR EE   LF E++++ +RP+  T   V++ACA   + ELG+QVH ++  
Sbjct: 165 NAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDD 224

Query: 289 I----GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
                G+       +AL+ +YSKCG+VE +  +F G+   D+VSW +LI GY    +  +
Sbjct: 225 DDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKE 284

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK--HGLTYTADHYAC 402
           AL  F+ +L+SG  P+ +  + VL AC H G +D G ++ H   +K   G+T        
Sbjct: 285 ALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIG-RWIHVYIDKKLKGVTNETSLRTS 343

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           ++D+ A+ G    A  V + M  +     W +++ G  +HG  + A
Sbjct: 344 LIDMYAKCGDIEAAHQVFNSMLYRSLSS-WNAMIFGFAMHGRANAA 388


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 278/455 (61%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C + +  +EG+++H H+   G++  +++   L+ MY K G   DA  +
Sbjct: 101 PNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKV 160

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  +I+G+   G +E A+ +FDE+P +D  SW A+ISGY       EAL
Sbjct: 161 FDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEAL 220

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL++ M    N   ++ T+ +V+SA +    ++LG+++H +I   G  S+  + +AL D+
Sbjct: 221 DLFKEMMK-TNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDL 279

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F  + ++DV+SW  MIG Y      +E   LF E+++SG  PN  T 
Sbjct: 280 YSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTM 339

Query: 264 AGVLNACADHAAEELGKQVHGYM-TRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A + G+ +H Y+  RI G    S   ++L+ MY+KCG++E + +VFN M
Sbjct: 340 LSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L +  ++I G+A +G  + A + F  + K+G +PD I FVG+L+AC+H+G++D G 
Sbjct: 400 HHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + F S+ + + +T   +HY C++DLL   G F EAE++I+ M M+PD  +W SLL  C++
Sbjct: 460 RIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKM 519

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L +  A+ L +IEPENP +YV ++NIYA+A
Sbjct: 520 HGNVELGESFAQKLIKIEPENPGSYVLLSNIYATA 554



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 161/345 (46%), Gaps = 45/345 (13%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD---MYGKCGSINEARQIFDKM 220
           S+L     +Q LR+   IH  +++TG  +     S L +   +      +  A  +F+ +
Sbjct: 7   SLLHNCKTLQSLRI---IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            + +++ W  M   +           L+  +I  G+ PN++TF  +L +CA     + G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG-------------------- 320
           Q+HG++ ++GY+   +  ++L+ MY K G  +++ KVF+G                    
Sbjct: 124 QIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 321 -----------MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
                      +P  D+VSW ++I+GYA  G   +AL+ F+ ++K+  +PD    V V++
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC  +G +  G Q  HS  + HGL         ++DL ++ G    A  +   +  K D 
Sbjct: 244 ACAQSGSIQLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK-DV 301

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEI--EPENPATYVTMANI 472
             W +++GG   + +L+L K A     E+    ENP   VTM +I
Sbjct: 302 ISWNTMIGG---YTHLNLYKEALLLFQEMLRSGENPND-VTMLSI 342


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 285/501 (56%), Gaps = 44/501 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P   +  S ++ C    AL+  ++VH     SGF    F+ + L+ MY KC 
Sbjct: 104 QMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCN 163

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMIS 131
            I DA  +FD M E DV S++ +++ + + G +++A+ LF EM     Q +  SW  MI+
Sbjct: 164 QIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIA 223

Query: 132 GYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           G+       EA+ ++  M  + FE    +  T+SSVL AV  ++ L +G  IHGY+++ G
Sbjct: 224 GFNHSGLYSEAVLMFLDMHLRGFE---PDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKM----------------------------- 220
             SD+ V SAL DMYGKC   +E  Q+FD+M                             
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340

Query: 221 ------VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
                 ++ +VVSWT+MI    Q GR  E   LF E+  +G++PN+ T   +L AC + A
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIA 400

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A   GK  H +  R G     +  SAL+ MY+KCG ++ S+  F+G+P  +LV W ++IA
Sbjct: 401 ALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIA 460

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GYA +G   +A+E F+L+ +SG +PD I F  VL+AC+ +GL ++G  YF+S+  K+G+ 
Sbjct: 461 GYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIE 520

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              +HYAC+V LL+R+G+  +A  +I +MP+ PD  +W +LL  CR+H N+ L + AAE 
Sbjct: 521 ARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEK 580

Query: 455 LFEIEPENPATYVTMANIYAS 475
           LFE+EP NP  Y+ ++NIYAS
Sbjct: 581 LFELEPSNPGNYILLSNIYAS 601



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 217/511 (42%), Gaps = 113/511 (22%)

Query: 13  EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           +AL +L  + H   +  +S         +L + ++ H+H+  +G      ++  LL  YA
Sbjct: 6   QALALLDSVQHTILNCLNS------TTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYA 59

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG 132
                +DA  + D + E +V S++T+I  F+K      A + F +M  R          G
Sbjct: 60  NNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTR----------G 109

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
            +  N+                       L S + A + +  L+  +++HG    +GFDS
Sbjct: 110 LMPDNR----------------------VLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D  V S+L  MY KC  I +A ++FD+M + DVVSW+A++  Y ++G  +E   LFSE+ 
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 253 KSGIRPNAFTFAG-----------------------------------VLNACADHAAEE 277
            SG++PN  ++ G                                   VL A  D     
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLV 267

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKC----------------------------- 308
           +G  +HGY+ + G       +SAL+ MY KC                             
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327

Query: 309 --GNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
             G VE+S ++F  +       ++VSWTS+IA  +QNG   +ALE F  +  +G +P+ +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSV 387

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               +L AC +   +  G +  H    + G++      + ++D+ A+ GR   +      
Sbjct: 388 TIPCLLPACGNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDG 446

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
           +P K +   W +++ G  +HG    AK A E
Sbjct: 447 IPTK-NLVCWNAVIAGYAMHGK---AKEAME 473


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 182/465 (39%), Positives = 270/465 (58%), Gaps = 3/465 (0%)

Query: 13  EALQILHQISHPSPSIYSSLI-QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           E +  LH+     PS    L+ + C Q+ A  +G + H H    G    VF+   L+D Y
Sbjct: 160 EVVSSLHRRGGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFY 219

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
           AK G++  A   F EM  +D    N +I+G++K G +E+AR LFD MP+R + SW +MI+
Sbjct: 220 AKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIA 279

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
            Y    +  EAL L+  M   E +  N  T+++V S  +    L  G+    +I      
Sbjct: 280 CYAHGGEFREALTLFDQMLR-EGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQ 338

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            + +V +AL +MY KC +I+EAR  FD+M  RDVV+W+ MI  Y Q GR  E   LF  +
Sbjct: 339 -NVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERM 397

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
             +  +PN  T  GVL+ACA   ++ELG+Q+  Y+        S+  SAL+ MY+KCG+V
Sbjct: 398 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHV 457

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
             ++ VFN M +  +V+W S+I G A NG  + A+  +  ++  G QP+ + FV +LTAC
Sbjct: 458 ARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTAC 517

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           THAGLVDKG+ +F  +K+K  ++   +H ACIVDLL +SGR  EA   I  M ++P+  +
Sbjct: 518 THAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVI 577

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W++LL  CR H +++LAK AA  L  +EP N + YV ++NIYA A
Sbjct: 578 WSTLLSACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADA 622


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/493 (38%), Positives = 293/493 (59%), Gaps = 30/493 (6%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQF---CRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
             E   I+H+ +    S   S++     C   +AL + K++HS+   +G     F+ N L
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNAL 300

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DN 123
           +D YAKCG++ DA  +F+ M+ +DV S+N M++G+T+ G    A  LF  M +     D 
Sbjct: 301 IDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDV 360

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W+A+I+GY +     EALD ++ M  +  S  N  T+ S+LSA +++  L  G E H 
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILY-GSEPNSVTIISLLSACASLGALSQGMETHA 419

Query: 184 YIMRTGFDS------------DEVVWSALSDMYGKCGSINEARQIFDKMV--DRDVVSWT 229
           Y ++    S            D VV +AL DMY KC S   AR IF+ +   +R+VV+WT
Sbjct: 420 YSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWT 479

Query: 230 AMIGRYFQEGRREEGFALFSELIKS--GIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
            MIG Y Q G   +   LFSE+I     + PNA+T + +L ACA  ++  +GKQ+H Y+T
Sbjct: 480 VMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVT 539

Query: 288 RIGYDPYS----FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           R  +  Y     F A+ L+ MYSKCG+V+ ++ VF+ MP+ + VSWTS+++GY  +G   
Sbjct: 540 R--HHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGK 597

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +AL+ F+ + K+G  PD I F+ +L AC+H+G+VD+GL YF  ++  +G+  +A HYAC+
Sbjct: 598 EALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACV 657

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +DLLARSGR  +A   I +MPM+P   +W +LL  CR+H N++LA+ A   L  ++ EN 
Sbjct: 658 IDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAEND 717

Query: 464 ATYVTMANIYASA 476
            +Y  ++NIYA+A
Sbjct: 718 GSYTLISNIYATA 730



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 146/529 (27%), Positives = 247/529 (46%), Gaps = 91/529 (17%)

Query: 13  EALQILHQISHPSPSIYSSLIQFCRQNRA-LEEGK-----KVHSHLKSSGFKPGVFISNC 66
           +AL +L ++  PSP+++ +L+      RA +EEG+      V   +  +G KP  F    
Sbjct: 101 DALSVLERVV-PSPAVWWNLLV-----RAHIEEGRLDRAIGVSCRMLRAGTKPDHFT--- 151

Query: 67  LLDMYAKCGNISD--AQTLFDEMQ-----ERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
           L      CG +    + + F  +      E +V   N +++ +++ GSLE A  +FDE+ 
Sbjct: 152 LPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEIT 211

Query: 120 QR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNF-----ENSVSNKFTLSSVLSAVSA 171
           ++   D  SW ++++ +V+ + P  ALDL+  M         N  S+  ++ ++L A ++
Sbjct: 212 RKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACAS 271

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           ++ L   KEIH Y +R G  +D  V +AL D Y KCGS+ +A  +F+ M  +DVVSW AM
Sbjct: 272 LKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAM 331

Query: 232 IGRYFQEGR-----------REEGFAL------------------------FSELIKSGI 256
           +  Y Q G+           R+E   L                        F ++I  G 
Sbjct: 332 VTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGS 391

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTR------------IGYDPYSFAASALVHM 304
            PN+ T   +L+ACA   A   G + H Y  +             G        +AL+ M
Sbjct: 392 EPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDM 451

Query: 305 YSKCGNVENSKKVFNGMPRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLKS--GTQPD 360
           YSKC + + ++ +FN +PR +  +V+WT +I GYAQ G  + AL+ F  ++       P+
Sbjct: 452 YSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPN 511

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAED 418
                 +L AC H   +  G Q  H+   +H    ++ ++   C++D+ ++ G    A +
Sbjct: 512 AYTISCILMACAHLSSLRMGKQ-IHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARN 570

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467
           V   MP K ++  W S++ G  +HG      R  EAL   +    A +V
Sbjct: 571 VFDSMP-KRNEVSWTSMMSGYGMHG------RGKEALDIFDKMQKAGFV 612



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/453 (22%), Positives = 191/453 (42%), Gaps = 96/453 (21%)

Query: 49  HSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL 108
           HS++       GV  S      Y  CG  SDA ++ + +       +N ++    + G L
Sbjct: 77  HSYVSPKSLGTGVVAS------YLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRL 130

Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
           ++A  +                                RM++    +  + FTL   L A
Sbjct: 131 DRAIGVS------------------------------CRMLR--AGTKPDHFTLPYALKA 158

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DV 225
              +   R G   HG I   GF+S+  V +AL  MY + GS+ +A  +FD++  +   DV
Sbjct: 159 CGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDV 218

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIK------SGIRPNAFTFAGVLNACADHAAEELG 279
           +SW +++  + +         LFSE+        +  R +  +   +L ACA   A    
Sbjct: 219 ISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQT 278

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS----------- 328
           K++H Y  R G    +F  +AL+  Y+KCG+++++  VFN M   D+VS           
Sbjct: 279 KEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQS 338

Query: 329 ------------------------WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
                                   W+++IAGYAQ G   +AL+ F+ ++  G++P+ +  
Sbjct: 339 GKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTI 398

Query: 365 VGVLTACTHAGLVDKGLQ-YFHSIKE-----------KHGLTYTADHYACIVDLLARSGR 412
           + +L+AC   G + +G++ + +S+K+                    H A ++D+ ++   
Sbjct: 399 ISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNA-LIDMYSKCRS 457

Query: 413 FHEAEDVISKMPMKPDKFL-WASLLGGCRIHGN 444
           F  A  + + +P +    + W  ++GG   +G+
Sbjct: 458 FKAARTIFNSIPRRERNVVTWTVMIGGYAQYGD 490



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 19/186 (10%)

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + +V  Y  CG   ++  V   +     V W  L+  + + G  D+A+     +L++GT+
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTADHYAC--IVDLLARSGR 412
           PDH      L AC         L  + S    HGL     + ++ + C  +V + +RSG 
Sbjct: 147 PDHFTLPYALKACGE-------LPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGS 199

Query: 413 FHEAEDVISKMPMK--PDKFLWASLLG----GCRIHGNLDLAKRAAEALFEIEPENPATY 466
             +A  V  ++  K   D   W S++     G      LDL       + E      +  
Sbjct: 200 LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDI 259

Query: 467 VTMANI 472
           +++ NI
Sbjct: 260 ISIVNI 265


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 297/496 (59%), Gaps = 44/496 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS++  C   R    GK +H +L   G+    F +N L+DMYAK G+++DA ++
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISV 315

Query: 84  FDEMQERDVCSYNTMISG------------------------------------------ 101
           F+++++ D+ S+N +I+G                                          
Sbjct: 316 FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVD 375

Query: 102 -FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
            ++K   LE AR  F+ +P++D  +W A+ISGY +Y + +EAL L+  M   E    N+ 
Sbjct: 376 MYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK-EGIGFNQT 434

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TLS++L + + +Q + + +++HG  +++GF SD  V ++L D YGKC  + +A +IF++ 
Sbjct: 435 TLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 494

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
              D+VS+T+MI  Y Q G+ EE   LF E+    ++P+ F  + +LNACA+ +A E GK
Sbjct: 495 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 554

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H ++ + G+    FA ++LV+MY+KCG+++++ + F+ +    +VSW+++I G AQ+G
Sbjct: 555 QLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHG 614

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +AL+ F  +LK G  P+HI  V VL AC HAGLV +   YF S++E  G     +HY
Sbjct: 615 HGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY 674

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           AC++DLL R+G+ +EA ++++KMP + +  +W +LLG  RIH +++L +RAAE LF +EP
Sbjct: 675 ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP 734

Query: 461 ENPATYVTMANIYASA 476
           E   T+V +ANIYASA
Sbjct: 735 EKSGTHVLLANIYASA 750



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 199/382 (52%), Gaps = 40/382 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   YS L+  C   ++L  G ++H+H+  SG      I N L+++Y+KC         
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXF------ 107

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                            G+        AR L DE  + D  SW+A+ISGY +      AL
Sbjct: 108 -----------------GY--------ARKLVDESSEPDLVSWSALISGYAQNGLGGGAL 142

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             +  M +      N+FT SSVL A S ++ LR+GK++HG ++ +GF+ D  V + L  M
Sbjct: 143 MAFHEM-HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVM 201

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC    +++++FD++ +R+VVSW A+   Y Q     E   LF E++ SGI+PN F+ 
Sbjct: 202 YAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSL 261

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + ++NAC        GK +HGY+ ++GYD   F+A+ALV MY+K G++ ++  VF  + +
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 321

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYF--------ELLLKSGTQPDHIVFVGVLTACTHAG 375
           PD+VSW ++IAG   +   ++ALE            L+K   + D  V VG++   +   
Sbjct: 322 PDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCD 381

Query: 376 LVDKGLQYFHSIKEKHGLTYTA 397
           L++     F+ + EK  + + A
Sbjct: 382 LLEDARMAFNLLPEKDLIAWNA 403



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 202/451 (44%), Gaps = 106/451 (23%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS+++ C   + L  GK+VH  +  SGF+  VF++N L+ MYAKC    D+        
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS-------- 211

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  + LFDE+P+R+  SW A+ S YV+ +   EA+ L+  
Sbjct: 212 -----------------------KRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYE 248

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M        N+F+LSS+++A + ++    GK IHGY+++ G+D D    +AL DMY K G
Sbjct: 249 MV-LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG 307

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +A  +F+K+   D+VSW A+I         E+   L                     
Sbjct: 308 DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG------------------- 348

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
                   ++ +Q+H  + ++  +   F +  LV MYSKC  +E+++  FN +P  DL++
Sbjct: 349 --------QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 400

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W ++I+GY+Q     +AL  F  + K G   +      +L +         GLQ  H  +
Sbjct: 401 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQVVHVCR 453

Query: 389 EKHGLT----YTADHYAC--IVDLLARSGRFHEAE---------DVIS------------ 421
           + HGL+    + +D Y    ++D   +     +AE         D++S            
Sbjct: 454 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYG 513

Query: 422 -------------KMPMKPDKFLWASLLGGC 439
                         M +KPD+F+ +SLL  C
Sbjct: 514 QGEEALKLFLEMQDMELKPDRFVCSSLLNAC 544



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 4/290 (1%)

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           N      + S +LS     + LR G +IH +I ++G   D  + + L ++Y KC     A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYA 110

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           R++ D+  + D+VSW+A+I  Y Q G        F E+   G++ N FTF+ VL AC+  
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               +GKQVHG +   G++   F A+ LV MY+KC    +SK++F+ +P  ++VSW +L 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHG 392
           + Y Q     +A+  F  ++ SG +P+      ++ ACT  GL D    +  H    K G
Sbjct: 231 SCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLG 288

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             +       +VD+ A+ G   +A  V  K+  +PD   W +++ GC +H
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 69/127 (54%)

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           A+ + + K    P + +++ +L+ C    +   G Q+H ++T+ G        + L+++Y
Sbjct: 42  AILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY 101

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           SKC     ++K+ +    PDLVSW++LI+GYAQNG+   AL  F  +   G + +   F 
Sbjct: 102 SKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFS 161

Query: 366 GVLTACT 372
            VL AC+
Sbjct: 162 SVLKACS 168


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 285/501 (56%), Gaps = 44/501 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P   +  S ++ C    AL+  ++VH     SGF    F+ + L+ MY KC 
Sbjct: 104 QMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCN 163

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMIS 131
            I DA  +FD M E DV S++ +++ + + G +++A+ LF EM     Q +  SW  MI+
Sbjct: 164 QIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIA 223

Query: 132 GYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           G+       EA+ ++  M  + FE    +  T+SSVL AV  ++ L +G  IHGY+++ G
Sbjct: 224 GFNHSGLYSEAVLMFLDMHLRGFE---PDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKM----------------------------- 220
             SD+ V SAL DMYGKC   +E  Q+FD+M                             
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340

Query: 221 ------VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
                 ++ +VVSWT+MI    Q GR  E   LF E+  +G++PN+ T   +L AC + A
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIA 400

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A   GK  H +  R G     +  SAL+ MY+KCG ++ S+  F+G+P  +LV W ++IA
Sbjct: 401 ALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIA 460

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GYA +G   +A+E F+L+ +SG +PD I F  VL+AC+ +GL ++G  YF+S+  K+G+ 
Sbjct: 461 GYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIE 520

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              +HYAC+V LL+R+G+  +A  +I +MP+ PD  +W +LL  CR+H N+ L + AAE 
Sbjct: 521 ARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEK 580

Query: 455 LFEIEPENPATYVTMANIYAS 475
           LFE+EP NP  Y+ ++NIYAS
Sbjct: 581 LFELEPSNPGNYILLSNIYAS 601



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 219/511 (42%), Gaps = 113/511 (22%)

Query: 13  EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           +AL +L  + H   +I++ L        +L + ++ H+H+  +G      ++  LL  YA
Sbjct: 6   QALALLDSVQH---TIFNCLNS---TTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYA 59

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG 132
                +DA  + D + E +V S++T+I  F+K      A + F +M  R          G
Sbjct: 60  NNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTR----------G 109

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
            +  N+                       L S + A + +  L+  +++HG    +GFDS
Sbjct: 110 LMPDNR----------------------VLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D  V S+L  MY KC  I +A ++FD+M + DVVSW+A++  Y ++G  +E   LFSE+ 
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 253 KSGIRPNAFTFAG-----------------------------------VLNACADHAAEE 277
            SG++PN  ++ G                                   VL A  D     
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLV 267

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKC----------------------------- 308
           +G  +HGY+ + G       +SAL+ MY KC                             
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327

Query: 309 --GNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
             G VE+S ++F  +       ++VSWTS+IA  +QNG   +ALE F  +  +G +P+ +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSV 387

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               +L AC +   +  G +  H    + G++      + ++D+ A+ GR   +      
Sbjct: 388 TIPCLLPACGNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDG 446

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
           +P K +   W +++ G  +HG    AK A E
Sbjct: 447 IPTK-NLVCWNAVIAGYAMHGK---AKEAME 473


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 194/486 (39%), Positives = 287/486 (59%), Gaps = 25/486 (5%)

Query: 14  ALQILHQISHP---SPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           AL + H+++     SP + S  +++  C    A   G++VH     SG    VF+ N ++
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVV 406

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNF 124
           DMYAKCG + +A  +F  M+ +DV S+N M++G+++ G LE A +LF+ M +     D  
Sbjct: 407 DMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVV 466

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA+I+GY +  Q  EALD++R M +   S  N  TL S+LSA  ++  L  GKE H Y
Sbjct: 467 TWTAVITGYAQRGQGCEALDVFRQMCDC-GSRPNVVTLVSLLSACVSVGALLHGKETHCY 525

Query: 185 IMR---------TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV--DRDVVSWTAMIG 233
            ++          G D  +V+ + L DMY KC S   AR++FD +   DRDVV+WT MIG
Sbjct: 526 AIKFILNLDGPDPGADDLKVI-NGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIG 584

Query: 234 RYFQEGRREEGFALFSELIK--SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
            Y Q G       LFS + K    I+PN FT +  L ACA  AA   G+QVH Y+ R  Y
Sbjct: 585 GYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFY 644

Query: 292 DPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                F A+ L+ MYSK G+V+ ++ VF+ MP+ + VSWTSL+ GY  +G  + AL  F+
Sbjct: 645 GSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFD 704

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            + K    PD I F+ VL AC+H+G+VD G+ +F+ + +  G+    +HYAC+VDL  R+
Sbjct: 705 EMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRA 764

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           GR  EA  +I++MPM+P   +W +LL  CR+H N++L + AA  L E+E  N  +Y  ++
Sbjct: 765 GRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLS 824

Query: 471 NIYASA 476
           NIYA+A
Sbjct: 825 NIYANA 830



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 228/506 (45%), Gaps = 89/506 (17%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  + + C    +L  G  +H+ +  SGF   VF+ N ++ MY KCG        
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCG-------- 308

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPI 140
                                  +L  A N+FD++  R   D  SW +++S Y+  +   
Sbjct: 309 -----------------------ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDAN 345

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            AL L+  M        +  +L ++L A +++     G+++HG+ +R+G   D  V +A+
Sbjct: 346 TALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAV 405

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI---- 256
            DMY KCG + EA ++F +M  +DVVSW AM+  Y Q GR E   +LF  + +  I    
Sbjct: 406 VDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDV 465

Query: 257 -------------------------------RPNAFTFAGVLNACADHAAEELGKQVHGY 285
                                          RPN  T   +L+AC    A   GK+ H Y
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCY 525

Query: 286 MTRI-----GYDPYS---FAASALVHMYSKCGNVENSKKVFNGM-PRP-DLVSWTSLIAG 335
             +      G DP +      + L+ MY+KC + E ++K+F+ + P+  D+V+WT +I G
Sbjct: 526 AIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGG 585

Query: 336 YAQNGMPDKALEYFELLLK--SGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHG 392
           YAQ+G  + AL+ F  + K     +P+       L AC     +  G Q + + ++  +G
Sbjct: 586 YAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG 645

Query: 393 --LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             + + A+   C++D+ ++SG    A+ V   MP + +   W SL+ G  +HG  + A R
Sbjct: 646 SVMLFVAN---CLIDMYSKSGDVDTAQIVFDNMPQR-NAVSWTSLMTGYGMHGRGEDALR 701

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
             + + ++ P  P     +  +YA +
Sbjct: 702 VFDEMRKV-PLVPDGITFLVVLYACS 726



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           V  W  +I R    G   + F L+ ++   G  P+ +TF  V  ACA+ ++  LG  +H 
Sbjct: 224 VFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHA 283

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGM 341
            ++R G+    F  +A+V MY KCG + ++  +F+ +      DLVSW S+++ Y     
Sbjct: 284 TVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASD 343

Query: 342 PDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
            + AL  F ++  +    PD I  V +L AC       +G Q  H    + GL       
Sbjct: 344 ANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ-VHGFSIRSGLVDDVFVG 402

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG----CRIHGNLDLAKRAAEALF 456
             +VD+ A+ G+  EA  V  +M  K D   W +++ G     R+   L L +R  E   
Sbjct: 403 NAVVDMYAKCGKMEEANKVFQRMKFK-DVVSWNAMVTGYSQAGRLEHALSLFERMTEENI 461

Query: 457 EIE 459
           E++
Sbjct: 462 ELD 464


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/453 (37%), Positives = 277/453 (61%), Gaps = 33/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  ++YS ++  C   R L++G+ +H+H++SS F+  + + N +L+MYAKC         
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC--------- 153

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                 GSLE+A++LFD+MP +D  SWT +ISGY +  Q  EAL
Sbjct: 154 ----------------------GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEAL 191

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M +      N+FTLSS+L A         G+++H + ++ G+D +  V S+L DM
Sbjct: 192 ALFPKMLHL-GFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDM 250

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +   + EA+ IF+ +  ++VVSW A+I  + ++G  E    LF ++++ G  P  FT+
Sbjct: 251 YARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTY 310

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + V  ACA   + E GK VH ++ + G  P ++  + L+ MY+K G+++++KKVF  + +
Sbjct: 311 SSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVK 370

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSW S+I+GYAQ+G+  +AL+ FE +LK+  QP+ I F+ VLTAC+H+GL+D+G QY
Sbjct: 371 QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEG-QY 429

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +  + +KH +     H+  +VDLL R+GR +EA   I +MP+KP   +W +LLG CR+H 
Sbjct: 430 YFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHK 489

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N+DL   AAE +FE++P +   +V ++NIYASA
Sbjct: 490 NMDLGVYAAEQIFELDPHDSGPHVLLSNIYASA 522



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 153/320 (47%), Gaps = 33/320 (10%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++LH    P+    SSL++      +   G+++H+     G+   V + + LLDMYA+  
Sbjct: 196 KMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWA 255

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           ++ +A+ +F+ +  ++V S+N +I+G  + G  E    LF +M                 
Sbjct: 256 HMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQM----------------- 298

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                       + Q FE +    FT SSV +A ++   L  GK +H +++++G      
Sbjct: 299 ------------LRQGFEPT---HFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAY 343

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + + L DMY K GSI +A+++F ++V +D+VSW ++I  Y Q G   E   LF +++K+ 
Sbjct: 344 IGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK 403

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           ++PN  TF  VL AC+     + G+     M +   +        +V +  + G +  + 
Sbjct: 404 VQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEAN 463

Query: 316 KVFNGMP-RPDLVSWTSLIA 334
           K    MP +P    W +L+ 
Sbjct: 464 KFIEEMPIKPTAAVWGALLG 483



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 139/324 (42%), Gaps = 74/324 (22%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           LQ+L Q   P+   YSS+   C  + +LE+GK VH+H+  SG +P  +I N L+DMYAK 
Sbjct: 296 LQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKS 355

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G+I DA+ +F  + ++D+ S+N++ISG+ + G   +A  LF++M +              
Sbjct: 356 GSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK------------ 403

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
              QP                  N+ T  SVL+A S    L  G+     + +   ++  
Sbjct: 404 --VQP------------------NEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQV 443

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                + D+ G+ G +NEA +  ++M                                  
Sbjct: 444 AHHVTVVDLLGRAGRLNEANKFIEEM---------------------------------- 469

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV-HMYSKCGNVEN 313
            I+P A  +  +L +C  H   +LG  V+        DP+      L+ ++Y+  G + +
Sbjct: 470 PIKPTAAVWGALLGSCRMHKNMDLG--VYAAEQIFELDPHDSGPHVLLSNIYASAGRLSD 527

Query: 314 SKKVF-----NGMPRPDLVSWTSL 332
           + KV      +G+ +    SW  +
Sbjct: 528 AAKVRKMMKESGVKKEPACSWVEI 551


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 274/456 (60%), Gaps = 4/456 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++  EEG+++H+ +   G +   +    L+ MYA+ G + DA+ +
Sbjct: 81  PNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKV 140

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD   +RDV S   +I+G+   G +  AR +FD + +RD  SW AMI+GYV      EAL
Sbjct: 141 FDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEAL 200

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSD 202
           +L++ M    N   ++ TL SVLSA +    + LG+EIH  +    GF S   + +A   
Sbjct: 201 ELFKEMMR-TNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIG 259

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y KCG +  A  +F+ +  +DVVSW  +IG Y      +E   LF E+++SG  PN  T
Sbjct: 260 LYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 319

Query: 263 FAGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
              VL ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E + +VFN 
Sbjct: 320 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNS 379

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M    L SW ++I G+A +G  + A + F  + K+G +PD I  VG+L+AC+H+GL+D G
Sbjct: 380 MMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLG 439

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
              F S+ + + +T   +HY C++DLL  +G F EAE++I  MPM+PD  +W SLL  C+
Sbjct: 440 RHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACK 499

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +HGNL+LA+  A+ L EIEPEN  +YV ++NIYA+A
Sbjct: 500 MHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATA 535



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 181/379 (47%), Gaps = 45/379 (11%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L  A ++F+   + +   W  M+ G    +  +  L++Y  M +    V N +T   +L 
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVS-XGHVPNAYTFPFLLK 91

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           + +  +    G++IH  +M+ G + D    ++L  MY + G + +AR++FD    RDVVS
Sbjct: 92  SCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVS 151

Query: 228 -------------------------------WTAMIGRYFQEGRREEGFALFSELIKSGI 256
                                          W AMI  Y +    EE   LF E++++ +
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV 211

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS-----ALVHMYSKCGNV 311
           RP+  T   VL+ACA   + ELG+++H  +     D + F +S     A + +YSKCG+V
Sbjct: 212 RPDEGTLVSVLSACAQSGSIELGREIHTLVD----DHHGFGSSLKIVNAFIGLYSKCGDV 267

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           E +  +F G+   D+VSW +LI GY    +  +AL  F+ +L+SG  P+ +  + VL AC
Sbjct: 268 EIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 327

Query: 372 THAGLVDKGLQYFHSIKEKH--GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
            H G +D G ++ H   +K   G+T  +     ++D+ A+ G    A  V + M M    
Sbjct: 328 AHLGAIDIG-RWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSM-MHKSL 385

Query: 430 FLWASLLGGCRIHGNLDLA 448
             W +++ G  +HG  + A
Sbjct: 386 SSWNAMIFGFAMHGRANAA 404



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 146/329 (44%), Gaps = 48/329 (14%)

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKC------GSINEARQIFDKMVDRDVVSWTAMIGRY 235
           H  +++TG  +      ALS +   C        +  A  +F+   + +++ W  M+   
Sbjct: 2   HAQMVKTGLHNTNY---ALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGL 58

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                      ++  ++  G  PNA+TF  +L +CA     E G+Q+H  + ++G +   
Sbjct: 59  ASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDR 118

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP------------- 342
           +A ++L+ MY++ G +E+++KVF+   + D+VS T+LI GYA  G               
Sbjct: 119 YAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER 178

Query: 343 ------------------DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
                             ++ALE F+ ++++  +PD    V VL+AC  +G ++ G +  
Sbjct: 179 DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH 238

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             + + HG   +       + L ++ G    A  +   +  K D   W +L+GG   + +
Sbjct: 239 TLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCK-DVVSWNTLIGG---YTH 294

Query: 445 LDLAKRA----AEALFEIEPENPATYVTM 469
           ++L K A     E L   E  N  T +++
Sbjct: 295 MNLYKEALLLFQEMLRSGESPNDVTMLSV 323


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  350 bits (899), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 273/451 (60%), Gaps = 5/451 (1%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           P I+ S    C    A++ GK+VHS +   GF   VF  N L++ YAK  ++  A+ +FD
Sbjct: 100 PPIFKS----CASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFD 155

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
            +  +D  +YN +IS +++ G +  AR LFD+M  R   SW AMIS Y +     +   +
Sbjct: 156 GILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWII 215

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           ++ MQ+ E    N+ TL++VLS  + +  L +G  I          S+ +V +A+ +MY 
Sbjct: 216 FQRMQD-EMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYV 274

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KCG++++ R +FD M  RDVV+W+AMI  Y Q GR  E   LF  +  + I+PN  T   
Sbjct: 275 KCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVS 334

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL+ACA   + E G+++  Y+   G     + ASAL+ MYSKCGN+  ++++F+ +P+ D
Sbjct: 335 VLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRD 394

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
            V+W S+I G A NG  + A+  +  + +   +P++I FVG++TACTHAG V+ GL++F 
Sbjct: 395 NVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFR 454

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           S++  H ++   +H+ACIVDL  RSGR  +A + I +M ++P+  +W +LL   RIH N+
Sbjct: 455 SMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNV 514

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ A + L E+EP+N   YV ++NIYASA
Sbjct: 515 ELAELAGKKLLELEPDNSGNYVILSNIYASA 545



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 190/391 (48%), Gaps = 42/391 (10%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVL 166
           ++ AR +FD++P  D     + I+ Y R +   EAL  +  M QN    V   FT+  + 
Sbjct: 46  IQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVC--FTIPPIF 103

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDS-------------------------------DEV 195
            + +++  + +GK++H  ++R GF S                               D +
Sbjct: 104 KSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTI 163

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
            ++ L   Y + G +  AR++FDKM DR +VSW AMI  Y Q G   +G+ +F  +    
Sbjct: 164 AYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEM 223

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
             PN  T A VL+ CA     E+G ++               ++A++ MY KCG V++ +
Sbjct: 224 CEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGR 283

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            VF+ M R D+V+W+++IAGYAQNG  ++ALE FE +  +  +P+ +  V VL+AC   G
Sbjct: 284 LVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLG 343

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            V+ G +   S  E  GL       + ++ + ++ G   +A  +  K+P + D   W S+
Sbjct: 344 SVETG-ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQR-DNVTWNSM 401

Query: 436 LGGCRIHG----NLDLAKRAAEALFEIEPEN 462
           + G  I+G     + L  R  E   E++P N
Sbjct: 402 IMGLAINGFAEDAIALYNRMKE--IEVKPNN 430



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 153/318 (48%), Gaps = 34/318 (10%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           ++  P+    ++++  C +   LE G ++     +      + +S  +L+MY KCG + D
Sbjct: 222 EMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDD 281

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
            + +FD M  RDV +++ MI+G+ + G   +A  LF+ M        +A I       +P
Sbjct: 282 GRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMK-------SAQI-------KP 327

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                             N  TL SVLSA + +  +  G+ I  Y+   G  S+  V SA
Sbjct: 328 ------------------NDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASA 369

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY KCG+I +ARQIFDK+  RD V+W +MI      G  E+  AL++ + +  ++PN
Sbjct: 370 LLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPN 429

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
             TF G++ AC      ELG +    M +     P     + +V ++ + G + ++ +  
Sbjct: 430 NITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFI 489

Query: 319 NGMP-RPDLVSWTSLIAG 335
             M   P++V W +L++ 
Sbjct: 490 CRMEVEPNVVIWGTLLSA 507



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 15/201 (7%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EAL++   +      P+     S++  C Q  ++E G+++ S+++S G    V++++
Sbjct: 309 RSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVAS 368

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ----R 121
            LL MY+KCGNI  A+ +FD++ +RD  ++N+MI G    G  E A  L++ M +     
Sbjct: 369 ALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKP 428

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           +N ++  +++           L+ +R M++  N   N    + ++         R G+ I
Sbjct: 429 NNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFC-----RSGRLI 483

Query: 182 HGY--IMRTGFDSDEVVWSAL 200
             Y  I R   + + V+W  L
Sbjct: 484 DAYEFICRMEVEPNVVIWGTL 504


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 177/466 (37%), Positives = 273/466 (58%), Gaps = 36/466 (7%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF-- 102
           G++VH      GF+  + ++N LLDMYAK GN+  A+ +F  M E  V S+N MI+G+  
Sbjct: 242 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQ 301

Query: 103 ---------------------------------TKGGSLEQARNLFDEMPQRDNFSWTAM 129
                                             K G +E  R +FD M      SW  +
Sbjct: 302 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTI 361

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           +SGY +     EA+ L+R MQ F +   ++ TL+ +LS+++ +  L  G+++H    +  
Sbjct: 362 LSGYSQNENHKEAVKLFREMQ-FRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAV 420

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F +D  + S L  MY KCG +  A++IFD++ + D+V W +M+         +E F  F 
Sbjct: 421 FRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFK 480

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           ++ + G+ P+ F++A VL+ CA  ++   G+QVH  + R GY   +F  SAL+ MYSKCG
Sbjct: 481 KMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCG 540

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           +V+ ++ VF+ M   + V+W  +I GYAQNG  D+A+  +E ++ SG +PD I FV VLT
Sbjct: 541 DVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLT 600

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H+GLVD G++ F+S++++HG+    DHY CI+D L R+GR HEAE +I KMP K D 
Sbjct: 601 ACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDP 660

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +W  LL  CR++ ++ LA+RAAE LF ++P+N A YV +ANIY+S
Sbjct: 661 IIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSS 706



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 185/369 (50%), Gaps = 44/369 (11%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +SL+Q C   +A   GK +H+H+  S      F+SN L++ YAKC  I  ++ LFD+M +
Sbjct: 9   ASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPK 68

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           RD+ ++N ++  + K   LE A  LF EMP+R+  SW  +IS   R              
Sbjct: 69  RDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTR-------------- 114

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                        +    A+  ++C   G+  HG  ++ G D++  V +AL  MY KC  
Sbjct: 115 -------------NGACGALVDVEC---GRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 158

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I +A Q F  + + + VS+TAM+G      +  E F LF  ++++ I  ++ + + VL  
Sbjct: 159 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 218

Query: 270 CADHAAEEL--------------GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           C+     E               G+QVH    + G++      ++L+ MY+K GN+++++
Sbjct: 219 CSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE 278

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            +F  MP   +VSW  +IAGY Q     KA+EY + +   G +PD I +V +L AC  +G
Sbjct: 279 MIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSG 338

Query: 376 LVDKGLQYF 384
            ++ G Q F
Sbjct: 339 DIEAGRQMF 347



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 171/345 (49%), Gaps = 41/345 (11%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++  ++     HP  +  + ++        LE G++VH+  + + F+  +++++ L
Sbjct: 372 KEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGL 431

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY+KCG +  A+ +FD + E D+  +N+M++G +     ++A   F +M ++  F   
Sbjct: 432 IGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMF--- 488

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         ++F+ ++VLS  + +  L  G+++H  I R
Sbjct: 489 -----------------------------PSQFSYATVLSCCAKLSSLSQGRQVHSQIAR 519

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G+ +D  V SAL DMY KCG ++ AR +FD M+ ++ V+W  MI  Y Q G  +E   L
Sbjct: 520 EGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLL 579

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           + ++I SG +P+  TF  VL AC+     + G ++   M +  G +P     + ++    
Sbjct: 580 YEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLG 639

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAG---YAQNGMPDKALE 347
           + G +  ++ + + MP + D + W  L++    YA   +  +A E
Sbjct: 640 RAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAE 684



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 25/312 (8%)

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK IH +++R+    D  + + L + Y KC +I+ +R++FD+M  RD+ +W A++G Y +
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 238 EGRREEGFALFSELIKSGIRP-NAFTFAGVLN-ACADHAAEELGKQVHGYMTRIGYDPYS 295
               E+   LF+E+ +  I   N    A   N AC      E G++ HG   +IG D   
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNI 143

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           +  +AL+ MY+KC  + ++ + F  +P P+ VS+T+++ G A +   ++A   F L+L++
Sbjct: 144 YVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRN 203

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGL-------------QYFHSIKEKHGLTYTADHYAC 402
               D +    VL  C+  G  + GL             Q  H +  KHG          
Sbjct: 204 RIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNS 263

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI---- 458
           ++D+ A++G    AE +   MP +     W  ++ G   +G    + +A E L  +    
Sbjct: 264 LLDMYAKNGNMDSAEMIFVNMP-EVSVVSWNVMIAG---YGQKSQSSKAIEYLQRMQYHG 319

Query: 459 -EPENPATYVTM 469
            EP+   TYV M
Sbjct: 320 FEPDE-ITYVNM 330


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 279/486 (57%), Gaps = 34/486 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +++++  C   +AL+ GKKVHS +   G    V ++N LL+MYAKCG+   A+ +
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVV 202

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M+ +D  ++NTMIS   +    + A  LFD+M   D  SW ++I+GY      I AL
Sbjct: 203 FDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRAL 262

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           + +  M    +   +KFTL SVLSA +  + L+LGK+IH +I+R   D    V +AL  M
Sbjct: 263 ETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISM 322

Query: 204 YGKCGS---------------------------------INEARQIFDKMVDRDVVSWTA 230
           Y K G+                                 I+ AR IFD +  RDVV+WTA
Sbjct: 323 YAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTA 382

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G   +   LF  +I+ G +PN +T A VL+  +  A+ + GKQ+H    R+ 
Sbjct: 383 MIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLE 442

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                   +AL+ MYS+ G++++++K+FN +    D ++WTS+I   AQ+G+ ++A+E F
Sbjct: 443 EVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELF 502

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           E +L+   +PDHI +VGVL+ACTH GLV++G  YF+ +K  H +  T+ HYAC++DLL R
Sbjct: 503 EKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGR 562

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G   EA + I  MP++PD   W SLL  CR+H  +DLAK AAE L  I+P N   Y+ +
Sbjct: 563 AGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLAL 622

Query: 470 ANIYAS 475
           AN  ++
Sbjct: 623 ANTLSA 628



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 245/504 (48%), Gaps = 76/504 (15%)

Query: 24  PSPSIYSS----LIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNIS 78
           P+P  +S     L+Q   ++R    G+ +H+ +   G +  GVF++N LL++Y K G+ S
Sbjct: 6   PNPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSS 65

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           DA  LFDEM  +   S+NT++S   K G+L+ AR +FDE+PQ D+ SWT MI GY     
Sbjct: 66  DAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGL 125

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
              A+  +  M +   S   +FT ++VL++ +A Q L +GK++H ++++ G      V +
Sbjct: 126 FKSAVHAFLRMVSSGIS-PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN 184

Query: 199 ALSDMYGKCG-------------------------------SINEARQIFDKMVDRDVVS 227
           +L +MY KCG                                 + A  +FD+M D D+VS
Sbjct: 185 SLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVS 244

Query: 228 WTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           W ++I  Y  +G        FS ++K S ++P+ FT   VL+ACA+  + +LGKQ+H ++
Sbjct: 245 WNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHI 304

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVE---------------------------------N 313
            R   D      +AL+ MY+K G VE                                  
Sbjct: 305 VRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDP 364

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ +F+ +   D+V+WT++I GYAQNG+   AL  F L+++ G +P++     VL+  + 
Sbjct: 365 ARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISS 424

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
              +D G Q  H++  +     +      ++ + +RSG   +A  + + +    D   W 
Sbjct: 425 LASLDHGKQ-LHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWT 483

Query: 434 SLLGGCRIHGNLDLAKRAAEALFE 457
           S++     HG   L   A E LFE
Sbjct: 484 SMILSLAQHG---LGNEAIE-LFE 503


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  350 bits (898), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 177/466 (37%), Positives = 273/466 (58%), Gaps = 36/466 (7%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF-- 102
           G++VH      GF+  + ++N LLDMYAK GN+  A+ +F  M E  V S+N MI+G+  
Sbjct: 271 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQ 330

Query: 103 ---------------------------------TKGGSLEQARNLFDEMPQRDNFSWTAM 129
                                             K G +E  R +FD M      SW  +
Sbjct: 331 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTI 390

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           +SGY +     EA+ L+R MQ F +   ++ TL+ +LS+++ +  L  G+++H    +  
Sbjct: 391 LSGYSQNENHKEAVKLFREMQ-FRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAV 449

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F +D  + S L  MY KCG +  A++IFD++ + D+V W +M+         +E F  F 
Sbjct: 450 FRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFK 509

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           ++ + G+ P+ F++A VL+ CA  ++   G+QVH  + R GY   +F  SAL+ MYSKCG
Sbjct: 510 KMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCG 569

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           +V+ ++ VF+ M   + V+W  +I GYAQNG  D+A+  +E ++ SG +PD I FV VLT
Sbjct: 570 DVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLT 629

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H+GLVD G++ F+S++++HG+    DHY CI+D L R+GR HEAE +I KMP K D 
Sbjct: 630 ACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDP 689

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +W  LL  CR++ ++ LA+RAAE LF ++P+N A YV +ANIY+S
Sbjct: 690 IIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSS 735



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 199/369 (53%), Gaps = 15/369 (4%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +SL+Q C   +A   GK +H+H+  S      F+SN L++ YAKC  I  ++ LFD+M +
Sbjct: 9   ASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPK 68

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           RD+ ++N ++  + K   LE A  LF EMP+R+  SW  +IS   R     +AL +Y  M
Sbjct: 69  RDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRM 128

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
              E  V   FTL+SVLSA  A+  +  G+  HG  ++ G D++  V +AL  MY KC  
Sbjct: 129 SR-EGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I +A Q F  + + + VS+TAM+G      +  E F LF  ++++ I  ++ + + VL  
Sbjct: 188 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 247

Query: 270 CADHAAEEL--------------GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           C+     E               G+QVH    + G++      ++L+ MY+K GN+++++
Sbjct: 248 CSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE 307

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            +F  MP   +VSW  +IAGY Q     KA+EY + +   G +PD I +V +L AC  +G
Sbjct: 308 MIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSG 367

Query: 376 LVDKGLQYF 384
            ++ G Q F
Sbjct: 368 DIEAGRQMF 376



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 171/345 (49%), Gaps = 41/345 (11%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++  ++     HP  +  + ++        LE G++VH+  + + F+  +++++ L
Sbjct: 401 KEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGL 460

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY+KCG +  A+ +FD + E D+  +N+M++G +     ++A   F +M ++  F   
Sbjct: 461 IGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMF--- 517

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         ++F+ ++VLS  + +  L  G+++H  I R
Sbjct: 518 -----------------------------PSQFSYATVLSCCAKLSSLSQGRQVHSQIAR 548

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G+ +D  V SAL DMY KCG ++ AR +FD M+ ++ V+W  MI  Y Q G  +E   L
Sbjct: 549 EGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLL 608

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           + ++I SG +P+  TF  VL AC+     + G ++   M +  G +P     + ++    
Sbjct: 609 YEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLG 668

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAG---YAQNGMPDKALE 347
           + G +  ++ + + MP + D + W  L++    YA   +  +A E
Sbjct: 669 RAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAE 713



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 154/341 (45%), Gaps = 54/341 (15%)

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK IH +++R+    D  + + L + Y KC +I+ +R++FD+M  RD+ +W A++G Y +
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 238 EGRREEGFALFSEL-------------------------------IKSGIRPNAFTFAGV 266
               E+   LF+E+                                + G  P  FT A V
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASV 143

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+AC      E G++ HG   +IG D   +  +AL+ MY+KC  + ++ + F  +P P+ 
Sbjct: 144 LSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNE 203

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL----- 381
           VS+T+++ G A +   ++A   F L+L++    D +    VL  C+  G  + GL     
Sbjct: 204 VSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSND 263

Query: 382 --------QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
                   Q  H +  KHG          ++D+ A++G    AE +   MP +     W 
Sbjct: 264 VLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP-EVSVVSWN 322

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEI-----EPENPATYVTM 469
            ++ G   +G    + +A E L  +     EP+   TYV M
Sbjct: 323 VMIAG---YGQKSQSSKAIEYLQRMQYHGFEPDE-ITYVNM 359



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 190/437 (43%), Gaps = 63/437 (14%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL + +++S     P+    +S++  C     +E G++ H      G    +++ N L
Sbjct: 119 QKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNAL 178

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L MYAKC  I DA   F ++ E +  S+  M+ G      + +A  LF  M         
Sbjct: 179 LGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLM--------- 229

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                 +R    ++++ L  ++         +F L      +S+      G+++H   ++
Sbjct: 230 ------LRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDV---HGQQVHCLTIK 280

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF+SD  + ++L DMY K G+++ A  IF  M +  VVSW  MI  Y Q+ +  +    
Sbjct: 281 HGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEY 340

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
              +   G  P+  T+  +L AC                                    K
Sbjct: 341 LQRMQYHGFEPDEITYVNMLVACI-----------------------------------K 365

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G++E  +++F+GM  P L SW ++++GY+QN    +A++ F  +      PD      +
Sbjct: 366 SGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAII 425

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPM 425
           L++     L++ G Q  H++ +K    +  D Y  + ++ + ++ G+   A+ +  ++  
Sbjct: 426 LSSLAGMMLLEGGRQ-VHAVSQK--AVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIA- 481

Query: 426 KPDKFLWASLLGGCRIH 442
           + D   W S++ G  ++
Sbjct: 482 ELDIVCWNSMMAGLSLN 498


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/453 (38%), Positives = 278/453 (61%), Gaps = 34/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  ++YS ++  C   R L++G+ +H+H++SS F+  + + N +L+MYAKC         
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC--------- 153

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                 GSLE+A++LFD+MP +D  SWT +ISGY +  Q  EAL
Sbjct: 154 ----------------------GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEAL 191

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M +      N+FTLSS+L A         G+++H + ++ G+D +  V S+L DM
Sbjct: 192 ALFPKMLHL-GFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDM 250

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +   + EA+ IF+ +  ++VVSW A+I  + ++G  E    LF ++++ G  P  FT+
Sbjct: 251 YARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTY 310

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + VL ACA   + E GK VH ++ + G  P ++  + L+ MY+K G+++++KKVF  + +
Sbjct: 311 SSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVK 369

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSW S+I+GYAQ+G+  +AL+ FE +LK+  QP+ I F+ VLTAC+H+GL+D+G QY
Sbjct: 370 QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEG-QY 428

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +  + +KH +     H+  +VDLL R+GR +EA   I +MP+KP   +W +LLG CR+H 
Sbjct: 429 YFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHK 488

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N+DL   AAE +FE++P +   +V ++NIYASA
Sbjct: 489 NMDLGVYAAEQIFELDPHDSGPHVLLSNIYASA 521



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 153/321 (47%), Gaps = 34/321 (10%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++LH    P+    SSL++      +   G+++H+     G+   V + + LLDMYA+  
Sbjct: 196 KMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWA 255

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           ++ +A+ +F+ +  ++V S+N +I+G  + G  E    LF +M                 
Sbjct: 256 HMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQM----------------- 298

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                       + Q FE +    FT SSVL+  S+   L  GK +H +++++G      
Sbjct: 299 ------------LRQGFEPT---HFTYSSVLACASS-GSLEQGKWVHAHVIKSGGQPIAY 342

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + + L DMY K GSI +A+++F ++V +D+VSW ++I  Y Q G   E   LF +++K+ 
Sbjct: 343 IGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK 402

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           ++PN  TF  VL AC+     + G+     M +   +        +V +  + G +  + 
Sbjct: 403 VQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEAN 462

Query: 316 KVFNGMP-RPDLVSWTSLIAG 335
           K    MP +P    W +L+  
Sbjct: 463 KFIEEMPIKPTAAVWGALLGA 483


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 275/455 (60%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L + C +++A +EGK++H+ +   G    + +   L+ MYA+ G + DA  +
Sbjct: 76  PNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKV 135

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RDV SY  MI+G+   G++++A+ +FDE+P +D  SW AMISGY    +  EAL
Sbjct: 136 FDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEAL 195

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M   +    ++ T+++VLS  +    + LG++IH +I   GF S+  + +AL D+
Sbjct: 196 ELFNEMMKMDVK-PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDL 254

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ +  +DV+SW  +IG Y      +E   +F E++K G  PN  T 
Sbjct: 255 YSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTM 314

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A ++G+ +H Y+ +   G    +   ++L+ MY+KCGN+E + +VF+ +
Sbjct: 315 LSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI 374

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L S  ++I G+A +G  D A +    + K G +PD I FVG+L+AC+HAGL D G 
Sbjct: 375 LNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR 434

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + F S+   + +    +HY C++DLL RSG F EAE++I+ M M+PD  +W SLL  C+I
Sbjct: 435 KIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKI 494

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           H NL+L +  A+ L +IEP+NP +YV ++NIYA++
Sbjct: 495 HKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATS 529



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 196/424 (46%), Gaps = 72/424 (16%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L  A ++F  + + +  SW  MI G+   + PI AL+LY  M +   S  N +T   +  
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLS-PNSYTFPFLFK 86

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD--------- 218
           + +  +  + GK+IH  I++ G   D  V ++L  MY + G + +A ++FD         
Sbjct: 87  SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 219 ------------------KMVD----RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
                             KM D    +DVVSW AMI  Y + GR +E   LF+E++K  +
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  T A VL+ C      ELG+Q+H ++   G+       +AL+ +YSKCG +E +  
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F G+   D++SW +LI GYA      +AL  F+ +LK G  P+ +  + +L AC H G 
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 377 VDKGLQYFHSIKEK--HGLTYTADHYACIVDLLARSGRFHEAE----------------- 417
           +D G ++ H   +K   G+         ++D+ A+ G    A                  
Sbjct: 327 IDIG-RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAM 385

Query: 418 --------------DVISKMP---MKPDKFLWASLLGGCRIHGNLDLAKRAAEAL---FE 457
                         D++S+M    ++PD   +  LL  C   G  DL ++  +++   + 
Sbjct: 386 IFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYR 445

Query: 458 IEPE 461
           IEP+
Sbjct: 446 IEPK 449



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF  +  P+ +SW ++I G+A +  P  AL  +  ++  G  P+   F  +  +C  +  
Sbjct: 34  VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
             +G Q  H+   K+GLT     +  ++ + A++G   +A  V      + D   + +++
Sbjct: 94  AQEGKQ-IHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR-DVVSYTAMI 151

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            G    GN+D A++  +   EI  ++  ++  M + YA
Sbjct: 152 TGYASRGNMDKAQKMFD---EIPIKDVVSWNAMISGYA 186


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 178/466 (38%), Positives = 277/466 (59%), Gaps = 13/466 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + EA  +  ++ H +   ++ L+    ++  LEE ++    L  S     +   NCL+  
Sbjct: 142 VDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARR----LFESKSDWELISCNCLMGG 197

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y K   + DA+ LFD++  RD+ S+NTMISG+ + G L QAR LF+E P RD F+WTAM+
Sbjct: 198 YVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMV 257

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
             YV+     EA  ++  M         + + + +++  +  + + +G+E+   +     
Sbjct: 258 YAYVQDGMLDEARRVFDEMPQ-----KREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNI 312

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            S    W+ +   Y + G + +AR +FD M  RD VSW A+I  Y Q G  EE   +  E
Sbjct: 313 GS----WNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVE 368

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + + G   N  TF   L+ACAD AA ELGKQVHG + R GY+      +ALV MY KCG 
Sbjct: 369 MKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGC 428

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           ++ +  VF G+   D+VSW +++AGYA++G   +AL  FE ++ +G +PD I  VGVL+A
Sbjct: 429 IDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSA 488

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H GL D+G +YFHS+ + +G+T  + HYAC++DLL R+G   EA+++I  MP +PD  
Sbjct: 489 CSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAA 548

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            W +LLG  RIHGN++L ++AAE +F++EP N   YV ++N+YA++
Sbjct: 549 TWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAAS 594



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 197/400 (49%), Gaps = 53/400 (13%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F  N +L  YA+   + DA+ LFD M E+DV S+N M+SG+ + G +++AR++FD MP 
Sbjct: 95  LFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPH 154

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +++ SW  +++ YVR  +  EA  L+    ++E               + +  CL     
Sbjct: 155 KNSISWNGLLAAYVRSGRLEEARRLFESKSDWE---------------LISCNCL----- 194

Query: 181 IHGYIMRTG-------FDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           + GY+ R         FD     D + W+ +   Y + G +++AR++F++   RDV +WT
Sbjct: 195 MGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWT 254

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           AM+  Y Q+G  +E   +F E+ +        ++  ++   A +   ++G+++   M   
Sbjct: 255 AMVYAYVQDGMLDEARRVFDEMPQK----REMSYNVMIAGYAQYKRMDMGRELFEEMPF- 309

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
              P   + + ++  Y + G++  ++ +F+ MP+ D VSW ++IAGYAQNG+ ++A+   
Sbjct: 310 ---PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG-LTYTADHYAC-----I 403
             + + G   +   F   L+AC     ++ G       K+ HG +  T     C     +
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELG-------KQVHGQVVRTGYEKGCLVGNAL 419

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           V +  + G   EA DV   +  K D   W ++L G   HG
Sbjct: 420 VGMYCKCGCIDEAYDVFQGVQHK-DIVSWNTMLAGYARHG 458



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           DP++   +  +  + + G+ + +  VF+ MP  + VS+ ++I+GY +N     A + F+ 
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDK 89

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +       D   +  +LT       +      F S+ EK  +++ A     ++    RSG
Sbjct: 90  M----PHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNA-----MLSGYVRSG 140

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              EA DV  +MP K +   W  LL      G L+ A+R  E+
Sbjct: 141 HVDEARDVFDRMPHK-NSISWNGLLAAYVRSGRLEEARRLFES 182


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/477 (37%), Positives = 276/477 (57%), Gaps = 3/477 (0%)

Query: 1   AIDILCNQRRLKEALQILHQI-SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           A+  LC+ + L +A   LH+  S   P     +++ C    A  +GK+VH H    G   
Sbjct: 59  ALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLG 118

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            +F+   L+D YAK G++  A  +FDEM  +D    N +I+G++K G + +AR LFD M 
Sbjct: 119 DIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMV 178

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           +R + SW +MI+ Y    +  EAL L+R M + E +  N  T++++ S  +    L  GK
Sbjct: 179 RRTSASWNSMIACYAHGGEYQEALRLFRRMLS-EGARPNAITIATMFSICAKTGDLETGK 237

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
                I       + +V +AL +MY KC +I+EAR+ FD+M  RDVV+W+ MI  Y Q G
Sbjct: 238 WARSLIAEQDL-QNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNG 296

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           R  E   LF  +  +  +PN  T  GVL+ACA   ++ELG Q+  ++        S+  S
Sbjct: 297 RPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGS 356

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ MY+KCG+V  ++ VFN M    +++W S++ G A NG    A+  ++ + +   QP
Sbjct: 357 ALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQP 416

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           + I FV +LTACTHAGLVD+G+ +F  +K  H ++   +H ACIVDLL +SGR  EA   
Sbjct: 417 NEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKF 476

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           I  M ++P+  +W++LL  CR H +++LAK AA  L  +EP+N + YV ++NIYA A
Sbjct: 477 ICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADA 533


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/469 (38%), Positives = 278/469 (59%), Gaps = 16/469 (3%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL   +++      P+   ++S++  C     L E    H  +   GF+  VF+ N L
Sbjct: 148 QEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVGNGL 204

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAK G I  A+ LFD+M +RDV S+N MI+G+ + G +E A  LF E+P+RD  +W 
Sbjct: 205 VDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWN 264

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            M++GY +      A++L+  M   +N VS    ++  +   S  +  +L +     IM 
Sbjct: 265 TMMAGYAQCGDVENAVELFEKMPE-QNLVSWNTMIAGYVQNGSVKEAFKLFQ-----IMP 318

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
              + + + W+A+   + + G + EA ++F  M + +VVSW AMI  Y Q G+ E    L
Sbjct: 319 ---ERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKL 375

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F ++    ++PN  TFA VL ACA  A  E G + H  + R G+       + LV MY+K
Sbjct: 376 FGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAK 435

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG++E+++KVF+ M + D  S +++I GYA NG   ++LE FE +  +G +PD + FVGV
Sbjct: 436 CGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGV 495

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC HAGLVD+G QYF  +   + +T   +HY C++DLL R+G F EA D+I+KMP+KP
Sbjct: 496 LSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKP 555

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           D  +W SLL  CR H N+DL ++ A+ L  + P+NPA YV ++NIYA+A
Sbjct: 556 DADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAA 604



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 223/467 (47%), Gaps = 68/467 (14%)

Query: 5   LCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           LC Q RL+EAL IL  +      P  S Y SL+Q C   ++L + K +H+H+  + F+  
Sbjct: 39  LCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFE-- 96

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
                        C +IS                 N ++S + K GSL +AR +FDEMP 
Sbjct: 97  -------------CQDISLG---------------NKLVSIYVKLGSLVEARRVFDEMPV 128

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           ++  SWTAMI+ Y R+    EAL  +  MQ+      N FT +S+L A + ++ L    E
Sbjct: 129 KNVVSWTAMIAAYARHEHGQEALGFFYEMQDV-GIQPNHFTFASILPACTDLEVL---GE 184

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
            H  I++ GF+S+  V + L DMY K G I  AR++FDKM  RDVVSW AMI  Y Q G 
Sbjct: 185 FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGL 244

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACAD--HAAEELGK-----------QVHGYMT 287
            E+   LF E+ K  +       AG    C D  +A E   K            + GY+ 
Sbjct: 245 IEDALKLFQEIPKRDVITWNTMMAGYAQ-CGDVENAVELFEKMPEQNLVSWNTMIAGYVQ 303

Query: 288 -----------RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
                      +I  +    + +A++  +++ G VE + K+F  MP  ++VSW ++IAGY
Sbjct: 304 NGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY 363

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           +QNG  + AL+ F  +     +P+   F  VL AC    ++++G +  H +  + G    
Sbjct: 364 SQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEA-HEVVIRSGFQSD 422

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG----GC 439
                 +V + A+ G   +A  V  +M  +    L A ++G    GC
Sbjct: 423 VLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGC 469



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 176/323 (54%), Gaps = 21/323 (6%)

Query: 141 EALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWS 198
           EAL + + M   EN +  +  T  S+L      + L   K +H ++++T F+  ++ + +
Sbjct: 47  EALHILQDM--VENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGN 104

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
            L  +Y K GS+ EAR++FD+M  ++VVSWTAMI  Y +    +E    F E+   GI+P
Sbjct: 105 KLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQP 164

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N FTFA +L AC D   E LG + H  + + G++   F  + LV MY+K G +E ++++F
Sbjct: 165 NHFTFASILPACTD--LEVLG-EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELF 221

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + MP+ D+VSW ++IAGY QNG+ + AL+ F+ + K     D I +  ++      G V+
Sbjct: 222 DKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR----DVITWNTMMAGYAQCGDVE 277

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             ++ F  + E++ +++       ++    ++G   EA  +   MP + +   W +++ G
Sbjct: 278 NAVELFEKMPEQNLVSWNT-----MIAGYVQNGSVKEAFKLFQIMPER-NVISWNAVISG 331

Query: 439 CRIHGNLDLAKRAAEALFEIEPE 461
              +G ++ A +    LF+  PE
Sbjct: 332 FAQNGQVEEALK----LFKTMPE 350


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 177/499 (35%), Positives = 287/499 (57%), Gaps = 34/499 (6%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +K  L ++ +   PS  + ++++  C    A   G+KVHS +   G    V ++N +L M
Sbjct: 148 VKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYM 207

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y KCG+   A+ +F+ M+ R   S+N M+S +T  G ++ A ++F+ M +R   SW A+I
Sbjct: 208 YGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAII 267

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +GY +      AL  +  M    +   ++FT++SVLSA + ++ L++GK++H YI+RTG 
Sbjct: 268 AGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGM 327

Query: 191 DSDEVVWSALSDMYGKCGSI---------------------------------NEARQIF 217
                + +AL   Y K GS+                                  +AR++F
Sbjct: 328 PYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVF 387

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D M +RDV++WTAMI  Y Q G+ +E   LF  +I+SG  PN+ T A VL+ACA  A   
Sbjct: 388 DVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLG 447

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGY 336
            GKQ+H    R   +     ++A++ +Y++ G+V  +++VF+ +  R + V+WTS+I   
Sbjct: 448 YGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVAL 507

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQ+G+ ++A+  FE +L+ G +PD + ++GV +ACTHAG +DKG +Y+  +  +HG+   
Sbjct: 508 AQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPE 567

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
             HYAC+VDLLAR+G   EA + I +MP+ PD  +W SLL  CR+  N DLA+ AAE L 
Sbjct: 568 MSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLL 627

Query: 457 EIEPENPATYVTMANIYAS 475
            I+P+N   Y  +AN+Y++
Sbjct: 628 SIDPDNSGAYSALANVYSA 646



 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 229/490 (46%), Gaps = 81/490 (16%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN----ISDAQTLF 84
           ++ L+Q  +       G+ +H+H   +G     ++ N LL  YA+ G       +A+ LF
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLF 87

Query: 85  DEM--QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           D++    R+  ++N+++S + K G L  AR +F +MP+RD  SWT M+ G  R  +  +A
Sbjct: 88  DDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDA 147

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +  +  M   E    ++F L++VLS+ +A +   +G+++H ++++ G  S   V +++  
Sbjct: 148 VKTFLDMVG-EGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLY 206

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE------------ 250
           MYGKCG    AR +F++M  R   SW AM+  Y  +GR +   ++F              
Sbjct: 207 MYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAI 266

Query: 251 --------------------LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
                               L  S + P+ FT   VL+ACA+    ++GKQ+H Y+ R G
Sbjct: 267 IAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 291 YDPYSFAASALVHMYSKCGNVENSKK---------------------------------V 317
               S   +AL+  Y+K G+VE +++                                 V
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREV 386

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+ M   D+++WT++I GY QNG  D+A+E F  +++SG +P+      VL+AC     +
Sbjct: 387 FDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYL 446

Query: 378 DKGLQY----FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
             G Q       S++E+      A     I+ + ARSG    A  V  ++  + +   W 
Sbjct: 447 GYGKQIHCRAIRSLQEQSVSVSNA-----IITVYARSGSVPLARRVFDQICWRKETVTWT 501

Query: 434 SLLGGCRIHG 443
           S++     HG
Sbjct: 502 SMIVALAQHG 511



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 12/211 (5%)

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-PYS----FAA 298
           G A+ +  +K+G+  +A+    +L+    +A   +G+       R+  D PY+    F  
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSY---YARAGVGRGCFHEARRLFDDIPYARRNAFTW 100

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++L+ MY+K G + +++ VF  MP  D VSWT ++ G  + G    A++ F  ++  G  
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLA 160

Query: 359 PDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           P   +   VL++C  A    +G+ +  HS   K GL+        ++ +  + G    A 
Sbjct: 161 PSQFMLTNVLSSC--AATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETAR 218

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            V  +M ++ +   W +++      G +DLA
Sbjct: 219 AVFERMKVRSESS-WNAMVSLYTHQGRMDLA 248


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/504 (37%), Positives = 280/504 (55%), Gaps = 38/504 (7%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R ++A++I   +      P+    ++++  C    +   GKKVHS +   G    V ++N
Sbjct: 87  RFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVAN 146

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LL+MYAK G++  A+ +FD M+ R+  S+N MIS     G ++ A   F+ + +RD  S
Sbjct: 147 SLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVS 206

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W +MI+G  ++    EAL  +  +    +   ++F+L+S LSA + ++ L  GK+IHGYI
Sbjct: 207 WNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYI 266

Query: 186 MRTGFDSDEVVWSALSDMYGKC---------------------------------GSINE 212
           +RT FD+   V +AL  MY K                                  G I  
Sbjct: 267 VRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITP 326

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           ARQIF+ + D DVV+WTAMI  Y Q G   +   +F  ++  G RPN+FT A +L+A + 
Sbjct: 327 ARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSS 386

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-DLVSWTS 331
             +   GKQ+H    R G        +AL  MY+K G++  ++KVFN + +  D VSWTS
Sbjct: 387 VTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTS 446

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I   AQ+G+ ++A+E FE +L  G +PDHI +VGVL+ACTH GLV++G  YF  +K  H
Sbjct: 447 MIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVH 506

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            +  T  HYAC+VDL  R+G   EA   +  MPM+PD   W SLL  C+++ N+DLAK A
Sbjct: 507 KIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVA 566

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           AE L  IEP N   Y  +AN+Y+S
Sbjct: 567 AERLLLIEPNNSGAYSALANVYSS 590



 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 239/483 (49%), Gaps = 78/483 (16%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
           G    V++ N L+++YAK G   DA  LF+EM  +   S+NT++SG+ K G LE+A  +F
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVF 64

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
           D +P RD+ SWT +I GY +  +  +A+ ++  M   +  +  +FTL++VL++ +A    
Sbjct: 65  DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK-DKVLPTQFTLTNVLASCAATGSR 123

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM--------------- 220
            +GK++H ++++ G  +   V ++L +MY K G +  A+ +FD+M               
Sbjct: 124 GIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLH 183

Query: 221 -----VD-----------RDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTF 263
                VD           RD+VSW +MI    Q G   E    FS ++K + ++P+ F+ 
Sbjct: 184 MNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSL 243

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE----------- 312
           A  L+ACA+      GKQ+HGY+ R  +D      +AL+ MY+K G VE           
Sbjct: 244 ASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGI 303

Query: 313 ----------------------NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                                  ++++FN +  PD+V+WT++I GY QNG+ + A+E F+
Sbjct: 304 SDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFK 363

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            ++  G +P+      +L+A +    ++ G Q  H+   + G   +      +  + A++
Sbjct: 364 TMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQ-IHASAIRSGEALSPSVGNALTTMYAKA 422

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPENPA 464
           G  + A  V + +    D   W S++     HG   L + A E LFE      I+P++  
Sbjct: 423 GSINGARKVFNLLRQNRDTVSWTSMIMALAQHG---LGEEAIE-LFEQMLTLGIKPDH-I 477

Query: 465 TYV 467
           TYV
Sbjct: 478 TYV 480



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 159/413 (38%), Gaps = 92/413 (22%)

Query: 6   CNQRRL-KEALQILHQI---SHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           CNQ     EALQ    I   +   P  +S  S +  C     L  GK++H ++  + F  
Sbjct: 214 CNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDA 273

Query: 60  GVFISNCLLDMYAKCG---------------------------------NISDAQTLFDE 86
              + N L+ MYAK G                                 +I+ A+ +F+ 
Sbjct: 274 SGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNS 333

Query: 87  MQERDVCSYNTMISGFTKGG----SLEQARNLFDEMPQRDNFSWTAMISGY-----VRYN 137
           +++ DV ++  MI G+ + G    ++E  + +  E P+ ++F+  AM+S       + + 
Sbjct: 334 LKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHG 393

Query: 138 QPIEALDLYRMMQNFENSVSNKFTL-----SSVLSAVSAIQCLRLGKEI----------- 181
           + I A  + R  +    SV N  T       S+  A      LR  ++            
Sbjct: 394 KQIHASAI-RSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALA 452

Query: 182 -HGY----------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-----VDRDV 225
            HG           ++  G   D + +  +       G + + R  FD M     +D  +
Sbjct: 453 QHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTL 512

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
             +  M+  + + G  +E +     +    + P+   +  +L++C  +   +L K     
Sbjct: 513 SHYACMVDLFGRAGLLQEAYKFVENM---PMEPDVIAWGSLLSSCKVYKNVDLAKVAAER 569

Query: 286 MTRIGYDPY-SFAASALVHMYSKCGNVENSKKV-----FNGMPRPDLVSWTSL 332
           +  I  +P  S A SAL ++YS CG  +++ K+       G+ +   +SW  +
Sbjct: 570 LLLI--EPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQI 620



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           M ++G     +  + L+++Y+K G   ++  +FN MP     SW ++++GYA+ G  +KA
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 346 LEYFEL-------------------------------LLKSGTQPDHIVFVGVLTACTHA 374
            + F+L                               ++K    P       VL +C   
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 375 GLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           G   +G+ +  HS   K GL         ++++ A++G    A+ V  +M ++ +   W 
Sbjct: 121 G--SRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWN 177

Query: 434 SLLGGCRIHGNLDLAKRAAEALFE 457
           +++      G +DLA    E L E
Sbjct: 178 AMISLHMNCGRVDLALAQFELLSE 201


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 181/477 (37%), Positives = 276/477 (57%), Gaps = 3/477 (0%)

Query: 1   AIDILCNQRRLKEALQILHQI-SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           A+  LC+ + L +A   LH+  S   P     +++ C    A  +GK+VH H    G   
Sbjct: 59  ALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLG 118

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            +F+   L+D YAK G++  A  +FDEM  +D    N +I+G++K G + +AR LFD M 
Sbjct: 119 DIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMV 178

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           +R + SW +MI+ Y    +  EAL L+R M + E +  N  T++++ S  +    L  GK
Sbjct: 179 RRTSASWNSMIACYAHGGEYQEALRLFRRMLS-EGARPNAITIATMFSICAKTGDLETGK 237

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
                I       + +V +AL +MY KC +I+EAR+ FD+M  RDVV+W+ MI  Y Q G
Sbjct: 238 WARSLIAEQDL-QNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNG 296

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           R  E   LF  +  +  +PN  T  GVL+ACA   ++ELG Q+  ++        S+  S
Sbjct: 297 RPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGS 356

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ MY+KCG+V  ++ VFN M    +++W S++ G A NG    A+  ++ + +   QP
Sbjct: 357 ALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQP 416

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           + I FV +LTACTHAGLVD+G+ +F  +K  H ++   +H ACIVDLL +SGR  EA   
Sbjct: 417 NEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKF 476

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           I  M ++P+  +W++LL  CR H +++LAK AA  L  +EP+N + YV ++NIYA A
Sbjct: 477 ICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADA 533


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 280/493 (56%), Gaps = 44/493 (8%)

Query: 26  PSIYSSLIQFCRQN--------RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
           P   SS++  C Q         RA   G+ +H+ +   GF     + N L+DMY KC  +
Sbjct: 242 PVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEM 301

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGS------------------------------ 107
            +A  +F+ +    + S+N +I+GF + GS                              
Sbjct: 302 DEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC 361

Query: 108 -----LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
                +  AR +FD++ +    +W  ++SGY +  Q  + ++L+R MQ+ +N   ++ TL
Sbjct: 362 IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQH-QNVQPDRTTL 420

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
           + +LS+ S +  L  G+++H   +R    +D  V S L DMY KCG I  AR IF+KM +
Sbjct: 421 AVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTE 480

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           RDVV W ++I         +E F  F ++ ++GI P   ++A ++N+C+  ++   G+Q+
Sbjct: 481 RDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQI 540

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H  + + GYD   +  SAL+ MY+KCGN+++++  F+ M   ++V+W  +I GYAQNG+ 
Sbjct: 541 HAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLG 600

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           DKA+E FE +L +  +PD + F+ VLT C+H+GLVDK + +F+S++  +G+   A+HY C
Sbjct: 601 DKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTC 660

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           ++D L R+GRF E E +I KMP K D  +W  LL  C +H N +L K AAE LF I+P+N
Sbjct: 661 LIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKN 720

Query: 463 PATYVTMANIYAS 475
           P+ YV ++NIYAS
Sbjct: 721 PSPYVLLSNIYAS 733



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 203/409 (49%), Gaps = 24/409 (5%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            F++N L+++Y++ G    A   F  +   +  SYN  +S   + G L+ AR+L   MP+
Sbjct: 43  TFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPR 102

Query: 121 RDNFSWTAMISGYVRY-NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           R+  SW  +IS   R      EA+++Y  M+  E  +   FTL+SVLSA   +  L  G+
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRA-EGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
             HG  ++ G D+++ V +AL  MY KCGS+ +A ++F  M   + VS+TAM+G   Q G
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTG 221

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE--------LGKQVHGYMTRIGY 291
             ++   LF+ + +SG+  +  + + VL ACA   A +        LG+ +H  + R G+
Sbjct: 222 SIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGF 281

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                  ++L+ MY+KC  ++ + KVF  +P   +VSW  LI G+ Q G   KA+E   L
Sbjct: 282 GSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSL 341

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           + ++G +P+ + +  +L +C  A  V      F  I      T+          LL+   
Sbjct: 342 MQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNT--------LLSGYC 393

Query: 412 RFHEAEDVI------SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
           +  + +D I          ++PD+   A +L  C   G LD  ++   A
Sbjct: 394 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSA 442



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 188/419 (44%), Gaps = 61/419 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    +S++  C    AL +G++ H      G     F+ N LL MY KCG++ DA  L
Sbjct: 139 PTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRL 198

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M   +  S+  M+ G  + GS++ A  LF  M                R   P++ +
Sbjct: 199 FYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARM---------------CRSGVPVDPV 243

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            +  ++     + +  ++++         +  RLG+ IH  ++R GF SD+ V ++L DM
Sbjct: 244 SVSSVLGACAQACATDYSVA---------RAFRLGQAIHALVVRKGFGSDQHVGNSLIDM 294

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  ++EA ++F+ +    +VSW  +I  + QEG   +   + S + ++G  PN  T+
Sbjct: 295 YTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTY 354

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + +L +C                                    K  +V +++ +F+ + R
Sbjct: 355 SNLLASCI-----------------------------------KARDVHSARAMFDKISR 379

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           P + +W +L++GY Q       +E F  +     QPD      +L++C+  G++D G Q 
Sbjct: 380 PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQ- 438

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            HS   +  L       + +VD+ ++ G+   A  + +KM  + D   W S++ G  IH
Sbjct: 439 VHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER-DVVCWNSIISGLTIH 496



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 15/199 (7%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA     Q+      P+ S Y+S+I  C +  ++  G+++H+ +   G+   V++ + L
Sbjct: 500 KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSAL 559

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDN 123
           +DMYAKCGN+ DA+  FD M  +++ ++N MI G+ + G  ++A  LF+ M     + D 
Sbjct: 560 IDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 619

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--EI 181
            ++ A+++G        +A+  +  M+N    +      + ++ A+      R G+  E+
Sbjct: 620 VTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALG-----RAGRFVEV 674

Query: 182 HGYIMRTGFDSDEVVWSAL 200
              I +     D ++W  L
Sbjct: 675 EALIHKMPCKDDPIIWEVL 693


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 281/466 (60%), Gaps = 14/466 (3%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++EA +I  Q+   +   ++ L+    QN  +E+ ++    L  S     +   NCL+  
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGG 224

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y +   + DA++LFD M  RD  S+N MI+G+ + G L +AR LF+E+P RD F+WTAM+
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMV 284

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SG+V+     EA  ++  M        N+ + +++++     Q +   +E+   +     
Sbjct: 285 SGFVQNGMLDEATRIFEEMPE-----KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNT 339

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            S    W+ +   Y +CG+I++A+ +FD+M  RD +SW AMI  Y Q G+ EE   LF +
Sbjct: 340 SS----WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIK 395

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + + G   N    A  L++CA+ AA ELGKQ+HG + + G+     A +AL+ MY KCG+
Sbjct: 396 MKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +E +  VF  +   D+VSW ++IAGYA++G   +AL  FE + K   +PD +  VGVL+A
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSA 514

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H GLVDKG++YF+S+ + +G+T  A HY C++DLL R+GR  EA +++  MP  PD  
Sbjct: 515 CSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            W +LLG  RIHG+ +L ++AAE +FE+EP+N   YV ++N+YA++
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 224/468 (47%), Gaps = 56/468 (11%)

Query: 12  KEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           + AL + + +   S   Y+++I     N   +  +KV   +        +   N +L  Y
Sbjct: 77  ESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRD----LISWNVMLSGY 132

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
            K GN+S A+ LF++M E+DV S+N M+SGF + G +E+AR +FD+M  ++  SW  ++S
Sbjct: 133 VKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLS 192

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
            YV+  +  +A  L+    ++E               + +  CL     + GY+ +   D
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWE---------------IVSWNCL-----MGGYVRKKRLD 232

Query: 192 S-----------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                       D++ W+ +   Y + G ++EAR++F+++  RDV +WTAM+  + Q G 
Sbjct: 233 DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGM 292

Query: 241 REEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
            +E   +F E+  K+ +  NA   AG + +     A EL  Q+    T         + +
Sbjct: 293 LDEATRIFEEMPEKNEVSWNAM-IAGYVQSQQIEKARELFDQMPSRNTS--------SWN 343

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            +V  Y++CGN++ +K +F+ MP+ D +SW ++I+GYAQ+G  ++AL  F  + + G   
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL 403

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           +       L++C     ++ G Q  H    K G          ++ +  + G   EA DV
Sbjct: 404 NRSALACALSSCAEIAALELGKQ-LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDV 462

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE-----IEPEN 462
              +  K D   W +++ G   HG      + A ALFE     I+P++
Sbjct: 463 FEDITEK-DIVSWNTMIAGYARHG----FGKEALALFESMKMTIKPDD 505



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 181/368 (49%), Gaps = 32/368 (8%)

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
           +++N    +   D   W   IS Y+R  Q   AL ++  M+   ++V+    +S  LS  
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRR-RSTVTYNAMISGYLSN- 104

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           +   C R        +     D D + W+ +   Y K G+++ AR +F++M ++DVVSW 
Sbjct: 105 NKFDCAR-------KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWN 157

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           AM+  + Q G  EE   +F +++      N  ++ G+L+A   +   E  +++  + +++
Sbjct: 158 AMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRL--FDSKM 211

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
            ++  S+  + L+  Y +   +++++ +F+ MP  D +SW  +I GYAQNG+  +A   F
Sbjct: 212 DWEIVSW--NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF 269

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           E L       D   +  +++     G++D+  + F  + EK+ +++ A     ++    +
Sbjct: 270 EEL----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNA-----MIAGYVQ 320

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA-TYVT 468
           S +  +A ++  +MP + +   W +++ G    GN+D AK     LF+  P+    ++  
Sbjct: 321 SQQIEKARELFDQMPSR-NTSSWNTMVTGYAQCGNIDQAK----ILFDEMPQRDCISWAA 375

Query: 469 MANIYASA 476
           M + YA +
Sbjct: 376 MISGYAQS 383


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/488 (37%), Positives = 291/488 (59%), Gaps = 42/488 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SSLI  C   ++L+ GK +HS L  +      F++N L+D+Y+KCG        FD++ 
Sbjct: 81  FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 140

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            +   ++NT++S ++K G   QA  LFDEMPQR+  S+ ++ISG  R+    EA+  +R 
Sbjct: 141 NKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFRE 200

Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           MQN    +  ++FTL S++S  S +  ++  +++HG     GF ++ ++ +AL D YGKC
Sbjct: 201 MQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKC 260

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRY------------FQE----------------- 238
           G  N +  +F  MV++D VSWT+M+  Y            F E                 
Sbjct: 261 GEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFV 320

Query: 239 --GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-----Y 291
             GR  E   +F ++IK G+ P A TF  VL+ACA  A    GKQVH  + R       +
Sbjct: 321 KNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLF 380

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFE 350
           + Y F  +AL+ MY+KCG++++++ +F  M    D+VSW +LI G+AQNG  + +L  F+
Sbjct: 381 NVYVF--NALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFD 438

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +++S  +P+H+ F+GVL+AC HAGLV+ GL+   S++ ++G+   ++HYA ++DLL R 
Sbjct: 439 RMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRK 498

Query: 411 GRFHEAEDVISKMPMKPDKF--LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
            R  EA  +I K+P +      +W ++LGGCR+HGNL+LA++AAEALF +EPEN   YV 
Sbjct: 499 NRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPENTGRYVM 558

Query: 469 MANIYASA 476
           ++NIYA++
Sbjct: 559 LSNIYAAS 566



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 44/236 (18%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHL---KSSGFKPGVF 62
           R  EAL++ HQ+      P    + S++  C     +  GK+VH  +   +SS     V+
Sbjct: 324 RCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVY 383

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           + N L+DMYAKCG++  A+ LF+ M   +DV S+NT+I+GF + G  E +  +FD M   
Sbjct: 384 VFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRM--- 440

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                             IE+           N   N  T   VLSA +    +  G E+
Sbjct: 441 ------------------IES-----------NIEPNHVTFLGVLSACNHAGLVNAGLEL 471

Query: 182 HGYI-MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM---VDRDVVSWTAMIG 233
              +  R G       ++ L D+ G+   + EA  + +K+   +   +  W A++G
Sbjct: 472 LDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLG 527


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/466 (37%), Positives = 280/466 (60%), Gaps = 14/466 (3%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++EA +I  Q+   +   ++ L+    QN  +E+ ++    L  S     +   NCL+  
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGG 224

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y +   + DA++LFD M  RD  S+N MI+G+ + G L +AR LF+E+P RD F+WTAM+
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMV 284

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SG+V+     EA  ++  M        N+ + +++++     Q +   +E+   +     
Sbjct: 285 SGFVQNGMLDEATRIFEEMPE-----KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNT 339

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            S    W+ +   Y +CG+I++A+ +FD+M  RD +SW AMI  Y Q G+ EE   LF +
Sbjct: 340 SS----WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIK 395

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + + G   N    A  L++CA+ AA ELGKQ+HG + + G+     A +AL+ MY KCG+
Sbjct: 396 MKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +E +  VF  +   D+VSW ++IAGYA++G   +AL  FE + K   +PD +  VGVL+A
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSA 514

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H G VDKG++YF+S+ + +G+T  A HY C++DLL R+GR  EA +++  MP  PD  
Sbjct: 515 CSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            W +LLG  RIHG+ +L ++AAE +FE+EP+N   YV ++N+YA++
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 224/468 (47%), Gaps = 56/468 (11%)

Query: 12  KEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           + AL + + +   S   Y+++I     N   +  +KV   +        +   N +L  Y
Sbjct: 77  ESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRD----LISWNVMLSGY 132

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
            K GN+S A+ LF++M E+DV S+N M+SGF + G +E+AR +FD+M  ++  SW  ++S
Sbjct: 133 VKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLS 192

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
            YV+  +  +A  L+    ++E               + +  CL     + GY+ +   D
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWE---------------IVSWNCL-----MGGYVRKKRLD 232

Query: 192 S-----------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                       D++ W+ +   Y + G ++EAR++F+++  RDV +WTAM+  + Q G 
Sbjct: 233 DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGM 292

Query: 241 REEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
            +E   +F E+  K+ +  NA   AG + +     A EL  Q+    T         + +
Sbjct: 293 LDEATRIFEEMPEKNEVSWNAM-IAGYVQSQQIEKARELFDQMPSRNTS--------SWN 343

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            +V  Y++CGN++ +K +F+ MP+ D +SW ++I+GYAQ+G  ++AL  F  + + G   
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL 403

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           +       L++C     ++ G Q  H    K G          ++ +  + G   EA DV
Sbjct: 404 NRSALACALSSCAEIAALELGKQ-LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDV 462

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE-----IEPEN 462
              +  K D   W +++ G   HG      + A ALFE     I+P++
Sbjct: 463 FEDITEK-DIVSWNTMIAGYARHG----FGKEALALFESMKMTIKPDD 505



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 181/368 (49%), Gaps = 32/368 (8%)

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
           +++N    +   D   W   IS Y+R  Q   AL ++  M+   ++V+    +S  LS  
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRR-RSTVTYNAMISGYLSN- 104

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           +   C R        +     D D + W+ +   Y K G+++ AR +F++M ++DVVSW 
Sbjct: 105 NKFDCAR-------KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWN 157

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           AM+  + Q G  EE   +F +++      N  ++ G+L+A   +   E  +++  + +++
Sbjct: 158 AMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRL--FDSKM 211

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
            ++  S+  + L+  Y +   +++++ +F+ MP  D +SW  +I GYAQNG+  +A   F
Sbjct: 212 DWEIVSW--NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF 269

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           E L       D   +  +++     G++D+  + F  + EK+ +++ A     ++    +
Sbjct: 270 EEL----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNA-----MIAGYVQ 320

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA-TYVT 468
           S +  +A ++  +MP + +   W +++ G    GN+D AK     LF+  P+    ++  
Sbjct: 321 SQQIEKARELFDQMPSR-NTSSWNTMVTGYAQCGNIDQAK----ILFDEMPQRDCISWAA 375

Query: 469 MANIYASA 476
           M + YA +
Sbjct: 376 MISGYAQS 383


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 280/455 (61%), Gaps = 3/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  +++ C +++A +EG+++H H+   G    +++   L+ MY + G + DA  +
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+   RDV SY  +I G+   G +E A+ LFDE+P +D  SW AMISGY       EAL
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +V+SA +    + LG+++H +I   GF S+  + +AL D+
Sbjct: 252 ELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 310

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+++  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 311 YSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 370

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E + +VFN +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  D + + F  + K G QPD I FVG+L+AC+H+G++D G 
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F ++ + + +T   +HY C++DLL  SG F EAE++I+ M M+PD  +W SLL  C++
Sbjct: 491 HIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKM 550

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++L +  AE L +IEPENP +YV ++NIYASA
Sbjct: 551 HGNVELGESFAENLIKIEPENPGSYVLLSNIYASA 585



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 165/354 (46%), Gaps = 47/354 (13%)

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD---MYGKCGSI 210
           +S+ N  +LS +L     +Q LR+   IH  +++ G  +     S L +   +      +
Sbjct: 29  DSIRNHPSLS-LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGL 84

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A  +F  + + +++ W  M   +           L+  +I  G+ PN++TF  VL +C
Sbjct: 85  PYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A   A + G+Q+HG++ ++G D   +  ++L+ MY + G +E++ KVF+  P  D+VS+T
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT 204

Query: 331 SLIAGYAQNG-----------MPDK--------------------ALEYFELLLKSGTQP 359
           +LI GYA  G           +P K                    ALE F+ ++K+  +P
Sbjct: 205 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 264

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D    V V++AC  +G ++ G Q  H   + HG          ++DL ++ G    A  +
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTM 469
             ++P K D   W +L+GG   + +++L K A     E L   E  N  T +++
Sbjct: 324 FERLPYK-DVISWNTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 8/196 (4%)

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVEN---SKKVFNGMPRPDLVSWTSLIAGYAQ 338
           +H  M +IG    ++A S L+       + E    +  VF  +  P+L+ W ++  G+A 
Sbjct: 52  IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +  P  AL+ +  ++  G  P+   F  VL +C  +    +G Q  H    K G      
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG-QQIHGHVLKLGCDLDLY 170

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
            +  ++ +  ++GR  +A  V  K P + D   + +L+ G    G ++ A++  +   EI
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHR-DVVSYTALIKGYASRGYIENAQKLFD---EI 226

Query: 459 EPENPATYVTMANIYA 474
             ++  ++  M + YA
Sbjct: 227 PVKDVVSWNAMISGYA 242


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 284/493 (57%), Gaps = 44/493 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   +  S I+ C   RAL+ G+++H+   +SGF     +++ L  MY KC  I DA+ L
Sbjct: 102 PDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKL 161

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQP 139
           FD M +RDV  ++ MI+G+++ G +E+A+ LF EM     + +  SW  M++G+      
Sbjct: 162 FDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFY 221

Query: 140 IEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
            EA+ ++RMM  Q F    S   T+S VL AV  ++ + +G ++HGY+++ G  SD+ V 
Sbjct: 222 DEAVGMFRMMLVQGFWPDGS---TVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVV 278

Query: 198 SALSDMYGKCGSINEARQIFDK--------------------MVDR-------------- 223
           SA+ DMYGKCG + E  ++FD+                    MVD               
Sbjct: 279 SAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKME 338

Query: 224 -DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
            +VV+WT++I    Q G+  E   LF ++   G+ PNA T   ++ AC + +A   GK++
Sbjct: 339 LNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEI 398

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H +  R G     +  SAL+ MY+KCG ++ +++ F+ M   +LVSW +++ GYA +G  
Sbjct: 399 HCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKA 458

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
            + +E F ++L+SG +PD + F  VL+AC   GL ++G + ++S+ E+HG+    +HYAC
Sbjct: 459 KETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYAC 518

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           +V LL+R G+  EA  +I +MP +PD  +W +LL  CR+H NL L + AAE LF +EP N
Sbjct: 519 LVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTN 578

Query: 463 PATYVTMANIYAS 475
           P  Y+ ++NIYAS
Sbjct: 579 PGNYILLSNIYAS 591



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 193/455 (42%), Gaps = 77/455 (16%)

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQAR---NLFDEM 118
           +S CL    A       A  L   +    D     +++S +    SL   +    L   +
Sbjct: 5   LSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P    FS++++I  + R +     L  +  +      + + F L S + + ++++ L  G
Sbjct: 65  PHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLR-LIPDAFLLPSAIKSCASLRALDPG 123

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +++H +   +GF +D +V S+L+ MY KC  I +AR++FD+M DRDVV W+AMI  Y + 
Sbjct: 124 QQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRL 183

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVL-----NACADHAAEE---------------- 277
           G  EE   LF E+   G+ PN  ++ G+L     N   D A                   
Sbjct: 184 GLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTV 243

Query: 278 --------------LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF----- 318
                         +G QVHGY+ + G     F  SA++ MY KCG V+   +VF     
Sbjct: 244 SCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEE 303

Query: 319 ---------------NGMPRP---------------DLVSWTSLIAGYAQNGMPDKALEY 348
                          NGM                  ++V+WTS+IA  +QNG   +ALE 
Sbjct: 304 MEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALEL 363

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  +   G +P+ +    ++ AC +   +  G +  H    + G+       + ++D+ A
Sbjct: 364 FRDMQAYGVEPNAVTIPSLIPACGNISALMHG-KEIHCFSLRRGIFDDVYVGSALIDMYA 422

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           + GR   A     KM    +   W +++ G  +HG
Sbjct: 423 KCGRIQLARRCFDKMS-ALNLVSWNAVMKGYAMHG 456



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 144/307 (46%), Gaps = 18/307 (5%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR---QIFD 218
           LS  LS+ +A   L   ++ H  I+R    SD  + ++L   Y    S++  +    +  
Sbjct: 5   LSQCLSSSTA--SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSS 62

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            +    + S++++I  + +          FS L    + P+AF     + +CA   A + 
Sbjct: 63  HLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDP 122

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G+Q+H +    G+   S  AS+L HMY KC  + +++K+F+ MP  D+V W+++IAGY++
Sbjct: 123 GQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSR 182

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI------KEKHG 392
            G+ ++A E F  +   G +P+ + + G+L    + G  D+ +  F  +       +   
Sbjct: 183 LGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGST 242

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           ++       C+ D++  +    +    + K  +  DKF+ +++L    ++G     K  +
Sbjct: 243 VSCVLPAVGCLEDVVVGA----QVHGYVIKQGLGSDKFVVSAMLD---MYGKCGCVKEMS 295

Query: 453 EALFEIE 459
               E+E
Sbjct: 296 RVFDEVE 302


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  344 bits (883), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 171/412 (41%), Positives = 251/412 (60%), Gaps = 9/412 (2%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+  Y + G +S+A+ LFD M  RDV S+N M+SG+ + G + +AR LFD  P RD F
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA++SGY +     EA  ++  M        N  + +++++A    + +   KE+   
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMPE-----RNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +      S    W+ +   Y + G + EA+ +FD M  +D VSW AM+  Y Q G  EE 
Sbjct: 312 MPCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF E+ + G   N   FA VL+ CAD AA E G Q+HG + R GY    F  +AL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCGN+E+++  F  M   D+VSW ++IAGYA++G   +ALE F+++  + T+PD I  
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL AC+H+GLV+KG+ YF+S+    G+T   +HY C++DLL R+GR  EA D++  MP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +PD  +W +LLG  RIH N +L + AAE +FE+EPEN   YV ++NIYAS+
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASS 599



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 196/451 (43%), Gaps = 85/451 (18%)

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG---------- 106
            +P V  SN  +  + + G ++DA+ LF  M  R   +YN M++G++  G          
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 107 ---------------------SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
                                SL  AR LFDEMP RD+ ++  MIS +  +        L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG-------L 146

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
             + +++ +    K  +S      + ++  R+ +    +  RT +D   + W+AL   Y 
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV--ISWNALMSGYV 204

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G ++EAR++FD+M  RDVVSW  M+  Y + G   E   LF     + +R + FT+  
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---AAPVR-DVFTWTA 260

Query: 266 VLNACADHAAEELGKQVH----------------GYMTRIGYD---------PYSFAAS- 299
           V++  A +   E  ++V                  Y+ R   D         P    AS 
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 300 -ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
             ++  Y++ G +E +K VF+ MP+ D VSW +++A Y+Q G  ++ L+ F  + + G  
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 380

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-YACIVD--LLA---RSGR 412
            +   F  VL+ C     ++ G+Q        HG    A +   C V   LLA   + G 
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQL-------HGRLIRAGYGVGCFVGNALLAMYFKCGN 433

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +A +   +M  + D   W +++ G   HG
Sbjct: 434 MEDARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 36/210 (17%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S ++ ++  C    ALE G ++H  L  +G+  G F+ N LL MY KCGN+ DA+  F+E
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M+ERDV S+NTMI+G+ + G  ++A  +FD                              
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFD------------------------------ 473

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT--GFDSDEVVWSALSDMY 204
             M    ++  +  TL  VL+A S    +  G   + Y M    G  +    ++ + D+ 
Sbjct: 474 --MMRTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSMHHDFGVTAKPEHYTCMIDLL 530

Query: 205 GKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           G+ G + EA  +   M  + D   W A++G
Sbjct: 531 GRAGRLAEAHDLMKDMPFEPDSTMWGALLG 560



 Score = 38.5 bits (88), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 36/210 (17%)

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           +P    ++  +  + + G V +++++F  MPR    ++ +++AGY+ NG    A   F  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 352 LLKSGTQPDHIVFVGVLTA-CTHAGLVD-KGL------------QYFHSIKEKHGLTYTA 397
           +     +PD+  +  +L A    + L D +GL                S    HGL   A
Sbjct: 95  I----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 398 DHYACIVD---------LLA---RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            HY  +           +LA   R+GR  EA  + +    + D   W +L+ G    G +
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR-TEWDVISWNALMSGYVQWGKM 209

Query: 446 DLAKRAAEALFEIEP-ENPATYVTMANIYA 474
             A+     LF+  P  +  ++  M + YA
Sbjct: 210 SEARE----LFDRMPGRDVVSWNIMVSGYA 235


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 171/412 (41%), Positives = 251/412 (60%), Gaps = 9/412 (2%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+  Y + G +S+A+ LFD M  RDV S+N M+SG+ + G + +AR LFD  P RD F
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA++SGY +     EA  ++  M        N  + +++++A    + +   KE+   
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMPE-----RNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +      S    W+ +   Y + G + EA+ +FD M  +D VSW AM+  Y Q G  EE 
Sbjct: 312 MPCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF E+ + G   N   FA VL+ CAD AA E G Q+HG + R GY    F  +AL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCGN+E+++  F  M   D+VSW ++IAGYA++G   +ALE F+++  + T+PD I  
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL AC+H+GLV+KG+ YF+S+    G+T   +HY C++DLL R+GR  EA D++  MP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +PD  +W +LLG  RIH N +L + AAE +FE+EPEN   YV ++NIYAS+
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASS 599



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 197/451 (43%), Gaps = 85/451 (18%)

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG---------- 106
            +P V  SN  +  + + G ++DA+ LF  M  R   +YN M++G++  G          
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 107 ---------------------SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
                                SL  AR LFDEMP RD+ ++  MIS +  +        L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG-------L 146

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
             + +++ +    K  +S      + ++  R+ +    +  RT +D+  + W+AL   Y 
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDA--ISWNALMSGYV 204

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G ++EAR++FD+M  RDVVSW  M+  Y + G   E   LF     + +R + FT+  
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---AAPVR-DVFTWTA 260

Query: 266 VLNACADHAAEELGKQVH----------------GYMTRIGYD---------PYSFAAS- 299
           V++  A +   E  ++V                  Y+ R   D         P    AS 
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 300 -ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
             ++  Y++ G +E +K VF+ MP+ D VSW +++A Y+Q G  ++ L+ F  + + G  
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 380

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-YACIVD--LLA---RSGR 412
            +   F  VL+ C     ++ G+Q        HG    A +   C V   LLA   + G 
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQL-------HGRLIRAGYGVGCFVGNALLAMYFKCGN 433

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +A +   +M  + D   W +++ G   HG
Sbjct: 434 MEDARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 36/210 (17%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S ++ ++  C    ALE G ++H  L  +G+  G F+ N LL MY KCGN+ DA+  F+E
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M+ERDV S+NTMI+G+ + G  ++A  +FD                              
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFD------------------------------ 473

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT--GFDSDEVVWSALSDMY 204
             M    ++  +  TL  VL+A S    +  G   + Y M    G  +    ++ + D+ 
Sbjct: 474 --MMRTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSMHHDFGVTAKPEHYTCMIDLL 530

Query: 205 GKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           G+ G + EA  +   M  + D   W A++G
Sbjct: 531 GRAGRLAEAHDLMKDMPFEPDSTMWGALLG 560



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 36/210 (17%)

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           +P    ++  +  + + G V +++++F  MPR    ++ +++AGY+ NG    A   F  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 352 LLKSGTQPDHIVFVGVLTA-CTHAGLVD-KGL------------QYFHSIKEKHGLTYTA 397
           +     +PD+  +  +L A    + L D +GL                S    HGL   A
Sbjct: 95  I----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 398 DHYACIVD---------LLA---RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            HY  +           +LA   R+GR  EA  + +    + D   W +L+ G    G +
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR-TEWDAISWNALMSGYVQWGKM 209

Query: 446 DLAKRAAEALFEIEP-ENPATYVTMANIYA 474
             A+     LF+  P  +  ++  M + YA
Sbjct: 210 SEARE----LFDRMPGRDVVSWNIMVSGYA 235


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 171/412 (41%), Positives = 251/412 (60%), Gaps = 9/412 (2%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+  Y + G +S+A+ LFD M  RDV S+N M+SG+ + G + +AR LFD  P RD F
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA++SGY +     EA  ++  M        N  + +++++A    + +   KE+   
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMPE-----RNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +      S    W+ +   Y + G + EA+ +FD M  +D VSW AM+  Y Q G  EE 
Sbjct: 312 MPCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF E+ + G   N   FA VL+ CAD AA E G Q+HG + R GY    F  +AL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCGN+E+++  F  M   D+VSW ++IAGYA++G   +ALE F+++  + T+PD I  
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL AC+H+GLV+KG+ YF+S+    G+T   +HY C++DLL R+GR  EA D++  MP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +PD  +W +LLG  RIH N +L + AAE +FE+EPEN   YV ++NIYAS+
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASS 599



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 196/451 (43%), Gaps = 85/451 (18%)

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG---------- 106
            +P V  SN  +  + + G ++DA+ LF  M  R   +YN M++G++  G          
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 107 ---------------------SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
                                SL  AR LFDEMP RD+ ++  MIS +  +        L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG-------L 146

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
             + +++ +    K  +S      + ++  R+ +    +  RT +D   + W+AL   Y 
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV--ISWNALMSGYV 204

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G ++EAR++FD+M  RDVVSW  M+  Y + G   E   LF     + +R + FT+  
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---AAPVR-DVFTWTA 260

Query: 266 VLNACADHAAEELGKQVH----------------GYMTRIGYD---------PYSFAAS- 299
           V++  A +   E  ++V                  Y+ R   D         P    AS 
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 300 -ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
             ++  Y++ G +E +K VF+ MP+ D VSW +++A Y+Q G  ++ L+ F  + + G  
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 380

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-YACIVD--LLA---RSGR 412
            +   F  VL+ C     ++ G+Q        HG    A +   C V   LLA   + G 
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQL-------HGRLIRAGYGVGCFVGNALLAMYFKCGN 433

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +A +   +M  + D   W +++ G   HG
Sbjct: 434 MEDARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 36/210 (17%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S ++ ++  C    ALE G ++H  L  +G+  G F+ N LL MY KCGN+ DA+  F+E
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M+ERDV S+NTMI+G+ + G  ++A  +FD                              
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFD------------------------------ 473

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT--GFDSDEVVWSALSDMY 204
             M    ++  +  TL  VL+A S    +  G   + Y M    G  +    ++ + D+ 
Sbjct: 474 --MMRTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYSMHHDFGVTAKPEHYTCMIDLL 530

Query: 205 GKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           G+ G + EA  +   M  + D   W A++G
Sbjct: 531 GRAGRLAEAHDLMKDMPFEPDSTMWGALLG 560



 Score = 38.5 bits (88), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 31/184 (16%)

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           +P    ++  +  + + G V +++++F  MPR    ++ +++AGY+ NG    A   F  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 352 LLKSGTQPDHIVFVGVLTA-CTHAGLVD-KGL------------QYFHSIKEKHGLTYTA 397
           +     +PD+  +  +L A    + L D +GL                S    HGL   A
Sbjct: 95  I----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 398 DHYACIVD---------LLA---RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            HY  +           +LA   R+GR  EA  + +    + D   W +L+ G    G +
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR-TEWDVISWNALMSGYVQWGKM 209

Query: 446 DLAK 449
             A+
Sbjct: 210 SEAR 213


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 173/471 (36%), Positives = 279/471 (59%), Gaps = 2/471 (0%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           Q  L   L++L   + PS   +  +++ C    ++ EG+++H+H+   GF   +F+ N L
Sbjct: 75  QNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSL 134

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF-SW 126
           +DMY KC  +  A+  +D+M  RD  S+N++ISG+ + G +E+AR+LF+EMP R N   W
Sbjct: 135 IDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCW 194

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           TAMI+GY +    +E L L+R M    + V  N  T+  +LSA S +    +G+ +  +I
Sbjct: 195 TAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFI 254

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
                  + ++ +AL DMY KCG + +A +IFD +  +++ SW A+I    Q G  EE  
Sbjct: 255 DVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAI 314

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            L+  +    ++PN  T   VL+ACA   A ELG++VH Y+ R G D     A+ALV MY
Sbjct: 315 DLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMY 374

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG ++++  +F      D+  W ++I G A +G    +L  F  ++++G QP+ + F+
Sbjct: 375 AKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFI 434

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           GVL+AC H+GLV++G   F S+ +KHGL+   +HYAC+VDLL R+G   EA +++  M +
Sbjct: 435 GVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLI 494

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            PD  +W +LL  CRIH NL+LA + +E +   +  N    + ++NIYAS+
Sbjct: 495 PPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASS 545



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 189/372 (50%), Gaps = 37/372 (9%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
           S++ AR + D+ P   +FSW ++I  Y  +  P  +L LY  M       SN FT   VL
Sbjct: 42  SIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSN-FTFPFVL 100

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC------------------- 207
            A S +  +  G++IH +++R GF SD  V ++L DMY KC                   
Sbjct: 101 KACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEV 160

Query: 208 ------------GSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                       G + +AR +F++M + R+VV WTAMI  Y +EG   E  +LF +++ S
Sbjct: 161 SWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVS 220

Query: 255 G--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
              ++PNA T   +L+AC+     E+G+ +  ++        +   +AL+ MYSKCG+VE
Sbjct: 221 ADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVE 280

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            + ++F+G+   +L SW ++I G  Q G+ ++A++ +  +     +P+ I  V VL+AC 
Sbjct: 281 KAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACA 340

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
             G ++ G +  H    ++GL         +VD+ A+ G+  +A  +  K   K D  LW
Sbjct: 341 GLGALELGRE-VHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEK-DVALW 398

Query: 433 ASLLGGCRIHGN 444
            +++ G   HG+
Sbjct: 399 NAMILGLAYHGD 410



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 4/186 (2%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           +LS +     L    +IH   +  G      +   L D++    SI+ AR + D+     
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLH----SIDYARFVLDQTPSPT 57

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
             SW ++I  Y   G  +    L+ ++++S  +P+ FTF  VL AC+   +   G+Q+H 
Sbjct: 58  DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT 117

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           ++ R+G+    F  ++L+ MY KC  +++++  ++ M   D VSW S+I+GY Q G  +K
Sbjct: 118 HVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEK 177

Query: 345 ALEYFE 350
           A + FE
Sbjct: 178 ARDLFE 183



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 18/199 (9%)

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H      G    +     L+ ++S    ++ ++ V +  P P   SW SLI  Y  +G
Sbjct: 17  QIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPTDFSWNSLIRAYTVHG 72

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADH 399
            P  +L  +  +L+S T+P +  F  VL AC+  G V +G Q + H ++    L + +D 
Sbjct: 73  SPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLR----LGFGSDL 128

Query: 400 YAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           + C  ++D+  +  R   A +    M  + D+  W S++ G    G ++ A+     LFE
Sbjct: 129 FVCNSLIDMYCKCFRLDSARNFWDDMGFR-DEVSWNSIISGYVQWGQVEKARD----LFE 183

Query: 458 IEP--ENPATYVTMANIYA 474
             P   N   +  M N Y 
Sbjct: 184 EMPMRRNVVCWTAMINGYG 202



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 139/372 (37%), Gaps = 108/372 (29%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-- 59
           ID+      +++A +I   +S  +   ++++I  C Q   LEE   ++ H+K+   KP  
Sbjct: 270 IDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNE 329

Query: 60  ---------------------------------GVFISNCLLDMYAKCGNISDAQTLFDE 86
                                             V ++  L+DMYAKCG I DA  +F +
Sbjct: 330 ITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVK 389

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN-QPIEALDL 145
             E+DV  +N MI G    G    +  +F +M               VR   QP      
Sbjct: 390 TSEKDVALWNAMILGLAYHGDGRDSLAVFSQM---------------VRAGVQP------ 428

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
                       N  T   VLSA +           H  ++  G     V +S+++D +G
Sbjct: 429 ------------NDVTFIGVLSACN-----------HSGLVEEG----RVQFSSMADKHG 461

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
               ++   + +  MVD        ++GR    G  +E + L   ++   I P++  +  
Sbjct: 462 ----LSPKLEHYACMVD--------LLGR---AGHLKEAYELVQNML---IPPDSIIWGA 503

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG----- 320
           +L+AC  H   EL  ++   +     DP       L ++Y+  G  ++  +V        
Sbjct: 504 LLSACRIHRNLELADKISETIMA-SQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKR 562

Query: 321 MPRPDLVSWTSL 332
           + +P   SW  +
Sbjct: 563 IKKPSGCSWVEV 574


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  343 bits (881), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 171/412 (41%), Positives = 251/412 (60%), Gaps = 9/412 (2%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+  Y + G +S+A+ LFD M  RDV S+N M+SG+ + G + +AR LFD  P RD F
Sbjct: 72  NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 131

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA++SGY +     EA  ++  M        N  + +++++A    + +   KE+   
Sbjct: 132 TWTAVVSGYAQNGMLEEARRVFDAMPE-----RNAVSWNAMVAAYIQRRMMDEAKELFNM 186

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +      S    W+ +   Y + G + EA+ +FD M  +D VSW AM+  Y Q G  EE 
Sbjct: 187 MPCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 242

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF E+ + G   N   FA VL+ CAD AA E G Q+HG + R GY    F  +AL+ M
Sbjct: 243 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 302

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCGN+E+++  F  M   D+VSW ++IAGYA++G   +ALE F+++  + T+PD I  
Sbjct: 303 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 362

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL AC+H+GLV+KG+ YF+S+    G+T   +HY C++DLL R+GR  EA D++  MP
Sbjct: 363 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 422

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +PD  +W +LLG  RIH N +L + AAE +FE+EPEN   YV ++NIYAS+
Sbjct: 423 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASS 474



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 34/307 (11%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           VF    ++  YA+ G + +A+ +FD M ER+  S+N M++ + +   +++A+ LF+ MP 
Sbjct: 130 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC 189

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS----------------------- 157
           R+  SW  M++GY +     EA  ++  M   +++VS                       
Sbjct: 190 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ-KDAVSWAAMLAAYSQGGCSEETLQLFIE 248

Query: 158 --------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   N+   + VLS  + I  L  G ++HG ++R G+     V +AL  MY KCG+
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 308

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + +AR  F++M +RDVVSW  MI  Y + G  +E   +F  +  +  +P+  T  GVL A
Sbjct: 309 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 368

Query: 270 CADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLV 327
           C+     E G      M    G        + ++ +  + G +  +  +   MP  PD  
Sbjct: 369 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 428

Query: 328 SWTSLIA 334
            W +L+ 
Sbjct: 429 MWGALLG 435



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 36/231 (15%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C++  L+  +++       + S ++ ++  C    ALE G ++H  L  +G+  G F+ N
Sbjct: 238 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN 297

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LL MY KCGN+ DA+  F+EM+ERDV S+NTMI+G+ + G  ++A  +FD         
Sbjct: 298 ALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFD--------- 348

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                  M    ++  +  TL  VL+A S    +  G   + Y 
Sbjct: 349 -----------------------MMRTTSTKPDDITLVGVLAACSHSGLVEKGIS-YFYS 384

Query: 186 MRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           M    G  +    ++ + D+ G+ G + EA  +   M  + D   W A++G
Sbjct: 385 MHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLG 435


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  343 bits (881), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 178/499 (35%), Positives = 283/499 (56%), Gaps = 34/499 (6%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +K  L ++ +   PS    ++++  C    A   G+KVH  +   G    V ++N +L M
Sbjct: 332 VKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYM 391

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y KCG+   A+ +F+ MQ R V S+N M+S +T  G +E A ++F+ M +R   SW  +I
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTII 451

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +GY +      AL  +  M +  +   + FT++SVLSA + ++ L++GK++H YI+RTG 
Sbjct: 452 AGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGM 511

Query: 191 DSDEVVWSALSDMYGKCGSI---------------------------------NEARQIF 217
                + +AL   Y K GS+                                  +AR+IF
Sbjct: 512 PCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIF 571

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D M +RDV++WTAMI  Y Q G+ +E   LF  +I  G  PN+ T A VL+ACA  A  +
Sbjct: 572 DIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLD 631

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGY 336
            GKQ+H    R   +     ++A++ +Y++ G+V  +++VF+ +  R + ++WTS+I   
Sbjct: 632 YGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAM 691

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQ+G+ ++A+  FE +++ G +PDHI +VGVL+AC HAG VDKG +Y+  ++ +HG+   
Sbjct: 692 AQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQ 751

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
             HYAC+VDL AR+G   EA + I +MP+ PD  +W SLL  CR+  N DLA+ AA  L 
Sbjct: 752 MSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLL 811

Query: 457 EIEPENPATYVTMANIYAS 475
            I+P N   Y  +AN+Y++
Sbjct: 812 SIDPHNSGAYSALANVYSA 830



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 251/529 (47%), Gaps = 92/529 (17%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG----NISDAQTLF 84
           Y+ L+Q CR       G+ +H+H   +G     ++ N LL  YA  G       +A+ LF
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLF 271

Query: 85  DEM--QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           D++    R+  ++N+++S + K G L  A  +F EMP RD  SWT MI G  R  +  +A
Sbjct: 272 DDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDA 331

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +  +  M + E    ++FTL++VLS+ +A++   +G+++H ++++ G  S   V +++  
Sbjct: 332 VKTFLDMVS-EGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLY 390

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK--------- 253
           MYGKCG    AR +F++M  R V SW  M+  Y  +GR E   ++F  +++         
Sbjct: 391 MYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTI 450

Query: 254 -----------------------SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
                                  S + P+AFT   VL+ACA+    ++GKQ+H Y+ R G
Sbjct: 451 IAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 291 YDPYSFAASALVHMYSKCGNVENSKK---------------------------------V 317
               S   +AL+  Y+K G+VE +++                                 +
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREI 570

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+ M   D+++WT++I GY QNG  D+A+E F  ++  G +P+      VL+AC     +
Sbjct: 571 FDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYL 630

Query: 378 DKGLQY----FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           D G Q       S++E+      A     I+ + ARSG    A  V  ++  + +   W 
Sbjct: 631 DYGKQIHCKAIRSLQEQSVSVSNA-----IITVYARSGSVPLARRVFDQICWRKETITWT 685

Query: 434 SLLGGCRIHGNLDLAKRAAEALFE------IEPENPATYVTMANIYASA 476
           S++     HG   L ++A   LFE      ++P++  TYV + +  A A
Sbjct: 686 SMIVAMAQHG---LGEQAV-VLFEEMVRVGVKPDH-ITYVGVLSACAHA 729



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 189/425 (44%), Gaps = 91/425 (21%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S++  C   R L+ GK++HS++  +G      I N L+  YAK G++  A+ +
Sbjct: 478 PDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRI 537

Query: 84  FDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            D+  + + +V S+  ++ G+ K G  +QAR +FD M  RD  +WTAMI GY +  Q  E
Sbjct: 538 MDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDE 597

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A++L+R M        N  TL++VLSA +++  L  GK+IH   +R+  +    V +A+ 
Sbjct: 598 AMELFRSMI-LIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAII 656

Query: 202 DMYGKCGSINEARQIFDKMVDR-DVVSWTAMI---------------------------- 232
            +Y + GS+  AR++FD++  R + ++WT+MI                            
Sbjct: 657 TVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDH 716

Query: 233 -------------------GRYFQEGRREEGF-----------------ALFSE----LI 252
                               RY+++ + E G                   L +E    + 
Sbjct: 717 ITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQ 776

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKCGNV 311
           +  + P+   +  +L AC      +L +   G +  I  DP+ S A SAL ++YS CG  
Sbjct: 777 RMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSI--DPHNSGAYSALANVYSACGRW 834

Query: 312 ENSKKVF-----NGMPRPDLVSWTSLIAGYAQNGMPD-----------KALEYFELLLKS 355
            ++ +++      G+ +    SWT +       G  D           KA E +E + K+
Sbjct: 835 NDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKA 894

Query: 356 GTQPD 360
           G  PD
Sbjct: 895 GFVPD 899


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 168/471 (35%), Positives = 279/471 (59%), Gaps = 1/471 (0%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LC++  LK+A           PS++S L+Q C    +L  GK++HS + +SG     FIS
Sbjct: 31  LCSKGHLKQAFDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFIS 90

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL++Y+KCG +  A TLF  M  +++ S N +I+G+ + G    AR +FDEMP+R+  
Sbjct: 91  NHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVA 150

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +W AM++G +++    E L L+  M      + ++F L SVL   + ++ L  G+++HGY
Sbjct: 151 TWNAMVAGLIQFEFNEEGLGLFSRMNEL-GFLPDEFALGSVLRGCAGLRALVAGRQVHGY 209

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           + + GF+ + VV S+L+ MY KCGS+ E  ++   M  ++VV+W  +I    Q G  EE 
Sbjct: 210 VRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEV 269

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
              ++ +  +G RP+  TF  V+++C++ A    G+Q+H  + + G        S+L+ M
Sbjct: 270 LDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISM 329

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YS+CG +E S KVF      D+V W+S+IA Y  +G   +A++ F  + +   + + + F
Sbjct: 330 YSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTF 389

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           + +L AC+H GL +KG+++F  + EK+G+    +HY C+VDLL R G   EAE +I  MP
Sbjct: 390 LSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMP 449

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +K D   W +LL  C+IH   ++A+R +E +F ++P +P  YV ++NI+AS
Sbjct: 450 VKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHAS 500


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/477 (38%), Positives = 277/477 (58%), Gaps = 45/477 (9%)

Query: 43  EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN---------ISDAQTLFDEMQERDVC 93
           ++ +++H  +  SG      + N LL ++ KC +         ++ A+ LFDEM ERD  
Sbjct: 167 KQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDEL 226

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
           S+ TMI+G+ + G L+ AR   D M ++   +W AMISGYV +   +EAL+++R M    
Sbjct: 227 SWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMY-LL 285

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----GFDSDEVVWSALSDMYGKCGS 209
               ++FT +SVLSA +       GK++H YI+RT      D    V +AL+ +Y KCG 
Sbjct: 286 GIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGK 345

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGR----------------------------- 240
           ++EARQ+F++M  +D+VSW A++  Y   GR                             
Sbjct: 346 VDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQN 405

Query: 241 --REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              EE   LF+ +   G  P  + FAG + ACA  AA   G+Q+H  + R+G+D    A 
Sbjct: 406 GFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAG 465

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +AL+ MY+KCG VE +  +F  MP  D VSW ++IA   Q+G   +ALE FEL+LK    
Sbjct: 466 NALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDIL 525

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD I F+ VL+ C+HAGLV++G +YF S+   +G+    DHYA ++DLL R+G+F EA+D
Sbjct: 526 PDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKD 585

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +I  MP++P   +W +LL GCRIHGN+DL  +AAE LFE+ P++  TYV ++N+YA+
Sbjct: 586 MIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYAT 642



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 228/499 (45%), Gaps = 92/499 (18%)

Query: 30  SSLIQFCRQN-RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + L Q C  N  +    + VH+H+ +SGFKP  +I N L+D+Y K  ++  A  LFDE++
Sbjct: 18  AQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIR 77

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLY 146
           + D+ +  T+I+  +  G+   AR +F   P   RD   + AMI+GY   N    A++L+
Sbjct: 78  QPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELF 137

Query: 147 R-MMQNFENSVSNKFTLSSVLSAVSAI-----QCLRLGKEIHGYIMRTG----------- 189
           R +++N      + FT +SVL A++ I     QC    ++IH  ++++G           
Sbjct: 138 RDLLRN--GFRPDNFTFTSVLGALALIVEDEKQC----QQIHCAVVKSGSGFVTSVLNAL 191

Query: 190 -------------------------FDS----DEVVWSALSDMYGKCGSINEARQIFDKM 220
                                    FD     DE+ W+ +   Y + G ++ ARQ  D M
Sbjct: 192 LSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGM 251

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            ++ VV+W AMI  Y   G   E   +F ++   GI+ + FT+  VL+ACA+      GK
Sbjct: 252 TEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGK 311

Query: 281 QVHGYMTRIGYDP---YSFAA-SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           QVH Y+ R    P   +S +  +AL  +Y KCG V+ +++VFN MP  DLVSW ++++GY
Sbjct: 312 QVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGY 371

Query: 337 -------------------------------AQNGMPDKALEYFELLLKSGTQPDHIVFV 365
                                          AQNG  +++L+ F  +   G +P    F 
Sbjct: 372 VNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFA 431

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G + AC     +  G Q  H+   + G   +      ++ + A+ G    A  +   MP 
Sbjct: 432 GAIIACAWLAALMHGRQ-LHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY 490

Query: 426 KPDKFLWASLLGGCRIHGN 444
             D   W +++     HG+
Sbjct: 491 L-DSVSWNAMIAALGQHGH 508



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 172/338 (50%), Gaps = 7/338 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV----FISNCLLDMYAKCGNISDAQTLF 84
           Y+S++  C        GK+VH+++  +  +P +     ++N L  +Y KCG + +A+ +F
Sbjct: 294 YTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVF 353

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           ++M  +D+ S+N ++SG+   G +++A++ F+EMP+R+  +WT MISG  +     E+L 
Sbjct: 354 NQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLK 413

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L+  M++ E      +  +  + A + +  L  G+++H  ++R GFDS     +AL  MY
Sbjct: 414 LFNRMKS-EGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMY 472

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            KCG +  A  +F  M   D VSW AMI    Q G   +   LF  ++K  I P+  TF 
Sbjct: 473 AKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFL 532

Query: 265 GVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
            VL+ C+     E G +    M+ + G  P     + ++ +  + G    +K +   MP 
Sbjct: 533 TVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPV 592

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
            P    W +L+AG   +G  D  ++  E L +   Q D
Sbjct: 593 EPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHD 630



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 21/240 (8%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP------G 60
           N  R+ EA     ++   +   ++ +I    QN   EE  K+ + +KS GF+P      G
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 61  VFISNCLLD--MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
             I+   L   M+ +  +    +  FD      + + N +I+ + K G +E A  LF  M
Sbjct: 433 AIIACAWLAALMHGRQLHAQLVRLGFDS----SLSAGNALITMYAKCGVVEAAHCLFLTM 488

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P  D+ SW AMI+   ++    +AL+L+ +M   E+ + ++ T  +VLS  S      L 
Sbjct: 489 PYLDSVSWNAMIAALGQHGHGAQALELFELMLK-EDILPDRITFLTVLSTCSHAG---LV 544

Query: 179 KEIHGYIMRT----GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           +E H Y        G    E  ++ + D+  + G  +EA+ + + M V+     W A++ 
Sbjct: 545 EEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLA 604


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 263/450 (58%), Gaps = 12/450 (2%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           I  S+++ C Q      GK++H     +G    VF+ N L+ MY++CG++  A+ LFD+M
Sbjct: 111 IIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKM 170

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY- 146
            ERDV S++TMI  +           LF    QR   SWTAMI+GY+R N   E   L+ 
Sbjct: 171 SERDVVSWSTMIRAYI---------TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFV 221

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           RM++  EN   N  T+ S++ +   +  ++LGK +H YI+R GF     + +AL DMYGK
Sbjct: 222 RMIE--ENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGK 279

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG I  AR IFD M ++DV++WTAMI  Y Q    +  F LF ++  +G+RPN  T   +
Sbjct: 280 CGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSL 339

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+ CA + A ++GK  H Y+ + G +      +AL+ MY+KCG++  ++++F+     D+
Sbjct: 340 LSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDI 399

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            +W  ++AGY  +G  +KAL+ F  +   G +P+ I F+G L AC+HAGLV +G   F  
Sbjct: 400 CTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEK 459

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +    GL    +HY C+VDLL R+G   EA  +I  MP+ P+  +W ++L  C+IH N +
Sbjct: 460 MIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSN 519

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           + + AA  L  +EP+N    V M+NIYA+A
Sbjct: 520 MGELAARELLALEPQNCGYKVLMSNIYAAA 549



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 186/358 (51%), Gaps = 26/358 (7%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L+Q + L   +  R +F+    +S     + P  AL+ Y  M+  +  V + F + SVL 
Sbjct: 60  LDQTQQLHAHI-TRTHFNHAQQVSFSPFESHPRYALNTYTYMRKLDIEV-DSFIIPSVLK 117

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-- 225
           A S I   R+GKEIHG+ ++ G  SD  V +AL  MY +CGS+  AR +FDKM +RDV  
Sbjct: 118 ACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVS 177

Query: 226 --------------------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
                               VSWTAMI  Y +    EEG  LF  +I+  + PN  T   
Sbjct: 178 WSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLS 237

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           ++ +C    A +LGK++H Y+ R G+      A+ALV MY KCG + +++ +F+ M   D
Sbjct: 238 LIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKD 297

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +++WT++I+ YAQ    D A + F  +  +G +P+ +  V +L+ C   G +D G ++FH
Sbjct: 298 VMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFH 356

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +  +K G+         ++D+ A+ G    A+ + S+  +  D   W  ++ G  +HG
Sbjct: 357 AYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDICTWNVMMAGYGMHG 413



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 166/336 (49%), Gaps = 36/336 (10%)

Query: 4   ILCNQRRLKEAL--QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I CN     E L  +++ +   P+     SLI  C    A++ GK++H+++  +GF   +
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            ++  L+DMY KCG I  A+ +FD M+ +DV ++  MIS + +   ++ A  LF +M  R
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQM--R 325

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           DN          VR                      N+ T+ S+LS  +    L +GK  
Sbjct: 326 DN---------GVR---------------------PNELTMVSLLSLCAVNGALDMGKWF 355

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H YI + G + D ++ +AL DMY KCG I+ A+++F + +DRD+ +W  M+  Y   G  
Sbjct: 356 HAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYG 415

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASA 300
           E+   LF+E+   G++PN  TF G L+AC+       GK +   M    G  P       
Sbjct: 416 EKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGC 475

Query: 301 LVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           +V +  + G ++ + K+   MP  P++  W +++A 
Sbjct: 476 MVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAA 511


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 296/479 (61%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      ++ A+ +   I+HP    ++++I  C  +   +    +   +K SG +P +
Sbjct: 225 VDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNM 284

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F  +  L   A  G     + L   +       D+ +   ++  ++K   ++ AR  +D 
Sbjct: 285 FTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDS 344

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP++D  +W A+ISGY +    ++A+ L+  M + E+   N+ TLS+VL +V+++Q +++
Sbjct: 345 MPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFS-EDIDFNQTTLSTVLKSVASLQAIKV 403

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            K+IH   +++G  SD  V ++L D YGKC  I+EA +IF++    D+V++T+MI  Y Q
Sbjct: 404 CKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQ 463

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  EE   L+ ++  + I+P+ F  + +LNACA+ +A E GKQ+H +  + G+    FA
Sbjct: 464 YGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFA 523

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           +++LV+MY+KCG++E++ + F+ +P   +VSW+++I GYAQ+G   +AL  F  +L+ G 
Sbjct: 524 SNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGV 583

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI  V VL AC HAGLV++G QYF  ++   G+  T +HYAC++DLL RSG+ +EA 
Sbjct: 584 PPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAV 643

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++++ +P + D F+W +LLG  RIH N++L ++AA+ LF++EPE   T+V +ANIYASA
Sbjct: 644 ELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASA 702



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 206/394 (52%), Gaps = 38/394 (9%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG 106
           ++H+HL   GF     + N L+ +Y+KC     A+ L DE  E DV S+++++SG+ + G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
            +E+A  +F+EM                                       N+FT  SVL
Sbjct: 62  FVEEALLVFNEMC--------------------------------LLGVKCNEFTFPSVL 89

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
            A S  + L +G+++HG  + TGF+SD  V + L  MY KCG ++++R++F  +V+R+VV
Sbjct: 90  KACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVV 149

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SW A+   Y Q     E   LF E+++SGI PN F+ + +LNACA     +LG+++HG M
Sbjct: 150 SWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLM 209

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            ++G D   F+A+ALV MYSK G +E +  VF  +  PD+VSW ++IAG   +   D AL
Sbjct: 210 LKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLAL 269

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI--V 404
              + +  SGT+P+       L AC   G  + G Q   S+ +   +   +D +A +  V
Sbjct: 270 MLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK---MDAHSDLFAAVGLV 326

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           D+ ++     +A      MP K D   W +L+ G
Sbjct: 327 DMYSKCEMMDDARRAYDSMP-KKDIIAWNALISG 359



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 209/447 (46%), Gaps = 71/447 (15%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S+++ C   R L  G+KVH     +GF+   F++N L+ MYAKCG + D++ LF  + 
Sbjct: 85  FPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIV 144

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           ER+V S+N + S + +     +A  LF EM +          SG                
Sbjct: 145 ERNVVSWNALFSCYVQSELCGEAVGLFKEMVR----------SGI--------------- 179

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                  + N+F++S +L+A + +Q   LG++IHG +++ G D D+   +AL DMY K G
Sbjct: 180 -------MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAG 232

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I  A  +F  +   DVVSW A+I         +    L  E+  SG RPN FT +  L 
Sbjct: 233 EIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALK 292

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA    +ELG+Q+H  + ++      FAA  LV MYSKC  ++++++ ++ MP+ D+++
Sbjct: 293 ACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIA 352

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W +LI+GY+Q G    A+  F  +       +      VL +      + K  +  H+I 
Sbjct: 353 WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAI-KVCKQIHTIS 411

Query: 389 EKHGLTYTADHYAC--IVDLLARSGRFHEA---------EDVISKMPM------------ 425
            K G+   +D Y    ++D   +     EA         ED+++   M            
Sbjct: 412 IKSGI--YSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEE 469

Query: 426 -------------KPDKFLWASLLGGC 439
                        KPD F+ +SLL  C
Sbjct: 470 ALKLYLQMQDADIKPDPFICSSLLNAC 496



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 218/450 (48%), Gaps = 41/450 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    S ++  C   +  + G+K+H  +   G     F +N L+DMY+K G I  A  +
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F ++   DV S+N +I+G       + A  L DEM            SG     +P    
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKG----------SG----TRP---- 282

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         N FTLSS L A +A+    LG+++H  +++    SD      L DM
Sbjct: 283 --------------NMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDM 328

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +++AR+ +D M  +D+++W A+I  Y Q G   +  +LFS++    I  N  T 
Sbjct: 329 YSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTL 388

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + VL + A   A ++ KQ+H    + G     +  ++L+  Y KC +++ + K+F     
Sbjct: 389 STVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTW 448

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ- 382
            DLV++TS+I  Y+Q G  ++AL+ +  +  +  +PD  +   +L AC +    ++G Q 
Sbjct: 449 EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508

Query: 383 YFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           + H+IK      +  D +A   +V++ A+ G   +A+   S++P +     W++++GG  
Sbjct: 509 HVHAIK----FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRG-IVSWSAMIGGYA 563

Query: 441 IHGNLDLAKRA-AEALFEIEPENPATYVTM 469
            HG+   A R   + L +  P N  T V++
Sbjct: 564 QHGHGKEALRLFNQMLRDGVPPNHITLVSV 593



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 149/270 (55%), Gaps = 4/270 (1%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           E+H ++++ GF  D  + + L  +Y KC     AR++ D+  + DVVSW++++  Y Q G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
             EE   +F+E+   G++ N FTF  VL AC+      +G++VHG     G++   F A+
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            LV MY+KCG +++S+++F G+   ++VSW +L + Y Q+ +  +A+  F+ +++SG  P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 360 DHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           +      +L AC  AGL +  L +  H +  K GL         +VD+ +++G    A  
Sbjct: 182 NEFSISIILNAC--AGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           V   +   PD   W +++ GC +H   DLA
Sbjct: 240 VFQDIA-HPDVVSWNAIIAGCVLHDCNDLA 268


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 279/515 (54%), Gaps = 65/515 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALE-EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P    Y  ++Q C   R LE  GK++H H+   GF   V++ N L++MYA CGN+ DA+ 
Sbjct: 139 PDNYTYPLVVQACAV-RLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARK 197

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR--------------------- 121
           LFDE    D  S+N++++G+ K G +E+A+ +FD+MPQR                     
Sbjct: 198 LFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEA 257

Query: 122 ----------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
                     D  SW+A+ISGY +     EAL ++  M N      ++  + SVLSA + 
Sbjct: 258 WKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM-NANGMRLDEVVVVSVLSACAH 316

Query: 172 IQCLRLGKEIHGYIMRTGFDS-------------------------------DEVVWSAL 200
           +  ++ GK IHG ++R G +S                               D++ W+++
Sbjct: 317 LSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSM 376

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
                KCGS+ +AR +FD M ++D+VSW+A+I  Y Q     E  ALF E+    IRP+ 
Sbjct: 377 ISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDE 436

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
                V++AC   AA + GK VH Y+ + G        + L+ MY KCG VEN+ +VFNG
Sbjct: 437 TILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNG 496

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M    + SW +LI G A NG+ +++L+ F  +  +G  P+ I F+GVL AC H GLVD+G
Sbjct: 497 MEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEG 556

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
             +F S+ EKHG+     HY C+VDLL R+G  +EAE +I  MPM PD   W +LLG C+
Sbjct: 557 RCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACK 616

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            HG+ ++ +R    L E++P++   +V ++NI+AS
Sbjct: 617 KHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFAS 651



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/530 (25%), Positives = 234/530 (44%), Gaps = 112/530 (21%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL++  + N+     K   +H  +  FKP + +S  L      C N+     +  +M   
Sbjct: 11  SLMKLSKLNQLSSALKSTFNHKPT--FKPTITLS-ILETHLHNCHNLKQFNRILSQMILT 67

Query: 91  DVCSYNTMISGFTKGGS------LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
              S     S   K  +      L+ +  +FD +   + F W  M+  Y++ N   +AL 
Sbjct: 68  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 127

Query: 145 LYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRL-GKEIHGYIMRTGFDSDEVVWSALSD 202
           LY++M   +N+V  + +T   V+ A  A++ L   GKEIH ++++ GFDSD  V + L +
Sbjct: 128 LYKLM--VKNNVGPDNYTYPLVVQA-CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLIN 184

Query: 203 MYGKCGSINEARQ-------------------------------IFDKMVDRDVV----- 226
           MY  CG++ +AR+                               IFD+M  R++V     
Sbjct: 185 MYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSM 244

Query: 227 --------------------------SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
                                     SW+A+I  Y Q G  EE   +F E+  +G+R + 
Sbjct: 245 IVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDE 304

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS-------------- 306
                VL+ACA  +  + GK +HG + R+G + Y    +AL+HMYS              
Sbjct: 305 VVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNG 364

Query: 307 -----------------KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                            KCG+VE ++ +F+ MP  D+VSW+++I+GYAQ+    + L  F
Sbjct: 365 SHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALF 424

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +     +PD  + V V++ACTH   +D+G ++ H+   K+GL         ++D+  +
Sbjct: 425 HEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKNGLKVNVILGTTLLDMYMK 483

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
            G    A +V + M  K     W +L+ G  ++G   L +R+ +   E++
Sbjct: 484 CGCVENALEVFNGMEEKGVSS-WNALIIGLAVNG---LVERSLDMFSEMK 529


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 162/442 (36%), Positives = 267/442 (60%), Gaps = 3/442 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A  EG+++H H+   G+   +++   L+ MY + G + DA+ +
Sbjct: 86  PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV 145

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+   RDV SY  +I G+   G +E A+ LFDE+P +D  SW AMISGY       EAL
Sbjct: 146 FDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 205

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    N   ++ T+ +V+SA +    + LG+++H +I   GF S+  + +AL D+
Sbjct: 206 ELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 264

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  +F+ +  +DV+SW  +IG Y      +E   LF E+++SG  PN  T 
Sbjct: 265 YSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTM 324

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             +L ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E +K+VF+ M
Sbjct: 325 LSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM 384

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  + A + F  + K+G  PD I FVG+L+AC+H+G++D G 
Sbjct: 385 LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR 444

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+ + + +T   +HY C++DLL   G F EA+++I  MPM+PD  +W SLL  C++
Sbjct: 445 HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKM 504

Query: 442 HGNLDLAKRAAEALFEIEPENP 463
           H N++L +  A+ L +IEPE P
Sbjct: 505 HNNVELGESYAQNLIKIEPETP 526



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 152/329 (46%), Gaps = 43/329 (13%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSD---MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           + IH  +++TG  +     S L +   +      +  A  +F+ + + +++ W  M   +
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                      L+  +I  G+ PN +TF  +L +CA   A   G+Q+HG++ ++GYD   
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 296 FAASALVHMYSKCGN-------------------------------VENSKKVFNGMPRP 324
           +  ++L+ MY + G                                +EN++K+F+ +P  
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK 183

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+VSW ++I+GYA+ G   +ALE F+ ++K+  +PD    V V++AC  +G ++ G Q  
Sbjct: 184 DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ-V 242

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           H   + HG          ++DL ++ G    A  +   +  K D   W +L+GG   + +
Sbjct: 243 HLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYK-DVISWNTLIGG---YTH 298

Query: 445 LDLAKRA----AEALFEIEPENPATYVTM 469
           ++L K A     E L   E  N  T +++
Sbjct: 299 MNLYKEALLLFQEMLRSGESPNDVTMLSI 327



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 14/201 (6%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVH---MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           + +H  M + G    ++A S L+    +      +  +  VF  +  P+L+ W ++  G+
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTY 395
           A +  P  AL  +  ++  G  P+   F  +L +C  +    +G Q + H +K    L Y
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLK----LGY 119

Query: 396 TADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
             D Y    ++ +  ++GR  +A  V  +   + D   + +L+ G    G ++ A++  +
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTALIKGYASRGYIENAQKLFD 178

Query: 454 ALFEIEPENPATYVTMANIYA 474
              EI  ++  ++  M + YA
Sbjct: 179 ---EIPVKDVVSWNAMISGYA 196


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 175/453 (38%), Positives = 259/453 (57%), Gaps = 34/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL + CR +    EGK++H H    GF    +  N L++MY+ CG        
Sbjct: 86  PDRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCG-------- 134

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   L  AR +FD+M  +   SW  MI  + +++QP EA+
Sbjct: 135 -----------------------CLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAV 171

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M   EN   N+ TL +VL+A +  + L + K IH YI   GF    V+ + L D+
Sbjct: 172 RLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDV 231

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  AR +FDK  ++++ SW  MI  + ++   EE   LF E+   GI+ +  T 
Sbjct: 232 YCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTM 291

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A +L AC    A ELGK +H Y+ +   D      +ALV MY+KCG++E + +VF+ MP 
Sbjct: 292 ASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPE 351

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+++WT+LI G A  G  + AL+YF+ +   G +PD I FVGVL AC+HAG VD+G+ +
Sbjct: 352 KDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISH 411

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+S+ + +G+  T +HY  +VD+L R+GR  EAE++I  MPM PD+F+   LLG CRIHG
Sbjct: 412 FNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHG 471

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           NL+ A+RAA+ L EI+P +  TYV ++NIY S+
Sbjct: 472 NLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSS 504



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 176/348 (50%), Gaps = 7/348 (2%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
             + GSL+ AR +F ++P   +++  ++I G    N   EAL  Y+ M   +  + +++T
Sbjct: 32  LQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMM-VQGLIPDRYT 90

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
             S+  +         GK+IH +  + GF SD    + L +MY  CG +  AR++FDKM 
Sbjct: 91  FPSLFKSCRNSS---EGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKME 147

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGK 280
           D+ VVSW  MIG + Q  +  E   LF  ++KS  ++PN  T   VL ACA      + K
Sbjct: 148 DKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVK 207

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           ++H Y+   G+  +    + L+ +Y KCG V+ ++ +F+     +L SW  +I G+ ++ 
Sbjct: 208 RIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDS 267

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             ++AL  F  +   G + D +    +L ACTH G ++ G ++ H+  +K  +       
Sbjct: 268 NYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVALG 326

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             +VD+ A+ G    A  V  +MP K D   W +L+ G  + G  + A
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEK-DVMTWTALILGLAMCGQAENA 373



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 24/206 (11%)

Query: 280 KQVHGYMTRIG--YDPYSFAASALVHMYS--KCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
           KQ+H  M R G  +DP  F AS +V   S  + G+++ ++ VF+ +P P   +  S+I G
Sbjct: 5   KQIHAQMLRTGLFFDP--FTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLT 394
                +  +AL +++ ++  G  PD   F  +  +C ++    +G Q + HS K    L 
Sbjct: 63  CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTK----LG 115

Query: 395 YTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           + +D YA   ++++ +  G    A  V  KM  K     WA+++G   +H   D    A 
Sbjct: 116 FASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT-VVSWATMIG---VHAQWDQPNEAV 171

Query: 453 EALFE--IEPEN-PATYVTMANIYAS 475
             LF+  ++ EN     VT+ N+  +
Sbjct: 172 R-LFDRMMKSENVKPNEVTLVNVLTA 196


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 176/469 (37%), Positives = 281/469 (59%), Gaps = 17/469 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P      +++  C    AL+ GK+VH     +G    VF+ N L+ MYAKC  +++A  +
Sbjct: 232 PDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKV 291

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD----NFSWTAMISGYVRYNQP 139
           F+ ++++DV S+N M++G+++ GS + A +LF  M + D      +W+A+I+GY +    
Sbjct: 292 FEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHG 351

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF-------DS 192
            EALD++R MQ +     N  TL+S+LS  +++  L  GK+ H Y+++          + 
Sbjct: 352 FEALDVFRQMQLYGLE-PNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKED 410

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKM--VDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
           D +V + L DMY KC S   AR IFD +   D++VV+WT MIG Y Q G   +   LF++
Sbjct: 411 DLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQ 470

Query: 251 LIK--SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSK 307
           + K  + ++PNAFT +  L ACA      LG+Q+H Y  R   +    +  + L+ MYSK
Sbjct: 471 IFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSK 530

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G+++ ++ VF+ M   ++VSWTSL+ GY  +G  ++AL  F+ + K G   D I F+ V
Sbjct: 531 SGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVV 590

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L AC+H+G+VD+G+ YFH + +  G+T  A+HYAC+VDLL R+GR +EA ++I  M M+P
Sbjct: 591 LYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEP 650

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              +W +LL   RIH N++L + AA  L E+  EN  +Y  ++N+YA+A
Sbjct: 651 TAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANA 699



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 219/486 (45%), Gaps = 95/486 (19%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +++ C +  +L  G  VH+ + ++G    VFI N ++ MY +CG        
Sbjct: 125 PDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCG-------- 176

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPI 140
                                  +L+ A  +FDE+ +R   D  SW ++++ YV+  Q  
Sbjct: 177 -----------------------ALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSR 213

Query: 141 EALDL-YRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
            AL + +RM  ++   +  +  TL ++L A +++  L+ GK++HG+ +R G   D  V +
Sbjct: 214 TALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGN 273

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM--------------------------- 231
           AL  MY KC  +NEA ++F+ +  +DVVSW AM                           
Sbjct: 274 ALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKL 333

Query: 232 --------IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
                   I  Y Q+G   E   +F ++   G+ PN  T A +L+ CA   A   GKQ H
Sbjct: 334 DVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 393

Query: 284 GYMTR----IGYDPYS---FAASALVHMYSKCGNVENSKKVFNGMPRPD--LVSWTSLIA 334
            Y+ +    + ++         + L+ MY+KC +   ++ +F+ +   D  +V+WT +I 
Sbjct: 394 AYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIG 453

Query: 335 GYAQNGMPDKALEYFELLLKSGT--QPDHIVFVGVLTACTHAGLVDKGLQ---YFHSIKE 389
           GYAQ+G  + AL+ F  + K  T  +P+       L AC   G +  G Q   Y    + 
Sbjct: 454 GYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNEN 513

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +  + Y  +   C++D+ ++SG    A  V   M ++ +   W SL+ G  +HG      
Sbjct: 514 ESEVLYVGN---CLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHG------ 563

Query: 450 RAAEAL 455
           R  EAL
Sbjct: 564 RGEEAL 569



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 199/451 (44%), Gaps = 80/451 (17%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R L  ++      +   P+I   LI   RQ + L   K  H  +   GF     + +  +
Sbjct: 12  RILITSVHFYSTFTTSPPTI--PLISLLRQCKTLINAKLAHQQIFVHGFTE---MFSYAV 66

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
             Y +CG  ++A +L     +R + S++T+                         F W A
Sbjct: 67  GAYIECGASAEAVSLL----QRLIPSHSTV-------------------------FWWNA 97

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I   V+     + L  Y  MQ     + + +T   VL A   I  LR G  +H  +   
Sbjct: 98  LIRRSVKLGLLDDTLGFYCQMQRL-GWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCAN 156

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGF 245
           G  S+  + +++  MYG+CG++++A Q+FD++++R   D+VSW +++  Y Q G+     
Sbjct: 157 GLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTAL 216

Query: 246 ALFSEL---IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
            +   +       +RP+A T   +L ACA   A + GKQVHG+  R G     F  +ALV
Sbjct: 217 RIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALV 276

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY+KC  +  + KVF G+ + D+VSW +++ GY+Q G  D AL  F+++ +   + D I
Sbjct: 277 SMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVI 336

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            +  V+     AG   KG          HG                      EA DV  +
Sbjct: 337 TWSAVI-----AGYAQKG----------HGF---------------------EALDVFRQ 360

Query: 423 MP---MKPDKFLWASLLGGCRIHGNLDLAKR 450
           M    ++P+    ASLL GC   G L   K+
Sbjct: 361 MQLYGLEPNVVTLASLLSGCASVGALLYGKQ 391


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 167/445 (37%), Positives = 273/445 (61%), Gaps = 2/445 (0%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           ++++    N  +  GK++H  +   GF+  + + + LLDMY+K G ISDA+ +F  + +R
Sbjct: 141 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDR 200

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +   YNT++ G    G +E A  LF  M ++D+ SW+AMI G  +     EA++ +R M+
Sbjct: 201 NTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMK 259

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    +++   SVL A   +  +  G++IH  I+RT       V SAL DMY KC  +
Sbjct: 260 -IEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCL 318

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + A+ +FD+M  ++VVSWTAM+  Y Q GR  E   +F ++ +SGI P+ +T    ++AC
Sbjct: 319 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISAC 378

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A+ ++ E G Q HG     G   Y   +++LV +Y KCG++++S ++FN M   D VSWT
Sbjct: 379 ANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWT 438

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++++ YAQ G   +A++ F+ +++ G +PD +   GV++AC+ AGLV+KG +YF  +  +
Sbjct: 439 AMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINE 498

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +G+  +  HY+C++DL +RSGR  EA   I+ MP +PD   W +LL  CR  GNL++ K 
Sbjct: 499 YGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKW 558

Query: 451 AAEALFEIEPENPATYVTMANIYAS 475
           AAE+L E++P +PA Y  +++IYAS
Sbjct: 559 AAESLIELDPHHPAGYTLLSSIYAS 583



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 220/439 (50%), Gaps = 34/439 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           YS+ I+ C    A    K +H ++  +   P  F+ N ++  YA   +   A+ +FD + 
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR- 147
           + ++ S+N ++  ++K G L +    F+++P RD  +W  +I GY        A+  Y  
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           MM++F ++++ + TL ++L   S+   + LGK+IHG +++ GF+S  +V S L DMY K 
Sbjct: 126 MMKDFSSNLT-RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKV 184

Query: 208 GSINEARQIFDKMVDR------------------------------DVVSWTAMIGRYFQ 237
           G I++A+++F  + DR                              D VSW+AMI    Q
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQ 244

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  +E    F E+   G++ + + F  VL AC    A   G+Q+H  + R     + + 
Sbjct: 245 NGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYV 304

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            SAL+ MY KC  +  +K VF+ M + ++VSWT+++ GY Q G   +A++ F  + +SG 
Sbjct: 305 GSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI 364

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PDH      ++AC +   +++G Q FH      GL +       +V L  + G   ++ 
Sbjct: 365 DPDHYTLGQAISACANISSLEEGSQ-FHGKAITAGLIHYITVSNSLVTLYGKCGDIDDST 423

Query: 418 DVISKMPMKPDKFLWASLL 436
            + ++M ++ D+  W +++
Sbjct: 424 RLFNEMNVR-DEVSWTAMV 441


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 287/489 (58%), Gaps = 36/489 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    + L   C Q++ L  G  +HSHL  +     +F++N L+DMY+KC ++ +AQ  
Sbjct: 9   PSFDHCARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKA 68

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD++  R++ S+NT+++ +++ G   QAR +FDEMP  +  S+  +IS +  +   +E++
Sbjct: 69  FDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESM 128

Query: 144 DLYRMMQ-NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +++R MQ +F+    ++ TL S+    + +  L   +++HG  +  G + + +V +A+ D
Sbjct: 129 NIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVD 188

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS------------- 249
            YGKCG  + +  IF +M +RDVV+WT+M+  Y Q  R ++ F +FS             
Sbjct: 189 AYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTAL 248

Query: 250 ------------------ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
                             ++++    PNAFTF GVL+ACAD A    GK++HG + R   
Sbjct: 249 INALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSS 308

Query: 292 D---PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
           +   P  +  +AL+ +YSK G+V++++ +FN +   D+VSW SLI G+AQNG+  +AL  
Sbjct: 309 ELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLA 368

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  + + G +P+ + F+ VL+AC+H GL  +GL     +++ + +  + +HYA ++D+  
Sbjct: 369 FRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFG 428

Query: 409 RSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467
           R  R  EA D+IS+ P       +W ++LG CRIH NLDLA RAAE LFE+EP+N   YV
Sbjct: 429 RENRLAEALDLISRAPNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYV 488

Query: 468 TMANIYASA 476
            ++N++A+A
Sbjct: 489 MLSNVFAAA 497



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 2   IDILCNQRRLKEAL----QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL--KSS 55
           I+ L   +   EAL    Q+L + + P+   +  ++  C     + +GK++H  +  +SS
Sbjct: 249 INALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSS 308

Query: 56  GFK-PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
               P V++ N L+D+Y+K G++  A+ LF+ + E+DV S+N++I+GF + G   +A   
Sbjct: 309 ELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLA 368

Query: 115 FDEMPQ---RDN-FSWTAMISGYVRYNQPIEALDLYRMMQNF 152
           F +M +   R N  ++ A++S         E L +  +M+ F
Sbjct: 369 FRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELMEKF 410


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 187/524 (35%), Positives = 299/524 (57%), Gaps = 76/524 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL--------------- 68
           P    YS ++Q C    ++E G  VH+ +   GF    F+S  LL               
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228

Query: 69  ----------------------DMYAKC----------GNISDAQT----------LFDE 86
                                 D+Y             G   DAQT          L D 
Sbjct: 229 FNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDV 288

Query: 87  MQERDVCSY--------NTMISGF-----TKGGSLEQARNLFDE--MPQRDNFSWTAMIS 131
            + ++V  Y        NT++        +K GSL++AR++F+   +  R N  W AMIS
Sbjct: 289 NKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMIS 348

Query: 132 GYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           GY+R     +AL+L+ +M QN  +   + +T  SV +A++A++CL LGK++H   +++G 
Sbjct: 349 GYLRSGFNEKALELFAKMCQN--DIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL 406

Query: 191 DSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           + + V + +A+++ Y KCGS+ + R++F++M DRD++SWT+++  Y Q    ++   +FS
Sbjct: 407 EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS 466

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            +   GI PN FTF+ VL +CA+    E G+QVHG + ++G D      SALV MY+KCG
Sbjct: 467 NMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCG 526

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            + ++KKVFN +   D VSWT++IAG+AQ+G+ D AL+ F  +++ G +P+ + F+ VL 
Sbjct: 527 CLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLF 586

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H GLV++GLQYF  +K+ +GL    +HYACIVDLL+R G  ++A + IS+MP++P++
Sbjct: 587 ACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNE 646

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            +W +LLG CR+HGN++L + AA+ +   + EN ATYV ++N Y
Sbjct: 647 MVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTY 690



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 209/440 (47%), Gaps = 30/440 (6%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALE-----EGKKVHSHLKSSGFKPGVFISNCLL 68
            LQI+ QI + + +I  S IQ       ++     +  K  SHL+    +P       L+
Sbjct: 23  VLQIIRQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQ---IQP-------LV 72

Query: 69  DMYAKCGN---ISDAQTLFDEMQERDVCSYNTMI------SGFTKGGSLEQARNLFDEMP 119
           D+   C +   +  A+T+   + +    ++++++        ++K   ++ A  LFD+M 
Sbjct: 73  DLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMS 132

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           QR+ FSWT +I+G       ++  + +  MQ+ +    ++F  S +L     +  + LG 
Sbjct: 133 QRNTFSWTVLIAGLAENGLFLDGFEFFCEMQS-QGIFPDQFAYSGILQICIGLDSIELGN 191

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
            +H  I+  GF S   V +AL +MY K   I ++ ++F+ M + +VVSW AMI  +    
Sbjct: 192 MVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSND 251

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              + F LF  ++  G+ P+A TF GV  A          K+V GY   +G D  +   +
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311

Query: 300 ALVHMYSKCGNVENSKKVFNG--MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           AL+ M SKCG+++ ++ +FN   +       W ++I+GY ++G  +KALE F  + ++  
Sbjct: 312 ALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
             DH  +  V  A      +  G + +  +IK    + Y +   A + +  A+ G   + 
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNA-VANAYAKCGSLEDV 430

Query: 417 EDVISKMPMKPDKFLWASLL 436
             V ++M  + D   W SL+
Sbjct: 431 RKVFNRMEDR-DLISWTSLV 449



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 16/244 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +SS++  C     LE G++VH  +   G      I + L+DMYAKCG + DA+ +
Sbjct: 475 PNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKV 534

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQP 139
           F+ +   D  S+  +I+G  + G ++ A  LF  M Q     +  ++  ++         
Sbjct: 535 FNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLV 594

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            E L  +++M+     V      + ++  +S +  L    E   +I R   + +E+VW  
Sbjct: 595 EEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAME---FISRMPVEPNEMVWQT 651

Query: 200 LSDMYGKC---GSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
           L    G C   G++        K++     +  ++  +   Y + G  ++G +L   + +
Sbjct: 652 L---LGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKE 708

Query: 254 SGIR 257
            G++
Sbjct: 709 QGVK 712


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 187/524 (35%), Positives = 299/524 (57%), Gaps = 76/524 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL--------------- 68
           P    YS ++Q C    ++E G  VH+ +   GF    F+S  LL               
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228

Query: 69  ----------------------DMYAKC----------GNISDAQT----------LFDE 86
                                 D+Y             G   DAQT          L D 
Sbjct: 229 FNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDV 288

Query: 87  MQERDVCSY--------NTMISGF-----TKGGSLEQARNLFDE--MPQRDNFSWTAMIS 131
            + ++V  Y        NT++        +K GSL++AR++F+   +  R N  W AMIS
Sbjct: 289 NKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMIS 348

Query: 132 GYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           GY+R     +AL+L+ +M QN  +   + +T  SV +A++A++CL LGK++H   +++G 
Sbjct: 349 GYLRSGFNEKALELFAKMCQN--DIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL 406

Query: 191 DSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           + + V + +A+++ Y KCGS+ + R++F++M DRD++SWT+++  Y Q    ++   +FS
Sbjct: 407 EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS 466

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            +   GI PN FTF+ VL +CA+    E G+QVHG + ++G D      SALV MY+KCG
Sbjct: 467 NMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCG 526

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            + ++KKVFN +   D VSWT++IAG+AQ+G+ D AL+ F  +++ G +P+ + F+ VL 
Sbjct: 527 CLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLF 586

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H GLV++GLQYF  +K+ +GL    +HYACIVDLL+R G  ++A + IS+MP++P++
Sbjct: 587 ACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNE 646

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            +W +LLG CR+HGN++L + AA+ +   + EN ATYV ++N Y
Sbjct: 647 MVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTY 690



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 209/440 (47%), Gaps = 30/440 (6%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALE-----EGKKVHSHLKSSGFKPGVFISNCLL 68
            LQI+ QI + + +I  S IQ       ++     +  K  SHL+    +P       L+
Sbjct: 23  VLQIIRQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQ---IQP-------LV 72

Query: 69  DMYAKCGN---ISDAQTLFDEMQERDVCSYNTMI------SGFTKGGSLEQARNLFDEMP 119
           D+   C +   +  A+T+   + +    ++++++        ++K   ++ A  LFD+M 
Sbjct: 73  DLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMS 132

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           QR+ FSWT +I+G       ++  + +  MQ+ +    ++F  S +L     +  + LG 
Sbjct: 133 QRNTFSWTVLIAGLAENGLFLDGFEFFCEMQS-QGIFPDQFAYSGILQICIGLDSIELGN 191

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
            +H  I+  GF S   V +AL +MY K   I ++ ++F+ M + +VVSW AMI  +    
Sbjct: 192 MVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSND 251

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              + F LF  ++  G+ P+A TF GV  A          K+V GY   +G D  +   +
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311

Query: 300 ALVHMYSKCGNVENSKKVFNG--MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           AL+ M SKCG+++ ++ +FN   +       W ++I+GY ++G  +KALE F  + ++  
Sbjct: 312 ALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
             DH  +  V  A      +  G + +  +IK    + Y +   A + +  A+ G   + 
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNA-VANAYAKCGSLEDV 430

Query: 417 EDVISKMPMKPDKFLWASLL 436
             V ++M  + D   W SL+
Sbjct: 431 RKVFNRMEDR-DLISWTSLV 449



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 16/244 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +SS++  C     LE G++VH  +   G      I + L+DMYAKCG + DA+ +
Sbjct: 475 PNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKV 534

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQP 139
           F+ +   D  S+  +I+G  + G ++ A  LF  M Q     +  ++  ++         
Sbjct: 535 FNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLV 594

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            E L  +++M+     V      + ++  +S +  L    E   +I R   + +E+VW  
Sbjct: 595 EEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAME---FISRMPVEPNEMVWQT 651

Query: 200 LSDMYGKC---GSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
           L    G C   G++        K++     +  ++  +   Y + G  ++G +L   + +
Sbjct: 652 L---LGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKE 708

Query: 254 SGIR 257
            G++
Sbjct: 709 QGVK 712


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  340 bits (873), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 174/457 (38%), Positives = 272/457 (59%), Gaps = 6/457 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC---GNISDA 80
           P  +++ S+++ C     L  G+ VH  +   G    ++  N L++MYAK    G+    
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISV 162

Query: 81  QTLFDEMQERDVCSYNTMISGFT--KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
             +FDEM +R   S +  +   T      ++  R +F+ MP++D  S+  +I+GY +   
Sbjct: 163 GNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGM 222

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             +AL + R M   +    + FTLSSVL   S    +  GKEIHGY++R G DSD  + S
Sbjct: 223 YEDALRMVREMGTTDLK-PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGS 281

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           +L DMY K   I ++ ++F ++  RD +SW +++  Y Q GR  E   LF +++ + ++P
Sbjct: 282 SLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKP 341

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
            A  F+ V+ ACA  A   LGKQ+HGY+ R G+    F ASALV MYSKCGN++ ++K+F
Sbjct: 342 GAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIF 401

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + M   D VSWT++I G+A +G   +A+  FE + + G +P+ + FV VLTAC+H GLVD
Sbjct: 402 DRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD 461

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +   YF+S+ + +GL    +HYA + DLL R+G+  EA + ISKM ++P   +W++LL  
Sbjct: 462 EAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSS 521

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           C +H NL+LA++ AE +F ++ EN   YV M N+YAS
Sbjct: 522 CSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYAS 558



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 39/330 (11%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           S+K  + +++   + I+     K++H   +RT   S     S +  +Y     ++EA  +
Sbjct: 3   SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLL 61

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F  +    V++W ++I  +  +    +  A F E+  SG  P+   F  VL +C      
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSK---------CGNV---------------- 311
             G+ VHG++ R+G D   +  +AL++MY+K          GNV                
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 312 -----------ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
                      ++ ++VF  MPR D+VS+ ++IAGYAQ+GM + AL     +  +  +PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
                 VL   +    V KG +  H    + G+       + +VD+ A+S R  ++E V 
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKE-IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           S++  + D   W SL+ G   +G  + A R
Sbjct: 301 SRLYCR-DGISWNSLVAGYVQNGRYNEALR 329



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 139/332 (41%), Gaps = 64/332 (19%)

Query: 2   IDILCNQRRLK-------------------------------EALQILHQI----SHPSP 26
           +D+     R++                               EAL++  Q+      P  
Sbjct: 284 VDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGA 343

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
             +SS+I  C     L  GK++H ++   GF   +FI++ L+DMY+KCGNI  A+ +FD 
Sbjct: 344 VAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDR 403

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEA 142
           M   D  S+  +I G    G   +A +LF+EM ++    +  ++ A+++         EA
Sbjct: 404 MNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLGK--EIHGYIMRTGFDSDEVVWS 198
              +       NS++  + L+  L   +A+  L  R GK  E + +I +   +    VWS
Sbjct: 464 WGYF-------NSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWS 516

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRD---VVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
            L        ++  A ++ +K+   D   + ++  M   Y   GR +E   L   + K G
Sbjct: 517 TLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKG 576

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           +R           AC   +  E+  + HG+++
Sbjct: 577 LRKKP--------AC---SWIEMKNKTHGFVS 597


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 269/451 (59%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y S+++ C    AL+ G+++H+ +  SGF+  V++ + L+DMYAK          
Sbjct: 413 PNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAK---------- 462

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                 G L+ AR +   + + D  SWTAMI+GY +++   EAL
Sbjct: 463 ---------------------HGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEAL 501

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L++ M+N +   S+    SS +SA + IQ L  G++IH     +G+  D  + +AL  +
Sbjct: 502 KLFQEMEN-QGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSL 560

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG   +A   F+K+  +D +SW A+I  + Q G  EE   +FS++ ++G+  N FTF
Sbjct: 561 YARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTF 620

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              ++A A+ A  + GKQ+H  M + GYD  + A++ L+ +YSKCG++E++K+ F  MP 
Sbjct: 621 GSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE 680

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++VSW ++I GY+Q+G   +A+  FE + + G  P+H+ FVGVL+AC+H GLV++GL Y
Sbjct: 681 KNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSY 740

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+ ++HGL    +HY C+VDLL R+     A + I +MP++PD  +W +LL  C +H 
Sbjct: 741 FRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHK 800

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           N+++ + AA  L E+EPE+ ATYV ++N+YA
Sbjct: 801 NIEIGEFAARHLLELEPEDSATYVLLSNMYA 831



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 208/415 (50%), Gaps = 34/415 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P ++SS++  C +    + G+++H  +   G     F+ N L+ +Y++ GN+  A+ +
Sbjct: 211 PTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQI 270

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +M  RD  SYN++ISG  + G  ++A  LF++M                        L
Sbjct: 271 FSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQ-----------------------L 307

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           D  +          +  T++S+LSA +++     GK++H Y+++ G  SD ++  +L D+
Sbjct: 308 DCMK---------PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  I  A + F      +VV W  M+  Y Q G   E + +F ++   G+ PN +T+
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C    A +LG+Q+H  + + G+    +  S L+ MY+K G ++ ++ +   +  
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLRE 478

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWT++IAGY Q+ +  +AL+ F+ +   G + D+I F   ++AC     +++G Q 
Sbjct: 479 EDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQG-QQ 537

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            H+     G +        +V L AR GR  +A     K+  K D   W +L+ G
Sbjct: 538 IHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK-DNISWNALISG 591



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 208/434 (47%), Gaps = 38/434 (8%)

Query: 14  ALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ALQ+  ++      P     +SL+  C    A  +GK++HS++   G    + I   LLD
Sbjct: 298 ALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLD 357

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           +Y KC +I  A   F   +  +V  +N M+  + + G+L ++  +F +M           
Sbjct: 358 LYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQM----------- 406

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
                                  E  + N++T  S+L   +++  L LG++IH  ++++G
Sbjct: 407 ---------------------QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG 445

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F  +  V S L DMY K G ++ AR I  ++ + DVVSWTAMI  Y Q     E   LF 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           E+   GIR +   F+  ++ACA   A   G+Q+H      GY       +ALV +Y++CG
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCG 565

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
             +++   F  +   D +SW +LI+G+AQ+G  ++AL+ F  + ++G + +   F   ++
Sbjct: 566 RAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVS 625

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           A  +   + +G Q  H++  K G     +    ++ L ++ G   +A+    +MP K + 
Sbjct: 626 ATANTANIKQGKQ-IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEK-NV 683

Query: 430 FLWASLLGGCRIHG 443
             W +++ G   HG
Sbjct: 684 VSWNAMITGYSQHG 697



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 206/418 (49%), Gaps = 35/418 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L + C  + +L + KK+H+ +  SGF     + + L+D+Y   G + +A  LFD++ 
Sbjct: 13  YLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIP 72

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
             +V  +N +ISG        Q   LF           + MI+                 
Sbjct: 73  SSNVSFWNKVISGLLAKKLASQVLGLF-----------SLMIT----------------- 104

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQC-LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
               EN   ++ T +SVL A S  +   ++ ++IH  I+  GF S  +V + L D+Y K 
Sbjct: 105 ----ENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKN 160

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G ++ A+ +F+++  +D VSW AMI    Q GR +E   LF ++ KS + P  + F+ VL
Sbjct: 161 GHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVL 220

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +AC      +LG+Q+HG++ + G    +F  +ALV +YS+ GN+  ++++F+ M R D +
Sbjct: 221 SACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI 280

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           S+ SLI+G AQ G  D+AL+ FE +     +PD +    +L+AC   G   KG Q  HS 
Sbjct: 281 SYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ-LHSY 339

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
             K G++        ++DL  +      A +       + +  LW  +L      GNL
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETE-NVVLWNVMLVAYGQLGNL 396



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 210/439 (47%), Gaps = 38/439 (8%)

Query: 24  PSPSIYSSLIQFCRQNRA-LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P  S ++S+++ C   +A  +  +++H+ +   GF     + N L+D+Y+K G++     
Sbjct: 109 PDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHV----- 163

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                     + A+ +F+ +  +D+ SW AMISG  +  +  EA
Sbjct: 164 --------------------------DLAKLVFERLFLKDSVSWVAMISGLSQNGREDEA 197

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + L+  M      +   +  SSVLSA + I+  +LG+++HG+I++ G  S+  V +AL  
Sbjct: 198 ILLFCQMHK-SAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVT 256

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y + G++  A QIF KM  RD +S+ ++I    Q G  +    LF ++    ++P+  T
Sbjct: 257 LYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVT 316

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            A +L+ACA   A   GKQ+H Y+ ++G         +L+ +Y KC ++E + + F    
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTE 376

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             ++V W  ++  Y Q G   ++   F  +   G  P+   +  +L  CT  G +D G Q
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H+   K G  +     + ++D+ A+ G    A  ++ ++  + D   W +++ G   H
Sbjct: 437 -IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQH 494

Query: 443 GNLDLAKRAAEALFEIEPE 461
              DL   A +   E+E +
Sbjct: 495 ---DLFAEALKLFQEMENQ 510



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 7/281 (2%)

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            K++H  I ++GFD ++V+ S L D+Y   G ++ A ++FD +   +V  W  +I     
Sbjct: 29  AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLA 88

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE-ELGKQVHGYMTRIGYDPYSF 296
           +    +   LFS +I   + P+  TFA VL AC+   A  ++ +Q+H  +   G+     
Sbjct: 89  KKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL 148

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             + L+ +YSK G+V+ +K VF  +   D VSW ++I+G +QNG  D+A+  F  + KS 
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSA 208

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFH 414
             P   VF  VL+ACT   L   G Q  H    K GL  +++ + C  +V L +R G   
Sbjct: 209 VIPTPYVFSSVLSACTKIELFKLGEQ-LHGFIVKWGL--SSETFVCNALVTLYSRWGNLI 265

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
            AE + SKM  + D+  + SL+ G    G  D A +  E +
Sbjct: 266 AAEQIFSKMH-RRDRISYNSLISGLAQRGFSDRALQLFEKM 305



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 1/194 (0%)

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GIR N  T+  +   C +  +    K++H  + + G+D      S L+ +Y   G V+N+
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            K+F+ +P  ++  W  +I+G     +  + L  F L++     PD   F  VL AC+  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
               +  +  H+    HG   +      ++DL +++G    A+ V  ++ +K D   W +
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK-DSVSWVA 183

Query: 435 LLGGCRIHGNLDLA 448
           ++ G   +G  D A
Sbjct: 184 MISGLSQNGREDEA 197



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 11/197 (5%)

Query: 12  KEALQILHQISHPSPS----IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EALQ+  Q++          + S +        +++GK++H+ +  +G+      SN L
Sbjct: 599 EEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVL 658

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DN 123
           + +Y+KCG+I DA+  F EM E++V S+N MI+G+++ G   +A +LF+EM Q     ++
Sbjct: 659 ITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNH 718

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            ++  ++S         E L  +R M      V        V+  +     L   +E   
Sbjct: 719 VTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCARE--- 775

Query: 184 YIMRTGFDSDEVVWSAL 200
           +I     + D ++W  L
Sbjct: 776 FIEEMPIEPDAMIWRTL 792


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/446 (37%), Positives = 267/446 (59%), Gaps = 33/446 (7%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V     ++  YA+ G I  A+ +FDE+   +V ++N +I+G+T+ G L++A++LF +MP 
Sbjct: 458 VATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV 517

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +++ SW AMI+G+V+  +  EAL+L   +     SV +  + +S LSA + I  + +G+ 
Sbjct: 518 KNSASWAAMIAGFVQNEESREALELLIELHR-SGSVPSDSSFTSALSACANIGDVEIGRV 576

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSI------------------------------ 210
           IH   ++TG   +  V + L  MY KCG++                              
Sbjct: 577 IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYM 636

Query: 211 -NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
            ++AR +F+KM  RDVVSWTA+I  Y Q G  E    LF +++  GI+PN  T   +L+A
Sbjct: 637 LDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSA 696

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C +  A +LG+Q H  + ++G+D + F  ++L+ MY KCG  E+   VF  MP  DL++W
Sbjct: 697 CGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITW 755

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            +++ G AQNG+  +A++ FE +   G  PD + F+GVL AC+HAGLVD+G  +F+S+ +
Sbjct: 756 NAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQ 815

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           K+G+     HY C+VDLL R+G   EAE +I  MP+KPD  +W +LLG CRIH N++L +
Sbjct: 816 KYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQ 875

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
           R AE LF++     ATYV ++N++AS
Sbjct: 876 RVAERLFQMTKPKSATYVLLSNLFAS 901



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 206/389 (52%), Gaps = 10/389 (2%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL++L ++    S PS S ++S +  C     +E G+ +HS    +G +   ++ N L
Sbjct: 537 REALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGL 596

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYAKCGN+ D   +F  ++ +D  S+N++ISG ++   L+ AR +F++MP+RD  SWT
Sbjct: 597 ISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWT 656

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           A+IS YV+      ALDL+  M        N+ T++S+LSA   +  ++LG++ H  I +
Sbjct: 657 AIISAYVQAGHGEVALDLFLDMLA-RGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFK 715

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GFD+   V ++L  MY KCG   +   +F++M + D+++W A++    Q G  +E   +
Sbjct: 716 LGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKI 774

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYS 306
           F ++   GI P+  +F GVL AC+     + G      MT + G  P  +  + +V +  
Sbjct: 775 FEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLG 834

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           + G +  ++ +   MP +PD V W +L+     +   +      E L +  T+P    +V
Sbjct: 835 RAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQM-TKPKSATYV 893

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            +       G+ DK  +    +K++ GLT
Sbjct: 894 LLSNLFASQGMWDKVAEIRKLMKDQ-GLT 921



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 191/380 (50%), Gaps = 23/380 (6%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F  N  +    + G + +A+ +F+EM +RDV S+N+MI+G+++ G +++AR LFD    
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           ++  +WT +++GY +  +  EA +++  M    N VS    +S  +         +L  E
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTE-RNVVSWNAMISGYVQNGDLKNARKLFDE 289

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +         + +   W+++   Y  C  ++EAR++FD+M +R+ VSW  MI  Y     
Sbjct: 290 MP--------EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISD 341

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E + +F ++ ++  RP+   F  VL+A       EL   +     + GY+      SA
Sbjct: 342 YWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSA 401

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           +++ Y++ G+++ +   F  MP  +  SWT++IA +AQ G  D A++ +E +      P+
Sbjct: 402 ILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERV------PE 455

Query: 361 HIVF--VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
             V     ++TA    G + K    F  I   + + + A     I+    ++G   EA+D
Sbjct: 456 QTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNA-----IIAGYTQNGMLKEAKD 510

Query: 419 VISKMPMKPDKFLWASLLGG 438
           +  KMP+K +   WA+++ G
Sbjct: 511 LFQKMPVK-NSASWAAMIAG 529


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 281/472 (59%), Gaps = 1/472 (0%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LCN  R+K+A           PS++S L+Q C +  +L  GK+VHS + +SG     FIS
Sbjct: 41  LCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFIS 100

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL+ Y+K G    +  LF  M  R+V S+N +I+G+ + G LE A+ LFDEM +R+  
Sbjct: 101 NHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIA 160

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +W AMI+G  ++    +AL L++ M      + ++FTL SVL   + ++ L  G+E+H  
Sbjct: 161 TWNAMIAGLTQFEFNKQALSLFKEMYGL-GFLPDEFTLGSVLRGCAGLRSLLAGQEVHAC 219

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +++ GF+   VV S+L+ MY K GS+++  ++   M  R VV+W  +I    Q G  EE 
Sbjct: 220 LLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEV 279

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
              ++ +  +G RP+  TF  VL+AC++ A    G+Q+H  + + G        S+L+ M
Sbjct: 280 LNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISM 339

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YS+ G +E+S K F      D+V W+S+IA Y  +G  ++ALE F  +     + + + F
Sbjct: 340 YSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTF 399

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           + +L AC+H+GL +KG +YF  + +K+ L    +HY C+VDLL R+GR  EAE +I  MP
Sbjct: 400 LSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMP 459

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++PD  +W +LL  C++H   ++A+R +E + +++P + A+YV ++NI+ASA
Sbjct: 460 VQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASA 511


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/468 (35%), Positives = 282/468 (60%), Gaps = 36/468 (7%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L E+ +I  Q+      P+   Y S+++ C   RA++ G+++H+ +  +GF+  V++S+ 
Sbjct: 454 LNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSV 513

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAK G                                L+ A  +F  + ++D  SW
Sbjct: 514 LIDMYAKLGK-------------------------------LDHALKIFRRLKEKDVVSW 542

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMI+GY ++ +  EAL+L++ MQ+ +   S+    +S +SA + IQ L  G++IH    
Sbjct: 543 TAMIAGYAQHEKFAEALNLFKEMQD-QGIHSDNIGFASAISACAGIQALNQGQQIHAQAC 601

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +G+  D  V +AL  +Y +CG + +A   FDK+  +D +SW ++I  + Q G  EE  +
Sbjct: 602 VSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALS 661

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LFS++ K+G   N+FTF   ++A A+ A  +LGKQ+H  + + G+D  +  ++ L+ +Y+
Sbjct: 662 LFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYA 721

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCGN++++++ F  MP  + +SW +++ GY+Q+G   KAL  FE + + G  P+H+ FVG
Sbjct: 722 KCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVG 781

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLVD+G++YF S++E HGL    +HYAC+VDLL RSG    A   + +MP++
Sbjct: 782 VLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQ 841

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           PD  +  +LL  C +H N+D+ + AA  L E+EP++ ATYV ++N+YA
Sbjct: 842 PDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYA 889



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 207/416 (49%), Gaps = 34/416 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+P I+SS++  C +    + G+++H  +   GF    ++ N L+ +Y++ GN   A+ 
Sbjct: 268 YPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAE- 326

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                          +F+ M QRD  S+ ++ISG  +     +A
Sbjct: 327 ------------------------------QVFNAMLQRDEVSYNSLISGLSQQGYSDKA 356

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L+L++ M   +    +  T++S+LSA S++  L +GK+ H Y ++ G  SD ++  AL D
Sbjct: 357 LELFKKM-CLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLD 415

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y KC  I  A + F      +VV W  M+  Y       E F +F+++   GI PN FT
Sbjct: 416 LYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFT 475

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           +  +L  C+   A +LG+Q+H  + + G+    + +S L+ MY+K G ++++ K+F  + 
Sbjct: 476 YPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK 535

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D+VSWT++IAGYAQ+    +AL  F+ +   G   D+I F   ++AC     +++G Q
Sbjct: 536 EKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG-Q 594

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             H+     G +        +V L AR G+  +A     K+  K D   W SL+ G
Sbjct: 595 QIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSK-DNISWNSLISG 649



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 213/441 (48%), Gaps = 41/441 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQ-NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           ++L +   P    Y+ +++ C   +      +K+H+   + G++  +F+ N L+D+Y K 
Sbjct: 159 RMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKN 218

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G ++ A+ +FD +Q+RD  S+  M+SG ++ G  E+A  LF +M            SG  
Sbjct: 219 GFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMH----------TSGV- 267

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
            Y  P                    +  SSVLSA + ++  ++G+++HG +++ GF  + 
Sbjct: 268 -YPTP--------------------YIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLET 306

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL  +Y + G+   A Q+F+ M+ RD VS+ ++I    Q+G  ++   LF ++   
Sbjct: 307 YVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLD 366

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
            ++P+  T A +L+AC+   A  +GKQ H Y  + G         AL+ +Y KC +++ +
Sbjct: 367 CLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTA 426

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            + F      ++V W  ++  Y      +++ + F  +   G +P+   +  +L  C+  
Sbjct: 427 HEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSL 486

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             VD G Q  H+   K G  +     + ++D+ A+ G+   A  +  ++  K D   W +
Sbjct: 487 RAVDLGEQ-IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK-DVVSWTA 544

Query: 435 LLGGCRIHGNLDLAKRAAEAL 455
           ++ G   H      ++ AEAL
Sbjct: 545 MIAGYAQH------EKFAEAL 559



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 196/422 (46%), Gaps = 41/422 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L+  C  +    +G K+H  +   GF   V +   L+D+Y   G++  A T+FDEM 
Sbjct: 71  YLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMP 130

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALD 144
            R +  +N ++  F  G    +   LF  M Q     D  ++  ++ G    + P   ++
Sbjct: 131 VRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVE 190

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
                                              +IH   +  G+++   V + L D+Y
Sbjct: 191 -----------------------------------KIHARTITHGYENSLFVCNPLIDLY 215

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G +N A+++FD +  RD VSW AM+    Q G  EE   LF ++  SG+ P  + F+
Sbjct: 216 FKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFS 275

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            VL+AC      ++G+Q+HG + + G+   ++  +ALV +YS+ GN   +++VFN M + 
Sbjct: 276 SVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQR 335

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D VS+ SLI+G +Q G  DKALE F+ +     +PD +    +L+AC+  G +  G Q F
Sbjct: 336 DEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-F 394

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           HS   K G++        ++DL  +      A +       + +  LW  +L    +  N
Sbjct: 395 HSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVAYGLLDN 453

Query: 445 LD 446
           L+
Sbjct: 454 LN 455



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 172/340 (50%), Gaps = 50/340 (14%)

Query: 8   QRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
             +  EAL +  ++     H     ++S I  C   +AL +G+++H+    SG+   + +
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSV 611

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            N L+ +YA+CG + DA   FD++  +D  S+N++ISGF + G  E+A +LF +M     
Sbjct: 612 GNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMS---- 667

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
                      +  Q I                 N FT    +SA + +  ++LGK+IH 
Sbjct: 668 -----------KAGQEI-----------------NSFTFGPAVSAAANVANVKLGKQIHA 699

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            I++TG DS+  V + L  +Y KCG+I++A + F +M +++ +SW AM+  Y Q G   +
Sbjct: 700 MIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFK 759

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG-------KQVHGYMTRIGYDPYSF 296
             +LF ++ + G+ PN  TF GVL+AC+     + G       ++VHG + +    P  +
Sbjct: 760 ALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPK----PEHY 815

Query: 297 AASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           A   +V +  + G +  +++    MP +PD +   +L++ 
Sbjct: 816 A--CVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSA 853



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 5/212 (2%)

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           TA+   Y  +     G      + + G+R N+ T+  +L+ C        G ++HG + +
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
           +G+         L+ +Y   G+++ +  VF+ MP   L  W  ++  +    M  + L  
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL 156

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDL 406
           F  +L+   +PD   + GVL  C    +    ++  H+    HG  Y    + C  ++DL
Sbjct: 157 FRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHG--YENSLFVCNPLIDL 214

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             ++G  + A+ V   +  K D   W ++L G
Sbjct: 215 YFKNGFLNSAKKVFDGL-QKRDSVSWVAMLSG 245


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 265/455 (58%), Gaps = 36/455 (7%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS-------- 107
           GF     + N L+DMY KC  + +A  +F+ +    + S+N +I+GF + GS        
Sbjct: 3   GFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVL 62

Query: 108 ---------------------------LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
                                      +  AR +FD++ +    +W  ++SGY +  Q  
Sbjct: 63  SLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQ 122

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           + ++L+R MQ+ +N   ++ TL+ +LS+ S +  L  G+++H   +R    +D  V S L
Sbjct: 123 DTIELFRRMQH-QNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGL 181

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            DMY KCG I  AR IF+KM +RDVV W ++I         +E F  F ++ ++GI P  
Sbjct: 182 VDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTE 241

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            ++A ++N+C+  ++   G+Q+H  + + GYD   +  SAL+ MY+KCGN+++++  F+ 
Sbjct: 242 SSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 301

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   ++V+W  +I GYAQNG+ DKA+E FE +L +  +PD + F+ VLT C+H+GLVDK 
Sbjct: 302 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 361

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           + +F+S++  +G+   A+HY C++D L R+GRF E E +I KMP K D  +W  LL  C 
Sbjct: 362 MAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACV 421

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +H N +L K AAE LF I+P+NP+ YV ++NIYAS
Sbjct: 422 VHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYAS 456



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 37/256 (14%)

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R GF SD+ V ++L DMY KC  ++EA ++F+ +    +VSW  +I  + QEG   +   
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           + S + ++G  PN  T++ +L +C                                    
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCI----------------------------------- 85

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K  +V +++ +F+ + RP + +W +L++GY Q       +E F  +     QPD      
Sbjct: 86  KARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAV 145

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L++C+  G++D G Q  HS   +  L       + +VD+ ++ G+   A  + +KM  +
Sbjct: 146 ILSSCSKLGILDFGRQ-VHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER 204

Query: 427 PDKFLWASLLGGCRIH 442
            D   W S++ G  IH
Sbjct: 205 -DVVCWNSIISGLTIH 219



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 15/199 (7%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA     Q+      P+ S Y+S+I  C +  ++  G+++H+ +   G+   V++ + L
Sbjct: 223 KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSAL 282

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDN 123
           +DMYAKCGN+ DA+  FD M  +++ ++N MI G+ + G  ++A  LF+ M     + D 
Sbjct: 283 IDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 342

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--EI 181
            ++ A+++G        +A+  +  M+N    +      + ++ A+      R G+  E+
Sbjct: 343 VTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALG-----RAGRFVEV 397

Query: 182 HGYIMRTGFDSDEVVWSAL 200
              I +     D ++W  L
Sbjct: 398 EALIHKMPCKDDPIIWEVL 416



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 14/173 (8%)

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           R G+       ++L+ MY+KC  ++ + KVF  +P   +VSW  LI G+ Q G   KA+E
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
              L+ ++G +P+ + +  +L +C  A  V      F  I      T+          LL
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNT--------LL 112

Query: 408 ARSGRFHEAEDVI------SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
           +   +  + +D I          ++PD+   A +L  C   G LD  ++   A
Sbjct: 113 SGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSA 165


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 166/445 (37%), Positives = 270/445 (60%), Gaps = 2/445 (0%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           ++++    N  +  GK++H  +   GF+  + + + LL MYA  G ISDA+ +F  + +R
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +   YN+++ G    G +E A  LF  M ++D+ SW AMI G  +     EA++ +R M+
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMK 262

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             +    +++   SVL A   +  +  GK+IH  I+RT F     V SAL DMY KC  +
Sbjct: 263 -VQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + A+ +FD+M  ++VVSWTAM+  Y Q GR EE   +F ++ +SGI P+ +T    ++AC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A+ ++ E G Q HG     G   Y   +++LV +Y KCG++++S ++FN M   D VSWT
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++++ YAQ G   + ++ F+ +++ G +PD +   GV++AC+ AGLV+KG +YF  +  +
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSE 501

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +G+  +  HY+C++DL +RSGR  EA   I+ MP  PD   W +LL  CR  GNL++ K 
Sbjct: 502 YGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKW 561

Query: 451 AAEALFEIEPENPATYVTMANIYAS 475
           AAE+L E++P +PA Y  +++IYAS
Sbjct: 562 AAESLIELDPHHPAGYTLLSSIYAS 586



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 212/422 (50%), Gaps = 34/422 (8%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           K +H ++  +   P  F+ N ++  YA   + + A+ +FD + + ++ S+N ++  ++K 
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR-MMQNFENSVSNKFTLSS 164
           G + +  + F+++P RD  +W  +I GY        A+  Y  MM++F  +++ + TL +
Sbjct: 86  GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLT-RVTLMT 144

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR- 223
           +L   S+   + LGK+IHG +++ GF+S  +V S L  MY   G I++A+++F  + DR 
Sbjct: 145 MLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRN 204

Query: 224 -----------------------------DVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                                        D VSW AMI    Q G  +E    F E+   
Sbjct: 205 TVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ 264

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G++ + + F  VL AC    A   GKQ+H  + R  +  + +  SAL+ MY KC  +  +
Sbjct: 265 GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           K VF+ M + ++VSWT+++ GY Q G  ++A++ F  + +SG  PDH      ++AC + 
Sbjct: 325 KTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             +++G Q FH      GL +       +V L  + G   ++  + ++M ++ D   W +
Sbjct: 385 SSLEEGSQ-FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTA 442

Query: 435 LL 436
           ++
Sbjct: 443 MV 444



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 163/314 (51%), Gaps = 34/314 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S++  C    A+ EGK++H+ +  + F+  +++ + L+DMY KC  +  A+T+FD M+
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +++V S+  M+ G+ + G  E+A  +F +M QR                           
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDM-QRSGID----------------------- 368

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    + +TL   +SA + +  L  G + HG  + +G      V ++L  +YGKCG
Sbjct: 369 --------PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCG 420

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I+++ ++F++M  RD VSWTAM+  Y Q GR  E   LF ++++ G++P+  T  GV++
Sbjct: 421 DIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVIS 480

Query: 269 ACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDL 326
           AC+     E G++    MT   G  P     S ++ ++S+ G +E + +  NGMP  PD 
Sbjct: 481 ACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDA 540

Query: 327 VSWTSLIAGYAQNG 340
           + WT+L++     G
Sbjct: 541 IGWTTLLSACRNKG 554



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 162/390 (41%), Gaps = 83/390 (21%)

Query: 162 LSSVLSAVSAIQCLRLG--------KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           ++S   +V   QC+ LG        K IHG I+R     +  +++ +   Y    S   A
Sbjct: 1   MASNYYSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYA 60

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPN----AFTFAGVLN 268
           R++FD++   ++ SW  ++  Y + G   E  + F +L  + G+  N     ++ +G++ 
Sbjct: 61  RRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVG 120

Query: 269 ACA--------DHAAE-------------------ELGKQVHGYMTRIGYDPYSFAASAL 301
           A          D +A                     LGKQ+HG + ++G++ Y    S L
Sbjct: 121 AAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPL 180

Query: 302 VHMYSKCGNVENSKKVFNGMP------------------------------RPDLVSWTS 331
           ++MY+  G + ++KKVF G+                                 D VSW +
Sbjct: 181 LYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAA 240

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I G AQNG+  +A+E F  +   G + D   F  VL AC   G +++G Q    I    
Sbjct: 241 MIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIR-- 298

Query: 392 GLTYTADHY---ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             T   DH    + ++D+  +    H A+ V  +M  K +   W +++ G   +G    A
Sbjct: 299 --TNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVG---YGQTGRA 352

Query: 449 KRAAEALFEIEPE--NPATYVTMANIYASA 476
           + A +   +++    +P  Y     I A A
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACA 382


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 273/461 (59%), Gaps = 33/461 (7%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +Q+L +   P+   + S+++ C     L EGK +H  +  SG  P   + N L+++YAKC
Sbjct: 180 IQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC 239

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
                                          GS   A  +F E+P+RD  SWTA+I+G+V
Sbjct: 240 -------------------------------GSANYACKVFGEIPERDVVSWTALITGFV 268

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                   L ++  M   E    N +T  S+L + S++  + LGK++H  I++   D ++
Sbjct: 269 AEGYG-SGLRIFNQMLA-EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGND 326

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL DMY K   + +A  IF++++ RD+ +WT ++  Y Q+G+ E+    F ++ + 
Sbjct: 327 FVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQRE 386

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G++PN FT A  L+ C+  A  + G+Q+H    + G     F ASALV MY+KCG VE++
Sbjct: 387 GVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 446

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + VF+G+   D VSW ++I GY+Q+G   KAL+ FE +L  GT PD + F+GVL+AC+H 
Sbjct: 447 EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHM 506

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GL+++G ++F+S+ + +G+T T +HYAC+VD+L R+G+FHE E  I +M +  +  +W +
Sbjct: 507 GLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWET 566

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +LG C++HGN++  +RAA  LFE+EPE  + Y+ ++N++A+
Sbjct: 567 VLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAA 607



 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 230/451 (50%), Gaps = 39/451 (8%)

Query: 11  LKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L+EA+Q+ + + H     +  I++SLI           G+ +H+ +   GF+  + ISN 
Sbjct: 71  LQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNA 130

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
            + MY K  ++ +    F  M   ++ S N ++SGF    + +Q   +  ++        
Sbjct: 131 FVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQL-------- 182

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                +++ FE    N +T  S+L   ++   L  GK IHG ++
Sbjct: 183 ---------------------LVEGFE---PNMYTFISILKTCASKGDLNEGKAIHGQVI 218

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           ++G + D  +W++L ++Y KCGS N A ++F ++ +RDVVSWTA+I  +  EG    G  
Sbjct: 219 KSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLR 277

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F++++  G  PN +TF  +L +C+  +  +LGKQVH  + +   D   F  +ALV MY+
Sbjct: 278 IFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYA 337

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K   +E+++ +FN + + DL +WT ++AGYAQ+G  +KA++ F  + + G +P+      
Sbjct: 338 KNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLAS 397

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            L+ C+    +D G Q  HS+  K G +      + +VD+ A+ G   +AE V   + + 
Sbjct: 398 SLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VS 455

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            D   W +++ G   HG    A +A EA+ +
Sbjct: 456 RDTVSWNTIICGYSQHGQGGKALKAFEAMLD 486



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 180/347 (51%), Gaps = 10/347 (2%)

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI---EALDLYRMMQN 151
           ++++++ + K  SL+ AR + +EMP +D   W   +S     N P    EA+ L+ +M++
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSA---NSPYPLQEAVQLFYLMRH 83

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
               + N+F  +S++SA +++     G+ IH  + + GF+SD ++ +A   MY K  S+ 
Sbjct: 84  TRIRL-NQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVE 142

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
              Q F  M+  ++ S   ++  +      ++G  +  +L+  G  PN +TF  +L  CA
Sbjct: 143 NGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCA 202

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                  GK +HG + + G +P S   ++LV++Y+KCG+   + KVF  +P  D+VSWT+
Sbjct: 203 SKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTA 262

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           LI G+   G     L  F  +L  G  P+   F+ +L +C+    VD G Q  H+   K+
Sbjct: 263 LITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ-VHAQIVKN 320

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            L         +VD+ A++    +AE + +++ +K D F W  ++ G
Sbjct: 321 SLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG 366



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 34/239 (14%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++ +K  +Q+  +   P+    +S +  C +   L+ G+++HS    +G    +F+++ L
Sbjct: 374 EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASAL 433

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG + DA+ +FD +  RD  S+NT+I G+++ G   +A   F+ M         
Sbjct: 434 VDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAM--------- 484

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                          LD        E +V ++ T   VLSA S +  +  GK+    + +
Sbjct: 485 ---------------LD--------EGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSK 521

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEG 244
             G       ++ + D+ G+ G  +E     ++M +  +V+ W  ++G     G  E G
Sbjct: 522 IYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFG 580



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 51/101 (50%)

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A+ + K++   + + G  P S   S+LV++Y KC +++ +++V   MP  D+  W   ++
Sbjct: 4   AKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLS 63

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
                    +A++ F L+  +  + +  +F  +++A    G
Sbjct: 64  SANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLG 104


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 179/507 (35%), Positives = 291/507 (57%), Gaps = 41/507 (8%)

Query: 10  RLKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           + KEA ++  Q+    + P    + +L+  C  +    +  +V + +   G+   + + N
Sbjct: 124 QFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGN 183

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSY------------------------------ 95
            L+D Y K   +  A  LF EM E D  ++                              
Sbjct: 184 TLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVW 243

Query: 96  -----NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                N ++  ++K  S+  AR LFDEMP++D  S+  +ISGY    +   A DL+R +Q
Sbjct: 244 NVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 303

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
            F      +F  +++LS  S      +G++IH   + T  DS+ +V ++L DMY KCG  
Sbjct: 304 -FTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKF 362

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EA  IF  +  R  V WTAMI  Y Q+G  EEG  LF+++ ++ +  +  TFA +L A 
Sbjct: 363 EEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRAS 422

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  A+  LGKQ+H ++ + G+    F+ SAL+ +Y+KCG+++++ + F  MP  ++VSW 
Sbjct: 423 ASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWN 482

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++I+ YAQNG  +  L+ F+ ++ SG QPD + F+GVL+AC+H+GLV++GL +F+S+ + 
Sbjct: 483 AMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQI 542

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           + L    +HYA +VD+L RSGRF+EAE ++++MP+ PD+ +W+S+L  CRIH N +LA+R
Sbjct: 543 YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 602

Query: 451 AAEALFEIEP-ENPATYVTMANIYASA 476
           AA+ LF +E   + A YV M+NIYA+A
Sbjct: 603 AADQLFNMEELRDAAPYVNMSNIYAAA 629



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 186/400 (46%), Gaps = 45/400 (11%)

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----P 119
           +N ++  Y K GN+ +A+ LFD M ER   ++  +I G+++    ++A  LF +M     
Sbjct: 81  TNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT 140

Query: 120 QRDNFSWTAMISG-----------------------------------YVRYNQPIEALD 144
           + D  ++  ++SG                                   Y + N+   A  
Sbjct: 141 EPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQ 200

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L++ M   ++     FT ++VL A   +  + LG++IH ++++T F  +  V +AL D Y
Sbjct: 201 LFKEMPEIDS-----FTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFY 255

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K  S+ +AR++FD+M ++D VS+  +I  Y  +G+ +  F LF EL  +      F FA
Sbjct: 256 SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFA 315

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            +L+  ++    E+G+Q+H        D      ++LV MY+KCG  E ++ +F  +   
Sbjct: 316 TMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR 375

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
             V WT++I+ Y Q G  ++ L+ F  + ++    D   F  +L A      +  G Q  
Sbjct: 376 SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-L 434

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           HS   K G        + ++D+ A+ G   +A     +MP
Sbjct: 435 HSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 474



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 185/382 (48%), Gaps = 49/382 (12%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           + + +  +GF P    SN  +  + K G +S A+ LF++M  ++  S N MISG+ K G+
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L +AR LFD M +R   +WT +I GY + NQ  EA +L+  MQ    +  +  T  ++LS
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRC-GTEPDYVTFVTLLS 152

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             +  +      ++   I++ G+DS  +V + L D Y K   ++ A Q+F +M + D   
Sbjct: 153 GCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEID--- 209

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE--LGKQVHGY 285
                                           +FTFA VL  CA+   ++  LG+Q+H +
Sbjct: 210 --------------------------------SFTFAAVL--CANIGLDDIVLGQQIHSF 235

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + +  +    F ++AL+  YSK  +V +++K+F+ MP  D VS+  +I+GYA +G    A
Sbjct: 236 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA 295

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI-- 403
            + F  L  +        F  +L+  ++    + G Q  H+      +  TAD    +  
Sbjct: 296 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ-IHA----QTIVTTADSEILVGN 350

Query: 404 --VDLLARSGRFHEAEDVISKM 423
             VD+ A+ G+F EAE + + +
Sbjct: 351 SLVDMYAKCGKFEEAEMIFTNL 372



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 35/275 (12%)

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD-------------------- 193
           N++ N  +L+S+ S  S    L +   I   I++TGFD D                    
Sbjct: 7   NALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQA 66

Query: 194 -----------EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
                       V  + +   Y K G++ EAR++FD MV+R  V+WT +IG Y Q  + +
Sbjct: 67  RQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFK 126

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E F LF ++ + G  P+  TF  +L+ C  H       QV   + ++GYD      + LV
Sbjct: 127 EAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLV 186

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL--EYFELLLKSGTQPD 360
             Y K   ++ + ++F  MP  D  ++ +++   A  G+ D  L  +    ++K+    +
Sbjct: 187 DSYCKSNRLDLACQLFKEMPEIDSFTFAAVLC--ANIGLDDIVLGQQIHSFVIKTNFVWN 244

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
             V   +L   +    V    + F  + E+ G++Y
Sbjct: 245 VFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 279



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 139/316 (43%), Gaps = 73/316 (23%)

Query: 12  KEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +E LQ+ +++   S     + ++SL++      +L  GK++HS +  SGF   VF  + L
Sbjct: 394 EEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSAL 453

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           LD+YAKCG+I DA   F EM +R++ S+N MIS + + G  E     F EM         
Sbjct: 454 LDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEM--------- 504

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            ++SG     QP              +SVS       VLSA S           H  ++ 
Sbjct: 505 -VLSGL----QP--------------DSVS----FLGVLSACS-----------HSGLVE 530

Query: 188 TGFDSDEVVW--SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
            G      +W  ++++ +Y     ++  R+ +  +VD        M+ R    GR  E  
Sbjct: 531 EG------LWHFNSMTQIY----KLDPRREHYASVVD--------MLCR---SGRFNEAE 569

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            L +E+    I P+   ++ VLNAC  H  +EL ++    +  +     +     + ++Y
Sbjct: 570 KLMAEM---PIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIY 626

Query: 306 SKCGNVENSKKVFNGM 321
           +  G  EN  KV   M
Sbjct: 627 AAAGQWENVSKVHKAM 642



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 37/215 (17%)

Query: 257 RPNAFTFAGVLNACADHAAEELG----KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           RPNA      L + A   + +L       +   + + G+DP +  ++  V  + K G + 
Sbjct: 5   RPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELS 64

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQ-----------NGMPDK----------------- 344
            ++++F  MP  + VS   +I+GY +           +GM ++                 
Sbjct: 65  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 124

Query: 345 ---ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              A E F  + + GT+PD++ FV +L+ C    + ++  Q    I  K G         
Sbjct: 125 FKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQII-KLGYDSRLIVGN 183

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            +VD   +S R   A  +  +MP + D F +A++L
Sbjct: 184 TLVDSYCKSNRLDLACQLFKEMP-EIDSFTFAAVL 217


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/478 (37%), Positives = 278/478 (58%), Gaps = 35/478 (7%)

Query: 2   IDILCNQRRLKEAL-QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           +  LC+ R+LKEAL ++  Q        Y S++  C    A+ EG++VH+H+  + ++P 
Sbjct: 452 LKTLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPP 511

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V++   L+ +Y KC  + DA                               R + DEMP+
Sbjct: 512 VYLRTRLIVLYNKCRCLGDA-------------------------------RRVLDEMPE 540

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R+  SWTAMISGY +     EAL L+  M     +  N+FT ++VL++ ++    +LG++
Sbjct: 541 RNVVSWTAMISGYSQRGYASEALHLFVEML-MSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH  +++T F+S   V S+L DMY K G I EAR++FD + +RDVVS TA+I  Y Q G 
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF  L + G+R N  T+A VL A +  AA + G+QVH ++ R     Y    ++
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 719

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQP 359
           L+ MYSKCG++  S+++F+ MP   ++SW +++ GY+++G+  +A+E F+L+ +    +P
Sbjct: 720 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 779

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHS-IKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           D + F+ VL+ C+H G+ D+GL+ F+  + +K G     +HY C+VDL  R+GR  EA +
Sbjct: 780 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 839

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            I KMP +P   +W SLLG CR+H N+ + +  A  L EIE EN   YV ++N+YASA
Sbjct: 840 FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASA 897


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/450 (39%), Positives = 260/450 (57%), Gaps = 39/450 (8%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           PS++ S    C       EGK++H H    GF    +I N L++MY+ CG          
Sbjct: 144 PSLFKSCGVLC-------EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCG---------- 186

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
                                 L  AR +FD+M  +   SW  MI  Y +++ P EA+ L
Sbjct: 187 ---------------------CLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKL 225

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           +R M+   +   N+ TL +VL+A +  + L   K++H YI  TG     V+ SAL D+Y 
Sbjct: 226 FRRME-IASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYC 284

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KCG    AR +F+KM ++++  W  MI  + ++   EE  +LF+E+  SG++ +  T A 
Sbjct: 285 KCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMAS 344

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +L AC    A ELGK +H Y+ +   +      +ALV MY+KCG++E++ +VF  MP  D
Sbjct: 345 LLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKD 404

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +++WT+LI G A  G   KALE F  +  S  +PD I FVGVL AC+HAGLV++G+ YF+
Sbjct: 405 VMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFN 464

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           S+  K+G+  + +HY C+VD+L R+GR  EAED+I  MPM PD F+   LL  CRIHGNL
Sbjct: 465 SMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNL 524

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +A+RAA+ L E++P+N  TYV ++NIY+S
Sbjct: 525 VVAERAAQQLIELDPKNGGTYVLLSNIYSS 554



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 192/385 (49%), Gaps = 13/385 (3%)

Query: 66  CLLDMYAKCGNISDAQTLFDEMQER----DVCSYNTMIS--GFTKGGSLEQARNLFDEMP 119
           CLL +  KC  +S  + +  +M       D  S + +++       GSL  AR +F+++P
Sbjct: 43  CLLSL-EKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIP 101

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
               F+  ++I GY   N P +A+  Y++M   +    ++FT  S+  +      L  GK
Sbjct: 102 NPTTFTCNSIIRGYTNKNLPRQAILFYQLMM-LQGLDPDRFTFPSLFKSCGV---LCEGK 157

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           ++H +  + GF SD  + + L +MY  CG +  AR++FDKMV++ VVSW  MIG Y Q  
Sbjct: 158 QLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWD 217

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              E   LF  +  + ++PN  T   VL ACA     E  KQVH Y+   G   ++   S
Sbjct: 218 LPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTS 277

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ +Y KCG    ++ +FN MP  +L  W  +I G+ ++   ++AL  F  +  SG + 
Sbjct: 278 ALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKG 337

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D +    +L ACTH G ++ G ++ H   EK  +         +VD+ A+ G    A  V
Sbjct: 338 DKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGN 444
             +MP K D   W +L+ G  + G 
Sbjct: 397 FQEMPEK-DVMTWTALIVGLAMCGQ 420



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 19/203 (9%)

Query: 280 KQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           KQ+H  M R  +  DP+S +           G++  ++ VFN +P P   +  S+I GY 
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYT 396
              +P +A+ +++L++  G  PD   F  +  +C   G++ +G Q + HS K    L + 
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTK----LGFA 169

Query: 397 ADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
           +D Y    ++++ +  G    A  V  KM  K     WA+++G    +   DL   A + 
Sbjct: 170 SDAYIQNTLMNMYSNCGCLVSARKVFDKMVNK-SVVSWATMIGA---YAQWDLPHEAIKL 225

Query: 455 L--FEIEPENPATYVTMANIYAS 475
               EI    P   +T+ N+  +
Sbjct: 226 FRRMEIASVKP-NEITLVNVLTA 247


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 184/483 (38%), Positives = 285/483 (59%), Gaps = 22/483 (4%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R+ E L I      P      +++  C    A   GK+VH +   SG    VF+ N ++D
Sbjct: 220 RMTEDLGI-----RPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVD 274

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFS 125
           MYAKCG + +A  +F+ M+ +DV S+N M++G+++ G  + A  LF+++ +     +  +
Sbjct: 275 MYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVT 334

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W+A+I+GY +     EALD++R M+    S  N  TL S+LS  +    L  GKE H + 
Sbjct: 335 WSAVIAGYAQRGLGFEALDVFRQMR-LCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHA 393

Query: 186 MRTGFDSDE-------VVWSALSDMYGKCGSINEARQIFDKMV--DRDVVSWTAMIGRYF 236
           ++   + DE       +V +AL DMY KC S   AR +FD +   DR VV+WT +IG   
Sbjct: 394 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 453

Query: 237 QEGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-P 293
           Q G   E   LFS++++    + PNAFT +  L ACA   A   G+Q+H Y+ R  ++  
Sbjct: 454 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 513

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F A+ L+ MYSK G+V+ ++ VF+ M + + VSWTSL+ GY  +G  ++AL+ F  + 
Sbjct: 514 MLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQ 573

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           K G  PD + FV VL AC+H+G+VD+G+ YF+ + +  G+   A+HYAC+VDLL+R+GR 
Sbjct: 574 KVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRL 633

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            EA ++I  MPMKP   +W +LL  CR++ N++L + AA  L E+E  N  +Y  ++NIY
Sbjct: 634 DEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 693

Query: 474 ASA 476
           A+A
Sbjct: 694 ANA 696



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 229/509 (44%), Gaps = 102/509 (20%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L++ LQ+  ++      P    +  +++ C +  +   G  VH+ + +SGF+  VF+ N 
Sbjct: 107 LEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNG 166

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DN 123
           L+ MY +CG                               + E AR +FDEM +R   D 
Sbjct: 167 LVSMYGRCG-------------------------------AWENARQVFDEMRERGVGDL 195

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SW ++++ Y++    I A+ ++  M        +  +L +VL A +++     GK++HG
Sbjct: 196 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHG 255

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y +R+G   D  V +A+ DMY KCG + EA ++F++M  +DVVSW AM+  Y Q GR ++
Sbjct: 256 YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDD 315

Query: 244 GFALFSELIKS-----------------------------------GIRPNAFTFAGVLN 268
              LF ++ +                                    G  PN  T   +L+
Sbjct: 316 ALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLS 375

Query: 269 ACADHAAEELGKQVHGYMTRIGY-----DPYS--FAASALVHMYSKCGNVENSKKVFNGM 321
            CA       GK+ H +  +        DP       +AL+ MYSKC + + ++ +F+ +
Sbjct: 376 GCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLI 435

Query: 322 PRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT------ACTH 373
           P  D  +V+WT LI G AQ+G  ++ALE F  +L    QPD+ V     T      AC  
Sbjct: 436 PPKDRSVVTWTVLIGGNAQHGEANEALELFSQML----QPDNFVMPNAFTISCALMACAR 491

Query: 374 AGLVDKGLQ---YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
            G +  G Q   Y    + +  + + A+   C++D+ ++SG    A  V   M  + +  
Sbjct: 492 LGALRFGRQIHAYVLRNRFESAMLFVAN---CLIDMYSKSGDVDAARVVFDNMHQR-NGV 547

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIE 459
            W SL+ G  +HG     + A +  +E++
Sbjct: 548 SWTSLMTGYGMHGR---GEEALQIFYEMQ 573



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 177/386 (45%), Gaps = 51/386 (13%)

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           F W  +I   V      + L LYR MQ       + +T   VL A   I   R G  +H 
Sbjct: 92  FWWNQLIRRSVHLGFLEDVLQLYRRMQRL-GWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGR 240
            +  +GF+ +  V + L  MYG+CG+   ARQ+FD+M +R   D+VSW +++  Y Q G 
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 241 REEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
                 +F  + +  GIRP+A +   VL ACA   A   GKQVHGY  R G     F  +
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 270

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVS------------------------------- 328
           A+V MY+KCG +E + KVF  M   D+VS                               
Sbjct: 271 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 330

Query: 329 ----WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-Y 383
               W+++IAGYAQ G+  +AL+ F  +   G++P+ +  V +L+ C  AG +  G + +
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

Query: 384 FHSIKEKHGLTYT--ADHYACI---VDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLG 437
            H+IK    L      D    I   +D+ ++      A  +   +P K    + W  L+G
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450

Query: 438 GCRIHGNLDLAKRAAEALFE-IEPEN 462
           G   HG    A  A E   + ++P+N
Sbjct: 451 GNAQHGE---ANEALELFSQMLQPDN 473


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/449 (37%), Positives = 274/449 (61%), Gaps = 33/449 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
            Y++L++ C   + L +G+ VH HL  S F+  + ++N LL+MYAKC             
Sbjct: 53  FYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKC------------- 99

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                             GSLE+AR +FD+MP+RD  +WT +ISGY ++++P +AL L+ 
Sbjct: 100 ------------------GSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFN 141

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M  F  S  N+FTLSSV+ A +A +    G ++HG+ ++ GFDS+  V SAL D+Y + 
Sbjct: 142 QMLRFGFS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRY 200

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G +++A+ +FD +  R+ VSW A+I  + +    E+   LF  +++ G RP+ F++A + 
Sbjct: 201 GLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLF 260

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC+     E GK VH YM + G    +FA + L+ MY+K G++ +++K+F+ + + D+V
Sbjct: 261 GACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVV 320

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW SL+  YAQ+G  ++A+ +FE + + G +P+ I F+ VLTAC+H+GL+D+G  Y+  +
Sbjct: 321 SWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELM 380

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K K G+   A HY  IVDLL R+G  + A   I +MP++P   +W +LL  CR+H N +L
Sbjct: 381 K-KDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTEL 439

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
              AAE +FE++P++P  +V + NIYAS 
Sbjct: 440 GAYAAEHVFELDPDDPGPHVILYNIYASG 468



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 144/311 (46%), Gaps = 33/311 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS+I+     R    G ++H      GF   V + + LLD+Y + G + DAQ +
Sbjct: 150 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 209

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD ++ R+  S+N +I+G  +    E+A  LF  M                         
Sbjct: 210 FDALESRNDVSWNALIAGHARRCGTEKALELFQGM------------------------- 244

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
               + + F  S    F+ +S+  A S+   L  GK +H Y++++G        + L DM
Sbjct: 245 ----LREGFRPS---HFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 297

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K GSI++AR+IFD++  RDVVSW +++  Y Q G   E    F E+ + GIRPN  +F
Sbjct: 298 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISF 357

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
             VL AC+     + G   +  M + G    ++    +V +  + G++  + +    MP 
Sbjct: 358 LSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPI 417

Query: 323 RPDLVSWTSLI 333
            P    W +L+
Sbjct: 418 EPTAAIWKALL 428



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 113/275 (41%), Gaps = 67/275 (24%)

Query: 6   CNQRRLKEALQ-ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           C   +  E  Q +L +   PS   Y+SL   C     LE+GK VH+++  SG K   F  
Sbjct: 232 CGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG 291

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LLDMYAK G+I DA+ +FD + +RDV S+N++++ + + G   +A   F+EM +    
Sbjct: 292 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRR---- 347

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                  G +R                      N+ +  SVL+A S    L  G   +  
Sbjct: 348 -------GGIR---------------------PNEISFLSVLTACSHSGLLDEGWHYYEL 379

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           + + G   +   +  + D+ G+ G +N A +  ++M                        
Sbjct: 380 MKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEM------------------------ 415

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
                      I P A  +  +LNAC  H   ELG
Sbjct: 416 ----------PIEPTAAIWKALLNACRMHKNTELG 440


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 179/485 (36%), Positives = 289/485 (59%), Gaps = 16/485 (3%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D  C   RL  A Q+  ++       Y+++I    ++   E+   +   +++SG KP  
Sbjct: 191 VDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTE 250

Query: 62  FISNCLLDMYAKCGNIS-DAQTLFDEMQE--------RDVCSYNTMISGFTKGGSLEQAR 112
           F    +L     C NI  D   L  ++           +V   N ++  ++K  S+  AR
Sbjct: 251 FTFAAVL-----CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDAR 305

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172
            LFDEMP++D  S+  +ISGY    +   A DL+R +Q F      +F  +++LS  S  
Sbjct: 306 KLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ-FTAFDRKQFPFATMLSIASNT 364

Query: 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
               +G++IH   + T  DS+ +V ++L DMY KCG   EA  IF  +  R  V WTAMI
Sbjct: 365 LDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMI 424

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y Q+G  EEG  LF+++ ++ +  +  TFA +L A A  A+  LGKQ+H ++ + G+ 
Sbjct: 425 SAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFM 484

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              F+ SAL+ +Y+KCG+++++ + F  MP  ++VSW ++I+ YAQNG  +  L+ F+ +
Sbjct: 485 SNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEM 544

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           + SG QPD + F+GVL+AC+H+GLV++GL +F+S+ + + L    +HYA +VD+L RSGR
Sbjct: 545 VLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGR 604

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMAN 471
           F+EAE ++++MP+ PD+ +W+S+L  CRIH N +LA+RAA+ LF +E   + A YV M+N
Sbjct: 605 FNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSN 664

Query: 472 IYASA 476
           IYA+A
Sbjct: 665 IYAAA 669



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 205/382 (53%), Gaps = 14/382 (3%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           + + +  +GF P    SN  +  + K G +S A+ LF++M  ++  S N MISG+ K G+
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L +AR LFD M +R   +WT +I GY + NQ  EA +L+  MQ    +  +  T  ++LS
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRC-GTEPDYVTFVTLLS 157

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             +  +      ++   I++ G+DS  +V + L D Y K   ++ A Q+F +M + D VS
Sbjct: 158 GCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVS 217

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE--LGKQVHGY 285
           + AMI  Y ++G  E+   LF E+  SG++P  FTFA VL  CA+   ++  LG+Q+H +
Sbjct: 218 YNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSF 275

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + +  +    F ++AL+  YSK  +V +++K+F+ MP  D VS+  +I+GYA +G    A
Sbjct: 276 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA 335

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI-- 403
            + F  L  +        F  +L+  ++    + G Q  H+      +  TAD    +  
Sbjct: 336 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ-IHA----QTIVTTADSEILVGN 390

Query: 404 --VDLLARSGRFHEAEDVISKM 423
             VD+ A+ G+F EAE + + +
Sbjct: 391 SLVDMYAKCGKFEEAEMIFTNL 412



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 3/222 (1%)

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G++ EAR++FD MV+R  V+WT +IG Y Q  + +E F LF ++ + G  P+  TF
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L+ C  H       QV   + ++GYD      + LV  Y K   ++ + ++F  MP 
Sbjct: 153 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPE 212

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-Q 382
            D VS+ ++I GY+++G+ +KA+  F  +  SG +P    F  VL  C + GL D  L Q
Sbjct: 213 IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQ 270

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             HS   K    +       ++D  ++     +A  +  +MP
Sbjct: 271 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP 312


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 271/471 (57%), Gaps = 4/471 (0%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLI-QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
            + L EA+  LH+     PS    L+ + C  + A  +G + H H    G    VF+   
Sbjct: 59  HQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTA 118

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D YAK GN+  A   F+EM  +D    N +I+G+++ G +E+AR LFD MP++ + SW
Sbjct: 119 LVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASW 178

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            +MI+ Y    +  EAL L+  M   E +  N  T+++V S  +    L  G+    ++ 
Sbjct: 179 NSMIACYAHGGEFQEALTLFDQMLR-EGASPNAITITTVFSICAKTGDLETGRRAKAWVS 237

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
                 + +V +AL +MY KC +I+EAR+ FD+M  RDVV+W+ MI  Y   GR  E   
Sbjct: 238 EEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLE 296

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF  +  +  +PN  T  GVL+ACA   ++ELG+Q+  Y+        S+  SAL+ MY+
Sbjct: 297 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYT 356

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG+V  ++ VF+ M +  +++W S+I G A NG  + A+  +  ++  G QP+ I F+ 
Sbjct: 357 KCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLA 416

Query: 367 VLTACTHAGLVDKGLQYFHSIKE-KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           +LTACTHAGLVDKG+ +F  +K+ K   +   +H ACIVDLL +SGR  EA   I  M +
Sbjct: 417 LLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEV 476

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +P+  +W +LL  CR H +++LAK AA  L  +EP + + YV ++NIYA A
Sbjct: 477 EPNAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADA 527


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  337 bits (863), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 168/461 (36%), Positives = 269/461 (58%), Gaps = 14/461 (3%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD--- 79
           +P  +++ S+++ C     L  G+ +H ++   G    ++  N L++MY+K   + +   
Sbjct: 103 YPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGR 162

Query: 80  ----AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
               A  +FDEM ER        +       S +  R +F+ MP++D  SW  +I+G  R
Sbjct: 163 QRLGAGEVFDEMTERTRSVRTVSVL------SEDSVRKIFEMMPEKDLVSWNTIIAGNAR 216

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                E L + R M    N   + FTLSSVL  ++    +  GKEIHG  +R G D+D  
Sbjct: 217 NGLYEETLRMIREMGG-ANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIY 275

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V S+L DMY KC  + ++ ++F  + +RD +SW ++I    Q G  +EG   F +++ + 
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK 335

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           I+P +++F+ ++ ACA      LGKQ+HGY+TR G+D   F AS+LV MY+KCGN+  +K
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           ++F+ M   D+VSWT++I G A +G    A+E FE +   G +P+H+ F+ VLTAC+H G
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGG 455

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LVD+  +YF+S+    G+    +HYA + DLL R+GR  EA D I  M + P   +WA+L
Sbjct: 456 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATL 515

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           L  CR+H N+D+A++ A  + E++P N   Y+ +ANIY++A
Sbjct: 516 LSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAA 556



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 184/387 (47%), Gaps = 40/387 (10%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVL 166
           L  +  LF+ +      +W ++I  Y  +  P ++L  +  M+ +      N F   SVL
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF--PSVL 113

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA------------- 213
            + + +  L LG+ +HGYI+R G D D    +AL +MY K   + E+             
Sbjct: 114 KSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDE 173

Query: 214 -------------------RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                              R+IF+ M ++D+VSW  +I    + G  EE   +  E+  +
Sbjct: 174 MTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGA 233

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
            ++P++FT + VL   A++     GK++HG   R G D   + AS+L+ MY+KC  V +S
Sbjct: 234 NLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADS 293

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            +VF  +   D +SW S+IAG  QNG+ D+ L +F  +L +  +P    F  ++ AC H 
Sbjct: 294 CRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHL 353

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             +  G Q  H    ++G        + +VD+ A+ G    A+ +  +M ++ D   W +
Sbjct: 354 TTLHLGKQ-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTA 411

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPE 461
           ++ GC +HG    A  A E   ++E E
Sbjct: 412 MIMGCALHGQ---APDAIELFEQMETE 435



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 126/282 (44%), Gaps = 38/282 (13%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y     ++++ ++F+ +     ++W ++I  Y   G   +    F  ++ SG+ P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS-------- 314
           F  VL +CA      LG+ +HGY+ R+G D   +  +AL++MYSK   +E S        
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 315 ------------------------KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                                   +K+F  MP  DLVSW ++IAG A+NG+ ++ L    
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLA 408
            +  +  +PD      VL        + +G +  H    + GL   AD Y  + ++D+ A
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRG-KEIHGCSIRQGL--DADIYVASSLIDMYA 285

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +  R  ++  V + +  + D   W S++ GC  +G  D   R
Sbjct: 286 KCTRVADSCRVFTLLTER-DGISWNSIIAGCVQNGLFDEGLR 326



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 145/317 (45%), Gaps = 33/317 (10%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L     P    +SS++  C     L  GK++H ++  +GF   +FI++ L+DMYAKCG
Sbjct: 330 QMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCG 389

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMIS 131
           NI  A+ +FD M+ RD+ S+  MI G    G    A  LF++M     + ++ ++ A+++
Sbjct: 390 NIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLT 449

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLGK--EIHGYIMR 187
                    EA   +       NS++  F ++  +   +A+  L  R G+  E + +I  
Sbjct: 450 ACSHGGLVDEAWKYF-------NSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICG 502

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA--MIGRYFQEGRR-EEG 244
                   +W+ L        +I+ A ++ +++++ D  +  A  ++   +   RR +E 
Sbjct: 503 MHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEA 562

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM----TRIGYDPYSFAASA 300
               + + + GIR           AC   +  E+  +V+ +M    +   Y+    A   
Sbjct: 563 AKWRASMRRIGIRKTP--------AC---SWIEVKNKVYAFMAGDESHPCYEKIREAMEV 611

Query: 301 LVHMYSKCGNVENSKKV 317
           LV +  K G V ++ +V
Sbjct: 612 LVELMEKEGYVPDTSEV 628


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/473 (37%), Positives = 281/473 (59%), Gaps = 10/473 (2%)

Query: 13  EALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL    Q++H    P    Y S+++ C +   +  GKK+H+ + +S     +F+ N L+
Sbjct: 177 EALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLV 236

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNF 124
            MYAK G +S A+ LF+ M ERD  S+NTMISG+   G  ++A  LF +M     + +  
Sbjct: 237 SMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNII 296

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +W  +  G V+     EAL+L   M+++   + +  T+   L A S I  ++LG+EIHG 
Sbjct: 297 TWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIG-LGACSHIGAIKLGREIHGS 355

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            +R+ +D  + V +AL  MY +C  +  A  +F     +++++W +M+  Y    R EE 
Sbjct: 356 AIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEA 415

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY-MTRIGYDPYSFAASALVH 303
             LF E++ SGI PN  T A +L  CA  A  + GK+ H Y + R G+  Y    ++LV 
Sbjct: 416 SFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVD 475

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY++ G V  +K++F+ + R D V++TSLIAGY   G   +AL+ F+ + K   +PDH+ 
Sbjct: 476 MYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVT 535

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            V VL+AC+H+GLV +G++ F  +   +G+    +H+AC+VDL  R+G  H+A+++I++M
Sbjct: 536 MVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRM 595

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P +P   +WA+LLG CRIHGN ++ + AAE L E+ PEN   YV +AN+YA+A
Sbjct: 596 PYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAA 648



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 208/477 (43%), Gaps = 82/477 (17%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           ++L +GK++H+ + S GF+    I   L+  Y     ++DA T                 
Sbjct: 107 KSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHT----------------- 149

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
                   + +  N+   +P      W  +IS YVR     EAL  Y+ M + +    +K
Sbjct: 150 --------ITENSNILHPLP------WNLLISSYVRNGLHGEALSAYKQMTH-KGIRPDK 194

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
           FT  SVL A      +  GK++H  I  +    +  V ++L  MY K G ++ AR +F+ 
Sbjct: 195 FTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFEN 254

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV------------- 266
           M++RD VSW  MI  Y  +G  +E F LF ++   GI  N  T+  +             
Sbjct: 255 MLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEA 314

Query: 267 ----------------------LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
                                 L AC+   A +LG+++HG   R  YD      +AL+ M
Sbjct: 315 LELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITM 374

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YS+C  + ++  +F      ++++W S+++GY      ++A   F  +L SG +P+++  
Sbjct: 375 YSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTI 434

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             +L  C     +  G ++   I  + G       +  +VD+ ARSG+  EA+ +   + 
Sbjct: 435 ASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSIS 494

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPENPATYVTMANIYAS 475
            + D+  + SL+ G  I G      R A  LF+      I+P+    +VTM  + ++
Sbjct: 495 RR-DEVTYTSLIAGYGIQGE----GREALKLFDEMKKRHIKPD----HVTMVAVLSA 542



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 3/239 (1%)

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           ++ L  GK++H  I+  GF+   ++   L   Y     + +A  I +       + W  +
Sbjct: 106 LKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLL 165

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  Y + G   E  + + ++   GIRP+ FT+  VL AC +      GK++H  +     
Sbjct: 166 ISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCL 225

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
               F  ++LV MY+K G +  ++ +F  M   D VSW ++I+GYA  GM  +A E F  
Sbjct: 226 GWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGK 285

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
           +   G + + I +  +   C  +G  ++ L+    ++  +G+    D  A I+ L A S
Sbjct: 286 MRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRS-YGI--DMDSVATIIGLGACS 341


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 273/473 (57%), Gaps = 10/473 (2%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNCL 67
           EAL +  ++      P+    +S +  C     L  G+++H + +K       + + N L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDN 123
           +D YAKC ++  A+  F  +++ D+ S+N M++G+   GS E+A  L  EM     + D 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W  +++G+ +Y     AL+ ++ M +      N  T+S  L+A   ++ L+LGKEIHG
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMD-PNTTTISGALAACGQVRNLKLGKEIHG 523

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R   +    V SAL  MY  C S+  A  +F ++  RDVV W ++I    Q GR   
Sbjct: 524 YVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVN 583

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              L  E+  S +  N  T    L AC+  AA   GK++H ++ R G D  +F  ++L+ 
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLID 643

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY +CG+++ S+++F+ MP+ DLVSW  +I+ Y  +G    A+  F+     G +P+HI 
Sbjct: 644 MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHIT 703

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F  +L+AC+H+GL+++G +YF  +K ++ +    + YAC+VDLL+R+G+F+E  + I KM
Sbjct: 704 FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM 763

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P +P+  +W SLLG CRIH N DLA+ AA  LFE+EP++   YV MANIY++A
Sbjct: 764 PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAA 816



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 231/522 (44%), Gaps = 83/522 (15%)

Query: 2   IDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +++ C     +E +++ + + +    P   ++  + + C + +    GK V+ ++ S GF
Sbjct: 162 MEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGF 221

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +    +   +LDM+ KCG +  A+  F+E++ +DV  +N M+SG+T  G  ++A     +
Sbjct: 222 EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISD 281

Query: 118 MP----QRDNFSWTAMISGYVRYNQ----------------------------------- 138
           M     + D  +W A+ISGY +  Q                                   
Sbjct: 282 MKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNG 341

Query: 139 -PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVV 196
              EAL ++R M   E    N  T++S +SA + +  LR G+EIHGY ++    DSD +V
Sbjct: 342 YDFEALSVFRKMV-LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 400

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L D Y KC S+  AR+ F  +   D+VSW AM+  Y   G  EE   L SE+   GI
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGI 460

Query: 257 R-----------------------------------PNAFTFAGVLNACADHAAEELGKQ 281
                                               PN  T +G L AC      +LGK+
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +HGY+ R   +  +   SAL+ MYS C ++E +  VF+ +   D+V W S+I+  AQ+G 
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              AL+    +  S  + + +  V  L AC+    + +G +  H    + GL        
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG-KEIHQFIIRCGLDTCNFILN 639

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            ++D+  R G   ++  +   MP + D   W  ++    +HG
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNVMISVYGMHG 680



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 209/469 (44%), Gaps = 93/469 (19%)

Query: 11  LKEALQILHQISHPSP----SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L  A  +L  +   +P     IY+S++Q CR+   L  G +VH+ L  +G     F+ + 
Sbjct: 70  LNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSR 129

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LL++Y + G + DA+ +FD+M ER+V                               FSW
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNV-------------------------------FSW 158

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TA++  Y       E + L+ +M N E    + F    V  A S ++  R+GK+++ Y++
Sbjct: 159 TAIMEMYCGLGDYEETIKLFYLMVN-EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYML 217

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             GF+ +  V  ++ DM+ KCG ++ AR+ F+++  +DV  W  M+  Y  +G  ++   
Sbjct: 218 SIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALK 277

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
             S++  SG++P+  T+                                   +A++  Y+
Sbjct: 278 CISDMKLSGVKPDQVTW-----------------------------------NAIISGYA 302

Query: 307 KCGNVENSKKVFNGMP-----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + G  E + K F  M      +P++VSWT+LIAG  QNG   +AL  F  ++  G +P+ 
Sbjct: 303 QSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNS 362

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY-------ACIVDLLARSGRFH 414
           I     ++ACT+  L+  G       +E HG     +           +VD  A+  R  
Sbjct: 363 ITIASAVSACTNLSLLRHG-------REIHGYCIKVEELDSDLLVGNSLVDYYAKC-RSV 414

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA-KRAAEALFE-IEPE 461
           E       M  + D   W ++L G  + G+ + A +  +E  F+ IEP+
Sbjct: 415 EVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPD 463



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 32/367 (8%)

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R + +    I+GF+ GGS+ +   L +           AM+   +    P E +++Y   
Sbjct: 46  RKLTNARQRITGFSGGGSVHRNGVLNN----------AAMLLSSMDLTNPDECIEIY--- 92

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                        +S+L     +  LRLG ++H  ++  G D  E + S L ++Y + G 
Sbjct: 93  -------------ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 139

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + +AR++FDKM +R+V SWTA++  Y   G  EE   LF  ++  G+RP+ F F  V  A
Sbjct: 140 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 199

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C++     +GK V+ YM  IG++  S    +++ M+ KCG ++ +++ F  +   D+  W
Sbjct: 200 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 259

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
             +++GY   G   KAL+    +  SG +PD + +  +++    +G  ++  +YF  +  
Sbjct: 260 NIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGG 319

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM---KPDKFLWASLLGGCRIHGNLD 446
                     +  ++    ++G   EA  V  KM +   KP+    AS +  C    NL 
Sbjct: 320 LKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACT---NLS 376

Query: 447 LAKRAAE 453
           L +   E
Sbjct: 377 LLRHGRE 383


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/433 (38%), Positives = 260/433 (60%), Gaps = 2/433 (0%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           +G++VH H    G    VF+   L+D YAK G++  A ++FDEM  +D    N +I+G++
Sbjct: 137 QGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYS 196

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           K G +++AR LFD M +R + SW +MI+ Y    +  EAL L+  M + E +  N  T++
Sbjct: 197 KAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLS-EGARPNAITIT 255

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SV S  +    L  GK +   I       + +V +AL +MY KC +I++AR+ FD+M  R
Sbjct: 256 SVFSICAKSGDLDTGKRVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARREFDRMSQR 314

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVV+W+ MI  Y Q GR  E   LF  +  +  RPN  T  GV++ACA   ++EL +Q+ 
Sbjct: 315 DVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIG 374

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y         S+  SAL+ MY++CG+V  ++ VF+ M +  +++W S+I G A NG  +
Sbjct: 375 NYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAE 434

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
            A+  +E + ++G QP+ I FV +L ACTHAGLVD+G+ +F  +K +H ++   +H ACI
Sbjct: 435 DAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACI 494

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLL +SG   EA   I  M ++P+  +W +LL  CR H +++LAK A+  L  +EP+N 
Sbjct: 495 VDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNS 554

Query: 464 ATYVTMANIYASA 476
           + YV ++NIYA A
Sbjct: 555 SIYVLLSNIYADA 567



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 185/404 (45%), Gaps = 44/404 (10%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-SNKF 160
           F+   +   ARNLFD +P+      +  +S   R +   + L  +  M      V S   
Sbjct: 63  FSDATTSRAARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCV 122

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG--------------- 205
            L     A++A  C   G+++H + +  G   D  V +AL D Y                
Sbjct: 123 PLVFKSCALTASSC--QGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEM 180

Query: 206 ----------------KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
                           K G +++AR++FD M  R   SW +MI  Y   G   E   LF 
Sbjct: 181 PVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFD 240

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSK 307
            ++  G RPNA T   V + CA     + GK+V      IG D        +AL+ MY K
Sbjct: 241 RMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDL---IGEDDLQNVIVHTALMEMYVK 297

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           C  ++++++ F+ M + D+V+W+++IAGYAQNG P ++LE FE +  +  +P+ +  VGV
Sbjct: 298 CRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGV 357

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           ++AC   G  D+ ++   +  E   L  T+   + ++D+  R G    A  V S+M  K 
Sbjct: 358 ISACAQLG-SDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQK- 415

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTM 469
               W S++ G  ++G  + A    E + E  ++P N  T+V +
Sbjct: 416 GVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQP-NEITFVAL 458



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 40/230 (17%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  E+L++  ++      P+      +I  C Q  + E  +++ ++ ++       ++ +
Sbjct: 331 RPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGS 390

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMY +CG++  A+++F  M+++ V ++N+MI G    G  E A +L+++M       
Sbjct: 391 ALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMA------ 444

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                                      EN V  N+ T  ++L+A +    +  G      
Sbjct: 445 ---------------------------ENGVQPNEITFVALLAACTHAGLVDQGMAFFEE 477

Query: 185 IMRTGFDSDEVVWSA-LSDMYGKCGSINEARQ-IFDKMVDRDVVSWTAMI 232
           + R    S +V   A + D+  K G + EA + I D  V+ + V WT ++
Sbjct: 478 MKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLL 527


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/491 (34%), Positives = 276/491 (56%), Gaps = 40/491 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   +  +L + C +  A + GK++H     SG     F+   L  MY +CG + DA+ +
Sbjct: 114 PDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKV 173

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQP 139
           FD M E+DV + + ++ G+ + G LE+   +  EM +     +  SW  ++SG+ R    
Sbjct: 174 FDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYH 233

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            EA+ +++ M +      ++ T+SSVL +V   + L +G++IHGY+++ G   D+ V SA
Sbjct: 234 KEAVIMFQKMHHL-GFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISA 292

Query: 200 LSDMYGKCGSINEARQIFDK--------------------MVDR---------------D 224
           + DMYGK G +    ++FD+                    +VD+               +
Sbjct: 293 MLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELN 352

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           VVSWT++I    Q G+  E   LF E+  +G++PN  T   +L AC + AA   G+  HG
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHG 412

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           +  R+         SAL+ MY+KCG ++ S+ VFN MP  +LV W SL+ GY+ +G   +
Sbjct: 413 FAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKE 472

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
            +  FE L+++  +PD I F  +L+AC   GL D+G +YF+ + E++G+    +HY+C+V
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMV 532

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           +LL R+G+  EA D+I ++P +PD  +W +LL  CR+  N+DLA+ AA+ LF +EPENP 
Sbjct: 533 NLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPG 592

Query: 465 TYVTMANIYAS 475
           TYV M+NIYA+
Sbjct: 593 TYVLMSNIYAA 603



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 104/467 (22%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG 106
           + H+ +  SG +   +IS  L+  Y+     +DA  +   + +  V S++++I   TK  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
              Q+  +F  M     FS   +   +V                     + N F + + L
Sbjct: 96  LFSQSIGVFSRM-----FSHGLIPDTHV---------------------LPNLFKVCAEL 129

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
           SA  A      GK+IH     +G D D  V  +L  MY +CG + +AR++FD+M ++DVV
Sbjct: 130 SAFKA------GKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVV 183

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA----------------- 269
           + +A++  Y ++G  EE   + SE+ KSGI PN  ++ G+L+                  
Sbjct: 184 TCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKM 243

Query: 270 -----CADHAAE-------------ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
                C D                  +G+Q+HGY+ + G        SA++ MY K G+V
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHV 303

Query: 312 ENSKKVFN---------------GMPRPDL--------------------VSWTSLIAGY 336
               K+F+               G+ R  L                    VSWTS+IAG 
Sbjct: 304 YGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGC 363

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQNG   +ALE F  +  +G +P+ +    +L AC +   +  G +  H    +  L   
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDD 422

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               + ++D+ A+ GR   ++ V + MP K +   W SL+ G  +HG
Sbjct: 423 VHVGSALIDMYAKCGRIKMSQIVFNMMPTK-NLVCWNSLMNGYSMHG 468


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 270/471 (57%), Gaps = 4/471 (0%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLI-QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
            + L EA+  LH+     PS    L+ + C  + A  +G + H H    G    VF+   
Sbjct: 59  HQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTA 118

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D YAK GN+  A   F+EM  +D    N +I G+++ G +E+AR LFD MP++ + SW
Sbjct: 119 LVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASW 178

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            +MI+ Y    +  EAL L+  M   E +  N  T+++V S  +    L  G+    ++ 
Sbjct: 179 NSMIACYAHGGEFQEALTLFDQMLR-EGASPNAITITTVFSICAKTGDLETGRRAKAWVS 237

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
                 + +V +AL +MY KC +I+EAR+ FD+M  RDVV+W+ MI  Y   GR  E   
Sbjct: 238 EEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLE 296

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF  +  +  +PN  T  GVL+ACA   ++ELG+Q+  Y+        S+  SAL+ MY+
Sbjct: 297 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYT 356

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG+V  ++ VF+ M +  +++W S+I G A NG  + A+  +  ++  G QP+ I F+ 
Sbjct: 357 KCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLA 416

Query: 367 VLTACTHAGLVDKGLQYFHSIKE-KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           +LTACTHAGLVDKG+ +F  +K+ K   +   +H ACIVDLL +SGR  EA   I  M +
Sbjct: 417 LLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEV 476

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +P+  +W +LL  CR H +++LAK AA  L  +EP + + YV ++NIYA A
Sbjct: 477 EPNAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADA 527


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 268/485 (55%), Gaps = 72/485 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S++  C     + +G +VHS +  S F   V+I + L+DMY+KCGN++DA        
Sbjct: 155 FASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDA-------- 206

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  + +FDEM  R+  SW ++I+ + +    +EALD+++M
Sbjct: 207 -----------------------QRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQM 243

Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGK 206
           M   E+ V  ++ TL+SV+SA +++  +++G+E+HG +++     +D ++ +A  DMY K
Sbjct: 244 M--LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAK 301

Query: 207 CGSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRY 235
           C  I EAR IFD                               KM +R+VVSW A+I  Y
Sbjct: 302 CSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGY 361

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G  EE  +LF  L +  + P  ++FA +L ACAD A   LG Q H ++ + G+   S
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQS 421

Query: 296 ------FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                 F  ++L+ MY KCG VE    VF  M   D VSW ++I G+AQNG  ++ALE F
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +L+SG +PDHI  +GVL+AC HAG V++G  YF S+    G+    DHY C+VDLL R
Sbjct: 482 REMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGR 541

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G   EA+ +I +MPM+PD  +W SLL  C++H N+ L K  AE L E+EP N   YV +
Sbjct: 542 AGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLL 601

Query: 470 ANIYA 474
           +N+YA
Sbjct: 602 SNMYA 606



 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 242/432 (56%), Gaps = 43/432 (9%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           + VH+ +  SGF   +FI N L+D Y+KCG++ D + +FD+M +R++ ++N++++G TK 
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G L++A +LF  MP+RD  +W +M+SG+ ++++  EAL  + MM   E  V N+++ +SV
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHK-EGFVLNEYSFASV 158

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           LSA S +  +  G ++H  I ++ F SD  + SAL DMY KCG++N+A+++FD+M DR+V
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSW ++I  + Q G   E   +F  +++S + P+  T A V++ACA  +A ++G++VHG 
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278

Query: 286 MTRIGYDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMP---------------------- 322
           + +          S A V MY+KC  ++ ++ +F+ MP                      
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338

Query: 323 ---------RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
                      ++VSW +LIAGY QNG  ++AL  F LL +    P H  F  +L AC  
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398

Query: 374 AGLVDKGLQ-YFHSIKEKHGLTYTA----DHYA--CIVDLLARSGRFHEAEDVISKMPMK 426
              +  G+Q + H +  KHG  + +    D +    ++D+  + G   E   V  KM M+
Sbjct: 399 LAELHLGMQAHVHVL--KHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-ME 455

Query: 427 PDKFLWASLLGG 438
            D   W +++ G
Sbjct: 456 RDCVSWNAMIIG 467



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 119/249 (47%), Gaps = 44/249 (17%)

Query: 263 FAGVLNACADHAAEEL-GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           FA +L++C       +  + VH  + + G+    F  + L+  YSKCG++E+ ++VF+ M
Sbjct: 22  FAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKM 81

Query: 322 PR-------------------------------PDLVSWTSLIAGYAQNGMPDKALEYFE 350
           P+                                D  +W S+++G+AQ+   ++AL YF 
Sbjct: 82  PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLA 408
           ++ K G   +   F  VL+AC+    ++KG+Q  HS+  K    + +D Y  + +VD+ +
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQ-VHSLIAKS--PFLSDVYIGSALVDMYS 198

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATY 466
           + G  ++A+ V  +M  + +   W SL+     +G    A    + + E  +EP+     
Sbjct: 199 KCGNVNDAQRVFDEMGDR-NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE---- 253

Query: 467 VTMANIYAS 475
           VT+A++ ++
Sbjct: 254 VTLASVISA 262



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 40/218 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK------PGVFISNCLLDMYAKCGNI 77
           P+   ++++++ C     L  G + H H+   GFK        +F+ N L+DMY KCG +
Sbjct: 384 PTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV 443

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
            +   +F +M ERD  S+N MI GF + G   +A  LF EM +          SG     
Sbjct: 444 EEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLE----------SG----E 489

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVV 196
           +P                  +  T+  VLSA      +  G+     + R  G       
Sbjct: 490 KP------------------DHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDH 531

Query: 197 WSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           ++ + D+ G+ G + EA+ + ++M +  D V W +++ 
Sbjct: 532 YTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLA 569


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 273/473 (57%), Gaps = 10/473 (2%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNCL 67
           EAL +  ++      P+    +S +  C     L  G+++H + +K       + + N L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDN 123
           +D YAKC ++  A+  F  +++ D+ S+N M++G+   GS E+A  L  EM     + D 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W  +++G+ +Y     AL+ ++ M +      N  T+S  L+A   ++ L+LGKEIHG
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMD-PNTTTISGALAACGQVRNLKLGKEIHG 523

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R   +    V SAL  MY  C S+  A  +F ++  RDVV W ++I    Q GR   
Sbjct: 524 YVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVN 583

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              L  E+  S +  N  T    L AC+  AA   GK++H ++ R G D  +F  ++L+ 
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLID 643

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY +CG+++ S+++F+ MP+ DLVSW  +I+ Y  +G    A+  F+     G +P+HI 
Sbjct: 644 MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHIT 703

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F  +L+AC+H+GL+++G +YF  +K ++ +    + YAC+VDLL+R+G+F+E  + I KM
Sbjct: 704 FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM 763

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P +P+  +W SLLG CRIH N DLA+ AA  LFE+EP++   YV MANIY++A
Sbjct: 764 PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAA 816



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 231/522 (44%), Gaps = 83/522 (15%)

Query: 2   IDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +++ C     +E +++ + + +    P   ++  + + C + +    GK V+ ++ S GF
Sbjct: 162 MEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGF 221

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +    +   +LDM+ KCG +  A+  F+E++ +DV  +N M+SG+T  G  ++A     +
Sbjct: 222 EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISD 281

Query: 118 MP----QRDNFSWTAMISGYVRYNQ----------------------------------- 138
           M     + D  +W A+ISGY +  Q                                   
Sbjct: 282 MKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNG 341

Query: 139 -PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVV 196
              EAL ++R M   E    N  T++S +SA + +  LR G+EIHGY ++    DSD +V
Sbjct: 342 YDFEALSVFRKMV-LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 400

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L D Y KC S+  AR+ F  +   D+VSW AM+  Y   G  EE   L SE+   GI
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGI 460

Query: 257 R-----------------------------------PNAFTFAGVLNACADHAAEELGKQ 281
                                               PN  T +G L AC      +LGK+
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +HGY+ R   +  +   SAL+ MYS C ++E +  VF+ +   D+V W S+I+  AQ+G 
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              AL+    +  S  + + +  V  L AC+    + +G +  H    + GL        
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-IHQFIIRCGLDTCNFILN 639

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            ++D+  R G   ++  +   MP + D   W  ++    +HG
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNVMISVYGMHG 680



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 209/469 (44%), Gaps = 93/469 (19%)

Query: 11  LKEALQILHQISHPSP----SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L  A  +L  +   +P     IY+S++Q CR+   L  G +VH+ L  +G     F+ + 
Sbjct: 70  LNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSR 129

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LL++Y + G + DA+ +FD+M ER+V                               FSW
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNV-------------------------------FSW 158

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TA++  Y       E + L+ +M N E    + F    V  A S ++  R+GK+++ Y++
Sbjct: 159 TAIMEMYCGLGDYEETIKLFYLMVN-EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYML 217

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             GF+ +  V  ++ DM+ KCG ++ AR+ F+++  +DV  W  M+  Y  +G  ++   
Sbjct: 218 SIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALK 277

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
             S++  SG++P+  T+                                   +A++  Y+
Sbjct: 278 CISDMKLSGVKPDQVTW-----------------------------------NAIISGYA 302

Query: 307 KCGNVENSKKVFNGMP-----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + G  E + K F  M      +P++VSWT+LIAG  QNG   +AL  F  ++  G +P+ 
Sbjct: 303 QSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNS 362

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY-------ACIVDLLARSGRFH 414
           I     ++ACT+  L+  G       +E HG     +           +VD  A+  R  
Sbjct: 363 ITIASAVSACTNLSLLRHG-------REIHGYCIKVEELDSDLLVGNSLVDYYAKC-RSV 414

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA-KRAAEALFE-IEPE 461
           E       M  + D   W ++L G  + G+ + A +  +E  F+ IEP+
Sbjct: 415 EVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPD 463



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 32/367 (8%)

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R + +    I+GF+ GGS+ +   L +           AM+   +    P E +++Y   
Sbjct: 46  RKLTNARQRITGFSGGGSVHRNGVLNN----------AAMLLSSMDLTNPDECIEIY--- 92

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                        +S+L     +  LRLG ++H  ++  G D  E + S L ++Y + G 
Sbjct: 93  -------------ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 139

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + +AR++FDKM +R+V SWTA++  Y   G  EE   LF  ++  G+RP+ F F  V  A
Sbjct: 140 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 199

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C++     +GK V+ YM  IG++  S    +++ M+ KCG ++ +++ F  +   D+  W
Sbjct: 200 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 259

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
             +++GY   G   KAL+    +  SG +PD + +  +++    +G  ++  +YF  +  
Sbjct: 260 NIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGG 319

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM---KPDKFLWASLLGGCRIHGNLD 446
                     +  ++    ++G   EA  V  KM +   KP+    AS +  C    NL 
Sbjct: 320 LKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACT---NLS 376

Query: 447 LAKRAAE 453
           L +   E
Sbjct: 377 LLRHGRE 383


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/433 (38%), Positives = 259/433 (59%), Gaps = 2/433 (0%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           +G++VH H    G    VF+   L+D YAK G++  A + FDEM  +D    N +I+G++
Sbjct: 88  QGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYS 147

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           K G +++AR LFD M +R + SW +MI+ Y    +  EAL L+  M + E +  N  T++
Sbjct: 148 KAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLS-EGARPNAITIT 206

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SV S  +    L  GK +   I       + +V +AL +MY KC +I++AR+ FD+M  R
Sbjct: 207 SVFSICAKSGDLDTGKRVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARREFDRMSQR 265

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVV+W+ MI  Y Q GR  E   LF  +  +  RPN  T  GV++ACA   ++EL +Q+ 
Sbjct: 266 DVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIG 325

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y         S+  SAL+ MY++CG+V  ++ VF+ M +  +++W S+I G A NG  +
Sbjct: 326 NYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAE 385

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
            A+  +E + ++G QP+ I FV +L ACTHAGLVD+G+ +F  +K +H ++   +H ACI
Sbjct: 386 DAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACI 445

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLL +SG   EA   I  M ++P+  +W +LL  CR H +++LAK A+  L  +EP+N 
Sbjct: 446 VDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNS 505

Query: 464 ATYVTMANIYASA 476
           + YV ++NIYA A
Sbjct: 506 SIYVLLSNIYADA 518



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 103/260 (39%), Gaps = 40/260 (15%)

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           AR +FD +        +  +    +     +    FS + + G    +     V  +CA 
Sbjct: 23  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 82

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
            A+   G+QVH +    G     F  +ALV  Y+K G++E++   F+ MP  D +    L
Sbjct: 83  TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCL 142

Query: 333 IAGYAQNGMPDK-------------------------------ALEYFELLLKSGTQPDH 361
           I GY++ G  DK                               AL  F+ +L  G +P+ 
Sbjct: 143 ITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNA 202

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKE---KHGLTYTADHYACIVDLLARSGRFHEAED 418
           I    V + C  +G +D G +    I E   ++ + +TA     ++++  +     +A  
Sbjct: 203 ITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTA-----LMEMYVKCRAIDDARR 257

Query: 419 VISKMPMKPDKFLWASLLGG 438
              +M  + D   W++++ G
Sbjct: 258 EFDRMSQR-DVVAWSTMIAG 276



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 40/230 (17%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  E+L++  ++      P+      +I  C Q  + E  +++ ++ ++       ++ +
Sbjct: 282 RPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGS 341

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMY +CG++  A+++F  M+++ V ++N+MI G    G  E A +L+++M       
Sbjct: 342 ALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMA------ 395

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                                      EN V  N+ T  ++L+A +    +  G      
Sbjct: 396 ---------------------------ENGVQPNEITFVALLAACTHAGLVDQGMAFFEE 428

Query: 185 IMRTGFDSDEVVWSA-LSDMYGKCGSINEARQ-IFDKMVDRDVVSWTAMI 232
           + R    S +V   A + D+  K G + EA + I D  V+ + V WT ++
Sbjct: 429 MKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLL 478


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 183/483 (37%), Positives = 284/483 (58%), Gaps = 22/483 (4%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R+ E L I      P      +++  C    A   GK+VH +   SG    VF+ N ++D
Sbjct: 239 RMTEDLGI-----RPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVD 293

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFS 125
           MYAKCG + +A  +F+ M+ +DV S+N M++G+++ G  + A  LF+++ +     +  +
Sbjct: 294 MYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVT 353

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W+A+I+GY +     EALD++R M     S  N  TL S+LS  ++   L  GKE H + 
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQML-LCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHA 412

Query: 186 MRTGFDSDE-------VVWSALSDMYGKCGSINEARQIFDKMV--DRDVVSWTAMIGRYF 236
           ++   + DE       +V +AL DMY KC S   AR +FD +   DR VV+WT +IG   
Sbjct: 413 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 472

Query: 237 QEGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-P 293
           Q G   E   LFS++++    + PNAFT +  L ACA   A   G+Q+H Y+ R  ++  
Sbjct: 473 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 532

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F A+ L+ MYSK G+V+ ++ VF+ M + + VSWTSL+ GY  +G  ++AL+ F  + 
Sbjct: 533 MLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQ 592

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           K    PD + FV VL AC+H+G+VD+G+ YF+ + +  G+   A+HYAC+VDLL+R+GR 
Sbjct: 593 KVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRL 652

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            EA ++I  MPMKP   +W +LL  CR++ N++L + AA  L E+E  N  +Y  ++NIY
Sbjct: 653 DEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 712

Query: 474 ASA 476
           A+A
Sbjct: 713 ANA 715



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 233/509 (45%), Gaps = 102/509 (20%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L++ LQ+  ++      P    +  +++ C +  +   G  VH+ + +SGF+  VF+ N 
Sbjct: 126 LEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNG 185

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DN 123
           L+ MY +CG                               + E AR +FDEM +R   D 
Sbjct: 186 LVSMYGRCG-------------------------------AWENARQVFDEMRERGVGDL 214

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SW ++++ Y++    I A+ ++  M        +  +L +VL A +++     GK++HG
Sbjct: 215 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHG 274

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR--- 240
           Y +R+G   D  V +A+ DMY KCG + EA ++F++M  +DVVSW AM+  Y Q GR   
Sbjct: 275 YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDD 334

Query: 241 --------REE--------------GFA----------LFSELIKSGIRPNAFTFAGVLN 268
                   REE              G+A          +F +++  G  PN  T   +L+
Sbjct: 335 ALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLS 394

Query: 269 ACADHAAEELGKQVHGYMTRIGY-----DPYS--FAASALVHMYSKCGNVENSKKVFNGM 321
            CA       GK+ H +  +        DP       +AL+ MYSKC + + ++ +F+ +
Sbjct: 395 GCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLI 454

Query: 322 PRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT------ACTH 373
           P  D  +V+WT LI G AQ+G  ++ALE F  +L    QPD+ V     T      AC  
Sbjct: 455 PPKDRSVVTWTVLIGGNAQHGEANEALELFSQML----QPDNFVMPNAFTISCALMACAR 510

Query: 374 AGLVDKGLQ---YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
            G +  G Q   Y    + +  + + A+   C++D+ ++SG    A  V   M  + +  
Sbjct: 511 LGALRFGRQIHAYVLRNRFESAMLFVAN---CLIDMYSKSGDVDAARVVFDNMHQR-NGV 566

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIE 459
            W SL+ G  +HG     + A +  +E++
Sbjct: 567 SWTSLMTGYGMHGR---GEEALQIFYEMQ 592



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 178/386 (46%), Gaps = 51/386 (13%)

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           F W  +I   V      + L LYR MQ       + +T   VL A   I   R G  +H 
Sbjct: 111 FWWNQLIRRSVHLGFLEDVLQLYRRMQRL-GWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGR 240
            +  +GF+ +  V + L  MYG+CG+   ARQ+FD+M +R   D+VSW +++  Y Q G 
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 241 REEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
                 +F  + +  GIRP+A +   VL ACA   A   GKQVHGY  R G     F  +
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 289

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVS------------------------------- 328
           A+V MY+KCG +E + KVF  M   D+VS                               
Sbjct: 290 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 349

Query: 329 ----WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-Y 383
               W+++IAGYAQ G+  +AL+ F  +L  G++P+ +  V +L+ C  AG +  G + +
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

Query: 384 FHSIKEKHGLTYT--ADHYACI---VDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLG 437
            H+IK    L      D    I   +D+ ++      A  +   +P K    + W  L+G
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469

Query: 438 GCRIHGNLDLAKRAAEALFE-IEPEN 462
           G   HG    A  A E   + ++P+N
Sbjct: 470 GNAQHGE---ANEALELFSQMLQPDN 492


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 172/479 (35%), Positives = 289/479 (60%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      L +A+ +  +I  P    ++++I  C  +   E+  ++   +K SG  P +
Sbjct: 300 VDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNI 359

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F  +  L   A  G     + L   +     E D+     ++  ++K   LE AR  F+ 
Sbjct: 360 FTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNL 419

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +P++D  +W A+ISGY +Y + +EAL L+  M   E    N+ TLS++L + + +Q + +
Sbjct: 420 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVVHV 478

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            +++HG  +++GF SD  V ++L D YGKC  + +A +IF++    D+VS+T+MI  Y Q
Sbjct: 479 CRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQ 538

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G+ EE   LF E+    ++P+ F  + +LNACA+ +A E GKQ+H ++ + G+    FA
Sbjct: 539 YGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFA 598

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++LV+MY+KCG+++++ + F+ +    +VSW+++I G AQ+G   +AL+ F  +LK G 
Sbjct: 599 GNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 658

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI  V VL AC HAGLV +   YF S++E  G     +HYAC++DLL R+G+ +EA 
Sbjct: 659 SPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAV 718

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++++KMP + +  +W +LLG  RIH +++L +RAAE LF +EPE   T+V +ANIYASA
Sbjct: 719 ELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASA 777



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/417 (31%), Positives = 217/417 (52%), Gaps = 38/417 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   YS L+  C   ++L  G ++H+H+  SG      I N L+++Y+KC N       
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNF------ 107

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                            G+        AR L DE  + D  SW+A+ISGY +      AL
Sbjct: 108 -----------------GY--------ARKLVDESSEPDLVSWSALISGYAQNGLGGGAL 142

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             +  M +      N+FT SSVL A S ++ LR+GK++HG ++ +GF+ D  V + L  M
Sbjct: 143 MAFHEM-HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVM 201

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC    +++++FD++ +R+VVSW A+   Y Q     E   LF E++ SGI+PN F+ 
Sbjct: 202 YAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSL 261

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + ++NAC        GK +HGY+ ++GYD   F+A+ALV MY+K G++ ++  VF  + +
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 321

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           PD+VSW ++IAG   +   ++ALE    + +SG  P+       L AC   GL + G Q 
Sbjct: 322 PDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQL 381

Query: 384 FHSIKEKHGLTYTADHYACI--VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             S+ +   +   +D +  +  VD+ ++     +A    + +P K D   W +++ G
Sbjct: 382 HSSLMK---MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK-DLIAWNAIISG 434



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 219/451 (48%), Gaps = 79/451 (17%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS+++ C   + L  GK+VH  +  SGF+  VF++N L+ MYAKC    D+        
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS-------- 211

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  + LFDE+P+R+  SW A+ S YV+ +   EA+ L+  
Sbjct: 212 -----------------------KRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYE 248

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M        N+F+LSS+++A + ++    GK IHGY+++ G+D D    +AL DMY K G
Sbjct: 249 MV-LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG 307

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +A  +F+K+   D+VSW A+I         E+   L  ++ +SGI PN FT +  L 
Sbjct: 308 DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALK 367

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA    +ELG+Q+H  + ++  +   F +  LV MYSKC  +E+++  FN +P  DL++
Sbjct: 368 ACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 427

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W ++I+GY+Q     +AL  F  + K G   +      +L +         GLQ  H  +
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQVVHVCR 480

Query: 389 EKHGLT----YTADHYAC--IVDLLARSGRFHEAE---------DVIS------------ 421
           + HGL+    + +D Y    ++D   +     +AE         D++S            
Sbjct: 481 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYG 540

Query: 422 -------------KMPMKPDKFLWASLLGGC 439
                         M +KPD+F+ +SLL  C
Sbjct: 541 QGEEALKLFLEMQDMELKPDRFVCSSLLNAC 571



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 4/290 (1%)

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           N      + S +LS     + LR G +IH +I ++G   D  + + L ++Y KC +   A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYA 110

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           R++ D+  + D+VSW+A+I  Y Q G        F E+   G++ N FTF+ VL AC+  
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               +GKQVHG +   G++   F A+ LV MY+KC    +SK++F+ +P  ++VSW +L 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHG 392
           + Y Q     +A+  F  ++ SG +P+      ++ ACT  GL D    +  H    K G
Sbjct: 231 SCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLG 288

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             +       +VD+ A+ G   +A  V  K+  +PD   W +++ GC +H
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 70/127 (55%)

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           A+ + + K    P + +++ +L+ C    +   G Q+H ++T+ G        + L+++Y
Sbjct: 42  AILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY 101

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           SKC N   ++K+ +    PDLVSW++LI+GYAQNG+   AL  F  +   G + +   F 
Sbjct: 102 SKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFS 161

Query: 366 GVLTACT 372
            VL AC+
Sbjct: 162 SVLKACS 168


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 275/493 (55%), Gaps = 44/493 (8%)

Query: 26  PSIYSSLIQFCRQN--------RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
           P   SS++  C Q         RA   G+ +H+ +   GF     + N L+DMY KC  +
Sbjct: 241 PVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQM 300

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA-------------------------- 111
            +A  +FD +      S+N +I+GF + GS  +A                          
Sbjct: 301 DEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASC 360

Query: 112 ---------RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
                    R +FD++ +    +W  ++SGY +     + ++L+R MQ+ +N   ++ TL
Sbjct: 361 IKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQH-QNVQPDRTTL 419

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
           + +LS+ S +  L LG ++H   +R    +D  V S L DMY KCG I  AR IF++M +
Sbjct: 420 AVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTE 479

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           RDVV W +MI         EE F  F ++  +G+ P   ++A ++N+CA  ++   G+Q+
Sbjct: 480 RDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQI 539

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H  + + GYD   +  SAL+ MY+KCGN+++++  F+ M   ++V+W  +I GYAQNG  
Sbjct: 540 HAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFG 599

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           +KA++ FE +L +  +PD + F+ VLT C+H+GLVD+ + +F+S++  +G+T  A+HY C
Sbjct: 600 EKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTC 659

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           ++D L R+GR  E E +I  MP K D  +W  LL  C +H N +L + AA+ LF ++P+N
Sbjct: 660 LIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKN 719

Query: 463 PATYVTMANIYAS 475
           P+ YV ++NIYAS
Sbjct: 720 PSPYVLLSNIYAS 732



 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 205/412 (49%), Gaps = 17/412 (4%)

Query: 54  SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           ++G     F+ N L+++Y+  G   DA   F  +   +  SYN  +S   + G L+ AR 
Sbjct: 36  AAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARA 95

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           L DEMP R+  SW  +I+   R  +  EAL+LY  M   E  V   FTL+SVLSA  A+ 
Sbjct: 96  LLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLR-EGLVPTHFTLASVLSACGAVA 154

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            L  G+  HG  ++ G D +  V +AL  MY KCG + +A ++FD M   + VS+TAM+G
Sbjct: 155 ALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMG 214

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE--------LGKQVHGY 285
              Q G  ++   LF+ + +SG+R +    + VL +CA   A E        LG+ +H  
Sbjct: 215 GLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHAL 274

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + R G+       ++L+ MY+KC  ++ + KVF+ +P    VSW  LI G+ Q G   KA
Sbjct: 275 IVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKA 334

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           LE   L+ +SG++P+ + +  +L +C  A  V      F  I      T+       ++ 
Sbjct: 335 LEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNT-----LLS 389

Query: 406 LLARSGRFHEAEDVISKMP---MKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              +     +  ++  +M    ++PD+   A +L  C   G LDL  +   A
Sbjct: 390 GYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSA 441



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 201/445 (45%), Gaps = 65/445 (14%)

Query: 2   IDILCNQRRLKEALQI----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  L    R  EAL++    L +   P+    +S++  C    AL++G++ H      G 
Sbjct: 112 IAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGL 171

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
              +F+ N LL MY KCG + DA  LFD M   +  S+  M+ G  + GS++ A  LF  
Sbjct: 172 DENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFAR 231

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M                R    ++ + +  ++ +   + +++F +         ++  RL
Sbjct: 232 M---------------CRSGVRVDPVAVSSVLGSCAQACASEFDV---------VRAFRL 267

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+ IH  I+R GF SD+ V ++L DMY KC  ++EA ++FD + +   VSW  +I  + Q
Sbjct: 268 GQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQ 327

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   +   + + + +SG  PN  T++ +L +C                           
Sbjct: 328 AGSYAKALEVLNLMEESGSEPNEVTYSNMLASCI-------------------------- 361

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
                    K  +V +++ +F+ + RP + +W +L++GY Q  +    +E F  +     
Sbjct: 362 ---------KARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNV 412

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           QPD      +L++C+  G++D G Q  HS   +  L       + +VD+ ++ G+   A 
Sbjct: 413 QPDRTTLAVILSSCSRLGILDLGTQ-VHSASVRFLLHNDMFVASGLVDMYSKCGQIGIAR 471

Query: 418 DVISKMPMKPDKFLWASLLGGCRIH 442
            + ++M  + D   W S++ G  IH
Sbjct: 472 IIFNRMTER-DVVCWNSMISGLAIH 495



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 137/278 (49%), Gaps = 12/278 (4%)

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G ++ AR + D+M DR+VVSW  +I    +  R  E   L+  +++ G+ P  FT A 
Sbjct: 86  RAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLAS 145

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL+AC   AA + G++ HG   ++G D   F  +AL+ MY+KCG VE++ ++F+GM  P+
Sbjct: 146 VLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPN 205

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL---- 381
            VS+T+++ G  Q G  D AL  F  + +SG + D +    VL +C  A   +  +    
Sbjct: 206 EVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAF 265

Query: 382 ---QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              Q  H++  + G          ++D+  +  +  EA  V   +P       W  L+ G
Sbjct: 266 RLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLP-NISTVSWNILITG 324

Query: 439 CRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYAS 475
               G      +A E L  +E   +    VT +N+ AS
Sbjct: 325 ---FGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLAS 359



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 80/132 (60%), Gaps = 4/132 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ S Y+S+I  C +  ++ +G+++H+ +   G+   V++ + L+DMYAKCGN+ DA+  
Sbjct: 515 PTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVF 574

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM---PQR-DNFSWTAMISGYVRYNQP 139
           FD M  +++ ++N MI G+ + G  E+A +LF+ M    QR D  ++ A+++G       
Sbjct: 575 FDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLV 634

Query: 140 IEALDLYRMMQN 151
            EA+  +  M++
Sbjct: 635 DEAIAFFNSMES 646


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 174/451 (38%), Positives = 268/451 (59%), Gaps = 35/451 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           I  +L++ C     L EGK +H+ L +S F+  + + N LL++YAKC             
Sbjct: 17  ICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKC------------- 63

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                             G L  AR LFDEM  RD  +WTA+I+GY ++++P +AL L  
Sbjct: 64  ------------------GDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLP 105

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRL--GKEIHGYIMRTGFDSDEVVWSALSDMYG 205
            M        N+FTL+S+L A S +    +  G+++HG  +R G+DS+  V  A+ DMY 
Sbjct: 106 EMLRI-GLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYA 164

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           +C  + EA+ IFD MV ++ VSW A+I  Y ++G+ ++ F LFS +++  ++P  FT++ 
Sbjct: 165 RCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSS 224

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL ACA   + E GK VH  M + G    +F  + L+ MY+K G++E++KKVF+ + + D
Sbjct: 225 VLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRD 284

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW S++ GY+Q+G+   AL+ FE +L++   P+ I F+ VLTAC+HAGL+D+G  YF 
Sbjct: 285 VVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFD 344

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +K K+ +     HY  +VDLL R+G    A   IS+MP+KP   +W +LLG CR+H N+
Sbjct: 345 MMK-KYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNM 403

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +L   AAE +FE++   P T+V + NIYA A
Sbjct: 404 ELGGYAAECIFELDSHYPGTHVLLYNIYALA 434



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 167/296 (56%), Gaps = 4/296 (1%)

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           Q  +N+   +    ++L   + +  L  GK IH  ++ + F  D V+ + L ++Y KCG 
Sbjct: 6   QQCKNNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGD 65

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +  AR++FD+M  RDVV+WTA+I  Y Q  R ++   L  E+++ G++PN FT A +L A
Sbjct: 66  LVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKA 125

Query: 270 CADHAAEEL--GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            +   + ++  G+Q+HG   R GYD   + + A++ MY++C ++E ++ +F+ M   + V
Sbjct: 126 ASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEV 185

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW +LIAGYA+ G  DKA   F  +L+   +P H  +  VL AC   G +++G ++ H++
Sbjct: 186 SWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG-KWVHAL 244

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             K G    A     ++D+ A+SG   +A+ V  ++  K D   W S+L G   HG
Sbjct: 245 MIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHG 299



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 33/218 (15%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +L +   P+   YSS++  C    +LE+GK VH+ +   G K   F+ N LLDMYAK G+
Sbjct: 210 MLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGS 269

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           I DA+ +FD + +RDV S+N+M++G+++ G  + A   F+EM +                
Sbjct: 270 IEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR---------------- 313

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
                                N  T   VL+A S    L  G+     + +   +     
Sbjct: 314 ----------------TRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISH 357

Query: 197 WSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           +  + D+ G+ G ++ A Q   +M +      W A++G
Sbjct: 358 YVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLG 395


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 168/416 (40%), Positives = 251/416 (60%), Gaps = 17/416 (4%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+  Y +   I +AQ +F++M +RDV S+NTM+SG+ + G + +AR LFD  P RD F
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVF 325

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA++SGY +     EA  ++  M +      N  + +++++A    + +   KE+   
Sbjct: 326 TWTAIVSGYAQNGMLEEAKRVFDAMPD-----KNAVSWNAMMAAYVQRRMMEEAKEL--- 377

Query: 185 IMRTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                FD+    +   W+ +   Y + G ++EAR IF  M  +D VSW AM+  Y Q G 
Sbjct: 378 -----FDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGF 432

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF E+ + G   N   FA VL+ CAD AA E G Q+H  + + GY    F  +A
Sbjct: 433 SEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNA 492

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY KCG++E +   F  M   D+VSW ++IAGYA++G   +ALE F+ + K+ T+PD
Sbjct: 493 LLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPD 552

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I  VGVL AC+H+GLV+KG+ YF+S+    G+    +HY C++DLL R+GR  EA +++
Sbjct: 553 DITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLM 612

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             MP +PD  +W +LLG  RIH N +L + AAE +FE+EPEN   YV ++NIYAS+
Sbjct: 613 KDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASS 668



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 174/379 (45%), Gaps = 53/379 (13%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA--------- 111
           V   N  +  + + G + DA+ LF  M  R   +YNTM++G+   G L QA         
Sbjct: 107 VIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR 166

Query: 112 ----------------------RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                                 R LFDEMP +D+ S+  MIS +  +        L  + 
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHG-------LVSLA 219

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +++ +    K  +S      + ++  R+ +    +  RT +D+  + W+AL   Y +   
Sbjct: 220 RHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDA--ISWNALMAGYVQRSQ 277

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I EA+++F+KM  RDVVSW  M+  Y + G   E   LF     + IR + FT+  +++ 
Sbjct: 278 IEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFD---VAPIR-DVFTWTAIVSG 333

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
            A +   E  K+V   M     D  + + +A++  Y +   +E +K++F+ MP  ++ SW
Sbjct: 334 YAQNGMLEEAKRVFDAMP----DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW 389

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            +++ GYAQ GM D+A   F ++     Q D + +  +L A +  G  ++ LQ F  +  
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMM----PQKDAVSWAAMLAAYSQIGFSEETLQLFKEMG- 444

Query: 390 KHGLTYTADHYACIVDLLA 408
           + G       +AC++   A
Sbjct: 445 RCGEWVNRSAFACVLSTCA 463



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 38/228 (16%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +E LQ+  ++       + S ++ ++  C    ALE G ++HS L  +G+  G F+ N L
Sbjct: 434 EETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNAL 493

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L MY KCG++ +A + F+EM+ERDV S+NTMI+G+ + G  ++A  +FD M +       
Sbjct: 494 LAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRK------- 546

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                     ++  +  TL  VL+A S    +  G      + R
Sbjct: 547 -------------------------TSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHR 581

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
             G  +    ++ + D+ G+ G ++EA  +   M  + D   W A++G
Sbjct: 582 DFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLG 629



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 48/204 (23%)

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           HM  + G V +++++F  MPR    ++ +++AGYA NG   +AL +F    +S  +PD  
Sbjct: 117 HM--RAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF----RSIPRPDSF 170

Query: 363 VFVGVLTA-----------------------------CTHA--GLVDKGLQYFHSIKEKH 391
            +  +L A                              +HA  GLV     YF    EK 
Sbjct: 171 SYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKD 230

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            +++       ++    R+GR  EA ++      + D   W +L+ G      ++ A++ 
Sbjct: 231 AVSWNG-----MLAAYVRNGRIQEARELFDSR-TEWDAISWNALMAGYVQRSQIEEAQK- 283

Query: 452 AEALFEIEPE-NPATYVTMANIYA 474
              +F   P+ +  ++ TM + YA
Sbjct: 284 ---MFNKMPQRDVVSWNTMVSGYA 304


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 167/453 (36%), Positives = 262/453 (57%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL+        L+ G+KVH  +  +G +    +   L+ MYAKCG+IS AQ +
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVI 254

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                          FD++P+++  +WT +I+GY +  Q   AL
Sbjct: 255 -------------------------------FDKLPEKNVVTWTLLIAGYAQQGQVDVAL 283

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L   MQ  E +  NK T +S+L   +    L  GK++H YI+++G+  +  V +AL  M
Sbjct: 284 ELLEKMQQAEVA-PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITM 342

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + EAR++F  +  RDVV+WTAM+  Y Q G  +E   LF  + + GI+P+  TF
Sbjct: 343 YCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTF 402

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L +C+  A  + GK +H  +   GY    +  SALV MY+KCG++++++ VFN M  
Sbjct: 403 TSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSE 462

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++V+WT++I G AQ+G   +ALEYFE + K G +PD + F  VL+ACTH GLV++G ++
Sbjct: 463 RNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKH 522

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+   +G+    +HY+C VDLL R+G   EAE+VI  MP +P   +W +LL  CRIH 
Sbjct: 523 FRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHS 582

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +++  +RAAE + +++P++   YV ++NIYA+A
Sbjct: 583 DVERGERAAENVLKLDPDDDGAYVALSNIYAAA 615



 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 246/460 (53%), Gaps = 48/460 (10%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSS----LIQFCRQNRALEEGKKVHSHLKSSGF 57
           + ILC Q RLKEAL IL+ +      +YS     L+Q C + R+LE+G++VH+ +  SG 
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +P  ++ N LL MYAKC                               GSL  AR +FD 
Sbjct: 128 QPNRYLENTLLSMYAKC-------------------------------GSLTDARRVFDG 156

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R+  SWTAMI  +V  NQ +EA   Y  M+       +K T  S+L+A +  + L++
Sbjct: 157 IRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMK-LAGCKPDKVTFVSLLNAFTNPELLQV 215

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+++H  I + G + +  V ++L  MY KCG I++A+ IFDK+ +++VV+WT +I  Y Q
Sbjct: 216 GQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQ 275

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G+ +    L  ++ ++ + PN  T+  +L  C    A E GK+VH Y+ + GY    + 
Sbjct: 276 QGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV 335

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +AL+ MY KCG ++ ++K+F  +P  D+V+WT+++ GYAQ G  D+A++ F  + + G 
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI 395

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHE 415
           +PD + F   LT+C+    + +G      +       Y+ D Y  + +V + A+ G   +
Sbjct: 396 KPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA---GYSLDVYLQSALVSMYAKCGSMDD 452

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           A  V ++M  + +   W +++ GC  HG      R  EAL
Sbjct: 453 ARLVFNQMSER-NVVAWTAMITGCAQHG------RCREAL 485



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 3/234 (1%)

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           ++GR +E   + + +I  G R  +  F G+L  CA   + E G++VH  + + G  P  +
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             + L+ MY+KCG++ ++++VF+G+   ++VSWT++I  +       +A + +E +  +G
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD + FV +L A T+  L+  G Q  H    K GL         +V + A+ G   +A
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVG-QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKA 251

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE-PENPATYVTM 469
           + +  K+P K +   W  L+ G    G +D+A    E + + E   N  TY ++
Sbjct: 252 QVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSI 304



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 138/298 (46%), Gaps = 55/298 (18%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AID+    RR+++      Q   P    ++S +  C     L+EGK +H  L  +G+   
Sbjct: 383 AIDLF---RRMQQ------QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLD 433

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V++ + L+ MYAKCG++ DA+ +F++M ER+V ++  MI+G  + G   +A   F++M +
Sbjct: 434 VYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493

Query: 121 R----DNFSWTAMISG-----------------YVRYN-QPIEA-----LDLYRMMQNFE 153
           +    D  ++T+++S                  Y+ Y  +P+       +DL     + E
Sbjct: 494 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 553

Query: 154 NSVSNKFTL---------SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
            + +   T+          ++LSA      +  G+     +++   D D+  + ALS++Y
Sbjct: 554 EAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPD-DDGAYVALSNIY 612

Query: 205 GKCGSINEARQIFDKMVDRDVV-----SWTAMIGR----YFQEGRREEGFALFSELIK 253
              G   +A ++   M  RDVV     SW  + G+    + ++    E   +++EL K
Sbjct: 613 AAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGK 670


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 171/477 (35%), Positives = 276/477 (57%), Gaps = 2/477 (0%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AI  LC++  L+EA Q        + S+++  IQ C   ++L  GK++H  L  SGF   
Sbjct: 19  AIATLCSKGNLREAFQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSD 78

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            FI N L+ MY+K G+   A  ++  M++++  S N +I+G+ + G L  AR +FDEMP 
Sbjct: 79  KFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPD 138

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R   +W AMI+G +++    E L L+R M     S  +++TL SV S  + ++ + +G++
Sbjct: 139 RKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQ 197

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHGY ++ G + D VV S+L+ MY + G + +   +   M  R++V+W  +I    Q G 
Sbjct: 198 IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 257

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E    L+  +  SG RPN  TF  VL++C+D A    G+Q+H    +IG        S+
Sbjct: 258 PETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSS 317

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSGTQP 359
           L+ MYSKCG + ++ K F+     D V W+S+I+ Y  +G  D+A+E F  +  ++  + 
Sbjct: 318 LISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEI 377

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           + + F+ +L AC+H+GL DKGL+ F  + EK+G      HY C+VDLL R+G   +AE +
Sbjct: 378 NEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAI 437

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           I  MP+K D  +W +LL  C IH N ++A+R  + + +I+P + A YV +AN++ASA
Sbjct: 438 IRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASA 494


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 162/406 (39%), Positives = 252/406 (62%), Gaps = 1/406 (0%)

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY KCG  SDA  +FD+M  RD  S+NTM+SGF + G L+  R +FDEM +R+  +WTA+
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAI 60

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           ISG  +     ++L L+  M+       N  T  S L+A S +Q L  G++IHG + + G
Sbjct: 61  ISGLSQNEMYEDSLGLFVQMRCGLIE-PNFLTYLSSLTACSGLQALEKGRQIHGLVWKLG 119

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
             S+  + SAL D+Y KCGS+ +AR++F+  V+ D VS T ++  + Q G  EE    F 
Sbjct: 120 IQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFV 179

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           +++  G   +    + VL AC    +  LGKQ+H  + +       F  + L++MYSKCG
Sbjct: 180 KMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCG 239

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            ++ S KVFNG+   + VSW S+IA +A++G   +AL  +E +++ G  P  + F+ +L 
Sbjct: 240 ELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLH 299

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H GLVDKG+++  S+ + +G++  A+HYAC+VD+L R+G  +EA+ +I ++ +KPD 
Sbjct: 300 ACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDV 359

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +W +LLG C I G+ ++ K AAE L  +EP+ PA YV +ANIY+S
Sbjct: 360 LIWQALLGACSIRGDTEIGKYAAEQLLLLEPKKPAPYVLLANIYSS 405



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 158/328 (48%), Gaps = 34/328 (10%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +Q+   +  P+   Y S +  C   +ALE+G+++H  +   G +  + I + L+D+Y+KC
Sbjct: 78  VQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKC 137

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G++ DA+ +F+   E D  S   ++ GFT+ G        F+E                 
Sbjct: 138 GSLEDARRVFESAVELDEVSMTVILVGFTQNG--------FEE----------------- 172

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                 EA++ +  M N    V     +S+VL A      L LGK+IH  +++    S+ 
Sbjct: 173 ------EAIEFFVKMVNIGTEVDPNM-VSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNP 225

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V + L +MY KCG + E+ ++F+ +  R+ VSW +MI  + + G       L+ E+I+ 
Sbjct: 226 FVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQE 285

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVEN 313
           G  P   TF  +L+AC+     + G +    MT++ G  P +   + +V M  + G +  
Sbjct: 286 GAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNE 345

Query: 314 SKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
           +K +   +  +PD++ W +L+   +  G
Sbjct: 346 AKSLIERLSIKPDVLIWQALLGACSIRG 373


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 278/478 (58%), Gaps = 46/478 (9%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AI   C  R   E          P+   +SS I+ C    ++E GK++H      G    
Sbjct: 90  AIRTFCGMRICGEV---------PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE 140

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+ + L DMY+KCG + DA            C                    +F+EMP 
Sbjct: 141 LFVGSNLEDMYSKCGAMFDA------------C-------------------KVFEEMPC 169

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +D  SWTAMI GY +  +  EAL  ++ M + E ++ ++  L S L A  A++  + G+ 
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTI-DQHVLCSTLGACGALKACKFGRS 228

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQ 237
           +H  +++ GF+SD  V +AL+DMY K G +  A  +F   +D   R+VVS+T +I  Y +
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG--IDSECRNVVSYTCLIDGYVE 286

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             + E+G ++F EL + GI PN FTF+ ++ ACA+ AA E G Q+H  + +I +D   F 
Sbjct: 287 TEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFV 346

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           +S LV MY KCG +E++ + F+ +  P  ++W SL++ + Q+G+   A+++FE ++  G 
Sbjct: 347 SSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGV 406

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P+ I F+ +LT C+HAGLV++GL YF+S+ + +G+    +HY+C++DLL R+GR  EA+
Sbjct: 407 KPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAK 466

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           + I++MP +P+ F W S LG CRIHG+ ++ K AAE L ++EP+N    V ++NIYA+
Sbjct: 467 EFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 524



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 219/448 (48%), Gaps = 52/448 (11%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +IQ   + + L  GK++H+ L  +G+ P  F++N L++MY+KCG +  A  LFD M +R+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           + S+  MISG ++     +A   F  M           I G                   
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGM----------RICG------------------- 101

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
               V  +F  SS + A +++  + +GK++H   ++ G  S+  V S L DMY KCG++ 
Sbjct: 102 ---EVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMF 158

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A ++F++M  +D VSWTAMI  Y + G  EE    F ++I   +  +       L AC 
Sbjct: 159 DACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP--DLVSW 329
              A + G+ VH  + ++G++   F  +AL  MYSK G++E++  VF G+     ++VS+
Sbjct: 219 ALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSY 277

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T LI GY +    +K L  F  L + G +P+   F  ++ AC +   +++G Q    + +
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK 337

Query: 390 KHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
              + +  D +  + +VD+  + G    A     ++   P +  W SL+    + G   L
Sbjct: 338 ---INFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSLVS---VFGQHGL 390

Query: 448 AKRAAEALFE------IEPENPATYVTM 469
            K A +  FE      ++P N  T++++
Sbjct: 391 GKDAIK-FFERMVDRGVKP-NAITFISL 416



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 159/348 (45%), Gaps = 35/348 (10%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L+ V+   +  + LR GK++H  ++  G+     + + L +MY KCG ++ A ++FD M 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMP 67

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R++VSWTAMI    Q  +  E    F  +   G  P  F F+  + ACA   + E+GKQ
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    + G     F  S L  MYSKCG + ++ KVF  MP  D VSWT++I GY++ G 
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTAC-----------THAGLVDKGLQ-------Y 383
            ++AL  F+ ++      D  V    L AC            H+ +V  G +        
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 384 FHSIKEKHGLTYTADH-------------YACIVDLLARSGRFHEAEDV---ISKMPMKP 427
              +  K G   +A +             Y C++D    + +  +   V   + +  ++P
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE-PENPATYVTMANIYA 474
           ++F ++SL+  C     L+   +    + +I   E+P     + ++Y 
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYG 355


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 171/465 (36%), Positives = 280/465 (60%), Gaps = 9/465 (1%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +Q+L    +P  +++ S+++ C   + L  G+ VH  +   G    ++  N L++MY+K 
Sbjct: 95  IQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKF 154

Query: 75  GNISDAQT---LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
            ++ +  T   +FDE +  DV S     S +   GSL   R +F+ MP+RD  SW  +IS
Sbjct: 155 WSLEEVNTYKKVFDEGKTSDVYSKKEKESYYL--GSL---RKVFEMMPKRDIVSWNTVIS 209

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           G  +     +AL + R M N  +   + FTLSSVL   +    L  GKEIHGY +R G+D
Sbjct: 210 GNAQNGMHEDALMMVREMGN-ADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYD 268

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           +D  + S+L DMY KC  ++++ ++F  +   D +SW ++I    Q G  +EG   F ++
Sbjct: 269 ADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQM 328

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           + + I+PN  +F+ ++ ACA      LGKQ+HGY+ R  +D   F ASALV MY+KCGN+
Sbjct: 329 LIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNI 388

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
             ++ +F+ M   D+VSWT++I GYA +G    A+  F+ +   G +P+++ F+ VLTAC
Sbjct: 389 RTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTAC 448

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           +HAGLVD+  +YF+S+ + + +    +HYA + DLL R GR  EA + IS M ++P   +
Sbjct: 449 SHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSV 508

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W++LL  CR+H N++LA++ ++ LF ++P+N   YV ++NIY++A
Sbjct: 509 WSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAA 553



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 142/319 (44%), Gaps = 45/319 (14%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           ++L   S+++     K++H  I+RT   S  ++ + LS +Y     ++++  IF+ +   
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILS-IYSNLNLLHDSLLIFNSLPSP 68

Query: 224 -DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
              ++W ++I  Y   G      + F +++ SG  P+   F  VL +C        G+ V
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESV 128

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENS---------------------------- 314
           HG + R+G     +  +AL++MYSK  ++E                              
Sbjct: 129 HGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGS 188

Query: 315 -KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
            +KVF  MP+ D+VSW ++I+G AQNGM + AL     +  +  +PD      VL     
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 248

Query: 374 AGLVDKGLQYFHSIKEKHGLT----YTADHY--ACIVDLLARSGRFHEAEDVISKMPMKP 427
              + KG       KE HG      Y AD +  + ++D+ A+  R  ++  V   +P + 
Sbjct: 249 YVNLLKG-------KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QH 300

Query: 428 DKFLWASLLGGCRIHGNLD 446
           D   W S++ GC  +G  D
Sbjct: 301 DGISWNSIIAGCVQNGMFD 319



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 144/371 (38%), Gaps = 90/371 (24%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK   Q+L     P+   +SS++  C     L  GK++H ++  S F   VFI++ L+DM
Sbjct: 322 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 381

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           YAKCGNI  A+ +FD+M+  D+ S+  MI G+   G    A +LF  M            
Sbjct: 382 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM------------ 429

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR-----LGKEIHGYI 185
                                 E    N     +VL+A S    +             Y 
Sbjct: 430 --------------------EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYR 469

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +  G +     ++A++D+ G+ G + EA +    M                         
Sbjct: 470 IIPGLEH----YAAVADLLGRVGRLEEAYEFISDM------------------------- 500

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV-HM 304
                     I P    ++ +L AC  H   EL ++V   +  +  DP +  A  L+ ++
Sbjct: 501 ---------HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTV--DPQNIGAYVLLSNI 549

Query: 305 YSKCGNVENSKKVF-----NGMPRPDLVSWTSL-------IAGYAQNGMPDKALEYFELL 352
           YS  G  ++++K+       GM +    SW  +       +AG   +   D+  E  ++L
Sbjct: 550 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 609

Query: 353 LKSGTQPDHIV 363
           L+   +  +++
Sbjct: 610 LEQMEREGYVL 620


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 272/448 (60%), Gaps = 33/448 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++L++ C   + L +G+ VH+H+  S F+  + + N LL+MYAKC              
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-------------- 108

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                            GSLE+AR +F++MPQRD  +WT +ISGY ++++P +AL  +  
Sbjct: 109 -----------------GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M  F  S  N+FTLSSV+ A +A +    G ++HG+ ++ GFDS+  V SAL D+Y + G
Sbjct: 152 MLRFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYG 210

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +++A+ +FD +  R+ VSW A+I  + +    E+   LF  +++ G RP+ F++A +  
Sbjct: 211 LMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFG 270

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+     E GK VH YM + G    +FA + L+ MY+K G++ +++K+F+ + + D+VS
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W SL+  YAQ+G   +A+ +FE + + G +P+ I F+ VLTAC+H+GL+D+G  Y+  +K
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            K G+   A HY  +VDLL R+G  + A   I +MP++P   +W +LL  CR+H N +L 
Sbjct: 391 -KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
             AAE +FE++P++P  +V + NIYAS 
Sbjct: 450 AYAAEHVFELDPDDPGPHVILYNIYASG 477



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 33/311 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS+I+     R    G ++H      GF   V + + LLD+Y + G + DAQ +
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD ++ R+  S+N +I+G  +    E+A  LF  M  RD F                   
Sbjct: 219 FDALESRNDVSWNALIAGHARRSGTEKALELFQGM-LRDGFR------------------ 259

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         + F+ +S+  A S+   L  GK +H Y++++G        + L DM
Sbjct: 260 -------------PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K GSI++AR+IFD++  RDVVSW +++  Y Q G  +E    F E+ + GIRPN  +F
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
             VL AC+     + G   +  M + G  P ++    +V +  + G++  + +    MP 
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPI 426

Query: 323 RPDLVSWTSLI 333
            P    W +L+
Sbjct: 427 EPTAAIWKALL 437



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 66/256 (25%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS   Y+SL   C     LE+GK VH+++  SG K   F  N LLDMYAK G+I DA+ +
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKI 319

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD + +RDV S+N++++ + + G  ++A   F+EM +             +R        
Sbjct: 320 FDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG-----------IR-------- 360

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         N+ +  SVL+A S    L  G   +  + + G   +   +  + D+
Sbjct: 361 -------------PNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDL 407

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
            G+ G +N A +  ++M                                   I P A  +
Sbjct: 408 LGRAGDLNRALRFIEEM----------------------------------PIEPTAAIW 433

Query: 264 AGVLNACADHAAEELG 279
             +LNAC  H   ELG
Sbjct: 434 KALLNACRMHKNTELG 449


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 167/448 (37%), Positives = 272/448 (60%), Gaps = 33/448 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++L++ C   + L +G+ VH+H+  S F+  + + N LL+MYAKC              
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-------------- 108

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                            GSLE+AR +F++MPQRD  +WT +ISGY ++++P +AL  +  
Sbjct: 109 -----------------GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M  F  S  N+FTLSSV+ A +A +    G ++HG+ ++ GFDS+  V SAL D+Y + G
Sbjct: 152 MLRFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYG 210

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +++A+ +FD +  R+ VSW A+I  + +    E+   LF  +++ G RP+ F++A +  
Sbjct: 211 LMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFG 270

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+     E GK VH YM + G    +FA + L+ MY+K G++ +++K+F+ + + D+VS
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W SL+  YAQ+G   +A+ +FE + + G +P+ I F+ VLTAC+H+GL+D+G  Y+  +K
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            K G+   A HY  +VDLL R+G  + A   I +MP++P   +W +LL  CR+H N +L 
Sbjct: 391 -KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
             AAE +FE++P++P  +V + NIYAS 
Sbjct: 450 AYAAEHVFELDPDDPGPHVILYNIYASG 477



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 33/311 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS+I+     R    G ++H      GF   V + + LLD+Y + G + DAQ +
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD ++ R+  S+N +I+G  +    E+A  LF  M  RD F                   
Sbjct: 219 FDALESRNDVSWNALIAGHARRSGTEKALELFQGM-LRDGFR------------------ 259

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         + F+ +S+  A S+   L  GK +H Y++++G        + L DM
Sbjct: 260 -------------PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K GSI++AR+IFD++  RDVVSW +++  Y Q G  +E    F E+ + GIRPN  +F
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
             VL AC+     + G   +  M + G  P ++    +V +  + G++  + +    MP 
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPI 426

Query: 323 RPDLVSWTSLI 333
            P    W +L+
Sbjct: 427 EPTAAIWKALL 437



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 66/256 (25%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS   Y+SL   C     LE+GK VH+++  SG K   F  N LLDMYAK G+I DA+ +
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKI 319

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD + +RDV S+N++++ + + G  ++A   F+EM +             +R        
Sbjct: 320 FDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG-----------IR-------- 360

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         N+ +  SVL+A S    L  G   +  + + G   +   +  + D+
Sbjct: 361 -------------PNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDL 407

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
            G+ G +N A +  ++M                                   I P A  +
Sbjct: 408 LGRAGDLNRALRFIEEM----------------------------------PIEPTAAIW 433

Query: 264 AGVLNACADHAAEELG 279
             +LNAC  H   ELG
Sbjct: 434 KALLNACRMHKNTELG 449


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/484 (37%), Positives = 266/484 (54%), Gaps = 70/484 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S +  C   + L  G++VH  +  S     V I   L+DMYAKC    DA+ +FD M 
Sbjct: 154 FASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMP 213

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           ER+V S+N++I+ + + G + +A  LF EM          M +G+               
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALVLFVEM----------MATGF--------------- 248

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSDMYGKC 207
                    ++ TLSSV+SA + +   R G+++H +++ R     D V+ +AL DMY KC
Sbjct: 249 -------FPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKC 301

Query: 208 GSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRYF 236
           G   EAR IFD                               +MV+++V++W  +I  Y 
Sbjct: 302 GRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYA 361

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG----YD 292
           Q G  EE   LF +L +  I P  +T+  VLNAC + A  +LG+Q H ++ + G    + 
Sbjct: 362 QNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFG 421

Query: 293 PYS--FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           P S  F  ++LV MY K G++++  KVF  M   D VSW ++I GYAQNG    AL  FE
Sbjct: 422 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFE 481

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +L S   PD +  +GVL+AC H+GLVD+G ++FH + E HG+T + DHY C+VDLL R+
Sbjct: 482 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRA 541

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   EAE++I  MP +PD  LWASLLG CR+H N++L +R A  LFE++PEN   YV ++
Sbjct: 542 GHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLS 601

Query: 471 NIYA 474
           N+YA
Sbjct: 602 NMYA 605



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 241/490 (49%), Gaps = 53/490 (10%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S L    R   +L   +  H  +  S      F+ N L+  YA+ G + +A+ +FD +  
Sbjct: 21  SPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPL 80

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R+  SYN ++S + + G  ++AR LF+ +P  D  S+ A+++   R+ +   A D  R +
Sbjct: 81  RNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRG-HAGDALRFL 139

Query: 150 --QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
              + ++ V N ++ +S LSA +A + LR G+++HG + R+    D  + +AL DMY KC
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC 199

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
               +AR++FD M +R+VVSW ++I  Y Q G   E   LF E++ +G  P+  T + V+
Sbjct: 200 ERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVM 259

Query: 268 NACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCG----------------- 309
           +ACA  AAE  G+QVH +M  R          +ALV MY+KCG                 
Sbjct: 260 SACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSV 319

Query: 310 --------------NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
                         NVE+++ VF+ M   ++++W  LIA YAQNG  ++A+  F  L + 
Sbjct: 320 VSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD 379

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA----CIVDLLARS 410
              P H  +  VL AC +  ++  G Q + H +KE     +  +        +VD+  ++
Sbjct: 380 SIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKT 439

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-----ENPAT 465
           G   +   V  +M  + D   W +++ G   +G      RA +AL   E      ENP +
Sbjct: 440 GSIDDGAKVFERMAAR-DNVSWNAMIVGYAQNG------RAKDALHLFERMLCSNENPDS 492

Query: 466 YVTMANIYAS 475
            VTM  + ++
Sbjct: 493 -VTMIGVLSA 501



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 180/321 (56%), Gaps = 10/321 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P     SS++  C    A  EG++VH+H+ K    +  + ++N L+DMYAKCG   +A+ 
Sbjct: 250 PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARC 309

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD M  R V S  ++++G+ K  ++E A+ +F +M +++  +W  +I+ Y +  +  EA
Sbjct: 310 IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 369

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF------DSDEVV 196
           + L+  ++  ++     +T  +VL+A   I  L+LG++ H ++++ GF      +SD  V
Sbjct: 370 IRLFVQLKR-DSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFV 428

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L DMY K GSI++  ++F++M  RD VSW AMI  Y Q GR ++   LF  ++ S  
Sbjct: 429 GNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE 488

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSK 315
            P++ T  GVL+AC      + G++   +MT   G  P     + +V +  + G+++ ++
Sbjct: 489 NPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 548

Query: 316 KVFNGMP-RPDLVSWTSLIAG 335
           ++   MP  PD V W SL+  
Sbjct: 549 ELIKDMPTEPDSVLWASLLGA 569


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 260/453 (57%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++S++  C+   ALE GK++H  +  SG +  V + N L++MY +CG        
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCG-------- 581

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  SL+ ARN+F  +  RD  SWTAMI G     + ++A+
Sbjct: 582 -----------------------SLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAI 618

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  MQN E     K T SS+L   ++  CL  GK++  YI+ +G++ D  V +AL   
Sbjct: 619 ELFWQMQN-EGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISA 677

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K GS+ +AR++FDKM  RD+VSW  +I  Y Q G  +       ++ +  + PN F+F
Sbjct: 678 YSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSF 737

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +LNAC+  +A E GK+VH  + +          +AL+ MY+KCG+   +++VF+ +  
Sbjct: 738 VSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIE 797

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++V+W ++I  YAQ+G+  KAL +F  + K G +PD   F  +L+AC HAGLV +G Q 
Sbjct: 798 KNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQI 857

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S++ ++G+  T +HY C+V LL R+ RF EAE +I++MP  PD  +W +LLG CRIHG
Sbjct: 858 FSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHG 917

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N+ LA+ AA    ++   NPA Y+ ++N+YA+A
Sbjct: 918 NIALAEHAANNALKLNARNPAVYILLSNVYAAA 950



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 220/435 (50%), Gaps = 38/435 (8%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA+++  Q+      P    +  L+  C  + A  +GK +H  +  SG K    ++N L+
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALM 473

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           +MY +CG                               SL +A+N+F+    RD  SW +
Sbjct: 474 NMYRRCG-------------------------------SLMEAQNVFEGTQARDVISWNS 502

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI+G+ ++     A  L++ MQN E    N  T +SVLS     + L LGK+IHG I  +
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDN-ITFASVLSGCKNPEALELGKQIHGRITES 561

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G   D  + +AL +MY +CGS+ +AR +F  +  RDV+SWTAMIG    +G   +   LF
Sbjct: 562 GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELF 621

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++   G RP   TF+ +L  C   A  + GK+V  Y+   GY+  +   +AL+  YSK 
Sbjct: 622 WQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKS 681

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G++ ++++VF+ MP  D+VSW  +IAGYAQNG+   A+E+   + +    P+   FV +L
Sbjct: 682 GSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLL 741

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC+    +++G +  H+   K  L       A ++ + A+ G   EA++V   + ++ +
Sbjct: 742 NACSSFSALEEG-KRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKN 799

Query: 429 KFLWASLLGGCRIHG 443
              W +++     HG
Sbjct: 800 VVTWNAMINAYAQHG 814



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 213/437 (48%), Gaps = 39/437 (8%)

Query: 7   NQRRLKEALQILHQISHPSPS-----IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           N+R      + +     P P+      Y +L+Q C + R L E K++H+ +  +   P +
Sbjct: 3   NERHCGPDREDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDI 62

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+SN L++MY KC ++ DA                                 +F EMP+R
Sbjct: 63  FLSNLLINMYVKCRSVLDAH-------------------------------QVFKEMPRR 91

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  SW ++IS Y +     +A  L+  MQN    + NK T  S+L+A  +   L  GK+I
Sbjct: 92  DVISWNSLISCYAQQGFKKKAFQLFEEMQN-AGFIPNKITYISILTACYSPAELENGKKI 150

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  I++ G+  D  V ++L  MYGKCG +  ARQ+F  +  RDVVS+  M+G Y Q+   
Sbjct: 151 HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYV 210

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           +E   LF ++   GI P+  T+  +L+A    +  + GK++H      G +      +AL
Sbjct: 211 KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTAL 270

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V M  +CG+V+++K+ F G    D+V + +LIA  AQ+G   +A E +  +   G   + 
Sbjct: 271 VTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNR 330

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
             ++ +L AC+ +  ++ G +  HS   + G +        ++ + AR G   +A ++  
Sbjct: 331 TTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFY 389

Query: 422 KMPMKPDKFLWASLLGG 438
            MP K D   W +++ G
Sbjct: 390 TMP-KRDLISWNAIIAG 405



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/524 (26%), Positives = 240/524 (45%), Gaps = 80/524 (15%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           K+A Q+  ++ +    P+   Y S++  C     LE GKK+HS +  +G++    + N L
Sbjct: 110 KKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSL 169

Query: 68  LDM-------------------------------YAKCGNISDAQTLFDEMQER----DV 92
           L M                               YA+   + +   LF +M       D 
Sbjct: 170 LSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK 229

Query: 93  CSYNTMISGFT-----------------------------------KGGSLEQARNLFDE 117
            +Y  ++  FT                                   + G ++ A+  F  
Sbjct: 230 VTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKG 289

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
              RD   + A+I+   ++   +EA + Y  M++ +    N+ T  S+L+A S  + L  
Sbjct: 290 TADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS-DGVALNRTTYLSILNACSTSKALEA 348

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK IH +I   G  SD  + +AL  MY +CG + +AR++F  M  RD++SW A+I  Y +
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
              R E   L+ ++   G++P   TF  +L+ACA+ +A   GK +H  + R G       
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHL 468

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+AL++MY +CG++  ++ VF G    D++SW S+IAG+AQ+G  + A + F+ +     
Sbjct: 469 ANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL 528

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD+I F  VL+ C +   ++ G Q    I E  GL    +    ++++  R G   +A 
Sbjct: 529 EPDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDAR 587

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           +V   +  + D   W +++GGC   G  D+  +A E  ++++ E
Sbjct: 588 NVFHSLQHR-DVMSWTAMIGGCADQGE-DM--KAIELFWQMQNE 627



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 71/363 (19%)

Query: 11  LKEALQILHQISH-----------------------------------PSPSIYSSLIQF 35
           L++A  + H + H                                   P  S +SS+++ 
Sbjct: 583 LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKV 642

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C  +  L+EGKKV +++ +SG++    + N L+  Y+K G+++DA+ +FD+M  RD+ S+
Sbjct: 643 CTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSW 702

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I+G+ + G  + A     +M ++D                                 
Sbjct: 703 NKIIAGYAQNGLGQTAVEFAYQMQEQD--------------------------------V 730

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V NKF+  S+L+A S+   L  GK +H  I++     D  V +AL  MY KCGS  EA++
Sbjct: 731 VPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQE 790

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD +++++VV+W AMI  Y Q G   +    F+ + K GI+P+  TF  +L+AC +HA 
Sbjct: 791 VFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSAC-NHAG 849

Query: 276 EEL-GKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSL 332
             L G Q+   M +  G  P       LV +  +    + ++ + N MP  PD   W +L
Sbjct: 850 LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 909

Query: 333 IAG 335
           +  
Sbjct: 910 LGA 912



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 145/288 (50%), Gaps = 2/288 (0%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           + + T  ++L   +  + L   K IH  ++      D  + + L +MY KC S+ +A Q+
Sbjct: 25  TERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F +M  RDV+SW ++I  Y Q+G +++ F LF E+  +G  PN  T+  +L AC   A  
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           E GK++H  + + GY       ++L+ MY KCG++  +++VF G+   D+VS+ +++  Y
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQ     + L  F  +   G  PD + ++ +L A T   ++D+G +  H +  + GL   
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSD 263

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
                 +V +  R G    A+    K     D  ++ +L+     HG+
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAF-KGTADRDVVVYNALIAALAQHGH 310



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           Q  ++ A Q+  Q   P+   + SL+  C    ALEEGK+VH+ +     +  V +   L
Sbjct: 716 QTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAAL 775

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DN 123
           + MYAKCG+  +AQ +FD + E++V ++N MI+ + + G   +A   F+ M +     D 
Sbjct: 776 ISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDG 835

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            ++T+++S     N     L+ Y++  + E+      T+      V  +   R  +E   
Sbjct: 836 STFTSILSA---CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAET 892

Query: 184 YIMRTGFDSDEVVWSAL 200
            I +  F  D  VW  L
Sbjct: 893 LINQMPFPPDAAVWETL 909


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 291/546 (53%), Gaps = 76/546 (13%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L    R K+A  +  ++      P    + SL++ C    ALE+GKKVH+ +K  G+   
Sbjct: 287 LARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346

Query: 61  VFISNCLLDMYAKC-------------------------------GNISDAQTLFDEMQE 89
           +++   +L MY KC                               G I +A   F++M E
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 90  RDV-------------CS--------------------------YNTMISGFTKGGSLEQ 110
             +             CS                             ++S + K GSL+ 
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKD 466

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  +F+++ +++  +W AMI+ YV++ Q   AL  ++ +   E    N  T +S+L+   
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNVCK 525

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
           +   L LGK +H  IM+ G +SD  V +AL  M+  CG +  A+ +F+ M  RD+VSW  
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           +I  + Q G+ +  F  F  + +SGI+P+  TF G+LNACA   A   G+++H  +T   
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           +D      + L+ MY+KCG++E++ +VF+ +P+ ++ SWTS+IAGYAQ+G   +ALE F 
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFY 705

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            + + G +PD I FVG L+AC HAGL+++GL +F S+KE   +    +HY C+VDL  R+
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRA 764

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G  +EA + I KM ++PD  +W +LLG C++H N++LA++AA+   E++P +   +V ++
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824

Query: 471 NIYASA 476
           NIYA+A
Sbjct: 825 NIYAAA 830



 Score =  244 bits (623), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 262/476 (55%), Gaps = 47/476 (9%)

Query: 10  RLKEALQILHQISHPSPSIY----SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           +  EA+Q+L ++      IY    S+L+Q C + + L +G+++++H+K SG +P +F+  
Sbjct: 90  QFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMR- 148

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
                                         NT+I+ + K G+   A+ +FD+M ++D +S
Sbjct: 149 ------------------------------NTLINMYAKCGNTISAKQIFDDMREKDVYS 178

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           W  ++ GYV++    EA  L+  M   ++SV  +K T  S+L+A +  + +  G+E++  
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQM--VQDSVKPDKRTFVSMLNACADARNVDKGRELYNL 236

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I++ G+D+D  V +AL +M+ KCG I +A ++FD +  RD+V+WT+MI    + GR ++ 
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF  + + G++P+   F  +L AC    A E GK+VH  M  +G+D   +  +A++ M
Sbjct: 297 CNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSM 356

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG++E++ +VF+ +   ++VSWT++IAG+AQ+G  D+A  +F  +++SG +P+ + F
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTF 416

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH--YACIVDLLARSGRFHEAEDVISK 422
           + +L AC+    + +G Q    I E     Y +D      ++ + A+ G   +A  V  K
Sbjct: 417 MSILGACSSPSALKRGQQIQDHIIEA---GYGSDDRVRTALLSMYAKCGSLKDAHRVFEK 473

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYASA 476
           +  K +   W +++     H   D A    +AL +  I+P N +T+ ++ N+  S+
Sbjct: 474 IS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSS 527



 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 242/462 (52%), Gaps = 37/462 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q++     P    + S++  C   R +++G+++++ +  +G+   +F+   L++M+ KCG
Sbjct: 201 QMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCG 260

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           +I DA                                 +FD +P RD  +WT+MI+G  R
Sbjct: 261 DIGDAT-------------------------------KVFDNLPTRDLVTWTSMITGLAR 289

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           + +  +A +L++ M+  E    +K    S+L A +  + L  GK++H  +   G+D++  
Sbjct: 290 HGRFKQACNLFQRMEE-EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +A+  MY KCGS+ +A ++FD +  R+VVSWTAMI  + Q GR +E F  F+++I+SG
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           I PN  TF  +L AC+  +A + G+Q+  ++   GY       +AL+ MY+KCG+++++ 
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           +VF  + + ++V+W ++I  Y Q+   D AL  F+ LLK G +P+   F  +L  C  + 
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            ++ G ++ H +  K GL         +V +    G    A+++ + MP K D   W ++
Sbjct: 529 SLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTI 586

Query: 436 LGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
           + G   HG   +A    + + E  I+P+   T+  + N  AS
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDK-ITFTGLLNACAS 627



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 4/244 (1%)

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           +D     A++ R  + G+  E   +   +  S I+    T++ +L  C        G+++
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           + ++ + G  P  F  + L++MY+KCGN  ++K++F+ M   D+ SW  L+ GY Q+G+ 
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           ++A +  E +++   +PD   FV +L AC  A  VDKG + ++ I  K G          
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL-KAGWDTDLFVGTA 251

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEP 460
           ++++  + G   +A  V   +P + D   W S++ G   HG    A    + + E  ++P
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 461 ENPA 464
           +  A
Sbjct: 311 DKVA 314


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/504 (34%), Positives = 290/504 (57%), Gaps = 37/504 (7%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N   LK   ++L     P+   ++S+++ C +      G  +   +  +GF+  + +SN 
Sbjct: 165 NFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNS 224

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ +  + G I  A+ +FD M++RDV S+  ++  + + G L +AR +FDEMP+R+  SW
Sbjct: 225 LITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISW 284

Query: 127 TAMISGYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +AMI+ Y +     EAL L+  M  + F+ ++S     +  LSA+++++ L  G  IHG+
Sbjct: 285 SAMIARYSQSGYAEEALKLFSKMVQEGFKPNIS---CFACTLSALASLRALSAGINIHGH 341

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR--- 241
           + + G D D  + S+L D+Y KCG  ++ R +FD +++++VV W +M+G Y   GR    
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEX 401

Query: 242 ----------------------------EEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
                                       E+   +F+ L+ SG  PN  TF+ VL ACA  
Sbjct: 402 EELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           A+ + G  VHG + ++G     F  +AL  MY+KCG++ +SK+VF  MP  + +SWT +I
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMI 521

Query: 334 AGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
            G A++G   ++L  FE + + S   P+ ++ + VL AC+H GLVDKGL YF+S+++ +G
Sbjct: 522 QGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYG 581

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +     HY C+VDLL+RSGR +EAE+ I  +P +P+   WA+LL GC+ + +  +A+R A
Sbjct: 582 IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTA 641

Query: 453 EALFEIEPENPATYVTMANIYASA 476
           + L+++   N A YV ++NIYASA
Sbjct: 642 KKLWQLAENNSAGYVLLSNIYASA 665



 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 141/441 (31%), Positives = 218/441 (49%), Gaps = 67/441 (15%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + +SNC++  Y + GN+  A+ LFDEM ER+  S++ +ISG  K G +E++   F+  P 
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPF 146

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           ++  SWTA ISG+VR     EAL L+ R++++      N  T +SV+ A   +    LG 
Sbjct: 147 QNVVSWTAAISGFVRNGLNFEALKLFFRLLES--GVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 180 EIHGYIMRTGFD-------------------------------SDEVVWSALSDMYGKCG 208
            I G +++ GF+                                D V W+A+ D Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + EAR+IFD+M +R+ +SW+AMI RY Q G  EE   LFS++++ G +PN   FA  L+
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF---------- 318
           A A   A   G  +HG++T+IG D   F  S+L+ +Y KCG  ++ + VF          
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVC 384

Query: 319 ----------NG-----------MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
                     NG           +P  +  SW ++JAGY +N   +K LE F  LL SG 
Sbjct: 385 WNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQ 444

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+   F  VL AC     +DKG+   H    K G+ Y       + D+ A+ G    ++
Sbjct: 445 TPNKSTFSSVLCACASIASLDKGMN-VHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSK 503

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            V  +MP K ++  W  ++ G
Sbjct: 504 QVFERMPEK-NEISWTVMIQG 523



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 182/445 (40%), Gaps = 105/445 (23%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S L +F  Q   + +G  +H+HL  +GF    +I+  LL +Y  C   ++   +  E   
Sbjct: 26  SLLKKFSNQG-LITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDG 84

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
            D+   N                                MIS YV++   ++A  L+  M
Sbjct: 85  SDLVVSN-------------------------------CMISAYVQWGNLVQARLLFDEM 113

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                                                    + +EV WSAL     K G 
Sbjct: 114 P----------------------------------------ERNEVSWSALISGLMKYGR 133

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + E+   F++   ++VVSWTA I  + + G   E   LF  L++SG+RPN  TF  V+ A
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM------------------------- 304
           C +     LG  + G + + G++ Y   +++L+ +                         
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253

Query: 305 ------YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
                 Y + G++  ++++F+ MP  + +SW+++IA Y+Q+G  ++AL+ F  +++ G +
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+   F   L+A      +  G+   H    K G+       + ++DL  + G+  +   
Sbjct: 314 PNISCFACTLSALASLRALSAGIN-IHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR- 371

Query: 419 VISKMPMKPDKFLWASLLGGCRIHG 443
           ++  + ++ +   W S++GG  I+G
Sbjct: 372 LVFDLILEKNVVCWNSMVGGYSING 396



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 69/287 (24%)

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC---- 308
           K   R  A T   +L   ++      G  +H ++ + G+    + A  L+ +Y  C    
Sbjct: 14  KKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFA 73

Query: 309 ---------------------------GNVENSKKVFNGMPR------------------ 323
                                      GN+  ++ +F+ MP                   
Sbjct: 74  EIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGR 133

Query: 324 -------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
                         ++VSWT+ I+G+ +NG+  +AL+ F  LL+SG +P+ + F  V+ A
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C   G    G+     +  K G  +       ++ L  R G    A  V  +M  K D  
Sbjct: 194 CGELGDFGLGMSIL-GLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-KRDVV 251

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYASA 476
            W ++L      G+L  A+R    +F+  PE N  ++  M   Y+ +
Sbjct: 252 SWTAILDAYVETGDLREARR----IFDEMPERNEISWSAMIARYSQS 294


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/504 (34%), Positives = 290/504 (57%), Gaps = 37/504 (7%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N   LK   ++L     P+   ++S+++ C +      G  +   +  +GF+  + +SN 
Sbjct: 165 NFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNS 224

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ +  + G I  A+ +FD M++RDV S+  ++  + + G L +AR +FDEMP+R+  SW
Sbjct: 225 LITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISW 284

Query: 127 TAMISGYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +AMI+ Y +     EAL L+  M  + F+ ++S     +  LSA+++++ L  G  IHG+
Sbjct: 285 SAMIARYSQSGYAEEALKLFSKMVQEGFKPNIS---CFACTLSALASLRALSAGINIHGH 341

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR--- 241
           + + G D D  + S+L D+Y KCG  ++ R +FD +++++VV W +M+G Y   GR    
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401

Query: 242 ----------------------------EEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
                                       E+   +F+ L+ SG  PN  TF+ VL ACA  
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           A+ + G  VHG + ++G     F  +AL  MY+KCG++ +SK+VF  MP  + +SWT +I
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMI 521

Query: 334 AGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
            G A++G   ++L  FE + + S   P+ ++ + VL AC+H GLVDKGL YF+S+++ +G
Sbjct: 522 QGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYG 581

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +     HY C+VDLL+RSGR +EAE+ I  +P +P+   WA+LL GC+ + +  +A+R A
Sbjct: 582 IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTA 641

Query: 453 EALFEIEPENPATYVTMANIYASA 476
           + L+++   N A YV ++NIYASA
Sbjct: 642 KKLWQLAENNSAGYVLLSNIYASA 665



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 219/441 (49%), Gaps = 67/441 (15%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + +SNC++  Y + GN+  A+ LFDEM ER+  S++ +ISG  K G +E++   F+  P 
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPF 146

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           ++  SWTA ISG+VR     EAL L+ R++++      N  T +SV+ A   +    LG 
Sbjct: 147 QNVVSWTAAISGFVRNGLNFEALKLFFRLLES--GVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 180 EIHGYIMRTGFD-------------------------------SDEVVWSALSDMYGKCG 208
            I G +++ GF+                                D V W+A+ D Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + EAR+IFD+M +R+ +SW+AMI RY Q G  EE   LFS++++ G +PN   FA  L+
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF---------- 318
           A A   A   G  +HG++T+IG D   F  S+L+ +Y KCG  ++ + VF          
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVC 384

Query: 319 ----------NG-----------MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
                     NG           +P  + VSW ++IAGY +N   +K LE F  LL SG 
Sbjct: 385 WNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQ 444

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+   F  VL AC     +DKG+   H    K G+ Y       + D+ A+ G    ++
Sbjct: 445 TPNKSTFSSVLCACASIASLDKGMN-VHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSK 503

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            V  +MP K ++  W  ++ G
Sbjct: 504 QVFERMPEK-NEISWTVMIQG 523



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/444 (21%), Positives = 181/444 (40%), Gaps = 104/444 (23%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL++       + +G  +H+HL  +GF    +I+  LL +Y  C   ++   +  E    
Sbjct: 26  SLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGS 85

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+   N                                MIS YV++   ++A  L+  M 
Sbjct: 86  DLVVSN-------------------------------CMISAYVQWGNLVQARLLFDEMP 114

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                                                   + +EV WSAL     K G +
Sbjct: 115 ----------------------------------------ERNEVSWSALISGLMKYGRV 134

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            E+   F++   ++VVSWTA I  + + G   E   LF  L++SG+RPN  TF  V+ AC
Sbjct: 135 EESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRAC 194

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM-------------------------- 304
            +     LG  + G + + G++ Y   +++L+ +                          
Sbjct: 195 GELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWT 254

Query: 305 -----YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
                Y + G++  ++++F+ MP  + +SW+++IA Y+Q+G  ++AL+ F  +++ G +P
Sbjct: 255 AILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKP 314

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           +   F   L+A      +  G+   H    K G+       + ++DL  + G+  +   +
Sbjct: 315 NISCFACTLSALASLRALSAGIN-IHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR-L 372

Query: 420 ISKMPMKPDKFLWASLLGGCRIHG 443
           +  + ++ +   W S++GG  I+G
Sbjct: 373 VFDLILEKNVVCWNSMVGGYSING 396



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 69/287 (24%)

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC---- 308
           K   R  A T   +L   ++      G  +H ++ + G+    + A  L+ +Y  C    
Sbjct: 14  KKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFA 73

Query: 309 ---------------------------GNVENSKKVFNGMPR------------------ 323
                                      GN+  ++ +F+ MP                   
Sbjct: 74  EIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGR 133

Query: 324 -------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
                         ++VSWT+ I+G+ +NG+  +AL+ F  LL+SG +P+ + F  V+ A
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C   G    G+     +  K G  +       ++ L  R G    A  V  +M  K D  
Sbjct: 194 CGELGDFGLGMSIL-GLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-KRDVV 251

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYASA 476
            W ++L      G+L  A+R    +F+  PE N  ++  M   Y+ +
Sbjct: 252 SWTAILDAYVETGDLREARR----IFDEMPERNEISWSAMIARYSQS 294


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 258/451 (57%), Gaps = 33/451 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           + Y S++  C  ++ALE GK +HSH+   G    V I N L+ MYA+C            
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC------------ 378

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                              G L +AR LF  MP+RD  SW A+I+GY R     EA+ LY
Sbjct: 379 -------------------GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLY 419

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           + MQ+ E     + T   +LSA +       GK IH  I+R+G  S+  + +AL +MY +
Sbjct: 420 KQMQS-EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRR 478

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CGS+ EA+ +F+    RDV+SW +MI  + Q G  E  + LF E+    + P+  TFA V
Sbjct: 479 CGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+ C +  A ELGKQ+HG +T  G        +AL++MY +CG++++++ VF+ +   D+
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV 598

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +SWT++I G A  G   KA+E F  +   G + PD   F  +L+AC HAGLV +G Q F 
Sbjct: 599 MSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFS 658

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           S++ ++G+  T +HY C+V LL R+ RF EAE +I++MP  PD  +W +LLG CRIHGN+
Sbjct: 659 SMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNI 718

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
            LA+ AA    ++   NPA Y+ ++N+YA+A
Sbjct: 719 ALAEHAANNALKLNARNPAVYILLSNVYAAA 749



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 215/437 (49%), Gaps = 39/437 (8%)

Query: 7   NQRRLKEALQILHQISHPSPS-----IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           N+R      + +     P P+      Y +L+Q C + R L E K++H+ +  +G  P +
Sbjct: 3   NERHCGPDREDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDI 62

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+SN L++MY KC ++ DA                                 +F EMP+R
Sbjct: 63  FLSNLLINMYVKCRSVLDAH-------------------------------QVFKEMPRR 91

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  SW ++IS Y +     +A  L+  MQN    + NK T  S+L+A  +   L  GK+I
Sbjct: 92  DVISWNSLISCYAQQGFKKKAFQLFEEMQN-AGFIPNKITYISILTACYSPAELENGKKI 150

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  I++ G+  D  V ++L  MYGKCG +  ARQ+F  +  RDVVS+  M+G Y Q+   
Sbjct: 151 HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYV 210

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           +E   LF ++   GI P+  T+  +L+A    +  + GK++H      G +      +AL
Sbjct: 211 KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTAL 270

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V M  +CG+V+++K+ F G+   D+V + +LIA  AQ+G   +A E +  +   G   + 
Sbjct: 271 VTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNR 330

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
             ++ +L AC+ +  ++ G +  HS   + G +        ++ + AR G   +A ++  
Sbjct: 331 TTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFY 389

Query: 422 KMPMKPDKFLWASLLGG 438
            MP K D   W +++ G
Sbjct: 390 TMP-KRDLISWNAIIAG 405



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/524 (26%), Positives = 241/524 (45%), Gaps = 80/524 (15%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           K+A Q+  ++ +    P+   Y S++  C     LE GKK+HS +  +G++    + N L
Sbjct: 110 KKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSL 169

Query: 68  LDM-------------------------------YAKCGNISDAQTLFDEMQER----DV 92
           L M                               YA+   + +   LF +M       D 
Sbjct: 170 LSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK 229

Query: 93  CSYNTMISGFT-----------------------------------KGGSLEQARNLFDE 117
            +Y  ++  FT                                   + G ++ A+  F  
Sbjct: 230 VTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKG 289

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  RD   + A+I+   ++   +EA + Y  M++ +    N+ T  S+L+A S  + L  
Sbjct: 290 IADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS-DGVALNRTTYLSILNACSTSKALEA 348

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK IH +I   G  SD  + +AL  MY +CG + +AR++F  M  RD++SW A+I  Y +
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
              R E   L+ ++   G++P   TF  +L+ACA+ +A   GK +H  + R G       
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHL 468

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+AL++MY +CG++  ++ VF G    D++SW S+IAG+AQ+G  + A + F+ +     
Sbjct: 469 ANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL 528

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD+I F  VL+ C +   ++ G Q    I E  GL    +    ++++  R G   +A 
Sbjct: 529 EPDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDAR 587

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           +V   +  + D   W +++GGC   G  D+  +A E  ++++ E
Sbjct: 588 NVFHSLQHR-DVMSWTAMIGGCADQGE-DM--KAIELFWQMQNE 627



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 148/288 (51%), Gaps = 2/288 (0%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           +++ T  ++L   +  + L   K IH  ++  G   D  + + L +MY KC S+ +A Q+
Sbjct: 25  TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F +M  RDV+SW ++I  Y Q+G +++ F LF E+  +G  PN  T+  +L AC   A  
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           E GK++H  + + GY       ++L+ MY KCG++  +++VF G+   D+VS+ +++  Y
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQ     + L  F  +   G  PD + ++ +L A T   ++D+G +  H +  + GL   
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSD 263

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
                 +V +  R G    A+     +  + D  ++ +L+     HG+
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQHGH 310


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 271/469 (57%), Gaps = 36/469 (7%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA +I HQ+      P+   Y  L+  C    AL  G+++HS +   GF   + + N L
Sbjct: 428 EEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNAL 487

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+C                               GS++ AR LF++M ++D  SWT
Sbjct: 488 ISMYARC-------------------------------GSIKDARLLFNKMVRKDIISWT 516

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AMI G  +     EAL +++ MQ       N+ T +S+L+A S+   L  G+ IH  ++ 
Sbjct: 517 AMIGGLAKSGLGAEALAVFQDMQQ-AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE 575

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G  +D  V + L +MY  CGS+ +ARQ+FD+M  RD+V++ AMIG Y      +E   L
Sbjct: 576 AGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKL 635

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  L + G++P+  T+  +LNACA+  + E  K++H  + + GY   +   +ALV  Y+K
Sbjct: 636 FDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAK 695

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+  ++  VF+ M + +++SW ++I G AQ+G     L+ FE +   G +PD + FV +
Sbjct: 696 CGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSL 755

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC+HAGL+++G +YF S+    G+T T +HY C+VDLL R+G+  E E +I  MP + 
Sbjct: 756 LSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQA 815

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +  +W +LLG CRIHGN+ +A+RAAE+  +++P+N A YV ++++YA+A
Sbjct: 816 NTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAA 864



 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 250/474 (52%), Gaps = 45/474 (9%)

Query: 11  LKEALQILHQISHPSPSIYSS----LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           ++EAL++L ++     ++  +    L+  C+   ALE G+++H     +     V ++NC
Sbjct: 225 IEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANC 284

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +L+MYAKCG                               S+ +AR +FD+M  +   SW
Sbjct: 285 ILNMYAKCG-------------------------------SIHEAREVFDKMETKSVVSW 313

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T +I GY        A ++++ MQ  E  V N+ T  +VL+A S    L+ GK +H +I+
Sbjct: 314 TIIIGGYADCGHSEIAFEIFQKMQQ-EGVVPNRITYINVLNAFSGPAALKWGKTVHSHIL 372

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G +SD  V +AL  MY KCGS  + RQ+F+K+V+RD+++W  MIG   + G  EE   
Sbjct: 373 NAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASE 432

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           ++ ++ + G+ PN  T+  +LNAC +  A   G+++H  + + G+       +AL+ MY+
Sbjct: 433 IYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYA 492

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           +CG++++++ +FN M R D++SWT++I G A++G+  +AL  F+ + ++G +P+ + +  
Sbjct: 493 RCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTS 552

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC+    +D G +    + E  GL   A     +V++ +  G   +A  V  +M  +
Sbjct: 553 ILNACSSPAALDWGRRIHQQVIEA-GLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR 611

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMANIYASA 476
            D   + +++GG   H   +L K A +    ++ E    +  TY+ M N  A++
Sbjct: 612 -DIVAYNAMIGGYAAH---NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANS 661



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 221/432 (51%), Gaps = 37/432 (8%)

Query: 10  RLKEALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R  + +Q L Q      S  Y  +++ C + + L  G++VH H+         +  N L+
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 69  DMYAKCGNISDAQTLFDEMQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +MY +CG+I +A+ +++++   ER V S+N M+ G+ + G +E+A  L  EM Q      
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ------ 237

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                           L L R         +    L S   + SA++C   G+EIH   M
Sbjct: 238 --------------HGLALGR---------ATTMRLLSSCKSPSALEC---GREIHVEAM 271

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +     D  V + + +MY KCGSI+EAR++FDKM  + VVSWT +IG Y   G  E  F 
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFE 331

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F ++ + G+ PN  T+  VLNA +  AA + GK VH ++   G++      +ALV MY+
Sbjct: 332 IFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYA 391

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG+ ++ ++VF  +   DL++W ++I G A+ G  ++A E +  + + G  P+ I +V 
Sbjct: 392 KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVI 451

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC +   +  G +  HS   K G  +       ++ + AR G   +A  + +KM ++
Sbjct: 452 LLNACVNPTALHWGRE-IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKM-VR 509

Query: 427 PDKFLWASLLGG 438
            D   W +++GG
Sbjct: 510 KDIISWTAMIGG 521



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 173/344 (50%), Gaps = 28/344 (8%)

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+D+ + +Q  + +  N      +L     ++ L  G+E+H +I++     D+   +AL 
Sbjct: 125 AMDVVQYLQQ-QGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 202 DMYGKCGSINEARQIFDKM--VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           +MY +CGSI EARQ+++K+   +R V SW AM+  Y Q G  EE   L  E+ + G+   
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 260 AFTFAGVLNACADHAAEELGKQVH--GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
             T   +L++C   +A E G+++H      R+ +D     A+ +++MY+KCG++  +++V
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVN--VANCILNMYAKCGSIHEAREV 301

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+ M    +VSWT +I GYA  G  + A E F+ + + G  P+ I ++ VL A +    +
Sbjct: 302 FDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 378 DKGLQYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
             G       K  H     A H +       +V + A+ G + +   V  K+ +  D   
Sbjct: 362 KWG-------KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIA 413

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMAN 471
           W +++GG    GN +    A+E   +++ E    N  TYV + N
Sbjct: 414 WNTMIGGLAEGGNWE---EASEIYHQMQREGMMPNKITYVILLN 454


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 276/478 (57%), Gaps = 46/478 (9%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AI   C  R   E          P+   +SS I+ C    ++E GK++H      G    
Sbjct: 90  AIRTFCGMRICGEV---------PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE 140

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+ + L DMY+KCG + DA            C                    +F+EMP 
Sbjct: 141 LFVGSNLEDMYSKCGAMFDA------------C-------------------KVFEEMPC 169

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +D  SWTAMI GY +  +  EAL  ++ M + E ++ ++  L S L A  A++  + G+ 
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTI-DQHVLCSTLGACGALKACKFGRS 228

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQ 237
           +H  +++ GF+SD  V +AL+DMY K G +  A  +F   +D   R+VVS+T +I  Y +
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG--IDSECRNVVSYTCLIDGYVE 286

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             + E+G ++F EL + GI PN FTF+ ++ ACA+ AA E G Q+H  + +I +D   F 
Sbjct: 287 TEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFV 346

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           +S LV MY KCG +E + + F+ +  P  ++W SL++ + Q+G+   A++ FE ++  G 
Sbjct: 347 SSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGV 406

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P+ I F+ +LT C+HAGLV++GL YF+S+ + +G+    +HY+C++DLL R+GR  EA+
Sbjct: 407 KPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAK 466

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           + I++MP +P+ F W S LG CRIHG+ ++ K AAE L ++EP+N    V ++NIYA+
Sbjct: 467 EFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 524



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 221/448 (49%), Gaps = 52/448 (11%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +IQ   + + L  GK++H+ L  +G+ P  F++N L++MY+KCG +  A  LFD M +R+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           + S+  MISG ++     +A   F  M           I G                   
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGM----------RICG------------------- 101

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
               V  +F  SS + A +++  + +GK++H   ++ G  S+  V S L DMY KCG++ 
Sbjct: 102 ---EVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMF 158

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A ++F++M  +D VSWTAMI  Y + G  EE    F ++I   +  +       L AC 
Sbjct: 159 DACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP--DLVSW 329
              A + G+ VH  + ++G++   F  +AL  MYSK G++E++  VF G+     ++VS+
Sbjct: 219 ALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSY 277

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T LI GY +    +K L  F  L + G +P+   F  ++ AC +   +++G Q    + +
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK 337

Query: 390 KHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
              + +  D +  + +VD+  + G   +A     ++   P +  W SL+    + G   L
Sbjct: 338 ---INFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVS---VFGQHGL 390

Query: 448 AKRAAEALFE------IEPENPATYVTM 469
            K A + +FE      ++P N  T++++
Sbjct: 391 GKDAIK-IFERMVDRGVKP-NAITFISL 416



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 159/348 (45%), Gaps = 35/348 (10%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L+ V+   +  + LR GK++H  ++  G+     + + L +MY KCG ++ A ++FD M 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMP 67

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R++VSWTAMI    Q  +  E    F  +   G  P  F F+  + ACA   + E+GKQ
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    + G     F  S L  MYSKCG + ++ KVF  MP  D VSWT++I GY++ G 
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTAC-----------THAGLVDKGLQ-------Y 383
            ++AL  F+ ++      D  V    L AC            H+ +V  G +        
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 384 FHSIKEKHGLTYTADH-------------YACIVDLLARSGRFHEAEDV---ISKMPMKP 427
              +  K G   +A +             Y C++D    + +  +   V   + +  ++P
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE-PENPATYVTMANIYA 474
           ++F ++SL+  C     L+   +    + +I   E+P     + ++Y 
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYG 355


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 168/450 (37%), Positives = 264/450 (58%), Gaps = 34/450 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y S++  C    A+ EG++VH+H+  + ++P V++   L+ +Y KC  + DA        
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA-------- 64

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  R + DEMP+R+  SWTAMISGY +     EAL L+  
Sbjct: 65  -----------------------RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVE 101

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M     +  N+FT ++VL++ ++    +LG++IH  +++T F+S   V S+L DMY K G
Sbjct: 102 ML-MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAG 160

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I EAR++FD + +RDVVS TA+I  Y Q G  EE   LF  L + G+R N  T+A VL 
Sbjct: 161 KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLT 220

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A +  AA + G+QVH ++ R     Y    ++L+ MYSKCG++  S+++F+ MP   ++S
Sbjct: 221 ALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS 280

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHS- 386
           W +++ GY+++G+  +A+E F+L+ +    +PD + F+ VL+ C+H G+ D+GL+ F+  
Sbjct: 281 WNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEM 340

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + +K G     +HY C+VDL  R+GR  EA + I KMP +P   +W SLLG CR+H N+ 
Sbjct: 341 VNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVH 400

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           + +  A  L EIE EN   YV ++N+YASA
Sbjct: 401 IGEFVARRLLEIESENAGNYVILSNLYASA 430



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 171/326 (52%), Gaps = 38/326 (11%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +++L   + P+   +++++  C  +   + G+++HS +  + F+  +F+ + LLDMYAK 
Sbjct: 100 VEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKA 159

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G I +A+ +FD + ERDV S   +ISG+ + G         DE                 
Sbjct: 160 GKICEARRVFDGLPERDVVSCTAIISGYAQLG--------LDE----------------- 194

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                 EALDL+R +Q  E   SN  T +SVL+A+S +  L  G+++H +++R       
Sbjct: 195 ------EALDLFRRLQR-EGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 247

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK- 253
           V+ ++L DMY KCGS+  +R+IFD M +R V+SW AM+  Y + G   E   LF +L+K 
Sbjct: 248 VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELF-KLMKE 306

Query: 254 -SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT--RIGYDPYSFAASALVHMYSKCGN 310
            + ++P++ TF  VL+ C+    E+ G ++   M   + G++P       +V ++ + G 
Sbjct: 307 ENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGR 366

Query: 311 VENSKKVFNGMP-RPDLVSWTSLIAG 335
           VE + +    MP  P    W SL+  
Sbjct: 367 VEEAFEFIKKMPFEPTAAIWGSLLGA 392


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 276/478 (57%), Gaps = 46/478 (9%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           AI   C  R   E          P+   +SS I+ C    ++E GK++H      G    
Sbjct: 25  AIRTFCGMRICGEV---------PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE 75

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+ + L DMY+KCG + DA            C                    +F+EMP 
Sbjct: 76  LFVGSNLEDMYSKCGAMFDA------------C-------------------KVFEEMPC 104

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +D  SWTAMI GY +  +  EAL  ++ M + E ++ ++  L S L A  A++  + G+ 
Sbjct: 105 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTI-DQHVLCSTLGACGALKACKFGRS 163

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQ 237
           +H  +++ GF+SD  V +AL+DMY K G +  A  +F   +D   R+VVS+T +I  Y +
Sbjct: 164 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG--IDSECRNVVSYTCLIDGYVE 221

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             + E+G ++F EL + GI PN FTF+ ++ ACA+ AA E G Q+H  + +I +D   F 
Sbjct: 222 TEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFV 281

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           +S LV MY KCG +E + + F+ +  P  ++W SL++ + Q+G+   A++ FE ++  G 
Sbjct: 282 SSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGV 341

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P+ I F+ +LT C+HAGLV++GL YF+S+ + +G+    +HY+C++DLL R+GR  EA+
Sbjct: 342 KPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAK 401

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           + I++MP +P+ F W S LG CRIHG+ ++ K AAE L ++EP+N    V ++NIYA+
Sbjct: 402 EFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 459



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 189/362 (52%), Gaps = 21/362 (5%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MPQR+  SWTAMISG  + ++  EA+  +  M+     V  +F  SS + A +++  + +
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMR-ICGEVPTQFAFSSAIRACASLGSIEM 59

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK++H   ++ G  S+  V S L DMY KCG++ +A ++F++M  +D VSWTAMI  Y +
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  EE    F ++I   +  +       L AC    A + G+ VH  + ++G++   F 
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRP--DLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
            +AL  MYSK G++E++  VF G+     ++VS+T LI GY +    +K L  F  L + 
Sbjct: 180 GNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 238

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRF 413
           G +P+   F  ++ AC +   +++G Q    + +   + +  D +  + +VD+  + G  
Sbjct: 239 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK---INFDEDPFVSSILVDMYGKCGLL 295

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPENPATYV 467
            +A     ++   P +  W SL+    + G   L K A + +FE      ++P N  T++
Sbjct: 296 EQAIQAFDEIG-DPTEIAWNSLVS---VFGQHGLGKDAIK-IFERMVDRGVKP-NAITFI 349

Query: 468 TM 469
           ++
Sbjct: 350 SL 351


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 177/480 (36%), Positives = 276/480 (57%), Gaps = 7/480 (1%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP- 59
            I I  N + L EAL +   +  P    + S+I+                 +++SG  P 
Sbjct: 45  VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPD 104

Query: 60  -GVF---ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
             VF   + +C + M  + G       +   M + D+ + N +++ ++K   ++  R +F
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGM-DCDLYTGNALMNMYSKLLGIDSVRKVF 163

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
           + MP++D  S+  +I+GY +     +AL + R M    +   + FTLSSVL   S    +
Sbjct: 164 ELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGT-SDLKPDAFTLSSVLPIFSEYVDV 222

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
             GKEIHGY++R G DSD  + S+L DMY K   I ++ ++F  +  RD +SW +++  Y
Sbjct: 223 LKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGY 282

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q GR  E   LF +++ + +RP A  F+ V+ ACA  A   LGKQ+HGY+ R G+    
Sbjct: 283 VQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNI 342

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F ASALV MYSKCGN++ ++K+F+ M   D VSWT++I G+A +G   +A+  FE + + 
Sbjct: 343 FIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 402

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +P+ + FV VLTAC+H GLVD+   YF+S+ + +GL    +HYA + DLL R+G+  E
Sbjct: 403 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 462

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A D ISKM ++P   +W++LL  C +H NL+LA++ AE +F I+ EN   YV M N+YAS
Sbjct: 463 AYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYAS 522



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 3/294 (1%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           S+K  + +++   + I+     K++H   +RT   S     S +  +Y     ++EA  +
Sbjct: 3   SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLV 61

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F  +    V++W ++I  +  +       A F E+  SG  P+   F  VL +C      
Sbjct: 62  FKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
             G+ VHG++ R+G D   +  +AL++MYSK   +++ +KVF  MPR D+VS+ ++IAGY
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGY 181

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQ+GM + AL     +  S  +PD      VL   +    V KG +  H    + G+   
Sbjct: 182 AQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKE-IHGYVIRKGIDSD 240

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
               + +VD+ A+S R  ++E V S +  + D   W SL+ G   +G  + A R
Sbjct: 241 VYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLVAGYVQNGRYNEALR 293


>gi|302143464|emb|CBI22025.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 270/460 (58%), Gaps = 1/460 (0%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LC++  LK+A           PS++S L+Q C    +L  GK++HS + +SG     FIS
Sbjct: 31  LCSKGHLKQAFDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFIS 90

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL++Y+KCG +  A TLF  M  +++ S N +I+G+ + G    AR +FDEMP+R+  
Sbjct: 91  NHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVA 150

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +W AM++G +++    E L L+  M      + ++F L SVL   + ++ L  G+++HGY
Sbjct: 151 TWNAMVAGLIQFEFNEEGLGLFSRMNEL-GFLPDEFALGSVLRGCAGLRALVAGRQVHGY 209

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           + + GF+ + VV S+L+ MY KCGS+ E  ++   M  ++VV+W  +I    Q G  EE 
Sbjct: 210 VRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEV 269

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
              ++ +  +G RP+  TF  V+++C++ A    G+Q+H  + + G        S+L+ M
Sbjct: 270 LDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISM 329

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YS+CG +E S KVF      D+V W+S+IA Y  +G   +A++ F  + +   + + + F
Sbjct: 330 YSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTF 389

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           + +L AC+H GL +KG+++F  + EK+G+    +HY C+VDLL R G   EAE +I  MP
Sbjct: 390 LSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMP 449

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           +K D   W +LL  C+IH   ++A+R +E +F ++P +P 
Sbjct: 450 VKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPV 489


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 180/484 (37%), Positives = 268/484 (55%), Gaps = 70/484 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S +  C   +    G++VH  +  S     V I + L+DMYAKC    DA+ +FD M 
Sbjct: 154 FASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMP 213

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           ER+V S+N++I+ + + G + +A  LF EM          M +G+               
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALMLFVEM----------MAAGF--------------- 248

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKC 207
                    ++ TLSSV+SA + +   R G+++H ++++      D V+ +AL DMY KC
Sbjct: 249 -------SPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKC 301

Query: 208 GSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRYF 236
           G   EAR IFD                               +MV+++V++W  +I  Y 
Sbjct: 302 GRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYA 361

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG----YD 292
           Q G  EE   LF +L +  I P  +T+  VLNAC + A  +LG+Q H ++ + G    + 
Sbjct: 362 QNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFG 421

Query: 293 PYS--FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           P S  F  ++LV MY K G++++  KVF  M   D VSW ++I GYAQNG    AL  FE
Sbjct: 422 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFE 481

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +L S   PD +  +GVL+AC H+GLVD+G +YFHS+ E HG+T + DHY C+VDLL R+
Sbjct: 482 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRA 541

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   EAE++I+ MPM+PD  LWASLLG CR+H N++L +  A  LFE++P+N   YV ++
Sbjct: 542 GHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLS 601

Query: 471 NIYA 474
           N+YA
Sbjct: 602 NMYA 605



 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 242/492 (49%), Gaps = 57/492 (11%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S L    R    L   +  H+ +  S      F+ N L+  YA+ G + DA+ +FDE+  
Sbjct: 21  SPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPL 80

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R+  SYN ++S + + G  ++AR LF+ +P  D  S+ A+++   R+ +   A D  R +
Sbjct: 81  RNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRG-HAADALRFL 139

Query: 150 --QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
              + ++ V N ++ +S LSA +A +  R G+++HG + R+    D  + SAL DMY KC
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKC 199

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
               +AR++FD M +R+VVSW ++I  Y Q G   E   LF E++ +G  P+  T + V+
Sbjct: 200 ERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVM 259

Query: 268 NACADHAAEELGKQVHGYMT---RIGYDPYSFAASALVHMYSKCG--------------- 309
           +ACA  AA+  G+QVH +M    R+  D      +ALV MY+KCG               
Sbjct: 260 SACAGLAADREGRQVHAHMVKCDRLRDD--MVLNNALVDMYAKCGRTWEARCIFDSMPSR 317

Query: 310 ----------------NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
                           NVE+++ VF+ M   ++++W  LIA YAQNG  ++A+  F  L 
Sbjct: 318 SIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLK 377

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA----CIVDLLA 408
           +    P H  +  VL AC +   +  G Q + H +KE     +  +        +VD+  
Sbjct: 378 RDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYL 437

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE-----PENP 463
           ++G   +   V  +M  + D   W +++ G   +G      RA +AL   E      ENP
Sbjct: 438 KTGSIDDGAKVFERMAAR-DNVSWNAMIVGYAQNG------RAKDALHLFERMLCSNENP 490

Query: 464 ATYVTMANIYAS 475
            + VTM  + ++
Sbjct: 491 DS-VTMIGVLSA 501



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 180/321 (56%), Gaps = 10/321 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P     SS++  C    A  EG++VH+H+ K    +  + ++N L+DMYAKCG   +A+ 
Sbjct: 250 PDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARC 309

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD M  R + S  ++++G+ K  ++E A+ +F +M +++  +W  +I+ Y +  +  EA
Sbjct: 310 IFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 369

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF------DSDEVV 196
           + L+  ++  ++     +T  +VL+A   I  L+LG++ H ++++ GF      +SD  V
Sbjct: 370 IRLFVQLKR-DSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFV 428

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L DMY K GSI++  ++F++M  RD VSW AMI  Y Q GR ++   LF  ++ S  
Sbjct: 429 GNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE 488

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSK 315
            P++ T  GVL+AC      + G++    MT   G  P     + +V +  + G+++ ++
Sbjct: 489 NPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 548

Query: 316 KVFNGMP-RPDLVSWTSLIAG 335
           ++ N MP  PD V W SL+  
Sbjct: 549 ELINDMPMEPDSVLWASLLGA 569


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 177/462 (38%), Positives = 265/462 (57%), Gaps = 33/462 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P       +++ C ++RA+ EG++VH      G    V++SN L+ MYA C 
Sbjct: 115 QMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVC- 173

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                          DV               +  AR +FD  PQRD  SWT MI GYV+
Sbjct: 174 ---------------DV---------------IRSARKVFDTSPQRDLVSWTTMIQGYVK 203

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR-TGFDSDE 194
                E + L+  M   EN  ++  TL  VLS+ + +  LRLG+++H YI+R +  + D 
Sbjct: 204 MGFAREGVGLFFEMCG-ENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL DMY KCG  N AR++F +M  ++VVSW +MI    Q+G+ +E   +F ++ + 
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 322

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G++P+  T   VLN+CA+    ELGK VH Y+ R       F  +ALV MY+KCG+++ +
Sbjct: 323 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQA 382

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
             VF  M R D+ S+T++I G A +G   KAL+ F  + K G +PD + FVGVLTAC+H 
Sbjct: 383 CWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHV 442

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLV++G +YF  +   + L    +HY C+VDLL R+G  +EAE+ I  MP++PD F+  +
Sbjct: 443 GLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGA 502

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LLG C+IHG ++L +   + + +IEP     YV M+NIY+SA
Sbjct: 503 LLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSA 544


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 172/470 (36%), Positives = 266/470 (56%), Gaps = 36/470 (7%)

Query: 11  LKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           + EA  + H++      P    +SS +    +   L +GK++H ++  +G    VF+ + 
Sbjct: 330 MDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSA 389

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+Y KC               RDV                E AR +FD+    D    
Sbjct: 390 LIDIYFKC---------------RDV----------------EMARKIFDQRTPVDIVVC 418

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMISGYV       AL+++R +   E   +N  TL+SVL A + +  L LGKE+HG+I+
Sbjct: 419 TAMISGYVLNGMNNNALEIFRWLLQ-ERMRANSVTLASVLPACAGLAALTLGKELHGHIL 477

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G      V SA+ DMY KCG ++ A Q F  + D+D V W +MI    Q G+ EE   
Sbjct: 478 KNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAID 537

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++  +G + +  + +  L+ACA+  A   GK++H +M R  +    FA SAL+ MYS
Sbjct: 538 LFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYS 597

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCGN++ + +VF+ M   + VSW S+IA Y  +G    +L  F  +L  G QPDH+ F+ 
Sbjct: 598 KCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLA 657

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +++AC HAG VD+G+ YF  + E+ G+    +HYAC+VDL  R+GR +EA  +I+ MP  
Sbjct: 658 IISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFS 717

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LLG CR+HGN++LA+ A+  LF+++P+N   YV ++N++A+A
Sbjct: 718 PDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANA 767



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 217/430 (50%), Gaps = 46/430 (10%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           ++P+   ++ ++  C     +  G ++H  + SSG +    ++N LL MYAKCG++ DA+
Sbjct: 244 TNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDAR 303

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            LFD M + D+ ++N MISG+ + G +++A  LF E           MIS  ++      
Sbjct: 304 RLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHE-----------MISARMK------ 346

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
                           +  T SS L  +S    LR GKEIH YI+R G   D  + SAL 
Sbjct: 347 ---------------PDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALI 391

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y KC  +  AR+IFD+    D+V  TAMI  Y   G       +F  L++  +R N+ 
Sbjct: 392 DIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSV 451

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T A VL ACA  AA  LGK++HG++ + G+    +  SA++ MY+KCG ++ + + F G+
Sbjct: 452 TLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGI 511

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D V W S+I   +QNG P++A++ F  +  +GT+ D +     L+AC +       L
Sbjct: 512 SDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACAN-------L 564

Query: 382 QYFHSIKEKHGL----TYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
              H  KE H       + +D +A   ++D+ ++ G    A  V   M  K ++  W S+
Sbjct: 565 PALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEK-NEVSWNSI 623

Query: 436 LGGCRIHGNL 445
           +     HG L
Sbjct: 624 IAAYGNHGRL 633



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 208/421 (49%), Gaps = 36/421 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +I+ C    ++  G+ VH  ++  GF+  VF+ + L+  Y++ G I DA+ L
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  +D   +N M++G+ K G  + A  +F EM                         
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM------------------------- 239

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
              R  +   NSV    T + VLS  ++   +  G ++HG ++ +G + D  V + L  M
Sbjct: 240 ---RRTETNPNSV----TFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAM 292

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + +AR++FD M   D+V+W  MI  Y Q G  +E   LF E+I + ++P++ TF
Sbjct: 293 YAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITF 352

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +  L   ++ A    GK++H Y+ R G     F  SAL+ +Y KC +VE ++K+F+    
Sbjct: 353 SSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTP 412

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ- 382
            D+V  T++I+GY  NGM + ALE F  LL+   + + +    VL AC     +  G + 
Sbjct: 413 VDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKEL 472

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           + H +K  HG +      + I+D+ A+ GR   A      +  K D   W S++  C  +
Sbjct: 473 HGHILKNGHGGSCYVG--SAIMDMYAKCGRLDLAHQTFIGISDK-DAVCWNSMITSCSQN 529

Query: 443 G 443
           G
Sbjct: 530 G 530



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 189/401 (47%), Gaps = 35/401 (8%)

Query: 7   NQRRLKEALQI-LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           N   + + LQ  +H     +P + S ++Q C     L +G++ H+ +  +G      +  
Sbjct: 27  NSVNIGKPLQFSIHNDDSLAPQLVS-ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGT 85

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LL MY  CG   DA+ +F   Q R  CS                               
Sbjct: 86  KLLGMYVLCGAFLDAKNIF--YQLRLWCSE-----------------------------P 114

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W  MI G+    Q   AL  Y  M     ++ +K+T   V+ A   +  + LG+ +H  I
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGC-GTLPDKYTFPYVIKACGGLNSVALGRVVHDKI 173

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              GF+ D  V S+L   Y + G I++AR +FD+M  +D V W  M+  Y + G  +   
Sbjct: 174 QFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNAT 233

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F E+ ++   PN+ TFA VL+ CA       G Q+HG +   G +  S  A+ L+ MY
Sbjct: 234 GVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMY 293

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG++ +++++F+ MP+ DLV+W  +I+GY QNG  D+A   F  ++ +  +PD I F 
Sbjct: 294 AKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFS 353

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             L   +    + +G +  H    ++G++      + ++D+
Sbjct: 354 SFLPLLSEGATLRQG-KEIHCYIIRNGVSLDVFLKSALIDI 393



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 137/287 (47%), Gaps = 2/287 (0%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L S+L   +    L  G++ H  ++  G   + ++ + L  MY  CG+  +A+ IF ++ 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
                 W  MI  +   G+ +     + +++  G  P+ +TF  V+ AC    +  LG+ 
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH  +  +G++   F  S+L+  YS+ G + +++ +F+ MP  D V W  ++ GY +NG 
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            D A   F  + ++ T P+ + F  VL+ C    +++ G Q  H +    GL   +    
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ-LHGLVVSSGLEMDSPVAN 287

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            ++ + A+ G   +A  +   MP K D   W  ++ G   +G +D A
Sbjct: 288 TLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMISGYVQNGFMDEA 333



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 3/211 (1%)

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +L  C D +    G+Q H  M   G        + L+ MY  CG   ++K +F  +    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
              W  +I G+   G  D AL ++  +L  GT PD   F  V+ AC     V  G +  H
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALG-RVVH 170

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
              +  G        + ++   + +G  H+A  +  +MP K D  LW  +L G   +G+ 
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVMLNGYVKNGDW 229

Query: 446 DLAKRAAEALFEIEPE-NPATYVTMANIYAS 475
           D A      +   E   N  T+  + ++ AS
Sbjct: 230 DNATGVFMEMRRTETNPNSVTFACVLSVCAS 260


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/546 (32%), Positives = 290/546 (53%), Gaps = 76/546 (13%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L    R K+A  +  ++      P    + SL++ C    ALE+GKKVH+ +K  G+   
Sbjct: 287 LARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346

Query: 61  VFISNCLLDMYAKC-------------------------------GNISDAQTLFDEMQE 89
           +++   +L MY KC                               G I +A   F++M E
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 90  RDV-------------CS--------------------------YNTMISGFTKGGSLEQ 110
             +             CS                             ++S + K GSL+ 
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKD 466

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  +F+++ +++  +W AMI+ YV++ Q   AL  ++ +   E    N  T +S+L+   
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNVCK 525

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
           +   L LGK +H  IM+ G +SD  V +AL  M+  CG +  A+ +F+ M  RD+VSW  
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           +I  + Q G+ +  F  F  + +SGI+P+  TF G+LNACA   A   G+++H  +T   
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           +D      + L+ MY+KCG++E++ +VF+ +P+ ++ SWTS+I GYAQ+G   +ALE F 
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFY 705

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            + + G +PD I FVG L+AC HAGL+++GL +F S+KE   +    +HY C+VDL  R+
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRA 764

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G  +EA + I KM ++PD  +W +LLG C++H N++LA++AA+   E++P +   +V ++
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824

Query: 471 NIYASA 476
           NIYA+A
Sbjct: 825 NIYAAA 830



 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 263/476 (55%), Gaps = 47/476 (9%)

Query: 10  RLKEALQILHQISHPSPSIY----SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           +  EA+Q+L ++      IY    S+L+Q C + + L +G+++++H+K SG +P +F+  
Sbjct: 90  QFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFM-- 147

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
                                        +NT+I+ + K G+   A+ +FD+M ++D +S
Sbjct: 148 -----------------------------WNTLINMYAKCGNTISAKQIFDDMREKDVYS 178

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           W  ++ GYV++    EA  L+  M   ++SV  +K T  S+L+A +  + +  G+E++  
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQM--VQDSVKPDKRTFVSMLNACADARNVDKGRELYNL 236

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I++ G+D+D  V +AL +M+ KCG I +A ++FD +  RD+V+WT+MI    + GR ++ 
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF  + + G++P+   F  +L AC    A E GK+VH  M  +G+D   +  +A++ M
Sbjct: 297 CNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSM 356

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG++E++ +VF+ +   ++VSWT++IAG+AQ+G  D+A  +F  +++SG +P+ + F
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTF 416

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH--YACIVDLLARSGRFHEAEDVISK 422
           + +L AC+    + +G Q    I E     Y +D      ++ + A+ G   +A  V  K
Sbjct: 417 MSILGACSSPSALKRGQQIQDHIIEA---GYGSDDRVRTALLSMYAKCGSLKDAHRVFEK 473

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYASA 476
           +  K +   W +++     H   D A    +AL +  I+P N +T+ ++ N+  S+
Sbjct: 474 IS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSS 527



 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 242/462 (52%), Gaps = 37/462 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q++     P    + S++  C   R +++G+++++ +  +G+   +F+   L++M+ KCG
Sbjct: 201 QMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCG 260

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           +I DA                                 +FD +P RD  +WT+MI+G  R
Sbjct: 261 DIGDAT-------------------------------KVFDNLPTRDLVTWTSMITGLAR 289

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           + +  +A +L++ M+  E    +K    S+L A +  + L  GK++H  +   G+D++  
Sbjct: 290 HGRFKQACNLFQRMEE-EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +A+  MY KCGS+ +A ++FD +  R+VVSWTAMI  + Q GR +E F  F+++I+SG
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           I PN  TF  +L AC+  +A + G+Q+  ++   GY       +AL+ MY+KCG+++++ 
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           +VF  + + ++V+W ++I  Y Q+   D AL  F+ LLK G +P+   F  +L  C  + 
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            ++ G ++ H +  K GL         +V +    G    A+++ + MP K D   W ++
Sbjct: 529 SLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTI 586

Query: 436 LGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
           + G   HG   +A    + + E  I+P+   T+  + N  AS
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDK-ITFTGLLNACAS 627



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 153/346 (44%), Gaps = 79/346 (22%)

Query: 198 SALSDMYGKCGSINEARQIFDKM------------------------------------- 220
           +A+ +   K G  NEA Q+ +++                                     
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 221 --VDRDVVSWTAMIGRY-------------------------------FQEGRREEGFAL 247
             V  D+  W  +I  Y                                Q G  EE F L
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
             ++++  ++P+  TF  +LNACAD    + G++++  + + G+D   F  +AL++M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG++ ++ KVF+ +P  DLV+WTS+I G A++G   +A   F+ + + G QPD + FV +
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPM 425
           L AC H   +++G +    +KE   + +  + Y    I+ +  + G   +A +V   +  
Sbjct: 319 LRACNHPEALEQGKKVHARMKE---VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTM 469
           + +   W +++ G   HG +D A      + E  IEP N  T++++
Sbjct: 376 R-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP-NRVTFMSI 419



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 4/244 (1%)

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           +D     A++ R  + G+  E   +   +  S I+    T++ +L  C        G+++
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           + ++ + G  P  F  + L++MY+KCGN  ++K++F+ M   D+ SW  L+ GY Q+G+ 
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           ++A +  E +++   +PD   FV +L AC  A  VDKG + ++ I  K G          
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL-KAGWDTDLFVGTA 251

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEP 460
           ++++  + G   +A  V   +P + D   W S++ G   HG    A    + + E  ++P
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 461 ENPA 464
           +  A
Sbjct: 311 DKVA 314


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 270/448 (60%), Gaps = 17/448 (3%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK++H    +S     +F+ NCL+DMYAKCG + +A T+F  M  +DV S+N M++G+++
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQ 307

Query: 105 GGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
            G  E A  LF++M +     D  +W+A ISGY +     EAL + R M +      N+ 
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS-SGIKPNEV 366

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGY-------IMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           TL SVLS  +++  L  GKEIH Y       + + G   + +V + L DMY KC  ++ A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTA 426

Query: 214 RQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNAFTFAGVLNA 269
           R +FD +   +RDVV+WT MIG Y Q G   +   L SE+ +     RPNAFT +  L A
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVA 486

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           CA  AA  +GKQ+H Y  R   +    F ++ L+ MY+KCG++ +++ VF+ M   + V+
Sbjct: 487 CASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT 546

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WTSL+ GY  +G  ++AL  F+ + + G + D +  + VL AC+H+G++D+G++YF+ +K
Sbjct: 547 WTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMK 606

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
              G++   +HYAC+VDLL R+GR + A  +I +MPM+P   +W + L  CRIHG ++L 
Sbjct: 607 TVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELG 666

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           + AAE + E+   +  +Y  ++N+YA+A
Sbjct: 667 EYAAEKITELASNHDGSYTLLSNLYANA 694



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 222/477 (46%), Gaps = 85/477 (17%)

Query: 17  ILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++H +S  P    +  + + C +  ++  G+  H+    +GF   VF+ N L+ MY++C 
Sbjct: 117 LMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCR 176

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           ++SDA+ +FDEM   DV S+N++I  + K G                             
Sbjct: 177 SLSDARKVFDEMSVWDVVSWNSIIESYAKLG----------------------------- 207

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
             +P  AL+++  M N      +  TL +VL   +++    LGK++H + + +    +  
Sbjct: 208 --KPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF 265

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS------ 249
           V + L DMY KCG ++EA  +F  M  +DVVSW AM+  Y Q GR E+   LF       
Sbjct: 266 VGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEK 325

Query: 250 -----------------------------ELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
                                        +++ SGI+PN  T   VL+ CA   A   GK
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385

Query: 281 QVHGY-------MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRP-DLVSWTS 331
           ++H Y       + + G+   +   + L+ MY+KC  V+ ++ +F+ + P+  D+V+WT 
Sbjct: 386 EIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTV 445

Query: 332 LIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIK 388
           +I GY+Q+G  +KALE    + +    T+P+       L AC     +  G Q + ++++
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR 505

Query: 389 EKHGLT--YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +      + ++   C++D+ A+ G   +A  V   M M  ++  W SL+ G  +HG
Sbjct: 506 NQQNAVPLFVSN---CLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHG 558



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 196/442 (44%), Gaps = 54/442 (12%)

Query: 73  KCGNISDAQTLFDEMQERDVCSYNT---MISGFTKGGSLEQARNLFDEMPQRDN--FSWT 127
           KC  IS  + +  ++    + + N    +IS +   G L  A +L    P  D   + W 
Sbjct: 37  KCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWN 96

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           ++I  Y       + L L+ +M +   +  N +T   V  A   I  +R G+  H   + 
Sbjct: 97  SLIRSYGDNGCANKCLYLFGLMHSLSWTPDN-YTFPFVFKACGEISSVRCGESAHALSLV 155

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           TGF S+  V +AL  MY +C S+++AR++FD+M   DVVSW ++I  Y + G+ +    +
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEM 215

Query: 248 FSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           FS +    G RP+  T   VL  CA      LGKQ+H +          F  + LV MY+
Sbjct: 216 FSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYA 275

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE---------------- 350
           KCG ++ +  VF+ M   D+VSW +++AGY+Q G  + A+  FE                
Sbjct: 276 KCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSA 335

Query: 351 -------------------LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
                               +L SG +P+ +  + VL+ C   G +  G +  H    K+
Sbjct: 336 AISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKY 394

Query: 392 GLTYTADHYA-------CIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHG 443
            +    + +         ++D+ A+  +   A  +   + P + D   W  ++GG   HG
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454

Query: 444 NLDLAKRAAEALFEIEPENPAT 465
           +   A +A E L E+  E+  T
Sbjct: 455 D---ANKALELLSEMFEEDCQT 473


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 264/449 (58%), Gaps = 35/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y + I  C + RAL EG++VH+ + ++ ++P VF+   L+ MY +CG             
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG------------- 59

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                             +L+ ARN+ D MP+R   SWT MISGY +  + +EALDL+  
Sbjct: 60  ------------------ALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 101

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M      + N++TL++VL++ S  Q +  GK++H  +++T F+S   V S+L DMY K  
Sbjct: 102 MLR-AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSE 160

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +I EAR++FD + +RDVVS TA+I  Y Q+G  EE   LF +L   G++ N  TF  ++ 
Sbjct: 161 NIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 220

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A +  A+ + GKQVH  + R     +    ++L+ MYSKCG +  S++VF+ M    +VS
Sbjct: 221 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS-I 387
           W +++ GY ++G+  + +  F+ L K   +PD +  + VL+ C+H GLVD+GL  F + +
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVV 339

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           KE+  L +T  HY CI+DLL RSGR  +A ++I  MP +    +W SLLG CR+H N+ +
Sbjct: 340 KEQSALLHTG-HYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHV 398

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            +  A+ L E+EPEN   YV ++NIYA+A
Sbjct: 399 GELVAQKLLEMEPENAGNYVILSNIYAAA 427



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 57/325 (17%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++++  C   +++ +GK+VHS L  + F+  +F+ + LLDMYAK  NI +A+ +
Sbjct: 109 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 168

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD + ERDV S   +ISG+ + G         DE                       EAL
Sbjct: 169 FDTLPERDVVSCTAIISGYAQKG--------LDE-----------------------EAL 197

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+R + + E    N  T +++++A+S +  L  GK++H  I+R        + ++L DM
Sbjct: 198 DLFRQLYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  +R++FD M++R VVSW AM+  Y + G   E  +LF +L K  ++P++ T 
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTL 315

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA---SALVH---------MYSKCGNV 311
             VL+ C+           HG +   G D +       SAL+H         +  + G +
Sbjct: 316 LAVLSGCS-----------HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRL 364

Query: 312 ENSKKVFNGMPRPDLVS-WTSLIAG 335
           E +  +   MP     S W SL+  
Sbjct: 365 EKALNLIENMPFESTPSIWGSLLGA 389


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 174/504 (34%), Positives = 290/504 (57%), Gaps = 37/504 (7%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N   LK   ++L     P+   ++S+++ C +      G  +   +  +GF+  + +SN 
Sbjct: 165 NFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNS 224

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ +  + G I  A+ +FD M++RDV S+  ++  + + G L +AR +FDEMP+R+  SW
Sbjct: 225 LITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISW 284

Query: 127 TAMISGYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +AMI+ Y +     EAL L+  M  + F+ ++S     +  LSA+++++ L  G  IHG+
Sbjct: 285 SAMIARYSQSGYAEEALKLFSKMVQEGFKPNIS---CFACTLSALASLRALSAGINIHGH 341

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR--- 241
           + + G D D  + S+L D+Y KCG  ++ R +FD +++++VV W +M+G Y   GR    
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401

Query: 242 ----------------------------EEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
                                       E+   +F+ L+ SG  PN  TF+ VL ACA  
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           A+ + G  VHG + ++G     F  +AL  MY+KCG++ +SK+VF  MP  + +SWT +I
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMI 521

Query: 334 AGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
            G A++G   ++L  FE + + S   P+ ++ + VL AC+H GLVDKGL YF+S+++ +G
Sbjct: 522 QGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYG 581

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +     HY C+VDLL+RSGR +EAE+ I  +P +P+   WA+LL GC+ + +  +A+R A
Sbjct: 582 IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTA 641

Query: 453 EALFEIEPENPATYVTMANIYASA 476
           + L+++   N A YV ++NIYASA
Sbjct: 642 KKLWQLAENNSAGYVLLSNIYASA 665



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 219/441 (49%), Gaps = 67/441 (15%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + +SNC++  Y + GN+  A+ LFDEM ER+  S++ +ISG  K G +E++   F+  P 
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPF 146

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           ++  SWTA ISG+VR     EAL L+ R++++      N  T +SV+ A   +    LG 
Sbjct: 147 QNVVSWTAAISGFVRNGLNFEALKLFFRLLES--GVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 180 EIHGYIMRTGFD-------------------------------SDEVVWSALSDMYGKCG 208
            I G +++ GF+                                D V W+A+ D Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + EAR+IFD+M +R+ +SW+AMI RY Q G  EE   LFS++++ G +PN   FA  L+
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF---------- 318
           A A   A   G  +HG++T+IG D   F  S+L+ +Y KCG  ++ + VF          
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVC 384

Query: 319 ----------NG-----------MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
                     NG           +P  + VSW ++IAGY +N   +K LE F  LL SG 
Sbjct: 385 WNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQ 444

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+   F  VL AC     +DKG+   H    K G+ Y       + D+ A+ G    ++
Sbjct: 445 TPNKSTFSSVLCACASIASLDKGMN-VHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSK 503

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            V  +MP K ++  W  ++ G
Sbjct: 504 QVFERMPEK-NEISWTVMIQG 523



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 182/445 (40%), Gaps = 105/445 (23%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S L +F  Q   + +G  +H+HL  +GF    +I+  LL +Y  C   ++   +  E   
Sbjct: 26  SLLKKFSNQG-LITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDG 84

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
            D+   N                                MIS YV++   ++A  L+  M
Sbjct: 85  SDLVVSN-------------------------------CMISAYVQWGNLVQARLLFDEM 113

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                                                    + +EV WSAL     K G 
Sbjct: 114 P----------------------------------------ERNEVSWSALISGLMKYGR 133

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + E+   F++   ++VVSWTA I  + + G   E   LF  L++SG+RPN  TF  V+ A
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM------------------------- 304
           C +     LG  + G + + G++ Y   +++L+ +                         
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253

Query: 305 ------YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
                 Y + G++  ++++F+ MP  + +SW+++IA Y+Q+G  ++AL+ F  +++ G +
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK 313

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+   F   L+A      +  G+   H    K G+       + ++DL  + G+  +   
Sbjct: 314 PNISCFACTLSALASLRALSAGIN-IHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR- 371

Query: 419 VISKMPMKPDKFLWASLLGGCRIHG 443
           ++  + ++ +   W S++GG  I+G
Sbjct: 372 LVFDLILEKNVVCWNSMVGGYSING 396



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 106/287 (36%), Gaps = 69/287 (24%)

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC---- 308
           K   R  A T   +L   ++      G  +H ++ + G+    + A  L+ +Y  C    
Sbjct: 14  KKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFA 73

Query: 309 ---------------------------GNVENSKKVFNGMPR------------------ 323
                                      GN+  ++ +F+ MP                   
Sbjct: 74  EIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGR 133

Query: 324 -------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
                         ++VSWT+ I+G+ +NG+  +AL+ F  LL+SG +P+ + F  V+ A
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C   G    G+     +  K G  +       ++ L  R G    A  V  +M  K D  
Sbjct: 194 CGELGDFGLGMSIL-GLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-KRDVV 251

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYASA 476
            W ++L      G+L    R A  +F+  PE N  ++  M   Y+ +
Sbjct: 252 SWTAILDAYVETGDL----REARRIFDEMPERNEISWSAMIARYSQS 294


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  330 bits (846), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 168/512 (32%), Positives = 285/512 (55%), Gaps = 48/512 (9%)

Query: 11  LKEALQILHQISHPS----PSIYSSLIQFCRQN--------RALEEGKKVHSHLKSSGFK 58
           + +AL++  ++S  +    P   SS++  C Q         RA+   + +H+ +   GF 
Sbjct: 224 VDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFD 283

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA------- 111
               + N L+DMYAK   + +A  +F+ M    + S+N +++G+ + G  E+A       
Sbjct: 284 SDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLM 343

Query: 112 ----------------------------RNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                       R +FD++ +    +W  ++SGY +     + +
Sbjct: 344 QESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTI 403

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+R MQ+ +N   ++ TL+ +LS  S +  L LGK++H   ++    +D  V S L DM
Sbjct: 404 ELFRRMQH-QNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDM 462

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A+ IF+ M +RDVV W +MI         EE F  F ++ ++G+ P   ++
Sbjct: 463 YSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSY 522

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A ++N+CA  ++   G+Q+H  + + GYD   +  S+L+ MY+KCGN+++++  FN M  
Sbjct: 523 ASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIV 582

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++V+W  +I GYAQNG  +KA+E FE +L +  +PD + F+ VLT C+H+GLVD+ + Y
Sbjct: 583 KNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAY 642

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+S++  +G+    +HY C++D L R+GRF E   VI KMP K D  LW  LL  C +H 
Sbjct: 643 FNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVHH 702

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N +L + AA+ LF ++P+NP+ YV ++NIYA+
Sbjct: 703 NAELGEFAAKHLFRLDPKNPSPYVLLSNIYAT 734



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 208/423 (49%), Gaps = 23/423 (5%)

Query: 54  SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           ++G     F+ N L+++Y+  G    A   F  +   +V SYN  IS   + G L  AR+
Sbjct: 38  AAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARD 97

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           L   MP R+  SW  +I+   R + P EAL++YR M   E      FTL+SVLSA  A+ 
Sbjct: 98  LLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQ-EGLAPTNFTLASVLSACGAVA 156

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            L  G+  HG  ++ G D ++ V + L  MY KCGS+ +A ++FD M   + VS+TAM+G
Sbjct: 157 ALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMG 216

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE--------LGKQVHGY 285
              Q G  ++   LF+ + +S IR +    + VL ACA   A +        L + +H  
Sbjct: 217 GLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHAL 276

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + R G+D      ++L+ MY+K   ++ + KVF  M    +VSW  L+ GY Q G  ++A
Sbjct: 277 VVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERA 336

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           LE  +L+ +SG +P+ + +  +L +C  A  V      F  I +    T+          
Sbjct: 337 LEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNT-------- 388

Query: 406 LLARSGRFHEAEDVI------SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
           LL+  G+    +D I          ++PD+   A +L  C   G L+L K+   A  ++ 
Sbjct: 389 LLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLL 448

Query: 460 PEN 462
             N
Sbjct: 449 LHN 451



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 194/434 (44%), Gaps = 65/434 (14%)

Query: 13  EALQI----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL++    L +   P+    +S++  C    AL++G++ H      G     F+ N LL
Sbjct: 125 EALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLL 184

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY KCG+++DA  LFD M   +  S+  M+ G  + G+++ A  LF  M          
Sbjct: 185 GMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMS--------- 235

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                 R    ++ + +  ++     + +  + ++         + +RL + IH  ++R 
Sbjct: 236 ------RSAIRVDPVAVSSVLGACAQACAGDYNVA---------RAIRLAQSIHALVVRK 280

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GFDSD+ V ++L DMY K   ++EA ++F+ M    +VSW  ++  Y Q G  E    + 
Sbjct: 281 GFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVL 340

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             + +SG  PN  T++ +L +C                                    K 
Sbjct: 341 DLMQESGFEPNEVTYSNMLASCI-----------------------------------KA 365

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
            +V +++ +F+ + +P + +W +L++GY Q  +    +E F  +     QPD      +L
Sbjct: 366 RDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVIL 425

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           + C+  G+++ G Q  HS   K  L       + ++D+ ++ G+   A+ +I  M  + D
Sbjct: 426 STCSRLGILELGKQ-VHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQ-IIFNMMTERD 483

Query: 429 KFLWASLLGGCRIH 442
              W S++ G  IH
Sbjct: 484 VVCWNSMISGLAIH 497



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 12/278 (4%)

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G +  AR +  +M DR+ VSW  +I    +     E   ++  +++ G+ P  FT A 
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLAS 147

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL+AC   AA + G++ HG   ++G D   F  + L+ MY+KCG+V ++ ++F+ M  P+
Sbjct: 148 VLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPN 207

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL---- 381
            VS+T+++ G AQ+G  D AL  F  + +S  + D +    VL AC  A   D  +    
Sbjct: 208 EVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAI 267

Query: 382 ---QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              Q  H++  + G          ++D+ A+  +  EA  V   M        W  L+ G
Sbjct: 268 RLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMS-SVSIVSWNILVTG 326

Query: 439 CRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
              +G L   +RA E L  ++        VT +N+ AS
Sbjct: 327 ---YGQLGCYERALEVLDLMQESGFEPNEVTYSNMLAS 361


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/448 (36%), Positives = 259/448 (57%), Gaps = 34/448 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS ++ C  + AL  G+++H      GF    F++N L  MY KCG             
Sbjct: 172 FSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGK------------ 219

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                              L+    LF+ M QRD  SWT +I   V+  Q   A+  +R 
Sbjct: 220 -------------------LDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRR 260

Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M+  E  VS N+FT ++V+S  + +  +  G+++H +++R G      V +++  MY KC
Sbjct: 261 MR--ETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKC 318

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
             ++ A  +F  +  RD++SW+ MI  Y Q G  EE F   S + + G RPN F FA VL
Sbjct: 319 WQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVL 378

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           + C + A  E GKQ+H ++  +G +  +   SAL++MYSKCG+++ + K+F+     ++V
Sbjct: 379 SVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIV 438

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SWT++I GYA++G   +A++ F+ L K G +PD + F+ VL AC+HAGLVD G  YF+S+
Sbjct: 439 SWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSL 498

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            + H +  + DHY C++DLL R+GR ++AE +I  MP + D  +W++LL  CRIHG++D 
Sbjct: 499 SKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDC 558

Query: 448 AKRAAEALFEIEPENPATYVTMANIYAS 475
            KRAAE + +++P    T++T+AN+YA+
Sbjct: 559 GKRAAEKILQLDPNCAVTHITLANMYAA 586



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 225/475 (47%), Gaps = 65/475 (13%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           H  P I S  ++ C  N ++  G+ +H +   + F   VF+ + L+DMY K G + +   
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F E                               MP R+  SWTA+I+G VR     EA
Sbjct: 125 VFKE-------------------------------MPLRNVVSWTAIIAGLVRAGYNKEA 153

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L  +  M   +    + +T SS L A +    L  G+EIH   ++ GF +   V + L+ 
Sbjct: 154 LAYFSDMW-IQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLAT 212

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG ++   ++F+ M  RDVVSWT +I    Q G+ E     F  + ++ + PN FT
Sbjct: 213 MYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFT 272

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           FA V++ CA     E G+Q+H ++ R G       A++++ MYSKC  ++ +  VF G+ 
Sbjct: 273 FAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLS 332

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D++SW+++I+GYAQ G  ++A +Y   + + G +P+   F  VL+ C +  ++++G Q
Sbjct: 333 RRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQ 392

Query: 383 -YFH------------------------SIKEKHGLTYTADH-----YACIVDLLARSGR 412
            + H                        SIKE   +   A++     +  +++  A  G 
Sbjct: 393 LHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGY 452

Query: 413 FHEAEDVISKMP---MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
             EA D+  K+P   ++PD   + ++L  C   G +DL      +L ++    P+
Sbjct: 453 SQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPS 507



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 176/343 (51%), Gaps = 2/343 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N ++    K G L  AR LFD+M QRD  SWT +ISGYV      EAL L+  M      
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             + F LS  L A      +  G+ +HGY ++T F +   V SAL DMY K G ++E   
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F +M  R+VVSWTA+I    + G  +E  A FS++    +  + +TF+  L ACAD  A
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGA 184

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              G+++H    + G+   SF A+ L  MY+KCG ++   ++F  M + D+VSWT++I  
Sbjct: 185 LNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMS 244

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
             Q G  + A++ F  + ++   P+   F  V++ C   G ++ G Q  H+   + GL  
Sbjct: 245 NVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQ-LHAHVIRRGLVD 303

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +      I+ + ++  +   A  V   +  + D   W++++ G
Sbjct: 304 SLSVANSIMAMYSKCWQLDLASTVFQGLS-RRDIISWSTMISG 345



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 121/245 (49%), Gaps = 25/245 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++S++  C     LE+GK++H+H+   G +    + + L++MY+KCG+I +A  +
Sbjct: 369 PNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKI 428

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQP 139
           FDE +  ++ S+  MI+G+ + G  ++A +LF ++P+     D+ ++ A+++        
Sbjct: 429 FDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAA------- 481

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-----RLGK--EIHGYIMRTGFDS 192
                L  +  ++ NS+S    +  +  +     C+     R G+  +    I    F  
Sbjct: 482 CSHAGLVDLGFHYFNSLSK---VHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQR 538

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRD---VVSWTAMIGRYFQEGRREEGFALFS 249
           D+VVWS L       G ++  ++  +K++  D    V+   +   Y  +G+ +E  A   
Sbjct: 539 DDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEA-AEVR 597

Query: 250 ELIKS 254
           +++KS
Sbjct: 598 KMMKS 602


>gi|302801784|ref|XP_002982648.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
 gi|300149747|gb|EFJ16401.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
          Length = 481

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/483 (32%), Positives = 269/483 (55%), Gaps = 42/483 (8%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L++ CR  +ALEEG++VH  ++ +GF+   F+ N L++MYAKCG+  DA+  F++++ ++
Sbjct: 1   LVRRCRDRQALEEGRRVHEQIRKNGFEGETFLGNLLVEMYAKCGSWEDARQAFEKIEHKN 60

Query: 92  VCSYNT--------MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
             S+ T        +++ + K G+L +A  +FD +  R+  +W  ++  Y +Y  P E L
Sbjct: 61  AFSFGTNQPVLGTAIVTMYGKSGNLVEASQVFDRLSSRNIITWNTLMGAYAQYGHPDEVL 120

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L + M+  E    N+ T  S+L A S ++ L  G+ +H  I  TG+  D V+ SA+ +M
Sbjct: 121 RLQKRME-LEGVKQNRVTYLSLLDACSELESLTDGQALHARITATGYVGDAVLDSAVVNM 179

Query: 204 YGKCGSINEAR--------------------------------QIFDKMVDRDVVSWTAM 231
           Y KC S+  AR                                ++FD+M  R VV+W  +
Sbjct: 180 YTKCKSLERARRVFDRMQLKTEVTWTTLISAYAQQGQDLENAREVFDRMTTRTVVTWNTL 239

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +  Y Q G  EE   L+  +   G+ P+  T+  ++ AC D  +   G+ VH  + R G 
Sbjct: 240 LTAYGQHGHSEEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGL 299

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           +  +  ++ALV MY KCG+++ ++K+F+G    +LVSW ++I  YAQNG   + LE +EL
Sbjct: 300 ENGALVSTALVSMYGKCGSLDEARKIFDGSDLSNLVSWNAMIVAYAQNGEGKQGLELYEL 359

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +   G +P+ + + GVL AC HAGL+D+  + F S+K   G+ +  +H++C+ D+L R G
Sbjct: 360 MNLGGVEPNGVTYTGVLFACAHAGLLDEAWKQFVSLKTDRGIEWEDEHFSCMTDMLGRLG 419

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
           R  EAE+ + + P +     W SLL  C++HG+L+  KR ++   +  PE  ++YV ++N
Sbjct: 420 RLEEAEEFLKRFP-QAGGVPWLSLLNSCQMHGDLERGKRVSQEAMKRNPETSSSYVMLSN 478

Query: 472 IYA 474
           IYA
Sbjct: 479 IYA 481



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 169/308 (54%), Gaps = 5/308 (1%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y SL+  C +  +L +G+ +H+ + ++G+     + + +++MY KC ++  A+ +FD MQ
Sbjct: 138 YLSLLDACSELESLTDGQALHARITATGYVGDAVLDSAVVNMYTKCKSLERARRVFDRMQ 197

Query: 89  ERDVCSYNTMISGFTKGGS-LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            +   ++ T+IS + + G  LE AR +FD M  R   +W  +++ Y ++    EA+ LY+
Sbjct: 198 LKTEVTWTTLISAYAQQGQDLENAREVFDRMTTRTVVTWNTLLTAYGQHGHSEEAIRLYQ 257

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M+  +    ++ T  +++ A   +Q L  G+ +H  I+R G ++  +V +AL  MYGKC
Sbjct: 258 RMEP-DGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGLENGALVSTALVSMYGKC 316

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           GS++EAR+IFD     ++VSW AMI  Y Q G  ++G  L+  +   G+ PN  T+ GVL
Sbjct: 317 GSLDEARKIFDGSDLSNLVSWNAMIVAYAQNGEGKQGLELYELMNLGGVEPNGVTYTGVL 376

Query: 268 NACADHAA--EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
            ACA HA   +E  KQ     T  G +      S +  M  + G +E +++     P+  
Sbjct: 377 FACA-HAGLLDEAWKQFVSLKTDRGIEWEDEHFSCMTDMLGRLGRLEEAEEFLKRFPQAG 435

Query: 326 LVSWTSLI 333
            V W SL+
Sbjct: 436 GVPWLSLL 443



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 37/247 (14%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA+++  ++      P    Y +++  C   ++L EG+ VH  +  +G + G  +S  L
Sbjct: 250 EEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGLENGALVSTAL 309

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY KCG++ +A+ +FD     ++ S+N MI  + + G  +Q                 
Sbjct: 310 VSMYGKCGSLDEARKIFDGSDLSNLVSWNAMIVAYAQNGEGKQ----------------- 352

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-RLGKEIHGYIM 186
                          L+LY +M N      N  T + VL A +    L    K+      
Sbjct: 353 --------------GLELYELM-NLGGVEPNGVTYTGVLFACAHAGLLDEAWKQFVSLKT 397

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G + ++  +S ++DM G+ G + EA +   +      V W +++      G  E G  
Sbjct: 398 DRGIEWEDEHFSCMTDMLGRLGRLEEAEEFLKRFPQAGGVPWLSLLNSCQMHGDLERGKR 457

Query: 247 LFSELIK 253
           +  E +K
Sbjct: 458 VSQEAMK 464


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 264/449 (58%), Gaps = 35/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y + I  C + RAL EG++VH+ + ++ ++P VF+   L+ MY +CG             
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG------------- 59

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                             +L+ ARN+ D MP+R   SWT MISGY +  + +EALDL+  
Sbjct: 60  ------------------ALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 101

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M      + N++TL++VL++ S  Q +  GK++H  +++T F+S   V S+L DMY K  
Sbjct: 102 MLR-AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSE 160

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +I EAR++FD + +RDVVS TA+I  Y Q+G  EE   LF +L   G++ N  TF  ++ 
Sbjct: 161 NIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 220

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A +  A+ + GKQVH  + R     +    ++L+ MYSKCG +  S++VF+ M    +VS
Sbjct: 221 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS-I 387
           W +++ GY ++G+  + +  F+ L K   +PD +  + VL+ C+H GLVD+GL  F + +
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVV 339

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           KE+  L +T  HY CI+DLL RSGR  +A ++I  MP +    +W SLLG CR+H N+ +
Sbjct: 340 KEQSALLHTG-HYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHV 398

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            +  A+ L E+EPEN   YV ++NIYA+A
Sbjct: 399 GELVAQKLLEMEPENAGNYVILSNIYAAA 427



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 57/325 (17%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++++  C   +++ +GK+VHS L  + F+  +F+ + LLDMYAK  NI +A+ +
Sbjct: 109 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 168

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD + ERDV S   +ISG+ + G         DE                       EAL
Sbjct: 169 FDTLPERDVVSCTAIISGYAQKG--------LDE-----------------------EAL 197

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+R + + E    N  T +++++A+S +  L  GK++H  I+R        + ++L DM
Sbjct: 198 DLFRQLYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  +R++FD M++R VVSW AM+  Y + G   E  +LF +L K  ++P++ T 
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTL 315

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA---SALVH---------MYSKCGNV 311
             VL+ C+           HG +   G D +       SAL+H         +  + G +
Sbjct: 316 LAVLSGCS-----------HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRL 364

Query: 312 ENSKKVFNGMPRPDLVS-WTSLIAG 335
           E +  +   MP     S W SL+  
Sbjct: 365 EKALNLIENMPFESTPSIWGSLLGA 389


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 258/441 (58%), Gaps = 36/441 (8%)

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS---------------------- 107
           MY KC  + +A  +F+ +    + S+N +I+GF + GS                      
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 108 -------------LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
                        +  AR +FD++ +    +W  ++SGY +  Q  + ++L+R MQ+ +N
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQH-QN 119

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
              ++ TL+ +LS+ S +  L  G+++H   +R    +D  V S L DMY KCG I  AR
Sbjct: 120 VQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIAR 179

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            IF+KM +RDVV W ++I         +E F  F ++ ++GI P   ++A ++N+C+  +
Sbjct: 180 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLS 239

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           +   G+Q+H  + + GYD   +  SAL+ MY+KCGN+++++  F+ M   ++V+W  +I 
Sbjct: 240 SIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIH 299

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GYAQNG+ DKA+E FE +L +  +PD + F+ VLT C+H+GLVDK + +F+S++  +G+ 
Sbjct: 300 GYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGII 359

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
             A+HY C++D L R+GRF E E +I KMP K D  +W  LL  C +H N +L K AAE 
Sbjct: 360 PLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEH 419

Query: 455 LFEIEPENPATYVTMANIYAS 475
           LF I+P+NP+ YV ++NIYAS
Sbjct: 420 LFRIDPKNPSPYVLLSNIYAS 440



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 167/337 (49%), Gaps = 40/337 (11%)

Query: 6   CNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           C + + ++ +++  ++ H    P  +  + ++  C +   L+ G++VHS          +
Sbjct: 100 CQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDM 159

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+++ L+DMY+KCG I  A+++F++M ERDV  +N++ISG T   SL +           
Sbjct: 160 FVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTI-HSLNK----------- 207

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKE 180
                              EA D ++ M+  EN +   + + +S++++ S +  +  G++
Sbjct: 208 -------------------EAFDFFKQMR--ENGIMPTESSYASMINSCSRLSSIPHGRQ 246

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH  +M+ G+D +  V SAL DMY KCG++++AR  FD M+ +++V+W  MI  Y Q G 
Sbjct: 247 IHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGL 306

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAAS 299
            ++   LF  ++ +  +P+A TF  VL  C+     +        M    G  P +   +
Sbjct: 307 GDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYT 366

Query: 300 ALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            L+    + G     + + + MP + D + W  L+A 
Sbjct: 367 CLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAA 403


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 264/449 (58%), Gaps = 35/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y + I  C + RAL EG++VH+ + ++ ++P VF+   L+ MY +CG             
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG------------- 91

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                             +L+ ARN+ D MP+R   SWT MISGY +  + +EALDL+  
Sbjct: 92  ------------------ALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 133

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M      + N++TL++VL++ S  Q +  GK++H  +++T F+S   V S+L DMY K  
Sbjct: 134 MLR-AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSE 192

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +I EAR++FD + +RDVVS TA+I  Y Q+G  EE   LF +L   G++ N  TF  ++ 
Sbjct: 193 NIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 252

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A +  A+ + GKQVH  + R     +    ++L+ MYSKCG +  S++VF+ M    +VS
Sbjct: 253 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 312

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS-I 387
           W +++ GY ++G+  + +  F+ L K   +PD +  + VL+ C+H GLVD+GL  F + +
Sbjct: 313 WNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVV 371

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           KE+  L +T  HY CI+DLL RSGR  +A ++I  MP +    +W SLLG CR+H N+ +
Sbjct: 372 KEQSALLHTG-HYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHV 430

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            +  A+ L E+EPEN   YV ++NIYA+A
Sbjct: 431 GELVAQKLLEMEPENAGNYVILSNIYAAA 459



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 57/325 (17%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++++  C   +++ +GK+VHS L  + F+  +F+ + LLDMYAK  NI +A+ +
Sbjct: 141 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 200

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD + ERDV S   +ISG+ + G         DE                       EAL
Sbjct: 201 FDTLPERDVVSCTAIISGYAQKG--------LDE-----------------------EAL 229

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+R + + E    N  T +++++A+S +  L  GK++H  I+R        + ++L DM
Sbjct: 230 DLFRQLYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 288

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  +R++FD M++R VVSW AM+  Y + G   E  +LF +L K  ++P++ T 
Sbjct: 289 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTL 347

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA---SALVH---------MYSKCGNV 311
             VL+ C+           HG +   G D +       SAL+H         +  + G +
Sbjct: 348 LAVLSGCS-----------HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRL 396

Query: 312 ENSKKVFNGMPRPDLVS-WTSLIAG 335
           E +  +   MP     S W SL+  
Sbjct: 397 EKALNLIENMPFESTPSIWGSLLGA 421


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 180/477 (37%), Positives = 272/477 (57%), Gaps = 44/477 (9%)

Query: 5   LCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
            C+Q  L  A++ +  +           YS LI+ C    A++EGK+VH H+   G++P 
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPK 89

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+ N LL+MY K                     +N           LE+A +LFDEMP+
Sbjct: 90  MFVVNTLLNMYVK---------------------FNL----------LEEAEDLFDEMPE 118

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGK 179
           R+  SWT MIS Y   +  +    L  ++  F   V  N FT SSVL A   +  LR   
Sbjct: 119 RNVVSWTTMISAY---SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR--- 172

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           ++H  I++TG +SD  V SAL D+Y K   ++ A  +FD+M  RD+V W ++IG + Q  
Sbjct: 173 QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNS 232

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              E   LF  + ++G   +  T   VL AC   A  ELG+QVH ++ +  +D      +
Sbjct: 233 DGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNN 290

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ MY KCG++E++   F+ M   D++SW++++AG AQNG   +ALE FE + +SG++P
Sbjct: 291 ALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRP 350

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           ++I  +GVL AC+HAGLV+KG  YF S+K+  G+    +HY C++DLL R+GR  EA  +
Sbjct: 351 NYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKL 410

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           I +M  +PD   W +LLG CR+H N+DLA  AA+ + E+EPE+  TY+ ++NIYA+ 
Sbjct: 411 IHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANT 467


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 269/452 (59%), Gaps = 42/452 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + +++  C    A   G++VH  +  SGF   V++ + L+DMYAKCG+            
Sbjct: 268 FPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGD------------ 315

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                              L+ A+N+ + M   D  SW +++ G+VR+    EAL L++ 
Sbjct: 316 -------------------LKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKN 356

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLG----KEIHGYIMRTGFDSDEVVWSALSDMY 204
           M    N   + +T  SVL+      C  +G    K +HG I++TGF++ ++V +AL DMY
Sbjct: 357 MHG-RNMKIDDYTFPSVLN------CCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMY 409

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G ++ A  +F+KM+++DV+SWT+++  Y Q    EE   +F ++  +G+ P+ F  A
Sbjct: 410 AKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVA 469

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            +L+ACA+    E GKQVH    + G        ++LV MY+KCG ++++  +F  M   
Sbjct: 470 SILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK 529

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+++WT++I GYAQNG    +L++++ ++ SGT+PD I F+G+L AC+HAGLVD+G +YF
Sbjct: 530 DVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYF 589

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             + + +G+    +HYAC++DL  RSG+  EA+ ++ +M +KPD  +W SLL  CR+H N
Sbjct: 590 QQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHEN 649

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           L+LA+RAA  LFE+EP N   YV ++N+Y+++
Sbjct: 650 LELAERAATNLFELEPMNAMPYVMLSNMYSAS 681



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 218/390 (55%), Gaps = 7/390 (1%)

Query: 51  HLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQ 110
           H  ++     ++ +N LL+  +K G ++DA+ LFD+M ++D  S+NTMIS +   G L +
Sbjct: 55  HTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVE 114

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           AR LFD    + + +W+++ISGY ++   +EA DL+R M+  E   +++FTL SVL   S
Sbjct: 115 ARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMR-LEGWKASQFTLGSVLRVCS 173

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDR-DVVSW 228
           ++  ++ G+ IHG++++ GF+ +  V + L DMY KC  ++EA  +F  +  DR + V W
Sbjct: 174 SLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLW 233

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           TAM+  Y Q G   +    F  +   G+  N +TF  +L AC+   A   G+QVHG++ +
Sbjct: 234 TAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVK 293

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G+    +  SALV MY+KCG+++N+K +   M   D+VSW SL+ G+ ++G+ ++AL  
Sbjct: 294 SGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRL 353

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F+ +     + D   F  VL  C    +  K +   H +  K G          +VD+ A
Sbjct: 354 FKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV---HGLIIKTGFENYKLVSNALVDMYA 410

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           ++G    A  V  KM ++ D   W SL+ G
Sbjct: 411 KTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 217/408 (53%), Gaps = 34/408 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S+++ C     ++ G+ +H  +  +GF+  VF+   L+DMYAKC  +S+A+ LF  +   
Sbjct: 167 SVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGL--- 223

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                                     E  ++++  WTAM++GY +     +A++ +R M 
Sbjct: 224 --------------------------EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMH 257

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             +    N++T  ++L+A S++     G+++HG+I+++GF S+  V SAL DMY KCG +
Sbjct: 258 A-QGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDL 316

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A+ + + M D DVVSW +++  + + G  EE   LF  +    ++ + +TF  VLN C
Sbjct: 317 KNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC 376

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
              +     K VHG + + G++ Y   ++ALV MY+K G+++ +  VF  M   D++SWT
Sbjct: 377 VVGSINP--KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWT 434

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           SL+ GYAQN   +++L+ F  +  +G  PD  +   +L+AC    L++ G Q  H    K
Sbjct: 435 SLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQ-VHLDFIK 493

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            GL ++   Y  +V + A+ G   +A+ +   M +K D   W +++ G
Sbjct: 494 SGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAIIVG 540



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 38/227 (16%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +E+L+I   +     +P   I +S++  C +   LE GK+VH     SG +    + N L
Sbjct: 447 EESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSL 506

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYAKCG + DA  +F  MQ +DV ++  +I G+ + G    +   +D           
Sbjct: 507 VAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYD----------- 555

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AM+S   R                      +  T   +L A S    +  G++    + +
Sbjct: 556 AMVSSGTR---------------------PDFITFIGLLFACSHAGLVDEGRKYFQQMNK 594

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMI 232
             G       ++ + D++G+ G ++EA+Q+ D+M V  D   W +++
Sbjct: 595 VYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLL 641


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/433 (38%), Positives = 256/433 (59%), Gaps = 37/433 (8%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK+V +     G +  V +   L+DMY+KCG                             
Sbjct: 287 GKEVQNCASELGIEGNVLVGTALIDMYSKCG----------------------------- 317

Query: 105 GGSLEQARNLFDE--MPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFT 161
             SL  AR++FD   +    N  W AMISGY +     EAL+LY +M QN     S+ +T
Sbjct: 318 --SLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN--GITSDLYT 373

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKM 220
             SV +A++A + L+ G+ +HG +++ G D   V V +A++D Y KCG + + R++FD+M
Sbjct: 374 YCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRM 433

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            +RD+VSWT ++  Y Q    EE  A F  + + G  PN FTF+ VL +CA     E G+
Sbjct: 434 EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGR 493

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           QVHG + + G D      SAL+ MY+KCG++  + KVF+ +  PD+VSWT++I+GYAQ+G
Sbjct: 494 QVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHG 553

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
           + + AL+ F  +  SG + + +  + VL AC+H G+V++GL YF  +++ +G+    +HY
Sbjct: 554 LVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHY 613

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           ACI+DLL R GR  +A + I KMPM+P++ +W +LLGGCR+HGN++L + AA  +  I P
Sbjct: 614 ACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRP 673

Query: 461 ENPATYVTMANIY 473
           E  ATYV ++N Y
Sbjct: 674 EYSATYVLLSNTY 686



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/423 (32%), Positives = 215/423 (50%), Gaps = 37/423 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    YS++IQ C    +LE GK VH+ +   GF   +F+S  LL+MYAK G+I D+  +
Sbjct: 165 PDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWV 224

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M E +  S+N MISG T  G                                 +EA 
Sbjct: 225 FNMMTEHNQVSWNAMISGCTSNG-------------------------------LHLEAF 253

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+  M+N      N +TL SV  AV  +  + +GKE+       G + + +V +AL DM
Sbjct: 254 DLFVRMKN-GACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDM 312

Query: 204 YGKCGSINEARQIFD-KMVDRDV-VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           Y KCGS+++AR +FD   ++  V   W AMI  Y Q G  +E   L+ ++ ++GI  + +
Sbjct: 313 YSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 372

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA-SALVHMYSKCGNVENSKKVFNG 320
           T+  V NA A   + + G+ VHG + + G D    +  +A+   YSKCG +E+ +KVF+ 
Sbjct: 373 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 432

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   D+VSWT+L+  Y+Q+ + ++AL  F L+ + G  P+   F  VL +C     ++ G
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 492

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            Q  H +  K GL       + ++D+ A+ G   EA  V  K+   PD   W +++ G  
Sbjct: 493 RQ-VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYA 550

Query: 441 IHG 443
            HG
Sbjct: 551 QHG 553



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 181/389 (46%), Gaps = 29/389 (7%)

Query: 67  LLDMYAKC---GNISDAQ-----TLFDEMQERDV-CSYNTMISGFTKGGSLEQARNLFDE 117
           L+D+   C   G+I +A+      L    +++D+   +N     ++K      A  +FDE
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 126

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MPQR+ FSWT MI G   +    +    +  M N    + +KF  S+++ +   +  L L
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLN-SGILPDKFAYSAIIQSCIGLDSLEL 185

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK +H  I+  GF +   V ++L +MY K GSI ++  +F+ M + + VSW AMI     
Sbjct: 186 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 245

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   E F LF  +      PN +T   V  A        +GK+V    + +G +     
Sbjct: 246 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 305

Query: 298 ASALVHMYSKCGNVENSKKVFN------GMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
            +AL+ MYSKCG++ +++ VF+      G+  P    W ++I+GY+Q+G   +ALE +  
Sbjct: 306 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTP----WNAMISGYSQSGCSQEALELYVQ 361

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY---FHSIKEKHGL-TYTADHYACIVDLL 407
           + ++G   D   +  V  A   +    K LQ+    H +  K GL          I D  
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAAS----KSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 417

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ G   +   V  +M  + D   W +L+
Sbjct: 418 SKCGFLEDVRKVFDRMEER-DIVSWTTLV 445


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 272/469 (57%), Gaps = 36/469 (7%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA ++ +Q+      P+   Y  L+  C  + AL  GK++HS +  +GF   + + N L
Sbjct: 310 EEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNAL 369

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY++C                               GS++ AR +FD+M ++D  SWT
Sbjct: 370 ISMYSRC-------------------------------GSIKDARLVFDKMVRKDVISWT 398

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AMI G  +     EAL +Y+ MQ       N+ T +S+L+A S+   L  G+ IH  ++ 
Sbjct: 399 AMIGGLAKSGFGAEALTVYQEMQQ-AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVE 457

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G  +D  V + L +MY  CGS+ +ARQ+FD+M+ RD+V++ AMIG Y      +E   L
Sbjct: 458 AGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKL 517

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  L + G++P+  T+  +LNACA+  + E  +++H  + + G+   +   +ALV  Y+K
Sbjct: 518 FDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAK 577

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+  ++  VF  M + +++SW ++I G AQ+G    AL+ FE +   G +PD + FV +
Sbjct: 578 CGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSL 637

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC+HAGL+++G +YF S+ +   +  T +HY C+VDLL R+G+  EAE +I  MP + 
Sbjct: 638 LSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQA 697

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +  +W +LLG CRIHGN+ +A+RAAE+  +++ +N   YV ++++YA+A
Sbjct: 698 NTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAA 746



 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/474 (29%), Positives = 254/474 (53%), Gaps = 45/474 (9%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +++AL++L Q+      P  +   S +  C+   ALE G+++H     +G    V ++NC
Sbjct: 107 IEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANC 166

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +L+MYAKCG+I +A+ +FD+M+++ V S+   I G+   G  E A  +F +M Q      
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQ------ 220

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                     E  V N+ T  SVL+A S+   L+ GK +H  I+
Sbjct: 221 --------------------------EGVVPNRITYISVLNAFSSPAALKWGKAVHSRIL 254

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G +SD  V +AL  MY KCGS  + RQ+F+K+V+RD+++W  MIG   + G  EE   
Sbjct: 255 NAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASE 314

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +++++ + G+ PN  T+  +LNAC + AA   GK++H  + + G+       +AL+ MYS
Sbjct: 315 VYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYS 374

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           +CG++++++ VF+ M R D++SWT++I G A++G   +AL  ++ + ++G +P+ + +  
Sbjct: 375 RCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTS 434

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC+    ++ G +    + E  GL   A     +V++ +  G   +A  V  +M ++
Sbjct: 435 ILNACSSPAALEWGRRIHQQVVEA-GLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQ 492

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMANIYASA 476
            D   + +++GG   H   +L K A +    ++ E    +  TY+ M N  A++
Sbjct: 493 RDIVAYNAMIGGYAAH---NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANS 543



 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/469 (30%), Positives = 234/469 (49%), Gaps = 55/469 (11%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
            Q +  + S Y  +++ C + + L  G++VH H+      P  +  N L++MY +CG+I 
Sbjct: 16  QQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIE 75

Query: 79  DAQTLFDEMQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           +A+ ++ ++   ER V S+N M+ G+ + G +E+A  L  +M Q                
Sbjct: 76  EARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQ---------------- 119

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
                                ++ T+ S LS+  +   L  G+EIH   M+ G   D  V
Sbjct: 120 ----------------HGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKV 163

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            + + +MY KCGSI EAR++FDKM  + VVSWT  IG Y   GR E  F +F ++ + G+
Sbjct: 164 ANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGV 223

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
            PN  T+  VLNA +  AA + GK VH  +   G++  +   +ALV MY+KCG+ ++ ++
Sbjct: 224 VPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQ 283

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF  +   DL++W ++I G A+ G  ++A E +  + + G  P+ I +V +L AC ++  
Sbjct: 284 VFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAA 343

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +  G +  HS   K G T        ++ + +R G   +A  V  KM ++ D   W +++
Sbjct: 344 LHWGKE-IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMI 401

Query: 437 GGCRIHGNLDLAKR--AAEALF--------EIEPENPATYVTMANIYAS 475
           GG        LAK    AEAL          +EP N  TY ++ N  +S
Sbjct: 402 GG--------LAKSGFGAEALTVYQEMQQAGVEP-NRVTYTSILNACSS 441



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 171/342 (50%), Gaps = 24/342 (7%)

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+D+ + +Q  + +  N      +L     ++ L  G+++H +I++     D+   +AL 
Sbjct: 7   AVDVVQYLQQ-QGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 202 DMYGKCGSINEARQIFDKM--VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           +MY +CGSI EARQ++ K+  ++R V SW AM+  Y Q G  E+   L  ++ + G+ P+
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPD 125

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T    L++C    A E G+++H    + G       A+ +++MY+KCG++E +++VF+
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFD 185

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M +  +VSWT  I GYA  G  + A E F+ + + G  P+ I ++ VL A +    +  
Sbjct: 186 KMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKW 245

Query: 380 GLQYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           G       K  H     A H +       +V + A+ G + +   V  K+ +  D   W 
Sbjct: 246 G-------KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWN 297

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMAN 471
           +++GG    G  +    A+E   +++ E    N  TYV + N
Sbjct: 298 TMIGGLAEGGYWE---EASEVYNQMQREGVMPNKITYVILLN 336



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 114/231 (49%), Gaps = 11/231 (4%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           L + G + N+  +  +L  C +      G+QVH ++ +    P  +  +AL++MY +CG+
Sbjct: 14  LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73

Query: 311 VENSKKVFNGMPRPDLV--SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           +E +++V+  +   +    SW +++ GY Q G  +KAL+    + + G  PD    +  L
Sbjct: 74  IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           ++C   G ++ G +  H    + GL +      CI+++ A+ G   EA +V  KM  K  
Sbjct: 134 SSCKSPGALEWGRE-IHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKME-KKS 191

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMANIYAS 475
              W   +GG   + +   ++ A E   ++E E    N  TY+++ N ++S
Sbjct: 192 VVSWTITIGG---YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSS 239


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/501 (35%), Positives = 264/501 (52%), Gaps = 63/501 (12%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C    +    ++L +   P    Y  L++   ++ A++ G+++H H+   GF   VF+ N
Sbjct: 99  CPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQN 158

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ +Y+  G +S                                AR +FD   + D  +
Sbjct: 159 ALIHLYSLSGEVS-------------------------------VARGVFDRSSKGDVVT 187

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W  MISGY R  Q  E++ L+  M+     + +  TL SVLSA S ++ L +GK +H Y+
Sbjct: 188 WNVMISGYNRSKQFDESMKLFDEMERMR-VLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINE-------------------------------AR 214
                +   V+ +AL DMY  CG ++                                AR
Sbjct: 247 KDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLAR 306

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
             FDKM +RD VSWTAMI  Y Q  R +E  +LF E+  + I+P+ FT   +L ACA   
Sbjct: 307 NYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLG 366

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A ELG+ +  Y+ +      SF  +AL+ MY  CGNVE + ++FN MP  D +SWT++I 
Sbjct: 367 ALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIF 426

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G A NG  ++AL+ F  +LK+   PD +  +GVL ACTH+G+VDKG ++F  +  +HG+ 
Sbjct: 427 GLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIE 486

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
               HY C+VDLL R+G   EA +VI  MP+KP+  +W SLLG CR+H + ++A+ AA+ 
Sbjct: 487 PNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQ 546

Query: 455 LFEIEPENPATYVTMANIYAS 475
           + E+EPEN A YV + NIYA+
Sbjct: 547 ILELEPENGAVYVLLCNIYAA 567



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 183/369 (49%), Gaps = 34/369 (9%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G +E AR +FD MP  ++F W  MI GY R   P  A+ +Y  M      + +++T   +
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLE-RGVMPDEYTYPFL 125

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L   +    ++ G+E+H +I++ GF S+  V +AL  +Y   G ++ AR +FD+    DV
Sbjct: 126 LKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V+W  MI  Y +  + +E   LF E+ +  + P++ T   VL+AC+      +GK+VH Y
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY 245

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG----- 340
           +  +  +P     +AL+ MY+ CG+++ +  +F+ M   D++SWT+++ G+   G     
Sbjct: 246 VKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLA 305

Query: 341 ------MPDK--------------------ALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
                 MP++                     L  F  +  +  +PD    V +LTAC H 
Sbjct: 306 RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHL 365

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G ++ G ++  +  +K+ +   +     ++D+    G   +A  + + MP + DK  W +
Sbjct: 366 GALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-DKISWTA 423

Query: 435 LLGGCRIHG 443
           ++ G  I+G
Sbjct: 424 VIFGLAING 432


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 269/448 (60%), Gaps = 17/448 (3%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK+ H    +S     +F+ NCL+DMYAK G + +A T+F  M  +DV S+N M++G+++
Sbjct: 248 GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQ 307

Query: 105 GGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
            G  E A  LF++M +     D  +W+A ISGY +     EAL + R M +      N+ 
Sbjct: 308 IGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS-SGIKPNEV 366

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGY-------IMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           TL SVLS  +++  L  GKEIH Y       + + G   + +V + L DMY KC  ++ A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIA 426

Query: 214 RQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNAFTFAGVLNA 269
           R +FD +   +RDVV+WT MIG Y Q G   +   L SE+ +     RPNAFT +  L A
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVA 486

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           CA  AA  +GKQ+H Y  R   +    F ++ L+ MY+KCG++ +++ VF+ M   + V+
Sbjct: 487 CASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVT 546

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WTSL+ GY  +G  ++AL  FE + + G + D +  + VL AC+H+G++D+G++YF+ +K
Sbjct: 547 WTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMK 606

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
              G++   +HYAC+VDLL R+GR + A  +I +MPM+P   +W +LL  CRIHG ++L 
Sbjct: 607 TDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELG 666

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           + AA+ + E+   N  +Y  ++N+YA+A
Sbjct: 667 EYAAKKITELASNNDGSYTLLSNMYANA 694



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/477 (26%), Positives = 223/477 (46%), Gaps = 85/477 (17%)

Query: 17  ILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++H +S  P    +  + + C +  ++  G   H+  + +GF   VF+ N L+ MY++CG
Sbjct: 117 LMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCG 176

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           ++SDA+ +FDEM   DV S+N++I  + K G                             
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLG----------------------------- 207

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
             +P  AL+++  M N      +  TL +VL   +++    LGK+ HG+ + +    +  
Sbjct: 208 --KPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMF 265

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS------ 249
           V + L DMY K G ++EA  +F  M  +DVVSW AM+  Y Q GR E+   LF       
Sbjct: 266 VGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEK 325

Query: 250 -----------------------------ELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
                                        +++ SGI+PN  T   VL+ CA   A   GK
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385

Query: 281 QVHGY-------MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRP-DLVSWTS 331
           ++H Y       + + G+   +   + L+ MY+KC  V+ ++ +F+ + P+  D+V+WT 
Sbjct: 386 EIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTV 445

Query: 332 LIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIK 388
           +I GY+Q+G  +KALE    + +    T+P+       L AC     +  G Q + ++++
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALR 505

Query: 389 EKHGLT--YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +      + ++   C++D+ A+ G   +A  V   M M+ ++  W SL+ G  +HG
Sbjct: 506 NQQNAVPLFVSN---CLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHG 558



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 207/477 (43%), Gaps = 54/477 (11%)

Query: 37  RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96
           R+   L    K H HLK S F               KC  IS  + +  ++    + + N
Sbjct: 3   RRLVTLRAAAKSHQHLKVSLFSTSAL--EITPPFIHKCKTISQVKLIHQKLLSFGILTLN 60

Query: 97  T---MISGFTKGGSLEQARNLFDEMPQRDN--FSWTAMISGYVRYNQPIEALDLYRMMQN 151
               +IS +   G L  A +L    P  D   + W ++I  Y    +  + L  + +M +
Sbjct: 61  LTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHS 120

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
              +  N +T   V  A   I  +R G   H     TGF S+  V +AL  MY +CGS++
Sbjct: 121 LSWTPDN-YTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLS 179

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNAC 270
           +AR++FD+M   DVVSW ++I  Y + G+ +    +FS++    G RP+  T   VL  C
Sbjct: 180 DARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPC 239

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A      LGKQ HG+          F  + LV MY+K G ++ +  VF+ MP  D+VSW 
Sbjct: 240 ASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWN 299

Query: 331 SLIAGYAQNGMPDKALEYFE-----------------------------------LLLKS 355
           +++AGY+Q G  + A+  FE                                    +L S
Sbjct: 300 AMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYT--ADHYACI---VDLLAR 409
           G +P+ +  + VL+ C   G +  G + + ++IK    L      D    I   +D+ A+
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAK 419

Query: 410 SGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
             +   A  +   + P + D   W  ++GG   HG+   A +A E L E+  E+  T
Sbjct: 420 CKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGD---ANKALELLSEMFEEDCQT 473


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/433 (38%), Positives = 256/433 (59%), Gaps = 37/433 (8%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK+V +     G +  V +   L+DMY+KCG                             
Sbjct: 341 GKEVQNCASELGIEGNVLVGTALIDMYSKCG----------------------------- 371

Query: 105 GGSLEQARNLFDE--MPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFT 161
             SL  AR++FD   +    N  W AMISGY +     EAL+LY +M QN     S+ +T
Sbjct: 372 --SLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN--GITSDLYT 427

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKM 220
             SV +A++A + L+ G+ +HG +++ G D   V V +A++D Y KCG + + R++FD+M
Sbjct: 428 YCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRM 487

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            +RD+VSWT ++  Y Q    EE  A F  + + G  PN FTF+ VL +CA     E G+
Sbjct: 488 EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGR 547

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           QVHG + + G D      SAL+ MY+KCG++  + KVF+ +  PD+VSWT++I+GYAQ+G
Sbjct: 548 QVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHG 607

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
           + + AL+ F  +  SG + + +  + VL AC+H G+V++GL YF  +++ +G+    +HY
Sbjct: 608 LVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHY 667

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           ACI+DLL R GR  +A + I KMPM+P++ +W +LLGGCR+HGN++L + AA  +  I P
Sbjct: 668 ACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRP 727

Query: 461 ENPATYVTMANIY 473
           E  ATYV ++N Y
Sbjct: 728 EYSATYVLLSNTY 740



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/423 (32%), Positives = 215/423 (50%), Gaps = 37/423 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    YS++IQ C    +LE GK VH+ +   GF   +F+S  LL+MYAK G+I D+  +
Sbjct: 219 PDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWV 278

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M E +  S+N MISG T  G                                 +EA 
Sbjct: 279 FNMMTEHNQVSWNAMISGCTSNG-------------------------------LHLEAF 307

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+  M+N      N +TL SV  AV  +  + +GKE+       G + + +V +AL DM
Sbjct: 308 DLFVRMKN-GACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDM 366

Query: 204 YGKCGSINEARQIFD-KMVDRDV-VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           Y KCGS+++AR +FD   ++  V   W AMI  Y Q G  +E   L+ ++ ++GI  + +
Sbjct: 367 YSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 426

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA-SALVHMYSKCGNVENSKKVFNG 320
           T+  V NA A   + + G+ VHG + + G D    +  +A+   YSKCG +E+ +KVF+ 
Sbjct: 427 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 486

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   D+VSWT+L+  Y+Q+ + ++AL  F L+ + G  P+   F  VL +C     ++ G
Sbjct: 487 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 546

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            Q  H +  K GL       + ++D+ A+ G   EA  V  K+   PD   W +++ G  
Sbjct: 547 RQ-VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYA 604

Query: 441 IHG 443
            HG
Sbjct: 605 QHG 607



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 181/389 (46%), Gaps = 29/389 (7%)

Query: 67  LLDMYAKC---GNISDAQ-----TLFDEMQERDV-CSYNTMISGFTKGGSLEQARNLFDE 117
           L+D+   C   G+I +A+      L    +++D+   +N     ++K      A  +FDE
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 180

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MPQR+ FSWT MI G   +    +    +  M N    + +KF  S+++ +   +  L L
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLN-SGILPDKFAYSAIIQSCIGLDSLEL 239

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK +H  I+  GF +   V ++L +MY K GSI ++  +F+ M + + VSW AMI     
Sbjct: 240 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 299

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   E F LF  +      PN +T   V  A        +GK+V    + +G +     
Sbjct: 300 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 359

Query: 298 ASALVHMYSKCGNVENSKKVFN------GMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
            +AL+ MYSKCG++ +++ VF+      G+  P    W ++I+GY+Q+G   +ALE +  
Sbjct: 360 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTP----WNAMISGYSQSGCSQEALELYVQ 415

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY---FHSIKEKHGL-TYTADHYACIVDLL 407
           + ++G   D   +  V  A   +    K LQ+    H +  K GL          I D  
Sbjct: 416 MCQNGITSDLYTYCSVFNAIAAS----KSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 471

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ G   +   V  +M  + D   W +L+
Sbjct: 472 SKCGFLEDVRKVFDRMEER-DIVSWTTLV 499



 Score = 38.5 bits (88), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+      + EA ++  +IS+P    ++++I    Q+  +E+  ++   ++ SG K   
Sbjct: 569 IDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA 628

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE-----RDVCSYNTMISGFTKGGSLEQARNLFD 116
               C+L   +  G + +    F +M++      ++  Y  +I    + G L+ A     
Sbjct: 629 VTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIR 688

Query: 117 EMPQRDN-FSWTAMISG 132
           +MP   N   W  ++ G
Sbjct: 689 KMPMEPNEMVWQTLLGG 705


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 268/450 (59%), Gaps = 13/450 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++++  C   RA  EG++VH+H+  + + P VF+   L+ +Y KC ++ DA  +FDEM 
Sbjct: 246 YNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMP 305

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           ER+V S+  MIS +++ G   QA NLF    +    S T + +        I+ L L   
Sbjct: 306 ERNVVSWTAMISAYSQRGYASQALNLFFADVK---ISLTGVYA--------IDKLKLSNP 354

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
            + +  +  N+FT ++VL++ ++     LG++IH  I++  ++    V S+L DMY K G
Sbjct: 355 NRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDG 414

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I+EAR +F+ + +RDVVS TA+I  Y Q G  EE   LF  L   G++ N  T+ GVL 
Sbjct: 415 KIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLT 474

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A +  AA +LGKQVH ++ R     +    ++L+ MYSKCGN+  S+++F+ M    ++S
Sbjct: 475 ALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVIS 534

Query: 329 WTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           W +++ GY+++G   + L+ F L+  ++  +PD +  + VL+ C+H GL DKGL  F+ +
Sbjct: 535 WNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDM 594

Query: 388 KE-KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              K  +    +HY C+VDLL RSGR  EA + I KMP +P   +W SLLG CR+H N+D
Sbjct: 595 SSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVD 654

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           + + A + L EIEP N   YV ++N+YASA
Sbjct: 655 IGEFAGQQLLEIEPGNAGNYVILSNLYASA 684



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 164/318 (51%), Gaps = 36/318 (11%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P+   +++++  C  +     G+++HS +    ++  VF+ + LLDMYAK G I +A+
Sbjct: 361 TEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEAR 420

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
           T+F+ + ERDV S   +ISG+ + G         DE                       E
Sbjct: 421 TVFECLPERDVVSCTAIISGYAQLG--------LDE-----------------------E 449

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           AL+L+R +Q  E   SN  T + VL+A+S +  L LGK++H +++R+   S  V+ ++L 
Sbjct: 450 ALELFRRLQG-EGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLI 508

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNA 260
           DMY KCG++  +R+IFD M +R V+SW AM+  Y + G   E   LF+ +  ++ ++P++
Sbjct: 509 DMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDS 568

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMT--RIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
            T   VL+ C+    E+ G  +   M+  +I  +P       +V +  + G VE + +  
Sbjct: 569 VTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFI 628

Query: 319 NGMP-RPDLVSWTSLIAG 335
             MP  P    W SL+  
Sbjct: 629 KKMPFEPTAAIWGSLLGA 646


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 261/453 (57%), Gaps = 32/453 (7%)

Query: 24   PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
            P    ++S++  C+   ALE G+++H  +  SG +  V + N L++MY +CG        
Sbjct: 585  PDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCG-------- 636

Query: 84   FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   SL+ A  +F  +  R+  SWTAMI G+    +  +A 
Sbjct: 637  -----------------------SLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAF 673

Query: 144  DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            +L+  MQN +     K T SS+L A  +  CL  GK++  +I+ +G++ D  V +AL   
Sbjct: 674  ELFWQMQN-DGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISA 732

Query: 204  YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
            Y K GS+ +AR++FDKM +RD++SW  MI  Y Q G          ++ + G+  N F+F
Sbjct: 733  YSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSF 792

Query: 264  AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              +LNAC+  +A E GK+VH  + +          +AL+ MY+KCG++E +++VF+    
Sbjct: 793  VSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTE 852

Query: 324  PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             ++V+W ++I  YAQ+G+  KAL++F  + K G +PD   F  +L+AC H+GLV +G + 
Sbjct: 853  KNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRI 912

Query: 384  FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            F S++ +HGL+ T +HY C+V LL R+GRF EAE +I++MP  PD  +W +LLG CRIHG
Sbjct: 913  FSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHG 972

Query: 444  NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N+ LA+ AA    ++   NPA YV ++N+YA+A
Sbjct: 973  NVALAEHAANNALKLNARNPAVYVLLSNVYAAA 1005



 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 208/412 (50%), Gaps = 34/412 (8%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           + Y S++  C  ++AL  G+ +HSH+   G    V I N L+ MYA+C            
Sbjct: 386 TTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARC------------ 433

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                              G L +AR LF+ MP+RD  SW A+I+GY R     EA+ LY
Sbjct: 434 -------------------GDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLY 474

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           + MQ+ E     + T   +LSA +       GK IH  I+R+G  S+  + +AL +MY +
Sbjct: 475 KQMQS-EGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRR 533

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CGSI EA+ +F+    RD++SW +MI  + Q G  E  + LF E+ K G+ P+  TFA V
Sbjct: 534 CGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASV 593

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L  C +  A ELG+Q+H  +   G        +AL++MY +CG+++++ +VF+ +   ++
Sbjct: 594 LVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNV 653

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SWT++I G+A  G   KA E F  +   G +P    F  +L AC  +  +D+G +    
Sbjct: 654 MSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAH 713

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           I    G          ++   ++SG   +A  V  KMP + D   W  ++ G
Sbjct: 714 ILNS-GYELDTGVGNALISAYSKSGSMTDARKVFDKMPNR-DIMSWNKMIAG 763



 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/501 (28%), Positives = 238/501 (47%), Gaps = 77/501 (15%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           K+A Q+  ++      PS   Y S++  C     LE GKK+HS +  +G++    + N L
Sbjct: 165 KKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSL 224

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM------PQR 121
           L+MY KC ++  A+ +F  +  RDV SYNTM+  + +   +E+   LF +M      P +
Sbjct: 225 LNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDK 284

Query: 122 -------DNFSW--------------------------TAMISGYVR------------- 135
                  D F+                           TA+ + +VR             
Sbjct: 285 VTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEA 344

Query: 136 --------YNQPIEAL----------DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
                   YN  I AL          + Y  M++ +  V N+ T  SVL+A S  + L  
Sbjct: 345 FADRDVVVYNALIAALAQHGHYEEAFEQYYQMRS-DGVVMNRTTYLSVLNACSTSKALGA 403

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+ IH +I   G  SD  + ++L  MY +CG +  AR++F+ M  RD++SW A+I  Y +
Sbjct: 404 GELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYAR 463

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
              R E   L+ ++   G++P   TF  +L+AC + +A   GK +H  + R G       
Sbjct: 464 REDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHL 523

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+AL++MY +CG++  ++ VF G    D++SW S+IAG+AQ+G  + A + F  + K G 
Sbjct: 524 ANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGL 583

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD I F  VL  C +   ++ G Q  H +  + GL    +    ++++  R G   +A 
Sbjct: 584 EPDKITFASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAY 642

Query: 418 DVISKMPMKPDKFLWASLLGG 438
           +V   +  + +   W +++GG
Sbjct: 643 EVFHSLRHR-NVMSWTAMIGG 662



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 233/501 (46%), Gaps = 78/501 (15%)

Query: 23  HPSPS-----IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
            P P+      Y  L+Q C + R+L E K++H+ +  +G  P +F+SN L++MY KC ++
Sbjct: 74  QPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 133

Query: 78  SDAQT-------------------------------LFDEMQ------------------ 88
           SDA                                 LF+EMQ                  
Sbjct: 134 SDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTAC 193

Query: 89  ---------------------ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
                                +RD    N++++ + K   L  AR +F  + +RD  S+ 
Sbjct: 194 CSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYN 253

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            M+  Y +     E + L+  M + E    +K T  ++L A +    L  GK IH   + 
Sbjct: 254 TMLGLYAQKAYVEECIGLFGQMSS-EGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVN 312

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G +SD  V +AL+ M+ +CG +  A+Q  +   DRDVV + A+I    Q G  EE F  
Sbjct: 313 EGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQ 372

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           + ++   G+  N  T+  VLNAC+   A   G+ +H +++ +G+       ++L+ MY++
Sbjct: 373 YYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYAR 432

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG++  ++++FN MP+ DL+SW ++IAGYA+     +A++ ++ +   G +P  + F+ +
Sbjct: 433 CGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHL 492

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+ACT++     G +  H    + G+         ++++  R G   EA++V      + 
Sbjct: 493 LSACTNSSAYSDG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR- 550

Query: 428 DKFLWASLLGGCRIHGNLDLA 448
           D   W S++ G   HG+ + A
Sbjct: 551 DIISWNSMIAGHAQHGSYEAA 571



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 168/335 (50%), Gaps = 38/335 (11%)

Query: 7   NQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           +Q   ++A ++  Q+ +    P  S +SS+++ C  +  L+EGKKV +H+ +SG++    
Sbjct: 665 DQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG 724

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + N L+  Y+K G+++DA+ +FD+M  RD+ S+N MI+G+ + G                
Sbjct: 725 VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNG---------------- 768

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
               TA+   Y    Q +               V NKF+  S+L+A S+   L  GK +H
Sbjct: 769 -LGGTALQFAYQMQEQGV---------------VLNKFSFVSILNACSSFSALEEGKRVH 812

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
             I++     D  V +AL  MY KCGS+ EA+++FD   +++VV+W AMI  Y Q G   
Sbjct: 813 AEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLAS 872

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASAL 301
           +    F+ + K GI+P+  TF  +L+AC        G ++   + ++ G  P       L
Sbjct: 873 KALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCL 932

Query: 302 VHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           V +  + G  + ++ + N MP  PD   W +L+  
Sbjct: 933 VGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGA 967



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 162/319 (50%), Gaps = 9/319 (2%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           +N+     ++   +  + L   K IH  ++  G   D  + + L +MY KC S+++A Q+
Sbjct: 80  TNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQV 139

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F KM  RDV+SW ++I  Y Q+G +++ F LF E+  +G  P+  T+  +L AC   A  
Sbjct: 140 FLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAEL 199

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           E GK++H  +   GY       ++L++MY KC ++ ++++VF+G+ R D+VS+ +++  Y
Sbjct: 200 EYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLY 259

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQ    ++ +  F  +   G  PD + ++ +L A T   ++D+G +  H +    GL   
Sbjct: 260 AQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEG-KRIHKLAVNEGLNSD 318

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
                 +  +  R G    A+  +     + D  ++ +L+     HG+ +    A E  +
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAFADR-DVVVYNALIAALAQHGHYE---EAFEQYY 374

Query: 457 EIEPE----NPATYVTMAN 471
           ++  +    N  TY+++ N
Sbjct: 375 QMRSDGVVMNRTTYLSVLN 393


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 275/472 (58%), Gaps = 15/472 (3%)

Query: 13  EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           +AL++  +I  P    +S++I    Q     E  +V   ++ SG  P  F    L+    
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 73  KCGNISDAQTLFDEMQERDVCSY---------NTMISGFTKGGSLEQARNLFDEMPQRDN 123
             G++      + E     VC Y         N +++ + K GS++    +F+    RD 
Sbjct: 443 DLGDL-----YYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDL 497

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SW A++SG+         L ++  M   E    N +T  S+L + S++  + LGK++H 
Sbjct: 498 ISWNALLSGFHDNETCDTGLRIFNQMLA-EGFNPNMYTFISILRSCSSLSDVDLGKQVHA 556

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            I++   D ++ V +AL DMY K   + +A  IF++++ RD+ +WT ++  Y Q+G+ E+
Sbjct: 557 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEK 616

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
               F ++ + G++PN FT A  L+ C+  A  + G+Q+H    + G     F ASALV 
Sbjct: 617 AVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVD 676

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+KCG VE+++ VF+G+   D VSW ++I GY+Q+G   KAL+ FE +L  GT PD + 
Sbjct: 677 MYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVT 736

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+GVL+AC+H GL+++G ++F+S+ + +G+T T +HYAC+VD+L R+G+FHE E  I +M
Sbjct: 737 FIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEM 796

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +  +  +W ++LG C++HGN++  +RAA  LFE+EPE  + Y+ ++N++A+
Sbjct: 797 KLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAA 848



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 219/438 (50%), Gaps = 43/438 (9%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           A+++ C  RR  E ++        +   Y++ ++ C     LE GK+VH+     G    
Sbjct: 213 AVNLFCEMRR--EGVE-------ANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSD 263

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+ + L+D+YAKCG +  A+ +F       +C                        MP+
Sbjct: 264 LFVGSALVDLYAKCGEMVLAERVF-------LC------------------------MPK 292

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           ++  SW A+++G+ +     + L+L+  M   E + S KFTLS+VL   +    LR G+ 
Sbjct: 293 QNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFS-KFTLSTVLKGCANSGNLRAGQI 351

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H   +R G + DE +   L DMY KCG   +A ++F ++ D DVVSW+A+I    Q+G+
Sbjct: 352 VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQ 411

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E   +F  +  SG+ PN FT A +++A  D      G+ +H  + + G++  +   +A
Sbjct: 412 SREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNA 471

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY K G+V++  +VF      DL+SW +L++G+  N   D  L  F  +L  G  P+
Sbjct: 472 LVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPN 531

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
              F+ +L +C+    VD G Q  H+   K+ L         +VD+ A++    +AE + 
Sbjct: 532 MYTFISILRSCSSLSDVDLGKQ-VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIF 590

Query: 421 SKMPMKPDKFLWASLLGG 438
           +++ +K D F W  ++ G
Sbjct: 591 NRL-IKRDLFAWTVIVAG 607



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 204/442 (46%), Gaps = 35/442 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           YS +++ C     L EGK +H  +  SG  P   + N L+++YAKC              
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC-------------- 176

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                            GS   A  +F E+P+RD  SWTA+I+G+V       A++L+  
Sbjct: 177 -----------------GSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+  E   +N+FT ++ L A S    L  GK++H   ++ G  SD  V SAL D+Y KCG
Sbjct: 220 MRR-EGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCG 278

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  A ++F  M  ++ VSW A++  + Q G  E+   LF  +  S I  + FT + VL 
Sbjct: 279 EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLK 338

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            CA+      G+ VH    RIG +   F +  LV MYSKCG   ++ KVF  +  PD+VS
Sbjct: 339 GCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVS 398

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W+++I    Q G   +A E F+ +  SG  P+      +++A T  G +  G +  H+  
Sbjct: 399 WSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYG-ESIHACV 457

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            K+G  Y       +V +  + G   +   V      + D   W +LL G   +   D  
Sbjct: 458 CKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNR-DLISWNALLSGFHDNETCDTG 516

Query: 449 KRAAEALFEIEPENPATYVTMA 470
            R    +   E  NP  Y  ++
Sbjct: 517 LRIFNQMLA-EGFNPNMYTFIS 537



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 34/239 (14%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++ +K  +Q+  +   P+    +S +  C +   L+ G+++HS    +G    +F+++ L
Sbjct: 615 EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASAL 674

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG + DA+ +FD +  RD  S+NT+I G+++ G   +A   F+ M         
Sbjct: 675 VDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAM--------- 725

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                          LD        E +V ++ T   VLSA S +  +  GK+    + +
Sbjct: 726 ---------------LD--------EGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSK 762

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEG 244
             G       ++ + D+ G+ G  +E     ++M +  +V+ W  ++G     G  E G
Sbjct: 763 IYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFG 821


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 277/483 (57%), Gaps = 11/483 (2%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
            +D+      L +A +I + +   S   Y+++I  C +N    E  +    L  SG    
Sbjct: 318 TLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLG-- 375

Query: 61  VFISNCLLDMYAKCGNIS---DAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARN 113
            F    L   ++ C +I    D + L           ++C  N+++  + K  +L +A  
Sbjct: 376 -FNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACC 434

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           +FDEM +RD  SW A+I+ + +     E L+L+  M        ++FT  SVL A S+ Q
Sbjct: 435 MFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRME-PDQFTYGSVLKACSSQQ 493

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            L  G EIH  I+++G   D  V  AL DMY KCG I EA++I D++  + +VSW A+I 
Sbjct: 494 ALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIA 553

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            +      E+  + F E++K  ++P+ FT+A VL+ACA+ A+  LGKQ+HG + ++    
Sbjct: 554 GFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHS 613

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             +  S LV MYSKCGN+++S  VF   P  D V+W ++I GYAQ+G+ ++AL YFE + 
Sbjct: 614 DVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQ 673

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
               +P+H  FV +L AC H G +DKGL YF+++  ++GL    +HY+C++D++ RSGR 
Sbjct: 674 LENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRI 733

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            EA  +I +MP + D  +W +LL  C+IHGN+++A++A  A+ ++EPE+ +  + ++NIY
Sbjct: 734 SEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIY 793

Query: 474 ASA 476
           A A
Sbjct: 794 ADA 796



 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 135/416 (32%), Positives = 230/416 (55%), Gaps = 2/416 (0%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S +IQ C    +L+ GK+ H+ +  SGF P V+ISNCL+ MY +C +++ A  +F++M 
Sbjct: 46  FSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMS 105

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +RDV SYNTMISG+   G +  A   F + P+RD  SW +M+SG+++  +  +++D++  
Sbjct: 106 QRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLD 165

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M   E    ++ T + VL A S ++   LG ++HG I+R GF  D V  SAL DMY KC 
Sbjct: 166 MGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCK 225

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            ++++ +IF ++  ++ V W+A+I    Q      G  LF E+ K GI  +   +A V  
Sbjct: 226 RLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFR 285

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA  +A ++G Q+H +  +  +       +A + MY+KCG++ +++++FN +P+  L  
Sbjct: 286 SCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQC 345

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           + ++I G  +N    +AL++F+LLLKSG   + I   G  +AC        G Q  HS+ 
Sbjct: 346 YNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQ-LHSLS 404

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            K  L         I+D+  +     EA  +  +M  + D   W +++     +GN
Sbjct: 405 VKSTLRSNICVANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGN 459



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 227/452 (50%), Gaps = 47/452 (10%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S SIY+S+ + C    AL+ G ++H+H     F   + +    LDMYAKCG+++DAQ +F
Sbjct: 276 SQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIF 335

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           + + +  +  YN                               A+I G VR  +  EAL 
Sbjct: 336 NSLPKHSLQCYN-------------------------------AIIVGCVRNEKGFEALQ 364

Query: 145 LYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++++   ++ +  N+ +LS   SA ++I+    G+++H   +++   S+  V +++ DM
Sbjct: 365 FFQLL--LKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDM 422

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKC +++EA  +FD+M  RD VSW A+I  + Q G  EE   LF+ +++  + P+ FT+
Sbjct: 423 YGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTY 482

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL AC+   A   G ++H  + + G    SF   AL+ MY KCG +E +KK+ + + +
Sbjct: 483 GSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQ 542

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             +VSW ++IAG+      + A  +F  +LK   +PD+  +  VL AC +   V  G Q 
Sbjct: 543 QTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQI 602

Query: 384 FHSI--KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
              I   E H   Y     + +VD+ ++ G   ++  V  K P K D   W +++ G   
Sbjct: 603 HGQIIKLELHSDVYIT---STLVDMYSKCGNMQDSALVFEKAPNK-DFVTWNAMICGYAQ 658

Query: 442 HGNLDLAKRAAEALFEIEPENP----ATYVTM 469
           HG   L + A      ++ EN     AT+V++
Sbjct: 659 HG---LGEEALGYFERMQLENVRPNHATFVSI 687



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 207/458 (45%), Gaps = 68/458 (14%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G +VH  +   GF   V   + LLDMYAKC  + D+                        
Sbjct: 195 GIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDS------------------------ 230

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
                    +F E+P ++   W+A+I+G V+ ++ I  L+L++ MQ     VS     +S
Sbjct: 231 -------LKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSI-YAS 282

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           V  + + +  L++G ++H + ++  F SD  V +A  DMY KCGS+ +A++IF+ +    
Sbjct: 283 VFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHS 342

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           +  + A+I    +  +  E    F  L+KSG+  N  + +G  +ACA    +  G+Q+H 
Sbjct: 343 LQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHS 402

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
              +         A++++ MY KC  +  +  +F+ M R D VSW ++IA + QNG  ++
Sbjct: 403 LSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEE 462

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
            L  F  +L+   +PD   +  VL AC+    ++ G++  H+   K GL   +     ++
Sbjct: 463 TLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGME-IHNRIIKSGLGLDSFVGGALI 521

Query: 405 DLLARSGRFHEAEDV----------------------------------ISKMPMKPDKF 430
           D+  + G   EA+ +                                  + KM +KPD F
Sbjct: 522 DMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNF 581

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
            +A +L  C    ++ L K+    + ++E  +   Y+T
Sbjct: 582 TYAIVLDACANLASVGLGKQIHGQIIKLELHSD-VYIT 618



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 159/347 (45%), Gaps = 39/347 (11%)

Query: 129 MISGYVRYNQPIEALDLYRM--MQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHGYI 185
           +I+  + YN+ +       +  +Q  +  +  K  T S ++   S    L+ GK+ H  +
Sbjct: 10  LIASRILYNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARM 69

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD----------------------- 222
           + +GF  D  + + L  MY +C  +N A ++F+KM                         
Sbjct: 70  IVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLAN 129

Query: 223 --------RDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNACADH 273
                   RDVVSW +M+  + Q G   +   +F ++ +S  +  +  TFA VL AC+  
Sbjct: 130 EFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVL 189

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               LG QVHG + R+G+       SAL+ MY+KC  +++S K+F+ +P  + V W+++I
Sbjct: 190 EDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAII 249

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHG 392
           AG  QN      LE F+ + K G      ++  V  +C     +  G Q + H++K   G
Sbjct: 250 AGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFG 309

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
              T       +D+ A+ G   +A+ + + +P K     + +++ GC
Sbjct: 310 SDITVG--TATLDMYAKCGSLADAQRIFNSLP-KHSLQCYNAIIVGC 353


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/455 (39%), Positives = 255/455 (56%), Gaps = 44/455 (9%)

Query: 63  ISNCLLDMYAK--------CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           + N LL +Y K        C  +  A+ LFDEM +RD  ++ TMI+G+ +   L  AR +
Sbjct: 186 VLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREV 245

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F+ M +    +W AMISGYV      EAL L R M+ F     +  T ++++SA + +  
Sbjct: 246 FEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMR-FLGIQFDDITYTTIISACANVGS 304

Query: 175 LRLGKEIHGYIMRTGFDSDEV----VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
            ++GK++H YI++   + +      V +AL  +Y K   ++EAR+IF  M  R++++W A
Sbjct: 305 FQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNA 364

Query: 231 MIGRYFQEGRREE-------------------------------GFALFSELIKSGIRPN 259
           ++  Y   GR EE                               G  LF ++   G  P 
Sbjct: 365 ILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC 424

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            F FAG L AC+   A E G+Q+H  +  +GY+      +A++ MY+KCG VE ++ VF 
Sbjct: 425 DFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFV 484

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            MP  DLVSW S+IA   Q+G   KA+E F+ +LK G  PD I F+ VLTAC+HAGLV+K
Sbjct: 485 TMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEK 544

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G  YF+S+ E +G+T   DHYA +VDL  R+G F  A  VI  MP KP   +W +LL GC
Sbjct: 545 GRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGC 604

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           RIHGN+DL   AAE LF++ P+N  TYV ++NIYA
Sbjct: 605 RIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYA 639



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 230/500 (46%), Gaps = 91/500 (18%)

Query: 29  YSSLIQFC--RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           Y+  +Q C  +   +    + VH+H+ +SGFKP     N LL+MY K  N+  A+ LF+E
Sbjct: 14  YAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEE 73

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALD 144
           +   D  +  T+I+ +   G+LE  R +F+  P   RD+  + AMI+GY        AL+
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-----IHGYIMRTG---------- 189
           L+R M+  ++   + FT +SVLSA+     L +G E     +H  +++TG          
Sbjct: 134 LFRAMRR-DDFRPDDFTFTSVLSAL----VLFVGNEQQCGQMHCAVVKTGMGCVSSSVLN 188

Query: 190 --------------------------FDS----DEVVWSALSDMYGKCGSINEARQIFDK 219
                                     FD     DE+ W+ +   Y +   +N AR++F+ 
Sbjct: 189 ALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEA 248

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           MV+    +W AMI  Y   G  +E   L  ++   GI+ +  T+  +++ACA+  + ++G
Sbjct: 249 MVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMG 308

Query: 280 KQVHGYMTRIGYDP-YSFAAS---ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
           KQVH Y+ +   +P +SF  S   AL+ +Y K   V+ ++K+F  MP  ++++W ++++G
Sbjct: 309 KQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSG 368

Query: 336 Y-------------------------------AQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y                               AQNG  D+ L+ F+ +   G +P    F
Sbjct: 369 YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAF 428

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
            G LTAC+  G ++ G Q  H+     G   +      ++ + A+ G    AE V   MP
Sbjct: 429 AGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487

Query: 425 MKPDKFLWASLLGGCRIHGN 444
              D   W S++     HG+
Sbjct: 488 -SVDLVSWNSMIAALGQHGH 506



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 173/340 (50%), Gaps = 11/340 (3%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG----VFISNCLLDMYAKCGNISDAQTLF 84
           Y+++I  C    + + GK+VH+++  +   P     + +SN L+ +Y K   + +A+ +F
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
             M  R++ ++N ++SG+   G +E+A++ F+EMP ++  + T MISG  +     E L 
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 145 LYRMMQ--NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L++ M+   FE      F  +  L+A S +  L  G+++H  ++  G++S   V +A+  
Sbjct: 412 LFKQMRLDGFEPC---DFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMIS 468

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG +  A  +F  M   D+VSW +MI    Q G   +   LF +++K G+ P+  T
Sbjct: 469 MYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRIT 528

Query: 263 FAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F  VL AC+     E G+     M    G  P     + +V ++ + G    ++ V + M
Sbjct: 529 FLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSM 588

Query: 322 P-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           P +P    W +L+AG   +G  D  +E  E L K   Q D
Sbjct: 589 PSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND 628



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 7/253 (2%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N  R++EA     ++   +    + +I    QN   +EG K+   ++  GF+P  F    
Sbjct: 371 NAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAG 430

Query: 67  LLDMYAKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            L   +  G + + + L  ++     E  +   N MIS + K G +E A ++F  MP  D
Sbjct: 431 ALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVD 490

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             SW +MI+   ++   ++A++L+  M   E    ++ T  +VL+A S    +  G+   
Sbjct: 491 LVSWNSMIAALGQHGHGVKAIELFDQMLK-EGVFPDRITFLTVLTACSHAGLVEKGRHYF 549

Query: 183 GYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGR 240
             ++ + G    E  ++ + D++ + G  + AR + D M  +     W A++      G 
Sbjct: 550 NSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGN 609

Query: 241 REEGFALFSELIK 253
            + G     +L K
Sbjct: 610 MDLGIEAAEQLFK 622



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 22/226 (9%)

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           A+ + +I SG +P       +L      +     +Q+   +     +P + A + L+  Y
Sbjct: 34  AVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIP----NPDAIARTTLITAY 89

Query: 306 SKCGNVENSKKVFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
              GN+E  +++FNG P    D V + ++I GYA NG    ALE F  + +   +PD   
Sbjct: 90  CALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFT 149

Query: 364 FVGVLTACT------------HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           F  VL+A              H  +V  G+    S      L+      +   +L     
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRAS---ELGISCS 206

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
               A  +  +MP K D+  W +++ G   + +L+ A+   EA+ E
Sbjct: 207 AMVSARKLFDEMP-KRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 259/446 (58%), Gaps = 32/446 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL+QFC +NR    GK  H  +   G +     SN L++MY+KC                
Sbjct: 3   SLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKC---------------- 46

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G + +A  +FDE+P+R   SW  MI   V+  +  +A+D++  MQ
Sbjct: 47  ---------------GLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQ 91

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E S  ++FT+SSV+ A +A   +   +++H + ++   D+D  V +AL D+Y KCGSI
Sbjct: 92  R-EGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSI 150

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A  +F+ M +R+ V+W++++  + Q    EEG  LF+   + G+  N F  + V+ AC
Sbjct: 151 EDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRAC 210

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  AA   G+QVH  + R G+ P +F ASALV MY+KCG++E +  +F  + + ++V W 
Sbjct: 211 AGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWN 270

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++I+G+A++    + +  FE + ++G QPD + +V VL+AC H GLVDKG  YF  +  +
Sbjct: 271 AIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTRE 330

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           H ++    HY+C+VD+L R G  HEA ++++KMP      +W SLL  CRIHGNL+LA+ 
Sbjct: 331 HNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEI 390

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
           AA+ LFE+EP+    YV +AN YA++
Sbjct: 391 AAKNLFEMEPDRGGNYVLLANTYAAS 416



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 33/194 (17%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           + SS+I+ C    AL EG++VH+ +  +GF P  F+++ L+DMYAKCG+I +A  LF  +
Sbjct: 202 MISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNI 261

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
           ++++V  +N +ISGF K     +  NLF+EM Q      T M        QP        
Sbjct: 262 EKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQ------TGM--------QP-------- 299

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV-WSALSDMYGK 206
                     ++ T  +VLSA   +  +  G+     + R    S  V+ +S + D+ G+
Sbjct: 300 ----------DEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGR 349

Query: 207 CGSINEARQIFDKM 220
            G ++EA ++  KM
Sbjct: 350 GGLVHEAHELMTKM 363


>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 259/452 (57%), Gaps = 37/452 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    +++   C    AL+ GKK+HS +   G    V ++N LL+MYAK G+   A+ +
Sbjct: 70  PTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIV 129

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M+ R + S+N MIS    GG  + A   F++M +RD  +W +MI+GY ++    EAL
Sbjct: 130 FDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEAL 189

Query: 144 DLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +L+  M   E+S+  ++FTL+S+LSA + I+ L LGK+IH YI+RT FD   VV +AL  
Sbjct: 190 ELFSRM--LEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALIS 247

Query: 203 MYGKCG---------------------------------SINEARQIFDKMVDRDVVSWT 229
           MY K G                                 +I  AR IFD + D DVV+WT
Sbjct: 248 MYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWT 307

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           AMI  Y Q G  ++   LF  + K G RPN+FT A +L+  ++ A+   GKQ+H    R 
Sbjct: 308 AMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRS 367

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEY 348
           G +      +AL+ MY+K G++ ++++VFN + R  D VSWTS+I    Q+G+  +++E 
Sbjct: 368 GENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIEL 427

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE +L  G +PDHI +VGVL+ACTH GLV++G  YF+ +   H +  T  HYAC++DL  
Sbjct: 428 FEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFG 487

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           R+G   EA   I  MP++PD   W SLL  C+
Sbjct: 488 RAGLLQEAFSFIENMPIEPDVIAWGSLLSSCK 519



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 222/451 (49%), Gaps = 77/451 (17%)

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M  +   S+NT+++G+ K G+L +A ++FDE+P RD+ SWT MI GY +  +   A+ ++
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M   +  +  +FT+++V ++ +A+  L +GK+IH ++++ G      V ++L +MY K
Sbjct: 61  VAMMK-DKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAK 119

Query: 207 CGSINEARQIFDK-------------------------------MVDRDVVSWTAMIGRY 235
            G    A+ +FD+                               M +RDVV+W +MI  Y
Sbjct: 120 AGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGY 179

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G  +E   LFS +++  ++P+ FT A +L+ACA+     LGKQ+H Y+ R  +D   
Sbjct: 180 SQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISG 239

Query: 296 FAASALVHMYSKCGNVE---------------------------------NSKKVFNGMP 322
              +AL+ MY+K G VE                                  ++ +F+ + 
Sbjct: 240 VVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLK 299

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D+V+WT++I GY QNG+ D A+E F ++ K G +P+      +L+  ++   ++ G Q
Sbjct: 300 DSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQ 359

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H+   + G   +      ++ + A++G   +A+ V + +    D   W S++     H
Sbjct: 360 -IHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQH 418

Query: 443 GNLDLAKRAAEALFE------IEPENPATYV 467
           G   L + + E LFE      I+P++  TYV
Sbjct: 419 G---LGQESIE-LFEKMLALGIKPDH-ITYV 444



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 185/332 (55%), Gaps = 10/332 (3%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL++  ++      P     +S++  C     L  GK++HS++  + F     + N L
Sbjct: 186 KEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNAL 245

Query: 68  LDMYAKCGNISDAQTLFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
           + MYAK G +  AQ++ ++  + + +V ++  ++ G+ K G++  AR++FD +   D  +
Sbjct: 246 ISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVA 305

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WTAMI GYV+     +A++L+R+M   E    N FTL+++LS  S +  L  GK+IH   
Sbjct: 306 WTAMIVGYVQNGLNDDAMELFRIMAK-EGPRPNSFTLAAMLSVSSNVASLNHGKQIHASA 364

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV-DRDVVSWTAMIGRYFQEGRREEG 244
           +R+G +    V +AL  MY K GSI +A+Q+F+ +  ++D VSWT+MI    Q G  +E 
Sbjct: 365 IRSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQES 424

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVH 303
             LF +++  GI+P+  T+ GVL+AC      E G+     MT I   +P     + ++ 
Sbjct: 425 IELFEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMID 484

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
           ++ + G ++ +      MP  PD+++W SL++
Sbjct: 485 LFGRAGLLQEAFSFIENMPIEPDVIAWGSLLS 516


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 273/469 (58%), Gaps = 37/469 (7%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           K  L +L  I      P  ++Y++L++ C Q   L+EGK VH H+ +S FK  + I N L
Sbjct: 56  KTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSL 115

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L MYA+CG                               SLE AR LFDEMP RD  SWT
Sbjct: 116 LFMYARCG-------------------------------SLEGARRLFDEMPHRDMVSWT 144

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI+GY + ++  +AL L+  M + + +  N+FTLSS++     +     G++IH    +
Sbjct: 145 SMITGYAQNDRASDALLLFPRMLS-DGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWK 203

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G  S+  V S+L DMY +CG + EA  +FDK+  ++ VSW A+I  Y ++G  EE  AL
Sbjct: 204 YGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALAL 263

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  + + G RP  FT++ +L++C+     E GK +H ++ +       +  + L+HMY+K
Sbjct: 264 FVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAK 323

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G++ +++KVF+ + + D+VS  S++ GYAQ+G+  +A + F+ +++ G +P+ I F+ V
Sbjct: 324 SGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSV 383

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTAC+HA L+D+G  YF  +  K+ +     HYA IVDLL R+G   +A+  I +MP++P
Sbjct: 384 LTACSHARLLDEGKHYF-GLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEP 442

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              +W +LLG  ++H N ++   AA+ +FE++P  P T+  +ANIYASA
Sbjct: 443 TVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASA 491


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 272/468 (58%), Gaps = 49/468 (10%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L ++ QI  Q+      P+   Y S+++ C    A + G+++H+ +  +GF+  V++S+ 
Sbjct: 419 LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSV 478

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAK                                G L+ A  +F  + + D  SW
Sbjct: 479 LIDMYAK-------------------------------HGKLDHALKIFRRLKENDVVSW 507

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMI+GY ++++  EAL+L++ MQ+ +   S+    +S +SA + IQ L  G++IH    
Sbjct: 508 TAMIAGYTQHDKFTEALNLFKEMQD-QGIKSDNIGFASAISACAGIQALDQGRQIHAQSC 566

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +G+  D  + +AL  +Y +CG + EA   FD++  +D VSW +++  + Q G  EE   
Sbjct: 567 LSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALN 626

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F+++ K+G+  N+FTF   ++A A+ A   +GKQ+HG + + GYD  +  ++AL+ +Y+
Sbjct: 627 IFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYA 686

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +++             +SW S+I GY+Q+G   +AL+ FE + +    P+H+ FVG
Sbjct: 687 KCGTIDD-------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVG 733

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLVD+G+ YF S+ E H L    +HYAC+VDLL RSG    A+  + +MP++
Sbjct: 734 VLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQ 793

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           PD  +W +LL  C +H N+D+ + AA  L E+EP++ ATYV ++N+YA
Sbjct: 794 PDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYA 841



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 191/406 (47%), Gaps = 55/406 (13%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C +    E GK++H  +   GF    ++ N L+ +Y++ GN                   
Sbjct: 261 CTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGN------------------- 301

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
                       L  A  +F  M QRD  S+ ++ISG  +      AL L++ M N +  
Sbjct: 302 ------------LSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKM-NLDCQ 348

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             +  T++S+LSA +++  L  GK+ H Y ++ G  SD VV  +L D+Y KC  I  A +
Sbjct: 349 KPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHE 408

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            F                 Y Q     + F +F+++   GI PN FT+  +L  C    A
Sbjct: 409 FFLC---------------YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGA 453

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            +LG+Q+H  + + G+    + +S L+ MY+K G ++++ K+F  +   D+VSWT++IAG
Sbjct: 454 TDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAG 513

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q+    +AL  F+ +   G + D+I F   ++AC     +D+G Q    I  +  L+ 
Sbjct: 514 YTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ----IHAQSCLSG 569

Query: 396 TADHYA---CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +D  +    +V L AR G+  EA     ++  K D   W SL+ G
Sbjct: 570 YSDDLSIGNALVSLYARCGKVREAYAAFDQIYAK-DNVSWNSLVSG 614



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 179/373 (47%), Gaps = 36/373 (9%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I  +   G L  A N+FDEMP R    W  + + ++          L+R M   +N   
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLT-KNVEF 161

Query: 158 NKFTLSSVLSAVSA-IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           ++   + VL   S      R  ++IH   + +GF+S   + + L D+Y K G ++ A+++
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F+ +  RD VSW AMI    Q G  EE   LF ++              VL+AC      
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFF 267

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           E GKQ+HG + + G+   ++  +ALV +YS+ GN+ +++++F+ M + D VS+ SLI+G 
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGL 327

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQ G  ++AL  F+ +     +PD +    +L+AC   G +  G Q FHS   K G+T  
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSD 386

Query: 397 ADHYACIVDLLARSGRFHEAED----------------VISKMPMK---PDKFLWASLLG 437
                 ++DL  +      A +                + ++M ++   P++F + S+L 
Sbjct: 387 IVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILK 446

Query: 438 GCRIHGNLDLAKR 450
            C   G  DL ++
Sbjct: 447 TCTTLGATDLGEQ 459



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 183/416 (43%), Gaps = 64/416 (15%)

Query: 28  IYSSLIQFCRQNR-ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           I++ +++ C  N  +    +++H+   +SGF+   FI N L+D+Y               
Sbjct: 165 IFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLY--------------- 209

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                            K G L  A+ +F+ +  RD+ SW AMISG  +     EA+ L+
Sbjct: 210 ----------------FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLF 253

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             +               VLSA + ++    GK++HG +++ GF S+  V +AL  +Y +
Sbjct: 254 CQI---------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSR 298

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G+++ A QIF  M  RD VS+ ++I    Q+G      ALF ++     +P+  T A +
Sbjct: 299 SGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASL 358

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+ACA   A   GKQ H Y  + G         +L+ +Y KC +++ + + F        
Sbjct: 359 LSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF-------- 410

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
                    Y Q    +K+ + F  +   G  P+   +  +L  CT  G  D G Q  H+
Sbjct: 411 -------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQ-IHT 462

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
              K G  +     + ++D+ A+ G+   A  +  ++  + D   W +++ G   H
Sbjct: 463 QVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQH 517


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 258/453 (56%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++S +    ++ +L++GK++H ++   G    VF+ + L+D+Y KC ++  A  +
Sbjct: 172 PDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKI 231

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +    D+                                  TA+ISGYV      +AL
Sbjct: 232 FKQSTNVDI-------------------------------VVCTAIISGYVLNGLNNDAL 260

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +++R +   E    N  TL+SVL A + +  L LGKE+H  I++ G D    V SA+ DM
Sbjct: 261 EIFRWLLE-EKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDM 319

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG ++ A QIF +M ++D V W A+I    Q G+ +E   LF ++ + G+  +  + 
Sbjct: 320 YAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSI 379

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +  L+ACA+  A   GK +H +M +  +D   FA SAL+ MY KCGN+  ++ VF+ M  
Sbjct: 380 SAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMRE 439

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + VSW S+IA Y  +G  + +L  F  +L+ G QPDH+ F+ +L+AC HAG VDKG+QY
Sbjct: 440 KNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQY 499

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  + E++G+    +HYACIVDL  R+GR +EA + I  MP  PD  +W +LLG CR+HG
Sbjct: 500 FRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHG 559

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++LA+ A+  L +++PEN   YV ++N++A A
Sbjct: 560 NVELAEVASRCLLDLDPENSGCYVLLSNVHADA 592



 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 117/348 (33%), Positives = 194/348 (55%), Gaps = 3/348 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           +++I  + + G +E AR LFD+MP +D   W  M++G+V+  +P  A+ ++  M+N +  
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTK 70

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N  T +SVLS  ++      G ++HG ++  GF  D +V +AL  MY K G +++A +
Sbjct: 71  -PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALK 129

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+ M D +VV+W  MI  + Q G  +E   LFSE+I +G+ P++ TFA  L +  + A+
Sbjct: 130 LFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESAS 189

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + GK++HGY+ R G     F  SAL+ +Y KC +V  + K+F      D+V  T++I+G
Sbjct: 190 LKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISG 249

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  NG+ + ALE F  LL+    P+ +    VL AC     ++ G +  H+   KHGL  
Sbjct: 250 YVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLG-KELHANILKHGLDE 308

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                + I+D+ A+ GR   A  +  +MP K D   W +++  C  +G
Sbjct: 309 RRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCSQNG 355



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 221/450 (49%), Gaps = 37/450 (8%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P+   ++S++  C      E G ++H  + S GF     ++N L+ MY+K G +SDA 
Sbjct: 69  TKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDAL 128

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            LF+ M + +V ++N MI+GF + G +++A  LF E           MIS  V       
Sbjct: 129 KLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSE-----------MISAGVS------ 171

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
                           +  T +S L +V+    L+ GKEIHGYI+R G   D  + SAL 
Sbjct: 172 ---------------PDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALI 216

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y KC  +  A +IF +  + D+V  TA+I  Y   G   +   +F  L++  + PNA 
Sbjct: 217 DIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAV 276

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T A VL ACA  A   LGK++H  + + G D      SA++ MY+KCG ++ + ++F  M
Sbjct: 277 TLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRM 336

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P  D V W ++I   +QNG P +A++ F  + + G   D +     L+AC +   +  G 
Sbjct: 337 PEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHG- 395

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           +  HS   K          + ++D+  + G    A  V   M  K ++  W S++     
Sbjct: 396 KAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREK-NEVSWNSIIAAYGS 454

Query: 442 HGNLDLAKRAAEALFE--IEPENPATYVTM 469
           HG+L+++      + E  I+P++  T++T+
Sbjct: 455 HGHLEVSLALFHKMLEDGIQPDH-VTFLTI 483



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF+ DE V S+L  +Y + G I +AR++FDKM ++D V W  M+  + + G       +F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++     +PN+ TFA VL+ CA  A  E G Q+HG +   G+      A+ALV MYSK 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G + ++ K+FN MP  ++V+W  +IAG+ QNG  D+A   F  ++ +G  PD I F   L
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
            + T +  + +G +  H    +HG+       + ++D+
Sbjct: 182 PSVTESASLKQG-KEIHGYILRHGIALDVFLKSALIDI 218



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
           +G++   F  S+L+ +Y++ G +E+++++F+ MP  D V W  ++ G+ + G P+ A++ 
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE +    T+P+ I F  VL+ C    L + G Q  H +    G  +       +V + +
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQ-LHGLVISCGFHFDPLVANALVAMYS 119

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + G+  +A  + + MP   +   W  ++ G   +G +D A
Sbjct: 120 KFGQLSDALKLFNTMP-DTNVVTWNGMIAGFVQNGFMDEA 158


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/455 (39%), Positives = 255/455 (56%), Gaps = 44/455 (9%)

Query: 63  ISNCLLDMYAK--------CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           + N LL +Y K        C  +  A+ LFDEM +RD  ++ TMI+G+ +   L  AR +
Sbjct: 186 VLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREV 245

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F+ M +    +W AMISGYV      EAL L R M+ F     +  T ++++SA + +  
Sbjct: 246 FEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMR-FLGIQFDDITYTTIISACANVGS 304

Query: 175 LRLGKEIHGYIMRTGFDSDEV----VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
            ++GK++H YI++   + +      V +AL  +Y K   ++EAR+IF  M  R++++W A
Sbjct: 305 FQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNA 364

Query: 231 MIGRYFQEGRREE-------------------------------GFALFSELIKSGIRPN 259
           ++  Y   GR EE                               G  LF ++   G  P 
Sbjct: 365 ILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC 424

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            F FAG L AC+   A E G+Q+H  +  +GY+      +A++ MY+KCG VE ++ VF 
Sbjct: 425 DFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFV 484

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            MP  DLVSW S+IA   Q+G   KA+E F+ +LK G  PD I F+ VLTAC+HAGLV+K
Sbjct: 485 TMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEK 544

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G  YF+S+ E +G+T   DHYA +VDL  R+G F  A  VI  MP KP   +W +LL GC
Sbjct: 545 GRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGC 604

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           RIHGN+DL   AAE LF++ P+N  TYV ++NIYA
Sbjct: 605 RIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYA 639



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 230/500 (46%), Gaps = 91/500 (18%)

Query: 29  YSSLIQFC--RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           Y+  +Q C  +   +    + VH+H+ +SGFKP     N LL+MY K  N+  A+ LF+E
Sbjct: 14  YAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEE 73

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALD 144
           +   D  +  T+I+ +   G+LE  R +F+  P   RD+  + AMI+GY        AL+
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-----IHGYIMRTG---------- 189
           L+R M+  ++   + FT +SVLSA+     L +G E     +H  +++TG          
Sbjct: 134 LFRAMRR-DDFRPDDFTFTSVLSAL----VLFVGNEQQCGQMHCAVVKTGMGCVSSSVLN 188

Query: 190 --------------------------FDS----DEVVWSALSDMYGKCGSINEARQIFDK 219
                                     FD     DE+ W+ +   Y +   +N AR++F+ 
Sbjct: 189 ALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEA 248

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           MV+    +W AMI  Y   G  +E   L  ++   GI+ +  T+  +++ACA+  + ++G
Sbjct: 249 MVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMG 308

Query: 280 KQVHGYMTRIGYDP-YSFAAS---ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
           KQ+H Y+ +   +P +SF  S   AL+ +Y K   V+ ++K+F  MP  ++++W ++++G
Sbjct: 309 KQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSG 368

Query: 336 Y-------------------------------AQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y                               AQNG  D+ L+ F+ +   G +P    F
Sbjct: 369 YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAF 428

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
            G LTAC+  G ++ G Q  H+     G   +      ++ + A+ G    AE V   MP
Sbjct: 429 AGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487

Query: 425 MKPDKFLWASLLGGCRIHGN 444
              D   W S++     HG+
Sbjct: 488 -SVDLVSWNSMIAALGQHGH 506



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 173/340 (50%), Gaps = 11/340 (3%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG----VFISNCLLDMYAKCGNISDAQTLF 84
           Y+++I  C    + + GK++H+++  +   P     + +SN L+ +Y K   + +A+ +F
Sbjct: 292 YTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
             M  R++ ++N ++SG+   G +E+A++ F+EMP ++  + T MISG  +     E L 
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 145 LYRMMQ--NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L++ M+   FE      F  +  L+A S +  L  G+++H  ++  G++S   V +A+  
Sbjct: 412 LFKQMRLDGFEPC---DFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMIS 468

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG +  A  +F  M   D+VSW +MI    Q G   +   LF +++K G+ P+  T
Sbjct: 469 MYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRIT 528

Query: 263 FAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F  VL AC+     E G+     M    G  P     + +V ++ + G    ++ V + M
Sbjct: 529 FLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSM 588

Query: 322 P-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           P +P    W +L+AG   +G  D  +E  E L K   Q D
Sbjct: 589 PSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND 628



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 7/253 (2%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N  R++EA     ++   +    + +I    QN   +EG K+   ++  GF+P  F    
Sbjct: 371 NAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAG 430

Query: 67  LLDMYAKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            L   +  G + + + L  ++     E  +   N MIS + K G +E A ++F  MP  D
Sbjct: 431 ALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVD 490

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             SW +MI+   ++   ++A++L+  M   E    ++ T  +VL+A S    +  G+   
Sbjct: 491 LVSWNSMIAALGQHGHGVKAIELFDQMLK-EGVFPDRITFLTVLTACSHAGLVEKGRHYF 549

Query: 183 GYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD-VVSWTAMIGRYFQEGR 240
             ++ + G    E  ++ + D++ + G  + AR + D M  +     W A++      G 
Sbjct: 550 NSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGN 609

Query: 241 REEGFALFSELIK 253
            + G     +L K
Sbjct: 610 MDLGIEAAEQLFK 622



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 96/249 (38%), Gaps = 51/249 (20%)

Query: 256 IRPNAFTFAGVLNACA--DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           IR  A  +A  L  C+  D A+  L + VH +M   G+ P     + L+ MY K  NV  
Sbjct: 7   IRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVY 66

Query: 314 SKKVFNGMPRPDLVSWTSLIA---------------------------------GYAQNG 340
           ++++F  +P PD ++ T+LI                                  GYA NG
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNG 126

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACT------------HAGLVDKGLQYFHSIK 388
               ALE F  + +   +PD   F  VL+A              H  +V  G+    S  
Sbjct: 127 DGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSV 186

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
               L+      +   +L         A  +  +MP K D+  W +++ G   + +L+ A
Sbjct: 187 LNALLSVYVKRAS---ELGIPCSAMVSARKLFDEMP-KRDELTWTTMITGYVRNDDLNGA 242

Query: 449 KRAAEALFE 457
           +   EA+ E
Sbjct: 243 REVFEAMVE 251


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 265/476 (55%), Gaps = 63/476 (13%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           +Q C + ++     ++HS +  +GF     +SN LLD+Y KCG I               
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIP-------------- 55

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                            QA  LFDEMP RD+ SW ++++ + +   P   L +   M   
Sbjct: 56  -----------------QALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTH 98

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           +    + F  + ++ A S++  LRLGK++H   M + F  DEVV S+L DMY KCG  +E
Sbjct: 99  DGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDE 158

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG---------------------------- 244
           AR +FD ++ ++ VSWT+MI  Y + GR+ E                             
Sbjct: 159 ARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHG 218

Query: 245 ---FALFSELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
              F+LF+E+ + GI   +    + V+  CA+ A  ELGKQ+HG +  +G++   F ++A
Sbjct: 219 IYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNA 278

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY+KC ++  +K +F  MPR D++SWTS+I G AQ+G  ++AL  ++ ++ S  +P+
Sbjct: 279 LVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPN 338

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            + FVG+L AC+HAGLV +G + F S+   + +  +  HY C++DLL+RSG   EAE+++
Sbjct: 339 EVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLL 398

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            K+P KPD+  WASLL  C  H NL++  R A+ + +++PE+P+TY+ ++N+YA A
Sbjct: 399 DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGA 454



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 210/412 (50%), Gaps = 12/412 (2%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H    P   +++ +++ C     L  GK+VH+    S F     + + L+DMY KCG   
Sbjct: 98  HDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPD 157

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           +A+ +FD +  ++  S+ +MISG+ + G   +A +LF + P R+ FSWTA+ISG ++   
Sbjct: 158 EARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGH 217

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
            I +  L+  M+     + +   LSSV+   + +  L LGK+IHG ++  GF+S   + +
Sbjct: 218 GIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISN 277

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL DMY KC  I  A+ IF +M  +DV+SWT++I    Q G+ EE   L+ E++ S I+P
Sbjct: 278 ALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKP 337

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKV 317
           N  TF G+L AC+       G+++   MT     +P     + L+ + S+ G+++ ++ +
Sbjct: 338 NEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENL 397

Query: 318 FNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFE--LLLKSGTQPDHIVFVGVLTACTHA 374
            + +P +PD  +W SL++   ++   +  +   +  L LK      +I+   V       
Sbjct: 398 LDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMW 457

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           G V K  +   S++ +    Y++      +D    S  FH  E      PMK
Sbjct: 458 GSVSKVRKLMSSMEVRKEPGYSS------IDFGKDSQVFHAGESC--DHPMK 501



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 42/216 (19%)

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N   F   L  CA   +     ++H  + + G+D  S  ++ L+ +Y KCG +  + ++F
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLV 377
           + MP  D VSW S++  + +  +P + L     +    G QPDH VF  ++ AC+  G +
Sbjct: 62  DEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYL 121

Query: 378 DKGLQ-----------------------------------YFHSIKEKHGLTYTADHYAC 402
             G Q                                    F SI  K+ +++T+     
Sbjct: 122 RLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTS----- 176

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           ++   ARSGR  EA D+  + P++ + F W +L+ G
Sbjct: 177 MISGYARSGRKCEAMDLFLQAPVR-NLFSWTALISG 211


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 287/478 (60%), Gaps = 5/478 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      L++A  +  +I+ P    ++++I  C  +       ++   +  SG  P +
Sbjct: 153 VDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNM 212

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDE 117
           F  +  L   A        + L   + + D+ S +     +I  ++K  S++ AR +F  
Sbjct: 213 FTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKL 272

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+RD  +W A+ISG+ +  +  EA  L+ +M   E    N+ TLS+VL +++A+Q   +
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT-EGIGFNQTTLSTVLKSIAALQANYM 331

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            ++IH   +++GF+ D  V ++L D YGKCG + +A ++F++    D+V +T+++  Y Q
Sbjct: 332 CRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQ 391

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G+ EE   L+ E+   GI+P++F  + +LNACA  +A E GKQVH ++ + G+    FA
Sbjct: 392 DGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFA 451

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++LV+MY+KCG++E++   F+ +P   +VSW+++I G AQ+G   +AL+ F+ +LK G 
Sbjct: 452 GNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGV 511

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI  V VL AC HAGLV +   YF+S+K   G+    +HYAC++DLL R+G+   A 
Sbjct: 512 PPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAM 571

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           ++++KMP + +  +W +LLG  RIH N+DL ++AAE L  +EPE   T+V +ANIYAS
Sbjct: 572 ELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYAS 629



 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 137/465 (29%), Positives = 231/465 (49%), Gaps = 45/465 (9%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA+ + H +      P+    SS+I  C       +G+K+H +L   G+    F +N L+
Sbjct: 94  EAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALV 153

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAK                                G LE A ++FDE+ + D  SW A
Sbjct: 154 DMYAKV-------------------------------GILEDASSVFDEIAKPDIVSWNA 182

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I+G V +     AL+L R M N      N FTLSS L A + +    LG+++H  +++ 
Sbjct: 183 IIAGCVLHEYHHRALELLREM-NKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM 241

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
              SD  +   L DMY KC S+++AR +F  M +RD+++W A+I  + Q    EE  +LF
Sbjct: 242 DMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLF 301

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             +   GI  N  T + VL + A   A  + +Q+H    + G++  ++  ++L+  Y KC
Sbjct: 302 PLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKC 361

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+VE++ +VF   P  DLV +TSL+  YAQ+G  ++AL  +  +   G +PD  V   +L
Sbjct: 362 GHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLL 421

Query: 369 TACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPM 425
            AC      ++G Q + H +K      + +D +A   +V++ A+ G   +A    S++P+
Sbjct: 422 NACASLSAYEQGKQVHVHILK----FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPV 477

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE-PENPATYVTM 469
           +     W++++GG   HG    A +  + + ++  P N  T V++
Sbjct: 478 R-GIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSV 521



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 205/410 (50%), Gaps = 38/410 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S+++ C   + L  GK+VH  +  +GF    F++N L+ +YAKCG   DA        
Sbjct: 13  FPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA-------- 64

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  R+LFD +P R   SW A+ S YV  +   EA+ L+  
Sbjct: 65  -----------------------RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHD 101

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M        N+F+LSS+++  + ++    G++IHGY+++ G+DSD    +AL DMY K G
Sbjct: 102 MV-LSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVG 160

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +A  +FD++   D+VSW A+I              L  E+ KSG+ PN FT +  L 
Sbjct: 161 ILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALK 220

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA  A  ELG+Q+H  + ++     SF    L+ MYSKC ++++++ VF  MP  D+++
Sbjct: 221 ACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA 280

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W ++I+G++QN   ++A   F L+   G   +      VL +   A   +   +  H++ 
Sbjct: 281 WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA-ALQANYMCRQIHALS 339

Query: 389 EKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            K G  +  D+Y    ++D   + G   +A  V  + P+  D  L+ SL+
Sbjct: 340 LKSGFEF--DNYVVNSLIDTYGKCGHVEDATRVFEESPI-VDLVLFTSLV 386



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 158/281 (56%), Gaps = 2/281 (0%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N+F   SVL A +  + L LGK++HG ++ TGFDSDE V ++L  +Y KCG   +AR +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D + DR VVSW A+   Y       E  +LF +++ SGIRPN F+ + ++N C       
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+++HGY+ ++GYD  +F+A+ALV MY+K G +E++  VF+ + +PD+VSW ++IAG  
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +    +ALE    + KSG  P+       L AC    L + G Q  HS   K  +   +
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQ-LHSSLIKMDMGSDS 247

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                ++D+ ++     +A  V   MP + D   W +++ G
Sbjct: 248 FLGVGLIDMYSKCNSMDDARLVFKLMPER-DMIAWNAVISG 287



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 17/210 (8%)

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI+ N F F  VL AC       LGKQVHG +   G+D   F A++LV +Y+KCG   ++
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + +F+ +P   +VSW +L + Y  + M  +A+  F  ++ SG +P+      ++  CT  
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT-- 122

Query: 375 GLVDKGLQYFHSIKEKHG----LTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPD 428
                GL+     ++ HG    L Y +D ++   +VD+ A+ G   +A  V  ++  KPD
Sbjct: 123 -----GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPD 176

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
              W +++ GC +H   +   RA E L E+
Sbjct: 177 IVSWNAIIAGCVLH---EYHHRALELLREM 203


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 266/478 (55%), Gaps = 39/478 (8%)

Query: 36  CRQNRALE---EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           C  +R L    +GK++H+     GF+  + + N LLDMYAK G++  A+ +F+ + +  V
Sbjct: 258 CDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSV 317

Query: 93  CSYNTMISGF-----------------------------------TKGGSLEQARNLFDE 117
            S+N MISG+                                    K G ++  R +FD 
Sbjct: 318 VSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDC 377

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M      SW A++SGY +     EA++L+R MQ F+    ++ TL+ +LS+ + +  L  
Sbjct: 378 MSSPSLISWNAILSGYNQSADHGEAVELFRKMQ-FQWQNPDRTTLAIILSSCAELGLLEA 436

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK++H    + GF  D  V S+L ++Y KCG +  ++ +F K+ + DVV W +MI  +  
Sbjct: 437 GKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSI 496

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               ++  A F  + + G  P+ F+FA + ++CA  ++   G+Q+H  + + GY    F 
Sbjct: 497 NSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFV 556

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            S+LV MY KCG+V  ++  F+ MP  ++V+W  +I GYA NG   +A+  ++ ++ SG 
Sbjct: 557 GSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGE 616

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD I FV VLTAC+H+ LVD+G++ F S+ +K  +    DHY CI+D L R GRF+E E
Sbjct: 617 KPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVE 676

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            ++  MP K D  +W  +L  CR+H N+ LAKRAAE L  + P N A YV +AN+Y+S
Sbjct: 677 VILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSS 734



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 232/436 (53%), Gaps = 20/436 (4%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           +L+Q C  N++L   K +H+ +         F+ N L+D+Y+KC  I+ A  +FD++  +
Sbjct: 10  NLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHK 69

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           ++ SYN ++S F K  +L+ A  LF +MP+R+  S   +I+  V+     +ALD Y +M 
Sbjct: 70  NIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMM 129

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
            +E+   +  T ++V SA   ++ +  G+  HG +++ GFDS+  V +AL  MY KCG  
Sbjct: 130 VYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLN 189

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A ++F+ +V+ + V++T M+G   Q  + +EG  LF  +++ GI  ++ + + +L  C
Sbjct: 190 EDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVIC 249

Query: 271 ADH------------AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           A              +    GKQ+H    + G++      ++L+ MY+K G++++++ VF
Sbjct: 250 AKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVF 309

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
             + +  +VSW  +I+GY      +KALE F+ +   G +PD + ++ +LTAC  +G V 
Sbjct: 310 ENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVK 369

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK---PDKFLWASL 435
            G Q F  +     +++ A     I+    +S    EA ++  KM  +   PD+   A +
Sbjct: 370 VGRQIFDCMSSPSLISWNA-----ILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAII 424

Query: 436 LGGCRIHGNLDLAKRA 451
           L  C   G L+  K+ 
Sbjct: 425 LSSCAELGLLEAGKQV 440



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 188/428 (43%), Gaps = 57/428 (13%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L ++++   PS   ++++   C   + +  G++ H  +   GF   +++SN LL MY KC
Sbjct: 127 LMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKC 186

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G   DA  +F+ + E +  ++ TM+ G ++   +++   LF  M               +
Sbjct: 187 GLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLM---------------L 231

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           R    ++++ L  ++      VS       V      +     GK+IH   ++ GF+ D 
Sbjct: 232 RKGICVDSVSLSTILVICAKGVS-----FGVCDDSRGLSTNAQGKQIHTLAVKHGFERDL 286

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            + ++L DMY K G ++ A  +F+ +    VVSW  MI  Y      E+    F  +   
Sbjct: 287 HLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCC 346

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G  P+  T+  +L AC                                    K G+V+  
Sbjct: 347 GYEPDDVTYINMLTACV-----------------------------------KSGDVKVG 371

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +++F+ M  P L+SW ++++GY Q+    +A+E F  +      PD      +L++C   
Sbjct: 372 RQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAEL 431

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GL++ G Q  H++ +K G        + ++++ ++ G+   ++ V SK+  + D   W S
Sbjct: 432 GLLEAGKQ-VHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLS-ELDVVCWNS 489

Query: 435 LLGGCRIH 442
           ++ G  I+
Sbjct: 490 MIAGFSIN 497



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 167/345 (48%), Gaps = 37/345 (10%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           Q  +P  +  + ++  C +   LE GK+VH+  +  GF   V++++ L+++Y+KCG +  
Sbjct: 412 QWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEV 471

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           ++ +F ++ E DV  +N+MI+GF+   SLEQ                             
Sbjct: 472 SKHVFSKLSELDVVCWNSMIAGFSI-NSLEQ----------------------------- 501

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            +AL  ++ M+ F     ++F+ +++ S+ + +  L  G++IH  I++ G+  +  V S+
Sbjct: 502 -DALACFKRMRQF-GFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSS 559

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L +MY KCG +  AR  FD M  +++V+W  MI  Y   G   E  +L+ ++I SG +P+
Sbjct: 560 LVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPD 619

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
             TF  VL AC+  A  + G ++   M  +    P     + ++    + G     + + 
Sbjct: 620 DITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVIL 679

Query: 319 NGMP-RPDLVSWTSLIAG---YAQNGMPDKALEYFELLLKSGTQP 359
           + MP + D + W  +++    +A   +  +A E    L    + P
Sbjct: 680 DTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAP 724



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 168/360 (46%), Gaps = 57/360 (15%)

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
             L ++L +    + L   K IH  I R    SD  + + L D+Y KC  I  A  +FDK
Sbjct: 6   LNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDK 65

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALF---------------SELIKSG--------- 255
           +  +++ S+ A++  + +    +    LF               + ++K+G         
Sbjct: 66  IPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTY 125

Query: 256 --------IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
                   ++P+  TFA V +AC        G++ HG + ++G+D   + ++AL+ MY+K
Sbjct: 126 DLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTK 185

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG  E++ +VF G+  P+ V++T+++ G +Q     + LE F L+L+ G   D +    +
Sbjct: 186 CGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTI 245

Query: 368 LTACTHA---GLVD--KGL------QYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFH 414
           L  C      G+ D  +GL      +  H++  KHG  +  D + C  ++D+ A++G   
Sbjct: 246 LVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHG--FERDLHLCNSLLDMYAKTGDMD 303

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI-----EPENPATYVTM 469
            AE+V   +  K     W  ++ G   +GN   +++A E    +     EP++  TY+ M
Sbjct: 304 SAENVFENLD-KHSVVSWNIMISG---YGNRCDSEKALECFQRMQCCGYEPDD-VTYINM 358


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 267/467 (57%), Gaps = 36/467 (7%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF- 102
           +GK++H+     GF+  + + N LLDMYAK G++  A+ +F  +    V S+N MI+G+ 
Sbjct: 267 QGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYG 326

Query: 103 ----------------------------------TKGGSLEQARNLFDEMPQRDNFSWTA 128
                                              K G +   R +FD MP     SW A
Sbjct: 327 NRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCPSLTSWNA 386

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           ++SGY +     EA++L+R MQ F+    ++ TL+ +LS+ + +  L  GKE+H    + 
Sbjct: 387 ILSGYNQNADHREAVELFRKMQ-FQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKF 445

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF  D  V S+L ++Y KCG +  ++ +F K+ + DVV W +M+  +      ++  + F
Sbjct: 446 GFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFF 505

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++ + G  P+ F+FA V+++CA  ++   G+Q H  + + G+    F  S+L+ MY KC
Sbjct: 506 KKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKC 565

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+V  ++  F+ MP  + V+W  +I GYAQNG    AL  +  ++ SG +PD I +V VL
Sbjct: 566 GDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVL 625

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           TAC+H+ LVD+GL+ F+++ +K+G+     HY CI+D L+R+GRF+E E ++  MP K D
Sbjct: 626 TACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDD 685

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             +W  +L  CRIH NL LAKRAAE L+ ++P+N A+YV +AN+Y+S
Sbjct: 686 AVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNSASYVLLANMYSS 732



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 227/438 (51%), Gaps = 19/438 (4%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           ++L+Q C  N+A   GK VH+ L         F+SN  +++Y+KC +I+ A  +FD +  
Sbjct: 10  ANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPH 69

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           +++ S+N +++ + K  +L+ A  LF +MPQR+  S   +IS  VR     +ALD Y  +
Sbjct: 70  KNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSV 129

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
              +  + +  T ++V SA  ++     G+  HG +++ G +S+  V +AL  MY KCG 
Sbjct: 130 M-LDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGL 188

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
             +A ++F  + + + V++T M+G   Q  + +E   LF  +++ GIR ++ + + +L  
Sbjct: 189 NADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGV 248

Query: 270 CADH----------AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           CA            +    GKQ+H    ++G++      ++L+ MY+K G++++++KVF 
Sbjct: 249 CAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFV 308

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            + R  +VSW  +IAGY      +KA EY + +   G +PD + ++ +LTAC  +G V  
Sbjct: 309 NLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRT 368

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK---PDKFLWASLL 436
           G Q F  +      ++ A     I+    ++    EA ++  KM  +   PD+   A +L
Sbjct: 369 GRQIFDCMPCPSLTSWNA-----ILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVIL 423

Query: 437 GGCRIHGNLDLAKRAAEA 454
             C   G L+  K    A
Sbjct: 424 SSCAELGFLEAGKEVHAA 441



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 207/460 (45%), Gaps = 48/460 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS   ++++   C      + G++ H  +   G +  +++ N LL MYAKCG  +DA  +
Sbjct: 136 PSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRV 195

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQP 139
           F ++ E +  ++ TM+ G  +   +++A  LF  M ++    D+ S ++M+    +  + 
Sbjct: 196 FRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERD 255

Query: 140 I--------------------------------EALDLYRMMQNFENSVSNKFTLSSVLS 167
           +                                  LD+Y  + + + S    F   +  S
Sbjct: 256 VGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMD-SAEKVFVNLNRHS 314

Query: 168 AVS-AIQCLRLGKEIHG-----YIMRT---GFDSDEVVWSALSDMYGKCGSINEARQIFD 218
            VS  I     G   +      Y+ R    G++ D+V +  +     K G +   RQIFD
Sbjct: 315 VVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFD 374

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            M    + SW A++  Y Q     E   LF ++      P+  T A +L++CA+    E 
Sbjct: 375 CMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEA 434

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           GK+VH    + G+    + AS+L+++YSKCG +E SK VF+ +P  D+V W S++AG++ 
Sbjct: 435 GKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSI 494

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           N +   AL +F+ + + G  P    F  V+++C     + +G Q FH+   K G      
Sbjct: 495 NSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQG-QQFHAQIVKDGFLDDIF 553

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             + ++++  + G  + A      MP + +   W  ++ G
Sbjct: 554 VGSSLIEMYCKCGDVNGARCFFDVMPGR-NTVTWNEMIHG 592



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 163/329 (49%), Gaps = 38/329 (11%)

Query: 12  KEALQILH----QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA+++      Q  HP  +  + ++  C +   LE GK+VH+  +  GF   V++++ L
Sbjct: 398 REAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSL 457

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +++Y+KCG +  ++ +F ++ E DV  +N+M++GF+     + A + F +M Q   F   
Sbjct: 458 INVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFF--- 514

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         ++F+ ++V+S+ + +  L  G++ H  I++
Sbjct: 515 -----------------------------PSEFSFATVVSSCAKLSSLFQGQQFHAQIVK 545

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF  D  V S+L +MY KCG +N AR  FD M  R+ V+W  MI  Y Q G       L
Sbjct: 546 DGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCL 605

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV-HGYMTRIGYDPYSFAASALVHMYS 306
           ++++I SG +P+  T+  VL AC+  A  + G ++ +  + + G  P     + ++   S
Sbjct: 606 YNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLS 665

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
           + G     + + + MP + D V W  +++
Sbjct: 666 RAGRFNEVEVILDAMPCKDDAVVWEVVLS 694



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 52/338 (15%)

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK +H  + R    SD  + +   ++Y KC  I  A  +FD +  +++ SW A++  Y +
Sbjct: 25  GKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCK 84

Query: 238 E-------------------------------GRREEGFALFSELIKSGIRPNAFTFAGV 266
                                           G   +    +  ++  G+ P+  TFA V
Sbjct: 85  ARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATV 144

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
            +AC      + G++ HG + ++G +   +  +AL+ MY+KCG   ++ +VF  +P P+ 
Sbjct: 145 FSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNE 204

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT---------HAGLV 377
           V++T+++ G AQ     +A E F L+L+ G + D +    +L  C          H    
Sbjct: 205 VTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGIST 264

Query: 378 DKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           +   +  H++  K G  +  D + C  ++D+ A+ G    AE V   +  +     W  +
Sbjct: 265 NAQGKQMHTLSVKLG--FERDLHLCNSLLDMYAKIGDMDSAEKVFVNLN-RHSVVSWNIM 321

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTM 469
           + G   +GN   +++AAE L  ++ +    +  TY+ M
Sbjct: 322 IAG---YGNRCNSEKAAEYLQRMQSDGYEPDDVTYINM 356



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 33/213 (15%)

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +  +   A ++  C  + A   GK VH  + R+     +F ++  + +YSKC ++ ++  
Sbjct: 3   KSKSLNLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACH 62

Query: 317 VFNGMPRPDLVSWTSLIAGY--AQN-----------------------------GMPDKA 345
           VF+ +P  ++ SW +++A Y  A+N                             G   +A
Sbjct: 63  VFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQA 122

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L+ ++ ++  G  P HI F  V +AC      D G +  H +  K GL         ++ 
Sbjct: 123 LDTYDSVMLDGVIPSHITFATVFSACGSLLDADCG-RRTHGVVIKVGLESNIYVVNALLC 181

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           + A+ G   +A  V   +P +P++  + +++GG
Sbjct: 182 MYAKCGLNADALRVFRDIP-EPNEVTFTTMMGG 213


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 278/479 (58%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+    R +++A  +  ++       ++ +I    +     E   +   ++  G  P  
Sbjct: 72  VDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDK 131

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDE 117
                ++   AK G +  A+ + D +Q +    DV     MI  + K G +E AR +FD 
Sbjct: 132 VAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDR 191

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +++  SW+AMI+ Y  + Q  +ALDL+RMM +    + +K TL+S+L A S ++ L++
Sbjct: 192 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDKITLASLLYACSDLKNLQM 250

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+ IH  + + G D D  V +AL DMYGKC  I +AR +FDKM +RD+V+WT MIG Y +
Sbjct: 251 GRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAE 310

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   E   LF ++ + G+ P+      V+ ACA   A    + +  Y+ R  +      
Sbjct: 311 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 370

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +A++ M++KCG VE+++++F+ M   +++SW+++IA Y  +G   KAL+ F ++L+SG 
Sbjct: 371 GTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGI 430

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+ I  V +L AC+HAGLV++GL++F  + E + +     HY C+VDLL R+GR  EA 
Sbjct: 431 LPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEAL 490

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +I  M ++ D+ LW + LG CR H ++ LA++AA +L E++P+NP  Y+ ++NIYA+A
Sbjct: 491 KLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANA 549



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           M+ G+ +    I     +R +        N +TL  V+ A   ++ L++G+ IH  + + 
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDN-YTLPFVIRACRDLKNLQMGRLIHHIVYKF 59

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G D D  V +AL DMY KC  I +AR +FDKM +RD+V+WT MIG Y + G+  E   LF
Sbjct: 60  GLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++ + G+ P+      V+ ACA   A    + +  Y+ R  +       +A++ MY+KC
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G VE+++++F+ M   +++SW+++IA Y  +G   KAL+ F ++L SG  PD I    +L
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMK 426
            AC+    +  G +  H I  K GL    DH+ C  +VD+  +     +A  +  KMP +
Sbjct: 240 YACSDLKNLQMG-RLIHHIVYKFGLDL--DHFVCAALVDMYGKCREIEDARFLFDKMPER 296

Query: 427 PDKFLWASLLGGCRIHGN 444
            D   W  ++GG    GN
Sbjct: 297 -DLVTWTVMIGGYAECGN 313


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 263/454 (57%), Gaps = 33/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL+        L+ G+KVH  +  +G +    +   L+ MYAKCG+IS     
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDIS----- 200

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                     +AR +FD +P+++  +WT +I+GY +  Q   AL
Sbjct: 201 --------------------------KARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVAL 234

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L   MQ  E +  NK T +S+L   +    L  GK++H YI+++G+  +  V ++L  M
Sbjct: 235 ELLETMQQAEVA-PNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITM 293

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + EAR++F  +  RDVV+WTAM+  Y Q G  +E   LF  + + GI+P+  TF
Sbjct: 294 YCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTF 353

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL +C+  A  + GK++H  +   GY+   +  SALV MY+KCG+++++  VFN M  
Sbjct: 354 TSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSE 413

Query: 324 PDLVSWTSLIAGY-AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
            ++V+WT++I G  AQ+G   +ALEYF+ + K G +PD + F  VL+ACTH GLV++G +
Sbjct: 414 RNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRK 473

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +F S+   +G+    +HY+C VDLL R+G   EAE+VI  MP  P   +W +LL  CR+H
Sbjct: 474 HFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVH 533

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +++  +RAAE + +++P++   YV +++IYA+A
Sbjct: 534 SDVERGERAAENVLKLDPDDDGAYVALSSIYAAA 567



 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 241/444 (54%), Gaps = 42/444 (9%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSS----LIQFCRQNRALEEGKKVHSHLKSSGF 57
           + +LC   RLKEAL I++ +      +YS     L+Q C + R+LE+G++VH+ +  SG 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +P  ++ N LL MYAKC                               GSL  AR +FD 
Sbjct: 79  QPNRYLENTLLSMYAKC-------------------------------GSLTDARRVFDS 107

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R+  SWTAMI  +V  N+ +EA   Y  M+       +K T  S+L+A +  + L+L
Sbjct: 108 IRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMK-LAGCKPDKVTFVSLLNAFTNPELLQL 166

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+++H  I+  G + +  V ++L  MY KCG I++AR IFD++ +++VV+WT +I  Y Q
Sbjct: 167 GQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQ 226

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G+ +    L   + ++ + PN  TFA +L  C   AA E GK+VH Y+ + GY    + 
Sbjct: 227 QGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV 286

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++L+ MY KCG +E ++K+F+ +P  D+V+WT+++ GYAQ G  D+A+  F  + + G 
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHE 415
           +PD + F  VLT+C+    + +G +    +       Y  D Y  + +V + A+ G   +
Sbjct: 347 KPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA---GYNLDVYLQSALVSMYAKCGSMDD 403

Query: 416 AEDVISKMPMKPDKFLWASLLGGC 439
           A  V ++M  + +   W +++ GC
Sbjct: 404 ASLVFNQMSER-NVVAWTAIITGC 426



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 118/234 (50%), Gaps = 3/234 (1%)

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           + GR +E   + + +I  G R  +  F G+L  CA   + E G++VH  + + G  P  +
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             + L+ MY+KCG++ ++++VF+ +   ++VSWT++I  +       +A + +E +  +G
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD + FV +L A T+  L+  G +    I E  GL         +V + A+ G   +A
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEA-GLELEPRVGTSLVGMYAKCGDISKA 202

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE-PENPATYVTM 469
             +  ++P K +   W  L+ G    G +D+A    E + + E   N  T+ ++
Sbjct: 203 RVIFDRLPEK-NVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASI 255



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 2   IDILCNQRRLKEALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKP 59
           +D+L     L+EA  ++  +   P PS++ +L+  CR +  +E G++   + LK      
Sbjct: 495 VDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDD 554

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           G +++  L  +YA  G   DA+ +   M++RDV
Sbjct: 555 GAYVA--LSSIYAAAGRYEDAEKVRQVMEKRDV 585


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/498 (34%), Positives = 278/498 (55%), Gaps = 60/498 (12%)

Query: 5   LCNQRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    L+ A+++++Q   P   +  Y S++Q C   +++++G+++HS ++S+  +    
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV 137

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS--------------- 107
           + + L+ MY  CG++ + + +FD++    V  +N +++G+ K G+               
Sbjct: 138 LGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG 197

Query: 108 ---LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM------QNFENSVSN 158
              +E AR LFDE+  RD  SW +MISGYV      + LDL+  M       +    VS 
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           + TL++                                   L DMY K G++N A Q+F+
Sbjct: 258 ELTLNN----------------------------------CLLDMYSKSGNLNSAIQVFE 283

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            M +R VVSWT+MI  Y +EG  +    LF E+ K  + PN+ T A +L ACA  AA E 
Sbjct: 284 TMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALER 343

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G+++HG++ R G+      A+ALV MY KCG +  ++ +F+ +P  DLVSWT +IAGY  
Sbjct: 344 GQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGM 403

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +G   +A+  F  +  SG +PD + F+ +L AC+H+GL+D+G  +F+ ++    +   ++
Sbjct: 404 HGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSE 463

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HYACIVDLLAR+G   +A   I  MP++PD  +W +LL GCRI+ ++ LA++ AE +FE+
Sbjct: 464 HYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFEL 523

Query: 459 EPENPATYVTMANIYASA 476
           EPEN   YV +ANIYA A
Sbjct: 524 EPENTGYYVLLANIYAEA 541



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 168/397 (42%), Gaps = 59/397 (14%)

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           ++Y  C  I  +  L  E  +  +  YN  I  F + G+L +A  L ++ P+ D      
Sbjct: 46  NLYHSCATIGTS-VLPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKPD------ 98

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                         L+L               T  SVL   + ++ ++ G+ IH  I   
Sbjct: 99  --------------LELR--------------TYCSVLQLCADLKSIQDGRRIHSIIQSN 130

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
             + D V+ S L  MY  CG + E R+IFDK+ +  V  W  ++  Y + G   E  +LF
Sbjct: 131 DVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLF 190

Query: 249 SELIKSGIR--------------PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY--D 292
             + + GIR               +  ++  +++    +   E G  +   M  +G   D
Sbjct: 191 KRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTD 250

Query: 293 PYSFAA------SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
             +  +      + L+ MYSK GN+ ++ +VF  M    +VSWTS+IAGYA+ G+ D ++
Sbjct: 251 LATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSV 310

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             F  + K    P+ I    +L AC     +++G Q  H    ++G +        +VD+
Sbjct: 311 RLFHEMEKEDLFPNSITMACILPACASLAALERG-QEIHGHILRNGFSLDRHVANALVDM 369

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             + G    A  +   +P K D   W  ++ G  +HG
Sbjct: 370 YLKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMHG 405


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 271/491 (55%), Gaps = 40/491 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   +  +L + C +  A + GK++H     SG     F+   +  MY +CG + DA+ +
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKV 173

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQP 139
           FD M ++DV + + ++  + + G LE+   +  EM     + +  SW  ++SG+ R    
Sbjct: 174 FDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYH 233

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            EA+ +++ + +      ++ T+SSVL +V   + L +G+ IHGY+++ G   D+ V SA
Sbjct: 234 KEAVVMFQKIHHL-GFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISA 292

Query: 200 LSDMYGKCGSINEARQIFDK--------------------MVDR---------------D 224
           + DMYGK G +     +F++                    +VD+               +
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELN 352

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           VVSWT++I    Q G+  E   LF E+  +G++PN  T   +L AC + AA   G+  HG
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           +  R+         SAL+ MY+KCG +  S+ VFN MP  +LV W SL+ G++ +G   +
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKE 472

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
            +  FE L+++  +PD I F  +L+AC   GL D+G +YF  + E++G+    +HY+C+V
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMV 532

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           +LL R+G+  EA D+I +MP +PD  +W +LL  CR+  N+DLA+ AAE LF +EPENP 
Sbjct: 533 NLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPG 592

Query: 465 TYVTMANIYAS 475
           TYV ++NIYA+
Sbjct: 593 TYVLLSNIYAA 603



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 197/467 (42%), Gaps = 104/467 (22%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG 106
           + H+ +  SG +   +IS  L+  Y+     +DA  +   + +  + S++++I   TK  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
              Q+  +F  M     FS   +   +V                     + N F + + L
Sbjct: 96  LFTQSIGVFSRM-----FSHGLIPDSHV---------------------LPNLFKVCAEL 129

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
           SA       ++GK+IH     +G D D  V  ++  MY +CG + +AR++FD+M D+DVV
Sbjct: 130 SA------FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVV 183

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIR----------------------------- 257
           + +A++  Y ++G  EE   + SE+  SGI                              
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243

Query: 258 ------PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
                 P+  T + VL +  D     +G+ +HGY+ + G        SA++ MY K G+V
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303

Query: 312 ENSKKVFN---------------GMPRPDL--------------------VSWTSLIAGY 336
                +FN               G+ R  L                    VSWTS+IAG 
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQNG   +ALE F  +  +G +P+H+    +L AC +   +  G +  H    +  L   
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDN 422

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               + ++D+ A+ GR + ++ V + MP K +   W SL+ G  +HG
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 273/454 (60%), Gaps = 30/454 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    YSS++  C +   L  GK++HS +   G    V +   L+DMYAKC         
Sbjct: 229 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCA-------- 280

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ-PIEA 142
                                 GS++ +R +F++MP+ +  SWTA+I+ YV+  +   EA
Sbjct: 281 --------------------ADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEA 320

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           ++L+  M +  +   N F+ SSVL A   +     G++++ Y ++ G  S   V ++L  
Sbjct: 321 IELFCKMIS-GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 379

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY + G + +AR+ FD + ++++VS+ A++  Y +  + EE F LF+E+  +GI  +AFT
Sbjct: 380 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 439

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           FA +L+  A   A   G+Q+HG + + GY       +AL+ MYS+CGN+E + +VFN M 
Sbjct: 440 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 499

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +++SWTS+I G+A++G   +ALE F  +L++GT+P+ I +V VL+AC+H G++ +G +
Sbjct: 500 DRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK 559

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +F+S+ ++HG+    +HYAC+VDLL RSG   EA + I+ MP+  D  +W +LLG CR+H
Sbjct: 560 HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVH 619

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           GN +L + AAE + E EP++PA Y+ ++N++ASA
Sbjct: 620 GNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 653



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 212/418 (50%), Gaps = 44/418 (10%)

Query: 10  RLKEALQIL----HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           RL  A   L     Q + P  + YS L++ C + R  + GK VH  L  SG +    + N
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 66  CLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
            L+ +Y+KCG+   A+ +F+ M  +RD+ S++ M+S F       QA   F +M +    
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE---- 121

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                             L  Y           N++  ++V+ A S      +G+ I+G+
Sbjct: 122 ------------------LGFY----------PNEYCFAAVIRACSNANYAWVGEIIYGF 153

Query: 185 IMRTGF-DSDEVVWSALSDMYGK-CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           +++TG+ ++D  V   L DM+ K  G +  A ++FDKM +R++V+WT MI R+ Q G   
Sbjct: 154 VVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCAR 213

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   LF ++  SG  P+ FT++ VL+AC +     LGKQ+H  + R+G         +LV
Sbjct: 214 DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 273

Query: 303 HMYSKC---GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK-ALEYFELLLKSGTQ 358
            MY+KC   G+V++S+KVF  MP  +++SWT++I  Y Q+G  DK A+E F  ++    +
Sbjct: 274 DMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIR 333

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
           P+H  F  VL AC +      G Q + S   K G+         ++ + ARSGR  +A
Sbjct: 334 PNHFSFSSVLKACGNLSDPYTGEQVY-SYAVKLGIASVNCVGNSLISMYARSGRMEDA 390



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 199/413 (48%), Gaps = 44/413 (10%)

Query: 12  KEALQILHQI--SHPSPS--IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++  ++   H  P+   +SS+++ C        G++V+S+    G      + N L
Sbjct: 318 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 377

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+ G + DA+  FD + E+++ SYN ++ G+ K    E+A  LF+E+         
Sbjct: 378 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT------ 431

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                       I A                 FT +S+LS  ++I  +  G++IHG +++
Sbjct: 432 ---------GIGISA-----------------FTFASLLSGAASIGAMGKGEQIHGRLLK 465

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G+ S++ + +AL  MY +CG+I  A Q+F++M DR+V+SWT+MI  + + G       +
Sbjct: 466 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 525

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           F +++++G +PN  T+  VL+AC+       G++    M +  G  P     + +V +  
Sbjct: 526 FHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLG 585

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVF 364
           + G +  + +  N MP   D + W +L+     +G  +      E++L+   +PD    +
Sbjct: 586 RSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAY 643

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           + +      AG     ++   S+KE++ +      +   +++  R  RFH  E
Sbjct: 644 ILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW---IEVENRVHRFHVGE 693



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           GR    F+    + +    P+  T++ +L +C      +LGK VH  + + G +  S   
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 299 SALVHMYSKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           + L+ +YSKCG+ E ++ +F GM  + DLVSW+++++ +A N M  +A+  F  +L+ G 
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC-IVDLLAR-SGRFHE 415
            P+   F  V+ AC++A     G +  +    K G         C ++D+  + SG    
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 416 AEDVISKMPMK----------------------------------PDKFLWASLLGGCRI 441
           A  V  KMP +                                  PD+F ++S+L  C  
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 442 HGNLDLAKR 450
            G L L K+
Sbjct: 244 LGLLALGKQ 252



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +D      + +EA  + ++I+     I    ++SL+       A+ +G+++H  L   G+
Sbjct: 409 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 468

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           K    I N L+ MY++CGNI  A  +F+EM++R+V S+ +MI+GF K G   +A  +F +
Sbjct: 469 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 528

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +                 +P                  N+ T  +VLSA S +  +  
Sbjct: 529 MLETG--------------TKP------------------NEITYVAVLSACSHVGMISE 556

Query: 178 G-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRY 235
           G K  +      G       ++ + D+ G+ G + EA +  + M +  D + W  ++G  
Sbjct: 557 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 616

Query: 236 FQEGRREEG 244
              G  E G
Sbjct: 617 RVHGNTELG 625


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 273/454 (60%), Gaps = 30/454 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    YSS++  C +   L  GK++HS +   G    V +   L+DMYAKC         
Sbjct: 247 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCA-------- 298

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ-PIEA 142
                                 GS++ +R +F++MP+ +  SWTA+I+ YV+  +   EA
Sbjct: 299 --------------------ADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEA 338

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           ++L+  M +  +   N F+ SSVL A   +     G++++ Y ++ G  S   V ++L  
Sbjct: 339 IELFCKMIS-GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 397

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY + G + +AR+ FD + ++++VS+ A++  Y +  + EE F LF+E+  +GI  +AFT
Sbjct: 398 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 457

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           FA +L+  A   A   G+Q+HG + + GY       +AL+ MYS+CGN+E + +VFN M 
Sbjct: 458 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 517

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +++SWTS+I G+A++G   +ALE F  +L++GT+P+ I +V VL+AC+H G++ +G +
Sbjct: 518 DRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK 577

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +F+S+ ++HG+    +HYAC+VDLL RSG   EA + I+ MP+  D  +W +LLG CR+H
Sbjct: 578 HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVH 637

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           GN +L + AAE + E EP++PA Y+ ++N++ASA
Sbjct: 638 GNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 671



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 212/418 (50%), Gaps = 44/418 (10%)

Query: 10  RLKEALQIL----HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           RL  A   L     Q + P  + YS L++ C + R  + GK VH  L  SG +    + N
Sbjct: 24  RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 83

Query: 66  CLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
            L+ +Y+KCG+   A+ +F+ M  +RD+ S++ M+S F       QA   F +M +    
Sbjct: 84  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE---- 139

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                             L  Y           N++  ++V+ A S      +G+ I+G+
Sbjct: 140 ------------------LGFY----------PNEYCFAAVIRACSNANYAWVGEIIYGF 171

Query: 185 IMRTGF-DSDEVVWSALSDMYGK-CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           +++TG+ ++D  V   L DM+ K  G +  A ++FDKM +R++V+WT MI R+ Q G   
Sbjct: 172 VVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCAR 231

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   LF ++  SG  P+ FT++ VL+AC +     LGKQ+H  + R+G         +LV
Sbjct: 232 DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 291

Query: 303 HMYSKC---GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK-ALEYFELLLKSGTQ 358
            MY+KC   G+V++S+KVF  MP  +++SWT++I  Y Q+G  DK A+E F  ++    +
Sbjct: 292 DMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIR 351

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
           P+H  F  VL AC +      G Q + S   K G+         ++ + ARSGR  +A
Sbjct: 352 PNHFSFSSVLKACGNLSDPYTGEQVY-SYAVKLGIASVNCVGNSLISMYARSGRMEDA 408



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 199/413 (48%), Gaps = 44/413 (10%)

Query: 12  KEALQILHQI--SHPSPS--IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++  ++   H  P+   +SS+++ C        G++V+S+    G      + N L
Sbjct: 336 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 395

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+ G + DA+  FD + E+++ SYN ++ G+ K    E+A  LF+E+         
Sbjct: 396 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT------ 449

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                       I A                 FT +S+LS  ++I  +  G++IHG +++
Sbjct: 450 ---------GIGISA-----------------FTFASLLSGAASIGAMGKGEQIHGRLLK 483

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G+ S++ + +AL  MY +CG+I  A Q+F++M DR+V+SWT+MI  + + G       +
Sbjct: 484 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 543

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           F +++++G +PN  T+  VL+AC+       G++    M +  G  P     + +V +  
Sbjct: 544 FHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLG 603

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVF 364
           + G +  + +  N MP   D + W +L+     +G  +      E++L+   +PD    +
Sbjct: 604 RSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAY 661

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           + +      AG     ++   S+KE++ +      +   +++  R  RFH  E
Sbjct: 662 ILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW---IEVENRVHRFHVGE 711



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 38/254 (14%)

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
           R    GR    F+    + +    P+  T++ +L +C      +LGK VH  + + G + 
Sbjct: 18  RQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLEL 77

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
            S   + L+ +YSKCG+ E ++ +F GM  + DLVSW+++++ +A N M  +A+  F  +
Sbjct: 78  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 137

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC-IVDLLAR-S 410
           L+ G  P+   F  V+ AC++A     G +  +    K G         C ++D+  + S
Sbjct: 138 LELGFYPNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGS 196

Query: 411 GRFHEAEDVISKMPMK----------------------------------PDKFLWASLL 436
           G    A  V  KMP +                                  PD+F ++S+L
Sbjct: 197 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 256

Query: 437 GGCRIHGNLDLAKR 450
             C   G L L K+
Sbjct: 257 SACTELGLLALGKQ 270



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +D      + +EA  + ++I+     I    ++SL+       A+ +G+++H  L   G+
Sbjct: 427 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 486

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           K    I N L+ MY++CGNI  A  +F+EM++R+V S+ +MI+GF K G   +A  +F +
Sbjct: 487 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 546

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +                 +P                  N+ T  +VLSA S +  +  
Sbjct: 547 MLETG--------------TKP------------------NEITYVAVLSACSHVGMISE 574

Query: 178 G-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRY 235
           G K  +      G       ++ + D+ G+ G + EA +  + M +  D + W  ++G  
Sbjct: 575 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 634

Query: 236 FQEGRREEG 244
              G  E G
Sbjct: 635 RVHGNTELG 643


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 279/519 (53%), Gaps = 55/519 (10%)

Query: 11  LKEALQILHQISH-----------------PSPSIYSSLIQFCRQNRALEEGKKVHSHLK 53
           L E +QI  +++H                 P   +  ++I+ C    AL+ GK++H    
Sbjct: 42  LPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFAL 101

Query: 54  SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
            SG      + + LL MY +  ++ DA+ +FD++ +  V + + +IS F + G +++ + 
Sbjct: 102 VSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKE 161

Query: 114 LF----DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
           LF    D   + +  SW  MISG+ R    ++A+ +++ M + E    +  ++SSVL AV
Sbjct: 162 LFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNM-HLEGLKPDGTSVSSVLPAV 220

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM--------- 220
             +    +G +IH Y+++ G   D+ V SAL DMYGKC   +E   +F++M         
Sbjct: 221 GDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACN 280

Query: 221 ------------------------VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
                                   +D +VVSWT+MI    Q G+  E   LF E+   G+
Sbjct: 281 ALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGV 340

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +PN+ T   +L AC + AA   GK  H +  R G     +  SAL+ MY+KCG +  S+ 
Sbjct: 341 KPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRL 400

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
            F+ MP  +LVSW SL+AGYA +G   +A+  FEL+ + G +PDH+ F  VL+ACT  GL
Sbjct: 401 CFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGL 460

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            ++G  YF S+   HG+    +HY+C+V LL RSGR  EA  +I +MP +PD  +W +LL
Sbjct: 461 TEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALL 520

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             CR+H  +DL + AA+ +FE+EP NP  Y+ ++NIYAS
Sbjct: 521 SSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYAS 559


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 170/472 (36%), Positives = 280/472 (59%), Gaps = 1/472 (0%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LC++  ++EA +         P ++S+L+Q C   +++  GK++HS + +SG     FIS
Sbjct: 48  LCSKGHIREAFESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFIS 107

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL++Y+K G +  A  LFD M  R++ S N MI  +   G+LE A+NLFDEMP R+  
Sbjct: 108 NHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVA 167

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +W AM++G  ++    EAL L+  M    + + ++++L SVL   + +  L  G+++H Y
Sbjct: 168 TWNAMVTGLTKFEMNEEALLLFSRMNEL-SFMPDEYSLGSVLRGCAHLGALLAGQQVHAY 226

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +M+ GF+ + VV  +L+ MY K GS+++  ++ + M D  +V+W  ++    Q+G  E  
Sbjct: 227 VMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGV 286

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
              +  +  +G RP+  TF  V+++C++ A    GKQ+H    + G        S+LV M
Sbjct: 287 LDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSM 346

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YS+CG +++S K F      D+V W+S+IA Y  +G  ++A++ F  + +     + I F
Sbjct: 347 YSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITF 406

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           + +L AC+H GL DKGL  F  + +K+GL     HY C+VDLL RSG   EAE +I  MP
Sbjct: 407 LSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMP 466

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +K D  +W +LL  C+IH N ++A+R A+ +  I+P++ A+YV +ANIY+SA
Sbjct: 467 VKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSA 518


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 275/514 (53%), Gaps = 61/514 (11%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD--- 79
           +P  +++ S+++ C     L  G+ +H ++   G    ++  N L++MY+K   +     
Sbjct: 105 YPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGR 164

Query: 80  ----AQTLFDEMQER--------------------------------------------- 90
               A  + DEM ER                                             
Sbjct: 165 QRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYK 224

Query: 91  --------DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                   + C+    I   +   S++  R +F+ MP++D  SW  +I+G  R     E 
Sbjct: 225 PRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGET 284

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L + R M    N   + FTLSSVL  ++    +  GKEIHG  +R G D++  V S+L D
Sbjct: 285 LTMVREMGG-ANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLID 343

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KC  + ++ ++F  + +RD +SW ++I    Q G  +EG   F +++ + I+P +++
Sbjct: 344 MYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYS 403

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F+ ++ ACA      LGKQ+HGY+TR G+D   F AS+LV MY+KCGN+  ++++F+ M 
Sbjct: 404 FSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMR 463

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D+VSWT++I G A +G    A+E FE +   G +P+++ F+ VLTAC+HAGLVD+  +
Sbjct: 464 LRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWK 523

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+    G+    +HYA + DLL R+GR  EA D I  MP+ P   +WA+LL  CR+H
Sbjct: 524 YFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N+D+A++ A  + E++P+N   Y+ +ANIY++A
Sbjct: 584 KNVDMAEKVANRILEVDPKNTGAYILLANIYSAA 617



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 150/356 (42%), Gaps = 47/356 (13%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL-DLYRMMQNFENSVSNKFTLSSVL 166
           L  +  LF+ +      +W ++I  Y  +  P ++L     M+ +      N F   SVL
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF--PSVL 115

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE-------ARQIFDK 219
            A + +  L LG+ +HGYI+R G D D    +AL +MY K   + +       A Q+ D+
Sbjct: 116 KACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDE 175

Query: 220 MVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           M +  R V + + ++G    +GR+      F+  +    R                   E
Sbjct: 176 MTERTRSVRTASVLVG---NQGRKVSDIEAFNYDVSCRSR-------------------E 213

Query: 278 LGKQVHGYMTRIGYDPYS----FAASAL---VHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
              QV      I Y P S      A  L   +   S   +V++ +K+F  MP  DLVSW 
Sbjct: 214 FEAQV----LEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWN 269

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++IAG A+NG+  + L     +  +  +PD      VL        + KG +  H    +
Sbjct: 270 TIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKE-IHGCSIR 328

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
            GL       + ++D+ A+  R  ++  V + +  + D   W S++ GC  +G  D
Sbjct: 329 QGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER-DGISWNSIIAGCVQNGLFD 383



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 144/321 (44%), Gaps = 31/321 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK   Q+L     P    +SS++  C     L  GK++H ++  +GF   +FI++ L+DM
Sbjct: 386 LKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDM 445

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           YAKCGNI  A+ +FD M+ RD+ S+  MI G    G    A  LF++M          + 
Sbjct: 446 YAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTE------GIE 499

Query: 131 SGYVRYNQPIEALD---LYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLGK--EIHG 183
             YV +   + A     L      + NS++  F ++  +   +A+  L  R G+  E + 
Sbjct: 500 PNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYD 559

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA--MIGRYFQEGRR 241
           +I          VW+ L        +++ A ++ +++++ D  +  A  ++   +   RR
Sbjct: 560 FICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARR 619

Query: 242 -EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM----TRIGYDPYSF 296
            +E     + L ++GIR           AC   +  E+  +V+ +M    +   Y+    
Sbjct: 620 WKEAAKWRASLRRTGIRKTP--------AC---SWIEVRNKVYAFMAGDESHPCYEKIRE 668

Query: 297 AASALVHMYSKCGNVENSKKV 317
           A   L+ +  K G V ++ +V
Sbjct: 669 AMEVLMELMEKEGYVPDTSEV 689



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 123/275 (44%), Gaps = 35/275 (12%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y     ++++ ++F+ +     ++W ++I  Y   G   +    F  ++ SG+ P+   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS-------K 315
           F  VL ACA      LG+ +HGY+ R+G D   +  +AL++MYSK   ++ S        
Sbjct: 111 FPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGAS 170

Query: 316 KVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV------- 367
           +V + M  R   V   S++ G     + D     +++  +S      ++ +         
Sbjct: 171 QVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYR 230

Query: 368 -LTAC---------THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            + AC         +H+  VD   + F  + EK  +++       I+   AR+G + E  
Sbjct: 231 EMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNT-----IIAGNARNGLYGETL 285

Query: 418 DVISKM---PMKPDKFLWASLLGGCRIHGNLDLAK 449
            ++ +M    +KPD F  +S+L    I  N+D++K
Sbjct: 286 TMVREMGGANLKPDSFTLSSVLP--LIAENVDISK 318


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 271/491 (55%), Gaps = 40/491 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   +  +L + C +  A + GK++H     SG     F+   +  MY +CG + DA+ +
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKV 173

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQP 139
           FD M ++DV + + ++  + + G LE+   +  EM     + +  SW  ++SG+ R    
Sbjct: 174 FDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYH 233

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            EA+ +++ + +      ++ T+SSVL +V   + L +G+ IHGY+++ G   D+ V SA
Sbjct: 234 KEAVVMFQKIHHL-GFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISA 292

Query: 200 LSDMYGKCGSINEARQIFDK--------------------MVDR---------------D 224
           + DMYGK G +     +F++                    +VD+               +
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELN 352

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           VVSWT++I    Q G+  E   LF E+  +G++PN  T   +L AC + AA   G+  HG
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           +  R+         SAL+ MY+KCG +  S+ VFN MP  +LV W SL+ G++ +G   +
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKE 472

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
            +  FE L+++  +PD I F  +L+AC   GL D+G +YF  + E++G+    +HY+C+V
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMV 532

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           +LL R+G+  EA D+I +MP +PD  +W +LL  CR+  N+DLA+ AAE LF +EPENP 
Sbjct: 533 NLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPG 592

Query: 465 TYVTMANIYAS 475
           TYV ++NIYA+
Sbjct: 593 TYVLLSNIYAA 603



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 198/467 (42%), Gaps = 104/467 (22%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG 106
           + H+ +  SG +   +IS  L+  Y+     +DA  +   + +  + S++++I   TK  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
              Q+  +F  M     FS   +   +V                     + N F + + L
Sbjct: 96  LFTQSIGVFSRM-----FSHGLIPDSHV---------------------LPNLFKVCAEL 129

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
           SA       ++GK+IH     +G D D  V  ++  MY +CG + +AR++FD+M D+DVV
Sbjct: 130 SA------FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVV 183

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA----------------- 269
           + +A++  Y ++G  EE   + SE+  SGI  N  ++ G+L+                  
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243

Query: 270 -----CADHAAE-------------ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
                C D                  +G+ +HGY+ + G        SA++ MY K G+V
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303

Query: 312 ENSKKVFN---------------GMPRPDL--------------------VSWTSLIAGY 336
                +FN               G+ R  L                    VSWTS+IAG 
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           AQNG   +ALE F  +  +G +P+H+    +L AC +   +  G +  H    +  L   
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDN 422

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               + ++D+ A+ GR + ++ V + MP K +   W SL+ G  +HG
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 174/470 (37%), Positives = 266/470 (56%), Gaps = 34/470 (7%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           Q  LK    +L +   PS   Y +++  C    ALE+GK++H+ +  S     V +S  L
Sbjct: 228 QESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTAL 287

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
             MY KCG + DA                               R +F+ +P RD  +W 
Sbjct: 288 TKMYIKCGAVKDA-------------------------------REVFECLPNRDVIAWN 316

Query: 128 AMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            MI G V   Q  EA  ++ RM++  E    ++ T  ++LSA +    L  GKEIH   +
Sbjct: 317 TMIGGLVDSGQLEEAHGMFHRMLK--ECVAPDRVTYLAILSACARPGGLACGKEIHARAV 374

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G  SD    +AL +MY K GS+ +ARQ+FD+M  RDVVSWTA++G Y   G+  E F+
Sbjct: 375 KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFS 434

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
            F ++++ G+  N  T+  VL AC++  A + GK++H  + + G       A+AL+ MY 
Sbjct: 435 TFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYF 494

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG+VE++ +V  GM   D+V+W +LI G AQNG   +AL+ FE++     +P+   FV 
Sbjct: 495 KCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVN 554

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           V++AC    LV++G + F S+++ +G+  T  HYAC+VD+LAR+G   EAEDVI  MP K
Sbjct: 555 VMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFK 614

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P   +W +LL  CR HGN+++ ++AAE   ++EP+N  TYV+++ IYA+A
Sbjct: 615 PSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAA 664



 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 142/427 (33%), Positives = 225/427 (52%), Gaps = 35/427 (8%)

Query: 13  EALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           + LQ LHQ      S  Y  L+Q C + + L  GK+VH H+   G KP V+I N LL +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
             CG++++A+ LFD+   + V S+N MISG+   G  ++A NLF  M Q           
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQ----------- 138

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
                    E L+             +KFT  S+LSA S+   L  G+E+H  +M  G  
Sbjct: 139 ---------EGLE------------PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLA 177

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           ++  V +AL  MY KCGS+ +AR++FD M  RD VSWT + G Y + G  +E    +  +
Sbjct: 178 NNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAM 237

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           ++ G+RP+  T+  VL+AC   AA E GKQ+H  +    +      ++AL  MY KCG V
Sbjct: 238 LQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAV 297

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           +++++VF  +P  D+++W ++I G   +G  ++A   F  +LK    PD + ++ +L+AC
Sbjct: 298 KDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSAC 357

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
              G +  G +  H+   K GL         ++++ +++G   +A  V  +MP K D   
Sbjct: 358 ARPGGLACGKE-IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVS 415

Query: 432 WASLLGG 438
           W +L+GG
Sbjct: 416 WTALVGG 422



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 157/280 (56%), Gaps = 14/280 (5%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L +GK++H +I+R G   +  + + L  +Y  CGS+NEAR++FDK  ++ VVSW  MI  
Sbjct: 60  LAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISG 119

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Y   G  +E F LF+ + + G+ P+ FTF  +L+AC+  AA   G++VH  +   G    
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           +   +AL+ MY+KCG+V ++++VF+ M   D VSWT+L   YA++G   ++L+ +  +L+
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CIVDLLA 408
            G +P  I ++ VL+AC     ++KG       K+ H     ++H++       +  +  
Sbjct: 240 EGVRPSRITYMNVLSACGSLAALEKG-------KQIHAQIVESEHHSDVRVSTALTKMYI 292

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + G   +A +V   +P + D   W +++GG    G L+ A
Sbjct: 293 KCGAVKDAREVFECLPNR-DVIAWNTMIGGLVDSGQLEEA 331


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 178/509 (34%), Positives = 270/509 (53%), Gaps = 63/509 (12%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF---- 84
           Y  L Q C    A  +GK +  H+   GF   V+I N L++MYA CGN+SDA+ +F    
Sbjct: 129 YPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSS 188

Query: 85  ---------------------------DEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
                                      D M ER+V + N+MI  F K G++E+A  LF+E
Sbjct: 189 VLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNE 248

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M Q+D  SW+A+IS Y +     EAL L++ M N    + ++  + SVLSA S +  +  
Sbjct: 249 MKQKDLVSWSALISCYEQNEMYEEALILFKEM-NANGIMVDEVVVLSVLSACSRLLVVIT 307

Query: 178 GKEIHGYIMRTGFDS-------------------------------DEVVWSALSDMYGK 206
           GK +HG +++ G ++                               D++ W+++   Y K
Sbjct: 308 GKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVK 367

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG I +AR +FD M D+D VSW+AMI  Y Q+ R  E   LF E+   G +P+      V
Sbjct: 368 CGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSV 427

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++AC   AA + GK +H Y+ + G        + L++MY K G VE++ +VF G+    +
Sbjct: 428 ISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGV 487

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            +W +LI G A NG+ DK+L+ F  + + G  P+ I FV VL AC H GLVD+G ++F+S
Sbjct: 488 STWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNS 547

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + ++H +     HY C+VDLL R+G   EAE++I  MPM PD   W +LLG C+ +G+ +
Sbjct: 548 MIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNE 607

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYAS 475
             +R    L E+ P++    V ++NIYAS
Sbjct: 608 TGERIGRKLVELHPDHDGFNVLLSNIYAS 636



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 194/395 (49%), Gaps = 26/395 (6%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C +   +  GK VH  +   G +  V + N L+ MY+ C  +  AQ LF E    
Sbjct: 294 SVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCL 353

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D  S+N+MISG+ K G +E+AR LFD MP +DN SW+AMISGY + ++  E L L++ MQ
Sbjct: 354 DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E +  ++  L SV+SA + +  L  GK IH YI + G   + ++ + L +MY K G +
Sbjct: 414 -IEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCV 472

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A ++F  + ++ V +W A+I      G  ++    FSE+ + G+ PN  TF  VL AC
Sbjct: 473 EDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGAC 532

Query: 271 ADHAAEELGKQVHGYMT---RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDL 326
                 + G +    M    +IG  P       +V +  + G ++ ++++   MP  PD+
Sbjct: 533 RHMGLVDEGHRHFNSMIQEHKIG--PNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDV 590

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA--CTHAGLVD----KG 380
            +W +L+    + G  +        L++    PDH  F  +L+    +    VD    +G
Sbjct: 591 STWGALLGACKKYGDNETGERIGRKLVE--LHPDHDGFNVLLSNIYASKGNWVDVLEVRG 648

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           +   H + +  G +    H           GR HE
Sbjct: 649 MMRQHGVVKTPGCSMIEAH-----------GRVHE 672



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/508 (23%), Positives = 213/508 (41%), Gaps = 125/508 (24%)

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG----------------SLEQARNLFD 116
           KC NI     +  +M          ++SGF K                  ++ Q+  +F 
Sbjct: 35  KCQNIKQFNQILSQM----------ILSGFFKDSFAASRLLKFSTELPFININQSYQIFS 84

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
            +   + F    M+ GY++ N P +A+ +Y+ M    N  ++ +T   +  + S      
Sbjct: 85  HIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLE-SNVAADNYTYPILFQSCSIRLAEF 143

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            GK I  ++++ GFDSD  + + L +MY  CG++++AR++FD     D+VSW +M+  Y 
Sbjct: 144 DGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYV 203

Query: 237 -------------------------------QEGRREEGFALFSELIK------------ 253
                                          ++G  EE   LF+E+ +            
Sbjct: 204 LVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISC 263

Query: 254 -------------------SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
                              +GI  +      VL+AC+       GK VHG + ++G + Y
Sbjct: 264 YEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETY 323

Query: 295 SFAASALVHMYS-------------------------------KCGNVENSKKVFNGMPR 323
               +AL+HMYS                               KCG +E ++ +F+ MP 
Sbjct: 324 VNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPD 383

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D VSW+++I+GYAQ     + L  F+ +   GT+PD  + V V++ACTH   +D+G ++
Sbjct: 384 KDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KW 442

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+   K+GL         ++++  + G   +A +V   +  K     W +L+ G  ++G
Sbjct: 443 IHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVS-TWNALILGLAMNG 501

Query: 444 NLDLAKRAAEALFE--IEPENPATYVTM 469
            +D + +    + E  + P N  T+V +
Sbjct: 502 LVDKSLKTFSEMKEHGVTP-NEITFVAV 528



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 122/242 (50%), Gaps = 10/242 (4%)

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG--SINEARQIF 217
            TL  + + +   Q ++   +I   ++ +GF  D    S L     +    +IN++ QIF
Sbjct: 24  LTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIF 83

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
             + + +      M+  Y Q     +   ++  +++S +  + +T+  +  +C+   AE 
Sbjct: 84  SHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEF 143

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            GK +  ++ ++G+D   +  + L++MY+ CGN+ +++KVF+G    D+VSW S++AGY 
Sbjct: 144 DGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYV 203

Query: 338 QNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
             G  ++A + ++ + +      +  IV  G        G V++  + F+ +K+K  +++
Sbjct: 204 LVGNVEEAKDVYDRMPERNVIASNSMIVLFG------KKGNVEEACKLFNEMKQKDLVSW 257

Query: 396 TA 397
           +A
Sbjct: 258 SA 259



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 110/252 (43%), Gaps = 38/252 (15%)

Query: 8   QRRLKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           Q R  E L +  ++    + P  +I  S+I  C    AL++GK +H++++ +G K  + +
Sbjct: 399 QDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIIL 458

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
              L++MY K G + DA  +F  ++E+ V ++N +I G    G ++++   F EM +   
Sbjct: 459 GTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEH-- 516

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-KEIH 182
                                             N+ T  +VL A   +  +  G +  +
Sbjct: 517 ------------------------------GVTPNEITFVAVLGACRHMGLVDEGHRHFN 546

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRR 241
             I       +   +  + D+ G+ G + EA ++ + M +  DV +W A++G   + G  
Sbjct: 547 SMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDN 606

Query: 242 EEGFALFSELIK 253
           E G  +  +L++
Sbjct: 607 ETGERIGRKLVE 618


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 261/461 (56%), Gaps = 39/461 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ S +   I+ C     L  G++ H      GF+P +F+S+ L+DMY+KCG + D    
Sbjct: 150 PNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRD---- 205

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                      AR LFDE+  R+  SWT+MI+GYV+ +    AL
Sbjct: 206 ---------------------------ARTLFDEISHRNIVSWTSMITGYVQNDDAHRAL 238

Query: 144 DLYRMMQNFENS-------VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
            L++     E+          +   + SVLSA S +    + + +HG++++ GF+ D  V
Sbjct: 239 LLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGV 298

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG- 255
            + L D Y KCG +  +R++FD M +RDV+SW ++I  Y Q G   E   +F  ++K G 
Sbjct: 299 ENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 358

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           I  NA T + VL ACA   ++ LGK +H  + ++G +   F  ++++ MY KCG VE ++
Sbjct: 359 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 418

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           K F+ M   ++ SW++++AGY  +G   +ALE F  +  +G +P++I FV VL AC+HAG
Sbjct: 419 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 478

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           L+++G  +F ++  +  +    +HY C+VDLL R+G   EA D+I  M ++PD  +W +L
Sbjct: 479 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 538

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LG CR+H N+DL + +A  LFE++P+N   YV ++NIYA A
Sbjct: 539 LGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADA 579



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 200/399 (50%), Gaps = 20/399 (5%)

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLY 146
           + R +C+   +   ++   +L     LF++   + N FSW ++I+   R    +EAL  +
Sbjct: 84  KRRSICAGAVLRRRYSNNPNLT---TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAF 140

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M+       N+ T    + + SA+  L  G++ H   +  GF+ D  V SAL DMY K
Sbjct: 141 SSMRKLSLK-PNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSK 199

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI--KSG------IRP 258
           CG + +AR +FD++  R++VSWT+MI  Y Q         LF E +  +SG      +  
Sbjct: 200 CGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCV 259

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           +      VL+AC+  + + + + VHG++ + G++      + L+  Y+KCG +  S++VF
Sbjct: 260 DPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVF 319

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLV 377
           +GM   D++SW S+IA YAQNGM  +++E F  ++K G    + +    VL AC H+G  
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 379

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             G +  H    K GL         I+D+  + G+   A     +M  K  K  W++++ 
Sbjct: 380 RLG-KCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS-WSAMVA 437

Query: 438 GCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
           G  +HG+   AK A E  +E+        Y+T  ++ A+
Sbjct: 438 GYGMHGH---AKEALEVFYEMNMAGVKPNYITFVSVLAA 473


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 183/453 (40%), Positives = 269/453 (59%), Gaps = 39/453 (8%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G++VH     SG    VF+ N L+DMYAKCG + DA  +F+ M+ +DV ++N M++G+++
Sbjct: 250 GRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQ 309

Query: 105 GGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
            G  E A +LF +M +     D  +W+++ISGY +     EA+D++R M        N  
Sbjct: 310 NGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCR-PNVV 368

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGF------DSDEV-VWSALSDMYGKCGSINEA 213
           TL S+LSA +++  L  GKE H Y ++         D+D++ V +AL DMY KC S+  A
Sbjct: 369 TLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVA 428

Query: 214 RQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFSELIK--SGIRPNAFTFAGVLNA 269
           R +FD++   DRDVV+WT MIG Y Q G       LFSE+ K  + I PN FT + VL A
Sbjct: 429 RAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMA 488

Query: 270 CADHAAEELGKQVHGYM---TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           CA  AA + GKQ+H Y+   +RI  D   F A+ L+ MYSK G+V+ ++ VF+ M + + 
Sbjct: 489 CARLAALKFGKQIHAYVLRRSRIDSDVL-FVANCLIDMYSKSGDVDTAQVVFDSMSKRNA 547

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL---VDKGLQY 383
           VSWTSL+ GY  +G  + A   F+ + K     D I F+ VL AC+H+G+   VD G++ 
Sbjct: 548 VSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGMDFGVDPGVE- 606

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                          HYAC+VDLL R+GR  EA  +I+ MP++P   +W +LL  CRIH 
Sbjct: 607 ---------------HYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHS 651

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N +LA+ AA+ L E++ +N  TY  ++NIYA+A
Sbjct: 652 NEELAEFAAKKLLELKADNDGTYTLLSNIYANA 684



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 218/496 (43%), Gaps = 84/496 (16%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           RL   ++ LH    P    +  + + C +    E G  +H  +   GF+  VF+ N ++ 
Sbjct: 112 RLFRRMKTLHWT--PDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVIS 169

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSW 126
           MY KC                                ++  AR +FDE+  R   D+ +W
Sbjct: 170 MYGKCK-------------------------------AVVHARKVFDELCYRGICDSVTW 198

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            +++S Y     P  A+ L+R M      + +   + ++L     +     G+++HG+ +
Sbjct: 199 NSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCV 258

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R+G   D  V +AL DMY KCG + +A ++F++M  +DVV+W AM+  Y Q GR E+  +
Sbjct: 259 RSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALS 318

Query: 247 LFSELIKSGI-----------------------------------RPNAFTFAGVLNACA 271
           LF ++ +  I                                   RPN  T   +L+ACA
Sbjct: 319 LFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACA 378

Query: 272 DHAAEELGKQVHGYMTRI------GYDPYSFAA-SALVHMYSKCGNVENSKKVFNGM-PR 323
              A   GK+ H Y  +         D    A  +AL+ MY+KC ++E ++ +F+ + P+
Sbjct: 379 SVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPK 438

Query: 324 P-DLVSWTSLIAGYAQNGMPDKALEYFELLLK--SGTQPDHIVFVGVLTACTHAGLVDKG 380
             D+V+WT +I GYAQ+G  + AL+ F  + K  +   P+      VL AC     +  G
Sbjct: 439 DRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFG 498

Query: 381 LQYFHSIKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
            Q    +  +  +       A C++D+ ++SG    A+ V   M  K +   W SLL G 
Sbjct: 499 KQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLLTGY 557

Query: 440 RIHGNLDLAKRAAEAL 455
            +HG  + A R  + +
Sbjct: 558 GMHGRSEDAFRVFDEM 573



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 175/382 (45%), Gaps = 47/382 (12%)

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           + W  +I   + +N P  AL L+R M+    +  + +T   V  A   I    LG  IHG
Sbjct: 92  YWWNQLIRHALHFNSPNTALRLFRRMKTLHWT-PDHYTFPFVFKACGEISNFELGASIHG 150

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGR 240
            ++R GF+S+  V +A+  MYGKC ++  AR++FD++  R   D V+W +++  Y     
Sbjct: 151 CVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFV 210

Query: 241 REEGFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
                +LF E+ +  GI P+      +L  C        G+QVHG+  R G     F  +
Sbjct: 211 PNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGN 270

Query: 300 ALVHMYSKCGNVENSKKVFNGMP-----------------------------------RP 324
           ALV MY+KCG +E++ KVF  M                                      
Sbjct: 271 ALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIES 330

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-Y 383
           D+V+W+S+I+GYAQ G   +A++ F  +     +P+ +  + +L+AC   G +  G + +
Sbjct: 331 DVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETH 390

Query: 384 FHSIK-----EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLG 437
            +S+K     E +  T        ++D+ A+      A  +  ++ P   D   W  ++G
Sbjct: 391 CYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIG 450

Query: 438 GCRIHGNLDLAKRAAEALFEIE 459
           G   HG+ + A +    +F+I+
Sbjct: 451 GYAQHGDANHALQLFSEMFKID 472


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 180/481 (37%), Positives = 261/481 (54%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC + +LK+AL++L Q S PS   Y  LI  C    +L +G +VH H+  +G     
Sbjct: 53  IQSLCKEGKLKQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDP 112

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++  L+ MY+  G                               S++ AR +FD+  +R
Sbjct: 113 FLATKLIGMYSDLG-------------------------------SVDYARKVFDKTRKR 141

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC----LRL 177
             + W A+           E L LY  M N     S++FT + VL A  A +C    L  
Sbjct: 142 TIYVWNALFRALTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTADHLTK 200

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIH ++ R G++S   + + L DMY + G ++ A  +F+ M  R+VVSW+AMI  Y +
Sbjct: 201 GKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAK 260

Query: 238 EGRREEGFALFSELIK--SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            G+  E    F E++       PN+ T   VL ACA  AA E G+ +HGY+ R G D   
Sbjct: 261 NGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSIL 320

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              SALV MY +CG ++  ++VF+ M   D+VSW SLI+ Y  +G   KA++ FE +L +
Sbjct: 321 PVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLAN 380

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P  + FV VL AC+H GLV++G + F S+   HG+    +HYAC+VDLL R+ R  E
Sbjct: 381 GASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDE 440

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  ++  M  +P   +W SLLG CRIHGN++LA+RA+  LF +EP+N   YV +A+IYA 
Sbjct: 441 AAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAE 500

Query: 476 A 476
           A
Sbjct: 501 A 501


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/444 (38%), Positives = 265/444 (59%), Gaps = 10/444 (2%)

Query: 42  LEEGKK----VHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96
           LEEG++    VH+H+  +G     V I N L++MYAK G I+DA ++F+ M E+D  S+N
Sbjct: 316 LEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWN 375

Query: 97  TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EALDLYRMMQNFENS 155
           ++ISG  +    E A  +F  MP+ D  SW ++I         + +A+  +  M      
Sbjct: 376 SLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWG 435

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           +S + T  ++LSAVS++    +  +IH  +++     D  + +AL   YGKCG +NE  +
Sbjct: 436 LS-RVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEK 494

Query: 216 IFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           IF +M + RD VSW +MI  Y       +   L   +++ G R ++FTFA +L+ACA  A
Sbjct: 495 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVA 554

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             E G +VH    R   +      SALV MYSKCG ++ + + F  MP  ++ SW S+I+
Sbjct: 555 TLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMIS 614

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GYA++G  +KAL+ F  ++  G  PDH+ FVGVL+AC+H G V++G ++F S+ E + L+
Sbjct: 615 GYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLS 674

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-CRIHG-NLDLAKRAA 452
              +H++C+VDLL R+G+  E  D I+ MPMKP+  +W ++LG  CR +G N +L +RAA
Sbjct: 675 PRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAA 734

Query: 453 EALFEIEPENPATYVTMANIYASA 476
           E L E+EP+N   YV +AN+YAS 
Sbjct: 735 EMLLELEPQNAVNYVLLANMYASG 758



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 206/462 (44%), Gaps = 80/462 (17%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S   + SLI   + +   EE +++H      GF   +F+SN L+++Y + G+        
Sbjct: 98  SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGD-------- 149

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                                  L  A+ LFDEM  R+  +W  +ISGY +  +P EA  
Sbjct: 150 -----------------------LGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACA 186

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAV--SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            +R M      + N +   S L A   S     +LG +IHG I +T + SD VV + L  
Sbjct: 187 RFRDMVR-AGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLIS 245

Query: 203 MYGKC-GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI----R 257
           MYG C  S N+AR +FD +  R+ +SW ++I  Y + G     + LFS + K G+    +
Sbjct: 246 MYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFK 305

Query: 258 PN-AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSK 315
           PN AF+   VL           G++VH ++ R G +    A  + LV+MY+K G + ++ 
Sbjct: 306 PNDAFSEFSVL-----EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADAC 360

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNG-----------MPD--------------------- 343
            VF  M   D VSW SLI+G  QN            MP+                     
Sbjct: 361 SVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVS 420

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +A++YF  +++ G     + F+ +L+A +   L +   Q  H++  K+ L+        +
Sbjct: 421 QAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ-IHALVLKYCLSDDTAIGNAL 479

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           +    + G  +E E + ++M    D+  W S++ G  IH  L
Sbjct: 480 LSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG-YIHNEL 520



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/482 (22%), Positives = 225/482 (46%), Gaps = 72/482 (14%)

Query: 24  PSPSIYSSLIQFCRQN--RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC-GNISDA 80
           P+   + S ++ C+++     + G ++H  +  + +   V + N L+ MY  C  + +DA
Sbjct: 198 PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDA 257

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           +++FD +  R+  S+N++IS +++ G    A +LF  M Q++   ++          +P 
Sbjct: 258 RSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM-QKEGLGFSF---------KPN 307

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSA 199
           +A   + +++                      +  R G+E+H +++RTG + ++V + + 
Sbjct: 308 DAFSEFSVLE----------------------EGRRKGREVHAHVIRTGLNDNKVAIGNG 345

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS---------- 249
           L +MY K G+I +A  +F+ MV++D VSW ++I    Q    E+   +FS          
Sbjct: 346 LVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSW 405

Query: 250 ----------------------ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
                                 ++++ G   +  TF  +L+A +  +  E+  Q+H  + 
Sbjct: 406 NSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVL 465

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-DLVSWTSLIAGYAQNGMPDKAL 346
           +      +   +AL+  Y KCG +   +K+F  M    D VSW S+I+GY  N +  KA+
Sbjct: 466 KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAM 525

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           +    +++ G + D   F  +L+AC     +++G++  H+   +  L       + +VD+
Sbjct: 526 DLVWFMMQKGQRLDSFTFATILSACASVATLERGME-VHACGIRACLESDVVVGSALVDM 584

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA-KRAAEALFEIEPENPAT 465
            ++ GR   A      MP++ + + W S++ G   HG+ + A K     + + +P +  T
Sbjct: 585 YSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVT 643

Query: 466 YV 467
           +V
Sbjct: 644 FV 645



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 164/334 (49%), Gaps = 26/334 (7%)

Query: 141 EALDLYRMMQNFENSV--SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           + +D Y+   +  N+   S+  T  S+++      C    +E+H   ++ GF  +  + +
Sbjct: 79  DLVDHYKTSTSHCNTTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSN 138

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
            L ++Y + G +  A+++FD+M +R++V+W  +I  Y Q G+ +E  A F +++++G  P
Sbjct: 139 TLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIP 198

Query: 259 NAFTFAGVLNACADHAAE--ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN-SK 315
           N + F   L AC +      +LG Q+HG +++  Y       + L+ MY  C +  N ++
Sbjct: 199 NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDAR 258

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT----QPDHIVFVGVLTAC 371
            VF+G+   + +SW S+I+ Y++ G    A + F  + K G     +P+         A 
Sbjct: 259 SVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPN--------DAF 310

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACI----VDLLARSGRFHEAEDVISKMPMKP 427
           +   ++++G +    +      T   D+   I    V++ A+SG   +A  V   M ++ 
Sbjct: 311 SEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEK 369

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           D   W SL+ G   +   + ++ AAE +F + PE
Sbjct: 370 DSVSWNSLISGLDQN---ECSEDAAE-MFSLMPE 399


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 273/457 (59%), Gaps = 36/457 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC---GNISDA 80
           P    YSS++  C +   L  GK++HS +   G    V +   L+DMYAKC   G++ D+
Sbjct: 54  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 113

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLE-QARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           + +F++M E +V S+  +I+ + + G  + +A  LF             MISG++R    
Sbjct: 114 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELF-----------CKMISGHIR---- 158

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                             N F+ SSVL A   +     G++++ Y ++ G  S   V ++
Sbjct: 159 -----------------PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 201

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY + G + +AR+ FD + ++++VS+ A++  Y +  + EE F LF+E+  +GI  +
Sbjct: 202 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 261

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           AFTFA +L+  A   A   G+Q+HG + + GY       +AL+ MYS+CGN+E + +VFN
Sbjct: 262 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 321

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   +++SWTS+I G+A++G   +ALE F  +L++GT+P+ I +V VL+AC+H G++ +
Sbjct: 322 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 381

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G ++F+S+ ++HG+    +HYAC+VDLL RSG   EA + I+ MP+  D  +W +LLG C
Sbjct: 382 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 441

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           R+HGN +L + AAE + E EP++PA Y+ ++N++ASA
Sbjct: 442 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 478



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 201/369 (54%), Gaps = 18/369 (4%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  +FD+MP+R+  +WT MI+ + +     +A+DL+  M+     V ++FT SSVLSA +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME-LSGYVPDRFTYSSVLSACT 67

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC---GSINEARQIFDKMVDRDVVS 227
            +  L LGK++H  ++R G   D  V  +L DMY KC   GS++++R++F++M + +V+S
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 228 WTAMIGRYFQEGR-REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           WTA+I  Y Q G   +E   LF ++I   IRPN F+F+ VL AC + +    G+QV+ Y 
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            ++G    +   ++L+ MY++ G +E+++K F+ +   +LVS+ +++ GYA+N   ++A 
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IV 404
             F  +  +G       F  +L+     G + KG Q  H    K G  Y ++   C  ++
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGG--YKSNQCICNALI 304

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI----EP 460
            + +R G    A  V ++M  + +   W S++ G   HG    A RA E   ++      
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHG---FATRALEMFHKMLETGTK 360

Query: 461 ENPATYVTM 469
            N  TYV +
Sbjct: 361 PNEITYVAV 369



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 199/413 (48%), Gaps = 44/413 (10%)

Query: 12  KEALQILHQI--SHPSPS--IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++  ++   H  P+   +SS+++ C        G++V+S+    G      + N L
Sbjct: 143 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 202

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+ G + DA+  FD + E+++ SYN ++ G+ K    E+A  LF+E+         
Sbjct: 203 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT------ 256

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                       I A                 FT +S+LS  ++I  +  G++IHG +++
Sbjct: 257 ---------GIGISA-----------------FTFASLLSGAASIGAMGKGEQIHGRLLK 290

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G+ S++ + +AL  MY +CG+I  A Q+F++M DR+V+SWT+MI  + + G       +
Sbjct: 291 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 350

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           F +++++G +PN  T+  VL+AC+       G++    M +  G  P     + +V +  
Sbjct: 351 FHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLG 410

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVF 364
           + G +  + +  N MP   D + W +L+     +G  +      E++L+   +PD    +
Sbjct: 411 RSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAY 468

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           + +      AG     ++   S+KE++ +      +   +++  R  RFH  E
Sbjct: 469 ILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW---IEVENRVHRFHVGE 518



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +D      + +EA  + ++I+     I    ++SL+       A+ +G+++H  L   G+
Sbjct: 234 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 293

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           K    I N L+ MY++CGNI  A  +F+EM++R+V S+ +MI+GF K G   +A  +F +
Sbjct: 294 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 353

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +                 +P                  N+ T  +VLSA S +  +  
Sbjct: 354 MLETG--------------TKP------------------NEITYVAVLSACSHVGMISE 381

Query: 178 G-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRY 235
           G K  +      G       ++ + D+ G+ G + EA +  + M +  D + W  ++G  
Sbjct: 382 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 441

Query: 236 FQEGRREEG 244
              G  E G
Sbjct: 442 RVHGNTELG 450


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 265/449 (59%), Gaps = 35/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y + I  C + +AL EG++VH+H+  + ++P V+++  L+ +Y +CG             
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCG------------- 90

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
                             +L+ ARN+ D MP+R+  SWTAMISGY +  +  EAL+L+ R
Sbjct: 91  ------------------ALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIR 132

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M++      +N+FTL++VL++    Q ++  +++H  +++T F+S   V S+L DMYGK 
Sbjct: 133 MLR--AGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKS 190

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G+I EAR++FD + +RD VS TA+I  Y Q G  +E   LF +L  SG++ N  TF  +L
Sbjct: 191 GNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLL 250

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            + +  A+   GKQVHG + R     +    ++L+ MYSKCG +  S++VF+ MP+   +
Sbjct: 251 TSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAI 310

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW +++ GY ++G+  + ++ F  + +   +PD +  + VL+ C+H GLVD+GL  F  I
Sbjct: 311 SWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLI 369

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            ++        HY C++DLL RSG+  +A D+I  MP +P   +W SLLG CR+H N+ +
Sbjct: 370 VKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSV 429

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            +  A+ L ++EP N   YV ++NIYA+A
Sbjct: 430 GEVVAQKLLDMEPGNAGNYVILSNIYAAA 458



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 3/177 (1%)

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           S L   G       +   + AC +  A   G+QVH +M +  Y P  + A+ L+ +Y +C
Sbjct: 30  SSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRC 89

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G +++++ V +GMP  ++VSWT++I+GY+Q+G   +ALE F  +L++G + +      VL
Sbjct: 90  GALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVL 149

Query: 369 TAC-THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           T+C  H  +  + ++  HS+  K          + ++D+  +SG   EA  V   +P
Sbjct: 150 TSCPVHQSI--QQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP 204


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 261/453 (57%), Gaps = 35/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL++ C      + GK +H  +        ++I   LL+MYA CG+       
Sbjct: 77  PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGD------- 129

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   L+ AR LF+ M  R+   WT+MISGY++ + P EAL
Sbjct: 130 ------------------------LKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEAL 165

Query: 144 DLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            LY+ M+  E+  S ++ T+++++SA + ++ L +G ++H +I         V+ SAL +
Sbjct: 166 LLYKKME--EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAF 261
           MY KCG +  ARQ+FDK+ D+DV +W+A+I  Y +  R  E   LF E+   S +RPN  
Sbjct: 224 MYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   V++ACA     E G+ VH Y+TR          ++L+ M+SKCG+++ +K++F+ M
Sbjct: 284 TILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSM 343

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              DL+SW S++ G+A +G+  +AL  F L+  +  QPD I F+GVLTAC+HAGLV +G 
Sbjct: 344 SYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + F+ I+  +G+   ++HY C+VDLL R+G   EA + I  MP++PD  +W S+LG CR+
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           + NL+L + AA  L ++EP N   Y+ ++NIYA
Sbjct: 464 YNNLELGEEAARFLLKLEPTNDGVYILLSNIYA 496



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 5/353 (1%)

Query: 94  SYNTMISGFTKGGSLE--QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           S N +I+     GSL    A ++F    + D  +W +M+  +V  N P  AL  Y  M  
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
              +V ++FT  S+L   + +   ++GK +HG +++    SD  + + L +MY  CG + 
Sbjct: 72  RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            AR +F++M  R+ V WT+MI  Y +     E   L+ ++ + G  P+  T A +++ACA
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           +     +G ++H ++  +     +   SALV+MY+KCG+++ +++VF+ +   D+ +W++
Sbjct: 192 ELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSA 251

Query: 332 LIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           LI GY +N    +AL+ F E+   S  +P+ +  + V++AC   G ++ G ++ H    +
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITR 310

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               ++      ++D+ ++ G    A+ +   M  K D   W S++ G  +HG
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALHG 362



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 39/231 (16%)

Query: 10  RLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           R  EALQ+  +++      P+     ++I  C Q   LE G+ VH ++  +     V ++
Sbjct: 261 RSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN 320

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+DM++KCG+I  A+ +FD M  +D+ S+N+M++GF                      
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFA--------------------- 359

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                + G  R     EAL  +R+MQ  +    ++ T   VL+A S    ++ GK++   
Sbjct: 360 -----LHGLGR-----EALAQFRLMQTTDLQ-PDEITFIGVLTACSHAGLVQEGKKLFYE 408

Query: 185 IMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           I    G       +  + D+  + G + EAR+    M +  D   W +M+G
Sbjct: 409 IEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLG 459


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 273/457 (59%), Gaps = 36/457 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC---GNISDA 80
           P    YSS++  C +   L  GK++HS +   G    V +   L+DMYAKC   G++ D+
Sbjct: 49  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 108

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLE-QARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           + +F++M E +V S+  +I+ + + G  + +A  LF             MISG++R    
Sbjct: 109 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELF-----------CKMISGHIR---- 153

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                             N F+ SSVL A   +     G++++ Y ++ G  S   V ++
Sbjct: 154 -----------------PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 196

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY + G + +AR+ FD + ++++VS+ A++  Y +  + EE F LF+E+  +GI  +
Sbjct: 197 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 256

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           AFTFA +L+  A   A   G+Q+HG + + GY       +AL+ MYS+CGN+E + +VFN
Sbjct: 257 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 316

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   +++SWTS+I G+A++G   +ALE F  +L++GT+P+ I +V VL+AC+H G++ +
Sbjct: 317 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 376

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G ++F+S+ ++HG+    +HYAC+VDLL RSG   EA + I+ MP+  D  +W +LLG C
Sbjct: 377 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 436

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           R+HGN +L + AAE + E EP++PA Y+ ++N++ASA
Sbjct: 437 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 473



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 201/369 (54%), Gaps = 18/369 (4%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  +FD+MP+R+  +WT MI+ + +     +A+DL+  M+     V ++FT SSVLSA +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME-LSGYVPDRFTYSSVLSACT 62

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC---GSINEARQIFDKMVDRDVVS 227
            +  L LGK++H  ++R G   D  V  +L DMY KC   GS++++R++F++M + +V+S
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 228 WTAMIGRYFQEGR-REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           WTA+I  Y Q G   +E   LF ++I   IRPN F+F+ VL AC + +    G+QV+ Y 
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            ++G    +   ++L+ MY++ G +E+++K F+ +   +LVS+ +++ GYA+N   ++A 
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IV 404
             F  +  +G       F  +L+     G + KG Q  H    K G  Y ++   C  ++
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGG--YKSNQCICNALI 299

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI----EP 460
            + +R G    A  V ++M  + +   W S++ G   HG    A RA E   ++      
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHG---FATRALEMFHKMLETGTK 355

Query: 461 ENPATYVTM 469
            N  TYV +
Sbjct: 356 PNEITYVAV 364



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 199/413 (48%), Gaps = 44/413 (10%)

Query: 12  KEALQILHQI--SHPSPS--IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++  ++   H  P+   +SS+++ C        G++V+S+    G      + N L
Sbjct: 138 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 197

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+ G + DA+  FD + E+++ SYN ++ G+ K    E+A  LF+E+         
Sbjct: 198 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT------ 251

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                       I A                 FT +S+LS  ++I  +  G++IHG +++
Sbjct: 252 ---------GIGISA-----------------FTFASLLSGAASIGAMGKGEQIHGRLLK 285

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G+ S++ + +AL  MY +CG+I  A Q+F++M DR+V+SWT+MI  + + G       +
Sbjct: 286 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 345

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           F +++++G +PN  T+  VL+AC+       G++    M +  G  P     + +V +  
Sbjct: 346 FHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLG 405

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVF 364
           + G +  + +  N MP   D + W +L+     +G  +      E++L+   +PD    +
Sbjct: 406 RSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAY 463

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           + +      AG     ++   S+KE++ +      +   +++  R  RFH  E
Sbjct: 464 ILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW---IEVENRVHRFHVGE 513



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +D      + +EA  + ++I+     I    ++SL+       A+ +G+++H  L   G+
Sbjct: 229 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY 288

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           K    I N L+ MY++CGNI  A  +F+EM++R+V S+ +MI+GF K G   +A  +F +
Sbjct: 289 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 348

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +                 +P                  N+ T  +VLSA S +  +  
Sbjct: 349 MLETG--------------TKP------------------NEITYVAVLSACSHVGMISE 376

Query: 178 G-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRY 235
           G K  +      G       ++ + D+ G+ G + EA +  + M +  D + W  ++G  
Sbjct: 377 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 436

Query: 236 FQEGRREEG 244
              G  E G
Sbjct: 437 RVHGNTELG 445


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 167/512 (32%), Positives = 283/512 (55%), Gaps = 48/512 (9%)

Query: 11  LKEALQILHQISHPS----PSIYSSLIQFCRQN--------RALEEGKKVHSHLKSSGFK 58
           + +AL++  ++S       P   SS++  C Q         RA++  + +H+ +   GF 
Sbjct: 224 VDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFG 283

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA------- 111
               + N L+D+YAK   + +A  +F+ +    + S+N +I+G+ + G  E+A       
Sbjct: 284 SDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFM 343

Query: 112 ----------------------------RNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                       R +FD++P+    +W  ++SGY +     E +
Sbjct: 344 QESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETI 403

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+R MQ+ +N   ++ TL+ +LS+ S +    LGK++H   +R    +D  V S L D+
Sbjct: 404 DLFRRMQH-QNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDI 462

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  IF+ M +RDVV W +MI         EE F    ++ ++G+ P   ++
Sbjct: 463 YSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSY 522

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A ++N CA  ++   G+Q+H  + + GYD   +   +L+ MY+K GN+++++  FN M  
Sbjct: 523 ASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIV 582

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            +LV+W  +I GYAQNG  +KA+E FE +L +  +PD + F+ VLT C+H+GLVD+ + +
Sbjct: 583 KNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTF 642

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+S++  +G+T   +HY C++D LAR+ RF E E VI KMP K D  LW  LL  C +H 
Sbjct: 643 FNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHH 702

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N +L + +A+ LF ++P+NP+ YV ++NIYA+
Sbjct: 703 NAELGEFSAKHLFRLDPKNPSPYVLLSNIYAT 734



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 208/423 (49%), Gaps = 23/423 (5%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           K  H+ + ++G     F+ N L+++Y+  G    A   F  +   +V SYN  IS   + 
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G L  AR+L   MP R+  SW  +I+   R   P EAL++Y+ M   E      FTL+SV
Sbjct: 90  GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQ-EGLAPTNFTLASV 148

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           LSA  A+  L  G+  HG  ++ G D  + V + L  MY KCGS+ +A ++FD M   + 
Sbjct: 149 LSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNE 208

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE--------E 277
           VS+TAM+G   Q G  ++   LF+ + ++GIR +    + VL ACA   A         +
Sbjct: 209 VSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQ 268

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           L + +H  + R G+       ++LV +Y+K   ++ + KVF  +    +VSW  LI GY 
Sbjct: 269 LAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYG 328

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           Q G  ++A+E  E + +SG +P+ + +  +L +C  A  V      F  I +    T+  
Sbjct: 329 QLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNT 388

Query: 398 DHYACIVDLLARSGR---FHEAEDVISKMP---MKPDKFLWASLLGGCRIHGNLDLAKRA 451
                   LL+  G+     E  D+  +M    ++PD+   A +L  C   GN +L K+ 
Sbjct: 389 --------LLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQV 440

Query: 452 AEA 454
             A
Sbjct: 441 HSA 443



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/491 (26%), Positives = 224/491 (45%), Gaps = 52/491 (10%)

Query: 13  EALQI----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL++    L +   P+    +S++  C    AL++G++ H      G     F+ N LL
Sbjct: 125 EALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLL 184

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNF 124
            MY KCG+++DA  LFD M   +  S+  M+ G  +GG+++ A  LF  M +     D  
Sbjct: 185 GMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPV 244

Query: 125 SWTAMISGYVR-----YN--------QPIEAL-----------------DLYRMMQNFEN 154
           + ++++    +     YN        Q I AL                 DLY      + 
Sbjct: 245 AVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDE 304

Query: 155 SVSNKFTLSSV--------LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           ++    +LSSV        ++    + C     E+  ++  +GF+ +EV +S +     K
Sbjct: 305 AIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIK 364

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
              +  AR +FDK+    V +W  ++  Y QE   +E   LF  +    ++P+  T A +
Sbjct: 365 ARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVI 424

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L++C+     ELGKQVH    R+      F AS L+ +YSKCG V  +  +FN M   D+
Sbjct: 425 LSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDV 484

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V W S+I+G A + + ++A ++ + + ++G  P    +  ++  C     + +G Q  H+
Sbjct: 485 VCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQ-MHA 543

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              K G          ++D+ A+SG   +A    + M +K +   W  ++ G   +G   
Sbjct: 544 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVK-NLVAWNEMIHGYAQNG--- 599

Query: 447 LAKRAAEALFE 457
             ++A E LFE
Sbjct: 600 FGEKAVE-LFE 609



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 138/278 (49%), Gaps = 12/278 (4%)

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G +  AR +  +M DR+ VSW  +I    + G   E   ++  +++ G+ P  FT A 
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLAS 147

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL+AC   AA + G++ HG   ++G D + F  + L+ MY+KCG+V ++ ++F+GMP P+
Sbjct: 148 VLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPN 207

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL---- 381
            VS+T+++ G AQ G  D AL  F  + ++G + D +    VL AC  A   D  +    
Sbjct: 208 EVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAI 267

Query: 382 ---QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              Q  H++  + G          +VDL A+  +  EA  V   +        W  L+ G
Sbjct: 268 QLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLS-SVSIVSWNILITG 326

Query: 439 CRIHGNLDLAKRAAEAL-FEIEPENPATYVTMANIYAS 475
              +G L   +RA E L F  E       VT +N+ AS
Sbjct: 327 ---YGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLAS 361


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/508 (33%), Positives = 266/508 (52%), Gaps = 70/508 (13%)

Query: 8   QRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
            R+L EA ++  Q+      P+   + SL+  C    AL  G+++HSH+   G +  + +
Sbjct: 236 HRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIV 295

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +N L+ MY KC                                S+++AR +FD M +RD 
Sbjct: 296 ANALITMYCKCN-------------------------------SVQEAREIFDRMSKRDV 324

Query: 124 FSWTAMISGYVR--YNQPIEALDLYRMMQNF--ENSVSNKFTLSSVLSAVSAIQCLRLGK 179
            SW+AMI+GY +  Y       +++++++    E    NK T  S+L A +A   L  G+
Sbjct: 325 ISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGR 384

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA--------- 230
           +IH  + + GF+ D  + +A+ +MY KCGSI EA Q+F KM +++VV+WT+         
Sbjct: 385 QIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCG 444

Query: 231 ----------------------MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
                                 MI  Y Q G   + F L S +   G +P+  T   +L 
Sbjct: 445 DLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILE 504

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC   A  E GK VH    ++G +  +  A++L+ MYSKCG V  ++ VF+ M   D V+
Sbjct: 505 ACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVA 564

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W +++AGY Q+G   +A++ F+ +LK    P+ I    V++AC+ AGLV +G + F  ++
Sbjct: 565 WNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQ 624

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           E   +T    HY C+VDLL R+GR  EAE+ I  MP +PD  +W +LLG C+ H N+ LA
Sbjct: 625 EDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLA 684

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           +RAA  + E+EP   + Y+T++NIYA A
Sbjct: 685 ERAAHHILELEPSYASVYITLSNIYAQA 712



 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/480 (31%), Positives = 246/480 (51%), Gaps = 48/480 (10%)

Query: 5   LCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           LC   RL+EA+Q+L  I       + + Y  +I+ C + R  E+GK VH  L   G +  
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +++ N L++ Y+K  +++ A+                                +F  M  
Sbjct: 91  IYLGNSLINFYSKFEDVASAE-------------------------------QVFRRMTL 119

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RD  +W++MI+ Y   N P +A D +  M +  N   N+ T  S+L A +    L  G++
Sbjct: 120 RDVVTWSSMIAAYAGNNHPAKAFDTFERMTD-ANIEPNRITFLSILKACNNYSILEKGRK 178

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH  +   G ++D  V +AL  MY KCG I+ A ++F KM +R+VVSWTA+I    Q  +
Sbjct: 179 IHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRK 238

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E F L+ +++++GI PNA TF  +LN+C    A   G+++H +++  G +     A+A
Sbjct: 239 LNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANA 298

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK-----ALEYFELLLKS 355
           L+ MY KC +V+ ++++F+ M + D++SW+++IAGYAQ+G  DK       +  E + + 
Sbjct: 299 LITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRRE 358

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P+ + F+ +L ACT  G +++G Q  H+   K G          I ++ A+ G  +E
Sbjct: 359 GVFPNKVTFMSILRACTAHGALEQGRQ-IHAELSKVGFELDRSLQTAIFNMYAKCGSIYE 417

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIYA 474
           AE V SKM  K +   W S L      G+L     +AE +F E+   N  ++  M   YA
Sbjct: 418 AEQVFSKMANK-NVVAWTSFLSMYIKCGDLS----SAEKVFSEMPTRNVVSWNLMIAGYA 472



 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 231/467 (49%), Gaps = 74/467 (15%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + S+++ C     LE+G+K+H+ +K+ G +  V ++  L+ MY+KCG IS A  +
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +M ER+V S+  +I    +   L +A  L+++M Q       A IS            
Sbjct: 215 FHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ-------AGIS------------ 255

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         N  T  S+L++ +  + L  G+ IH +I   G ++D +V +AL  M
Sbjct: 256 -------------PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITM 302

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR-----EEGFALFSELIKSGIRP 258
           Y KC S+ EAR+IFD+M  RDV+SW+AMI  Y Q G +     +E F L   + + G+ P
Sbjct: 303 YCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFP 362

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV------- 311
           N  TF  +L AC  H A E G+Q+H  ++++G++      +A+ +MY+KCG++       
Sbjct: 363 NKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVF 422

Query: 312 ------------------------ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
                                    +++KVF+ MP  ++VSW  +IAGYAQNG   K  E
Sbjct: 423 SKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFE 482

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
               +   G QPD +  + +L AC     +++G +  H+   K GL         ++ + 
Sbjct: 483 LLSSMKAEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMY 541

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN----LDLAKR 450
           ++ G+  EA  V  KM  + D   W ++L G   HG+    +DL KR
Sbjct: 542 SKCGQVAEARTVFDKMSNR-DTVAWNAMLAGYGQHGDGLEAVDLFKR 587



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 123/242 (50%), Gaps = 5/242 (2%)

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           + R  + GR  E   L   + + G+  N+ T+  V+  CA     E GK VH  +  +G 
Sbjct: 28  VWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGV 87

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           +   +  ++L++ YSK  +V ++++VF  M   D+V+W+S+IA YA N  P KA + FE 
Sbjct: 88  EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 147

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +  +  +P+ I F+ +L AC +  +++KG +  H+I +  G+         ++ + ++ G
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCG 206

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTM 469
               A +V  KM  + +   W +++     H  L+ A    E + +  I P N  T+V++
Sbjct: 207 EISVACEVFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP-NAVTFVSL 264

Query: 470 AN 471
            N
Sbjct: 265 LN 266


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 264/451 (58%), Gaps = 37/451 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y + I  C   RAL EG++VH+ + ++G++P ++++  L+ MYA+CG             
Sbjct: 38  YDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCG------------- 84

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                             +LE A N+ D MP+R+  SWTAMISGY +  +P EA DL+ M
Sbjct: 85  ------------------ALEDAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIM 126

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLG--KEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           M        N+FTL+SVL++ +  Q +     K++H + ++  F+    V S+L DMY +
Sbjct: 127 MLR-AGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYAR 185

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
             +I EAR++FD +  RDVVS+T ++  Y + G  EE   LF +L   G++ N  TF+ +
Sbjct: 186 SENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVL 245

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           LNA +  ++ + GKQVHG + R     +    ++L+ MYSKCG +  S++VF+ MP   +
Sbjct: 246 LNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSV 305

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF-H 385
           VSW +++ GY ++GM  + ++ F  +     +PD +  + VL   +H GLVD+GL  F H
Sbjct: 306 VSWNAMLMGYGRHGMAYEVVQLFRFMCDK-VKPDSVTLLAVLLGYSHGGLVDEGLDMFDH 364

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +KE+  L  T  HY C++DLL RSG+  +A  +I KMP +P + +W SLLG CR+H N+
Sbjct: 365 IVKEQSTLLNT-QHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANV 423

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
            + +  A+ LF+IEPEN   YV ++NIYA+A
Sbjct: 424 HVGEFVAQKLFDIEPENAGNYVILSNIYAAA 454


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 260/453 (57%), Gaps = 35/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL++ C      + GK +H  +        ++I   LL+MYA CG+       
Sbjct: 77  PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGD------- 129

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   L+ AR LF+ M  R+   WT+MISGY++ + P EAL
Sbjct: 130 ------------------------LKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEAL 165

Query: 144 DLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            LY+ M+  E+  S ++ T+++++SA + ++ L +G ++H +I         V+ SAL +
Sbjct: 166 LLYKKME--EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAF 261
           MY KCG +  ARQ+FD++ D+DV +W+A+I  Y +  R  E   LF E+   S +RPN  
Sbjct: 224 MYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   V++ACA     E G+ VH Y+TR          ++L+ M+SKCG+++ +K++F+ M
Sbjct: 284 TILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSM 343

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              DL+SW S++ G A +G+  +AL  F L+  +  QPD I F+GVLTAC+HAGLV +G 
Sbjct: 344 SYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + F+ I+  +G+   ++HY C+VDLL R+G   EA + I  MP++PD  +W S+LG CR+
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           + NL+L + AA  L E+EP N   Y+ ++NIYA
Sbjct: 464 YNNLELGEEAARCLLELEPTNDGVYILLSNIYA 496



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 184/353 (52%), Gaps = 5/353 (1%)

Query: 94  SYNTMISGFTKGGSLE--QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           S N +I+     GSL    A ++F      D  +W +M+  +V  N P  AL  Y  M  
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
              +V ++FT  S+L   + +   ++GK +HG +++    SD  + + L +MY  CG + 
Sbjct: 72  RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            AR +F++M  R+ V WT+MI  Y +     E   L+ ++ + G  P+  T A +++ACA
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           +     +G ++H ++  +     +   SALV+MY+KCG+++ +++VF+ +   D+ +W++
Sbjct: 192 ELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSA 251

Query: 332 LIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           LI GY +N    +AL+ F E+   S  +P+ +  + V++AC   G ++ G ++ H    +
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITR 310

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               ++      ++D+ ++ G    A+ +   M  K D   W S++ G  +HG
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALHG 362



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 10  RLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           R  EALQ+  +++      P+     ++I  C Q   LE G+ VH ++  +     V ++
Sbjct: 261 RSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN 320

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           N L+DM++KCG+I  A+ +FD M  +D+ S+N+M++G    G   +A   F  M   D
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTD 378


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 267/470 (56%), Gaps = 47/470 (10%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ++ +A ++ +++ + +   ++++I    QN  ++    +   +        V   N ++ 
Sbjct: 130 KISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERN----VVSWNTVMS 185

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           M A+CG I +A+ LFD M ERDV S+  MI+G +K G +++AR LFD MP+R+  SW AM
Sbjct: 186 MLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAM 245

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+GY +  +  EALDL+  M                                        
Sbjct: 246 ITGYAQNLRLDEALDLFERMP--------------------------------------- 266

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
            + D   W+ +     + G +  AR++F++M  ++V+SWT MI    QEG  EE   +FS
Sbjct: 267 -ERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFS 325

Query: 250 ELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++ + G +PN  TF  VL AC++ A    G+QVH  +++  Y   +F  SAL++MYSKC
Sbjct: 326 RMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKC 385

Query: 309 GNVENSKKVFN-GMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           G +  ++K+F+ GM  + DLVSW  +IA YA +G   +A+ +F+ + KSG +PD + +VG
Sbjct: 386 GELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVG 445

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L+AC+HAGLV++GL+YF  + +   +    DHYAC+VDL  R+GR  EA   I ++  K
Sbjct: 446 LLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETK 505

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P   +W +LL GC +H N+ + K+AA+ L E+EPEN  TY+ ++NIYAS 
Sbjct: 506 PSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYAST 555



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 198/382 (51%), Gaps = 21/382 (5%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN- 123
           N ++   +K G I +A+ LFDEM+E DV ++ T+ISG+ K G +E+AR LFD +  + N 
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNV 115

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +WTAM+ GY+R N+  +A  L+  M N      N  + ++++   +  Q  R+   +  
Sbjct: 116 VTWTAMVGGYIRSNKISDAEKLFNEMPN-----KNVVSWNTMIDGYA--QNGRIDSAM-- 166

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y+     + + V W+ +  M  +CG I EAR++FD+M +RDV+SWTAMI    + GR +E
Sbjct: 167 YLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDE 226

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF  + +     N  ++  ++   A +   +    +   M       ++   + L+ 
Sbjct: 227 ARLLFDRMPER----NVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLI- 281

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQPDHI 362
              + G++  ++K+FN MP+ +++SWT++I G  Q G  ++AL+ F  +L + G +P+  
Sbjct: 282 ---QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQG 338

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            FV VL AC++   + +G Q  H I  K     +    + ++++ ++ G    A  +   
Sbjct: 339 TFVSVLGACSNLAGLGEG-QQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDD 397

Query: 423 -MPMKPDKFLWASLLGGCRIHG 443
            M  + D   W  ++     HG
Sbjct: 398 GMTSQRDLVSWNGIIAAYAHHG 419


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 167/512 (32%), Positives = 283/512 (55%), Gaps = 48/512 (9%)

Query: 11  LKEALQILHQISHPS----PSIYSSLIQFCRQN--------RALEEGKKVHSHLKSSGFK 58
           + +AL++  ++S       P   SS++  C Q         RA++  + +H+ +   GF 
Sbjct: 123 VDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFG 182

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA------- 111
               + N L+D+YAK   + +A  +F+ +    + S+N +I+G+ + G  E+A       
Sbjct: 183 SDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFM 242

Query: 112 ----------------------------RNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                       R +FD++P+    +W  ++SGY +     E +
Sbjct: 243 QESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETI 302

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+R MQ+ +N   ++ TL+ +LS+ S +    LGK++H   +R    +D  V S L D+
Sbjct: 303 DLFRRMQH-QNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDI 361

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  IF+ M +RDVV W +MI         EE F    ++ ++G+ P   ++
Sbjct: 362 YSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSY 421

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A ++N CA  ++   G+Q+H  + + GYD   +   +L+ MY+K GN+++++  FN M  
Sbjct: 422 ASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIV 481

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            +LV+W  +I GYAQNG  +KA+E FE +L +  +PD + F+ VLT C+H+GLVD+ + +
Sbjct: 482 KNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTF 541

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+S++  +G+T   +HY C++D LAR+ RF E E VI KMP K D  LW  LL  C +H 
Sbjct: 542 FNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHH 601

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N +L + +A+ LF ++P+NP+ YV ++NIYA+
Sbjct: 602 NAELGEFSAKHLFRLDPKNPSPYVLLSNIYAT 633



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 174/351 (49%), Gaps = 23/351 (6%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP R+  SW  +I+   R   P EAL++Y+ M   E      FTL+SVLSA  A+  L  
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQ-EGLAPTNFTLASVLSACGAVAALDD 59

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+  HG  ++ G D  + V + L  MY KCGS+ +A ++FD M   + VS+TAM+G   Q
Sbjct: 60  GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 119

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE--------ELGKQVHGYMTRI 289
            G  ++   LF+ + ++GIR +    + VL ACA   A         +L + +H  + R 
Sbjct: 120 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRK 179

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G+       ++LV +Y+K   ++ + KVF  +    +VSW  LI GY Q G  ++A+E  
Sbjct: 180 GFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVL 239

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           E + +SG +P+ + +  +L +C  A  V      F  I +    T+          LL+ 
Sbjct: 240 EFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNT--------LLSG 291

Query: 410 SGR---FHEAEDVISKMP---MKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
            G+     E  D+  +M    ++PD+   A +L  C   GN +L K+   A
Sbjct: 292 YGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSA 342



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/491 (26%), Positives = 224/491 (45%), Gaps = 52/491 (10%)

Query: 13  EALQI----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL++    L +   P+    +S++  C    AL++G++ H      G     F+ N LL
Sbjct: 24  EALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLL 83

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNF 124
            MY KCG+++DA  LFD M   +  S+  M+ G  +GG+++ A  LF  M +     D  
Sbjct: 84  GMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPV 143

Query: 125 SWTAMISGYVR-----YN--------QPIEAL-----------------DLYRMMQNFEN 154
           + ++++    +     YN        Q I AL                 DLY      + 
Sbjct: 144 AVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDE 203

Query: 155 SVSNKFTLSSV--------LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           ++    +LSSV        ++    + C     E+  ++  +GF+ +EV +S +     K
Sbjct: 204 AIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIK 263

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
              +  AR +FDK+    V +W  ++  Y QE   +E   LF  +    ++P+  T A +
Sbjct: 264 ARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVI 323

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L++C+     ELGKQVH    R+      F AS L+ +YSKCG V  +  +FN M   D+
Sbjct: 324 LSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDV 383

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V W S+I+G A + + ++A ++ + + ++G  P    +  ++  C     + +G Q  H+
Sbjct: 384 VCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQ-MHA 442

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              K G          ++D+ A+SG   +A    + M +K +   W  ++ G   +G   
Sbjct: 443 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVK-NLVAWNEMIHGYAQNG--- 498

Query: 447 LAKRAAEALFE 457
             ++A E LFE
Sbjct: 499 FGEKAVE-LFE 508



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%)

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M DR+ VSW  +I    + G   E   ++  +++ G+ P  FT A VL+AC   AA + G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           ++ HG   ++G D + F  + L+ MY+KCG+V ++ ++F+GMP P+ VS+T+++ G AQ 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-------QYFHSIKEKHG 392
           G  D AL  F  + ++G + D +    VL AC  A   D  +       Q  H++  + G
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKG 180

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
                     +VDL A+  +  EA  V   +        W  L+ G   +G L   +RA 
Sbjct: 181 FGSDQHVGNSLVDLYAKGMKMDEAIKVFESLS-SVSIVSWNILITG---YGQLGCYERAM 236

Query: 453 EAL-FEIEPENPATYVTMANIYAS 475
           E L F  E       VT +N+ AS
Sbjct: 237 EVLEFMQESGFEPNEVTYSNMLAS 260


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 256/444 (57%), Gaps = 34/444 (7%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           ++ C  + AL  G+++H+     GF    F++N L  MY KC                  
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC------------------ 265

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                        G LE    LF++M  RD  SWT +I+  V+  Q   A+  +  M+  
Sbjct: 266 -------------GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMR-- 310

Query: 153 ENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
           E+ VS N++T ++V+S  + +  +  G+++H  I+  G  +   V +++  MY KCG + 
Sbjct: 311 ESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLT 370

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            +  IF +M  RD+VSW+ +I  Y Q G   E F L S +   G +P  F  A VL+AC 
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           + A  E GKQ+H Y+  IG +  +   SAL++MY KCG++E + ++F+     D+VSWT+
Sbjct: 431 NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTA 490

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I GYA++G   + ++ FE + + G +PD + F+GVL+AC+HAGLVD G +YF+++ +K+
Sbjct: 491 MINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKY 550

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            ++ + +HY C++DLL R+GR  +AE +I  MP   D  +W++LL  CR+HG+++  +R 
Sbjct: 551 QISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRT 610

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           AE + ++EP    T++T+ANIYAS
Sbjct: 611 AERILQLEPNCAGTHITLANIYAS 634



 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 211/441 (47%), Gaps = 43/441 (9%)

Query: 4   ILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           +L    R++  L+I        P I S   + C  N  +  G+ +H +   +G    VF+
Sbjct: 101 LLFKNMRVESGLRI-------DPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFV 153

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            + LLDMY                               TK G + + R +F EMP R+ 
Sbjct: 154 GSALLDMY-------------------------------TKNGKIFEGRRVFHEMPMRNV 182

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIH 182
            SWTA+I+G VR     EAL  +  M  + + V  + +T +  L A +    L  G+EIH
Sbjct: 183 VSWTAIITGLVRAGYNKEALVYFSEM--WRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
              M+ GFD    V + L+ MY KCG +     +F+KM  RDVVSWT +I    Q G+ E
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F  + +S + PN +TFA V++ CA+ A  E G+Q+H  +  +G        ++++
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY+KCG + +S  +F+ M R D+VSW+++IAGY+Q G   +A E    +   G +P   
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               VL+AC +  +++ G Q  H+     GL +TA   + ++++  + G   EA  +   
Sbjct: 421 ALASVLSACGNMAILEHGKQ-LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDA 479

Query: 423 MPMKPDKFLWASLLGGCRIHG 443
                D   W +++ G   HG
Sbjct: 480 AE-NDDIVSWTAMINGYAEHG 499



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           + + D+   N  +    K G L  AR +FD+M Q+D  SWT +ISGYV  N   EAL L+
Sbjct: 44  ISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF 103

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           + M+       + F LS    A      +  G+ +HGY ++TG  +   V SAL DMY K
Sbjct: 104 KNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTK 163

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G I E R++F +M  R+VVSWTA+I    + G  +E    FSE+ +S +  +++TFA  
Sbjct: 164 NGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIA 223

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L ACAD  A   G+++H    + G+D  SF A+ L  MY+KCG +E    +F  M   D+
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDV 283

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSWT++I    Q G  + A++ F  + +S   P+   F  V++ C +   ++ G Q  H+
Sbjct: 284 VSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ-LHA 342

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +    GL  +      I+ + A+ G+   +  +  +M  + D   W++++ G    G++ 
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT-RRDIVSWSTIIAGYSQGGHV- 400

Query: 447 LAKRAAEALFEIEPENP 463
               A E L  +  E P
Sbjct: 401 --SEAFELLSWMRMEGP 415



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 171/334 (51%), Gaps = 36/334 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++++I  C     +E G+++H+ +   G    + + N ++ MYAKCG ++ +  +
Sbjct: 316 PNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVI 375

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F EM  RD+ S++T+I+G+++GG + +A  L          SW  M              
Sbjct: 376 FHEMTRRDIVSWSTIIAGYSQGGHVSEAFEL---------LSWMRM-------------- 412

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                    E     +F L+SVLSA   +  L  GK++H Y++  G +   +V SAL +M
Sbjct: 413 ---------EGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINM 463

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGSI EA +IFD   + D+VSWTAMI  Y + G   E   LF ++ + G+RP++ TF
Sbjct: 464 YCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTF 523

Query: 264 AGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            GVL+AC+     +LG +    M+ +    P       ++ +  + G + +++ +   MP
Sbjct: 524 IGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMP 583

Query: 323 --RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
             R D+V W++L+     +G  ++     E +L+
Sbjct: 584 FHRDDVV-WSTLLRACRVHGDVERGRRTAERILQ 616



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 108/224 (48%), Gaps = 21/224 (9%)

Query: 11  LKEALQILH--QISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           + EA ++L   ++  P P+ ++  S++  C     LE GK++H+++ S G +    + + 
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRD 122
           L++MY KCG+I +A  +FD  +  D+ S+  MI+G+ + G   +  +LF+++P    + D
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-----RL 177
           + ++  ++S             L  +   + N++S K+ +S        +  L     RL
Sbjct: 520 SVTFIGVLSA-------CSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
               H  I    F  D+VVWS L       G +   R+  ++++
Sbjct: 573 SDAEH-MIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERIL 615


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 264/484 (54%), Gaps = 70/484 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S +  C + + L+ G ++H  +  S +   VF+ + L+D Y+KCG +           
Sbjct: 159 FGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVG---------- 208

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
               C                 AR +FD M +++  SW  +I+ Y +    IEAL+ +  
Sbjct: 209 ----C-----------------ARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGR 247

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKC 207
           M        ++ TL+SV+SA + +   + G +IH  ++++  F +D ++ +AL DMY KC
Sbjct: 248 MTEL-GFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKC 306

Query: 208 GSINEARQIFDKMVDR-------------------------------DVVSWTAMIGRYF 236
           G +NEAR +FD+M  R                               D+VSW A+I  Y 
Sbjct: 307 GRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYT 366

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY----- 291
           Q G  EE   LF  L +  + P  +TF  +LNA A+ A  ELG+Q H ++ + G+     
Sbjct: 367 QNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSG 426

Query: 292 -DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
            +P  F  ++L+ MY KCG+VE   +VF  M   D VSW ++I GYAQNG   +ALE F+
Sbjct: 427 EEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQ 486

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +L+SG +PDH+  +G L AC+HAGLV++G +YF S+ ++HGL    DHY C+VDLL R+
Sbjct: 487 KMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRA 546

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   EA+D+I  MP +PD  +W+SLL  C++H N+ L K  AE +FEI+P +   YV +A
Sbjct: 547 GCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLA 606

Query: 471 NIYA 474
           N+Y+
Sbjct: 607 NMYS 610



 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 45/452 (9%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S ++ L+  C + R+  + + VH  L  + F   VFI N L+D+Y KCG +  A+ +FD 
Sbjct: 25  SPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDR 84

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M ER+V S+N++IS   + G ++++  LF  MP++D  SW +MI+G+ ++++  EALD +
Sbjct: 85  MSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWF 144

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M   ++ V N ++  S LSA S ++ L+LG +IHG I ++ +  D  + S L D Y K
Sbjct: 145 VRMHR-DDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSK 203

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG +  AR++FD M +++VVSW  +I  Y Q G   E    F  + + G +P+  T A V
Sbjct: 204 CGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASV 263

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYS---FAASALVHMYSKCGNVENSKKVFNGMP- 322
           ++ACA  AA + G Q+H  + +   D +       +ALV MY+KCG V  ++ VF+ MP 
Sbjct: 264 VSACATLAAFKEGVQIHARVVK--SDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPV 321

Query: 323 ------------------------------RPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                                         + D+VSW +LIAGY QNG  ++AL  F +L
Sbjct: 322 RNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRML 381

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI------VDL 406
            +    P H  F  +L A  +   ++ G Q  HS   KHG  + +     I      +D+
Sbjct: 382 KRESVCPTHYTFGNLLNASANLADLELGRQA-HSHVVKHGFRFQSGEEPDIFVGNSLIDM 440

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             + G   E   V   M ++ D   W +++ G
Sbjct: 441 YMKCGSVEEGLRVFENM-VEKDHVSWNTMIIG 471



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 193/336 (57%), Gaps = 14/336 (4%)

Query: 13  EALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNCL 67
           EAL+   +++     P     +S++  C    A +EG ++H+  +KS  F+  + + N L
Sbjct: 240 EALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNAL 299

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG +++A+ +FD M  R+  S  TM+SG+ K  S++ AR++F  + Q+D  SW 
Sbjct: 300 VDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWN 359

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           A+I+GY +  +  EAL L+RM++  E+     +T  ++L+A + +  L LG++ H ++++
Sbjct: 360 ALIAGYTQNGENEEALGLFRMLKR-ESVCPTHYTFGNLLNASANLADLELGRQAHSHVVK 418

Query: 188 TGF------DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
            GF      + D  V ++L DMY KCGS+ E  ++F+ MV++D VSW  MI  Y Q G  
Sbjct: 419 HGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYG 478

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASA 300
            E   LF ++++SG +P+  T  G L AC+     E G++    MT+  G  P     + 
Sbjct: 479 MEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTC 538

Query: 301 LVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAG 335
           +V +  + G +E +K +   MP+ PD V W+SL++ 
Sbjct: 539 MVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSA 574



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 137/339 (40%), Gaps = 87/339 (25%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK------PGV 61
           +EAL +   +      P+   + +L+        LE G++ HSH+   GF+      P +
Sbjct: 372 EEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDI 431

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+ N L+DMY KCG++ +   +F+ M E+D  S+NTMI G+ + G               
Sbjct: 432 FVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNG--------------- 476

Query: 122 DNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                             +EAL+L+ +M+++ E    +  T+   L A S    +  G+ 
Sbjct: 477 ----------------YGMEALELFQKMLESGEK--PDHVTMIGTLCACSHAGLVEEGRR 518

Query: 181 IHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
               + +  G    +  ++ + D+ G+ G + EA+ + + M                   
Sbjct: 519 YFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPK----------------- 561

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
                            +P+A  ++ +L+AC  H    LGK V   +  I  DP S    
Sbjct: 562 -----------------QPDAVVWSSLLSACKVHRNITLGKYVAEKIFEI--DPTSSGPY 602

Query: 300 ALV-HMYSKCGNVENSKKVFNGMPRPDLV-----SWTSL 332
            L+ +MYS+ G   ++  V   M R  +V     SW  +
Sbjct: 603 VLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDI 641


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 272/467 (58%), Gaps = 42/467 (8%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           QR L+E L+       P     SS++       +L  G+ +H ++   G    + + + L
Sbjct: 440 QRMLQEGLR-------PDKFCSSSVLSIID---SLSLGRLIHCYILKIGLFTDISVGSSL 489

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
             MY+KCG                               SLE++  +F++MP +DN SW 
Sbjct: 490 FTMYSKCG-------------------------------SLEESYTVFEQMPDKDNVSWA 518

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI+G+  ++   +A+ L+R M   E    ++ TL++ L+A SA+  L  GKE+HGY +R
Sbjct: 519 SMITGFSEHDHAEQAVQLFREML-LEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALR 577

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
                + +V  AL +MY KCG+I  AR++FD +  +D  S ++++  Y Q G  E+   L
Sbjct: 578 ARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLL 637

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F E+  + +  ++FT + V+ A A   + ++G Q+H  +T++G +      S+LV MYSK
Sbjct: 638 FHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSK 697

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+++   KVF  + +PDL+SWT++I  YAQ+G   +AL+ ++L+ K GT+PD + FVGV
Sbjct: 698 CGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGV 757

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC+H G+V++G  + +S+ +++G+     HYAC+VDLL RSGR  EAE  I+ MP++P
Sbjct: 758 LSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEP 817

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           D  LW  LL  C++HG+++L + AA+ + E+EP     YVT++NI A
Sbjct: 818 DALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICA 864



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 227/464 (48%), Gaps = 15/464 (3%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C    +  AL++  +  HP+   ++ LI  C QN + E+  +    ++ SGF P  F   
Sbjct: 92  CKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYG 151

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDEMPQR 121
            +L      G+    + ++    +    S       MI  F K  S E A  +F ++   
Sbjct: 152 SVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCE 211

Query: 122 DNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +   W A+ISG V+  +   ALDL+ +M   F   + N FT SS+L+A +A++ L  G+ 
Sbjct: 212 NVVCWNAIISGAVKNRENWVALDLFCQMCCRF--FMPNSFTFSSILTACAALEELEFGRG 269

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           + G++++ G   D  V +A+ D+Y KC  +++A + F +M  R+VVSWT +I  + Q+  
Sbjct: 270 VQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDD 329

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
               F  F E+ K G + N +T   VL AC +    +   Q+H ++ + G+   S  +SA
Sbjct: 330 SISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSA 389

Query: 301 LVHMYSKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           L++MYSK G V+ S++VF  M    +L  W  +I+ +AQ+G   +A+E F+ +L+ G +P
Sbjct: 390 LINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRP 449

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D      VL+      L     +  H    K GL       + +  + ++ G   E+  V
Sbjct: 450 DKFCSSSVLSIIDSLSLG----RLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTV 505

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF--EIEPE 461
             +MP K D   WAS++ G   H + + A +    +   EI P+
Sbjct: 506 FEQMPDK-DNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPD 548



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 216/453 (47%), Gaps = 59/453 (13%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           A+D+ C         Q+  +   P+   +SS++  C     LE G+ V   +   G    
Sbjct: 232 ALDLFC---------QMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGED 282

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           VF+   ++D+YAKC ++  A   F  M  R+V S+ T+ISGF                 Q
Sbjct: 283 VFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFV----------------Q 326

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +D+                I A   ++ M+     ++N +T++SVL+A +    ++   +
Sbjct: 327 KDD---------------SISAFHFFKEMRKVGEKINN-YTITSVLTACTEPVMIKEAVQ 370

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEG 239
           +H +I +TGF  D  V SAL +MY K G ++ + ++F +M   +++  W  MI  + Q G
Sbjct: 371 LHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSG 430

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
                  LF  +++ G+RP+ F  + VL+     +   LG+ +H Y+ +IG        S
Sbjct: 431 STGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLS---LGRLIHCYILKIGLFTDISVGS 487

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +L  MYSKCG++E S  VF  MP  D VSW S+I G++++   ++A++ F  +L    +P
Sbjct: 488 SLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRP 547

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD------HYACIVDLLARSGRF 413
           D +     LTAC+    ++KG       KE HG    A           +V++ ++ G  
Sbjct: 548 DQMTLTAALTACSALHSLEKG-------KEVHGYALRARVGKEVLVGGALVNMYSKCGAI 600

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
             A  V   +P K D+F  +SL+ G   +G ++
Sbjct: 601 VLARRVFDMLPQK-DQFSCSSLVSGYAQNGYIE 632



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 174/343 (50%), Gaps = 6/343 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNFE 153
           N+++  + K  S+  A  LFD+ P  +  SW  +ISG    NQ     D +R      F 
Sbjct: 85  NSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGC---NQNFSFEDSWRNFCKMRFS 141

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
               N+FT  SVLSA +A+     G+ ++   ++ GF S+  V + + D++ K  S  +A
Sbjct: 142 GFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDA 201

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
            ++F  ++  +VV W A+I    +         LF ++      PN+FTF+ +L ACA  
Sbjct: 202 LRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAAL 261

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
              E G+ V G++ + G     F  +A++ +Y+KC +++ + K F  MP  ++VSWT++I
Sbjct: 262 EELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTII 321

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           +G+ Q      A  +F+ + K G + ++     VLTACT   ++ + +Q  HS   K G 
Sbjct: 322 SGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQ-LHSWIFKTGF 380

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
              ++  + ++++ ++ G    +E V  +M    +  +WA ++
Sbjct: 381 YLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMI 423



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 128/267 (47%), Gaps = 7/267 (2%)

Query: 175 LRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
           LR  K +H + ++T    S+  + ++L   Y K  S+  A ++FDK    +V+SW  +I 
Sbjct: 61  LRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILIS 120

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
              Q    E+ +  F ++  SG  PN FT+  VL+AC    +   G+ V+    + G+  
Sbjct: 121 GCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFS 180

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             +  + ++ +++K  + E++ +VF  +   ++V W ++I+G  +N     AL+ F  + 
Sbjct: 181 NGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMC 240

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVD--KGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
                P+   F  +LTAC     ++  +G+Q +  IK   G          I+DL A+  
Sbjct: 241 CRFFMPNSFTFSSILTACAALEELEFGRGVQGW-VIKCGAGEDVFVG--TAIIDLYAKCR 297

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGG 438
              +A     +MP++ +   W +++ G
Sbjct: 298 DMDQAVKEFLRMPIR-NVVSWTTIISG 323


>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
 gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
          Length = 694

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 258/460 (56%), Gaps = 9/460 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + +++       AL EG+++H  ++       + ++N L+ MY +CG + DA+ +
Sbjct: 212 PTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERV 271

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM------PQRDNFSWTAMISGYVRYN 137
           F  M+ RD+ S+N MIS + + G   +  NLF  M        RD  SW  MI+GYV+  
Sbjct: 272 FSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAG 331

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG--FDSDEV 195
            P  AL +++ M   E    N+ T  S+LS   +   LR G+ IH  ++       SD +
Sbjct: 332 DPFSALSIFKRML-LEGIRGNQVTFMSLLSVCDSRALLRQGETIHRCVIDQTPELSSDPI 390

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +A+ +MYGKCG ++ AR +F+    R++ SW +MI  Y   GR E+ F L   + + G
Sbjct: 391 VAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREG 450

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           + P+  TF  +LNAC    A   GK +H  +   G +  +  A+ALV+ YSKCGN++ + 
Sbjct: 451 VLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTAT 510

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            +F  +   D+VSW  +IAG+A NG   +AL+   L+ + G +PD I F+ +L+A +HAG
Sbjct: 511 SLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAG 570

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            + +G   F S+   H L    +HY C++DLL R+GR  EAE  +S M  +  +  W +L
Sbjct: 571 FLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGEAEYFVSAMRDEDKEVSWMTL 630

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           L  C +HG+ + AKR A ++ E+ P++ + YV ++N+YA+
Sbjct: 631 LSACEVHGDEERAKRVAGSIVEMNPQHSSAYVALSNLYAT 670



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 195/456 (42%), Gaps = 76/456 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + S +  C  +R+L  G+ +H+ +   G +  V +   L+ MY +CG +  A+ +
Sbjct: 110 PDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREI 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M ER+V S+N M++  T      +A  LF  M         AM+       +P    
Sbjct: 170 FHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVA------VAMV-------EP---- 212

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                          + +  +VL+AV+  + L  G+ IH  I      S   V +AL  M
Sbjct: 213 --------------TRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVTM 258

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG------------RREEGFA----- 246
           YG+CG + +A ++F  M  RD+VSW AMI  Y Q G            R E   A     
Sbjct: 259 YGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVI 318

Query: 247 --------------------LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
                               +F  ++  GIR N  TF  +L+ C   A    G+ +H  +
Sbjct: 319 SWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRALLRQGETIHRCV 378

Query: 287 T----RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
                 +  DP    A+A+V+MY KCG ++ ++ +F      +L SW S+I+ YA +G  
Sbjct: 379 IDQTPELSSDP--IVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRA 436

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           ++A +  E + + G  PD + F+ +L AC   G V +G +  H+     GL         
Sbjct: 437 EQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQG-KMIHARIIDSGLEKDTVVANA 495

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +V+  ++ G    A  +   +  + D   W  ++ G
Sbjct: 496 LVNFYSKCGNLDTATSLFGALDYR-DVVSWNGIIAG 530



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 212/491 (43%), Gaps = 78/491 (15%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKS-SGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+   + +L++ C     LE+GK++H+ + +    +  V ++N ++ MY KC        
Sbjct: 8   PNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKC-------- 59

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                 ER                  + A  +F EM +RD  SW   I+           
Sbjct: 60  ------ER-----------------ADLAMAVFSEMRERDLISWNNAIAANAESGDYTFT 96

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L L + MQ  E    +K T  S L+A    + L  G+ IH  ++  G + D V+ +AL  
Sbjct: 97  LALLKSMQ-LEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVT 155

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAF 261
           MYG+CG +  AR+IF +M +R+VVSW AM+          E   LF  ++    + P   
Sbjct: 156 MYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRV 215

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           +F  VLNA     A   G+++H  +           A+ALV MY +CG V ++++VF+ M
Sbjct: 216 SFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAM 275

Query: 322 PRPDLVSWTSLIAGYAQNGM-------------------------------------PDK 344
            R DLVSW ++I+ YAQ+G+                                     P  
Sbjct: 276 ERRDLVSWNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFS 335

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS--IKEKHGLTYTADHYAC 402
           AL  F+ +L  G + + + F+ +L+ C    L+ +G +  H   I +   L+      A 
Sbjct: 336 ALSIFKRMLLEGIRGNQVTFMSLLSVCDSRALLRQG-ETIHRCVIDQTPELSSDPIVAAA 394

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEP 460
           IV++  + G    A  +      + +   W S++    +HG  + A   +E +    + P
Sbjct: 395 IVNMYGKCGELDTARHLFEDTSHR-NLASWNSMISAYALHGRAEQAFDLSERMRREGVLP 453

Query: 461 ENPATYVTMAN 471
           +   T++T+ N
Sbjct: 454 DR-VTFITLLN 463



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF-AASALVHMYSKCGNVE 312
           S + PN  TF  +L AC      E GKQ+H  ++ +         A+A++ MY KC   +
Sbjct: 4   SSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERAD 63

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            +  VF+ M   DL+SW + IA  A++G     L   + +   G  PD + FV  L AC 
Sbjct: 64  LAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACI 123

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
            +  +  G +  H++  + G+         +V +  R G    A ++  +MP + +   W
Sbjct: 124 GSRSLSNG-RLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPER-NVVSW 181

Query: 433 ASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYVTMAN 471
            +++  C ++ +    ++L KR   A+  +EP    +++T+ N
Sbjct: 182 NAMVASCTLNAHFAEAIELFKRMV-AVAMVEP-TRVSFITVLN 222


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 264/476 (55%), Gaps = 63/476 (13%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           +Q C + ++     ++HS +  +GF     +SN LLD+Y KCG I  A  LFDEM     
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEM----- 64

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                                     P RD+ SW ++++ + +   P   L +   M   
Sbjct: 65  --------------------------PNRDHVSWASILTAHNKALIPRRTLSMLNTMFTH 98

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           +    + F  + ++ A S++  LRLGK++H   M + F  DEVV S+L DMY KCG  ++
Sbjct: 99  DGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDD 158

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG---------------------------- 244
           AR +FD ++ ++ VSWT+MI  Y + GR+ E                             
Sbjct: 159 ARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHG 218

Query: 245 ---FALFSELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
              F+LF+E+ + GI   +    + V+  CA+ A  ELGKQ+HG +  +G++   F ++A
Sbjct: 219 IYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNA 278

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY+KC ++  +K +F  MPR D++SWTS+I G AQ+G  ++AL  ++ ++ S  +P+
Sbjct: 279 LVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPN 338

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            + FVG+L AC+HAGLV +G + F S+   + +  +  HY C++DLL+RSG   EAE+++
Sbjct: 339 EVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLL 398

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            K+P KPD+  WASLL  C  H NL++  R A+ + +++PE+P+TY+ ++N+YA A
Sbjct: 399 DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGA 454



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 210/412 (50%), Gaps = 12/412 (2%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H    P   +++ +++ C     L  GK+VH+    S F     + + L+DMY KCG   
Sbjct: 98  HDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPD 157

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           DA+ +FD +  ++  S+ +MISG+ + G   +A +LF + P R+ FSWTA+ISG ++   
Sbjct: 158 DARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGH 217

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
            I +  L+  M+     + +   LSSV+   + +  L LGK+IHG ++  GF+S   + +
Sbjct: 218 GIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISN 277

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL DMY KC  I  A+ IF +M  +DV+SWT++I    Q G+ EE   L+ E++ S I+P
Sbjct: 278 ALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKP 337

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKV 317
           N  TF G+L AC+       G+++   MT     +P     + L+ + S+ G+++ ++ +
Sbjct: 338 NEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENL 397

Query: 318 FNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFE--LLLKSGTQPDHIVFVGVLTACTHA 374
            + +P +PD  +W SL++   ++   +  +   +  L LK      +I+   V       
Sbjct: 398 LDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMW 457

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           G V K  +   S++ +    Y++      +D    S  FH  E      PMK
Sbjct: 458 GSVSKVRKLMSSMEVRKEPGYSS------IDFGKDSQVFHAGESC--DHPMK 501



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 42/216 (19%)

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N   F   L  CA   +     ++H  + + G+D  S  ++ L+ +Y KCG +  + ++F
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLV 377
           + MP  D VSW S++  + +  +P + L     +    G QPDH VF  ++ AC+  G +
Sbjct: 62  DEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYL 121

Query: 378 DKGLQ-----------------------------------YFHSIKEKHGLTYTADHYAC 402
             G Q                                    F SI  K+ +++T+     
Sbjct: 122 RLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTS----- 176

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           ++   ARSGR  EA D+  + P++ + F W +L+ G
Sbjct: 177 MISGYARSGRKCEAMDLFLQAPVR-NLFSWTALISG 211


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 255/444 (57%), Gaps = 34/444 (7%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           ++ C  + AL  G+++H+     GF    F++N L  MY KC                  
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC------------------ 265

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                        G LE    LF++M  RD  SWT +I+  V+  Q   A+  +  M+  
Sbjct: 266 -------------GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMR-- 310

Query: 153 ENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
           E+ VS N++T ++V+S  + +  +  G+++H  I+  G  +   V +++  MY KCG + 
Sbjct: 311 ESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLT 370

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            +  IF +M  RD+VSW+ +I  Y Q G   E F L S +   G +P  F  A VL+AC 
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           + A  E GKQ+H Y+  IG +  +   SAL++MY KCG++E + ++F+     D+VSWT+
Sbjct: 431 NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTA 490

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I GYA++G   + ++ FE + + G +PD + F+GVL+AC+HAGLVD G  YF+++ +K+
Sbjct: 491 MINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKY 550

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            ++ + +HY C++DLL R+GR  +AE +I  MP   D  +W++LL  CR+HG+++  +R 
Sbjct: 551 QISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRT 610

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           AE + ++EP    T++T+ANIYAS
Sbjct: 611 AERILQLEPNCAGTHITLANIYAS 634



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 210/441 (47%), Gaps = 43/441 (9%)

Query: 4   ILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           +L    R++  L+I        P I S   + C  N  +  G+ +H +   +G    VF+
Sbjct: 101 LLFKNMRVESGLRI-------DPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFV 153

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            + LLDMY                               TK G + + R +F EMP R+ 
Sbjct: 154 GSALLDMY-------------------------------TKNGKIFEGRRVFHEMPMRNV 182

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIH 182
            SWTA+I+G VR     EAL  +  M  + + V  + +T +  L A +    L  G+EIH
Sbjct: 183 VSWTAIITGLVRAGYNKEALVYFSEM--WRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
              M+ GFD    V + L+ MY KCG +     +F+KM  RDVVSWT +I    Q G+ E
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F  + +S + PN +TFA V++ CA+ A  E G+Q+H  +  +G        ++++
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY+KCG + +S  +F+ M R D+VSW+++IAGY Q G   +A E    +   G +P   
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               VL+AC +  +++ G Q  H+     GL +TA   + ++++  + G   EA  +   
Sbjct: 421 ALASVLSACGNMAILEHGKQ-LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDA 479

Query: 423 MPMKPDKFLWASLLGGCRIHG 443
                D   W +++ G   HG
Sbjct: 480 AE-NDDIVSWTAMINGYAEHG 499



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 194/377 (51%), Gaps = 5/377 (1%)

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           + + D+   N  +    K G L  AR +FD+M Q+D  SWT +ISGYV  N   EAL L+
Sbjct: 44  ISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF 103

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           + M+       + F LS    A      +  G+ +HGY ++TG  +   V SAL DMY K
Sbjct: 104 KNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTK 163

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G I E R++F +M  R+VVSWTA+I    + G  +E    FSE+ +S +  +++TFA  
Sbjct: 164 NGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIA 223

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L ACAD  A   G+++H    + G+D  SF A+ L  MY+KCG +E    +F  M   D+
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDV 283

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSWT++I    Q G  + A++ F  + +S   P+   F  V++ C +   ++ G Q  H+
Sbjct: 284 VSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ-LHA 342

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +    GL  +      I+ + A+ G+   +  +  +M  + D   W++++ G    G++ 
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT-RRDIVSWSTIIAGYXQGGHV- 400

Query: 447 LAKRAAEALFEIEPENP 463
               A E L  +  E P
Sbjct: 401 --SEAFELLSWMRMEGP 415



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 169/334 (50%), Gaps = 36/334 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++++I  C     +E G+++H+ +   G    + + N ++ MYAKCG ++ +  +
Sbjct: 316 PNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVI 375

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F EM  RD+ S++T+I+G+ +GG + +A  L          SW  M              
Sbjct: 376 FHEMTRRDIVSWSTIIAGYXQGGHVSEAFEL---------LSWMRM-------------- 412

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                    E     +F L+SVLSA   +  L  GK++H Y++  G +   +V SAL +M
Sbjct: 413 ---------EGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINM 463

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGSI EA +IFD   + D+VSWTAMI  Y + G   E   LF ++ + G+RP++ TF
Sbjct: 464 YCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTF 523

Query: 264 AGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            GVL+AC+     +LG      M+ +    P       ++ +  + G + +++ +   MP
Sbjct: 524 IGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMP 583

Query: 323 --RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
             R D+V W++L+     +G  ++     E +L+
Sbjct: 584 FHRDDVV-WSTLLRACRVHGDVERGRRTAERILQ 616



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 109/224 (48%), Gaps = 21/224 (9%)

Query: 11  LKEALQILH--QISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           + EA ++L   ++  P P+ ++  S++  C     LE GK++H+++ S G +    + + 
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRD 122
           L++MY KCG+I +A  +FD  +  D+ S+  MI+G+ + G   +  +LF+++P    + D
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-----RL 177
           + ++  ++S             L  +  ++ N++S K+ +S        +  L     RL
Sbjct: 520 SVTFIGVLSA-------CSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
               H  I    F  D+VVWS L       G +   R+  ++++
Sbjct: 573 SDAEH-MIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERIL 615


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 174/485 (35%), Positives = 262/485 (54%), Gaps = 72/485 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S +  C     +  G ++HS +  S     V+I + L+DMY+KCGN++DA        
Sbjct: 155 FASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDA-------- 206

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  + +FDEM  R+  SW ++I+ Y +    +EAL ++++
Sbjct: 207 -----------------------QQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQV 243

Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGK 206
           M   E+ V  ++ TL+SV+SA +++  +++G+E+H  +++     +D ++ +A  DMY K
Sbjct: 244 M--LESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAK 301

Query: 207 CGSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRY 235
           C  I EAR IFD                               KM +R+VVSW A+I  Y
Sbjct: 302 CSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGY 361

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G  EE  +LF  L +  + P  +TFA +L ACAD A   LG Q H ++ + G+   S
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQS 421

Query: 296 ------FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                 F  ++L+ MY KCG VE    VF  M   D VSW ++I G+AQNG  ++ALE F
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +L SG +PDHI  +GVL+AC HAG V++G  YF S+    G+    DHY C+VDLL R
Sbjct: 482 REMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGR 541

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G   EA+ +I +MP++PD  +W SLL  C++H N+ L K  AE LFE+E  N   YV +
Sbjct: 542 AGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLL 601

Query: 470 ANIYA 474
           +N+YA
Sbjct: 602 SNMYA 606



 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 239/430 (55%), Gaps = 43/430 (10%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           VH+ +  SGF   VFI N L+D YAKCG++ D + LFD+M +R+V ++N++++G TK G 
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L++A +LF  MP+RD  +W +M+SG+ ++++  EAL  + MM   E  V N++T +S LS
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHK-EGFVLNEYTFASGLS 160

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           A S +  +  G +IH  I ++   SD  + SAL DMY KCG++N+A+Q+FD+M DR+VVS
Sbjct: 161 ACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVS 220

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W ++I  Y Q G   E   +F  +++S + P+  T A V++ACA  +A ++G++VH  + 
Sbjct: 221 WNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVV 280

Query: 288 RIGYDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMP------------------------ 322
           ++         S A V MY+KC  ++ ++ +F+ MP                        
Sbjct: 281 KMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAAR 340

Query: 323 -------RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
                    ++VSW +LIAGY QNG  ++AL  F LL +    P H  F  +L AC    
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLA 400

Query: 376 LVDKGLQ-YFHSIKEKHGLTYTA----DHYA--CIVDLLARSGRFHEAEDVISKMPMKPD 428
            +  G+Q + H +  KHG  + +    D +    ++D+  + G   E   V  KM M+ D
Sbjct: 401 DLHLGMQAHVHVL--KHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERD 457

Query: 429 KFLWASLLGG 438
              W +++ G
Sbjct: 458 CVSWNAMIIG 467



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 189/378 (50%), Gaps = 45/378 (11%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQN---------------------- 39
           +D+      + +A Q+  ++   +   ++SLI    QN                      
Sbjct: 194 VDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDE 253

Query: 40  -------------RALEEGKKVHSH-LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
                         A++ G++VH+  +K    +  + +SN  +DMYAKC  I +A+ +FD
Sbjct: 254 VTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFD 313

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
            M  R+V +  +M+SG+    S + AR +F +M +R+  SW A+I+GY +  +  EAL L
Sbjct: 314 SMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSL 373

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF------DSDEVVWSA 199
           + +++  E+     +T +++L A + +  L LG + H ++++ GF      + D  V ++
Sbjct: 374 FCLLKR-ESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS 432

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY KCG + E   +F KM++RD VSW AMI  + Q G   E   LF E++ SG +P+
Sbjct: 433 LIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPD 492

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVF 318
             T  GVL+AC      E G+     MTR  G  P     + +V +  + G +E +K + 
Sbjct: 493 HITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSII 552

Query: 319 NGMP-RPDLVSWTSLIAG 335
             MP +PD V W SL+A 
Sbjct: 553 EEMPVQPDSVIWGSLLAA 570


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 176/471 (37%), Positives = 259/471 (54%), Gaps = 70/471 (14%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           + EG+KVH+ +  +G +   ++ N  +DMYA+ G                      ++ G
Sbjct: 124 VREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELG----------------------LVEG 161

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           FT+         +F+EMP RD  SW  MISGYVR  +  EA+D+YR M    N   N+ T
Sbjct: 162 FTQ---------VFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEAT 212

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           + S LSA + ++ L LGKEIH YI  +  D   ++ +AL DMY KCG ++ AR+IFD M 
Sbjct: 213 VVSTLSACAVLRNLELGKEIHDYIA-SELDLTTIMGNALLDMYCKCGHVSVAREIFDAMT 271

Query: 222 -------------------------------DRDVVSWTAMIGRYFQEGRREEGFALFSE 250
                                           RD+V WTAMI  Y Q  R EE  ALF E
Sbjct: 272 VKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGE 331

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYSFAASALVHMYSKC 308
           +   G++P+ F    +L  CA   A E GK +H Y+   RI  D  +   +AL+ MY+KC
Sbjct: 332 MQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVD--AVVGTALIEMYAKC 389

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G +E S ++FNG+   D  SWTS+I G A NG P +ALE F+ +   G +PD I FV VL
Sbjct: 390 GCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVL 449

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+HAGLV++G + FHS+   + +    +HY C +DLL R+G   EAE+++ K+P + +
Sbjct: 450 SACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNN 509

Query: 429 KF---LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +    L+ +LL  CR +GN+D+ +R A AL +++  + + +  +A+IYASA
Sbjct: 510 EIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASA 560



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 147/323 (45%), Gaps = 15/323 (4%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS--DMYGKCGSINEARQ 215
           +K    + +S + + + +   K+I  +I   G   D    + L    M    G  N A +
Sbjct: 4   SKLMKGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANR 63

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           IF+ + D  +  +  MI  + + G      +LF +L + G+ P+ +T+  VL        
Sbjct: 64  IFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGE 123

Query: 276 EELGKQVHGYMTRIG--YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
              G++VH ++ + G  +DPY    ++ + MY++ G VE   +VF  MP  D VSW  +I
Sbjct: 124 VREGEKVHAFVVKTGLEFDPY--VCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMI 181

Query: 334 AGYAQNGMPDKALE-YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           +GY +    ++A++ Y  +  +S  +P+    V  L+AC     ++ G +    I  +  
Sbjct: 182 SGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELD 241

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           LT    +   ++D+  + G    A ++   M +K +   W S++ G  I G LD A+   
Sbjct: 242 LTTIMGN--ALLDMYCKCGHVSVAREIFDAMTVK-NVNCWTSMVTGYVICGQLDQARN-- 296

Query: 453 EALFEIEP-ENPATYVTMANIYA 474
             LFE  P  +   +  M N Y 
Sbjct: 297 --LFERSPSRDIVLWTAMINGYV 317


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 262/457 (57%), Gaps = 5/457 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+++ C + R L  G+ VH H   +G    +F  N L+ MYAKCG+++ A+ +
Sbjct: 171 PDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKV 230

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLF----DEMPQRDNFSWTAMISGYVRYNQP 139
           FD M +RDV S+N+MIS +   G   +A  LF    DE  + ++ +W  +  GY++    
Sbjct: 231 FDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDY 290

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             A+ L R M      V +  TL   L+A S +  LRLGKEIHG  +R   D  E V +A
Sbjct: 291 RAAVGLIREMVRGGAEV-DYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNA 349

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY +C  +  AR +F  +    VV+W  M+  +      EE  ++F E+I  G++PN
Sbjct: 350 LITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPN 409

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T    L  CA  A  + G+++HG++ + G+  Y    ++L+ MYSK G +  ++ VF+
Sbjct: 410 YVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFD 469

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D++S+TS+IAGY   G    AL  FE ++ SG +PDHI+ V VL+AC+H+GLV +
Sbjct: 470 TMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLE 529

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G + F+ +   +G+    +HY+C++DL AR+G   +AE+++   P  P   +WA+L+G C
Sbjct: 530 GEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGAC 589

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              GN+++ +RAA  L E+  EN   YV +AN+YA+A
Sbjct: 590 HDRGNIEIGERAARKLLEMRTENAGHYVLIANMYAAA 626



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 5/192 (2%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI--NEARQIFDKMVDRDVVSWTAMI 232
           LRLG ++H   +  G     ++   L  +Y    S+  + A    D  +    + +  +I
Sbjct: 89  LRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTLP---LPYNVLI 145

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
               + G   +  A + E+ K+G+ P+ FT+  VL ACA+     LG+ VH +    G D
Sbjct: 146 SSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMD 205

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              F  +AL+ MY+KCG++ +++KVF+GM + D+VSW S+I+ YA  G   +A+E F  +
Sbjct: 206 GNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRM 265

Query: 353 LKSGTQPDHIVF 364
              GT+ + + +
Sbjct: 266 RDEGTEVNSVTW 277


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 157/452 (34%), Positives = 250/452 (55%), Gaps = 44/452 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN--ISDAQTLFDE 86
           Y  L++ C     L   K +H+H++  G    +++ N L+D Y++CG   + DA  LF++
Sbjct: 120 YPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEK 179

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M ERD  S+N+M+ G  K G L  AR LFDEMPQRD  SW  M+ GY R  +  +A +L+
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELF 239

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M    N+VS                                       WS +   Y K
Sbjct: 240 EKMPE-RNTVS---------------------------------------WSTMVMGYSK 259

Query: 207 CGSINEARQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            G +  AR +FDKM    ++VV+WT +I  Y ++G  +E   L  +++ SG++ +A    
Sbjct: 260 AGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVI 319

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            +L AC +     LG ++H  + R      ++  +AL+ MY+KCGN++ +  VFN +P+ 
Sbjct: 320 SILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK 379

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           DLVSW +++ G   +G   +A+E F  + + G +PD + F+ VL +C HAGL+D+G+ YF
Sbjct: 380 DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYF 439

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           +S+++ + L    +HY C+VDLL R GR  EA  V+  MPM+P+  +W +LLG CR+H  
Sbjct: 440 YSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNE 499

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +D+AK   + L +++P +P  Y  ++NIYA+A
Sbjct: 500 VDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAA 531



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 204/424 (48%), Gaps = 46/424 (10%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S  I+   +Q   +   L + K++H+ +        + I+  L+   + C   + A  +F
Sbjct: 15  SRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVF 74

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           +++QE +V   N++I                                 + + +QP +A  
Sbjct: 75  NQVQEPNVHLCNSLI-------------------------------RAHAQNSQPYQAFF 103

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           ++  MQ F    ++ FT   +L A S    L + K +H +I + G  SD  V +AL D Y
Sbjct: 104 VFSEMQRF-GLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCY 162

Query: 205 GKCG--SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            +CG   + +A ++F+KM +RD VSW +M+G   + G   +   LF E+ +  +     +
Sbjct: 163 SRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL----IS 218

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           +  +L+  A     E+ K    +      +  S+  S +V  YSK G++E ++ +F+ MP
Sbjct: 219 WNTMLDGYA--RCREMSKAFELFEKMPERNTVSW--STMVMGYSKAGDMEMARVMFDKMP 274

Query: 323 RP--DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
            P  ++V+WT +IAGYA+ G+  +A    + ++ SG + D    + +L ACT +GL+  G
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLG 334

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           ++  HSI ++  L   A     ++D+ A+ G   +A DV + +P K D   W ++L G  
Sbjct: 335 MR-IHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLG 392

Query: 441 IHGN 444
           +HG+
Sbjct: 393 VHGH 396



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 12/280 (4%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K++H  I+R     D  +   L      C   N A ++F+++ + +V    ++I  + Q 
Sbjct: 36  KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQN 95

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            +  + F +FSE+ + G+  + FT+  +L AC+  +   + K +H ++ ++G     +  
Sbjct: 96  SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVP 155

Query: 299 SALVHMYSKCG--NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
           +AL+  YS+CG   V ++ K+F  M   D VSW S++ G  + G    A   F+ +    
Sbjct: 156 NALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEM---- 211

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            Q D I +  +L        + K  + F  + E++ ++++      +V   +++G    A
Sbjct: 212 PQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWST-----MVMGYSKAGDMEMA 266

Query: 417 EDVISKMPMKPDKFL-WASLLGGCRIHGNLDLAKRAAEAL 455
             +  KMP+     + W  ++ G    G L  A R  + +
Sbjct: 267 RVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQM 306


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 174/485 (35%), Positives = 265/485 (54%), Gaps = 72/485 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S +  C   + L+ G ++HS +  S +   V++ + L+DMY+KCG +           
Sbjct: 154 FGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRV----------- 202

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EALDLYR 147
                               E A+++FDEM  R   SW ++I+ Y + N P+ EAL ++ 
Sbjct: 203 --------------------EYAQSVFDEMTVRSRVSWNSLITCYEQ-NGPVDEALKIFV 241

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGK 206
            M        ++ TL+SV+SA + I  ++ G++IH  +++   F +D ++ +AL DMY K
Sbjct: 242 EMIKC-GVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAK 300

Query: 207 CGSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRY 235
           C  INEAR IFD                                M+ +DV++W A+I   
Sbjct: 301 CNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGC 360

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY---- 291
            Q G  EE   LF  L +  + P  +TF  +LNACA+ A  +LG+Q H ++ + G+    
Sbjct: 361 TQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQY 420

Query: 292 --DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
             D   F  ++L+ MY KCG+VEN  +VF  M   D VSW ++I GYAQNG  +KALE F
Sbjct: 421 GEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVF 480

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +L+SG  PDH+  +GVL AC+HAGL+D+G  YF S+  +HGL    DHY C+VDLL R
Sbjct: 481 CKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGR 540

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G   EA+++I +M M+PD  +W SLL  C++H N+ L +   + L E++PEN   YV +
Sbjct: 541 AGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLL 600

Query: 470 ANIYA 474
           +N+YA
Sbjct: 601 SNMYA 605



 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 152/485 (31%), Positives = 249/485 (51%), Gaps = 45/485 (9%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S +S L+  C ++R+  +  +VH+ +  S F    FI N L+D+Y KCG +  A+ LFD 
Sbjct: 20  SPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDR 79

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M ER++ S+N++I  FTK G L+ A ++F++MPQ D  SW +MISG+ ++ +  EAL  +
Sbjct: 80  MLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYF 139

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M      + N+++  S LSA + +Q L+LG +IH  + R+ + SD  + SAL DMY K
Sbjct: 140 AQMHG-HGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSK 198

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG +  A+ +FD+M  R  VSW ++I  Y Q G  +E   +F E+IK G+ P+  T A V
Sbjct: 199 CGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASV 258

Query: 267 LNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFNGMP--- 322
           ++ACA  +A + G+Q+H  + +   +       +AL+ MY+KC  +  ++ +F+ MP   
Sbjct: 259 VSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRS 318

Query: 323 ----------------------------RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
                                         D+++W +LIAG  QNG  ++AL  F LL +
Sbjct: 319 VVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKR 378

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYA--CIVDLLA 408
               P H  F  +L AC +   +  G Q  HS   KHG  +     +D +    ++D+  
Sbjct: 379 ESVWPTHYTFGNLLNACANLADLQLGRQA-HSHVLKHGFRFQYGEDSDVFVGNSLIDMYM 437

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE-IEPENPATYV 467
           + G       V   M ++ D   W +++ G   +G      +A E   + +E      +V
Sbjct: 438 KCGSVENGCRVFQHM-LEKDCVSWNAMIVGYAQNG---FGNKALEVFCKMLESGEAPDHV 493

Query: 468 TMANI 472
           TM  +
Sbjct: 494 TMIGV 498



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 192/378 (50%), Gaps = 45/378 (11%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALE------------------ 43
           +D+     R++ A  +  +++  S   ++SLI    QN  ++                  
Sbjct: 193 VDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252

Query: 44  -----------------EGKKVHSH-LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
                            EG+++H+  +K   F+  + + N LLDMYAKC  I++A+ +FD
Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFD 312

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
            M  R V S  +M+SG+ K   ++ AR +F  M  +D  +W A+I+G  +  +  EAL L
Sbjct: 313 MMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALIL 372

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF------DSDEVVWSA 199
           +R+++  E+     +T  ++L+A + +  L+LG++ H ++++ GF      DSD  V ++
Sbjct: 373 FRLLKR-ESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNS 431

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY KCGS+    ++F  M+++D VSW AMI  Y Q G   +   +F ++++SG  P+
Sbjct: 432 LIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPD 491

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
             T  GVL AC+     + G+     MT + G  P     + +V +  + G +E +K + 
Sbjct: 492 HVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLI 551

Query: 319 NGMP-RPDLVSWTSLIAG 335
             M  +PD + W SL+A 
Sbjct: 552 EEMSMQPDAIVWGSLLAA 569


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 263/470 (55%), Gaps = 34/470 (7%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +  LK    +L +   PS   Y +++  C    ALE+GK++H+H+  S +   V +S  L
Sbjct: 212 EESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTAL 271

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
             MY KCG   DA                               R +F+ +  RD  +W 
Sbjct: 272 TKMYMKCGAFKDA-------------------------------REVFECLSYRDVIAWN 300

Query: 128 AMISGYVRYNQPIEAL-DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            MI G+V   Q  EA    +RM++  E    ++ T ++VLSA +    L  GKEIH    
Sbjct: 301 TMIRGFVDSGQLEEAHGTFHRMLE--EGVAPDRATYTTVLSACARPGGLARGKEIHARAA 358

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G  SD    +AL +MY K GS+ +ARQ+FD+M  RDVVSWT ++GRY    +  E F 
Sbjct: 359 KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFT 418

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
            F ++++ G++ N  T+  VL AC++  A + GK++H  + + G        +AL+ MY 
Sbjct: 419 TFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYF 478

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG+VE++ +VF GM   D+V+W +LI G  QNG   +AL+ +E++   G +P+   FV 
Sbjct: 479 KCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVN 538

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC    LV++G + F  + + +G+  T  HYAC+VD+LAR+G   EAEDVI  +P+K
Sbjct: 539 VLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLK 598

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P   +W +LL  CRIH N+++ +RAAE   ++EP+N   YV+++ IYA+A
Sbjct: 599 PSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAA 648



 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/429 (33%), Positives = 220/429 (51%), Gaps = 41/429 (9%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           + LQ LH+     P +    Y  L+Q C + + L  GK+VH H+   G KP V+I+N LL
Sbjct: 14  DVLQYLHR---KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLL 70

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            +YA CG                               S+ +AR LFD+   +   SW  
Sbjct: 71  KLYAHCG-------------------------------SVNEARQLFDKFSNKSVVSWNV 99

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MISGY       EA +L+ +MQ  E    +KFT  S+LSA S+   L  G+EIH  +M  
Sbjct: 100 MISGYAHRGLAQEAFNLFTLMQQ-ERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEA 158

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G  +D  V +AL  MY KCGS+ +AR++FD M  RD VSWT + G Y + G  EE    +
Sbjct: 159 GLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTY 218

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             +++  +RP+  T+  VL+AC   AA E GKQ+H ++    Y      ++AL  MY KC
Sbjct: 219 HAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKC 278

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G  +++++VF  +   D+++W ++I G+  +G  ++A   F  +L+ G  PD   +  VL
Sbjct: 279 GAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVL 338

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC   G + +G +  H+   K GL         ++++ +++G   +A  V  +MP K D
Sbjct: 339 SACARPGGLARGKE-IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRD 396

Query: 429 KFLWASLLG 437
              W +LLG
Sbjct: 397 VVSWTTLLG 405



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L +GK++H +I+R G   +  + + L  +Y  CGS+NEARQ+FDK  ++ VVSW  MI  
Sbjct: 44  LAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISG 103

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Y   G  +E F LF+ + +  + P+ FTF  +L+AC+  A    G+++H  +   G    
Sbjct: 104 YAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLAND 163

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           +   +AL+ MY+KCG+V ++++VF+ M   D VSWT+L   YA++G  +++L+ +  +L+
Sbjct: 164 TTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQ 223

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGR 412
              +P  I ++ VL+AC     ++KG Q    I E     Y +D      +  +  + G 
Sbjct: 224 ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESE---YHSDVRVSTALTKMYMKCGA 280

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTM 469
           F +A +V   +  + D   W +++ G    G L+ A      + E  + P+  ATY T+
Sbjct: 281 FKDAREVFECLSYR-DVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDR-ATYTTV 337


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 263/455 (57%), Gaps = 34/455 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     S +I  C     L  G+++HS     G      +  CL++MYAKC         
Sbjct: 269 PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC--------- 319

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR---YNQPI 140
                              +  GS+  AR +FD++   + FSWTAMI+GYV+   Y++  
Sbjct: 320 -------------------SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDE-- 358

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           EALDL+R M    + + N FT SS L A + +  LR+G+++  + ++ GF S   V ++L
Sbjct: 359 EALDLFRGMI-LTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MY + G I++AR+ FD + +++++S+  +I  Y +    EE   LF+E+   G+  +A
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           FTFA +L+  A       G+Q+H  + + G        +AL+ MYS+CGN+E++ +VF  
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   +++SWTS+I G+A++G   +ALE F  +L+ G +P+ + ++ VL+AC+H GLV++G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            ++F S+  +HG+    +HYACIVD+L RSG   EA   I+ MP K D  +W + LG CR
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACR 657

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +HGNL+L K AA+ + E EP +PA Y+ ++N+YAS
Sbjct: 658 VHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYAS 692



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/423 (30%), Positives = 207/423 (48%), Gaps = 48/423 (11%)

Query: 7   NQRRLKEALQIL----HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N  RL +A+  L    HQ SHP    YS  ++ C + R+ + G  VH  L  S       
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL----- 97

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM-PQR 121
                                     + D  + N++IS ++K G  E+A ++F  M   R
Sbjct: 98  --------------------------QLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSR 131

Query: 122 DNFSWTAMISGYVRYNQPIEAL-DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           D  SW+AM+S +   N    AL     M++N      N++  ++   A S  + + +G  
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIEN--GYYPNEYCFAAATRACSTAEFVSVGDS 189

Query: 181 IHGYIMRTGF-DSDEVVWSALSDMYGKC-GSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           I G++++TG+  SD  V   L DM+ K  G +  A ++F+KM +R+ V+WT MI R  Q 
Sbjct: 190 IFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G   E   LF ++I SG  P+ FT +GV++ACA+     LG+Q+H    R G        
Sbjct: 250 GYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 299 SALVHMYSKC---GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD-KALEYFELLLK 354
             L++MY+KC   G++  ++K+F+ +   ++ SWT++I GY Q G  D +AL+ F  ++ 
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYF-HSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +   P+H  F   L AC +   +  G Q F H++K   G +        ++ + ARSGR 
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL--GFSSVNCVANSLISMYARSGRI 427

Query: 414 HEA 416
            +A
Sbjct: 428 DDA 430



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 38/250 (15%)

Query: 1   AIDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
            ID        +EAL++ ++I       S   ++SL+        + +G+++H+ +  SG
Sbjct: 448 VIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSG 507

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
            K    + N L+ MY++CGNI  A  +F++M++R+V S+ ++I+GF K G   QA  LF 
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +M +                                E    N+ T  +VLSA S +  + 
Sbjct: 568 KMLE--------------------------------EGVRPNEVTYIAVLSACSHVGLVN 595

Query: 177 LG-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGR 234
            G K         G       ++ + D+ G+ GS++EA Q  + M  + D + W   +G 
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655

Query: 235 YFQEGRREEG 244
               G  E G
Sbjct: 656 CRVHGNLELG 665


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 253/454 (55%), Gaps = 32/454 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    +  +++ C + +AL EG+++H+ +   GF    F+ N L+ MYA CG +     
Sbjct: 121 QPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEV----- 175

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                     E AR +FDEM +R+  +W +M +GY +     E 
Sbjct: 176 --------------------------EVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + L+  M   +    ++ TL SVL+A   +  L LG+ I+ Y+   G   +  + ++L D
Sbjct: 210 VKLFHEMLELDIRF-DEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVD 268

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG ++ AR++FD+M  RDVV+W+AMI  Y Q  R  E   LF E+ K+ I PN  T
Sbjct: 269 MYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT 328

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L++CA   A E GK VH ++ +          +AL+  Y+KCG+VE+S +VF  MP
Sbjct: 329 MVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +++SWT LI G A NG   KALEYF L+L+   +P+ + F+GVL+AC+HAGLVD+G  
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            F S+    G+    +HY C+VD+L R+G   EA   I  MP++P+  +W +LL  C++H
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N+++ + + + L  +EP +   Y+ ++NIYAS 
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASV 542



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 154/311 (49%), Gaps = 16/311 (5%)

Query: 173 QC--LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--GSINEARQIFDKMVDRDVVSW 228
           QC  +R   EIH ++++T       V   L +        S++ A  IF ++ + D  ++
Sbjct: 33  QCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAY 92

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
             MI  +  +    E   LF E+ ++ ++P+ FTF  +L  C+   A   G+Q+H  + +
Sbjct: 93  NIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMK 152

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G+  + F  + L+HMY+ CG VE +++VF+ M   ++ +W S+ AGY ++G  ++ ++ 
Sbjct: 153 CGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKL 212

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  +L+   + D +  V VLTAC     ++ G ++ +   E+ GL         +VD+ A
Sbjct: 213 FHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYVEEKGLKGNPTLITSLVDMYA 271

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGG----CRIHGNLDLAKRAAEALFEIEPENPA 464
           + G+   A  +  +M  + D   W++++ G     R    LDL     +A   I+P    
Sbjct: 272 KCGQVDTARRLFDQMDRR-DVVAWSAMISGYSQASRCREALDLFHEMQKA--NIDPNE-- 326

Query: 465 TYVTMANIYAS 475
             +TM +I +S
Sbjct: 327 --ITMVSILSS 335


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 280/491 (57%), Gaps = 42/491 (8%)

Query: 13  EALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +A Q+  QI    + P+   YS+++  C    A++EGK++H+H+    +     + N LL
Sbjct: 197 QAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALL 256

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM------PQRD 122
            +Y+KCG + +A+ +F+ + +R++ S+   I+GF + G  ++A   F  M      P   
Sbjct: 257 TLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEF 316

Query: 123 NFS------------WTAMISGYVRYN-QPIEALDLYRMMQNFENSVS----NKFTLSSV 165
            FS            W    +   R+  Q + ++ L R M    N  +    N+F L S+
Sbjct: 317 TFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSI 376

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L A   +   R G+ +H  I++  F+SD  + SAL  MY KCG + +A ++FD +   +V
Sbjct: 377 LKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWI--PNV 434

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSW  +I             A FS+++  G  P++ T + +L AC + A    GK++HGY
Sbjct: 435 VSWNTLI-------------AGFSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 481

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
              IG +   +  SALV MY+KCG +  +K +F  MP  + V+W SLI GYA +G  ++A
Sbjct: 482 AMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEA 541

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           +E F  + +S T+ DH+ F  VL AC+HAG+V+ G   F  ++EK+ +    +HYAC+VD
Sbjct: 542 IELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVD 601

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
           LL R+G+  EA D+I  MP++PDKF+W +LLG CR HGN++LA+ AAE LFE+EPE+P +
Sbjct: 602 LLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGS 661

Query: 466 YVTMANIYASA 476
            + ++N+YA A
Sbjct: 662 SLLLSNLYADA 672



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 123/208 (59%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           S LS      C+ LG+  H ++++ G  SDE V ++L DMY KCG ++ A +++DKM   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           D  +   +I  Y + G   + F +F ++   G RPN +T++ +L  C   +A + GKQ+H
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            ++ ++ Y   +   +AL+ +YSKCG +E ++ VF  + + +++SWT+ I G+ Q+G   
Sbjct: 238 AHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFK 297

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTAC 371
           KAL+ F ++ +SG +P+   F  VL +C
Sbjct: 298 KALKQFSMMRESGIEPNEFTFSIVLASC 325



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 197/474 (41%), Gaps = 116/474 (24%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S + FC +   +E G++ H  +   G     F+   L+DMYAKCG +  A  ++D+M   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D  + N +IS + + G   QA  +F ++                                
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNM----------------------------- 208

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
               +  N +T S++L+    I  ++ GK++H ++++  + S+  V +AL  +Y KCG +
Sbjct: 209 ---GTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMM 265

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EA  +F+ +  R+++SWTA I  ++Q G  ++    FS + +SGI PN FTF+ VL +C
Sbjct: 266 EEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325

Query: 271 ADHAAEELGKQVHG---------------YMTRIGYDPYSFAASALV--HMYSKCGNV-- 311
                + + ++                   M   G  P S   +  V   +   CG++  
Sbjct: 326 GCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSD 385

Query: 312 ------------------------------------ENSKKVFNGMPRPDLVSWTSLIAG 335
                                               E + +VF+ +  P++VSW +LIAG
Sbjct: 386 RRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWI--PNVVSWNTLIAG 443

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG--- 392
           ++Q             +L  G  P  +    +L ACT+   +  G       KE HG   
Sbjct: 444 FSQ-------------MLDQGFCPSSVTISSLLPACTNVANLRHG-------KEIHGYAM 483

Query: 393 -LTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +    D Y  + +VD+ A+ G   EA+ +   MP + +   W SL+ G   HG
Sbjct: 484 VIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER-NTVTWNSLIFGYANHG 536



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 13/272 (4%)

Query: 210 INEARQIFDKMVDRDVVSWT----AMIGRYFQEGRREEGFALFSEL----IKSGIRPNAF 261
           +N A  +F+K   R  VS T    +      +EG +E GF   +E        G     +
Sbjct: 56  LNNACILFEKTPKRIGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGFPHRQY 115

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
            F+  L+ C      ELG++ H ++ +IG     F  ++L+ MY+KCG V+++ +V++ M
Sbjct: 116 VFSA-LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKM 174

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D  +   LI+ YA+NG   +A + F  +   GT+P+H  +  +L  C     + +G 
Sbjct: 175 TSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGK 234

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           Q    + +   L+ TA   A ++ L ++ G   EAE V   +  + +   W + + G   
Sbjct: 235 QLHAHVVKMQYLSETAVGNA-LLTLYSKCGMMEEAEIVFENLGQR-NIISWTASINGFYQ 292

Query: 442 HGNLDLAKRAAEALFE--IEPENPATYVTMAN 471
           HG+   A +    + E  IEP      + +A+
Sbjct: 293 HGDFKKALKQFSMMRESGIEPNEFTFSIVLAS 324


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 268/478 (56%), Gaps = 38/478 (7%)

Query: 4   ILCNQRR----LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           +LCN+ R    L E L++ H       S Y +L+  C   R++   K+V +++ +SGF+P
Sbjct: 91  VLCNRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEP 150

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            +++ N +L ++ KCG + DA                               R LFDEMP
Sbjct: 151 DLYVMNRVLFVHVKCGLMLDA-------------------------------RKLFDEMP 179

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYR-MMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           ++D  SW  MI G+V      EA  L+  M + F +  S  FT  +++ A + +  +++G
Sbjct: 180 EKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFT--TMIRASAGLGLVQVG 237

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++IH   ++ G   D  V  AL DMY KCGSI +A  +FD+M ++  V W ++I  Y   
Sbjct: 238 RQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALH 297

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  EE  + + E+  SG + + FT + V+  CA  A+ E  KQ H  + R GYD    A 
Sbjct: 298 GYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVAN 357

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +ALV  YSK G +E++  VFN M R +++SW +LIAGY  +G  ++A+E FE +L+ G  
Sbjct: 358 TALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMI 417

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+H+ F+ VL+AC+++GL ++G + F+S+   H +   A HYAC+V+LL R G   EA +
Sbjct: 418 PNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYE 477

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +I   P KP   +WA+LL  CR+H NL+L K AAE L+ +EPE    Y+ + N+Y S+
Sbjct: 478 LIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSS 535


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 163/433 (37%), Positives = 258/433 (59%), Gaps = 32/433 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  GK+VHS+   SG    + + + L  MY+KCG                          
Sbjct: 288 LNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCG-------------------------- 321

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
                SLE++ +LF E+P +DN  W +MISG+  Y    EA+ L+  M + E +  ++ T
Sbjct: 322 -----SLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLD-EGTSPDEST 375

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L++VL+  S++  L   KEIHGY +R G D    + SAL + Y KCGS+  AR+++D++ 
Sbjct: 376 LAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLP 435

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
           + D VS +++I  Y Q G  ++GF LF +++ SG   +++  + +L A       ELG Q
Sbjct: 436 EMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGAQ 495

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH Y+T+IG        S+L+ MYSK G++E+  K F+ +  PDL++WT+LIA YAQ+G 
Sbjct: 496 VHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGK 555

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            ++AL+ + L+ + G +PD + FVGVL+AC+H GLV++G  + +S+ + +G+     HY 
Sbjct: 556 ANEALQVYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYV 615

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C+VD L RSGR  EAE+ I+  P+KPD  +W +LL  C+I+G+++L K AA+   E+EP 
Sbjct: 616 CMVDALGRSGRLREAENFINTRPIKPDALVWGTLLAACKIYGDVELGKLAAKKAIELEPS 675

Query: 462 NPATYVTMANIYA 474
           +   YV+++NI A
Sbjct: 676 DAGAYVSLSNILA 688



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 202/439 (46%), Gaps = 59/439 (13%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++ +    P    YSS++  C     L  GK V + +   G +  VF+   ++D+YAKCG
Sbjct: 63  EMCNGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAED-VFVCTSIVDLYAKCG 121

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           +++                               +AR +F  +      SWT M+SGY +
Sbjct: 122 HMA-------------------------------EAREVFSRISNPSVVSWTVMLSGYTK 150

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            N    AL+++R M++    + N  T++SV+SA      +    ++H ++ ++GF  D  
Sbjct: 151 SNDAFSALEIFREMRHSGVEI-NSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTS 209

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           V +AL  M  K G IN + ++F+ + D   +++V+   M+  + Q  +  +   LF+ ++
Sbjct: 210 VAAALISMNSKSGDINLSERVFEDLDDIRRQNIVN--VMVTSFSQNKKPGKAIRLFTRML 267

Query: 253 KSGIRPNAFTFAGVLNA--CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + G+ P+ F+   +L+   C +     LGKQVH Y  + G        S+L  MYSKCG+
Sbjct: 268 QEGLNPDEFSVCSLLSVLDCLN-----LGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGS 322

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +E S  +F  +P  D   W S+I+G+ + G   +A+  F  +L  GT PD      VLT 
Sbjct: 323 LEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTV 382

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTAD------HYACIVDLLARSGRFHEAEDVISKMP 424
           C+        L      KE HG T  A         + +V+  ++ G    A  V  ++P
Sbjct: 383 CS-------SLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLP 435

Query: 425 MKPDKFLWASLLGGCRIHG 443
            + D    +SL+ G   HG
Sbjct: 436 -EMDPVSCSSLISGYSQHG 453



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 185/367 (50%), Gaps = 22/367 (5%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN-FEN 154
           +++I  F+K    E A  +F +    + + W  +I+G +R        DL+  M N F+ 
Sbjct: 11  SSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQK 70

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
              + +T SSVL+A ++++ LR GK +   +++ G + D  V +++ D+Y KCG + EAR
Sbjct: 71  P--DSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAR 127

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++F ++ +  VVSWT M+  Y +         +F E+  SG+  N+ T   V++AC   +
Sbjct: 128 EVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPS 187

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF---NGMPRPDLVSWTS 331
                 QVH ++ + G+   +  A+AL+ M SK G++  S++VF   + + R ++V+   
Sbjct: 188 MVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVN--V 245

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA--CTHAGLVDKGLQYFHSIKE 389
           ++  ++QN  P KA+  F  +L+ G  PD      +L+   C + G      +  HS   
Sbjct: 246 MVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNLG------KQVHSYTL 299

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           K GL       + +  + ++ G   E+  +  ++P K D   WAS++ G   +G L    
Sbjct: 300 KSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFK-DNACWASMISGFNEYGYL---- 354

Query: 450 RAAEALF 456
           R A  LF
Sbjct: 355 REAIGLF 361



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 165/331 (49%), Gaps = 38/331 (11%)

Query: 11  LKEAL----QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L+EA+    ++L + + P  S  ++++  C    +L   K++H +   +G   G+ + + 
Sbjct: 354 LREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSA 413

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L++ Y+KCG++  A+ ++D + E D  S +++ISG+++ G ++    LF +M        
Sbjct: 414 LVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDM-------- 465

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             ++SG+        ++D Y               +SS+L A    +   LG ++H YI 
Sbjct: 466 --VMSGF--------SMDSY--------------AISSILKAAVLSEESELGAQVHAYIT 501

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G  ++  V S+L  MY K GSI +  + F ++   D+++WTA+I  Y Q G+  E   
Sbjct: 502 KIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQ 561

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGK-QVHGYMTRIGYDPYSFAASALVHMY 305
           ++  + + G +P+  TF GVL+AC+     E G   ++  +   G +P +     +V   
Sbjct: 562 VYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDAL 621

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            + G +  ++   N  P +PD + W +L+A 
Sbjct: 622 GRSGRLREAENFINTRPIKPDALVWGTLLAA 652



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 2/230 (0%)

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
           EVV S+L D + K     +A ++F   +  +V  W  +I    +       F LF E+  
Sbjct: 7   EVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCN 66

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
              +P+++T++ VL ACA       GK V   + + G +   F  +++V +Y+KCG++  
Sbjct: 67  GFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAEDV-FVCTSIVDLYAKCGHMAE 125

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           +++VF+ +  P +VSWT +++GY ++     ALE F  +  SG + +      V++AC  
Sbjct: 126 AREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGR 185

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
             +V +  Q  H+   K G        A ++ + ++SG  + +E V   +
Sbjct: 186 PSMVCEASQ-VHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDL 234



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 7/152 (4%)

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
           +GY  Y    S+L+  +SK    E++ KVF      ++  W ++IAG  +N       + 
Sbjct: 1   MGYFFYEVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDL 60

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDL 406
           F  +     +PD   +  VL AC       + L++   ++ +       D + C  IVDL
Sbjct: 61  FHEMCNGFQKPDSYTYSSVLAACASL----EELRFGKVVQARVIKCGAEDVFVCTSIVDL 116

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            A+ G   EA +V S++   P    W  +L G
Sbjct: 117 YAKCGHMAEAREVFSRIS-NPSVVSWTVMLSG 147


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 170/461 (36%), Positives = 268/461 (58%), Gaps = 9/461 (1%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVH-SHLKS---SGFKPGVFISNCLLDMYAKCGN 76
           ++H  PS    L+  C +   L  G  +H S +KS   S    GV I N L+ MY +CG 
Sbjct: 43  LNHLDPSF---LLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGK 99

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSL--EQARNLFDEMPQRDNFSWTAMISGYV 134
           + DA  +FDEM  RD  S+N +I GF + G         +F EM +R+  +WTA+ISG  
Sbjct: 100 LPDAVKVFDEMVTRDTISWNALIGGFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLA 159

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +      +L L++ M ++ +   N  T  S+L+A S ++ L+ G +IHG IM+ G  SD 
Sbjct: 160 QNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDL 219

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            + SAL DMY K G I EA +IF+   + D+VS T ++  +   G  EE   +F +++K 
Sbjct: 220 CIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKM 279

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI  +    + VL       +  LG+QVH ++ +  +    F ++ L++MYSKCG ++ S
Sbjct: 280 GIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDES 339

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            KVF+ M   + V+W S+IA +A++G   KAL+ +E +   G +P  + F+ +L AC+HA
Sbjct: 340 MKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHA 399

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLV KG+++  S+ + HG+   ++H+AC+VD+L R+G   EA + I K+P +P   +W +
Sbjct: 400 GLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQA 459

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LLG C ++G+  + K AAE LF   P++P  YV +ANIY+S
Sbjct: 460 LLGACSLYGDSKIGKYAAEHLFSETPDSPVPYVLLANIYSS 500



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 34/230 (14%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C +  ++  L++L        ++ S ++     + +L  G++VHS +    F    F+SN
Sbjct: 265 CEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSN 324

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L++MY+KCG + ++  +FD M+ER+  ++N+MI+ F                       
Sbjct: 325 GLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFA---------------------- 362

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                    R+   ++AL LY  MQ  E +     T  S+L A S    ++ G E    +
Sbjct: 363 ---------RHGDALKALQLYEDMQ-LEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSM 412

Query: 186 MRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD-VVSWTAMIG 233
            +  G +      + + DM G+ G ++EAR   +K+ ++  ++ W A++G
Sbjct: 413 TKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLG 462


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/486 (36%), Positives = 268/486 (55%), Gaps = 74/486 (15%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S +  C   +A   G++VH+ +  S     V+I   L+DMYAKC              
Sbjct: 150 FASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKC-------------- 195

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EALDLY- 146
           ER                  E+A+ +FD MP+R+  SW ++I+ Y   N P+ EAL L+ 
Sbjct: 196 ERP-----------------EEAQKVFDAMPERNIVSWNSLITCY-EQNGPVDEALALFV 237

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYG 205
           RMM+  +  V ++ TL+SV+SA + +   R G+++H  ++++  F  D V+ +AL DMY 
Sbjct: 238 RMMK--DGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYA 295

Query: 206 KCGSINEARQIFDKM-------------------------------VDRDVVSWTAMIGR 234
           KCG   EA+ +FD+M                               V+++VV+W  +I  
Sbjct: 296 KCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIAT 355

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY--- 291
           Y      EE   LF  L +  + P  +T+  VLNACA+ A  +LG+Q H ++ + G+   
Sbjct: 356 YAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFD 415

Query: 292 -DPYS--FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
             P S  F  ++LV MY K G++ +  KVF  M   D VSW ++I GYAQNG    AL  
Sbjct: 416 SGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLL 475

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           FE +L S  +PD +  +GVL+AC H+GLV +G +YF S+ E HG+  T DHY C++DLL 
Sbjct: 476 FERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLG 535

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G   E E++I  MPM+PD  LWASLLG CR+H N+D+ + AA  LFE++P+N   YV 
Sbjct: 536 RAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVL 595

Query: 469 MANIYA 474
           ++N+YA
Sbjct: 596 LSNMYA 601



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 229/481 (47%), Gaps = 51/481 (10%)

Query: 18  LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
           +H +SH   S  + L    R    L   +  H+    S F    F+ N LL  YA+ G++
Sbjct: 9   IHLVSHLRAS--APLADLLRSAPGLRAARAAHARALRSPFAGETFLLNTLLSAYARLGSL 66

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
            DA+ +FD M  R+  SYN ++S   + G  + A  LF  +P  D  S+ A+++   ++ 
Sbjct: 67  HDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHG 126

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           +  +AL     M   ++ V N ++ +S LSA ++ +  R G+++H  + ++   SD  + 
Sbjct: 127 RGGDALRFLAAMHA-DDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIG 185

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           +AL DMY KC    EA+++FD M +R++VSW ++I  Y Q G  +E  ALF  ++K G  
Sbjct: 186 TALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFV 245

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCG------- 309
           P+  T A V++ACA  AA   G+QVH  M +   +       +ALV MY+KCG       
Sbjct: 246 PDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKC 305

Query: 310 ------------------------NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
                                   NV +++ VF  M   ++V+W  LIA YA N   ++A
Sbjct: 306 VFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEA 365

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA--- 401
           L  F  L +    P H  +  VL AC +   +  G Q + H +KE  G  + +   +   
Sbjct: 366 LRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKE--GFRFDSGPESDVF 423

Query: 402 ---CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
               +VD+  ++G   +   V  +M  + D   W +++ G   +G      RA +AL   
Sbjct: 424 VGNSLVDMYLKTGSISDGAKVFERMAAR-DNVSWNAMIVGYAQNG------RAKDALLLF 476

Query: 459 E 459
           E
Sbjct: 477 E 477



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 180/319 (56%), Gaps = 10/319 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P     +S++  C    A  EG++VH+ + KS  F+  + ++N L+DMYAKCG   +A+ 
Sbjct: 246 PDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKC 305

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD M  R V S  +MI+G+ K  ++  A+ +F +M +++  +W  +I+ Y   ++  EA
Sbjct: 306 VFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEA 365

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF------DSDEVV 196
           L L+  ++  E+     +T  +VL+A + +  L+LG++ H ++++ GF      +SD  V
Sbjct: 366 LRLFVRLKR-ESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFV 424

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L DMY K GSI++  ++F++M  RD VSW AMI  Y Q GR ++   LF  ++ S  
Sbjct: 425 GNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNE 484

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSK 315
           RP++ T  GVL+AC      + G++    MT   G  P     + ++ +  + G+++  +
Sbjct: 485 RPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVE 544

Query: 316 KVFNGMP-RPDLVSWTSLI 333
           ++   MP  PD V W SL+
Sbjct: 545 ELIENMPMEPDAVLWASLL 563


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 274/470 (58%), Gaps = 5/470 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A ++ + +       ++ LI    QN   +E   + + + S+G KP        L  
Sbjct: 264 LLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPS 323

Query: 71  YAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
             + G++   + +   +       DV   + +I  + KGG +E AR +F +    D    
Sbjct: 324 ILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVC 383

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMISGYV +   I+A++ +R +   E  V+N  T++SVL A +A+  L+ GKE+H +I+
Sbjct: 384 TAMISGYVLHGLNIDAINTFRWLIQ-EGMVTNSLTMASVLPACAAVAALKPGKELHCHIL 442

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +   ++   V SA++DMY KCG ++ A + F +M DRD V W +MI  + Q G+ E    
Sbjct: 443 KKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAID 502

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++  SG + ++ + +  L+A A+  A   GK++HGY+ R  +   +F AS L+ MYS
Sbjct: 503 LFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYS 562

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCGN+  +  VFN M   + VSW S+IA Y  +G P + L+ +  +L++G  PDH+ F+ 
Sbjct: 563 KCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLV 622

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +++AC HAGLVD+G+ YFH +  ++G+    +HYAC+VDL  R+GR HEA D I  MP  
Sbjct: 623 IISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFT 682

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LLG CR+HGN++LAK A+  L E++P+N   YV ++N++A A
Sbjct: 683 PDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADA 732



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 203/428 (47%), Gaps = 40/428 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +I+ C     +     VH   +S GF   +F  + L+ +YA  G I DA+ +
Sbjct: 110 PDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRV 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FDE+  RD   +N M+ G+ K G  + A   F EM  R ++                   
Sbjct: 170 FDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEM--RTSY------------------- 208

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                      S+ N  T + +LS  +       G ++HG ++ +GF+ D  V + L  M
Sbjct: 209 -----------SMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAM 257

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG++  AR++F+ M   D V+W  +I  Y Q G  +E   LF+ +I +G++P++ TF
Sbjct: 258 YSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTF 317

Query: 264 AGVLNACADHAAEELGKQVHGYMT--RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           A  L +  +  +    K+VH Y+   R+ +D Y    SAL+ +Y K G+VE ++K+F   
Sbjct: 318 ASFLPSILESGSLRHCKEVHSYIVRHRVPFDVY--LKSALIDVYFKGGDVEMARKIFQQN 375

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+   T++I+GY  +G+   A+  F  L++ G   + +    VL AC     +  G 
Sbjct: 376 ILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGK 435

Query: 382 Q-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           + + H +K++  L    +  + I D+ A+ GR   A +   +M  + D   W S++    
Sbjct: 436 ELHCHILKKR--LENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDR-DSVCWNSMISSFS 492

Query: 441 IHGNLDLA 448
            +G  ++A
Sbjct: 493 QNGKPEIA 500



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 190/417 (45%), Gaps = 35/417 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL + C     +++ ++VH+ +   G       S+ +L +Y  CG   DA  LF E++ R
Sbjct: 16  SLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELR 75

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
               +N MI G    G  + A   +                              ++M+ 
Sbjct: 76  YALPWNWMIRGLYMLGWFDFALLFY------------------------------FKMLG 105

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +  N   +K+T   V+ A   +  + L   +H      GF  D    SAL  +Y   G I
Sbjct: 106 S--NVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYI 163

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +AR++FD++  RD + W  M+  Y + G  +     F E+  S    N+ T+  +L+ C
Sbjct: 164 RDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSIC 223

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A       G Q+HG +   G++     A+ LV MYSKCGN+  ++K+FN MP+ D V+W 
Sbjct: 224 ATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWN 283

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            LIAGY QNG  D+A   F  ++ +G +PD + F   L +   +G + +  +  HS   +
Sbjct: 284 GLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSL-RHCKEVHSYIVR 342

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG-NLD 446
           H + +     + ++D+  + G    A  +  +  +  D  +  +++ G  +HG N+D
Sbjct: 343 HRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILV-DVAVCTAMISGYVLHGLNID 398



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 203/421 (48%), Gaps = 46/421 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+ ++  C        G ++H  +  SGF+    ++N L+ MY+KCGN+  A+ LF+ M 
Sbjct: 216 YTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMP 275

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + D  ++N +I+G+ + G  ++A  LF+           AMIS  V+             
Sbjct: 276 QTDTVTWNGLIAGYVQNGFTDEAAPLFN-----------AMISAGVK------------- 311

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    +  T +S L ++     LR  KE+H YI+R     D  + SAL D+Y K G
Sbjct: 312 --------PDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGG 363

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  AR+IF + +  DV   TAMI  Y   G   +    F  LI+ G+  N+ T A VL 
Sbjct: 364 DVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLP 423

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA  AA + GK++H ++ +   +      SA+  MY+KCG ++ + + F  M   D V 
Sbjct: 424 ACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVC 483

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W S+I+ ++QNG P+ A++ F  +  SG + D +     L+A  +       L   +  K
Sbjct: 484 WNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAAN-------LPALYYGK 536

Query: 389 EKHGLT----YTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           E HG      +++D +  + ++D+ ++ G    A  V + M  K ++  W S++     H
Sbjct: 537 EMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGK-NEVSWNSIIAAYGNH 595

Query: 443 G 443
           G
Sbjct: 596 G 596



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 139/316 (43%), Gaps = 8/316 (2%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L S+  A S    ++  +++H  ++  G        S +  +Y  CG   +A  +F ++ 
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE 73

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R  + W  MI   +  G  +     + +++ S + P+ +TF  V+ AC       L   
Sbjct: 74  LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMV 133

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH     +G+    FA SAL+ +Y+  G + ++++VF+ +P  D + W  ++ GY ++G 
Sbjct: 134 VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGD 193

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            D A+  F  +  S +  + + +  +L+ C   G    G Q  H +    G  +      
Sbjct: 194 FDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQ-LHGLVIGSGFEFDPQVAN 252

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IE 459
            +V + ++ G    A  + + MP + D   W  L+ G   +G  D A     A+    ++
Sbjct: 253 TLVAMYSKCGNLLYARKLFNTMP-QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 311

Query: 460 PENPATYVTMANIYAS 475
           P++    VT A+   S
Sbjct: 312 PDS----VTFASFLPS 323


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 161/473 (34%), Positives = 271/473 (57%), Gaps = 34/473 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D L N  R+   +QI   +  P+   Y S+++ C +   LE G+++HS +  + F+   
Sbjct: 451 LDDLRNSFRIFRQMQIEEIV--PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA 508

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           ++ + L+DMYAK G                                L+ A ++      +
Sbjct: 509 YVCSVLIDMYAKLGK-------------------------------LDTAWDILIRFAGK 537

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  SWT MI+GY +YN   +AL  +R M +     S++  L++ +SA + +Q L+ G++I
Sbjct: 538 DVVSWTTMIAGYTQYNFDDKALTTFRQMLD-RGIRSDEVGLTNAVSACAGLQALKEGQQI 596

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H     +GF SD    +AL  +Y KCG+I EA   F++    D ++W A++  + Q G  
Sbjct: 597 HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNN 656

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   +F+ + + GI  N FTF   + A ++ A  + GKQVH  +T+ GYD  +   +A+
Sbjct: 657 EEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAI 716

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + MY+KCG++ ++KK F  +   + VSW ++I  Y+++G   +AL+ F+ ++ S  +P+H
Sbjct: 717 ISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNH 776

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           +  VGVL+AC+H GLVDKG++YF S+  ++GL    +HY C+VD+L R+G    A+D I 
Sbjct: 777 VTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFIL 836

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +MP++PD  +W +LL  C +H N+++ + AA  L E+EPE+ ATYV ++N+YA
Sbjct: 837 EMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 889



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 198/428 (46%), Gaps = 34/428 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P  +SS++  C++  +LE G+++H  +   GF    ++ N L+ +Y   G++  A+ +
Sbjct: 269 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHI 328

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M +RD  +YNT+I+G ++ G  E+A  LF  M Q D               +P    
Sbjct: 329 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM-QLDGL-------------EP---- 370

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         +  TL+S++ A S+   L  G+++H Y  + GF S++ +  AL ++
Sbjct: 371 --------------DSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNL 416

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  I  A   F +    +VV W  M+  Y         F +F ++    I PN +T+
Sbjct: 417 YAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 476

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C      ELG+Q+H  + +  +   ++  S L+ MY+K G ++ +  +      
Sbjct: 477 PSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 536

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWT++IAGY Q    DKAL  F  +L  G + D +     ++AC     + +G Q 
Sbjct: 537 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQ 595

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+     G +        +V L ++ G   EA     +     D   W +L+ G +  G
Sbjct: 596 IHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTE-AGDNIAWNALVSGFQQSG 654

Query: 444 NLDLAKRA 451
           N + A R 
Sbjct: 655 NNEEALRV 662



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 195/420 (46%), Gaps = 34/420 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +  +SL+  C  +  L  G+++H++    GF     I   LL++YAKC +I  A   
Sbjct: 370 PDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNY 429

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F E +  +V  +N M+  +   G L+  RN F                            
Sbjct: 430 FLETEVENVVLWNVMLVAY---GLLDDLRNSFR--------------------------- 459

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++R MQ  E  V N++T  S+L     +  L LG++IH  I++T F  +  V S L DM
Sbjct: 460 -IFRQMQ-IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDM 517

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G ++ A  I  +   +DVVSWT MI  Y Q    ++    F +++  GIR +    
Sbjct: 518 YAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 577

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              ++ACA   A + G+Q+H      G+       +ALV +YSKCGN+E +   F     
Sbjct: 578 TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEA 637

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D ++W +L++G+ Q+G  ++AL  F  + + G   ++  F   + A +    + +G Q 
Sbjct: 638 GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ- 696

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H++  K G     +    I+ + A+ G   +A+    ++ MK ++  W +++     HG
Sbjct: 697 VHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMK-NEVSWNAMINAYSKHG 755



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 196/415 (47%), Gaps = 36/415 (8%)

Query: 24  PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+      L++ C + N +L+EG+K+HS +   GF     +S  LLD Y           
Sbjct: 65  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFY----------- 113

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF                     G L+ A  +FDEMP+R  F+W  MI      +   + 
Sbjct: 114 LFK--------------------GDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKV 153

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC-LRLGKEIHGYIMRTGFDSDEVVWSALS 201
             L+  M N EN   N+ T S VL A         + ++IH  I+  G     +V + L 
Sbjct: 154 FCLFGRMVN-ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLI 212

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y + G ++ AR++FD +  +D  SW AMI    +     E   LF ++   GI P  +
Sbjct: 213 DLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPY 272

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
            F+ VL+AC    + E+G+Q+HG + ++G+   ++  +ALV +Y   G++ +++ +F+ M
Sbjct: 273 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNM 332

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
            + D V++ +LI G +Q G  +KA+E F+ +   G +PD      ++ AC+  G +  G 
Sbjct: 333 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG- 391

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           Q  H+   K G          +++L A+      A +   +  ++ +  LW  +L
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVE-NVVLWNVML 445



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 196/421 (46%), Gaps = 45/421 (10%)

Query: 24  PSPSIYSSLIQFCRQNR-ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+   +S +++ CR    A +  +++H+ +   G      + N L+D+Y           
Sbjct: 167 PNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLY----------- 215

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                               ++ G +++AR +FD +  +D+ SW AMISG  +    +EA
Sbjct: 216 --------------------SRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEA 255

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + L+  M      +   +  SSVLSA   I+ L +G+++HG +++ GF SD  V +AL  
Sbjct: 256 IRLFCDMYVL-GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVS 314

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y   GS+  A  IF  M  RD V++  +I    Q G  E+   LF  +   G+ P++ T
Sbjct: 315 LYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNT 374

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            A ++ AC+       G+Q+H Y T++G+        AL+++Y+KC ++E +   F    
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETE 434

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ---PDHIVFVGVLTACTHAGLVDK 379
             ++V W  ++  Y   G+ D     F +  +   +   P+   +  +L  C   G ++ 
Sbjct: 435 VENVVLWNVMLVAY---GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL 491

Query: 380 GLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           G Q    I +    ++  + Y C  ++D+ A+ G+   A D++ +   K D   W +++ 
Sbjct: 492 GEQIHSQIIKT---SFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIA 547

Query: 438 G 438
           G
Sbjct: 548 G 548


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  321 bits (822), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/481 (37%), Positives = 259/481 (53%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC + +LK+A+++L Q S PS   Y  LI  C    +L +  +VH H+  +G     
Sbjct: 53  IQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDP 112

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++  L+ MY+  G                               S++ AR +FD+  +R
Sbjct: 113 FLATKLIGMYSDLG-------------------------------SVDYARKVFDKTRKR 141

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC----LRL 177
             + W A+           E L LY  M N     S++FT + VL A  A +C    L  
Sbjct: 142 TIYVWNALFRALTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTVNHLMK 200

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIH ++ R G+ S   + + L DMY + G ++ A  +F  M  R+VVSW+AMI  Y +
Sbjct: 201 GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAK 260

Query: 238 EGRREEGFALFSELIK--SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            G+  E    F E+++      PN+ T   VL ACA  AA E GK +HGY+ R G D   
Sbjct: 261 NGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSIL 320

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              SALV MY +CG +E  ++VF+ M   D+VSW SLI+ Y  +G   KA++ FE +L +
Sbjct: 321 PVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLAN 380

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P  + FV VL AC+H GLV++G + F ++   HG+    +HYAC+VDLL R+ R  E
Sbjct: 381 GASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDE 440

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  ++  M  +P   +W SLLG CRIHGN++LA+RA+  LF +EP+N   YV +A+IYA 
Sbjct: 441 AAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAE 500

Query: 476 A 476
           A
Sbjct: 501 A 501


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 175/481 (36%), Positives = 266/481 (55%), Gaps = 41/481 (8%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  LC+  RL+EAL    ++    P I    Y +L+  C   RAL EG++VH+H+  + +
Sbjct: 26  ISQLCSNGRLQEALL---EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRY 82

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
            P  ++   LL  Y KC                                 LE AR + DE
Sbjct: 83  LPATYLRTRLLIFYGKCD-------------------------------CLEDARKVLDE 111

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+++  SWTAMIS Y +     EAL ++  M   +    N+FT ++VL++      L L
Sbjct: 112 MPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGK-PNEFTFATVLTSCIRASGLAL 170

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK+IHG I++  +DS   V S+L DMY K G I EAR+IF+ + +RDVVS TA+I  Y Q
Sbjct: 171 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQ 230

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  EE   +F  L   G+RPN  T+A +L A +  A  + GKQ H ++ R     Y+  
Sbjct: 231 LGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL 290

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSG 356
            ++L+ MYSKCGN+  ++++F+ MP    +SW +++ GY+++G+  + LE F L+  +  
Sbjct: 291 QNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR 350

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHS-IKEKHGLTYTADHYACIVDLLARSGRFHE 415
            +PD +  + VL+ C+H  + D GL  +   +  ++G+    +HY CIVD+L R+GR  E
Sbjct: 351 VKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDE 410

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A + I +MP KP   +  SLLG CR+H ++D+ +     L EIEPEN   YV ++N+YAS
Sbjct: 411 AFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYAS 470

Query: 476 A 476
           A
Sbjct: 471 A 471


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 175/485 (36%), Positives = 268/485 (55%), Gaps = 73/485 (15%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S +  C     L  G +VH+ +  S +   V++ + L+DMY+KCG+++          
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA---------- 199

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
               C                 A  +F  M +R+  +W ++I+ Y +     EAL+++ R
Sbjct: 200 ----C-----------------AEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVR 238

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGK 206
           MM +      ++ TL+SV+SA +++  L+ G +IH  +++T  F  D V+ +AL DMY K
Sbjct: 239 MMDS--GLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAK 296

Query: 207 CGSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRY 235
           C  +NEAR++FD                               KM  R+VVSW A+I  Y
Sbjct: 297 CSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGY 356

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G  EE   LF  L +  I P  +TF  +L+ACA+ A   LG+Q H ++ + G++  S
Sbjct: 357 TQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQS 416

Query: 296 ------FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                 F  ++L+ MY KCG++E+  +VF  M   D VSW ++I GYAQNG   +AL+ F
Sbjct: 417 GAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIF 476

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +L  G +PDH+  +GVL AC+HAGLV++G  YF S+ E+HGL    DHY C+VDLL R
Sbjct: 477 RKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGR 535

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G  +EA+++I  MP+ PD  +W SLL  C++HGN+++ K AAE L EI+P N   YV +
Sbjct: 536 AGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLL 595

Query: 470 ANIYA 474
           +N+YA
Sbjct: 596 SNMYA 600



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 238/453 (52%), Gaps = 41/453 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ S ++ L+  C ++R+    + VH+ +  + F   +FI N L+D+Y KC  + DA+ L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M +R+  ++N++IS  TK G L++A  LF  MP+ D  SW +M+SG+ ++++  E+L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           + +  M   E+ + N+++  S LSA + +  L +G ++H  + ++ + +D  + SAL DM
Sbjct: 133 EYFVKMHR-EDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+  A ++F  M++R++V+W ++I  Y Q G   E   +F  ++ SG+ P+  T 
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFN--- 319
           A V++ACA   A + G Q+H  + +   +       +ALV MY+KC  V  +++VF+   
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 320 ----------------------------GMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                                        M + ++VSW +LIAGY QNG  ++AL  F L
Sbjct: 312 IRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRL 371

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI------VD 405
           L +    P H  F  +L+AC +   +  G Q  H+   K G  + +   + I      +D
Sbjct: 372 LKRESIWPTHYTFGNLLSACANLADLLLGRQA-HTHVLKQGFEFQSGAESDIFVGNSLID 430

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +  + G   +   V  KM  + D   W +++ G
Sbjct: 431 MYMKCGSIEDGSRVFEKMKER-DCVSWNAIIVG 462



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 43/244 (17%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF------KPGV 61
           +EAL++   +      P+   + +L+  C     L  G++ H+H+   GF      +  +
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDI 422

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+ N L+DMY KCG+I D   +F++M+ERD  S+N +I G+ + G   +A  +F +M   
Sbjct: 423 FVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM--- 479

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                  ++ G     +P                  +  T+  VL A S    +  G+  
Sbjct: 480 -------LVCG----EKP------------------DHVTMIGVLCACSHAGLVEEGRHY 510

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGR 240
              +   G    +  ++ + D+ G+ G +NEA+ + + M V+ D V W +++      G 
Sbjct: 511 FFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGN 570

Query: 241 REEG 244
            E G
Sbjct: 571 IEMG 574



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 39/220 (17%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           L++    PN+  FA +L++C    +    + VH  +    +    F  + L+ +Y KC  
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 311 VENSKKVFN-------------------------------GMPRPDLVSWTSLIAGYAQN 339
           +++++K+F+                                MP PD  SW S+++G+AQ+
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTAD 398
              +++LEYF  + +     +   F   L+AC  AGL+D  +    H++  K    Y+ D
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSAC--AGLMDLNMGTQVHALVSKS--RYSTD 181

Query: 399 HY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            Y  + ++D+ ++ G    AE+V S M ++ +   W SL+
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLI 220


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 265/478 (55%), Gaps = 35/478 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           +  LC+  +LKEAL  +  +        Y S++  C   RA+ EG++VH+H+  + + P 
Sbjct: 37  LKTLCSSGQLKEALLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPS 96

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V++   L+ +Y KC  + DA                               R +FDEMPQ
Sbjct: 97  VYLRTRLIVLYNKCDCLGDA-------------------------------RGMFDEMPQ 125

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R+  SWTAMIS Y +     EAL+L+  M    ++  N FT +++L++         G++
Sbjct: 126 RNVVSWTAMISAYSQRGFAFEALNLFVEMLR-SDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH   ++  ++S   V S+L DMY K G I +A  +F  + +RDVV+ TA+I  Y Q G 
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF +L   G+  N+ T+A VL A +  AA   GKQVH ++ R G   Y    ++
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 304

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQP 359
           L+ MYSKCGNV  ++++F+ MP    +SW +++ GY+++GM  + LE F+L+ +    +P
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 364

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHS-IKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           D I ++ VL+ C+H  L D GL+ F++ +  K G+     HY C+VDLL R+GR  EA D
Sbjct: 365 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 424

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            I KMP  P   +W SLLG CR+H ++++     + L E+EPEN   YV ++N+YASA
Sbjct: 425 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASA 482


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 184/484 (38%), Positives = 272/484 (56%), Gaps = 44/484 (9%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC Q  L +AL++L    +P+   Y  LI  C    +L + ++VH HL  +GF    
Sbjct: 46  IQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDP 105

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++  L++MY+   +I +A+ +FD+ + R +  YN +    +  G  E            
Sbjct: 106 FLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGE------------ 153

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV---SNKFTLSSVLSAVSAIQC---- 174
                              E L++YR M    NS+   S++FT + VL A  A +C    
Sbjct: 154 -------------------EVLNMYRRM----NSIGIPSDRFTYTYVLKACVASECFVSL 190

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L  G+EIH +I+R G+D    + + L DMY K G ++ A  +F++M  ++VVSW+AMI  
Sbjct: 191 LNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIAC 250

Query: 235 YFQEGRREEGFALFSELI--KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
           Y + G+  E   LF EL+     + PN+ T   VL ACA  AA E G+ +HGY+ R G D
Sbjct: 251 YAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLD 310

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                 SALV MY++CG +E  ++VF+ M + D+VSW SLI+ Y  +G   KA+  FE +
Sbjct: 311 SILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEM 370

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
             +G +P  I FV VL AC+HAGLVD+G   F+S+   HG+  + +HYAC+VDLL R+ R
Sbjct: 371 TYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANR 430

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
             EA  +I  M ++P   +W SLLG CRIH N++LA+RA+  LF++EP N   YV +A+I
Sbjct: 431 LEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADI 490

Query: 473 YASA 476
           YA A
Sbjct: 491 YAEA 494


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 260/457 (56%), Gaps = 34/457 (7%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN--CLLDMYAKCGNISD 79
           ++P+   ++ ++  C     +  G ++H  + SSG +    ++N   L+D+Y KC     
Sbjct: 244 TNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKC----- 298

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
                     RDV                E AR +FD+    D    TAMISGYV     
Sbjct: 299 ----------RDV----------------EMARKIFDQRTPVDIVVCTAMISGYVLNGMN 332

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             AL+++R +   E   +N  TL+SVL A + +  L LGKE+HG+I++ G      V SA
Sbjct: 333 NNALEIFRWLLQ-ERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSA 391

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           + DMY KCG ++ A Q F  + D+D V W +MI    Q G+ EE   LF ++  +G + +
Sbjct: 392 IMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYD 451

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             + +  L+ACA+  A   GK++H +M R  +    FA SAL+ MYSKCGN++ + +VF+
Sbjct: 452 CVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFD 511

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   + VSW S+IA Y  +G    +L  F  +L  G QPDH+ F+ +++AC HAG VD+
Sbjct: 512 TMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDE 571

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G+ YF  + E+ G+    +HYAC+VDL  R+GR +EA  +I+ MP  PD  +W +LLG C
Sbjct: 572 GIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGAC 631

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           R+HGN++LA+ A+  LF+++P+N   YV ++N++A+A
Sbjct: 632 RLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANA 668



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 209/430 (48%), Gaps = 48/430 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +I+ C    ++  G+ VH  ++  GF+  VF+ + L+  Y++ G I DA+ L
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  +D   +N M++G+ K G  + A  +F EM                         
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM------------------------- 239

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS--ALS 201
              R  +   NSV    T + VLS  ++   +  G ++HG ++ +G + D  V +  AL 
Sbjct: 240 ---RRTETNPNSV----TFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALI 292

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y KC  +  AR+IFD+    D+V  TAMI  Y   G       +F  L++  +R N+ 
Sbjct: 293 DIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSV 352

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T A VL ACA  AA  LGK++HG++ + G+    +  SA++ MY+KCG ++ + + F G+
Sbjct: 353 TLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGI 412

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D V W S+I   +QNG P++A++ F  +  +GT+ D +     L+AC +       L
Sbjct: 413 SDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACAN-------L 465

Query: 382 QYFHSIKEKHGL----TYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
              H  KE H       + +D +A   ++D+ ++ G    A  V   M  K ++  W S+
Sbjct: 466 PALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEK-NEVSWNSI 524

Query: 436 LGGCRIHGNL 445
           +     HG L
Sbjct: 525 IAAYGNHGRL 534



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 206/443 (46%), Gaps = 44/443 (9%)

Query: 7   NQRRLKEALQI-LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           N   + + LQ  +H     +P + S ++Q C     L +G++ H+ +  +G      +  
Sbjct: 27  NSVNIGKPLQFSIHNDDSLAPQLVS-ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGT 85

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCS--YNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            LL MY  CG   DA+ +F   Q R  CS  +N MI GFT  G  + A            
Sbjct: 86  KLLGMYVLCGAFLDAKNIF--YQLRLWCSEPWNWMIRGFTMMGQFDFA------------ 131

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
                              L  ++M+     ++ +K+T   V+ A   +  + LG+ +H 
Sbjct: 132 ------------------LLFYFKMLGC--GTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            I   GF+ D  V S+L   Y + G I++AR +FD+M  +D V W  M+  Y + G  + 
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS--AL 301
              +F E+ ++   PN+ TFA VL+ CA       G Q+HG +   G +  S  A+  AL
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFAL 291

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + +Y KC +VE ++K+F+     D+V  T++I+GY  NGM + ALE F  LL+   + + 
Sbjct: 292 IDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANS 351

Query: 362 IVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           +    VL AC     +  G + + H +K  HG +      + I+D+ A+ GR   A    
Sbjct: 352 VTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG--SAIMDMYAKCGRLDLAHQTF 409

Query: 421 SKMPMKPDKFLWASLLGGCRIHG 443
             +  K D   W S++  C  +G
Sbjct: 410 IGISDK-DAVCWNSMITSCSQNG 431



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 45/247 (18%)

Query: 6   CNQR-RLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           C+Q  + +EA+ +  Q+            S+ +  C    AL  GK++H+ +    F+  
Sbjct: 427 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSD 486

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM-- 118
           +F  + L+DMY+KCGN+  A  +FD M+E++  S+N++I+ +   G L+ + NLF  M  
Sbjct: 487 LFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLG 546

Query: 119 --PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
              Q D+ ++ A+IS      Q  E +  +R M                           
Sbjct: 547 DGIQPDHVTFLAIISACGHAGQVDEGIHYFRCM--------------------------- 579

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRY 235
              E  G + R         ++ + D++G+ G +NEA  + + M    D   W  ++G  
Sbjct: 580 --TEELGIMARMEH------YACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGAC 631

Query: 236 FQEGRRE 242
              G  E
Sbjct: 632 RLHGNVE 638


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 285/509 (55%), Gaps = 42/509 (8%)

Query: 6   CNQRRLKEALQILHQIS-HP------SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK 58
           CN R  KEA+ +   +S +P         + ++++  C    AL+ GK++H+ +     +
Sbjct: 147 CNGRP-KEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVE 205

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
               + + L+++Y KCG+I  A  + + M+E D  S + +ISG+   G +  AR +F   
Sbjct: 206 FDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLK 265

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRL 177
                  W +MISGYV  N+ +EAL+L+  M+     V   + T +SVLSA S +  +  
Sbjct: 266 SNACVVLWNSMISGYVANNEALEALELFNNMR--RKGVQEDYSTFASVLSACSTLGIIDQ 323

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKC------------------------------ 207
           G ++H ++ + GF +D ++ SAL DMY KC                              
Sbjct: 324 GIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSN 383

Query: 208 -GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G I++ARQIFD M  + ++SW +MI  + Q     E   LF E+ K G+R + F+ AGV
Sbjct: 384 CGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGV 443

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++ACA  ++ ELG+Q+    T IG +     +++LV  Y KCG VE+ +K+F+ M + D 
Sbjct: 444 ISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDE 503

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V W S++ GYA NG   +AL  F+ +   G QP  I FVGVL+AC H GLV++G ++F++
Sbjct: 504 VPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYA 563

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +K  + +    +HY+C+VDL AR+G   +A ++I +MP+K D  +W+S+L GC  HGN  
Sbjct: 564 MKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNI 623

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYAS 475
           L K+ A+ + +++PEN   YV ++ IYA+
Sbjct: 624 LGKKVAKRIIDLDPENSGAYVQLSGIYAT 652



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 230/505 (45%), Gaps = 98/505 (19%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVF-ISNCLLDMYAKCGNISDAQTLFDEMQERDVCS 94
           C    ++  G+ +H     SG    V  I N LL MY++C ++ +AQ LF+EM +R+  S
Sbjct: 16  CNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFS 75

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR----------YNQ------ 138
           +NTMI G+ K GS  ++  LFD MP +D FSW  +ISG+ +          +N+      
Sbjct: 76  WNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNG 135

Query: 139 ---------------PIEALDLYR--MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                          P EA+ L++   +   E    + F L++V+ A + +  L  GK+I
Sbjct: 136 IAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQI 195

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSI------------------------------- 210
           H  I+    + D V+ S+L ++YGKCG I                               
Sbjct: 196 HARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRM 255

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           N+AR+IF    +  VV W +MI  Y       E   LF+ + + G++ +  TFA VL+AC
Sbjct: 256 NDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSAC 315

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK----------------------- 307
           +     + G QVH ++ ++G+       SALV MYSK                       
Sbjct: 316 STLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLN 375

Query: 308 --------CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
                   CG +++++++F+ MP   L+SW S+I G++QN  P +AL+ F  + K G + 
Sbjct: 376 SMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRM 435

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D     GV++AC     ++ G Q F +     GL +       +VD   + G       +
Sbjct: 436 DKFSLAGVISACASISSLELGEQIF-ARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKL 494

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGN 444
             +M MK D+  W S+L G   +G+
Sbjct: 495 FDRM-MKSDEVPWNSMLMGYATNGH 518



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 21/223 (9%)

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNG 320
           + A  L +C ++ +   G+ +H    + G      +  + L+ MYS+C ++  ++++F  
Sbjct: 8   SLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           MP+ +  SW ++I GY ++G   K+LE F+    S    D   +  V++     G ++  
Sbjct: 68  MPKRNCFSWNTMIEGYLKSGSKGKSLELFD----SMPHKDAFSWNVVISGFAKEGNLEVA 123

Query: 381 LQYFHSIKEKHGLTYTA--DHYACIVDLLARSGRFHEAEDVISKMPMKP------DKFLW 432
            + F+ +  K+G+ + +    YAC       +GR  EA  +   + + P      D F+ 
Sbjct: 124 RRLFNEMPWKNGIAWNSMIHGYAC-------NGRPKEAVGLFKDLSLNPLERFCGDTFVL 176

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYA 474
           A+++G C   G LD  K+    +   E E +     ++ N+Y 
Sbjct: 177 ATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYG 219


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 173/466 (37%), Positives = 266/466 (57%), Gaps = 45/466 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGK-KVHSHLKSSGFKPGVFISNCLLD 69
           L  AL++   ++  +   ++S++      R    GK KV   L     +P +F  N +L 
Sbjct: 21  LNSALRVFESMTVKTTVTWNSMLAGYSNRR----GKIKVARQLFDRIPEPDIFSYNIMLA 76

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y    ++  A+  FD+M  +D  S+NTMISGF++ G ++QAR LF  MP R++ SW AM
Sbjct: 77  CYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAM 136

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           ISGYV        LDL + +          F ++ V S V+                   
Sbjct: 137 ISGYVESGD----LDLAKQL----------FEVAPVRSVVA------------------- 163

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
                  W+A+   + K G I  A + F++M  +++V+W AMI  Y +  + E G  LF 
Sbjct: 164 -------WTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFK 216

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            +++SG RPN  + + VL  C++ +A +LGKQVH  + +        A ++L+ MY KCG
Sbjct: 217 RMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCG 276

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           ++E++ K+F  MP+ D+V+W ++I+GYAQ+G  +KAL  F+ +   G +PD I FV VL+
Sbjct: 277 DLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLS 336

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC HAG VD G++YF+S+   +G+    DHY C+VDLL R G+  EA D+I KMP KP  
Sbjct: 337 ACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHS 396

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            ++ +LLG CRIH NL+LA+ AA+ L  ++PE+ A YV +AN+YA+
Sbjct: 397 AIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAA 442


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 177/485 (36%), Positives = 265/485 (54%), Gaps = 72/485 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S +  C     L  G ++H+ +  S +   V++ + L+DMY+KCG ++ AQ       
Sbjct: 154 FGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQ------- 206

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                     FD M  R+  SW ++I+ Y +     +AL+++ M
Sbjct: 207 ------------------------RAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVM 242

Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSDMYGK 206
           M   +N V  ++ TL+SV+SA ++   +R G +IH  ++ R  + +D V+ +AL DMY K
Sbjct: 243 M--MDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300

Query: 207 CGSINEARQIFDKM-------------------------------VDRDVVSWTAMIGRY 235
           C  +NEAR +FD+M                               ++++VVSW A+I  Y
Sbjct: 301 CRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGY 360

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH------GYMTRI 289
            Q G  EE   LF  L +  I P  +TF  +LNACA+ A  +LG+Q H      G+  + 
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQS 420

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G +   F  ++L+ MY KCG VE+   VF  M   D+VSW ++I GYAQNG    ALE F
Sbjct: 421 GEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIF 480

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +L SG +PDH+  +GVL+AC+HAGLV++G +YFHS++ + GL    DH+ C+VDLL R
Sbjct: 481 RKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGR 540

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +G   EA D+I  MPM+PD  +W SLL  C++HGN++L K  AE L EI+P N   YV +
Sbjct: 541 AGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLL 600

Query: 470 ANIYA 474
           +N+YA
Sbjct: 601 SNMYA 605



 Score =  234 bits (597), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 239/461 (51%), Gaps = 41/461 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +++ ++     S ++ L+  C ++++  + +++H+ +  + F   +FI N L+D Y KCG
Sbjct: 9   KLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCG 68

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
              DA+ +FD M +R+  SYN ++S  TK G L++A N+F  MP+ D  SW AM+SG+ +
Sbjct: 69  YFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQ 128

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           +++  EAL  +  M + E+ V N+++  S LSA + +  L +G +IH  I ++ +  D  
Sbjct: 129 HDRFEEALRFFVDMHS-EDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVY 187

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + SAL DMY KCG +  A++ FD M  R++VSW ++I  Y Q G   +   +F  ++ +G
Sbjct: 188 MGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNG 247

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENS 314
           + P+  T A V++ACA  +A   G Q+H  +  R  Y       +ALV MY+KC  V  +
Sbjct: 248 VEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEA 307

Query: 315 KKVFNGMP-------------------------------RPDLVSWTSLIAGYAQNGMPD 343
           + VF+ MP                                 ++VSW +LIAGY QNG  +
Sbjct: 308 RLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENE 367

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +A+  F LL +    P H  F  +L AC +   +  G Q  H+   KHG  + +   + I
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQA-HTQILKHGFWFQSGEESDI 426

Query: 404 ------VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                 +D+  + G   +   V  +M ++ D   W +++ G
Sbjct: 427 FVGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSWNAMIVG 466


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 170/466 (36%), Positives = 270/466 (57%), Gaps = 14/466 (3%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVH-SHLKS---SGFKPGVFISNCLLDMYAKCGN 76
           ++H  PS    L+  C +   L  G  +H S +KS   S    GV I N L+ MY +CG 
Sbjct: 43  LNHLDPSF---LLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGK 99

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGS-------LEQARNLFDEMPQRDNFSWTAM 129
           + DA  +FDEM  RD  S+N +I GF + G+       +     +F EM +R+  +WTA+
Sbjct: 100 LPDAVKVFDEMITRDTISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAV 159

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           ISG  +      +L L++ M ++ +   N  T  S+L+A S ++ L+ G +IHG IM+ G
Sbjct: 160 ISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLG 219

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
             SD  + SAL DMY K G I EA +IF+   + D+VS T ++  +   G  EE   +F 
Sbjct: 220 IQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFL 279

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           +++K GI  +    + VL       +  LG+QVH ++ +  +    F ++ L++MYSKCG
Sbjct: 280 KMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCG 339

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            ++ S KVF+ M   + V+W S+IA +A++G   KAL+ +E +   G +P  + F+ +L 
Sbjct: 340 ALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLH 399

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+HAGLV KG+++  S+ + HG+   ++H+AC+VD+L R+G   EA + I K+P +P  
Sbjct: 400 ACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGL 459

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +W +LLG C ++G+  + K AAE LF   P++P  YV +ANIY+S
Sbjct: 460 LVWQALLGACSLYGDSKIGKYAAEHLFSETPDSPVPYVLLANIYSS 505



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 34/230 (14%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C +  ++  L++L        ++ S ++     + +L  G++VHS +    F    F+SN
Sbjct: 270 CEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSN 329

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L++MY+KCG + ++  +FD M+ER+  ++N+MI+ F                       
Sbjct: 330 GLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFA---------------------- 367

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                    R+   ++AL LY  MQ  E +     T  S+L A S    ++ G E    +
Sbjct: 368 ---------RHGDALKALQLYEDMQ-LEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSM 417

Query: 186 MRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD-VVSWTAMIG 233
            +  G +      + + DM G+ G ++EAR   +K+ ++  ++ W A++G
Sbjct: 418 TKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLG 467


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/466 (36%), Positives = 271/466 (58%), Gaps = 9/466 (1%)

Query: 12  KEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           + A Q +HQ +  S +I   LI    QN    EG ++   +   G +        LL   
Sbjct: 476 RAAFQGIHQRNVFSWTI---LISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGAC 532

Query: 72  AKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +  G++S  +T+ + ++    E D+ + N +++ +T   SL++AR +F+ M  RD  SWT
Sbjct: 533 SVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWT 592

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            +IS Y     P+EAL LYR M+  E S  +  TL SVL A ++++ L  GK IH  I+ 
Sbjct: 593 IIISAYAHAGYPLEALQLYRRMEQ-EFSRPDAVTLISVLEACASLRALVEGKAIHERIVA 651

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +G ++D  V +A+   YGKC ++ +ARQ+FD+++D+D+V W AMIG Y Q    E+ FAL
Sbjct: 652 SGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFAL 711

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           + E++++ + PN  T   +L++C+     E G  +H      GY  ++   +AL++MY+K
Sbjct: 712 YLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAK 771

Query: 308 C-GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           C GN+E ++  F  +   ++VSW+S++A YA+NG  D+A   F  + + G  P+ + F  
Sbjct: 772 CCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTS 831

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL AC+HAGL D+G  YF S++  H L  T +HY C+V+LLA+SGR  +A   +S MP++
Sbjct: 832 VLHACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQ 891

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
           PD   W SLLG C +H + +    AA+ L + EP N A YV + NI
Sbjct: 892 PDASAWRSLLGACEVHTDKEYGALAAKQLLDAEPRNSAAYVLLYNI 937



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 197/394 (50%), Gaps = 38/394 (9%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           +GK++H+ + SSG    V +SN L+ MY KCG++ +A+  FD M ERD+ S+N       
Sbjct: 28  QGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWN------- 80

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
                                   AMI+ Y ++    +A+ LY      E +  ++ T +
Sbjct: 81  ------------------------AMITVYAQHECGKQAIQLY-AYSRLEGTKPDEVTFA 115

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           S+L+A  A   L+ G+ +H + + T F SD++V + L  MY  CGS+++A  +F+     
Sbjct: 116 SLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRP 175

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DV +WT +I  Y + G+ E  FA +S++ + G+R N  TF  VL+ C+     E GK VH
Sbjct: 176 DVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVH 235

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCG-NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
                 G D      ++L+ MY KC  + + +++VF  + RP ++SW++ IA Y Q+   
Sbjct: 236 RLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHW-- 293

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
            +A++ FEL+   G +P+      VL AC   G  ++G +  H++      T        
Sbjct: 294 -EAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQG-RRIHALVLAGPYTQNTTVLNA 351

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
              L A+  R  +A  V S +P K D   W +++
Sbjct: 352 AASLYAKCSRVADASRVFSSIPCK-DAVSWNAIV 384



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 215/475 (45%), Gaps = 78/475 (16%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P    ++SL+  C  +  L+ G+ +H H   + F     + N L+ MY+ CG++ DA 
Sbjct: 107 TKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDAT 166

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +F+     DVC++ T+I+ +T+ G LE A   + +M Q                     
Sbjct: 167 AVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQ--------------------- 205

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
                      E   SN+ T  +VL   S+++ L  GK +H   + +G D    + ++L 
Sbjct: 206 -----------EGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLI 254

Query: 202 DMYGKCGS-INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            MYGKC    +EAR++F ++    V+SW+A I  Y   G+  E    F  +   G++PNA
Sbjct: 255 SMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAY---GQHWEAIKTFELMNLEGVKPNA 311

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T   VL ACA   A E G+++H  +    Y   +   +A   +Y+KC  V ++ +VF+ 
Sbjct: 312 TTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSS 371

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV--- 377
           +P  D VSW ++++ YA+ G+   A+     +   G  PD I F+ +L +C+ + L+   
Sbjct: 372 IPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQY 431

Query: 378 --DKGL---QYFHSIKEKHGL---TYTAD----------------------------HYA 401
              K L   +  HS    +GL   TY  +                             + 
Sbjct: 432 GNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWT 491

Query: 402 CIVDLLARSGRFHEAEDVISKMPM---KPDKFLWASLLGGCRIHGNLDLAKRAAE 453
            ++ LL ++G   E  +++  M +   + +K  + SLLG C + G+L L K   E
Sbjct: 492 ILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHE 546



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 192/424 (45%), Gaps = 43/424 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ +  +S+++ C    A E+G+++H+ + +  +     + N    +YAKC  ++DA   
Sbjct: 309 PNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADAS-- 366

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         +F  +P +D  SW A++S Y +     +A+
Sbjct: 367 -----------------------------RVFSSIPCKDAVSWNAIVSAYAKQGLFRDAI 397

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL---------GKEIHGYIMRTGFDSDE 194
            L R MQ  E  V +  T  ++L + S    L+          G+++H  ++  G D D 
Sbjct: 398 FLSRQMQ-VEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDT 456

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            + + L  MYG+CGS+++AR  F  +  R+V SWT +I    Q G   EG  L   +   
Sbjct: 457 YLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLE 516

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G   N  TF  +L AC+      LGK +H  +   G +     ++AL++MY+ C +++ +
Sbjct: 517 GTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEA 576

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + VF  M   D+VSWT +I+ YA  G P +AL+ +  + +  ++PD +  + VL AC   
Sbjct: 577 RLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASL 636

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             + +G +  H      G+         +V    +     +A  V  ++ +  D   W +
Sbjct: 637 RALVEG-KAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRI-LDKDIVCWNA 694

Query: 435 LLGG 438
           ++G 
Sbjct: 695 MIGA 698



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 153/289 (52%), Gaps = 3/289 (1%)

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           + E    ++ TL + +SA +A+     GK+IH  I+ +G  +  ++ ++L  MYGKCGS+
Sbjct: 2   DLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSV 61

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EAR  FD+M +RD++SW AMI  Y Q    ++   L++     G +P+  TFA +LNAC
Sbjct: 62  EEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNAC 121

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
                 + G+ +H +     +       + L+ MYS CG+++++  VF    RPD+ +WT
Sbjct: 122 FASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWT 181

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++IA Y ++G  + A   +  + + G + + I F+ VL  C+   +++ G ++ H +   
Sbjct: 182 TVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETG-KHVHRLALG 240

Query: 391 HGLTYTADHYACIVDLLARSGRF-HEAEDVISKMPMKPDKFLWASLLGG 438
            GL ++      ++ +  +  R   EA +V  ++  +P    W++ +  
Sbjct: 241 SGLDFSLRMENSLISMYGKCSRHPDEAREVFLRIS-RPSVISWSAFIAA 288



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 120/303 (39%), Gaps = 68/303 (22%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C ++     L+++     P+     +L+  C     +E G  +H    + G+     + N
Sbjct: 704 CEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVN 763

Query: 66  CLLDMYAK-CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
            L++MYAK CGN+  AQT F+ +  ++V S++++++ + + G  ++ARNLF         
Sbjct: 764 ALINMYAKCCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLF--------- 814

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
            WT                       N +  + N  T +SVL A S           H  
Sbjct: 815 -WT----------------------MNQDGVLPNIVTFTSVLHACS-----------HAG 840

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +   G       WS    M G            D  ++     +  M+    + GR ++ 
Sbjct: 841 LADEG-------WSYFLSMQG------------DHHLEPTPEHYGCMVNLLAKSGRVKQA 881

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
            +  S +    ++P+A  +  +L AC  H  +E G      +  +  +P + AA  L++ 
Sbjct: 882 ASFMSAM---PVQPDASAWRSLLGACEVHTDKEYGALAAKQL--LDAEPRNSAAYVLLYN 936

Query: 305 YSK 307
            SK
Sbjct: 937 ISK 939


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 263/470 (55%), Gaps = 37/470 (7%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL++  ++      P     +++I  C +   LE GK++H  L  SGF    F+S+ L
Sbjct: 381 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSAL 440

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY KCG                                LE A+ +F+++ +++  SW 
Sbjct: 441 VDMYGKCG-------------------------------CLEMAKEVFEQIQRKNVVSWN 469

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI+GY         ++L+R M   E       TLSS+L A S    L+LGK IHGYI+R
Sbjct: 470 SMIAGYSLKGDSKSCIELFRRMDE-EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIR 528

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
              ++D  V S+L D+Y KCG+I  A  +F  M   +VVSW  MI  Y + G   E   +
Sbjct: 529 NRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVI 588

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F+++ K+G++P+A TF  VL AC+  A  E GK++H ++     +       AL+ MY+K
Sbjct: 589 FTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAK 648

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG V+ +  +FN +P  D VSWTS+IA Y  +G   +AL+ FE + +S  +PD + F+ +
Sbjct: 649 CGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAI 708

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-MK 426
           L+AC+HAGLVD+G  YF+ +  ++G     +HY+C++DLL R GR  EA +++ + P ++
Sbjct: 709 LSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIR 768

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            D  L ++L   C +H  LDL ++    L E +P++P+TY+ ++N+YAS 
Sbjct: 769 EDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASV 818



 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 234/437 (53%), Gaps = 39/437 (8%)

Query: 13  EALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           E L++ H++ H     P    Y S+++ C     +  GK VH+H+  SGF   V + +  
Sbjct: 280 EGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSA 339

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYAKC    DA  LFDEM ERDV S+N +IS + + G  E+A  LF+EM         
Sbjct: 340 VGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK-------- 391

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
             +SG+    +P                  +  TL++V+S+ + +  L  GKEIH  ++R
Sbjct: 392 --VSGF----KP------------------DSVTLTTVISSCARLLDLERGKEIHMELVR 427

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +GF  D  V SAL DMYGKCG +  A+++F+++  ++VVSW +MI  Y  +G  +    L
Sbjct: 428 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIEL 487

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  + + GIRP   T + +L AC+     +LGK +HGY+ R   +   F  S+L+ +Y K
Sbjct: 488 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK 547

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CGN+ +++ VF  MP+ ++VSW  +I+GY + G   +AL  F  + K+G +PD I F  V
Sbjct: 548 CGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSV 607

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L AC+   +++KG +  + I E   L         ++D+ A+ G   EA  + +++P + 
Sbjct: 608 LPACSQLAVLEKGKEIHNFIIESK-LEINEVVMGALLDMYAKCGAVDEALHIFNQLPER- 665

Query: 428 DKFLWASLLGGCRIHGN 444
           D   W S++     HG 
Sbjct: 666 DFVSWTSMIAAYGSHGQ 682



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 202/401 (50%), Gaps = 36/401 (8%)

Query: 41  ALEE--GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER-DVCSYNT 97
           ALEE  GK +H  + S G +  + +   L+++Y  C     A+ +F  ++   D+  +N 
Sbjct: 208 ALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNG 267

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +++  TK                  NF +             IE L+++  + +F     
Sbjct: 268 LMAACTK------------------NFIF-------------IEGLEVFHRLLHFPYLKP 296

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + FT  SVL A S +  +  GK +H +++++GF  D VV S+   MY KC    +A ++F
Sbjct: 297 DAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLF 356

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D+M +RDV SW  +I  Y+Q+G+ E+   LF E+  SG +P++ T   V+++CA     E
Sbjct: 357 DEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLE 416

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            GK++H  + R G+    F +SALV MY KCG +E +K+VF  + R ++VSW S+IAGY+
Sbjct: 417 RGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 476

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
             G     +E F  + + G +P       +L AC+ +  +  G ++ H    ++ +    
Sbjct: 477 LKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEADI 535

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              + ++DL  + G    AE+V   MP K +   W  ++ G
Sbjct: 536 FVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVVSWNVMISG 575


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 273/481 (56%), Gaps = 29/481 (6%)

Query: 4   ILCNQRRLKEALQILHQIS-------HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           I+ +  R  ++LQ L+  S       HP+ S +   I+ C     L  GK++H      G
Sbjct: 57  IIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFG 116

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
           +   +F+++ L+DMY+KCG ++DA+ LFDE+ ER+V S+ +MISG+ +     +A  LF 
Sbjct: 117 YGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFK 176

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           E    D   +  ++                           +   L  V+SA + +    
Sbjct: 177 EFLLVDETDYDEIVG---------------------VGVGVDSVLLGCVISACARVCVKS 215

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           + + +HG  ++ GF+    V + L D Y KCG I+ +R++FD M + DV SW ++I  Y 
Sbjct: 216 VTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYA 275

Query: 237 QEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
           Q G   E F+LFS+++K G +R NA T + VL ACA   A ++GK +H  + ++  +   
Sbjct: 276 QNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNL 335

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              +++V MY KCG VE ++K F+ + R ++ SWT ++AGY  +G   +A++ F  +++ 
Sbjct: 336 VVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRC 395

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +P++I FV VL AC+HAGL+ +G  +F+ +K +  +    +HY+C+VDLL R+G   E
Sbjct: 396 GIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKE 455

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  +I +M +KPD  +W SLLG CRIH N++L + +A  LF+++P N   YV ++NIYA 
Sbjct: 456 AYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYAD 515

Query: 476 A 476
           A
Sbjct: 516 A 516



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 14/236 (5%)

Query: 214 RQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           R +F K VD+  V SW ++I  + + G   +    FS + K  + PN  TF   + +C+ 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
                 GKQ+H      GY    F ASAL+ MYSKCG + +++K+F+ +P  ++VSWTS+
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 333 IAGYAQNGMPDKALEYF-ELLLKSGTQPDHI---------VFVG-VLTACTHAGLVDKGL 381
           I+GY QN    +A+  F E LL   T  D I         V +G V++AC     V    
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV-CVKSVT 217

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           +  H +  K G          ++D  A+ G    +  V   M  + D   W SL+ 
Sbjct: 218 ECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLIA 272


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 264/454 (58%), Gaps = 34/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQT 82
           P  ++YS L++ C +   +E+G+ VH+HL  S F    + + N +++MYAKCG + D   
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDD--- 141

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                       AR +FDEMP +D  +WTA+I+G+ + N+P +A
Sbjct: 142 ----------------------------ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDA 173

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L L+  M        N FTLSS+L A  +   L  G ++H + ++ G+ S   V SAL D
Sbjct: 174 LLLFPQMLRL-GFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVD 232

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY +CG ++ A+  FD M  +  VSW A+I  + ++G  E    L  ++ +   +P  FT
Sbjct: 233 MYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFT 292

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           ++ VL+ACA   A E GK VH +M + G    +F  + L+ MY+K G+++++K+VF+ + 
Sbjct: 293 YSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLV 352

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           +PD+VSW +++ G AQ+G+  + L+ FE +L+ G +P+ I F+ VLTAC+H+GL+D+GL 
Sbjct: 353 KPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLY 412

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF  +K K+ +     HY   VDLL R G    AE  I +MP++P   +W +LLG CR+H
Sbjct: 413 YFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++L   AAE  FE++P +    + ++NIYASA
Sbjct: 472 KNMELGVYAAERAFELDPHDSGPRMLLSNIYASA 505



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 159/331 (48%), Gaps = 37/331 (11%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R ++AL +  Q+      P+    SSL++       L+ G ++H+     G++  V++ +
Sbjct: 169 RPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMYA+CG++  AQ  FD M  +   S+N +ISG  + G  E A +L  +M QR NF 
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM-QRKNF- 286

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                       QP                    FT SSVLSA ++I  L  GK +H ++
Sbjct: 287 ------------QPTH------------------FTYSSVLSACASIGALEQGKWVHAHM 316

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +++G      + + L DMY K GSI++A+++FD++V  DVVSW  M+    Q G  +E  
Sbjct: 317 IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETL 376

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
             F ++++ GI PN  +F  VL AC+     + G      M +   +P        V + 
Sbjct: 377 DRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLL 436

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            + G ++ +++    MP  P    W +L+  
Sbjct: 437 GRVGLLDRAERFIREMPIEPTAAVWGALLGA 467



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
            +L+ +    PD+ ++  +L  CT  G V++G      + + H L         IV++ A
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           + G   +A  +  +MP K D   W +L+ G
Sbjct: 135 KCGCLDDARRMFDEMPTK-DMVTWTALIAG 163


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 263/470 (55%), Gaps = 37/470 (7%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL++  ++      P     +++I  C +   LE GK++H  L  SGF    F+S+ L
Sbjct: 189 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSAL 248

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY KCG                                LE A+ +F+++ +++  SW 
Sbjct: 249 VDMYGKCG-------------------------------CLEMAKEVFEQIQRKNVVSWN 277

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI+GY         ++L+R M   E       TLSS+L A S    L+LGK IHGYI+R
Sbjct: 278 SMIAGYSLKGDSKSCIELFRRMDE-EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIR 336

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
              ++D  V S+L D+Y KCG+I  A  +F  M   +VVSW  MI  Y + G   E   +
Sbjct: 337 NRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVI 396

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F+++ K+G++P+A TF  VL AC+  A  E GK++H ++     +       AL+ MY+K
Sbjct: 397 FTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAK 456

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG V+ +  +FN +P  D VSWTS+IA Y  +G   +AL+ FE + +S  +PD + F+ +
Sbjct: 457 CGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAI 516

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-MK 426
           L+AC+HAGLVD+G  YF+ +  ++G     +HY+C++DLL R GR  EA +++ + P ++
Sbjct: 517 LSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIR 576

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            D  L ++L   C +H  LDL ++    L E +P++P+TY+ ++N+YAS 
Sbjct: 577 EDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASV 626



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 234/437 (53%), Gaps = 39/437 (8%)

Query: 13  EALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           E L++ H++ H     P    Y S+++ C     +  GK VH+H+  SGF   V + +  
Sbjct: 88  EGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSA 147

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYAKC    DA  LFDEM ERDV S+N +IS + + G  E+A  LF+EM         
Sbjct: 148 VGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK-------- 199

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
             +SG+    +P                  +  TL++V+S+ + +  L  GKEIH  ++R
Sbjct: 200 --VSGF----KP------------------DSVTLTTVISSCARLLDLERGKEIHMELVR 235

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +GF  D  V SAL DMYGKCG +  A+++F+++  ++VVSW +MI  Y  +G  +    L
Sbjct: 236 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIEL 295

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  + + GIRP   T + +L AC+     +LGK +HGY+ R   +   F  S+L+ +Y K
Sbjct: 296 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK 355

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CGN+ +++ VF  MP+ ++VSW  +I+GY + G   +AL  F  + K+G +PD I F  V
Sbjct: 356 CGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSV 415

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L AC+   +++KG +  + I E   L         ++D+ A+ G   EA  + +++P + 
Sbjct: 416 LPACSQLAVLEKGKEIHNFIIESK-LEINEVVMGALLDMYAKCGAVDEALHIFNQLPER- 473

Query: 428 DKFLWASLLGGCRIHGN 444
           D   W S++     HG 
Sbjct: 474 DFVSWTSMIAAYGSHGQ 490



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 208/409 (50%), Gaps = 34/409 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE- 89
           SL++ C  ++ L++GK +H  + S G +  + +   L+++Y  C     A+ +F  ++  
Sbjct: 8   SLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP 67

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
            D+  +N +++  TK                  NF +             IE L+++  +
Sbjct: 68  LDITLWNGLMAACTK------------------NFIF-------------IEGLEVFHRL 96

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
            +F     + FT  SVL A S +  +  GK +H +++++GF  D VV S+   MY KC  
Sbjct: 97  LHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV 156

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
             +A ++FD+M +RDV SW  +I  Y+Q+G+ E+   LF E+  SG +P++ T   V+++
Sbjct: 157 FEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISS 216

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA     E GK++H  + R G+    F +SALV MY KCG +E +K+VF  + R ++VSW
Sbjct: 217 CARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSW 276

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            S+IAGY+  G     +E F  + + G +P       +L AC+ +  +  G ++ H    
Sbjct: 277 NSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYII 335

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           ++ +       + ++DL  + G    AE+V   MP K +   W  ++ G
Sbjct: 336 RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVVSWNVMISG 383


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 265/466 (56%), Gaps = 6/466 (1%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q++ +   P    + S+++ C + + L+ G +VH  + S      +F+ N L+ MY +CG
Sbjct: 170 QMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCG 229

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMIS 131
            +  A+ LFD M ERD  S+N+MIS ++  G   +A  LF+ M  +    +  +W  +  
Sbjct: 230 EVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAG 289

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           G +R     +AL L   M+NF   + +   +   L A S I  +RLGKEIHG+ +R    
Sbjct: 290 GCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIG-LGACSHIGAIRLGKEIHGFTIRHYHH 348

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
               V +AL  MY +C  I  A  +F    D+  ++W +M+      GR EE   LF EL
Sbjct: 349 MLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFREL 408

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGN 310
           +  G+ P+  TFA +L  CA  A  + G++ H Y+T+   +  +    +ALV MY++ G 
Sbjct: 409 LLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGK 468

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           V  +K++F  + + D V++TSLIAGY   G   KA+  FE + +   +PDHI  + VL+A
Sbjct: 469 VSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSA 528

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H+GLV++    F  ++  HGL+   +HYAC+ DL  R G  ++A+++I++MP +P   
Sbjct: 529 CSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSA 588

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +WA+L+G C IHGN+D+ + AAE L E+ PE+   YV +AN+YA+A
Sbjct: 589 IWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAA 634



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 212/486 (43%), Gaps = 80/486 (16%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S L+  C ++ +L  GK++H H+ SSG     F+ + L+  Y+    + +A TL +    
Sbjct: 83  SILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNL 142

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
              CS+N +I+ + K    E A             ++  M+S  VR              
Sbjct: 143 FRPCSWNILITSYVKHKLYEAAI-----------LAYKQMVSKGVR-------------- 177

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   + FT  S+L A    Q L+ G E+H  I          V +AL  MYG+CG 
Sbjct: 178 -------PDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGE 230

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV--- 266
           ++ AR +FD M++RD VSW +MI  Y   G   E F LF  +    +  N  T+  +   
Sbjct: 231 VDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGG 290

Query: 267 --------------------------------LNACADHAAEELGKQVHGYMTRIGYDPY 294
                                           L AC+   A  LGK++HG+  R  +   
Sbjct: 291 CLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHML 350

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           S   +ALV MY++C ++ ++  +F        ++W S+++G    G  ++AL  F  LL 
Sbjct: 351 STVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLL 410

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH---YACIVDLLARSG 411
            G +PD++ F  +L  C     +  G + FH    KH      DH   +  +VD+ AR+G
Sbjct: 411 FGVEPDYVTFASILPLCARVADLQHGRE-FHCYITKH--RDFRDHLLLWNALVDMYARAG 467

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL--FEIEPENPATYVTM 469
           +  EA+ +   +  K D+  + SL+ G  + G    A R  E +  F+I+P+    ++TM
Sbjct: 468 KVSEAKRIFYSLS-KKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPD----HITM 522

Query: 470 ANIYAS 475
             + ++
Sbjct: 523 IAVLSA 528



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 163/383 (42%), Gaps = 58/383 (15%)

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           + ++  EA  L ++  ++ +S      ++S +L + +    L  GK++HG+I+ +G   D
Sbjct: 54  QLSKSFEAFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVED 113

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             + S L   Y     + EA  + +        SW  +I  Y +    E     + +++ 
Sbjct: 114 SFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVS 173

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVE 312
            G+RP+ FTF  +L AC +    + G +VH  +      P+S F  +AL+ MY +CG V+
Sbjct: 174 KGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWS-TPWSLFVHNALISMYGRCGEVD 232

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE---------------------- 350
            ++ +F+ M   D VSW S+I+ Y+  GM  +A E FE                      
Sbjct: 233 TARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCL 292

Query: 351 --------LLLKS-----GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
                   L L S     G   D +  +  L AC+H G +  G       KE HG T   
Sbjct: 293 RVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLG-------KEIHGFTIRH 345

Query: 398 DHYA------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD--LAK 449
            H+        +V + AR      A  ++ ++     +  W S+L G    G ++  L  
Sbjct: 346 YHHMLSTVQNALVTMYARCKDIRHAY-MLFRLNDDKSRITWNSMLSGLTHLGRVEEALCL 404

Query: 450 RAAEALFEIEPENPATYVTMANI 472
                LF +EP+    YVT A+I
Sbjct: 405 FRELLLFGVEPD----YVTFASI 423


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 263/461 (57%), Gaps = 21/461 (4%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD--- 79
           +P  +++ S+++ C     L  G+ +H ++   G    ++  N L++MY+K   + +   
Sbjct: 103 YPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGR 162

Query: 80  ----AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
               A  +FDEM ER        +       S +  R +F+ MP++D  SW  +I+G  R
Sbjct: 163 QRLGAGEVFDEMTERTRSVRTVSVL------SEDSVRKIFEMMPEKDLVSWNTIIAGNAR 216

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                E L + R M    N   + FTLSSVL  ++    +  GKEIHG  +R G D+D  
Sbjct: 217 NGLYEETLRMIREMGG-ANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIY 275

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V S+L DMY KC  + ++ ++F  + +RD +SW ++I    Q G  +EG   F +++ + 
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK 335

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           I+P +++F+ ++ ACA      LGKQ+HGY+TR G+D   F AS+LV MY+KCGN+  +K
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           ++F+ M   D+VSWT++I G A +G    A+E FE +   G +        VLTAC+H G
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGG 448

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LVD+  +YF+S+    G+    +HYA + DLL R+GR  EA D I  M + P   +WA+L
Sbjct: 449 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATL 508

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           L  CR+H N+D+A++ A  + E++P N   Y+ +ANIY++A
Sbjct: 509 LSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAA 549



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 186/394 (47%), Gaps = 40/394 (10%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVL 166
           L  +  LF+ +      +W ++I  Y  +  P ++L  +  M+ +      N F   SVL
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF--PSVL 113

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA------------- 213
            + + +  L LG+ +HGYI+R G D D    +AL +MY K   + E+             
Sbjct: 114 KSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDE 173

Query: 214 -------------------RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                              R+IF+ M ++D+VSW  +I    + G  EE   +  E+  +
Sbjct: 174 MTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGA 233

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
            ++P++FT + VL   A++     GK++HG   R G D   + AS+L+ MY+KC  V +S
Sbjct: 234 NLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADS 293

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            +VF  +   D +SW S+IAG  QNG+ D+ L +F  +L +  +P    F  ++ AC H 
Sbjct: 294 CRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHL 353

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             +  G Q  H    ++G        + +VD+ A+ G    A+ +  +M ++ D   W +
Sbjct: 354 TTLHLGKQ-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTA 411

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           ++ GC +HG    A  A E   ++E E     +T
Sbjct: 412 MIMGCALHGQ---APDAIELFEQMETEGIKAVLT 442



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 126/282 (44%), Gaps = 38/282 (13%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y     ++++ ++F+ +     ++W ++I  Y   G   +    F  ++ SG+ P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS-------- 314
           F  VL +CA      LG+ +HGY+ R+G D   +  +AL++MYSK   +E S        
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 315 ------------------------KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                                   +K+F  MP  DLVSW ++IAG A+NG+ ++ L    
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLA 408
            +  +  +PD      VL        + +G +  H    + GL   AD Y  + ++D+ A
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRG-KEIHGCSIRQGL--DADIYVASSLIDMYA 285

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +  R  ++  V + +  + D   W S++ GC  +G  D   R
Sbjct: 286 KCTRVADSCRVFTLLTER-DGISWNSIIAGCVQNGLFDEGLR 326



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L     P    +SS++  C     L  GK++H ++  +GF   +FI++ L+DMYAKCG
Sbjct: 330 QMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCG 389

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           NI  A+ +FD M+ RD+ S+  MI G    G    A  LF++M
Sbjct: 390 NIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 285/508 (56%), Gaps = 40/508 (7%)

Query: 6   CNQRRLKEALQILHQIS-HP------SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK 58
           CN R  KEA+ +   +S +P         + ++++  C    AL+ GK++H+ +     +
Sbjct: 147 CNGRP-KEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVE 205

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
               + + L+++Y KCG+I  A  + + M+E D  S + +ISG+   G +  AR +F   
Sbjct: 206 FDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLK 265

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
                  W +MISGYV  N+ +EAL+L+  M+  +    +  T +SVLSA S +  +  G
Sbjct: 266 SNXCVVLWNSMISGYVANNEALEALELFNNMRR-KGVQEDYSTFASVLSACSTLGIIDQG 324

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKC------------------------------- 207
            ++H ++ + GF +D ++ SAL DMY KC                               
Sbjct: 325 IQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNC 384

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G I++ARQIFD M  + ++SW +MI  + Q     E   LF E+ K G+R + F+ AGV+
Sbjct: 385 GRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVI 444

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +ACA  ++ ELG+Q+    T IG +     +++LV  Y KCG VE+ +K+F+ M + D V
Sbjct: 445 SACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEV 504

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            W S++ GYA NG   +AL  F+ +   G QP  I FVGVL+AC H GLV++G ++F+++
Sbjct: 505 PWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAM 564

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K  + +    +HY+C+VDL AR+G   +A ++I +MP+K D  +W+S+L GC  HGN  L
Sbjct: 565 KLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNIL 624

Query: 448 AKRAAEALFEIEPENPATYVTMANIYAS 475
            K+ A+ + +++PEN   YV ++ IYA+
Sbjct: 625 GKKVAKRIIDLDPENSGAYVQLSGIYAT 652



 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 242/456 (53%), Gaps = 44/456 (9%)

Query: 23   HPSPSIYSSLIQF----CRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNI 77
             PS   YS+L+ F    CR       GK++H+ +  +G     V + N L+ MY K G +
Sbjct: 839  RPSGFTYSTLLSFVSSACR-------GKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVV 891

Query: 78   SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
              A  +F  M+E D+ S+N++I                          W+   SGY    
Sbjct: 892  DYAFGVFITMEELDIISWNSLI--------------------------WSCGKSGYQNL- 924

Query: 138  QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
                AL  + +M++   S  ++FT+S+V++  S +Q L  G++I    +R GF S+ +V 
Sbjct: 925  ----ALRQFVLMRSVGYS-PDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVS 979

Query: 198  SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
            SA  D++ KC  + ++ ++F+++   D V   AMI  Y   G  E    LF   ++  +R
Sbjct: 980  SASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLR 1039

Query: 258  PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
            P  FT + VL+A +     + G Q+H  + + G +     AS+LV MY+K G ++++ K 
Sbjct: 1040 PTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKT 1099

Query: 318  FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
            F  +   DL+SW ++I G A NG   KALE F+ LL  G  PD I   GVL AC   GLV
Sbjct: 1100 FAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLV 1159

Query: 378  DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            D+GL  F S+++++G+    +HYACIVD+++R G+  EA D++  MP +P   +W SLL 
Sbjct: 1160 DEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLC 1219

Query: 438  GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
             C I+G+L   +R AE + E+EP++   Y+ +A  Y
Sbjct: 1220 ACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAY 1255



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 229/505 (45%), Gaps = 98/505 (19%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVF-ISNCLLDMYAKCGNISDAQTLFDEMQERDVCS 94
           C    ++  G+ +H     SG    V  I N LL MY++C ++ +AQ LF+EM +R+  S
Sbjct: 16  CNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFS 75

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR----------YNQ------ 138
           +NTMI G+ K GS  ++  LFD MP +D FSW  +ISG+ +          +N+      
Sbjct: 76  WNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNG 135

Query: 139 ---------------PIEALDLYR--MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                          P EA+ L++   +   E    + F L++V+ A + +  L  GK+I
Sbjct: 136 IAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQI 195

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSI------------------------------- 210
           H  I+    + D V+ S+L ++YGKCG I                               
Sbjct: 196 HARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRM 255

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           N+AR+IF    +  VV W +MI  Y       E   LF+ + + G++ +  TFA VL+AC
Sbjct: 256 NDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSAC 315

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK----------------------- 307
           +     + G QVH ++ ++G+       SALV MYSK                       
Sbjct: 316 STLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLN 375

Query: 308 --------CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
                   CG +++++++F+ MP   L+SW S+I G++QN  P +AL+ F  + K G + 
Sbjct: 376 SMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRM 435

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D     GV++AC     ++ G Q F       GL +       +VD   + G       +
Sbjct: 436 DKFSLAGVISACASISSLELGEQIFAR-ATIIGLEFDQIISTSLVDFYCKCGLVEHGRKL 494

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGN 444
             +M MK D+  W S+L G   +G+
Sbjct: 495 FDRM-MKSDEVPWNSMLMGYATNGH 518



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 221/418 (52%), Gaps = 9/418 (2%)

Query: 56   GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
            GF    F+ N  LD+Y++ G  +D+  +F+++ ++++ S+N  +  F + G LE+AR++F
Sbjct: 740  GFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVF 799

Query: 116  DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
            DEMP+RD  SW  MISGYV +    +A   +  MQ      S  FT S++LS VS+  C 
Sbjct: 800  DEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSG-FTYSTLLSFVSS-AC- 856

Query: 176  RLGKEIHGYIMRTGFD-SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
              GK+IH  ++R G D S+ VV ++L  MYGK G ++ A  +F  M + D++SW ++I  
Sbjct: 857  -RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWS 915

Query: 235  YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
              + G +      F  +   G  P+ FT + V+  C++    E G+Q+     R+G+   
Sbjct: 916  CGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSN 975

Query: 295  SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            S  +SA + ++SKC  +E+S +VF  + + D V   ++I+ YA +G  + AL+ F L L+
Sbjct: 976  SIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLR 1035

Query: 355  SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
               +P       VL+A +    VD+G Q  HS+  K GL       + +V++ A+ G   
Sbjct: 1036 ENLRPTEFTLSIVLSAVSILLPVDQGSQ-IHSLVVKSGLESDVIVASSLVEMYAKFGLID 1094

Query: 415  EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
             A    +K+  + D   W +++ G   +G +  A    + L    P  P   +T+A +
Sbjct: 1095 SAMKTFAKIGAR-DLISWNTMIMGLAYNGRVSKALEIFKELLIGGP--PPDEITLAGV 1149



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 216/500 (43%), Gaps = 87/500 (17%)

Query: 13   EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLK-SSGFKPGVFISNCL 67
            EAL +  Q+      P+   +  ++  C     +EEG+K    +K      PG+   +C+
Sbjct: 521  EALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCM 580

Query: 68   LDMYAKCGNISDAQTLFDEMQER-DVCSYNTMISGFTKGGS----LEQARNLFDEMPQRD 122
            +D+YA+ G + DA  L ++M  + D   +++++ G    G+     + A+ + D  P+  
Sbjct: 581  VDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENS 640

Query: 123  NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT---------LSSVLSAVSAIQ 173
              ++  +   Y  +     +  + ++M + +      F          LSS    V+ ++
Sbjct: 641  G-AYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKDTSFDIAGEEGXEGLSSETKEVTKMK 699

Query: 174  -----CLRLGKEIH--------------------GYIMRTGFDSDEVVWSALSDMYGKCG 208
                  LRL  E                        +++ GF++   + +   D+Y + G
Sbjct: 700  QRQNLVLRLVAEKKRECDERDQKFMAARRTLLEFDMLIKVGFNTHTFLGNRCLDLYSQLG 759

Query: 209  SINEARQIFDKMVDR-------------------------------DVVSWTAMIGRYFQ 237
            + N++ ++F+ ++D+                               DVVSW  MI  Y  
Sbjct: 760  TGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVS 819

Query: 238  EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS-F 296
             G  ++ F  FSE+ K+GIRP+ FT++ +L+  +       GKQ+H  M R G D  +  
Sbjct: 820  FGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACR---GKQIHASMIRNGVDLSNVV 876

Query: 297  AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
              ++L+ MY K G V+ +  VF  M   D++SW SLI    ++G  + AL  F L+   G
Sbjct: 877  VGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVG 936

Query: 357  TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
              PD      V+T C++   ++KG Q F ++  + G    +   +  +DL ++  R  ++
Sbjct: 937  YSPDQFTVSTVITVCSNLQDLEKGEQIF-ALCIRVGFLSNSIVSSASIDLFSKCNRLEDS 995

Query: 417  EDVISKMPMKPDKFLWASLL 436
              V  ++      + W S+L
Sbjct: 996  VRVFEEI------YQWDSVL 1009



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 20/198 (10%)

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNG 320
           + A  L +C ++ +   G+ +H    + G      +  + L+ MYS+C ++  ++++F  
Sbjct: 8   SLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           MP+ +  SW ++I GY ++G   K+LE F+    S    D   +  V++     G ++  
Sbjct: 68  MPKRNCFSWNTMIEGYLKSGSKGKSLELFD----SMPHKDAFSWNVVISGFAKEGNLEVA 123

Query: 381 LQYFHSIKEKHGLTYTA--DHYACIVDLLARSGRFHEAEDVISKMPMKP------DKFLW 432
            + F+ +  K+G+ + +    YAC       +GR  EA  +   + + P      D F+ 
Sbjct: 124 RRLFNEMPWKNGIAWNSMIHGYAC-------NGRPKEAVGLFKDLSLNPLERFCGDTFVL 176

Query: 433 ASLLGGCRIHGNLDLAKR 450
           A+++G C   G LD  K+
Sbjct: 177 ATVVGACTNLGALDCGKQ 194


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/469 (35%), Positives = 263/469 (56%), Gaps = 35/469 (7%)

Query: 12  KEALQILHQIS-HPSPSIYSSLIQFCRQ--NRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +EA+++   ++  P    +S+++  C     RALE GK++H+H+K    KP VF+ + L+
Sbjct: 150 REAIKLYKAMAIDPDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALV 209

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            M+AKCG                               SL+++R +FD+   +D   W +
Sbjct: 210 TMFAKCG-------------------------------SLKESREVFDDCRWKDVLFWNS 238

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           MI  Y +   P EA++L++ M +    V  N  T ++VL+A SA++ L  GKE+H  ++ 
Sbjct: 239 MIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVD 298

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF  D    ++L +MY KCGSI EAR++FD M  R VVSWT +I  Y ++G   E   L
Sbjct: 299 AGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDL 358

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           + ++   G+ PN  TFA VL+AC+   A E GK VH  M   GY P    A+ALV +Y K
Sbjct: 359 YRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGK 418

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+V++++KVF+ M   ++VSWT++I+ YA +   ++A++ ++ +   G Q    ++  V
Sbjct: 419 CGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTV 478

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTAC+ AGL++    YF  +    G     + Y C+  +L R+GR  EAE++++ MP + 
Sbjct: 479 LTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEA 538

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +   W  LL  C+ H +++   R AE LF +EP N A YV ++NIY +A
Sbjct: 539 EFVAWMGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAA 587



 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 134/422 (31%), Positives = 223/422 (52%), Gaps = 45/422 (10%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           HQ    +P+ Y +L++ C +   L  GKK+H H+  +G+   V++ N L+ MY+KCG++ 
Sbjct: 64  HQQEDCAPA-YGNLLRDCGE---LAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLE 119

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           DA+ +FD M+ RD  S++ MI+G+ + G   +A  L+  M                    
Sbjct: 120 DAKKVFDGMRRRDSISWSKMIAGYVRHGLAREAIKLYKAM-------------------- 159

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI--QCLRLGKEIHGYIMRTGFDSDEVV 196
              A+D             + FT S+VL+A S++  + L +GKEIH ++ R     D  V
Sbjct: 160 ---AID------------PDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFV 204

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG- 255
            SAL  M+ KCGS+ E+R++FD    +DV+ W +MI  Y Q G   E   LF  +  S  
Sbjct: 205 DSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSP 264

Query: 256 -IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
            + PNA T+  VL AC+     E GK+VH  M   G+   + A ++LV+MY+KCG++  +
Sbjct: 265 PVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEA 324

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           ++VF+GM +  +VSWT +I+ Y + G P +AL+ +  +   G +P+ I F  VL+AC+  
Sbjct: 325 REVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSL 384

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G +++G +  H+  +  G          +V L  + G    A  V  +M ++ +   W +
Sbjct: 385 GALEEG-KAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIR-NVVSWTA 442

Query: 435 LL 436
           ++
Sbjct: 443 MI 444



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 15/216 (6%)

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           A  +  +L  C + AA   GK++H ++ + GY    +  + LV MYSKCG++E++KKVF+
Sbjct: 70  APAYGNLLRDCGELAA---GKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFD 126

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG--LV 377
           GM R D +SW+ +IAGY ++G+  +A++ ++ +      PD   F  VL AC+  G   +
Sbjct: 127 GMRRRDSISWSKMIAGYVRHGLAREAIKLYKAM---AIDPDGFTFSAVLNACSSLGPRAL 183

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           + G +  H+  ++  L       + +V + A+ G   E+ +V      K D   W S++ 
Sbjct: 184 EVGKE-IHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWK-DVLFWNSMIV 241

Query: 438 GCRIHGN----LDLAKRAAEALFEIEPENPATYVTM 469
                G+    ++L K    +   +EP N  TY T+
Sbjct: 242 AYSQSGHPREAIELFKSMGSSSPPVEP-NAITYTTV 276


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 270/468 (57%), Gaps = 36/468 (7%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L E+ +I  Q+      P+   Y S+++ C    AL+ G+++H+ +  +GF+  V++ + 
Sbjct: 396 LSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSV 455

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAK                                G L+ A  +   + + D  SW
Sbjct: 456 LIDMYAK-------------------------------HGKLDTAHVILRTLTEDDVVSW 484

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TA+ISGY ++N   EAL  ++ M N     S+    SS +SA + IQ L  G++IH    
Sbjct: 485 TALISGYAQHNLFAEALKHFKEMLN-RGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY 543

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +G+  D  + +AL  +Y +CG I EA   F+K+  +D +SW  +I  + Q G  E+   
Sbjct: 544 VSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALK 603

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F+++ ++ +  + FTF   ++A A+ A  + GKQ+H  + + G+D     ++AL+  Y+
Sbjct: 604 VFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYA 663

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E++++ F  MP  + VSW ++I GY+Q+G  ++A+  FE + + G  P+H+ FVG
Sbjct: 664 KCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVG 723

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLV KGL YF S+ ++HGL     HYAC+VDL++R+G    A   I +MP++
Sbjct: 724 VLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIE 783

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           PD  +W +LL  C +H N+++ + AA+ L E+EPE+ ATYV ++N+YA
Sbjct: 784 PDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYA 831



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 212/421 (50%), Gaps = 46/421 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P ++SS++  C + +  + G+++H+ +   G     ++ N L+ +Y++  N   A+ +
Sbjct: 211 PTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKV 270

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +MQ +D  S+N++ISG  + G  + A  LF +M +RD             Y +P    
Sbjct: 271 FSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM-KRD-------------YLKP---- 312

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         +  T++S+LSA ++   L  G+++H Y+++ G  SD +V  AL D+
Sbjct: 313 --------------DCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDL 358

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y  C  I  A ++F      +VV W  M+  + +     E F +F ++   G+ PN FT+
Sbjct: 359 YVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTY 418

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C    A +LG+Q+H  + + G+    +  S L+ MY+K G ++ +  +   +  
Sbjct: 419 PSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTE 478

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWT+LI+GYAQ+ +  +AL++F+ +L  G Q D+I F   ++AC        G+Q 
Sbjct: 479 DDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACA-------GIQA 531

Query: 384 FHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +  ++ H  +Y + +         +V L AR GR  EA     K+  K D   W  L+ 
Sbjct: 532 LNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLIS 590

Query: 438 G 438
           G
Sbjct: 591 G 591



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 206/457 (45%), Gaps = 68/457 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L+  C  + +L E KK+H  +   GF     + N L+D+Y   G+            
Sbjct: 13  YIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD------------ 60

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                              L+    +F++MP R   SW  +ISG++        LDL+  
Sbjct: 61  -------------------LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSC 101

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQC-LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M   EN    + + +SVL A S  +  +R  ++IH  I+  G     ++ + L  +Y K 
Sbjct: 102 MIE-ENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKN 160

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G I  AR++FD +  +D VSW AMI  + Q G  EE   LF E+  +GI P  + F+ VL
Sbjct: 161 GLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVL 220

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           + C      ++G+Q+H  + + G    ++  +ALV +YS+  N  +++KVF+ M   D V
Sbjct: 221 SGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEV 280

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS- 386
           S+ SLI+G AQ G  D ALE F  + +   +PD +    +L+AC   G + KG Q  HS 
Sbjct: 281 SFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ-LHSY 339

Query: 387 -------------------------IKEKHGLTYTADH-----YACIVDLLARSGRFHEA 416
                                    IK  H +  TA       +  ++    +     E+
Sbjct: 340 VIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSES 399

Query: 417 EDVISKMPMK---PDKFLWASLLGGCRIHGNLDLAKR 450
             +  +M +K   P++F + S+L  C   G LDL ++
Sbjct: 400 FRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ 436



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI  N  T+  +L+ C +  +    K++HG + ++G+   S   + LV +Y   G+++  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            KVF  MP   + SW  +I+G+ +  M ++ L+ F  +++    P  I F  VL AC+  
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGH 124

Query: 375 GLVDKGLQYFHSIKEK---HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
            +   G++Y   I  +   HGL  +      ++ L A++G    A  V   +  K D   
Sbjct: 125 RI---GIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTK-DSVS 180

Query: 432 WASLLGG 438
           W +++ G
Sbjct: 181 WVAMISG 187


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 263/456 (57%), Gaps = 34/456 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     S +I  C     L  G+++HS     G      +  CL++MYAKC         
Sbjct: 269 PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC--------- 319

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR---YNQPI 140
                              +  GS+  AR +FD++   + FSWTAMI+GYV+   Y++  
Sbjct: 320 -------------------SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDE-- 358

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           EALDL+R M    + + N FT SS L A + +  LR+G+++  + ++ GF S   V ++L
Sbjct: 359 EALDLFRGMI-LTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MY + G I++AR+ FD + +++++S+  +I  Y +    EE   LF+E+   G+  +A
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           FTFA +L+  A       G+Q+H  + + G        +AL+ MYS+CGN+E++ +VF  
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   +++SWTS+I G+A++G   +ALE F  +L+ G +P+ + ++ VL+AC+H GLV++G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            ++F S+  +HG+    +HYAC+VD+L RSG   EA   I+ MP K D  +W + LG CR
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACR 657

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +HGNL+L K AA+ + E EP +PA Y+ ++N+YAS 
Sbjct: 658 VHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYAST 693



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 207/423 (48%), Gaps = 48/423 (11%)

Query: 7   NQRRLKEALQIL----HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N  RL +A+  L    HQ SHP    YS  ++ C + R+ + G  VH  L  S       
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL----- 97

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM-PQR 121
                                     + D  + N++IS ++K G  E+A ++F  M   R
Sbjct: 98  --------------------------QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSR 131

Query: 122 DNFSWTAMISGYVRYNQPIEAL-DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           D  SW+AM+S +   N    AL     M++N      N++  ++   A S  + + +G  
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIEN--GYYPNEYCFAAATRACSTAEFVSVGDS 189

Query: 181 IHGYIMRTGF-DSDEVVWSALSDMYGKC-GSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           I G++++TG+  SD  V   L DM+ K  G +  A ++F+KM +R+ V+WT MI R  Q 
Sbjct: 190 IFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G   E   LF E+I SG  P+ FT +GV++ACA+     LG+Q+H    R G        
Sbjct: 250 GYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 299 SALVHMYSKC---GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD-KALEYFELLLK 354
             L++MY+KC   G++  ++K+F+ +   ++ SWT++I GY Q G  D +AL+ F  ++ 
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYF-HSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +   P+H  F   L AC +   +  G Q F H++K   G +        ++ + ARSGR 
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL--GFSSVNCVANSLISMYARSGRI 427

Query: 414 HEA 416
            +A
Sbjct: 428 DDA 430



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 108/250 (43%), Gaps = 38/250 (15%)

Query: 1   AIDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
            ID        +EAL++ ++I       S   ++SL+        + +G+++H+ +  SG
Sbjct: 448 VIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSG 507

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
            K    + N L+ MY++CGNI  A  +F++M++R+V S+ ++I+GF K G   QA  LF 
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +M +                                E    N  T  +VLSA S +  + 
Sbjct: 568 KMLE--------------------------------EGVRPNLVTYIAVLSACSHVGLVN 595

Query: 177 LG-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGR 234
            G K         G       ++ + D+ G+ GS++EA Q  + M  + D + W   +G 
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655

Query: 235 YFQEGRREEG 244
               G  E G
Sbjct: 656 CRVHGNLELG 665


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 266/454 (58%), Gaps = 30/454 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     S ++  C +   L  G++ H  +  SG    V +   L+DMYAKC  ++D    
Sbjct: 143 PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKC--VAD---- 196

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ-PIEA 142
                                 GS++ AR +FD MP  +  SWTA+I+GYV+      EA
Sbjct: 197 ----------------------GSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREA 234

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           ++L+  M   +    N FT SSVL A + +  + LG++++  +++    S   V ++L  
Sbjct: 235 IELFLEMVQGQVK-PNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLIS 293

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY +CG++  AR+ FD + ++++VS+  ++  Y +    EE F LF+E+  +G   NAFT
Sbjct: 294 MYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFT 353

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           FA +L+  +   A   G+Q+H  + + G+       +AL+ MYS+CGN+E + +VFN M 
Sbjct: 354 FASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG 413

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +++SWTS+I G+A++G   +ALE F  +L++G  P+ + ++ VL+AC+H GL+ +GL+
Sbjct: 414 DGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLK 473

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +F S+K +HG+    +HYAC+VDLL RSG   EA ++++ MP K D  +  + LG CR+H
Sbjct: 474 HFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVH 533

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           GN+DL K AAE + E +P +PA Y+ ++N++ASA
Sbjct: 534 GNMDLGKHAAEMILEQDPHDPAAYILLSNLHASA 567



 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 237/459 (51%), Gaps = 28/459 (6%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN---ISDAQTLFD 85
           +S+LI     N    E       +   GF P  +   C   ++  C N   IS  + +F 
Sbjct: 10  WSALISCYANNEKAFEAISAFFDMLECGFYPNEY---CFTGVFRACSNKENISLGKIIFG 66

Query: 86  EMQ-----ERDVCSYNTMISGFTKG-GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
            +      E DVC    +I  F KG G LE A  +FD MP R+  +WT MI+ + +    
Sbjct: 67  FLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFS 126

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            +A+DL+  M      V ++FTLS V+SA + +  L LG++ H  +M++G D D  V  +
Sbjct: 127 RDAVDLFLDMV-LSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 200 LSDMYGKC---GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE-EGFALFSELIKSG 255
           L DMY KC   GS+++AR++FD+M   +V+SWTA+I  Y Q G  + E   LF E+++  
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           ++PN FTF+ VL ACA+ +   LG+QV+  + ++     +   ++L+ MYS+CGN+EN++
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENAR 305

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           K F+ +   +LVS+ +++  YA++   ++A E F  +  +GT  +   F  +L+  +  G
Sbjct: 306 KAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIG 365

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            + KG Q  HS   K G          ++ + +R G    A  V ++M    +   W S+
Sbjct: 366 AIGKGEQ-IHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSM 423

Query: 436 LGGCRIHGNLDLAKRAAEALFE-----IEPENPATYVTM 469
           + G   HG    A RA E   +     + P N  TY+ +
Sbjct: 424 ITGFAKHG---FATRALETFHKMLEAGVSP-NEVTYIAV 458



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 193/364 (53%), Gaps = 45/364 (12%)

Query: 120 QRDNFSWTAMISGYVRYNQPIEALD-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           +RD  SW+A+IS Y    +  EA+   + M++       N++  + V  A S  + + LG
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLEC--GFYPNEYCFTGVFRACSNKENISLG 61

Query: 179 KEIHGYIMRTG-FDSDEVVWSALSDMYGKC-GSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           K I G++++TG F+SD  V  AL DM+ K  G +  A ++FD+M DR+VV+WT MI R+ 
Sbjct: 62  KIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           Q G   +   LF +++ SG  P+ FT +GV++ACA+     LG+Q H  + + G D    
Sbjct: 122 QLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC 181

Query: 297 AASALVHMYSKC---GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK-ALEYFELL 352
              +LV MY+KC   G+V++++KVF+ MP  +++SWT++I GY Q+G  D+ A+E F  +
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM 241

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           ++   +P+H  F  VL AC +   +  G Q                 YA +V        
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLGEQV----------------YALVV-------- 277

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
                    KM +     +  SL+      GN++ A++A + LFE   +N  +Y T+ N 
Sbjct: 278 ---------KMRLASINCVGNSLISMYSRCGNMENARKAFDVLFE---KNLVSYNTIVNA 325

Query: 473 YASA 476
           YA +
Sbjct: 326 YAKS 329



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 152/371 (40%), Gaps = 56/371 (15%)

Query: 12  KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA ++ ++I      +    ++SL+       A+ +G+++HS +  SGFK  + I N L
Sbjct: 333 EEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNAL 392

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DN 123
           + MY++CGNI  A  +F+EM + +V S+ +MI+GF K G   +A   F +M +     + 
Sbjct: 393 ISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNE 452

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQ-----------------------------NFEN 154
            ++ A++S         E L  ++ M+                                N
Sbjct: 453 VTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVN 512

Query: 155 SV---SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
           S+   ++   L + L A      + LGK     I+      D   +  LS+++   G   
Sbjct: 513 SMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQD-PHDPAAYILLSNLHASAGQWE 571

Query: 212 EARQIFDKMVDRDVV-----SWTAMIGR----YFQEGRREEGFALFSELIKSGIRPNAFT 262
           E  +I  KM +R++      SW  +  +    Y  +    +   ++ EL +  ++     
Sbjct: 572 EVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELG 631

Query: 263 FAGVLNACADHAAEELGKQV---HGYMTRIGYDPYSFAASALVHMYSK---CGNVENSKK 316
           +    +       EE  +Q    H     + Y   S + S  + ++     CG+   + K
Sbjct: 632 YIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFK 691

Query: 317 VFNGMPRPDLV 327
            F+ + R ++V
Sbjct: 692 YFSIVRRKEIV 702


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/450 (37%), Positives = 259/450 (57%), Gaps = 34/450 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+ L+  C   RA+ EG++VH+H+  + + P V++S  L+ +Y KC              
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCE------------- 59

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                              L  AR++FDEM +R+  SWTAMISGY +     EAL L+  
Sbjct: 60  ------------------CLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQ 101

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M    ++  N+FT ++VLS+ +      LG++IH +I +  +++   V S+L DMY K G
Sbjct: 102 MLR-SDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAG 160

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I+EAR +F+ + +RDVVS TA+I  Y Q G  EE   LF  L + G+  N  T+A +L 
Sbjct: 161 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLT 220

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A +  AA + GKQVH ++ R     Y    ++L+ MYSKCGN+  ++K+FN MP   ++S
Sbjct: 221 ALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVIS 280

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           W +++ GY+++G   + ++ F+L+ +    +PD + F+ VL+ C+H GL DKGL+ F  +
Sbjct: 281 WNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEM 340

Query: 388 KE-KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
                 +    +HY C++DLL R+GR  EA ++I KMP +P   +W SLLG CR+H N +
Sbjct: 341 MNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTN 400

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           + +     L EIEPEN   YV ++N+YASA
Sbjct: 401 IGEFVGCRLLEIEPENAGNYVILSNLYASA 430



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 164/325 (50%), Gaps = 36/325 (11%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +Q+L   + P+   +++++  C      E G+++HSH+    ++  +F+ + LLDMYAK 
Sbjct: 100 VQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKA 159

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G I +A+ +F+ + ERDV S   +ISG+ + G  E+A  LF  + QR+  S         
Sbjct: 160 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRL-QREGMS--------- 209

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                                 SN  T +S+L+A+S +  L  GK++H +++R       
Sbjct: 210 ----------------------SNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYV 247

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           V+ ++L DMY KCG++N AR+IF+ M  R V+SW AM+  Y + G+  E   LF  + + 
Sbjct: 248 VLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREE 307

Query: 255 G-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA--SALVHMYSKCGNV 311
             ++P++ TF  VL+ C+    E+ G ++   M   G +  +       ++ +  + G V
Sbjct: 308 NKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRV 367

Query: 312 ENSKKVFNGMP-RPDLVSWTSLIAG 335
           E + ++   MP  P    W SL+  
Sbjct: 368 EEAFELIKKMPFEPTAAIWGSLLGA 392


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/433 (36%), Positives = 258/433 (59%), Gaps = 32/433 (7%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           EG +VH     S  +  + ++N +LDMY KCG + +A  +F+EM  RD  S+N +I+   
Sbjct: 331 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 390

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           + G+ E+  +LF  M Q          SG     +P                  ++FT  
Sbjct: 391 QNGNEEKTLSLFVWMLQ----------SGM----EP------------------DEFTYG 418

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SVL A +  Q L  G EIH  I+++    D  V  AL DMY KCG + +A ++ D++ ++
Sbjct: 419 SVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQ 478

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
            VVSW A+I  +  + + EE    FS++++ G+ P+ FT+A +L+ CA+    ELGKQ+H
Sbjct: 479 TVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIH 538

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
             + +      ++ +S LV MYSKCGN+++ + +F   P  D V+W +++ GYAQ+G+ +
Sbjct: 539 AQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGE 598

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +AL+ FE +     +P+H  F+ VL AC H GLV+KGL YFHS+   +GL    +HY+C+
Sbjct: 599 EALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCV 658

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VD++ RSG+  +A ++I  MP + D  +W +LL  C+IHGN+++A++AA ++ ++EPE+ 
Sbjct: 659 VDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDS 718

Query: 464 ATYVTMANIYASA 476
           A YV ++NIYA+A
Sbjct: 719 AAYVLLSNIYANA 731



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 241/470 (51%), Gaps = 33/470 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC----GNISDAQT 82
           + ++ +++ C        G ++H      GF   V   + LLDMYAKC     ++     
Sbjct: 159 TTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLE 218

Query: 83  LFDEMQE------------------RDVCSYNTMISGFTKGGSLEQARN-LFDEMPQRDN 123
           LF EMQ+                   DV      +  + K  +L    N LF+ +P  + 
Sbjct: 219 LFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNL 278

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            S+ A+I GY R ++ IEAL ++R++Q     + ++ +LS    A + I+    G ++HG
Sbjct: 279 QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGL-DEVSLSGAXRACAVIKGDLEGLQVHG 337

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
             M++   S+  V +A+ DMYGKCG++ EA  +F++MV RD VSW A+I  + Q G  E+
Sbjct: 338 LSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEK 397

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYSFAASAL 301
             +LF  +++SG+ P+ FT+  VL ACA   A   G ++H  +  +R+G D  SF   AL
Sbjct: 398 TLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLD--SFVGIAL 455

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + MYSKCG +E ++K+ + +    +VSW ++I+G++     ++A + F  +L+ G  PD+
Sbjct: 456 IDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 515

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
             +  +L  C +   V+ G Q    I +K  L   A   + +VD+ ++ G   + + +  
Sbjct: 516 FTYATILDTCANLVTVELGKQIHAQIIKKE-LQSDAYISSTLVDMYSKCGNMQDFQLIFE 574

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE--ALFEIEPENPATYVTM 469
           K P + D   W +++ G   HG  + A +  E   L  ++P N AT++ +
Sbjct: 575 KAPNR-DFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKP-NHATFLAV 622



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 231/516 (44%), Gaps = 82/516 (15%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           +Q +      +S + Q C   +AL  GK+ H+ +  + FKP VF++NCL+ MY KC ++ 
Sbjct: 35  YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLG 94

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
            A  +FD M +RD  S+N M+ G+   G +  A+ LFD MP                   
Sbjct: 95  FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP-----------------GT 137

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
               ++L+        +V ++ T + VL + S+++    G +IHG  ++ GFD D V  S
Sbjct: 138 GCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGS 197

Query: 199 ALSDMYGKCGSINE----ARQIFDKM------------------VDRDVV---------- 226
           AL DMY KC   N+      ++F +M                     DVV          
Sbjct: 198 ALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYM 257

Query: 227 ----------------------SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
                                 S+ A+I  Y +  +  E   +F  L KSG+  +  + +
Sbjct: 258 KCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLS 317

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           G   ACA    +  G QVHG   +         A+A++ MY KCG +  +  VF  M   
Sbjct: 318 GAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSR 377

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D VSW ++IA + QNG  +K L  F  +L+SG +PD   +  VL AC     ++ G++  
Sbjct: 378 DAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIH 437

Query: 385 HS-IKEKHGLTYTADHYACI--VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           +  IK + GL    D +  I  +D+ ++ G   +AE +  ++  +     W +++ G  +
Sbjct: 438 NRIIKSRMGL----DSFVGIALIDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSL 492

Query: 442 HGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
               + A++    + E  ++P+N  TY T+ +  A+
Sbjct: 493 QKQSEEAQKTFSKMLEMGVDPDN-FTYATILDTCAN 527



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 154/330 (46%), Gaps = 36/330 (10%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++ L   + +L     P    Y S+++ C   +AL  G ++H+ +  S      F+   L
Sbjct: 396 EKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIAL 455

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY+KCG +  A+ L D + E+ V S+N +ISGF+     E+A+  F +M         
Sbjct: 456 IDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM--------- 506

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                    E  V  + FT +++L   + +  + LGK+IH  I+
Sbjct: 507 ------------------------LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQII 542

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +    SD  + S L DMY KCG++ + + IF+K  +RD V+W AM+  Y Q G  EE   
Sbjct: 543 KKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALK 602

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ-VHGYMTRIGYDPYSFAASALVHMY 305
           +F  +    ++PN  TF  VL AC      E G    H  ++  G DP     S +V + 
Sbjct: 603 IFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIM 662

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
            + G V  + ++  GMP   D V W +L++
Sbjct: 663 GRSGQVSKALELIEGMPFEADAVIWRTLLS 692



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 144/365 (39%), Gaps = 75/365 (20%)

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +++ + + K T S +    S  + L  GK+ H  ++ T F     V + L  MY KC  +
Sbjct: 34  SYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDL 93

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA--LFSELIKSGIRP---------- 258
             A ++FD M  RD VSW AM+  Y   GR + G A  LF  +  +G             
Sbjct: 94  GFAFKVFDGMPQRDTVSWNAMLFGY--AGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGR 151

Query: 259 -----NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC----- 308
                +  TFA VL +C+       G Q+HG   ++G+D      SAL+ MY+KC     
Sbjct: 152 MGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQND 211

Query: 309 ---GNVENSKK----------------------------------------------VFN 319
              G +E  K+                                              +FN
Sbjct: 212 DLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFN 271

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            +P  +L S+ ++I GYA++    +AL  F LL KSG   D +   G   AC       +
Sbjct: 272 SLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE 331

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           GLQ  H +  K            I+D+  + G   EA  V  +M +  D   W +++   
Sbjct: 332 GLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAH 389

Query: 440 RIHGN 444
             +GN
Sbjct: 390 EQNGN 394


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 264/454 (58%), Gaps = 35/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ S Y+SL+Q C   +A++ GK++H+ +  +GF     I+  L+++Y  C         
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCD-------- 124

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA- 142
                                  SL  AR LFD +P+ + F W  +I GY  +N P EA 
Sbjct: 125 -----------------------SLSSARLLFDRIPKHNIFLWNVLIRGYA-WNGPYEAA 160

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + LY  M ++   V + FT   VL A +A+  +  G+EIH ++++TG++ D  V +AL D
Sbjct: 161 VQLYYQMFDY-GLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALID 219

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG +  AR++FDK++ RD V W +M+  Y Q G  +   +L SE++ +G+RP   T
Sbjct: 220 MYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEAT 279

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
               ++A AD+AA   G+++HG   R  ++ +    +ALV MY+KCG+V  ++ +F  + 
Sbjct: 280 LVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLG 339

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              +VSW ++I GYA +G   +AL+ FE + +   +PDHI FVGVL+AC+H GL+++G  
Sbjct: 340 VKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWM 398

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +F ++   + +  T  HY C+VDLL  SGR  EA ++I +M + PD  +W +LL  C+IH
Sbjct: 399 FFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIH 458

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++L + A E L E+EP++   YV ++NIYA A
Sbjct: 459 ANVELGEIALERLIELEPDDAGNYVILSNIYAQA 492


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 181/506 (35%), Positives = 271/506 (53%), Gaps = 74/506 (14%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L+ A+ +  Q+      P    Y  +++       + EG+K+H+ +  +G +   ++ N 
Sbjct: 89  LRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNS 148

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYA+ G                      ++ GFT+         +F+EMP+RD  SW
Sbjct: 149 LMDMYAELG----------------------LVEGFTQ---------VFEEMPERDAVSW 177

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             MISGYVR  +  EA+D+YR MQ   N   N+ T+ S LSA + ++ L LGKEIH YI 
Sbjct: 178 NIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIA 237

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV------------------------- 221
               D   ++ +AL DMY KCG ++ AR+IFD M+                         
Sbjct: 238 NE-LDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARY 296

Query: 222 ------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
                  RDVV WTAMI  Y Q    E+  ALF E+   G+ P+ F    +L  CA   A
Sbjct: 297 LFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGA 356

Query: 276 EELGKQVHGYM--TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
            E GK +H Y+   RI  D  +  ++AL+ MY+KCG +E S ++FNG+   D  SWTS+I
Sbjct: 357 LEQGKWIHNYIDENRIKMD--AVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSII 414

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            G A NG   +ALE FE +   G +PD I FV VL+AC HAGLV++G + FHS+   + +
Sbjct: 415 CGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHI 474

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF---LWASLLGGCRIHGNLDLAKR 450
               +HY C +DLL R+G   EAE+++ K+P + ++    L+ +LL  CR +GN+D+ +R
Sbjct: 475 EPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGER 534

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            A AL +++  + + +  +A+IYASA
Sbjct: 535 LATALAKVKSSDSSLHTLLASIYASA 560



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 149/323 (46%), Gaps = 15/323 (4%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS--DMYGKCGSINEARQ 215
           +K    + +S + + + +   K+I  +I   G   D  + + L    M    G  N A +
Sbjct: 4   SKLLKGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANR 63

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           IF+ +    +  +  MI  + + G      +LF +L + G+ P+ +T+  VL        
Sbjct: 64  IFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGE 123

Query: 276 EELGKQVHGYMTRIG--YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
              G+++H ++ + G  +DPY    ++L+ MY++ G VE   +VF  MP  D VSW  +I
Sbjct: 124 VREGEKIHAFVVKTGLEFDPY--VCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMI 181

Query: 334 AGYAQNGMPDKALE-YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           +GY +    ++A++ Y  + ++S  +P+    V  L+AC     ++ G +    I  +  
Sbjct: 182 SGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELD 241

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           LT    +   ++D+  + G    A ++   M +K +   W S++ G  I G LD A+   
Sbjct: 242 LTPIMGN--ALLDMYCKCGCVSVAREIFDAMIVK-NVNCWTSMVTGYVICGQLDQARY-- 296

Query: 453 EALFEIEP-ENPATYVTMANIYA 474
             LFE  P  +   +  M N Y 
Sbjct: 297 --LFERSPSRDVVLWTAMINGYV 317


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 263/454 (57%), Gaps = 34/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQT 82
           P  ++YS L++ C +   +E+G+ VH+HL  S F    + + N +++MYAKCG       
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG------- 137

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                    L+ AR +FDEMP +D  +WTA+I+G+ + N+P +A
Sbjct: 138 ------------------------CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDA 173

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L L+  M        N FTLSS+L A  +   L  G ++H + ++ G+ S   V SAL D
Sbjct: 174 LLLFPQMLRL-GLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVD 232

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY +CG ++ A+  FD M  +  VSW A+I  + ++G  E    L  ++ +   +P  FT
Sbjct: 233 MYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFT 292

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           ++ V +ACA   A E GK VH +M + G    +F  + L+ MY+K G+++++K+VF+ + 
Sbjct: 293 YSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLV 352

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           +PD+VSW +++ G AQ+G+  + L+ FE +L+ G +P+ I F+ VLTAC+H+GL+D+GL 
Sbjct: 353 KPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLY 412

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF  +K K+ +     HY   VDLL R G    AE  I +MP++P   +W +LLG CR+H
Sbjct: 413 YFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++L   AAE  FE++P +    + ++NIYASA
Sbjct: 472 KNMELGVYAAERAFELDPHDSGPRMLLSNIYASA 505



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 37/331 (11%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R ++AL +  Q+      P+    SSL++       L+ G ++H+     G++  V++ +
Sbjct: 169 RPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMYA+CG++  AQ  FD M  +   S+N +ISG  + G  E A +L  +M QR NF 
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM-QRKNF- 286

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                       QP                    FT SSV SA ++I  L  GK +H ++
Sbjct: 287 ------------QP------------------THFTYSSVFSACASIGALEQGKWVHAHM 316

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +++G      + + L DMY K GSI++A+++FD++V  DVVSW  M+    Q G  +E  
Sbjct: 317 IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETL 376

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
             F ++++ GI PN  +F  VL AC+     + G      M +   +P        V + 
Sbjct: 377 DRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLL 436

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            + G ++ +++    MP  P    W +L+  
Sbjct: 437 GRVGLLDRAERFIREMPIEPTAAVWGALLGA 467



 Score = 38.5 bits (88), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
            L   +L+ +    PD+ ++  +L  CT  G V++G      + + H L         IV
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           ++ A+ G   +A  +  +MP K D   W +L+ G
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTK-DMVTWTALIAG 163


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 170/478 (35%), Positives = 265/478 (55%), Gaps = 35/478 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           +  LC+  +LKEAL  +  +        Y +++  C   RA+ EG++VH+H+  + + P 
Sbjct: 65  LKTLCSSGQLKEALLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPS 124

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V++   L+ +Y KC  + DA                               R +FDEMPQ
Sbjct: 125 VYLRTRLIVLYNKCDCLGDA-------------------------------REMFDEMPQ 153

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           ++  SWTAMIS Y +     EAL+L+  M    ++  N FT +++L++         G++
Sbjct: 154 KNVVSWTAMISAYSQRGFAFEALNLFVEMLR-SDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH   ++  ++S   V S+L DMY K G I +A  +F  + +RDVV+ TA+I  Y Q G 
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF +L   G+  N+ T+A VL A +  AA   GKQVH ++ R G   Y    ++
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 332

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQP 359
           L+ MYSKCGNV  ++++F+ MP    +SW +++ GY+++GM  + LE F+L+ +    +P
Sbjct: 333 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 392

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHS-IKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           D I ++ VL+ C+H  L D GL+ F++ +  K G+     HY C+VDLL R+GR  EA D
Sbjct: 393 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 452

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            I KMP  P   +W SLLG CR+H ++++     + L E+EPEN   YV ++N+YASA
Sbjct: 453 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASA 510


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 258/456 (56%), Gaps = 6/456 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + +++++ C     +E GK+VH  +  +G    V + N +LDMYAKCG    A+ +
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M ERD  S+N  I    + G +  +  LFDE P RD  SW  +ISG +R     +AL
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADAL 229

Query: 144 D-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             L RM Q     V N +T S+       +    LG+++HG ++    + D  V S+L D
Sbjct: 230 SHLRRMAQ--AGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMD 287

Query: 203 MYGKCGSINEARQIFDKM--VDRDV-VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           MY KCG +  A  +FD    + RD+  +W+ M+  Y Q GR EE   LF  +++ G+  +
Sbjct: 288 MYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAAD 347

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            FT   V  ACA+    E G+QVHG + ++ Y   +  ASA+V MY+KCGN+E+++ +F+
Sbjct: 348 RFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFD 407

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
                ++  WTS++  YA +G    A+E FE +      P+ I  VGVL+AC+H GLV +
Sbjct: 408 RACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSE 467

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G  YF  ++E++G+  + +HY CIVDL  RSG   +A++ I +  +  +  +W +LL  C
Sbjct: 468 GELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSAC 527

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           R+H + + AK A+E L ++E  +  +YV ++NIYA+
Sbjct: 528 RLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYAT 563



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 174/381 (45%), Gaps = 40/381 (10%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           AR +FDE P R    WT  ISG  R  +  + +  +  M     +  N F L++V+   +
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
            +  +  GK +HG+++R G   D V+ +A+ DMY KCG    AR++F  M +RD VSW  
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 231 MIGRYFQEGRREEGFALFSE-------------------------------LIKSGIRPN 259
            IG   Q G       LF E                               + ++G+  N
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFN 243

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            +T++            +LG+Q+HG +     +  +F  S+L+ MY KCG +E +  VF+
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFD 303

Query: 320 ---GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
               + R    +W++++AGY QNG  ++AL+ F  +L+ G   D      V  AC + G+
Sbjct: 304 HWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGM 363

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           V++G Q  H   EK      A   + IVD+ A+ G   +A  +  +   K +  +W S+L
Sbjct: 364 VEQGRQ-VHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSML 421

Query: 437 GGCRIHGNLDLAKRAAEALFE 457
                HG      R A  LFE
Sbjct: 422 CSYASHGQ----GRIAIELFE 438



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 115/278 (41%), Gaps = 39/278 (14%)

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNA 269
           ++AR +FD+   R    WT  I    + GR  +G   F+E++  G   PNAF  A V+  
Sbjct: 62  HDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRC 121

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-------- 321
           CA     E GK+VHG+M R G        +A++ MY+KCG  E +++VF  M        
Sbjct: 122 CAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSW 181

Query: 322 -----------------------PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
                                  P  D  SW ++I+G  ++G    AL +   + ++G  
Sbjct: 182 NIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVV 241

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            +H  +           L D G Q  H       L   A   + ++D+  + G    A  
Sbjct: 242 FNHYTYSTAFVLAGMLLLPDLGRQ-LHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAAS 300

Query: 419 VISKM-PMKPD-KFLWASLLGGCRIHGN----LDLAKR 450
           V     P+  D  F W++++ G   +G     LDL +R
Sbjct: 301 VFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRR 338


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 260/468 (55%), Gaps = 35/468 (7%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFI--SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           AL  G ++ + +   G  P   I     LL   A+CG I++A+ LF+++ +  V S+N M
Sbjct: 299 ALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAM 358

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I+G+ + G +++A+ LFD MP R+  SW  MI+GY +  +  EALDL + +      + +
Sbjct: 359 ITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHR-NGMLPS 417

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS--------- 209
             +L+S   A S I  L  G+++H   ++ G   +  V +AL  MYGKC +         
Sbjct: 418 LSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFN 477

Query: 210 ----------------------INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
                                 + +AR IFD M+ RDVVSWT +I  Y Q  R +E    
Sbjct: 478 RMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEF 537

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  ++    +PN+     +L+ C    + +LG+Q+H    + G D     A+AL+ MY K
Sbjct: 538 FKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFK 597

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG   +S KVF+ M   D+ +W + I G AQ+G+  +A++ +E +   G  P+ + FVG+
Sbjct: 598 CG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGL 656

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L AC+HAGLVD+G Q+F S+   +GLT   +HYAC+VDLL R+G    AE  I  MP++P
Sbjct: 657 LNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEP 716

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           D  +W++LLG C+IH N ++ +RAAE LF  EP N   YV ++NIY+S
Sbjct: 717 DTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSS 764



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 240/479 (50%), Gaps = 25/479 (5%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPG 60
           I   CN   L++A  +   IS  +    + L+  + R  R L+  ++V   +     +  
Sbjct: 71  ISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLD-ARRVFDGMP----ERN 125

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
               N ++  Y + G+I+ A+ LFD M  RDV S+N+M++G+     +  A NLF +MPQ
Sbjct: 126 TVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQ 185

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R+  +WT MISGYVR  Q  +  D++RMM + E +  ++   +SVLSAV+ +Q L + + 
Sbjct: 186 RNLVTWTVMISGYVRIEQHGKGWDIFRMMHH-EGASPDQSNFASVLSAVTGLQDLGVLEV 244

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGS-INEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           +   +++TGF+SD V+ +++ ++Y +  S ++ A + FD MV+R+  +W+ MI      G
Sbjct: 245 LRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGG 304

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           R +   A++       I        G+        A  L +Q+         DP   + +
Sbjct: 305 RIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIP--------DPIVVSWN 356

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           A++  Y + G V+ +K++F+ MP  + +SW  +IAGYAQNG  ++AL+  + L ++G  P
Sbjct: 357 AMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLP 416

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAE 417
                     AC+H G ++ G Q  HS+  K G  + +  Y C  ++ +  +        
Sbjct: 417 SLSSLTSSFLACSHIGALETGRQ-VHSLAVKAGCQFNS--YVCNALISMYGKCRNMEYVR 473

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            V ++M +K D   W S +     +  L+ A+   + +      +  ++ T+ + YA A
Sbjct: 474 QVFNRMRVK-DTVSWNSFIAALVQNNMLEDARHIFDNMLS---RDVVSWTTIISAYAQA 528



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 162/302 (53%), Gaps = 4/302 (1%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C    ALE G++VHS    +G +   ++ N L+ MY KC N+   + +F+ M+ +D  S+
Sbjct: 428 CSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSW 487

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+ I+   +   LE AR++FD M  RD  SWT +IS Y +  +  EA++ ++ M + E+ 
Sbjct: 488 NSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLH-EHE 546

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N   L+ +LS    +   +LG++IH   ++ G DS+ +V +AL  MY KCG   ++ +
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCA-DSHK 605

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD M +RD+ +W   I    Q G   E   ++  +   G+ PN  TF G+LNAC+    
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 276 EELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLI 333
            + G Q    M+R  G  P     + +V +  + G+V+ ++K    MP  PD V W++L+
Sbjct: 666 VDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALL 725

Query: 334 AG 335
             
Sbjct: 726 GA 727



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 184/393 (46%), Gaps = 36/393 (9%)

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
           A+ G + +A+ +FD M  RD+ ++N+MIS +   G LE AR LFD +   +  + T ++S
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLS 103

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           GY R  + ++A  ++  M    N+V+    +S  +         RL            FD
Sbjct: 104 GYARLGRVLDARRVFDGMPE-RNTVAWNAMVSCYVQNGDITMARRL------------FD 150

Query: 192 S----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +    D   W+++   Y     + +A  +F +M  R++V+WT MI  Y +  +  +G+ +
Sbjct: 151 AMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDI 210

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELG--KQVHGYMTRIGYDPYSFAASALVHMY 305
           F  +   G  P+   FA VL+A      ++LG  + +   + + G++      ++++++Y
Sbjct: 211 FRMMHHEGASPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVY 268

Query: 306 SK-CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV- 363
           ++    ++ + K F+GM   +  +W+++IA  +  G  D A+  +      G  P   + 
Sbjct: 269 TRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVY------GRDPVKSIP 322

Query: 364 -FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               +LT     G + +    F  I +   +++ A     ++    ++G   EA+++  +
Sbjct: 323 SQTALLTGLARCGRITEARILFEQIPDPIVVSWNA-----MITGYMQNGMVDEAKELFDR 377

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           MP + +   WA ++ G   +G  + A    +AL
Sbjct: 378 MPFR-NTISWAGMIAGYAQNGRSEEALDLLQAL 409



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 121/292 (41%), Gaps = 54/292 (18%)

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            + G + EAR++FD M  RD+++W +MI  Y   G  E+   LF  +    +R      +
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLS 103

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGY-DPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           G            LG+ +       G  +  + A +A+V  Y + G++  ++++F+ MP 
Sbjct: 104 GY---------ARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPS 154

Query: 324 PDLVSWTSLIAGYAQN-----------GMPDKAL--------------------EYFELL 352
            D+ SW S++ GY  +            MP + L                    + F ++
Sbjct: 155 RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM 214

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKG-LQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
              G  PD   F  VL+A T  GL D G L+    +  K G          I+++  R  
Sbjct: 215 HHEGASPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDA 272

Query: 412 RFHEAEDVISKM---PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
               A D+  K     ++ +++ W++++      G +D    AA A++  +P
Sbjct: 273 ---SALDIAIKFFDGMVERNEYTWSTMIAALSHGGRID----AAIAVYGRDP 317


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 166/463 (35%), Positives = 257/463 (55%), Gaps = 36/463 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++ H+   P+   Y  +++ C    AL+ GK+VH+ ++  G +  V +   LL MY KCG
Sbjct: 119 EMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCG 178

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           +I+                               +AR +FD +   D  SWT MI  Y +
Sbjct: 179 SIN-------------------------------EARRIFDNLMNHDIISWTVMIGAYAQ 207

Query: 136 YNQPIEALDLYRMMQNFENS--VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
                EA   YR+M   E      N  T  S+L+A ++   L+  K +H + +  G + D
Sbjct: 208 SGNGKEA---YRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELD 264

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V +AL  MY K GSI++AR +FD+M  RDVVSW  MIG + + GR  E + LF ++  
Sbjct: 265 VRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQT 324

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
            G +P+A  F  +LNACA   A E  K++H +    G +      +ALVHMYSK G++++
Sbjct: 325 EGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDD 384

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ VF+ M   ++VSW ++I+G AQ+G+   ALE F  +   G +PD + FV VL+AC+H
Sbjct: 385 ARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSH 444

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           AGLVD+G   + ++ + +G+     H  C+VDLL R+GR  EA+  I  M + PD+  W 
Sbjct: 445 AGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWG 504

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LLG CR +GN++L +  A+   +++P+N ATYV ++NIYA A
Sbjct: 505 ALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEA 547



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/416 (31%), Positives = 218/416 (52%), Gaps = 34/416 (8%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +Y  +++ C + + L   K+VH  +  S  +    + N LL +Y +CG            
Sbjct: 30  MYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGR----------- 78

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                               L++AR +FD + ++   SW AMI+GYV +    +A+ L+R
Sbjct: 79  --------------------LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFR 118

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M + E    N  T   +L A +++  L+ GKE+H  I   G +SD  V +AL  MYGKC
Sbjct: 119 EMCH-EGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKC 177

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           GSINEAR+IFD +++ D++SWT MIG Y Q G  +E + L  ++ + G +PNA T+  +L
Sbjct: 178 GSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSIL 237

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           NACA   A +  K+VH +    G +      +ALV MY+K G++++++ VF+ M   D+V
Sbjct: 238 NACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVV 297

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW  +I  +A++G   +A + F  +   G +PD I+F+ +L AC  AG ++  ++  H  
Sbjct: 298 SWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE-WVKKIHRH 356

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               GL         +V + ++SG   +A  V  +M ++ +   W +++ G   HG
Sbjct: 357 ALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHG 411



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 163/325 (50%), Gaps = 9/325 (2%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           +++ F    VL      + L   K++H  I+++  + +  V + L  +Y +CG + EAR 
Sbjct: 25  ITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARC 84

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD +V +   SW AMI  Y +    E+   LF E+   G++PNA T+  +L ACA  +A
Sbjct: 85  VFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSA 144

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + GK+VH  +   G +      +AL+ MY KCG++  ++++F+ +   D++SWT +I  
Sbjct: 145 LKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGA 204

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           YAQ+G   +A      + + G +P+ I +V +L AC   G + K ++  H      GL  
Sbjct: 205 YAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL-KWVKRVHRHALDAGLEL 263

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
                  +V + A+SG   +A  V  +M ++ D   W  ++G    HG       A +  
Sbjct: 264 DVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAFAEHGR---GHEAYDLF 319

Query: 456 FEIEPE----NPATYVTMANIYASA 476
            +++ E    +   ++++ N  ASA
Sbjct: 320 LQMQTEGCKPDAIMFLSILNACASA 344



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 9/237 (3%)

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E   +    ++ G+  ++F +  VL  C         KQVH  + +   +  +   + L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           H+Y +CG ++ ++ VF+ + +    SW ++IAGY ++   + A+  F  +   G QP+  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            ++ +L AC     +  G +  H+     GL         ++ +  + G  +EA  +   
Sbjct: 131 TYMIILKACASLSALKWG-KEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMANIYAS 475
           + M  D   W  ++G     GN    K A   + ++E E    N  TYV++ N  AS
Sbjct: 190 L-MNHDIISWTVMIGAYAQSGN---GKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/476 (35%), Positives = 271/476 (56%), Gaps = 41/476 (8%)

Query: 5   LCNQRRLKEALQILHQI-SH---PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           LC QR L  A++ +  + SH      + YS LI+ C  NRA+ EG  +  HL  +G +P 
Sbjct: 36  LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+ N L++MY K   ++DA                                 LFD+MPQ
Sbjct: 96  MFLVNVLINMYVKFNLLNDAH-------------------------------QLFDQMPQ 124

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R+  SWT MIS Y +     +AL+L  +M   +N   N +T SSVL + + +  +R+   
Sbjct: 125 RNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLRSCNGMSDVRM--- 180

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H  I++ G +SD  V SAL D++ K G   +A  +FD+MV  D + W ++IG + Q  R
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            +    LF  + ++G      T   VL AC   A  ELG Q H ++ +  YD      +A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNA 298

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY KCG++E++ +VFN M   D+++W+++I+G AQNG   +AL+ FE +  SGT+P+
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           +I  VGVL AC+HAGL++ G  YF S+K+ +G+    +HY C++DLL ++G+  +A  ++
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++M  +PD   W +LLG CR+  N+ LA+ AA+ +  ++PE+  TY  ++NIYA++
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANS 474



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+ C    L++AL++ +Q+       +S++I    QN   +E  K+   +KSSG KP  
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE-------RDVCSYNTMISGFTKGGSLEQARNL 114
                +L   +  G + D    F  M++       R+   Y  MI    K G L+ A  L
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDLLGKAGKLDDAVKL 417

Query: 115 FDEMP-QRDNFSWTAMI 130
            +EM  + D  +W  ++
Sbjct: 418 LNEMECEPDAVTWRTLL 434


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 171/476 (35%), Positives = 271/476 (56%), Gaps = 41/476 (8%)

Query: 5   LCNQRRLKEALQILHQI-SH---PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           LC QR L  A++ +  + SH      + YS LI+ C  NRA+ EG  +  HL  +G +P 
Sbjct: 36  LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+ N L++MY K   ++DA                                 LFD+MPQ
Sbjct: 96  MFLVNVLINMYVKFNLLNDAH-------------------------------QLFDQMPQ 124

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R+  SWT MIS Y +     +AL+L  +M   +N   N +T SSVL + + +  +R+   
Sbjct: 125 RNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLRSCNGMSDVRM--- 180

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H  I++ G +SD  V SAL D++ K G   +A  +FD+MV  D + W ++IG + Q  R
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            +    LF  + ++G      T   VL AC   A  ELG Q H ++ +  YD      +A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNA 298

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY KCG++E++ +VFN M   D+++W+++I+G AQNG   +AL+ FE +  SGT+P+
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           +I  VGVL AC+HAGL++ G  YF S+K+ +G+    +HY C++DLL ++G+  +A  ++
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++M  +PD   W +LLG CR+  N+ LA+ AA+ +  ++PE+  TY  ++NIYA++
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANS 474



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+ C    L++AL++ +Q+       +S++I    QN   +E  K+   +KSSG KP  
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE-------RDVCSYNTMISGFTKGGSLEQARNL 114
                +L   +  G + D    F  M++       R+   Y  MI    K G L+ A  L
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDLLGKAGKLDDAVKL 417

Query: 115 FDEMP-QRDNFSWTAMI 130
            +EM  + D  +W  ++
Sbjct: 418 LNEMECEPDAVTWRTLL 434


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 247/434 (56%), Gaps = 32/434 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  GK +H+     GF    F+ N L  MY KCG                          
Sbjct: 241 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKP------------------------ 276

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
                  +    LF++M   D  SWT +IS YV+  +   A++ ++ M+    S  NK+T
Sbjct: 277 -------DYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVS-PNKYT 328

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
            ++V+S+ + +   + G++IHG+++R G  +   V +++  +Y KCG +  A  +F  + 
Sbjct: 329 FAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGIT 388

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            +D++SW+ +I  Y Q G  +E F   S + + G +PN F  + VL+ C   A  E GKQ
Sbjct: 389 RKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQ 448

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH ++  IG D  +   SA++ MYSKCG+V+ + K+FNGM   D++SWT++I GYA++G 
Sbjct: 449 VHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGY 508

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             +A+  FE +   G +PD+++F+GVLTAC HAG+VD G  YF  +   + ++ + +HY 
Sbjct: 509 SQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYG 568

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C++DLL R+GR  EAE +I  MP   D  +W++LL  CR+HG++D  +  AE L +++P 
Sbjct: 569 CLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPN 628

Query: 462 NPATYVTMANIYAS 475
           +  T++T+ANIYA+
Sbjct: 629 SAGTHITLANIYAA 642



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 211/425 (49%), Gaps = 38/425 (8%)

Query: 23  HPSPS----IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           HP P     + S  ++ C     +  G+ +H     SG    VF+S+ L+DMY K G I 
Sbjct: 117 HPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIE 176

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
               +F++M  R+V S+  +I+G    G   +    F EM       W + + GY     
Sbjct: 177 QGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEM-------WRSKV-GY----- 223

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
                              +  T +  L A +    L  GK IH   ++ GFD    V +
Sbjct: 224 -------------------DSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVIN 264

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
            L+ MY KCG  +   ++F+KM   DVVSWT +I  Y Q G  E     F  + KS + P
Sbjct: 265 TLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSP 324

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N +TFA V+++CA+ AA + G+Q+HG++ R+G       A++++ +YSKCG ++++  VF
Sbjct: 325 NKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVF 384

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           +G+ R D++SW+++I+ Y+Q G   +A +Y   + + G +P+      VL+ C    L++
Sbjct: 385 HGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLE 444

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G Q  H+     G+ + A  ++ I+ + ++ G   EA  + + M +  D   W +++ G
Sbjct: 445 QGKQ-VHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKIN-DIISWTAMING 502

Query: 439 CRIHG 443
              HG
Sbjct: 503 YAEHG 507



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 186/368 (50%), Gaps = 5/368 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+ +    K G L +AR +FD+M  RD  SWT +I+GYV  +   EAL L+  M      
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             ++F +S  L A +    +  G+ +HG+ +++G      V SAL DMY K G I +  +
Sbjct: 121 QRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCR 180

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+KM+ R+VVSWTA+I      G   EG   FSE+ +S +  ++ TFA  L A AD + 
Sbjct: 181 VFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSL 240

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              GK +H    + G+D  SF  + L  MY+KCG  +   ++F  M  PD+VSWT+LI+ 
Sbjct: 241 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIST 300

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q G  + A+E F+ + KS   P+   F  V+++C +      G Q  H    + GL  
Sbjct: 301 YVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQ-IHGHVLRLGLVN 359

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
                  I+ L ++ G    A  V   +  K D   W++++    ++     AK A + L
Sbjct: 360 ALSVANSIITLYSKCGLLKSASLVFHGITRK-DIISWSTIIS---VYSQGGYAKEAFDYL 415

Query: 456 FEIEPENP 463
             +  E P
Sbjct: 416 SWMRREGP 423



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 166/351 (47%), Gaps = 36/351 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++++I  C    A + G+++H H+   G    + ++N ++ +Y+KCG +  A  +
Sbjct: 324 PNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLV 383

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  +  +D+ S++T+IS +++GG  ++A          D  SW                 
Sbjct: 384 FHGITRKDIISWSTIISVYSQGGYAKEA---------FDYLSW----------------- 417

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                    E    N+F LSSVLS   ++  L  GK++H +++  G D + +V SA+  M
Sbjct: 418 ------MRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISM 471

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+ EA +IF+ M   D++SWTAMI  Y + G  +E   LF ++   G++P+   F
Sbjct: 472 YSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMF 531

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            GVL AC      +LG      MT +    P       L+ +  + G +  ++ +   MP
Sbjct: 532 IGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMP 591

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK--SGTQPDHIVFVGVLTA 370
              D V W++L+     +G  D+     E LL+    +   HI    +  A
Sbjct: 592 FHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAA 642



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 20/261 (7%)

Query: 24  PSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           P P+ +  SS++  C     LE+GK+VH+HL   G      + + ++ MY+KCG++ +A 
Sbjct: 423 PKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEAS 482

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +F+ M+  D+ S+  MI+G+ + G  ++A NLF+++          M  G +       
Sbjct: 483 KIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAG 542

Query: 142 ALDL----YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVV 196
            +DL    + +M N      +K     ++  +   +  RL +  H  I+R+  F +D+VV
Sbjct: 543 MVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLC--RAGRLSEAEH--IIRSMPFHTDDVV 598

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI---GRYFQEGRREEGFALFSELIK 253
           WS L       G ++  R   ++++  D  S    I     Y  +GR +E  A   +L+K
Sbjct: 599 WSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEA-AHIRKLMK 657

Query: 254 SG--IRPNAFTFAGV---LNA 269
           S   I+   +++  V   LNA
Sbjct: 658 SKGVIKERGWSWVNVNDQLNA 678


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 173/466 (37%), Positives = 266/466 (57%), Gaps = 39/466 (8%)

Query: 13  EALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           +A++ +H+    + +I YS LI+ C    A+++ + VH H+ S+G++P  F+ N L++MY
Sbjct: 2   KAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMY 61

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
                                           K G L++ARNLFDEMP R+  SWT MIS
Sbjct: 62  -------------------------------VKFGLLDEARNLFDEMPDRNVVSWTTMIS 90

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
            Y   N   +ALD   +M   E    N +T SSVL A   +  LR   ++HG I++ G +
Sbjct: 91  AYSNSNLNHKALDFLILMLR-EGVRPNMYTYSSVLRACDGLLNLR---QLHGSILKVGLE 146

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           SD  V SAL D Y K G  ++A  +F++M+  D+V W ++IG + Q    +E   L+  +
Sbjct: 147 SDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM 206

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
            ++    +  T   VL AC   A  ELG+QVH ++ +  YD      +AL+ MY KCG++
Sbjct: 207 KRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSL 264

Query: 312 ENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           E++  +F  M    D++SW+++IAG AQNG    AL+ FE +   G +P++I  +GVL A
Sbjct: 265 EDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFA 324

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+HAGLV+ G  YF S+KE  G+    +HY CI+DLL R+G+  EA  +I +M  +PD  
Sbjct: 325 CSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAV 384

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            W  LLG CR+H N+DLA  AA+ + +++P +  TY+ ++NIYA++
Sbjct: 385 TWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANS 430


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 273/476 (57%), Gaps = 6/476 (1%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C  RRL  A  +  +I       +++LI    ++    E   +   ++ SG KP  F  +
Sbjct: 189 CEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFS 248

Query: 66  CLLDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            +L       + +  Q L          RD    N ++  ++K   + + RNLF+EMP+ 
Sbjct: 249 GVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPEL 308

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  S+  +IS Y +  Q  E+L+L+R MQ       N F  +++LS  + +  L++G+++
Sbjct: 309 DFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRN-FPFATMLSIAANLSSLQVGRQV 367

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H   +    DS   V ++L DMY KC   +EA  IF  +  R  VSWTA+I  Y Q+G  
Sbjct: 368 HCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLH 427

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
             G  LF+++  + +R +  TFA VL A A  A+  LGKQ+H ++ R G     F+ S L
Sbjct: 428 GAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGL 487

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V MY+KCG+++++ +VF  MP  + VSW +LI+ YA NG  + A+  F  +++SG QPD 
Sbjct: 488 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDS 547

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           +  +GVL AC+H G V++G ++F ++   +G+T    HYAC++DLL R+GRF EAE ++ 
Sbjct: 548 VSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 607

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
           +MP +PD+ +W+S+L  CRI+ N  LA+RAAE LF +E   + A YV+M+NIYA+A
Sbjct: 608 EMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAA 663



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 208/444 (46%), Gaps = 31/444 (6%)

Query: 2   IDILCNQRRLK-EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           + + C+   ++   L  L Q+  P P+                  ++V + +  +GF   
Sbjct: 1   MKLYCSANEVRSRTLATLRQLRQPPPAT-----------------RRVDARIIKTGFNTD 43

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
              SN  ++   + G +S A  ++DEM  ++  S NTMISG+ K G L  AR+LFD MP 
Sbjct: 44  TCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPD 103

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R   +WT ++  Y   N   EA  L+R M     ++ +  T +++L   +         +
Sbjct: 104 RTVVTWTILMGWYAGNNHFDEAFKLFRQMCR-SCTLPDYVTFTTLLPGCNDAVPQNAVGQ 162

Query: 181 IHGYIMRTGFDSDE--VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +H + ++ GFD++    V + L   Y +   ++ A  +F++++D+D V++  +I  Y ++
Sbjct: 163 VHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKD 222

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G   E   LF ++ +SG +P+ FTF+GVL A        LG+Q+HG     G+   +   
Sbjct: 223 GLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVG 282

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + ++H YSK   V  ++ +FN MP  D VS+  +I+ Y+Q    +++L  F  +   G  
Sbjct: 283 NQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFD 342

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA----CIVDLLARSGRFH 414
             +  F  +L+   +   +  G Q          +  TAD        +VD+ A+   F 
Sbjct: 343 RRNFPFATMLSIAANLSSLQVGRQV-----HCQAIVATADSILHVGNSLVDMYAKCEMFD 397

Query: 415 EAEDVISKMPMKPDKFLWASLLGG 438
           EAE +   +  +     W +L+ G
Sbjct: 398 EAELIFKSLSQR-STVSWTALISG 420


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 284/480 (59%), Gaps = 5/480 (1%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLI-QFCRQNRALEEGKKVHSHLKSSGFKP 59
            +D+     R+ +A ++ +   +P+   +++LI  + RQ++ LE  +   S  KS     
Sbjct: 312 TLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFD 371

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQ---ERDVCSYNTMISGFTKGGSLEQARNLFD 116
            + +S  L    A  G +   Q     ++   + ++C  NT++  + K G+L +A  +FD
Sbjct: 372 EISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFD 431

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +M  +D  SW A+I+ + +     E L L+  M        + +T  SV+ A +  + L 
Sbjct: 432 DMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLR-STMEPDDYTFGSVVKACAGKKALN 490

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            G E+HG ++++G   D  V SA+ DMY KCG + EA +I +++ +R  VSW ++I  + 
Sbjct: 491 YGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFS 550

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
            E + E   + FS +++ G+ P+ FT+A VL+ CA+ A  ELGKQ+HG + ++      +
Sbjct: 551 SEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVY 610

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
            AS +V MYSKCGN+++S+ +F   P+ D V+W+++I  YA +G+ + A++ FE +    
Sbjct: 611 IASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQN 670

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +P+H +F+ VL AC H G VDKGL YF  ++  +GL    +HY+C+VDLL RSG+ +EA
Sbjct: 671 VKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEA 730

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            ++I  MP + D  +W +LLG CR+ GN+++A++AA +L +++P++ + YV ++N+YA A
Sbjct: 731 LELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIA 790



 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 153/428 (35%), Positives = 237/428 (55%), Gaps = 12/428 (2%)

Query: 18  LHQIS----HPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           +H IS    +P+  + +S + Q C   +A+  GK+ H+ +  +GF P VF+SNCLL  Y 
Sbjct: 25  IHSISSNQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYC 84

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG 132
           KC N++ A  +FD+M +RDV S+NTMI G+   G++E A+ LFD MP+RD  SW +M+S 
Sbjct: 85  KCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSC 144

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
           Y++     ++++++  M+  E    +  T + VL A + I+   LG ++H   ++ GFDS
Sbjct: 145 YLQNGFHRKSIEIFTKMRLLEIQ-HDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDS 203

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D V  +AL DMY  C  ++ A  IF +M +R+ V W+A+I  Y +  R  EG  L+  ++
Sbjct: 204 DVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVML 263

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYSFAASALVHMYSKCGN 310
             G+  +  TFA    +CA  +A ELG Q+H Y   T  GYD  +   +A + MY+KC  
Sbjct: 264 DEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYD--NIVGTATLDMYAKCDR 321

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           + +++KVFN  P P   S  +LI GYA+     +ALE F  L KS    D I   G LTA
Sbjct: 322 MVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTA 381

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+      +G+Q  H +  K GL +       I+D+ A+ G   EA  +   M +K D  
Sbjct: 382 CSAIKGYLEGIQ-LHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAV 439

Query: 431 LWASLLGG 438
            W +++  
Sbjct: 440 SWNAIIAA 447



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 182/351 (51%), Gaps = 5/351 (1%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + DV +   ++  ++    L+ A N+F EMP+R++  W+A+I+GYVR ++  E L LY++
Sbjct: 202 DSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKV 261

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M +    VS   T +S   + + +    LG ++H Y ++T F  D +V +A  DMY KC 
Sbjct: 262 MLDEGMGVSQA-TFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCD 320

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +AR++F+   +    S  A+I  Y ++ +  E   +F  L KS +  +  + +G L 
Sbjct: 321 RMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALT 380

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+       G Q+HG   + G D     A+ ++ MY+KCG +  +  +F+ M   D VS
Sbjct: 381 ACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVS 440

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSI 387
           W ++IA + QN   ++ L  F  +L+S  +PD   F  V+ AC     ++ G++ +   I
Sbjct: 441 WNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVI 500

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           K   GL +     + I+D+  + G   EAE +  ++  +     W S++ G
Sbjct: 501 KSGMGLDWFVG--SAIIDMYCKCGMLVEAEKIHERLEERT-TVSWNSIISG 548


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  317 bits (812), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 266/454 (58%), Gaps = 25/454 (5%)

Query: 24   PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
            P+ S +   I+ C     L  G+  H      GF+  +F+S+ L+DMY+KCG + DA+ L
Sbjct: 2013 PTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARAL 2072

Query: 84   FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            FDE+  R+V S+ +MI+G+ +    + A  LF +  + +    T +  G    N P++++
Sbjct: 2073 FDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEE----TEVEDG---NNVPLDSV 2125

Query: 144  DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                              + SVLSA S +    + + +HG++++ GFD    V + L D 
Sbjct: 2126 -----------------VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 2168

Query: 204  YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFT 262
            Y KCG    ++++FD M ++D +SW +MI  Y Q G   E   +F  +++  G+R NA T
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228

Query: 263  FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             + VL ACA   A   GK +H  + ++  +      ++++ MY KCG VE +KK F+ M 
Sbjct: 2229 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 2288

Query: 323  RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              ++ SWT+++AGY  +G   +AL+ F  ++++G +P++I FV VL AC+HAGLV++G  
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 2348

Query: 383  YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            +F+++K K+ +    +HY C+VDL  R+G  +EA ++I +M MKPD  +W SLLG CRIH
Sbjct: 2349 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 2408

Query: 443  GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             N+DL + AA+ LFE++P+N   YV ++N+YA A
Sbjct: 2409 KNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADA 2442



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 178/315 (56%), Gaps = 14/315 (4%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +I+ C    +++ GK VH  L   GF   VF+ N L+D Y KCG+   A  +F++M+ R+
Sbjct: 131 VIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRN 190

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V S+ T+ISG    G L++AR +FDE+P ++  SWTAMI+GY+R  QP EAL+L++ MQ 
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            EN   N++T+ S++ A + +  L LG+ IH Y ++   +    + +AL DMY KCGSI 
Sbjct: 251 -ENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A ++F+ M  + + +W +MI      G  +E   LFSE+ +  ++P+A TF GVL AC 
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACV 369

Query: 272 DHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVE----NSKKVFNGMPRPDL 326
                + G      MT+  G  P       +  +Y++  N++    ++K+V +    P +
Sbjct: 370 HIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSI 429

Query: 327 --------VSWTSLI 333
                   V+WT L+
Sbjct: 430 CFDARAKQVAWTQLL 444



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 190/416 (45%), Gaps = 66/416 (15%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L+Q C+  + L   +++H+ +  SG      ++  L+ +Y+  G I+ A  LF ++Q   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
             ++N +I   T  G  EQA  L+  M                   Q I A         
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNM-----------------VCQGIAA--------- 123

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                 +KFT   V+ A +    + LGK +HG +++ GF  D  V + L D Y KCG   
Sbjct: 124 ------DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 212 EARQIFDKMVDRDVVSW-------------------------------TAMIGRYFQEGR 240
            A ++F+KM  R+VVSW                               TAMI  Y +  +
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF  +    I PN +T   ++ AC +     LG+ +H Y  +   +   +  +A
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MYSKCG+++++ +VF  MPR  L +W S+I     +G+  +AL  F  + +   +PD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            I F+GVL AC H   V +G  YF  + + +G+    +HY C+ +L ARS    EA
Sbjct: 358 AITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 198/399 (49%), Gaps = 22/399 (5%)

Query: 91   DVCSYNTMISGFTKGGSLEQARNL----FDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
            D  +YN+++ G   G   E   NL    +  + + +  SW ++I+   R    +EAL  +
Sbjct: 1946 DGITYNSILFGVPSGR--EDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAF 2003

Query: 147  RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
              ++     +  + +    + + SA+  L  G+  H      GF++D  V SAL DMY K
Sbjct: 2004 SSLRKL-GLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSK 2062

Query: 207  CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK--------SGIRP 258
            CG + +AR +FD++  R+VVSWT+MI  Y Q  + +    LF + ++        + +  
Sbjct: 2063 CGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPL 2122

Query: 259  NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
            ++     VL+AC+  + + + + VHG++ + G+D      + L+  Y+KCG    SKKVF
Sbjct: 2123 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVF 2182

Query: 319  NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLV 377
            + M   D +SW S+IA YAQ+G+  +ALE F  +++  G + + +    VL AC HAG +
Sbjct: 2183 DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 2242

Query: 378  DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
              G +  H    K  L Y       I+D+  + GR   A+    +M  K  K  W +++ 
Sbjct: 2243 RAG-KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKS-WTAMVA 2300

Query: 438  GCRIHGNLDLAKRAAEALFE-IEPENPATYVTMANIYAS 475
            G  +HG    AK A +  ++ +       Y+T  ++ A+
Sbjct: 2301 GYGMHGR---AKEALDIFYKMVRAGVKPNYITFVSVLAA 2336



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 145/315 (46%), Gaps = 36/315 (11%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++IH  I+R+G  +D+++   L  +Y   G I  A  +F ++ +    +W  +I      
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  E+   L+  ++  GI  + FTF  V+ AC +  + +LGK VHG + + G+    F  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 299 SALVHMYSKCG-------------------------------NVENSKKVFNGMPRPDLV 327
           + L+  Y KCG                               +++ ++++F+ +P  ++V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SWT++I GY +N  P++ALE F+ +      P+    V ++ ACT  G++  G +  H  
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-RGIHDY 282

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             K+ +         ++D+ ++ G   +A +V   MP K     W S++    +HG   L
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP-TWNSMITSLGVHG---L 338

Query: 448 AKRAAEALFEIEPEN 462
            + A     E+E  N
Sbjct: 339 GQEALNLFSEMERVN 353



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL++  ++      P+     SLI+ C +   L  G+ +H +   +  + GV++   L
Sbjct: 239 EEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +DMY+KCG+I DA  +F+ M  + + ++N+MI+     G  ++A NLF EM +
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMER 351



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 5/194 (2%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +Q+H  + R G          L+H+YS  G +  +  +F  +  P   +W  +I     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G+ ++AL  ++ ++  G   D   F  V+ ACT+   +D G +  H    K+G +     
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKYGFSGDVFV 162

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
              ++D   + G    A  V  KM ++ +   W +++ G    G+L  A+R  +   EI 
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRIFD---EIP 218

Query: 460 PENPATYVTMANIY 473
            +N  ++  M N Y
Sbjct: 219 SKNVVSWTAMINGY 232


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 169/466 (36%), Positives = 267/466 (57%), Gaps = 11/466 (2%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           + HQI  P+  +++++I+    N   ++  + +  ++S GF P  F    +L     C  
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVL---KACAR 124

Query: 77  ISDAQ------TLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           + D Q      TL  +   + DV    +++  + K G LE A  +FD++P ++  SWTA+
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           ISGY+   +  EA+D++R +    N   + FT+  VLSA + +  L  G+ IH  IM  G
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEM-NLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMG 243

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
              +  V ++L DMY KCG++ +AR +FD M ++D+VSW AMI  Y   G  +E   LF 
Sbjct: 244 MVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFL 303

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           ++ +  ++P+ +T  GVL+ACA   A ELG+ V G + R  +       +AL+ +Y+KCG
Sbjct: 304 QMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCG 363

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           ++  + +VF GM   D V W ++I+G A NG    +   F  + K G +PD   F+G+L 
Sbjct: 364 SMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLC 423

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
            CTHAGLVD+G +YF+S+     LT + +HY C+VDLL R+G   EA  +I  MPM+ + 
Sbjct: 424 GCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANA 483

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +W +LLG CRIH +  LA+ A + L E+EP N   YV ++NIY++
Sbjct: 484 IVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSA 529



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 7/268 (2%)

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           N  R +F ++   ++  W  MI         ++    +  +   G  PN FTF  VL AC
Sbjct: 63  NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A     +LG ++H  + + G+D   F  ++LV +Y+KCG +E++ KVF+ +P  ++VSWT
Sbjct: 123 ARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWT 182

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++I+GY   G   +A++ F  LL+    PD    V VL+ACT  G ++ G ++ H    +
Sbjct: 183 AIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG-EWIHKCIME 241

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
            G+         +VD+ A+ G   +A  V   MP K D   W +++ G  ++G   L K 
Sbjct: 242 MGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK-DIVSWGAMIQGYALNG---LPKE 297

Query: 451 AAEALFEIEPEN--PATYVTMANIYASA 476
           A +   +++ EN  P  Y  +  + A A
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACA 325



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 21/202 (10%)

Query: 12  KEALQILHQISHPS--PSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+ +  Q+   +  P  Y+   ++  C +  ALE G+ V   +  + F     +   L
Sbjct: 296 KEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTAL 355

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DN 123
           +D+YAKCG++S A  +F  M+E+D   +N +ISG    G ++ +  LF ++ +     D 
Sbjct: 356 IDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDG 415

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK---- 179
            ++  ++ G        E        + + NS+   F+L+  +     +  L LG+    
Sbjct: 416 NTFIGLLCGCTHAGLVDEG-------RRYFNSMYRFFSLTPSIEHYGCMVDL-LGRAGLL 467

Query: 180 -EIHGYIMRTGFDSDEVVWSAL 200
            E H  I     +++ +VW AL
Sbjct: 468 DEAHQLIRNMPMEANAIVWGAL 489


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 259/484 (53%), Gaps = 70/484 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S +  C     L  G ++H  +  S +   V++ + L+DMY+KC  ++ AQ       
Sbjct: 154 FGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQ------- 206

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                     FD+M  R+  SW ++I+ Y +     +AL+++  
Sbjct: 207 ------------------------RAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVR 242

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR-TGFDSDEVVWSALSDMYGKC 207
           M N      ++ TL+SV SA +++  +R G +IH  +M+   + +D V+ +AL DMY KC
Sbjct: 243 MMNC-GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKC 301

Query: 208 GSINEARQIFDKM-------------------------------VDRDVVSWTAMIGRYF 236
             +NEAR +FD+M                               ++R+VVSW A+I  Y 
Sbjct: 302 RRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYT 361

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH------GYMTRIG 290
           Q G  EE   LF  L +  I P  +TF  +LNACA+ A  +LG+Q H      G+  + G
Sbjct: 362 QNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSG 421

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
            D   F  ++L+ MY KCG VE+ + VF  M   D VSW ++I GYAQNG   +ALE F 
Sbjct: 422 EDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFR 481

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +L SG +PDH+  +GVL+AC+HAGLV++G  YF S+  +HGL    DHY C+VDLL R+
Sbjct: 482 EMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRA 541

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   EA ++I  MPM+PD  +W SLL  C++HGN+ L K  AE L EI+P N   YV ++
Sbjct: 542 GCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLS 601

Query: 471 NIYA 474
           N+YA
Sbjct: 602 NMYA 605



 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 146/463 (31%), Positives = 241/463 (52%), Gaps = 45/463 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +++  +S    S ++ L+  C +++++ E + VH+ +  + F   +FI N L+D+Y KCG
Sbjct: 9   KVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCG 68

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            + DA+ +FD MQ+R+  S+N ++   TK G+L++A NLF  MP+RD  SW AM+SG+ +
Sbjct: 69  FLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQ 128

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            ++  EAL     M + E+ V N+++  S LSA + +  L +G +IHG I ++ +  D  
Sbjct: 129 RDRFEEALRFVVDMHS-EDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVY 187

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + SAL DMY KC  +  A++ FD M  R++VSW ++I  Y Q G   +   +F  ++  G
Sbjct: 188 MGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG 247

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS---FAASALVHMYSKCGNVE 312
           I P+  T A V +ACA  +A   G Q+H  + +  +D Y       +ALV MY+KC  V 
Sbjct: 248 IEPDEITLASVASACASLSAIREGLQIHARVMK--HDKYRNDLVLGNALVDMYAKCRRVN 305

Query: 313 NSKKVFNGMPRPD-------------------------------LVSWTSLIAGYAQNGM 341
            ++ VF+ MP  D                               +VSW +LIAGY QNG 
Sbjct: 306 EARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGE 365

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            ++A+  F LL +    P H  F  +L AC +   +  G Q  H+   KHG  + +   +
Sbjct: 366 NEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQA-HTHILKHGFWFKSGEDS 424

Query: 402 CI------VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            I      +D+  + G   +   V  +M ++ D   W +++ G
Sbjct: 425 DIFVGNSLIDMYMKCGLVEDGRLVFERM-LERDNVSWNAMIVG 466



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 81/322 (25%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG--FKPG----VFISNCLLDMYAKCGNI 77
           P+   + +L+  C     L+ G++ H+H+   G  FK G    +F+ N L+DMY KCG +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
            D + +F+ M ERD  S+N MI G+ + G   +A  +F EM          ++SG     
Sbjct: 443 EDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREM----------LVSG----E 488

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK-EIHGYIMRTGFDSDEVV 196
           +P                  +  T+  VLSA S    +  G+       +  G    +  
Sbjct: 489 RP------------------DHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDH 530

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
           ++ + D+ G+ G ++EA  +   M                                   +
Sbjct: 531 YTCMVDLLGRAGCLDEANNLIQTM----------------------------------PM 556

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV-HMYSKCGNVENSK 315
            P+A  +  +L AC  H    LGK V   +  I  DP +     L+ +MY++ G  ++  
Sbjct: 557 EPDAVVWGSLLAACKVHGNITLGKYVAERLLEI--DPLNSGPYVLLSNMYAELGRWKDVV 614

Query: 316 KVFNGMPRPDLV-----SWTSL 332
           +V   M +  ++     SW S+
Sbjct: 615 RVRKQMRQMGVIKQPGCSWISI 636


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 285/546 (52%), Gaps = 76/546 (13%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L   R+ K+A  +   +      P    + SL++ C    ALE+GK+VH+ +K  G    
Sbjct: 281 LARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTE 340

Query: 61  VFISNCLLDM-------------------------------YAKCGNISDAQTLFDEMQE 89
           +++   LL M                               +A+ G + +A   F++M E
Sbjct: 341 IYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400

Query: 90  RDV-------------CSY--------------------------NTMISGFTKGGSLEQ 110
             +             CS                             ++S + K GSL  
Sbjct: 401 SGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMD 460

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           ARN+F+ + +++  +W AMI+ YV++ +   A+  ++ +   E    +  T +S+L+   
Sbjct: 461 ARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK-EGIKPDSSTFTSILNVCK 519

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
           +   L LGK +   I+R GF+SD  + +AL  M+  CG +  A  +F+ M +RD+VSW  
Sbjct: 520 SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNT 579

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           +I  + Q G  +  F  F  + +SG++P+  TF G+LNACA   A   G+++H  +T   
Sbjct: 580 IIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAA 639

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
            D      + L+ MY+KCG+++++  VF+ +P+ ++ SWTS+I GYAQ+G   +ALE F 
Sbjct: 640 LDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFC 699

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            + + G +PD I FVG L+AC HAGL+ +GL +F S+K+   +    +HY C+VDL  R+
Sbjct: 700 QMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRA 758

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G  HEA + I+KM +KPD  LW +LLG C++H +++LA++ A+   E++P +   YV ++
Sbjct: 759 GLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILS 818

Query: 471 NIYASA 476
           NIYA+A
Sbjct: 819 NIYAAA 824



 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 258/472 (54%), Gaps = 41/472 (8%)

Query: 10  RLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           +L EA+ +L  +  P   I    YSSL+Q C +++ L +G+++H+H+K S  +P +F+ N
Sbjct: 84  QLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWN 143

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ MYAKCGN + A+ +FDEM ++DV S+N ++ G+ +    E+A  L ++M Q     
Sbjct: 144 MLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQ----- 198

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                      +    +K+T   +L+A +  + +  G E+   I
Sbjct: 199 ---------------------------DGVKPDKYTFVYMLNACADAKNVDKGGELFSLI 231

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +  G+D+D  V +AL +M+ KCG +++A ++F+ +  RD+++WT+MI    +  + ++  
Sbjct: 232 LNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQAC 291

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF  + + G++P+   F  +L AC    A E GK+VH  M  +G D   +  +AL+ MY
Sbjct: 292 NLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMY 351

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG++E++ +VFN +   ++VSWT++IAG+AQ+G  ++A  +F  +++SG +P+ + F+
Sbjct: 352 TKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFM 411

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +L AC+    + +G Q  H    K G          ++ + A+ G   +A +V  ++  
Sbjct: 412 SILGACSRPSALKQGRQ-IHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS- 469

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
           K +   W +++     H   D A    +AL +  I+P++ +T+ ++ N+  S
Sbjct: 470 KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDS-STFTSILNVCKS 520



 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 230/436 (52%), Gaps = 11/436 (2%)

Query: 14  ALQILHQISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           A QI  ++  P   +YS   L+    Q+R  EE  ++H  +   G KP  +    +L+  
Sbjct: 158 AKQIFDEM--PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNAC 215

Query: 72  AKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           A   N+     LF  +     + D+     +I+   K G ++ A  +F+ +P+RD  +WT
Sbjct: 216 ADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWT 275

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI+G  R+ Q  +A +L+++M+  E    +K    S+L A +  + L  GK +H  +  
Sbjct: 276 SMITGLARHRQFKQACNLFQVMEE-EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKE 334

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G D++  V +AL  MY KCGS+ +A ++F+ +  R+VVSWTAMI  + Q GR EE F  
Sbjct: 335 VGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLF 394

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F+++I+SGI PN  TF  +L AC+  +A + G+Q+H  + + GY       +AL+ MY+K
Sbjct: 395 FNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAK 454

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG++ +++ VF  + + ++V+W ++I  Y Q+   D A+  F+ LLK G +PD   F  +
Sbjct: 455 CGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSI 514

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L  C     ++ G ++  S+  + G          +V +    G    A ++ + MP + 
Sbjct: 515 LNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPER- 572

Query: 428 DKFLWASLLGGCRIHG 443
           D   W +++ G   HG
Sbjct: 573 DLVSWNTIIAGFVQHG 588



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 15/279 (5%)

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           FD+  +  ++ S  Y K G  NE   I      ++     A + R  + G+  E   +  
Sbjct: 41  FDTFRLYTTSFSGSYSK-GQGNEFVDI------KNTQRANAFLNRLSKAGQLSEAMLVLL 93

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            +    I+ +  T++ +L  C  H     G+++H ++      P  F  + L+ MY+KCG
Sbjct: 94  SVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCG 153

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           N  ++K++F+ MP  D+ SW  L+ GY Q+   ++A    E +++ G +PD   FV +L 
Sbjct: 154 NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLN 213

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKP 427
           AC  A  VDKG + F  I       +  D +    ++++  + G   +A  V + +P + 
Sbjct: 214 ACADAKNVDKGGELFSLILNA---GWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRR- 269

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPA 464
           D   W S++ G   H     A    + + E  ++P+  A
Sbjct: 270 DLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVA 308


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 156/418 (37%), Positives = 253/418 (60%), Gaps = 10/418 (2%)

Query: 67  LLDMYAKCGNISD--------AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           +++++  C NI          + ++     +R+V   NT++  ++K G L  A  +F+ M
Sbjct: 355 MVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERM 414

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
            ++   SWT+MI+GYVR      A+ L+  M++    V + + ++S+L+A +    L+ G
Sbjct: 415 DEKTVVSWTSMITGYVREGLSDGAIKLFDEMKS-RGVVPDVYAVTSILNACAINGNLKSG 473

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K +H YI     +++  V +AL+DMY KCGS+ +A  +F  M  +DV+SW  MIG Y + 
Sbjct: 474 KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKN 533

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
               E   LF+E+ +   +P+  T A +L ACA  AA + G+++HGY  R GY    +  
Sbjct: 534 SLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVT 592

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +A+V MY KCG +  ++ +F+ +P  DLVSWT +IAGY  +G   +A+  F  +  +G +
Sbjct: 593 NAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIE 652

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD + F+ +L AC+H+GL+D+G + F+ +K++  +    +HYAC+VDLLAR+G   +A  
Sbjct: 653 PDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHK 712

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            I  MP+KPD  +W +LL GCRIH ++ LA++ AE +FE+EPEN   YV +ANIYA A
Sbjct: 713 FIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEA 770



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 229/471 (48%), Gaps = 40/471 (8%)

Query: 5   LCNQRRLKEALQIL--HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    LK A+++L   Q S+     Y S++Q C + +++ +G++V S ++SSG      
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGI 186

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           +   L+ MY KCG++ + + +FD++ E  +  +N MIS ++  G+  ++ NLF +M    
Sbjct: 187 LGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQM---- 242

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                               L+L            N +T SS+L   +A+  +  G+++H
Sbjct: 243 --------------------LEL--------GIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           G I + GF+S   V ++L   Y     +  A+++FD++ DRDV+SW +MI  Y + G  +
Sbjct: 275 GLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDD 334

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASAL 301
            G  +F +++  G+  +  T   V  ACA+     LGK +H Y  +    D      + L
Sbjct: 335 RGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTL 394

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + MYSKCG++ ++ +VF  M    +VSWTS+I GY + G+ D A++ F+ +   G  PD 
Sbjct: 395 LDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDV 454

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
                +L AC   G +  G +  H    ++ L   +     + D+ A+ G   +A DV S
Sbjct: 455 YAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFS 513

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
            M  K D   W +++GG   +    L   A     E++ E+     T+A I
Sbjct: 514 HMK-KKDVISWNTMIGG---YTKNSLPNEALTLFAEMQRESKPDGTTVACI 560



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 163/314 (51%), Gaps = 37/314 (11%)

Query: 26  PSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P +Y  +S++  C  N  L+ GK VH +++ +  +   F+SN L DMYAKCG++ DA  +
Sbjct: 452 PDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDV 511

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M+++DV S+NTMI G+TK     +A  LF EM                R ++P    
Sbjct: 512 FSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ---------------RESKP---- 552

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         +  T++ +L A +++  L  G+EIHGY +R G+  D+ V +A+ DM
Sbjct: 553 --------------DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDM 598

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  AR +FD + ++D+VSWT MI  Y   G   E    F+++  +GI P+  +F
Sbjct: 599 YVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSF 658

Query: 264 AGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L AC+     + G ++   M +    +P     + +V + ++ GN+  + K    MP
Sbjct: 659 ISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMP 718

Query: 323 -RPDLVSWTSLIAG 335
            +PD   W +L+ G
Sbjct: 719 IKPDATIWGALLCG 732



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 152/348 (43%), Gaps = 49/348 (14%)

Query: 13  EALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           EAL +  ++   S P  +  + ++  C    AL++G+++H +   +G+    +++N ++D
Sbjct: 538 EALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVD 597

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFS 125
           MY KCG +  A++LFD +  +D+ S+  MI+G+   G   +A N F++M     + D  S
Sbjct: 598 MYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVS 657

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQ---NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + +++          E   ++ +M+     E ++ +   +  +L+    +       + H
Sbjct: 658 FISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLV------KAH 711

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCG-SINEARQIFDKMVDR------DVVSWTAMIGRY 235
            +I       D  +W AL      CG  I+   ++ +K+ +R      +   +  ++   
Sbjct: 712 KFIKAMPIKPDATIWGALL-----CGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANI 766

Query: 236 FQEGRR-EEGFALFSELIKSGIRPNA----FTFAGVLNA-----CADHAA---EELGKQV 282
           + E  + EE   L  ++ + G++ N         G +N      C+   A   E L K++
Sbjct: 767 YAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRL 826

Query: 283 HGYMTRIGYDPYSFAASALVHMYSK------CGNVENSKKVFNGMPRP 324
              M   GY P +  A AL++   +      CG+ E     F  +  P
Sbjct: 827 RSKMKEEGYSPKT--AYALLNADEREKEVALCGHSEKLAMAFGMLNLP 872


>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
 gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
          Length = 506

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 171/473 (36%), Positives = 254/473 (53%), Gaps = 43/473 (9%)

Query: 12  KEALQILHQISHPSPSI------YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           +EA+++   +   SP +      Y++++  C    ALE+GK+VH  +  +GF+      N
Sbjct: 40  REAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAEN 99

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L++MYAKC                               GS+ +AR +FD M QR   S
Sbjct: 100 SLVNMYAKC-------------------------------GSITEAREVFDGMKQRTVVS 128

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WT +IS YVR   P EALDLYR M + E    N  T +SVLSA S++  L  GK +H  +
Sbjct: 129 WTGIISAYVRKGHPREALDLYRKMGS-EGVEPNGITFASVLSACSSLGALEEGKAVHAQM 187

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              G+  D  V +AL  +YGKCGS++ AR++FD+M  R+VVSWTAMI  Y      EE  
Sbjct: 188 KAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAI 247

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYSFAASALVH 303
            L+  +    + PNA T A VL+ACA     E G+ VH  +  T  G        +AL++
Sbjct: 248 QLYKAM---DVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLN 304

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+KCG+ + ++K+F+ M   D +SW++LIA Y Q+G   +A+E    +   G Q    +
Sbjct: 305 MYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFI 364

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           +  VLTAC+ AGL++    YF  +    G     + Y C+  +L R+GR  EAE++++ M
Sbjct: 365 YGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVM 424

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P + +   W  LL  C+ H +++   R AE LF +EP N A YV ++NIY +A
Sbjct: 425 PFEAEFVAWMGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAA 477



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 191/344 (55%), Gaps = 6/344 (1%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKF 160
           F K GSL+++R +FD+   +D   W +MI  Y +   P EA++L++ M +    V  N  
Sbjct: 2   FAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAI 61

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T ++VL+A SA++ L  GKE+H  ++  GF  D    ++L +MY KCGSI EAR++FD M
Sbjct: 62  TYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGM 121

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             R VVSWT +I  Y ++G   E   L+ ++   G+ PN  TFA VL+AC+   A E GK
Sbjct: 122 KQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGK 181

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
            VH  M   GY P    A+ALV +Y KCG+V++++KVF+ M   ++VSWT++I+ YA + 
Sbjct: 182 AVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHR 241

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE-KHGLTYTADH 399
             ++A++ ++ +      P+ +    VL+AC   G  ++G      +     GL      
Sbjct: 242 HSEEAIQLYKAM---DVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVL 298

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
              ++++ A+ G    A  +   M ++ D   W++L+     HG
Sbjct: 299 QNALLNMYAKCGDGDAARKIFDAMAVR-DTMSWSTLIAAYTQHG 341



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 131/236 (55%), Gaps = 4/236 (1%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNA 260
           M+ KCGS+ E+R++FD    +DV+ W +MI  Y Q G   E   LF  +  S   + PNA
Sbjct: 1   MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T+  VL AC+   A E GK+VH  M   G+   + A ++LV+MY+KCG++  +++VF+G
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDG 120

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M +  +VSWT +I+ Y + G P +AL+ +  +   G +P+ I F  VL+AC+  G +++G
Sbjct: 121 MKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEG 180

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            +  H+  +  G          +V L  + G    A  V  +M ++ +   W +++
Sbjct: 181 -KAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIR-NVVSWTAMI 234


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 267/470 (56%), Gaps = 11/470 (2%)

Query: 13  EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           +A+ +   I  P   ++S+LI    Q    EE  K+   ++     P  +    LL    
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 73  KCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
             GN+   Q++   +     E DV   N +++ + K G +     L++ M  RD  SW A
Sbjct: 427 NTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNA 486

Query: 129 MISGY---VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
            +SG      Y++P+     Y M++  E  + N +T  S+L + S +  +  G+++H +I
Sbjct: 487 YLSGLHDCGMYDRPLTIF--YHMLE--EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI 542

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++   D +  V +AL DMY KC  + +A   F+++  RD+ +WT +I  Y Q  + E+  
Sbjct: 543 IKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKAL 602

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
             F ++ + G++PN FT AG L+ C+  A+ E G+Q+H  + + G+    F  SALV MY
Sbjct: 603 NYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMY 662

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG +E ++ +F  + R D ++W ++I GYAQNG  +KAL  F ++L  G  PD + F 
Sbjct: 663 AKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFT 722

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G+L+AC+H GLV++G ++F+S+    G++ T DH AC+VD+L R G+F E ED I KM +
Sbjct: 723 GILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQL 782

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             +  +W ++LG  ++H NL L ++AA  LFE++PE  ++Y+ ++NI+A+
Sbjct: 783 SQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFAT 832



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 195/418 (46%), Gaps = 34/418 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           YSS+++ C   R+L   K +H  +      P   +   L+++YAKC              
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKC-------------- 160

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                 Y+              AR +  +MP RD  SWTA+I G V      +++ L++ 
Sbjct: 161 -----RYSAY------------ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           MQN E  + N+FTL++ L A S    L LGK++H    + G   D  V SAL D+Y KCG
Sbjct: 204 MQN-EGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I  A ++F  M +++ V+W  ++  Y Q G       LF  +++  ++ N FT   VL 
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            CA+    + G+ +H  + + GY+   F    LV MYSKCG   ++  VF  + +PD+V 
Sbjct: 323 GCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVV 382

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W++LI    Q G  +++++ F L+    T P+      +L+A T+ G +  G Q  H+  
Sbjct: 383 WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACV 441

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
            K+G          +V +  ++G  H+   +   M +  D   W + L G    G  D
Sbjct: 442 WKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMYD 498



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 202/416 (48%), Gaps = 40/416 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++ ++ C    AL+ GK++H+     G    +F+ + L+D+YAKCG I      
Sbjct: 211 PNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI------ 264

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                    E A  +F  MP++++ +W  +++GY +       L
Sbjct: 265 -------------------------ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVL 299

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M   +    N+FTL++VL   +  + L+ G+ IH  I++ G++ +E +   L DM
Sbjct: 300 KLFCSMMELDVKC-NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM 358

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG   +A  +F  +   D+V W+A+I    Q+G+ EE   LF  +      PN +T 
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L+A  +    + G+ +H  + + G++     ++ALV MY K G V +  K++  M  
Sbjct: 419 CSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVD 478

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ- 382
            DL+SW + ++G    GM D+ L  F  +L+ G  P+   F+ +L +C+    V  G Q 
Sbjct: 479 RDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQV 538

Query: 383 YFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           + H IK +       +++ C  ++D+ A+     +A+   +++ ++ D F W  ++
Sbjct: 539 HAHIIKNQ----LDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVII 589


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 266/454 (58%), Gaps = 25/454 (5%)

Query: 24   PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
            P+ S +   I+ C     L  G+  H      GF+  +F+S+ L+DMY+KCG + DA+ L
Sbjct: 1140 PTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARAL 1199

Query: 84   FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            FDE+  R+V S+ +MI+G+ +    + A  LF +  + +    T +  G    N P++++
Sbjct: 1200 FDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEE----TEVEDG---NNVPLDSV 1252

Query: 144  DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                              + SVLSA S +    + + +HG++++ GFD    V + L D 
Sbjct: 1253 -----------------VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295

Query: 204  YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFT 262
            Y KCG    ++++FD M ++D +SW +MI  Y Q G   E   +F  +++  G+R NA T
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355

Query: 263  FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             + VL ACA   A   GK +H  + ++  +      ++++ MY KCG VE +KK F+ M 
Sbjct: 1356 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 1415

Query: 323  RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              ++ SWT+++AGY  +G   +AL+ F  ++++G +P++I FV VL AC+HAGLV++G  
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 1475

Query: 383  YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            +F+++K K+ +    +HY C+VDL  R+G  +EA ++I +M MKPD  +W SLLG CRIH
Sbjct: 1476 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 1535

Query: 443  GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             N+DL + AA+ LFE++P+N   YV ++N+YA A
Sbjct: 1536 KNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADA 1569



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 166/286 (58%), Gaps = 2/286 (0%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +I+ C    +++ GK VH  L   GF   VF+ N L+D Y KCG+   A  +F++M+ R+
Sbjct: 131 VIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRN 190

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V S+ T+ISG    G L++AR +FDE+P ++  SWTAMI+GY+R  QP EAL+L++ MQ 
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            EN   N++T+ S++ A + +  L LG+ IH Y ++   +    + +AL DMY KCGSI 
Sbjct: 251 -ENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A ++F+ M  + + +W +MI      G  +E   LFSE+ +  ++P+A TF GVL AC 
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACV 369

Query: 272 DHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKK 316
                + G      MT+  G  P       +  +Y++  N++ + K
Sbjct: 370 HIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 190/416 (45%), Gaps = 66/416 (15%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L+Q C+  + L   +++H+ +  SG      ++  L+ +Y+  G I+ A  LF ++Q   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
             ++N +I   T  G  EQA  L+  M                   Q I A         
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNM-----------------VCQGIAA--------- 123

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                 +KFT   V+ A +    + LGK +HG +++ GF  D  V + L D Y KCG   
Sbjct: 124 ------DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 212 EARQIFDKMVDRDVVSW-------------------------------TAMIGRYFQEGR 240
            A ++F+KM  R+VVSW                               TAMI  Y +  +
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF  +    I PN +T   ++ AC +     LG+ +H Y  +   +   +  +A
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MYSKCG+++++ +VF  MPR  L +W S+I     +G+  +AL  F  + +   +PD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            I F+GVL AC H   V +G  YF  + + +G+    +HY C+ +L ARS    EA
Sbjct: 358 AITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 182/361 (50%), Gaps = 16/361 (4%)

Query: 125  SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
            SW ++I+   R    +EAL  +  ++     +  + +    + + SA+  L  G+  H  
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKL-GLIPTRSSFPCTIKSCSALCDLVSGRMSHQQ 1167

Query: 185  IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
                GF++D  V SAL DMY KCG + +AR +FD++  R+VVSWT+MI  Y Q  + +  
Sbjct: 1168 AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 1227

Query: 245  FALFSELIK--------SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
              LF + ++        + +  ++     VL+AC+  + + + + VHG++ + G+D    
Sbjct: 1228 LLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIG 1287

Query: 297  AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS- 355
              + L+  Y+KCG    SKKVF+ M   D +SW S+IA YAQ+G+  +ALE F  +++  
Sbjct: 1288 VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHV 1347

Query: 356  GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
            G + + +    VL AC HAG +  G +  H    K  L Y       I+D+  + GR   
Sbjct: 1348 GVRYNAVTLSAVLLACAHAGALRAG-KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEM 1406

Query: 416  AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE-IEPENPATYVTMANIYA 474
            A+    +M  K  K  W +++ G  +HG    AK A +  ++ +       Y+T  ++ A
Sbjct: 1407 AKKTFDRMKEKNVKS-WTAMVAGYGMHGR---AKEALDIFYKMVRAGVKPNYITFVSVLA 1462

Query: 475  S 475
            +
Sbjct: 1463 A 1463



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 145/315 (46%), Gaps = 36/315 (11%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++IH  I+R+G  +D+++   L  +Y   G I  A  +F ++ +    +W  +I      
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  E+   L+  ++  GI  + FTF  V+ AC +  + +LGK VHG + + G+    F  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 299 SALVHMYSKCG-------------------------------NVENSKKVFNGMPRPDLV 327
           + L+  Y KCG                               +++ ++++F+ +P  ++V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SWT++I GY +N  P++ALE F+ +      P+    V ++ ACT  G++  G +  H  
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-RGIHDY 282

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             K+ +         ++D+ ++ G   +A +V   MP K     W S++    +HG   L
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP-TWNSMITSLGVHG---L 338

Query: 448 AKRAAEALFEIEPEN 462
            + A     E+E  N
Sbjct: 339 GQEALNLFSEMERVN 353



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 13/231 (5%)

Query: 217  FDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            F K VD+ +V SW ++I    + G   E    FS L K G+ P   +F   + +C+    
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 276  EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
               G+  H      G++   F +SAL+ MYSKCG +++++ +F+ +P  ++VSWTS+I G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 336  YAQNGMPDKALEYFELLLKSGTQP--------DHIVFVGVLTACTHAGLVDKGL-QYFHS 386
            Y QN   D AL  F+  L+  T+         D +V V VL+AC+      KG+ +  H 
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVS--GKGITEGVHG 1275

Query: 387  IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
               K G   +      ++D  A+ G+   ++ V   M  K D   W S++ 
Sbjct: 1276 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK-DDISWNSMIA 1325



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL++  ++      P+     SLI+ C +   L  G+ +H +   +  + GV++   L
Sbjct: 239 EEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           +DMY+KCG+I DA  +F+ M  + + ++N+MI+     G  ++A NLF EM
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM 349



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 5/194 (2%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +Q+H  + R G          L+H+YS  G +  +  +F  +  P   +W  +I     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G+ ++AL  ++ ++  G   D   F  V+ ACT+   +D G +  H    K+G +     
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKYGFSGDVFV 162

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
              ++D   + G    A  V  KM ++ +   W +++ G    G+L  A+R  +   EI 
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRIFD---EIP 218

Query: 460 PENPATYVTMANIY 473
            +N  ++  M N Y
Sbjct: 219 SKNVVSWTAMINGY 232


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 269/473 (56%), Gaps = 34/473 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D L N  R+   +QI   +  P+   Y S+++ C +   LE G+++HS +  + F+   
Sbjct: 428 LDDLRNSFRIFRQMQIEEIV--PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           ++ + L+DMYAK G                                L+ A ++      +
Sbjct: 486 YVCSVLIDMYAKLGK-------------------------------LDTAWDILIRFAGK 514

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  SWT MI+GY +YN   +AL  +R M +     S++  L++ +SA + +Q L+ G++I
Sbjct: 515 DVVSWTTMIAGYTQYNFDDKALTTFRQMLD-RGIRSDEVGLTNAVSACAGLQALKEGQQI 573

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H     +GF SD    +AL  +Y +CG I E+   F++    D ++W A++  + Q G  
Sbjct: 574 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 633

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   +F  + + GI  N FTF   + A ++ A  + GKQVH  +T+ GYD  +   +AL
Sbjct: 634 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 693

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + MY+KCG++ +++K F  +   + VSW ++I  Y+++G   +AL+ F+ ++ S  +P+H
Sbjct: 694 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 753

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           +  VGVL+AC+H GLVDKG+ YF S+  ++GL+   +HY C+VD+L R+G    A++ I 
Sbjct: 754 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 813

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +MP+KPD  +W +LL  C +H N+++ + AA  L E+EPE+ ATYV ++N+YA
Sbjct: 814 EMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 866



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 195/428 (45%), Gaps = 34/428 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P  +SS++  C++  +LE G+++H  +   GF    ++ N L+ +Y   GN+  A+  
Sbjct: 246 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE-- 303

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                        ++F  M QRD  ++  +I+G  +     +A+
Sbjct: 304 -----------------------------HIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 334

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M + +    +  TL+S++ A SA   L  G+++H Y  + GF S+  +  AL ++
Sbjct: 335 ELFKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 393

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  I  A   F +    +VV W  M+  Y         F +F ++    I PN +T+
Sbjct: 394 YAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 453

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C      ELG+Q+H  + +  +   ++  S L+ MY+K G ++ +  +      
Sbjct: 454 PSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 513

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWT++IAGY Q    DKAL  F  +L  G + D +     ++AC     + +G Q 
Sbjct: 514 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQ 572

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+     G +        +V L +R G+  E+     +     D   W +L+ G +  G
Sbjct: 573 IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE-AGDNIAWNALVSGFQQSG 631

Query: 444 NLDLAKRA 451
           N + A R 
Sbjct: 632 NNEEALRV 639



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 194/415 (46%), Gaps = 36/415 (8%)

Query: 24  PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+      L++ C + N +L+EG+K+HS +   G      +S  L D Y           
Sbjct: 42  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY----------- 90

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF                     G L  A  +FDEMP+R  F+W  MI      N   E 
Sbjct: 91  LFK--------------------GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV 130

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAV-SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
             L+  M + EN   N+ T S VL A         + ++IH  I+  G     VV + L 
Sbjct: 131 FGLFVRMVS-ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLI 189

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y + G ++ AR++FD +  +D  SW AMI    +     E   LF ++   GI P  +
Sbjct: 190 DLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPY 249

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
            F+ VL+AC    + E+G+Q+HG + ++G+   ++  +ALV +Y   GN+ +++ +F+ M
Sbjct: 250 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 309

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
            + D V++ +LI G +Q G  +KA+E F+ +   G +PD      ++ AC+  G + +G 
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG- 368

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           Q  H+   K G          +++L A+      A D   +  ++ +  LW  +L
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVML 422


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 270/476 (56%), Gaps = 6/476 (1%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C  RRL  A  +  +I       +++LI    ++    E   +   ++ SG +P  F  +
Sbjct: 195 CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFS 254

Query: 66  CLLDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            +L       + +  Q L          RD    N ++  ++K   + + R LFDEMP+ 
Sbjct: 255 GVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPEL 314

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  S+  +IS Y + +Q   +L  +R MQ       N F  +++LS  + +  L++G+++
Sbjct: 315 DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQMGRQL 373

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H   +    DS   V ++L DMY KC    EA  IF  +  R  VSWTA+I  Y Q+G  
Sbjct: 374 HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLH 433

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
             G  LF+++  S +R +  TFA VL A A  A+  LGKQ+H ++ R G     F+ S L
Sbjct: 434 GAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V MY+KCG+++++ +VF  MP  + VSW +LI+ +A NG  + A+  F  +++SG QPD 
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           +  +GVLTAC+H G V++G +YF ++   +G+T    HYAC++DLL R+GRF EAE ++ 
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 613

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
           +MP +PD+ +W+S+L  CRIH N  LA+RAAE LF +E   + A YV+M+NIYA+A
Sbjct: 614 EMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAA 669



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 214/445 (48%), Gaps = 27/445 (6%)

Query: 2   IDILCNQRRLK-EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           + + CN   ++   L  L Q+  PSP+ +              + ++V + +  +GF   
Sbjct: 1   MKLYCNSNEVRSRTLATLRQLRQPSPATFL-------------DTRRVDARIIKTGFDTD 47

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
              SN +++   + G +S A+ ++DEM  ++  S NTMISG  K G +  AR+LFD MP 
Sbjct: 48  TCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPD 107

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMM-QNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           R   +WT ++  Y R +   EA  L+R M ++   ++ +  T +++L   +         
Sbjct: 108 RTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVG 167

Query: 180 EIHGYIMRTGFDSDE--VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           ++H + ++ GFD++    V + L   Y +   ++ A  +F+++ ++D V++  +I  Y +
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G   E   LF ++ +SG +P+ FTF+GVL A        LG+Q+H      G+   +  
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASV 287

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            + ++  YSK   V  ++ +F+ MP  D VS+  +I+ Y+Q    + +L +F  +   G 
Sbjct: 288 GNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF 347

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA----CIVDLLARSGRF 413
              +  F  +L+   +   +  G Q  H       L  TAD        +VD+ A+   F
Sbjct: 348 DRRNFPFATMLSIAANLSSLQMGRQ-LHC----QALLATADSILHVGNSLVDMYAKCEMF 402

Query: 414 HEAEDVISKMPMKPDKFLWASLLGG 438
            EAE +   +P +     W +L+ G
Sbjct: 403 EEAELIFKSLPQRT-TVSWTALISG 426


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/515 (35%), Positives = 263/515 (51%), Gaps = 72/515 (13%)

Query: 2   IDILCNQRRLKEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           I  L    R  EA+Q  +   H     P   +  S+ + C   R +   K+VH      G
Sbjct: 49  ISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFG 108

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
           F   V + N L+DMY KC                  CS              E AR +F+
Sbjct: 109 FCSDVLLGNALIDMYGKCR-----------------CS--------------EGARLVFE 137

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
            MP RD  SWT+M S YV      EAL  +R M        N  T+SS+L A + ++ L+
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKM-GLNGERPNSVTVSSILPACTDLKDLK 196

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            G+E+HG+++R G   +  V SAL +MY  C SI +A+ +FD M  RD VSW  +I  YF
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 237 -----------------------------------QEGRREEGFALFSELIKSGIRPNAF 261
                                              Q GR E+   + S +  SG +PN  
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   VL AC +  +   GKQ+HGY+ R  +       +ALV MY+KCG++E S++VF+ M
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM 376

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
            + D VSW ++I   + +G  ++AL  F  ++ SG +P+ + F GVL+ C+H+ LVD+GL
Sbjct: 377 TKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGL 436

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
             F S+   H +   ADH++C+VD+L+R+GR  EA + I KMP++P    W +LLGGCR+
Sbjct: 437 LIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRV 496

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + N++L + AA  LFEIE +NP  YV ++NI  SA
Sbjct: 497 YKNVELGRIAANRLFEIESDNPGNYVLLSNILVSA 531



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSG 356
           A   + +YS  G+++ ++ +F+ +P+PDL +WT LI+   ++G   +A++Y+ +   K+ 
Sbjct: 14  ALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNC 73

Query: 357 TQPDHIVFVGVLTACTHAGLVD-KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
            +PD ++ + V  AC  A L D    +  H    + G          ++D+  +      
Sbjct: 74  VEPDKLLLLSVAKAC--ASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEG 131

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
           A  V   MP + D   W S +  C ++  L      A     +  E P + VT+++I
Sbjct: 132 ARLVFEGMPFR-DVISWTS-MASCYVNCGLLREALGAFRKMGLNGERPNS-VTVSSI 185


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 267/470 (56%), Gaps = 11/470 (2%)

Query: 13  EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           +A+ +   I  P   ++S+LI    Q    EE  K+   ++     P  +    LL    
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 73  KCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
             GN+   Q++   +     E DV   N +++ + K G +     L++ M  RD  SW A
Sbjct: 427 NTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNA 486

Query: 129 MISGY---VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
            +SG      Y++P+     Y M++  E  + N +T  S+L + S +  +  G+++H +I
Sbjct: 487 YLSGLHDCGMYDRPLTIF--YHMLE--EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI 542

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++   D +  V +AL DMY KC  + +A   F+++  RD+ +WT +I  Y Q  + E+  
Sbjct: 543 IKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKAL 602

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
             F ++ + G++PN FT AG L+ C+  A+ E G+Q+H  + + G+    F  SALV MY
Sbjct: 603 NYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMY 662

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG +E ++ +F  + R D ++W ++I GYAQNG  +KAL  F ++L  G  PD + F 
Sbjct: 663 AKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFT 722

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G+L+AC+H GLV++G ++F+S+    G++ T DH AC+VD+L R G+F E ED I KM +
Sbjct: 723 GILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQL 782

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             +  +W ++LG  ++H NL L ++AA  LFE++PE  ++Y+ ++NI+A+
Sbjct: 783 SQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFAT 832



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 195/418 (46%), Gaps = 34/418 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           YSS+++ C   R+L   K +H  +      P   +   L+++YAKC              
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKC-------------- 160

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                 Y+              AR +  +MP RD  SWTA+I G V      +++ L++ 
Sbjct: 161 -----RYSAY------------ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           MQN E  + N+FTL++ L A S    L LGK++H    + G   D  V SAL D+Y KCG
Sbjct: 204 MQN-EGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I  A ++F  M +++ V+W  ++  Y Q G       LF  +++  ++ N FT   VL 
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            CA+    + G+ +H  + + GY+   F    LV MYSKCG   ++  VF  + +PD+V 
Sbjct: 323 GCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVV 382

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W++LI    Q G  +++++ F L+    T P+      +L+A T+ G +  G Q  H+  
Sbjct: 383 WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACV 441

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
            K+G          +V +  ++G  H+   +   M +  D   W + L G    G  D
Sbjct: 442 WKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMYD 498



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 202/416 (48%), Gaps = 40/416 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++ ++ C    AL+ GK++H+     G    +F+ + L+D+YAKCG I      
Sbjct: 211 PNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI------ 264

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                    E A  +F  MP++++ +W  +++GY +       L
Sbjct: 265 -------------------------ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVL 299

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M   +    N+FTL++VL   +  + L+ G+ IH  I++ G++ +E +   L DM
Sbjct: 300 KLFCSMMELDVKC-NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM 358

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG   +A  +F  +   D+V W+A+I    Q+G+ EE   LF  +      PN +T 
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L+A  +    + G+ +H  + + G++     ++ALV MY K G V +  K++  M  
Sbjct: 419 CSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVD 478

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ- 382
            DL+SW + ++G    GM D+ L  F  +L+ G  P+   F+ +L +C+    V  G Q 
Sbjct: 479 RDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQV 538

Query: 383 YFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           + H IK +       +++ C  ++D+ A+     +A+   +++ ++ D F W  ++
Sbjct: 539 HAHIIKNQ----LDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVII 589


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/481 (35%), Positives = 265/481 (55%), Gaps = 41/481 (8%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  LC+  RL+EAL    +++   P +    Y +L+  C   RAL +G++VH+H+  + +
Sbjct: 27  ISQLCSNGRLQEALL---EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRY 83

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
            P  ++   LL  Y KC                                 LE AR + DE
Sbjct: 84  LPATYLRTRLLIFYGKCD-------------------------------CLEDARKVLDE 112

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+++  SWTAMIS Y +     EAL ++  M   +    N+FT ++VL++      L L
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGK-PNEFTFATVLTSCIRASGLGL 171

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK+IHG I++  +DS   V S+L DMY K G I EAR+IF+ + +RDVVS TA+I  Y Q
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  EE   +F  L   G+ PN  T+A +L A +  A  + GKQ H ++ R     Y+  
Sbjct: 232 LGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL 291

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSG 356
            ++L+ MYSKCGN+  ++++F+ MP    +SW +++ GY+++G+  + LE F L+  +  
Sbjct: 292 QNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR 351

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHS-IKEKHGLTYTADHYACIVDLLARSGRFHE 415
            +PD +  + VL+ C+H  + D GL  F   +  ++G     +HY CIVD+L R+GR  E
Sbjct: 352 VKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDE 411

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A + I +MP KP   +  SLLG CR+H ++D+ +     L EIEPEN   YV ++N+YAS
Sbjct: 412 AFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYAS 471

Query: 476 A 476
           A
Sbjct: 472 A 472


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 250/435 (57%), Gaps = 32/435 (7%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  G+ +H+     GF    F++N L  MY KCG                         
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGK------------------------ 267

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
                  L+   + F +M   D  SWT +++ Y++  +    L  ++ M+   N + N++
Sbjct: 268 -------LDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRA-SNVIPNEY 319

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T S+V+S  +    L+ G+++H +++  GF +   V +++  +Y KCG +    ++F  M
Sbjct: 320 TFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSM 379

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             RD+++W+ +I  Y Q G  EE F   S +   G +PN F  A VL+ C   A  E GK
Sbjct: 380 KFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGK 439

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H ++  +G +  S   SAL+ MY+KCG++  + K+F    + D++SWT++I+GYA++G
Sbjct: 440 QLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHG 499

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +A+E FE + K G +PD + F+GVLTAC+HAG+VD G  YF+S+ + + +T + +HY
Sbjct: 500 HSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHY 559

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
            C++DLL R+GR H+AE +I  MP++ D  +W++LL  CRIHG++D  +RAA  + +++P
Sbjct: 560 GCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDP 619

Query: 461 ENPATYVTMANIYAS 475
               T++T+ANI+A+
Sbjct: 620 NCAGTHITLANIFAA 634



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 211/453 (46%), Gaps = 45/453 (9%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           L ++ RL+  L+I        P + S  ++ C        G  +H      G    VF+ 
Sbjct: 102 LFSKMRLQSELRI-------DPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVG 154

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           + LLDMY K G I                                ++  +FDEMP R+  
Sbjct: 155 SALLDMYMKIGEIG-------------------------------RSCKVFDEMPTRNAV 183

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA+I+G VR       L  +  M   +    + +  +  L A +    L  G+ IH  
Sbjct: 184 TWTAVITGLVRAGYSEAGLAYFSGMGRSKVEY-DSYAYAIALKASADSGALNHGRSIHTQ 242

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++ GFD +  V ++L+ MY KCG ++     F KM   DVVSWT ++  Y Q G+ + G
Sbjct: 243 TLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCG 302

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
              F  +  S + PN +TF+ V++ CA+ A  + G+Q+H ++  +G+      A++++ +
Sbjct: 303 LQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTL 362

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YSKCG + +  KVF  M   D+++W+++IA Y+Q G  ++A EY   +   G +P+    
Sbjct: 363 YSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFAL 422

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             VL+ C    ++++G Q  H+     GL  T+   + ++ + A+ G   EA  +     
Sbjct: 423 ASVLSVCGSMAILEQGKQ-LHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMD-S 480

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            K D   W +++ G   HG+     + A  LFE
Sbjct: 481 WKDDIISWTAMISGYAEHGH----SQEAIELFE 509



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 178/373 (47%), Gaps = 5/373 (1%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+   N  +    K   L+ AR+LFD++PQRD  SWT +ISGYV  +   EAL L+  M+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                  + F LS  L           G  +HG+ ++ G  +   V SAL DMY K G I
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEI 167

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             + ++FD+M  R+ V+WTA+I    + G  E G A FS + +S +  +++ +A  L A 
Sbjct: 168 GRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKAS 227

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           AD  A   G+ +H    + G+D  SF A++L  MY+KCG ++     F  M   D+VSWT
Sbjct: 228 ADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWT 287

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +++  Y Q G  D  L+ F+ +  S   P+   F  V++ C +   +  G Q  H+    
Sbjct: 288 TIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ-LHAHVLC 346

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
            G          I+ L ++ G       V   M  + D   W++++     +  +   + 
Sbjct: 347 VGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFR-DIITWSTIIAA---YSQVGYGEE 402

Query: 451 AAEALFEIEPENP 463
           A E L  +  E P
Sbjct: 403 AFEYLSRMRSEGP 415



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 155/312 (49%), Gaps = 34/312 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +S++I  C     L+ G+++H+H+   GF   + ++N ++ +Y+KCG ++    +
Sbjct: 316 PNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKV 375

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M+ RD+ +++T+I+ +++ G  E+A      M                         
Sbjct: 376 FCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS----------------------- 412

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                    E    N+F L+SVLS   ++  L  GK++H +++  G +   +V SAL  M
Sbjct: 413 ---------EGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIM 463

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGSI EA +IF      D++SWTAMI  Y + G  +E   LF  + K G+RP++ TF
Sbjct: 464 YAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTF 523

Query: 264 AGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            GVL AC+     +LG      M++     P       ++ +  + G + +++ +   MP
Sbjct: 524 IGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMP 583

Query: 323 -RPDLVSWTSLI 333
            + D V W++L+
Sbjct: 584 IQWDDVVWSTLL 595



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 12  KEALQILHQISH--PSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA + L ++    P P+ ++  S++  C     LE+GK++H+H+ S G +    + + L
Sbjct: 401 EEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSAL 460

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + MYAKCG+I++A  +F +  + D+ S+  MISG+ + G  ++A  LF+ + +
Sbjct: 461 IIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQK 513


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 175/468 (37%), Positives = 272/468 (58%), Gaps = 44/468 (9%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGN----ISDAQTLFDEMQERDVCSYNTMISGF 102
           + H+    SG      +SN L+ +Y++C +    +  A+ +FD++ E+D  S+ TM++G+
Sbjct: 170 QFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGY 229

Query: 103 TKGGSLEQARNLFDEMPQRDNF-SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
            K G  +  + L   M +     ++ AMISGYV      EAL++ R M +    + ++FT
Sbjct: 230 VKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIEL-DEFT 288

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRT---GFDSDEVVWSALSDMYGKCGSINEARQIFD 218
             SV+ A +  + L+LGK++H Y++R     F  D    ++L  +Y KCG  NEAR IF+
Sbjct: 289 YPSVIRACANARLLQLGKQVHAYVLRREDFSFHFD----NSLVTLYYKCGKFNEARAIFE 344

Query: 219 KMVDRDVVSWTAMIGRY------------FQE-------------------GRREEGFAL 247
           KM  +D+VSW A++  Y            F+E                   G  EEG  L
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           FS + + G  P  + F+G + +CA   A   G+Q H  + +IG+D    A +AL+ MY+K
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAK 464

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG VE +++VF  MP  D VSW +LIA   Q+G   +A++ +E +LK G +PD I F+ V
Sbjct: 465 CGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTV 524

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTAC+HAGLVD+G +YF+S++  + +   ADHYA ++DLL RSG+F EAE +I  +P KP
Sbjct: 525 LTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKP 584

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
              +W +LL GCR+HGN++L   AA+ LF + PE+  TY+ ++N+YA+
Sbjct: 585 TAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAA 632



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 233/506 (46%), Gaps = 93/506 (18%)

Query: 23  HPSPSI-------YSSLIQFCRQNR--ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
            P+P +       Y++ ++ C   R  +L+  + VH ++ + GF+P   I N L+D+Y K
Sbjct: 2   QPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCK 61

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMIS 131
              +  A+ LFDE+ E D  +  TM+SG+   G +  AR++F+E P   RD   + AMI+
Sbjct: 62  SSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMIT 121

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI-----QCLRLGKEIHGYIM 186
           G+   N    A++L+  M++ E    + FT +SVL+ ++ +     QC+    + H   +
Sbjct: 122 GFSHNNDGYSAINLFCKMKH-EGFKPDDFTYASVLAGLALVVDDEKQCV----QFHAAAL 176

Query: 187 RTGFDSDEVVWSALSDMYGKCGS----INEARQIFDKMVDRDVVSWT------------- 229
           ++G      V +AL  +Y +C S    ++ AR++FD + ++D  SWT             
Sbjct: 177 KSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFD 236

Query: 230 -------------------AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
                              AMI  Y   G  +E   +   ++ SGI  + FT+  V+ AC
Sbjct: 237 LGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRAC 296

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           A+    +LGKQVH Y+ R   + +SF   ++LV +Y KCG    ++ +F  MP  DLVSW
Sbjct: 297 ANARLLQLGKQVHAYVLR--REDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSW 354

Query: 330 TSLIAGY-------------------------------AQNGMPDKALEYFELLLKSGTQ 358
            +L++GY                               A+NG  ++ L+ F  + + G +
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P    F G + +C   G    G Q FH+   K G   +      ++ + A+ G   EA+ 
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNG-QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQ 473

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGN 444
           V   MP   D   W +L+     HG+
Sbjct: 474 VFRTMPCL-DSVSWNALIAALGQHGH 498



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 173/340 (50%), Gaps = 18/340 (5%)

Query: 12  KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNC 66
           +EAL+++ ++      +    Y S+I+ C   R L+ GK+VH++ L+   F       N 
Sbjct: 268 QEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFS--FHFDNS 325

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ +Y KCG  ++A+ +F++M  +D+ S+N ++SG+   G + +A+ +F EM +++  SW
Sbjct: 326 LVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             MISG        E L L+  M+  E      +  S  + + + +     G++ H  ++
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKR-EGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLV 444

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + GFDS     +AL  MY KCG + EA+Q+F  M   D VSW A+I    Q G   E   
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVD 504

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-----GYDPYSFAASAL 301
           ++ E++K GIRP+  TF  VL AC+     + G++    M  +     G D Y    + L
Sbjct: 505 VYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHY----ARL 560

Query: 302 VHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
           + +  + G    ++ +   +P +P    W +L++G   +G
Sbjct: 561 IDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHG 600



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 23/249 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + EA  I  ++   +   +  +I    +N   EEG K+ S +K  GF+P  +  +  +  
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426

Query: 71  YAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
            A  G   + Q    ++     +  + + N +I+ + K G +E+A+ +F  MP  D+ SW
Sbjct: 427 CAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSW 486

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            A+I+   ++   +EA+D+Y  M   +    ++ T  +VL+A S    +  G        
Sbjct: 487 NALIAALGQHGHGVEAVDVYEEMLK-KGIRPDRITFLTVLTACSHAGLVDQG-------- 537

Query: 187 RTGFDSDEVV---------WSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYF 236
           R  F+S E V         ++ L D+  + G  +EA  I + +  +     W A++    
Sbjct: 538 RKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCR 597

Query: 237 QEGRREEGF 245
             G  E G 
Sbjct: 598 VHGNMELGI 606


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 250/435 (57%), Gaps = 32/435 (7%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  G+ +H+     GF    F++N L  MY KCG                         
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGK------------------------ 267

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
                  L+   + F +M   D  SWT +++ Y++  +    L  ++ M+   N + N++
Sbjct: 268 -------LDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRA-SNVIPNEY 319

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T S+V+S  +    L+ G+++H +++  GF +   V +++  +Y KCG +    ++F  M
Sbjct: 320 TFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSM 379

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             RD+++W+ +I  Y Q G  EE F   S +   G +PN F  A VL+ C   A  E GK
Sbjct: 380 KFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGK 439

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H ++  +G +  S   SAL+ MY+KCG++  + K+F    + D++SWT++I+GYA++G
Sbjct: 440 QLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHG 499

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +A+E FE + K G +PD + F+GVLTAC+HAG+VD G  YF+S+ + + +T + +HY
Sbjct: 500 HSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHY 559

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
            C++DLL R+GR H+AE +I  MP++ D  +W++LL  CRIHG++D  +RAA  + +++P
Sbjct: 560 GCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDP 619

Query: 461 ENPATYVTMANIYAS 475
               T++T+ANI+A+
Sbjct: 620 NCAGTHITLANIFAA 634



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 212/453 (46%), Gaps = 45/453 (9%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           L ++ RL+  L+I        P + S  ++ C        G  +H     +G    VF+ 
Sbjct: 102 LFSKMRLQSELRI-------DPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVG 154

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           + LLDMY K G I                                ++  +FDEMP R+  
Sbjct: 155 SALLDMYMKIGEIG-------------------------------RSCKVFDEMPTRNAV 183

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA+I+G VR       L  +  M   +    + +  +  L A +    L  G+ IH  
Sbjct: 184 TWTAVITGLVRAGYSEAGLAYFSGMGRSKVEY-DSYAYAIALKASADSGALNHGRSIHTQ 242

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++ GFD +  V ++L+ MY KCG ++     F KM   DVVSWT ++  Y Q G+ + G
Sbjct: 243 TLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCG 302

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
              F  +  S + PN +TF+ V++ CA+ A  + G+Q+H ++  +G+      A++++ +
Sbjct: 303 LQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTL 362

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YSKCG + +  KVF  M   D+++W+++IA Y+Q G  ++A EY   +   G +P+    
Sbjct: 363 YSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFAL 422

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             VL+ C    ++++G Q  H+     GL  T+   + ++ + A+ G   EA  +     
Sbjct: 423 ASVLSVCGSMAILEQGKQ-LHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMD-S 480

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            K D   W +++ G   HG+     + A  LFE
Sbjct: 481 WKDDIISWTAMISGYAEHGH----SQEAIELFE 509



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 179/373 (47%), Gaps = 5/373 (1%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+   N  +    K   L+ AR+LFD++PQRD  SWT +ISGYV  +   EAL L+  M+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                  + F LS  L           G  +HG+ ++TG  +   V SAL DMY K G I
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEI 167

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             + ++FD+M  R+ V+WTA+I    + G  E G A FS + +S +  +++ +A  L A 
Sbjct: 168 GRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKAS 227

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           AD  A   G+ +H    + G+D  SF A++L  MY+KCG ++     F  M   D+VSWT
Sbjct: 228 ADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWT 287

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +++  Y Q G  D  L+ F+ +  S   P+   F  V++ C +   +  G Q  H+    
Sbjct: 288 TIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ-LHAHVLC 346

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
            G          I+ L ++ G       V   M  + D   W++++     +  +   + 
Sbjct: 347 VGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFR-DIITWSTIIAA---YSQVGYGEE 402

Query: 451 AAEALFEIEPENP 463
           A E L  +  E P
Sbjct: 403 AFEYLSRMRSEGP 415



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 155/312 (49%), Gaps = 34/312 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +S++I  C     L+ G+++H+H+   GF   + ++N ++ +Y+KCG ++    +
Sbjct: 316 PNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKV 375

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M+ RD+ +++T+I+ +++ G  E+A      M                         
Sbjct: 376 FCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS----------------------- 412

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                    E    N+F L+SVLS   ++  L  GK++H +++  G +   +V SAL  M
Sbjct: 413 ---------EGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIM 463

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGSI EA +IF      D++SWTAMI  Y + G  +E   LF  + K G+RP++ TF
Sbjct: 464 YAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTF 523

Query: 264 AGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            GVL AC+     +LG      M++     P       ++ +  + G + +++ +   MP
Sbjct: 524 IGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMP 583

Query: 323 -RPDLVSWTSLI 333
            + D V W++L+
Sbjct: 584 IQWDDVVWSTLL 595



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 12  KEALQILHQISH--PSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA + L ++    P P+ ++  S++  C     LE+GK++H+H+ S G +    + + L
Sbjct: 401 EEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSAL 460

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + MYAKCG+I++A  +F +  + D+ S+  MISG+ + G  ++A  LF+ + +
Sbjct: 461 IIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQK 513


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/446 (37%), Positives = 253/446 (56%), Gaps = 33/446 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C     L  G+ +H +   + F   + ++NCLLDMY+K GN              
Sbjct: 256 SVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGN-------------- 301

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                            L  A  +F+ M +R   SWT+MI+GY R      ++ L+  M+
Sbjct: 302 -----------------LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME 344

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    + FT++++L A +    L  GK++H YI      SD  V +AL DMY KCGS+
Sbjct: 345 K-EGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSM 403

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A  +F +M  +D+VSW  MIG Y +     E   LF E+ +   +PN+ T A +L AC
Sbjct: 404 GDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPAC 462

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  AA E G+++HG++ R G+      A+ALV MY KCG +  ++ +F+ +P  DLVSWT
Sbjct: 463 ASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWT 522

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +IAGY  +G   +A+  F  +  SG +PD + F+ +L AC+H+GL+D+G  +F+ ++  
Sbjct: 523 VMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNN 582

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             +   ++HYACIVDLLAR+G   +A   I  MP++PD  +W +LL GCRI+ ++ LA++
Sbjct: 583 CCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEK 642

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 643 VAEHVFELEPENTGYYVLLANIYAEA 668



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/459 (30%), Positives = 247/459 (53%), Gaps = 24/459 (5%)

Query: 5   LCNQRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    L+ A+++++Q   P   +  Y S++Q C   +++++G+++HS ++S+  +    
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV 137

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS--------------- 107
           + + L+ MY  CG++ + + +FD++    V  +N +++G+ K G+               
Sbjct: 138 LGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG 197

Query: 108 ---LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
              +E AR LFDE+  RD  SW +MISGYV      + LDL+  M     + ++  T+ S
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN-TDLATMVS 256

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           V++  S    L LG+ +HGY ++  F  +  + + L DMY K G++N A Q+F+ M +R 
Sbjct: 257 VVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERS 316

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           VVSWT+MI  Y +EG  +    LF E+ K GI P+ FT   +L+ACA     E GK VH 
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHN 376

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           Y+         F ++AL+ MY+KCG++ ++  VF+ M   D+VSW ++I GY++N +P++
Sbjct: 377 YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE 436

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           AL  F + ++  ++P+ I    +L AC     +++G Q  H    ++G +        +V
Sbjct: 437 ALNLF-VEMQYNSKPNSITMACILPACASLAALERG-QEIHGHILRNGFSLDRHVANALV 494

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           D+  + G    A  +   +P K D   W  ++ G  +HG
Sbjct: 495 DMYLKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMHG 532



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 190/455 (41%), Gaps = 93/455 (20%)

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           ++Y  C  I  +  L  E  +  +  YN  I  F + G+L +A  L ++ P+ D      
Sbjct: 46  NLYHSCATIGTS-VLPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKPD------ 98

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                         L+L               T  SVL   + ++ ++ G+ IH  I   
Sbjct: 99  --------------LELR--------------TYCSVLQLCADLKSIQDGRRIHSIIQSN 130

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMV--------------------------- 221
             + D V+ S L  MY  CG + E R+IFDK+                            
Sbjct: 131 DVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLF 190

Query: 222 ----------------------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
                                 DRDV+SW +MI  Y   G  E+G  LF +++  GI  +
Sbjct: 191 KRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTD 250

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T   V+  C++     LG+ +HGY  +  +       + L+ MYSK GN+ ++ +VF 
Sbjct: 251 LATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFE 310

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M    +VSWTS+IAGYA+ G+ D ++  F  + K G  PD      +L AC   GL++ 
Sbjct: 311 TMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLEN 370

Query: 380 GLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           G    + IKE       +D +    ++D+ A+ G   +A  V S+M +K D   W +++G
Sbjct: 371 GKDVHNYIKEN---KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIG 426

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
           G   +    L   A     E++  +    +TMA I
Sbjct: 427 G---YSKNSLPNEALNLFVEMQYNSKPNSITMACI 458



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 7/146 (4%)

Query: 13  EALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           EAL +  ++   S P+    + ++  C    ALE G+++H H+  +GF     ++N L+D
Sbjct: 436 EALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 495

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFS 125
           MY KCG +  A+ LFD + E+D+ S+  MI+G+   G   +A   F+EM     + D  S
Sbjct: 496 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS 555

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQN 151
           + +++          E    + MM+N
Sbjct: 556 FISILYACSHSGLLDEGWGFFNMMRN 581


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 269/473 (56%), Gaps = 34/473 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D L N  R+   +QI   +  P+   Y S+++ C +   LE G+++HS +  + F+   
Sbjct: 468 LDDLRNSFRIFRQMQIEEIV--PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           ++ + L+DMYAK G                                L+ A ++      +
Sbjct: 526 YVCSVLIDMYAKLGK-------------------------------LDTAWDILIRFAGK 554

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  SWT MI+GY +YN   +AL  +R M +     S++  L++ +SA + +Q L+ G++I
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQMLD-RGIRSDEVGLTNAVSACAGLQALKEGQQI 613

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H     +GF SD    +AL  +Y +CG I E+   F++    D ++W A++  + Q G  
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   +F  + + GI  N FTF   + A ++ A  + GKQVH  +T+ GYD  +   +AL
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + MY+KCG++ +++K F  +   + VSW ++I  Y+++G   +AL+ F+ ++ S  +P+H
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 793

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           +  VGVL+AC+H GLVDKG+ YF S+  ++GL+   +HY C+VD+L R+G    A++ I 
Sbjct: 794 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +MP+KPD  +W +LL  C +H N+++ + AA  L E+EPE+ ATYV ++N+YA
Sbjct: 854 EMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 906



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 195/428 (45%), Gaps = 34/428 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P  +SS++  C++  +LE G+++H  +   GF    ++ N L+ +Y   GN+  A+  
Sbjct: 286 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE-- 343

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                        ++F  M QRD  ++  +I+G  +     +A+
Sbjct: 344 -----------------------------HIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 374

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M + +    +  TL+S++ A SA   L  G+++H Y  + GF S+  +  AL ++
Sbjct: 375 ELFKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  I  A   F +    +VV W  M+  Y         F +F ++    I PN +T+
Sbjct: 434 YAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 493

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C      ELG+Q+H  + +  +   ++  S L+ MY+K G ++ +  +      
Sbjct: 494 PSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 553

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWT++IAGY Q    DKAL  F  +L  G + D +     ++AC     + +G Q 
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQ 612

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+     G +        +V L +R G+  E+     +     D   W +L+ G +  G
Sbjct: 613 IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE-AGDNIAWNALVSGFQQSG 671

Query: 444 NLDLAKRA 451
           N + A R 
Sbjct: 672 NNEEALRV 679



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 194/415 (46%), Gaps = 36/415 (8%)

Query: 24  PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+      L++ C + N +L+EG+K+HS +   G      +S  L D Y           
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY----------- 130

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF                     G L  A  +FDEMP+R  F+W  MI      N   E 
Sbjct: 131 LFK--------------------GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV 170

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC-LRLGKEIHGYIMRTGFDSDEVVWSALS 201
             L+  M + EN   N+ T S VL A         + ++IH  I+  G     VV + L 
Sbjct: 171 FGLFVRMVS-ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLI 229

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y + G ++ AR++FD +  +D  SW AMI    +     E   LF ++   GI P  +
Sbjct: 230 DLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPY 289

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
            F+ VL+AC    + E+G+Q+HG + ++G+   ++  +ALV +Y   GN+ +++ +F+ M
Sbjct: 290 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
            + D V++ +LI G +Q G  +KA+E F+ +   G +PD      ++ AC+  G + +G 
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG- 408

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           Q  H+   K G          +++L A+      A D   +  ++ +  LW  +L
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVML 462


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 281/523 (53%), Gaps = 72/523 (13%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA---------- 72
           HP+  + +S+I+ C Q   +E+G ++H  +  SGF   V++   L+D Y+          
Sbjct: 148 HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARL 207

Query: 73  ---------------------KCGNISDAQTLFDEMQER--------------------- 90
                                KCG  + +  LF +M+E                      
Sbjct: 208 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 267

Query: 91  ------------------DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG 132
                             DV   N +I  +TK   ++  R LFD+M  ++  SWT MISG
Sbjct: 268 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 327

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
           Y++ +   EA+ L+  M N      + F  +SVL++  + + L  G+++H Y ++   +S
Sbjct: 328 YMQNSFDWEAMKLFGEM-NRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLES 386

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           DE V + L DMY K   + +A+++FD M +++V+S+ AMI  Y  + +  E   LF E+ 
Sbjct: 387 DEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 446

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
               +PN FTFA ++ A ++ A+   G+Q H  + ++G D   F  +ALV MY+KCG++E
Sbjct: 447 VRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIE 506

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            ++K+FN     D+V W S+I+ +AQ+G  ++AL  F  ++K G QP+++ FV VL+AC+
Sbjct: 507 EARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 566

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           HAG V+ GL +F+S+    G+    +HYAC+V LL RSG+  EA++ I KMP++P   +W
Sbjct: 567 HAGRVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVW 625

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            SLL  CRI GN++L K AAE     +P++  +Y+ ++NI+AS
Sbjct: 626 RSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFAS 668



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 205/400 (51%), Gaps = 32/400 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +++L+Q       +   K +H  +  SG +   F++N L++              
Sbjct: 47  PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILIN-------------- 92

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                   VCS         K   ++ AR +FD+MP ++  +W++M+S Y +     EAL
Sbjct: 93  --------VCS---------KSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEAL 135

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  +Q       N+F L+SV+ A + +  +  G ++HG+++R+GFD D  V ++L D 
Sbjct: 136 MVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDF 195

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G+I EAR +FD++ ++  V+WT +I  Y + GR      LF+++ ++ + P+ +  
Sbjct: 196 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 255

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + VL+AC+     E GKQ+H Y+ R G +      + L+  Y+KC  V+  +K+F+ M  
Sbjct: 256 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 315

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            +++SWT++I+GY QN    +A++ F  + + G +PD      VLT+C     +++G Q 
Sbjct: 316 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQ- 374

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            H+   K  L         ++D+ A+S    +A+ V   M
Sbjct: 375 VHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVM 414



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 3/261 (1%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K IHG I+ +G  SD  + + L ++  K   ++ AR +FDKM  +++++W++M+  Y Q+
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 239 GRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           G  EE   +F +L  KSG  PN F  A V+ AC      E G Q+HG++ R G+D   + 
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++L+  YSK GN+E ++ VF+ +     V+WT++IAGY + G    +LE F  + ++  
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD  V   VL+AC+    ++ G Q  H+   + G          ++D   +  R     
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQ-IHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 307

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            +  +M +K +   W +++ G
Sbjct: 308 KLFDQMVVK-NIISWTTMISG 327


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 264/509 (51%), Gaps = 70/509 (13%)

Query: 7   NQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
             R+L EA ++  ++      P+   + SL+  C    AL  G+++HSH+   G +  V 
Sbjct: 257 QHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVV 316

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           ++N L+ M                               + K   ++ AR  FD M +RD
Sbjct: 317 VANALITM-------------------------------YCKCNCIQDARETFDRMSKRD 345

Query: 123 NFSWTAMISGYVRYN-QPIEALD-LYRMMQNF--ENSVSNKFTLSSVLSAVSAIQCLRLG 178
             SW+AMI+GY +   Q  E+LD ++++++    E    NK T  S+L A S    L  G
Sbjct: 346 VISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG 405

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---------------- 222
           ++IH  I + GF+SD  + +A+ +MY KCGSI EA Q+F KM +                
Sbjct: 406 RQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKC 465

Query: 223 ---------------RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
                          R+VVSW  MI  Y Q G   + F L S +   G +P+  T   +L
Sbjct: 466 GDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISIL 525

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC   +A E GK VH    ++G +  +  A++L+ MYSKCG V  ++ VF+ +   D V
Sbjct: 526 EACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTV 585

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           +W +++AGY Q+G+  +A++ F+ +LK    P+ I F  V++AC  AGLV +G + F  +
Sbjct: 586 AWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIM 645

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           +E   +     HY C+VDLL R+GR  EAE+ I +MP +PD  +W +LLG C+ H N+ L
Sbjct: 646 QEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQL 705

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
           A+ AA  +  +EP N + YVT++NIYA A
Sbjct: 706 AEWAAHHILRLEPSNASVYVTLSNIYAQA 734



 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 251/482 (52%), Gaps = 48/482 (9%)

Query: 5   LCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           LC   RLKEA+Q+L  I       + + Y  +I+ C + R  E+GK VH  L   G    
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +++ N L++ Y+K G+++                            S+EQ   +F  M  
Sbjct: 113 IYLGNSLINFYSKFGDVA----------------------------SVEQ---VFRRMTL 141

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RD  +W++MI+ Y   N P +A D +  M++  N   N+ T  S+L A +    L   +E
Sbjct: 142 RDVVTWSSMIAAYAGNNHPAKAFDTFERMKD-ANIEPNRITFLSILKACNNYSMLEKARE 200

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH  +  +G ++D  V +AL  MY KCG I+ A +IF KM +R+VVSWTA+I    Q  +
Sbjct: 201 IHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRK 260

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E F L+ +++++GI PNA TF  +LN+C    A   G+++H +++  G +     A+A
Sbjct: 261 LNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANA 320

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK-----ALEYFELLLKS 355
           L+ MY KC  ++++++ F+ M + D++SW+++IAGYAQ+G  DK       +  E + + 
Sbjct: 321 LITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRRE 380

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P+ + F+ +L AC+  G +++G Q  H+   K G          I ++ A+ G  +E
Sbjct: 381 GVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDRSLQTAIFNMYAKCGSIYE 439

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIYA 474
           AE V SKM  K +   WASLL      G+L     +AE +F E+   N  ++  M   YA
Sbjct: 440 AEQVFSKMENK-NVVAWASLLTMYIKCGDLT----SAEKVFSEMSTRNVVSWNLMIAGYA 494

Query: 475 SA 476
            +
Sbjct: 495 QS 496



 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 235/486 (48%), Gaps = 77/486 (15%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + S+++ C     LE+ +++H+ +K+SG +  V ++  L+ MY+KCG IS A  +
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +M+ER+V S+  +I    +   L +A  L+++M Q       A IS            
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ-------AGIS------------ 277

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         N  T  S+L++ +  + L  G+ IH +I   G ++D VV +AL  M
Sbjct: 278 -------------PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITM 324

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR-----EEGFALFSELIKSGIRP 258
           Y KC  I +AR+ FD+M  RDV+SW+AMI  Y Q G +     +E F L   + + G+ P
Sbjct: 325 YCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFP 384

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N  TF  +L AC+ H A E G+Q+H  ++++G++      +A+ +MY+KCG++  +++VF
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444

Query: 319 NGMPRPDLVSWTSL-------------------------------IAGYAQNGMPDKALE 347
           + M   ++V+W SL                               IAGYAQ+G   K  E
Sbjct: 445 SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFE 504

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
               +   G QPD +  + +L AC     +++G +  H+   K GL         ++ + 
Sbjct: 505 LLSSMKVEGFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMY 563

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG----NLDLAKRAAEALFEIEPENP 463
           ++ G   EA  V  K+  + D   W ++L G   HG     +DL KR    L E  P N 
Sbjct: 564 SKCGEVTEARTVFDKISNR-DTVAWNAMLAGYGQHGIGPEAVDLFKR---MLKERVPPNE 619

Query: 464 ATYVTM 469
            T+  +
Sbjct: 620 ITFTAV 625



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 122/242 (50%), Gaps = 5/242 (2%)

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           + R  + GR +E   L   + + G+  N+ T+  ++  CA     E GK VH  +  +G 
Sbjct: 50  VWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGL 109

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
               +  ++L++ YSK G+V + ++VF  M   D+V+W+S+IA YA N  P KA + FE 
Sbjct: 110 AIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 169

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +  +  +P+ I F+ +L AC +  +++K  +  H++ +  G+         ++ + ++ G
Sbjct: 170 MKDANIEPNRITFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVATALITMYSKCG 228

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTM 469
               A ++  KM  + +   W +++     H  L+ A    E + +  I P N  T+V++
Sbjct: 229 EISLACEIFQKMKER-NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISP-NAVTFVSL 286

Query: 470 AN 471
            N
Sbjct: 287 LN 288


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 267/469 (56%), Gaps = 36/469 (7%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++A Q+ +++      P+   + S++  C    AL  GK VH+   ++G    V ++  L
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATAL 304

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY  CG                               S+E AR +FD+M  RD  SWT
Sbjct: 305 IRMYMGCG-------------------------------SIEGARRVFDKMKVRDVVSWT 333

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            MI GY   +   +A  L+  MQ  E    ++ T   +++A ++   L L +EIH  ++R
Sbjct: 334 VMIRGYAENSNIEDAFGLFATMQE-EGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF +D +V +AL  MY KCG+I +ARQ+FD M  RDVVSW+AMIG Y + G  EE F  
Sbjct: 393 AGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFET 452

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  + ++ + P+  T+  +LNAC    A +LG +++    +     +    +AL++M  K
Sbjct: 453 FHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVK 512

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G++E ++ +F  M + D+V+W  +I GY+ +G   +AL+ F+ +LK   +P+ + FVGV
Sbjct: 513 HGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGV 572

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC+ AG V++G ++F  + +  G+  T + Y C+VDLL R+G   EAE +I++MP+KP
Sbjct: 573 LSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKP 632

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +  +W++LL  CRI+GNLD+A+RAAE     EP + A YV ++++YA+A
Sbjct: 633 NSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAA 681



 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 237/466 (50%), Gaps = 47/466 (10%)

Query: 11  LKEALQILHQISHPS--PSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +KEA  +  Q+   +  PSI + LI    C     L+ GK+ H+ +   GF     I   
Sbjct: 143 VKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTA 202

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MY K G++  A+ +FD + +RDV ++N MI G+ K G  E+A  LF           
Sbjct: 203 LVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLF----------- 251

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                              YRM Q  E    N+ +  S+L   S  + L  GK +H   M
Sbjct: 252 -------------------YRMQQ--EGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM 290

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            TG   D  V +AL  MY  CGSI  AR++FDKM  RDVVSWT MI  Y +    E+ F 
Sbjct: 291 NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFG 350

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF+ + + GI+P+  T+  ++NACA  A   L +++H  + R G+       +ALVHMY+
Sbjct: 351 LFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYA 410

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG ++++++VF+ M R D+VSW+++I  Y +NG  ++A E F L+ ++  +PD + ++ 
Sbjct: 411 KCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYIN 470

Query: 367 VLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           +L AC H G +D G++ Y  +IK    L         ++++  + G    A  +   M +
Sbjct: 471 LLNACGHLGALDLGMEIYTQAIKAD--LVSHIPVGNALINMNVKHGSIERARYIFENM-V 527

Query: 426 KPDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYV 467
           + D   W  ++GG  +HGN    LDL  R  +  F     N  T+V
Sbjct: 528 QRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFR---PNSVTFV 570



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 219/467 (46%), Gaps = 53/467 (11%)

Query: 17  ILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           +LH++    +H     Y  L Q C   R    GK+V  H+  SG +  ++  N L+ +++
Sbjct: 48  VLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHS 107

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG 132
            CGN                               + +AR  FD +  +   +W A+I+G
Sbjct: 108 ICGN-------------------------------MLEARQTFDSVENKTVVTWNAIIAG 136

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
           Y +     EA  L+R M + E    +  T   VL A S+   L+LGKE H  +++ GF S
Sbjct: 137 YAQLGHVKEAFALFRQMVD-EAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVS 195

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D  + +AL  MY K GS++ ARQ+FD +  RDV ++  MIG Y + G  E+ F LF  + 
Sbjct: 196 DFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQ 255

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           + G +PN  +F  +L+ C+   A   GK VH      G       A+AL+ MY  CG++E
Sbjct: 256 QEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIE 315

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            +++VF+ M   D+VSWT +I GYA+N   + A   F  + + G QPD I ++ ++ AC 
Sbjct: 316 GARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINAC- 374

Query: 373 HAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
            A   D  L +  HS   + G          +V + A+ G   +A  V   M  + D   
Sbjct: 375 -ASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMS-RRDVVS 432

Query: 432 WASLLG-----GC--RIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
           W++++G     GC         L KR       +EP+   TY+ + N
Sbjct: 433 WSAMIGAYVENGCGEEAFETFHLMKRN-----NVEPD-VVTYINLLN 473


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 244/451 (54%), Gaps = 41/451 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  +I+ C +   + EG++VH      GFK   F++  L+DMY+K G + DA  +
Sbjct: 108 PNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKV 167

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F EM ER+V  +  +I+G+   G +   R LFD  P+RD   W+ +ISGY+       A 
Sbjct: 168 FGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAAR 227

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M N                                         D + W+A+ + 
Sbjct: 228 ELFDKMPN----------------------------------------RDTMSWNAMLNG 247

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           Y   G +    ++FD+M +R+V SW  +IG Y + G   E    F  ++  G + PN FT
Sbjct: 248 YAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFT 307

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL+AC+   A ++GK VH Y   IGY    F  + L+ MY+KCG +EN+  VFN + 
Sbjct: 308 LVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLD 367

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D++SW ++I G A +G    AL  F+ +   G +PD + FVG+L+ACTH GLV  G  
Sbjct: 368 RKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFL 427

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+ + + +    +HY C+VDLL R+G   +A + I KMP++PD  +WA+LLG CR++
Sbjct: 428 YFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLY 487

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            N+++A+ A + L E+EP NPA +V ++NIY
Sbjct: 488 KNVEIAELALQRLIELEPNNPANFVMVSNIY 518



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 192/420 (45%), Gaps = 47/420 (11%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +    I   R  +  E   ++ + + + G +   F++   +   ++   I  A+ LFD++
Sbjct: 11  VEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKI 70

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            + +  ++N M  G+ + G       LF E+ +         I+G               
Sbjct: 71  PQPNTATWNAMFRGYLQNGHHRDTVVLFGELNR---------IAG--------------- 106

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
                   + N FT   ++ +   ++ +R G+E+H    + GF S+  V ++L DMY K 
Sbjct: 107 --------MPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKK 158

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G + +A ++F +M +R+VV WTA+I  Y   G    G  LF    +  +   +   +G +
Sbjct: 159 GCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYI 218

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            +    AA EL  ++    T         + +A+++ Y+  G VE  +KVF+ MP  ++ 
Sbjct: 219 ESKNMAAARELFDKMPNRDT--------MSWNAMLNGYAVNGEVEMFEKVFDEMPERNVF 270

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           SW  LI GY +NG+  + LE F+ +L  G   P+    V VL+AC+  G +D G ++ H 
Sbjct: 271 SWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMG-KWVHV 329

Query: 387 IKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             E  G  Y  + +    ++D+ A+ G    A  V + +  K D   W +++ G  IHG+
Sbjct: 330 YAESIG--YKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRK-DIISWNTIINGLAIHGH 386


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 266/471 (56%), Gaps = 29/471 (6%)

Query: 32   LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
            ++Q C +  AL   K++H ++   G    V + N L+ MY+K G +  A+ +FD M+ R+
Sbjct: 781  VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 840

Query: 92   VCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYR 147
              S+N+MIS +   G L  A +LF E+     + D  +W  ++SG+  +    E L++ +
Sbjct: 841  TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQ 900

Query: 148  MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
             MQ  E    N  +++SVL A+S +  L +GKE HGY++R GFD D  V ++L DMY K 
Sbjct: 901  RMQG-EGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKN 959

Query: 208  GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG-- 265
             S+  A+ +FD M +R++ +W +++  Y  +G  E+   L +++ K GI+P+  T+ G  
Sbjct: 960  HSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI 1019

Query: 266  ----------------------VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
                                  +L ACA  +  + GK++H    R G+    F A+AL+ 
Sbjct: 1020 SGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALID 1079

Query: 304  MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            MYSK  +++N+ KVF  +    L SW  +I G+A  G+  +A+  F  + K G  PD I 
Sbjct: 1080 MYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAIT 1139

Query: 364  FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            F  +L+AC ++GL+ +G +YF S+   + +    +HY C+VDLL R+G   EA D+I  M
Sbjct: 1140 FTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM 1199

Query: 424  PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            P+KPD  +W +LLG CRIH NL  A+ AA+ LF++EP N A Y+ M N+Y+
Sbjct: 1200 PLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYS 1250



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 204/491 (41%), Gaps = 96/491 (19%)

Query: 28   IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
            +YS  ++ C +   +  G ++H  L   GF   V++   L++ Y +C             
Sbjct: 676  VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW------------ 723

Query: 88   QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                                LE+A  +F EMP  +   W   I   ++  +  + ++L+R
Sbjct: 724  -------------------GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFR 764

Query: 148  MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
             MQ F    +   T+  VL A   +  L   K+IHGY+ R G DSD  + + L  MY K 
Sbjct: 765  KMQ-FSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKN 823

Query: 208  GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS------------- 254
            G +  AR++FD M +R+  SW +MI  Y   G   + ++LF EL  S             
Sbjct: 824  GKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLL 883

Query: 255  ----------------------GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
                                  G +PN+ +   VL A ++     +GK+ HGY+ R G+D
Sbjct: 884  SGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFD 943

Query: 293  PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
               +  ++L+ MY K  ++ +++ VF+ M   ++ +W SL++GY+  GM + AL     +
Sbjct: 944  CDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 1003

Query: 353  LKSGTQPDHIVFVG------------------------VLTACTHAGLVDKGLQYFHSIK 388
             K G +PD + + G                        +L AC    L+ KG +  H + 
Sbjct: 1004 EKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKG-KEIHCLS 1062

Query: 389  EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             ++G          ++D+ ++S     A  V  ++  K     W  ++ G  I G   L 
Sbjct: 1063 IRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLAS-WNCMIMGFAIFG---LG 1118

Query: 449  KRAAEALFEIE 459
            K A     E++
Sbjct: 1119 KEAISVFNEMQ 1129



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 170/333 (51%), Gaps = 22/333 (6%)

Query: 12   KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
            +E L IL ++      P+ S  +S++Q   +   L  GK+ H ++  +GF   V++   L
Sbjct: 893  EEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSL 952

Query: 68   LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DN 123
            +DMY K  ++  AQ +FD M+ R++ ++N+++SG++  G  E A  L ++M +     D 
Sbjct: 953  IDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL 1012

Query: 124  FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
             +W  MISGY  +    +A             + N  +++ +L A +++  L+ GKEIH 
Sbjct: 1013 VTWNGMISGYAMWGCARKAF------------MPNSASITCLLRACASLSLLQKGKEIHC 1060

Query: 184  YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
              +R GF  D  V +AL DMY K  S+  A ++F ++ ++ + SW  MI  +   G  +E
Sbjct: 1061 LSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKE 1120

Query: 244  GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG-KQVHGYMTRIGYDPYSFAASALV 302
              ++F+E+ K G+ P+A TF  +L+AC +      G K     +T     P       +V
Sbjct: 1121 AISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMV 1180

Query: 303  HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
             +  + G ++ +  + + MP +PD   W +L+ 
Sbjct: 1181 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLG 1213



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 178/426 (41%), Gaps = 74/426 (17%)

Query: 91  DVCSYNT---------MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI------SGYVR 135
           DV  +NT         MI    K      A+NL        +F   AM+        Y++
Sbjct: 581 DVFRFNTTCGMLGALVMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLK 640

Query: 136 YNQPIE-----ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR-----LGKEIHGYI 185
           +N  +E     A  L+ +++ F+          S + +V+   C R     LG EIHG +
Sbjct: 641 WNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCL 700

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ GFD D  +  AL + YG+C  + +A Q+F +M + + + W   I    Q  + ++G 
Sbjct: 701 IKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGV 760

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF ++  S ++    T   VL AC    A    KQ+HGY+ R G D      + L+ MY
Sbjct: 761 ELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY 820

Query: 306 SKCGNVENSKKVFNGMP-----------------------------------RPDLVSWT 330
           SK G +E +++VF+ M                                    +PD+V+W 
Sbjct: 821 SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 880

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            L++G+  +G  ++ L   + +   G +P+      VL A +  G ++ G       KE 
Sbjct: 881 CLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMG-------KET 933

Query: 391 HGLT----YTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           HG      +  D Y    ++D+  ++     A+ V   M  + + F W SL+ G    G 
Sbjct: 934 HGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNR-NIFAWNSLVSGYSFKGM 992

Query: 445 LDLAKR 450
            + A R
Sbjct: 993 FEDALR 998


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 269/498 (54%), Gaps = 41/498 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP--GVFISNCLL 68
           L  A++    +   +   +S++I       AL  G ++ + +      P   +     L+
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIA------ALSHGGRIDAAIAVYERDPVKSIACRTALI 329

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
              A+CG I DA+ LF+++ E  V S+N +I+G+ + G + +A+ LFD+MP R+  SW  
Sbjct: 330 TGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAG 389

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI+GY +  +  EAL L + +      + +  +L+S+  A S I  L  G ++H   ++ 
Sbjct: 390 MIAGYAQNGRSEEALGLLQELHR-SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW-------------------- 228
           G   +    +AL  MYGKC ++  ARQ+F +MV +D+VSW                    
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508

Query: 229 -----------TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
                      T +I  Y    +  E    F  +      PN+     +L  C    A +
Sbjct: 509 DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           +G+Q+H    ++G D     A+AL+ MY KCG   +S+++F+ M   D+ +W ++I GYA
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYA 627

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           Q+G+  +A++ ++ +  +G  P+ + FVG+L AC+HAGLVD+G ++F S+ + +GLT   
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           +HYAC+VDLL R+G    AE  I  MP++PD  +W++LLG C+IH N ++ KRAAE LF 
Sbjct: 688 EHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFR 747

Query: 458 IEPENPATYVTMANIYAS 475
           IEP N   YV ++NIY+S
Sbjct: 748 IEPSNAGNYVMLSNIYSS 765



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 177/332 (53%), Gaps = 8/332 (2%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R +EAL +L ++      PS S  +S+   C    ALE G +VHS     G +   F  N
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ MY KC N+  A+ +F  M  +D+ S+N+ ++   +   L++ARN FD M  RD+ S
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVS 518

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WT +IS Y    Q  EA+  ++ M   E+ + N   L+ +L    ++   ++G++IH   
Sbjct: 519 WTTIISAYAHAEQSNEAMGAFKTM-FCEHELPNSPILTILLGVCGSLGASKIGQQIHTVA 577

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ G DS+ +V +AL  MY KCG   ++R+IFD M +RD+ +W  +I  Y Q G   E  
Sbjct: 578 IKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAI 636

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHM 304
            ++  +  +G+ PN  TF G+LNAC+     + G +    M++  G  P     + +V +
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
             + G+V+ +++    MP  PD V W++L+  
Sbjct: 697 LGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 208/415 (50%), Gaps = 19/415 (4%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++  Y + G+I+ A+ LFD M  RDV S+N+M++G+     +  ARNLF++MP+R+  
Sbjct: 131 NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLV 190

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWT MISGY R     +A D++  M   E  + ++   +S LSAV  +  L + + +   
Sbjct: 191 SWTVMISGYGRIENHGKAWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDVLESLRVL 249

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSI-NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            ++TGF+ D V+ +A+ ++Y +  S+ + A + F+ M++R+  +W+ MI      GR + 
Sbjct: 250 ALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDA 309

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             A++       I        G+        A  L +Q+         +P   + +AL+ 
Sbjct: 310 AIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIP--------EPIVVSWNALIT 361

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            Y + G V  +K++F+ MP  + +SW  +IAGYAQNG  ++AL   + L +SG  P    
Sbjct: 362 GYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSS 421

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVIS 421
              +  AC++   ++ G Q  HS+  K G  + +  +AC  ++ +  +      A  V S
Sbjct: 422 LTSIFFACSNIVALETGTQ-VHSLAVKVGCQFNS--FACNALITMYGKCRNMEYARQVFS 478

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +M  K D   W S L     +  LD A+   + +      +  ++ T+ + YA A
Sbjct: 479 RMVTK-DIVSWNSFLAALVQNDLLDEARNTFDNMLS---RDDVSWTTIISAYAHA 529



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 185/393 (47%), Gaps = 42/393 (10%)

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
            + G + +A+ +FD M  RD+ ++N+MIS +   G  + AR+L+D +   +  +   ++S
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           GY R  + +EA  ++  M    N+V+    +S  +         RL            FD
Sbjct: 105 GYGRLGRVLEARRVFDGMLE-RNTVAWNAMISCYVQNGDITMARRL------------FD 151

Query: 192 S----DEVVWSALSDMYGKCGSIN--EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +    D   W+++  + G C S+   +AR +F+KM +R++VSWT MI  Y +     + +
Sbjct: 152 AMPSRDVSSWNSM--LTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAW 209

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F ++ + G+ P+   FA  L+A       ++ + +     + G++      +A++++Y
Sbjct: 210 DIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVY 269

Query: 306 SKCGNV-ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           S+  +V + + K F  M   +  +W+++IA  +  G  D A+  +E        P   + 
Sbjct: 270 SRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE------RDPVKSIA 323

Query: 365 --VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               ++T     G +D     F  I E   +++ A     ++    ++G  +EA+++  K
Sbjct: 324 CRTALITGLAQCGRIDDARILFEQIPEPIVVSWNA-----LITGYMQNGMVNEAKELFDK 378

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           MP + +   WA ++ G   +G      R+ EAL
Sbjct: 379 MPFR-NTISWAGMIAGYAQNG------RSEEAL 404



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 120/288 (41%), Gaps = 46/288 (15%)

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
           G+ G + EAR++FD M  RD+++W +MI  Y   G  +    L+  +    +R  A   +
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 265 GVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           G            LG+ +       G  +  + A +A++  Y + G++  ++++F+ MP 
Sbjct: 105 GY---------GRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPS 155

Query: 324 PDLVSWTSLIAGYAQN-----------GMPD--------------------KALEYFELL 352
            D+ SW S++ GY  +            MP+                    KA + F  +
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
            + G  PD   F   L+A    G +D  L+    +  K G          I+++ +R   
Sbjct: 216 HREGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
             +      +  ++ +++ W++++      G +D    AA A++E +P
Sbjct: 275 VLDTAIKFFESMIERNEYTWSTMIAALSHGGRID----AAIAVYERDP 318



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 17/178 (9%)

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           SA +    + G V  +++VF+ MPR D+++W S+I+ Y  NGMPD A + ++ +     +
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
              I+  G        G V +  + F  + E++ + + A     ++    ++G    A  
Sbjct: 98  TGAILLSGY----GRLGRVLEARRVFDGMLERNTVAWNA-----MISCYVQNGDITMARR 148

Query: 419 VISKMPMKPDKFLWASLLGG-CRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYA 474
           +   MP + D   W S+L G C     +D     A  LFE  PE N  ++  M + Y 
Sbjct: 149 LFDAMPSR-DVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPERNLVSWTVMISGYG 200


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 276/514 (53%), Gaps = 40/514 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I +  N      A Q+   I  P P+  S+LI     +    E  K++S L+  G KP +
Sbjct: 105 IRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDM 164

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDE 117
            +        A  G+    + + D+        DV   N +I  + K   +E AR +FD+
Sbjct: 165 PVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDD 224

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  RD  SWT++ S YV+   P + +D++R M  +     N  T+SS+L A + ++ L+ 
Sbjct: 225 LVVRDVVSWTSLSSCYVKCGFPRKGMDVFREM-GWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIHG+ +R G   +  V SAL  +Y KC S+ EAR +FD M  RDVVSW  ++  YF+
Sbjct: 284 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 343

Query: 238 EGRREEGFALFSELIKSGIR-----------------------------------PNAFT 262
               E+GF+LF ++ + G+R                                   PN  T
Sbjct: 344 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 403

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            + +L AC+      +GK++H Y+ R        + +AL++MY+KCG++  S+ VF+ M 
Sbjct: 404 ISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR 463

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D+V+W ++I   A +G   +AL  F+ +L S  QP+ + F GVL+ C+H+ LV++G+Q
Sbjct: 464 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQ 523

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            F+S+   H +   A+HY+C+VD+ +R+GR +EA   I  MPM+P    W +LL  CR++
Sbjct: 524 IFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVY 583

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++LAK +A+ LFEIEP NP  YV++ NI  +A
Sbjct: 584 KNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 617



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 44/75 (58%)

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ +    G+   ++++F+ +P+PD  + ++LI+    +G+ ++A++ +  L + G +PD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 361 HIVFVGVLTACTHAG 375
             VF+    AC  +G
Sbjct: 164 MPVFLAAAKACAVSG 178


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 269/498 (54%), Gaps = 41/498 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP--GVFISNCLL 68
           L  A++    +   +   +S++I       AL  G ++ + +      P   +     L+
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIA------ALSHGGRIDAAIAVYERDPVKSIACRTALI 329

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
              A+CG I DA+ LF+++ E  V S+N +I+G+ + G + +A+ LFD+MP R+  SW  
Sbjct: 330 TGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAG 389

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI+GY +  +  EAL L + +      + +  +L+S+  A S I  L  G ++H   ++ 
Sbjct: 390 MIAGYAQNGRSEEALGLLQELHR-SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW-------------------- 228
           G   +    +AL  MYGKC ++  ARQ+F +MV +D+VSW                    
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508

Query: 229 -----------TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
                      T +I  Y    +  E    F  +      PN+     +L  C    A +
Sbjct: 509 DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           +G+Q+H    ++G D     A+AL+ MY KCG   +S+++F+ M   D+ +W ++I GYA
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYA 627

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           Q+G+  +A++ ++ +  +G  P+ + FVG+L AC+HAGLVD+G ++F S+ + +GLT   
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           +HYAC+VDLL R+G    AE  I  MP++PD  +W++LLG C+IH N ++ KRAAE LF 
Sbjct: 688 EHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFR 747

Query: 458 IEPENPATYVTMANIYAS 475
           IEP N   YV ++NIY+S
Sbjct: 748 IEPSNAGNYVMLSNIYSS 765



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 177/332 (53%), Gaps = 8/332 (2%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R +EAL +L ++      PS S  +S+   C    ALE G +VHS     G +   F  N
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ MY KC N+  A+ +F  M  +D+ S+N+ ++   +   L++ARN FD M  RD+ S
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVS 518

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WT +IS Y    Q  EA+  ++ M   E+ + N   L+ +L    ++   ++G++IH   
Sbjct: 519 WTTIISAYAHAEQSNEAMGAFKTM-FCEHELPNSPILTILLGVCGSLGASKIGQQIHTVA 577

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ G DS+ +V +AL  MY KCG   ++R+IFD M +RD+ +W  +I  Y Q G   E  
Sbjct: 578 IKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAI 636

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHM 304
            ++  +  +G+ PN  TF G+LNAC+     + G +    M++  G  P     + +V +
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
             + G+V+ +++    MP  PD V W++L+  
Sbjct: 697 LGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 208/415 (50%), Gaps = 19/415 (4%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++  Y + G+I+ A+ LFD M  RDV S+N+M++G+     +  ARNLF++MP+R+  
Sbjct: 131 NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLV 190

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWT MISGY R     +A D++  M   E  + ++   +S LSAV  +  L + + +   
Sbjct: 191 SWTVMISGYGRIENHGKAWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDVLESLRVL 249

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSI-NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            ++TGF+ D V+ +A+ ++Y +  S+ + A + F+ M++R+  +W+ MI      GR + 
Sbjct: 250 ALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDA 309

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             A++       I        G+        A  L +Q+         +P   + +AL+ 
Sbjct: 310 AIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIP--------EPIVVSWNALIT 361

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            Y + G V  +K++F+ MP  + +SW  +IAGYAQNG  ++AL   + L +SG  P    
Sbjct: 362 GYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSS 421

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVIS 421
              +  AC++   ++ G Q  HS+  K G  + +  +AC  ++ +  +      A  V S
Sbjct: 422 LTSIFFACSNIVALETGTQ-VHSLAVKVGCQFNS--FACNALITMYGKCRNMEYARQVFS 478

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +M  K D   W S L     +  LD A+   + +      +  ++ T+ + YA A
Sbjct: 479 RMVTK-DIVSWNSFLAALVQNDLLDEARNTFDNMLS---RDDVSWTTIISAYAHA 529



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 185/393 (47%), Gaps = 42/393 (10%)

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
            + G + +A+ +FD M  RD+ ++N+MIS +   G  + AR+L+D +   +  +   ++S
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           GY R  + +EA  ++  M    N+V+    +S  +         RL            FD
Sbjct: 105 GYGRLGRVLEARRVFDGMLE-RNTVAWNAMISCYVQNGDITMARRL------------FD 151

Query: 192 S----DEVVWSALSDMYGKCGSIN--EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +    D   W+++  + G C S+   +AR +F+KM +R++VSWT MI  Y +     + +
Sbjct: 152 AMPSRDVSSWNSM--LTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAW 209

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F ++ + G+ P+   FA  L+A       ++ + +     + G++      +A++++Y
Sbjct: 210 DIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVY 269

Query: 306 SKCGNV-ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           S+  +V + + K F  M   +  +W+++IA  +  G  D A+  +E        P   + 
Sbjct: 270 SRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE------RDPVKSIA 323

Query: 365 --VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               ++T     G +D     F  I E   +++ A     ++    ++G  +EA+++  K
Sbjct: 324 CRTALITGLAQCGRIDDARILFEQIPEPIVVSWNA-----LITGYMQNGMVNEAKELFDK 378

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           MP + +   WA ++ G   +G      R+ EAL
Sbjct: 379 MPFR-NTISWAGMIAGYAQNG------RSEEAL 404



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 120/288 (41%), Gaps = 46/288 (15%)

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
           G+ G + EAR++FD M  RD+++W +MI  Y   G  +    L+  +    +R  A   +
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 265 GVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           G            LG+ +       G  +  + A +A++  Y + G++  ++++F+ MP 
Sbjct: 105 GY---------GRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPS 155

Query: 324 PDLVSWTSLIAGYAQN-----------GMPD--------------------KALEYFELL 352
            D+ SW S++ GY  +            MP+                    KA + F  +
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
            + G  PD   F   L+A    G +D  L+    +  K G          I+++ +R   
Sbjct: 216 HREGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
             +      +  ++ +++ W++++      G +D    AA A++E +P
Sbjct: 275 VLDTAIKFFESMIERNEYTWSTMIAALSHGGRID----AAIAVYERDP 318



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 17/178 (9%)

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           SA +    + G V  +++VF+ MPR D+++W S+I+ Y  NGMPD A + ++ +     +
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
              I+  G        G V +  + F  + E++ + + A     ++    ++G    A  
Sbjct: 98  TGAILLSGY----GRLGRVLEARRVFDGMLERNTVAWNA-----MISCYVQNGDITMARR 148

Query: 419 VISKMPMKPDKFLWASLLGG-CRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYA 474
           +   MP + D   W S+L G C     +D     A  LFE  PE N  ++  M + Y 
Sbjct: 149 LFDAMPSR-DVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPERNLVSWTVMISGYG 200


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 159/419 (37%), Positives = 256/419 (61%), Gaps = 9/419 (2%)

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
            K  V  ++ L  M  K G + +AQ LF ++ E D  SYNTM+S + +  ++E+A+  F+
Sbjct: 3   LKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFE 62

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +MP +D  SW  MI+G+ +  Q  +A DL+ +M        N  T ++++S    ++C  
Sbjct: 63  DMPIKDTPSWNTMITGFAQNQQMDKARDLFLIM-----PTKNVVTWNAMISGY--VECGD 115

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           L   +  +  +  F S  V W+A+   Y K G I  A ++F+KM ++++V+W AMI  Y 
Sbjct: 116 LDSALKLF-EKAPFKS-VVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYI 173

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           +  R E+G  LF  ++  GI+PN+ T +  L  C++ +A +LG+QVH  + +      + 
Sbjct: 174 ENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTT 233

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
           A ++L+ MY KCG +E+  K+F  +PR D+V+W ++I+GYAQ+G   KAL  F+ +++ G
Sbjct: 234 AGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG 293

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD I FV VL AC HAG  D G++YFHS+ + +GL    DHY C+VDLL R+G+  EA
Sbjct: 294 MKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEA 353

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            D+I KMP KP   ++ +LLG CRIH N ++A+ A++ L  ++P +   YV +AN+YA+
Sbjct: 354 VDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAA 412



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+ S  SS +  C +  AL+ G++VH  +  S           L+ MY KCG + D   
Sbjct: 194 QPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWK 253

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           LF ++  RDV ++N MISG+ + G  ++A  LFDEM ++
Sbjct: 254 LFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK 292


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 267/476 (56%), Gaps = 39/476 (8%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN---ISDAQTLFDEMQERDVCSY 95
           N ++    ++H  +  SG    + + N L+ +Y KC +     DA+ + DEM  +D  ++
Sbjct: 172 NISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTW 231

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            TM+ G+ + G +  AR++F+E+  + +  W AMISGYV     +EA +L+R M   E  
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMV-LERV 290

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR--TGFDSDEV--VWSALSDMYGKCGSIN 211
             ++FT +SVLSA + +     GK +HG I+R    F  +    V +AL   Y KCG+I 
Sbjct: 291 PLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIA 350

Query: 212 EARQIFDKMVDRDVVSWT-------------------------------AMIGRYFQEGR 240
            AR+IFD M  +DVVSW                                 M+  Y   G 
Sbjct: 351 VARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGF 410

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E+   LF+++    ++P  +T+AG + AC +  A + GKQ+HG++ ++G++  + A +A
Sbjct: 411 AEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNA 470

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY++CG V+ +  +F  MP  D VSW ++I+   Q+G   +ALE F+ ++  G  PD
Sbjct: 471 LITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPD 530

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I F+ VLTAC H+GLVD+G +YF S+K   G+    DHY  ++DLL R+GR  EA D+I
Sbjct: 531 RISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLI 590

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             MP +P   +W ++L GCR  G+++L   AA+ LF++ P++  TY+ ++N Y++A
Sbjct: 591 KTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAA 646



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 172/338 (50%), Gaps = 7/338 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHL--KSSGFKP--GVFISNCLLDMYAKCGNISDAQTLF 84
           ++S++  C        GK VH  +      F P   + ++N L+  Y+KCGNI+ A+ +F
Sbjct: 297 FTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIF 356

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           D M  +DV S+NT++SG+ +   L++A  +F+EMP ++  SW  M+SGYV      +AL 
Sbjct: 357 DNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALK 416

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L+  M++ EN     +T +  ++A   +  L+ GK++HG+I++ GF+      +AL  MY
Sbjct: 417 LFNKMRS-ENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMY 475

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            +CG++ EA  +F  M + D VSW AMI    Q G   E   LF  ++  GI P+  +F 
Sbjct: 476 ARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFL 535

Query: 265 GVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
            VL AC      + G +    M R  G  P     + L+ +  + G +  ++ +   MP 
Sbjct: 536 TVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPF 595

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
            P    W ++++G   +G  +      + L K   Q D
Sbjct: 596 EPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 211/488 (43%), Gaps = 88/488 (18%)

Query: 48  VHSHLKSSGF---KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC--SYNTMISGF 102
           +H+ L +S      P   ++  L+ +Y    ++  A TLF      D C  S  ++++ +
Sbjct: 43  LHARLLTSALLHAPPHPHLTLRLIHLYTLSRDLPAAATLFCA----DPCPVSATSLVAAY 98

Query: 103 TKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
                L  A + FD +P  +RD     A+IS Y R +    A+ ++R +    +   + +
Sbjct: 99  AAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDY 158

Query: 161 TLSSVLSAVSAIQ--CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS---INEARQ 215
           + +++LSA   +    +R   ++H  ++++G      V +AL  +Y KC S     +AR+
Sbjct: 159 SFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARK 218

Query: 216 IFDKMVDRDVVSWT-------------------------------AMIGRYFQEGRREEG 244
           + D+M ++D ++WT                               AMI  Y   G   E 
Sbjct: 219 VLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEA 278

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA----SA 300
           F LF  ++   +  + FTF  VL+ACA+      GK VHG + R+  +    AA    +A
Sbjct: 279 FELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNA 338

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE---------- 350
           LV  YSKCGN+  ++++F+ M   D+VSW ++++GY ++   DKA+E FE          
Sbjct: 339 LVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSW 398

Query: 351 LLLKSG---------------------TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           +++ SG                      +P    + G + AC   G +  G Q  H    
Sbjct: 399 MVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ-LHGHIV 457

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           + G   +      ++ + AR G   EA  +   MP   D   W +++     HG+     
Sbjct: 458 QLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQHGH----G 512

Query: 450 RAAEALFE 457
           R A  LF+
Sbjct: 513 REALELFD 520



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 38/248 (15%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL++ +++      P    Y+  I  C +  AL+ GK++H H+   GF+      N L
Sbjct: 412 EDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNAL 471

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+CG + +A  +F  M   D  S+N MIS   + G   +A  LFD M         
Sbjct: 472 ITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVA------- 524

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                    E    ++ +  +VL+A +    +  G      + R
Sbjct: 525 -------------------------EGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKR 559

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEGF 245
             G    E  ++ L D+ G+ G I EAR +   M      S W A++      G  E G 
Sbjct: 560 DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGA 619

Query: 246 ALFSELIK 253
               +L K
Sbjct: 620 HAADQLFK 627


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 257/446 (57%), Gaps = 33/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           SS++Q C    A++ G +VH  +   GF   +F+ + L DMY+KCG +SDA         
Sbjct: 180 SSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDA--------- 230

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
              C                     F+EMP +D   WT+MI G+V+     +AL  Y  M
Sbjct: 231 ---C-------------------KAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKM 268

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
              ++   ++  L S LSA SA++    GK +H  I++ GF+ +  + +AL+DMY K G 
Sbjct: 269 VT-DDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGD 327

Query: 210 INEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +  A  +F    D   +VS TA+I  Y +  + E+  + F +L + GI PN FTF  ++ 
Sbjct: 328 MVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIK 387

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA+ A  E G Q+HG + +  +    F +S LV MY KCG  ++S ++F+ +  PD ++
Sbjct: 388 ACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIA 447

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W +L+  ++Q+G+   A+E F  ++  G +P+ + FV +L  C+HAG+V+ GL YF S++
Sbjct: 448 WNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSME 507

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + +G+    +HY+C++DLL R+G+  EAED I+ MP +P+ F W S LG C+IHG+++ A
Sbjct: 508 KIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERA 567

Query: 449 KRAAEALFEIEPENPATYVTMANIYA 474
           K AA+ L ++EPEN   +V ++NIYA
Sbjct: 568 KFAADKLMKLEPENSGAHVLLSNIYA 593



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 210/425 (49%), Gaps = 38/425 (8%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           LIQ   + + L +GK++H+ L   G  P  F+SN  L++Y+KCG                
Sbjct: 81  LIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGE--------------- 125

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                           L+    LFD+M QR+  SWT++I+G+   ++  EAL  +  M+ 
Sbjct: 126 ----------------LDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMR- 168

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            E  ++ +F LSSVL A +++  ++ G ++H  +++ GF  +  V S L+DMY KCG ++
Sbjct: 169 IEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELS 228

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A + F++M  +D V WT+MI  + + G  ++    + +++   +  +       L+AC+
Sbjct: 229 DACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWT 330
              A   GK +H  + ++G++  +F  +AL  MYSK G++ ++  VF        +VS T
Sbjct: 289 ALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLT 348

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++I GY +    +KAL  F  L + G +P+   F  ++ AC +   ++ G Q  H    K
Sbjct: 349 AIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQ-LHGQVVK 407

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
                     + +VD+  + G F  +  +  ++   PD+  W +L+G    HG   L + 
Sbjct: 408 FNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHG---LGRN 463

Query: 451 AAEAL 455
           A E  
Sbjct: 464 AIETF 468



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 4/285 (1%)

Query: 138 QPIEALDLYRMMQNFENS---VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           + +E +  +  ++N   S   +S+  T++ ++   +  + L  GK++H  ++R G   + 
Sbjct: 51  EGVEEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNT 110

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            + +   ++Y KCG ++   ++FDKM  R++VSWT++I  +    R +E  + F ++   
Sbjct: 111 FLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIE 170

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G     F  + VL AC    A + G QVH  + + G+    F  S L  MYSKCG + ++
Sbjct: 171 GEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDA 230

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            K F  MP  D V WTS+I G+ +NG   KAL  +  ++      D  V    L+AC+  
Sbjct: 231 CKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSAL 290

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
                G +  H+   K G  Y       + D+ ++SG    A +V
Sbjct: 291 KASSFG-KSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNV 334



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 147/321 (45%), Gaps = 35/321 (10%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +  S +  C   +A   GK +H+ +   GF+   FI N L DMY+K G++  A  +F   
Sbjct: 279 VLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIH 338

Query: 88  QE-RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
            +   + S   +I G+ +   +E+A + F ++ +R                  IE     
Sbjct: 339 SDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRG-----------------IEP---- 377

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
                      N+FT +S++ A +    L  G ++HG +++  F  D  V S L DMYGK
Sbjct: 378 -----------NEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGK 426

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG  + + Q+FD++ + D ++W  ++G + Q G        F+ +I  G++PNA TF  +
Sbjct: 427 CGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNL 486

Query: 267 LNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RP 324
           L  C+     E G      M +I G  P     S ++ +  + G ++ ++   N MP  P
Sbjct: 487 LKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEP 546

Query: 325 DLVSWTSLIAGYAQNGMPDKA 345
           ++  W S +     +G  ++A
Sbjct: 547 NVFGWCSFLGACKIHGDMERA 567



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 40/215 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++SLI+ C     LE G ++H  +    FK   F+S+ L+DMY KCG    +  L
Sbjct: 377 PNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQL 436

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQP 139
           FDE++  D  ++NT++  F++ G    A   F+ M  R    +  ++  ++ G       
Sbjct: 437 FDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMV 496

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            + L+ +  M+                             +I+G + +      E  +S 
Sbjct: 497 EDGLNYFSSME-----------------------------KIYGVVPK------EEHYSC 521

Query: 200 LSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           + D+ G+ G + EA    + M  + +V  W + +G
Sbjct: 522 VIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLG 556


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 259/492 (52%), Gaps = 63/492 (12%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L++L +   P    +  L +   ++ ALE G+++H H+   G +  VF+   L+ MY  C
Sbjct: 107 LEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC 166

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G                                L+ AR +FD  P+ D  +W  +IS Y 
Sbjct: 167 G-------------------------------QLDTARGVFDVCPKADVITWNMIISAYN 195

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +  +  E+  L+ +M++ +  +    TL  VLSA S ++ LR GK++H Y+     +S+ 
Sbjct: 196 KVGKFEESRRLFLVMED-KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 254

Query: 195 VVWSALSDMYGKCGS-------------------------------INEARQIFDKMVDR 223
           V+ +A+ DMY  CG                                I+ AR  FDKM ++
Sbjct: 255 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEK 314

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           D VSWTAMI  Y +  R +E   LF  +  + ++P+ FT   VL ACA   A ELG+ + 
Sbjct: 315 DYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIR 374

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y+ R       F  +AL+ MY KCG+V+ ++ +F  M + D  +WT++I G A NG  +
Sbjct: 375 TYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGE 434

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           KAL+ F  +LK+   PD I ++GVL+ACTH GLVDKG +YF  +  +HG+     HY C+
Sbjct: 435 KALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCL 494

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLLAR+GR  EA +VI  MP+K +  +W +LL GCR++   D+A+   + + E+EP+N 
Sbjct: 495 VDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNG 554

Query: 464 ATYVTMANIYAS 475
           A YV + NIYA+
Sbjct: 555 AVYVLLCNIYAA 566



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 177/370 (47%), Gaps = 34/370 (9%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G  + AR LFDE+P+ + F W  MI GY R + P   + LY  M        +++T   +
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFPFL 124

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
               +    L  G+++HG++++ G   +  V +AL  MY  CG ++ AR +FD     DV
Sbjct: 125 FKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADV 184

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           ++W  +I  Y + G+ EE   LF  +    + P   T   VL+AC+       GK+VH Y
Sbjct: 185 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 244

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG----- 340
           +     +      +A++ MY+ CG ++++  +F  M   D++SWT++++G+   G     
Sbjct: 245 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 304

Query: 341 ------MPDK--------------------ALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
                 MP+K                    ALE F  +  +  +PD    V VLTAC H 
Sbjct: 305 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 364

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G ++ G ++  +  +++ +         ++D+  + G   +AE +  +M  + DKF W +
Sbjct: 365 GALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTA 422

Query: 435 LLGGCRIHGN 444
           ++ G  ++G+
Sbjct: 423 MIVGLAVNGH 432



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC----GSINEARQIFDKM 220
           ++S +   + +   +++H   ++ G +++ V+ + +  M   C    G    AR++FD++
Sbjct: 21  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRV--MTFCCTHEYGDFQYARRLFDEI 78

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            + ++  W  MI  Y +    + G +L+ E+++ G++P+ +TF  +        A E G+
Sbjct: 79  PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGR 138

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+HG++ + G     F  +ALV MY  CG ++ ++ VF+  P+ D+++W  +I+ Y + G
Sbjct: 139 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 198

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             +++   F ++      P  +  V VL+AC+    +  G +  HS  +   +       
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVESNLVLE 257

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
             ++D+ A  G    A  +   M  + D   W +++ G    G +D+A+
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVAR 305


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 249/450 (55%), Gaps = 42/450 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG--NISDAQTLFDE 86
           Y  L++ C     L   + +H H++  GF   +F+ N L+D Y+KCG   ++ A  LF E
Sbjct: 124 YPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFME 183

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M E+D+ S+N+MI G  K G L +AR LFDEM +RD  SW  ++ GYV+  +  +A +L+
Sbjct: 184 MGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLF 243

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M                                         + + V WS +   Y K
Sbjct: 244 EKMP----------------------------------------ERNVVSWSTMVSGYCK 263

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G +  AR +FDKM  +++V+WT +I  + ++G  +E   L++++  +G++P+  T   +
Sbjct: 264 TGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISI 323

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L ACA+     LGK+VH  + +I        ++ALV MY+KCG V+ +  +FN M   DL
Sbjct: 324 LAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDL 383

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSW  ++ G A +G  +KA++ F  + + G +PD +  + +L ACTHAG VD+GL YF+S
Sbjct: 384 VSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNS 443

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           ++  HG+    +HY C++DLL R GR  EA  ++  MPM+P+  +W +LLG CR+H  + 
Sbjct: 444 MERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVP 503

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA++  + L  +E  +P  Y  ++NI+A+A
Sbjct: 504 LAEKVLDRLITLEQSDPGNYSMLSNIFAAA 533



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           KE+H  I++    +D  V   L   +  C  +N A  +F+++ D +V  +  +I  + Q 
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            +  + FA F ++ K+G+  + FT+  +L AC         + +H ++ + G+    F  
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVP 159

Query: 299 SALVHMYSKCG--NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
           ++L+  YSKCG   V  + K+F  M   DLVSW S+I G  + G   +A + F+ +    
Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM---- 215

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            + D + +  +L     AG + +    F  + E++ ++++      +V    ++G    A
Sbjct: 216 AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWST-----MVSGYCKTGDMEMA 270

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
             +  KMP K +   W  ++ G    G   LAK A     ++E
Sbjct: 271 RMLFDKMPFK-NLVTWTIIISGFAEKG---LAKEATTLYNQME 309



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 12/205 (5%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+     R+ +AL I +++S      ++ ++Q    +   E+  ++ S ++  GFKP  
Sbjct: 359 VDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDK 418

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERD------VCSYNTMISGFTKGGSLEQARNLF 115
                +L      G +    + F+ M ERD      +  Y  MI    +GG LE+A  L 
Sbjct: 419 VTLIAILCACTHAGFVDQGLSYFNSM-ERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLV 477

Query: 116 DEMPQRDN-FSWTAMISGYVRYNQ-PIEALDLYRMMQNFENSVSNKFTLSSVLSAV---S 170
             MP   N   W  ++     +N  P+    L R++   ++   N   LS++ +A    +
Sbjct: 478 QSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWN 537

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEV 195
           ++  +RL  +  G    +G  S E+
Sbjct: 538 SVANMRLQMKSTGVQKPSGASSIEL 562


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 161/433 (37%), Positives = 253/433 (58%), Gaps = 32/433 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  GK+VH +   SG    + + + L  +Y+KCG                          
Sbjct: 466 LNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCG-------------------------- 499

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
                SLE++  LF  +P +DN  W +MISG+  Y    EA+ L+  M + + +  ++ T
Sbjct: 500 -----SLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLD-DGTSPDEST 553

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L++VL+  S+   L  GKEIHGY +R G D    + SAL +MY KCGS+  ARQ++D++ 
Sbjct: 554 LAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLP 613

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
           + D VS +++I  Y Q G  ++GF LF +++ SG   ++F  + +L A A      LG Q
Sbjct: 614 ELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQ 673

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH Y+T+IG        S+L+ MYSK G++++  K F+ +  PDL++WT+LIA YAQ+G 
Sbjct: 674 VHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGK 733

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            ++AL+ + L+ + G +PD + FVGVL+AC+H GLV++   + +S+ + +G+     HY 
Sbjct: 734 ANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYV 793

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C+VD L RSGR  EAE  I+ M +KPD  +W +LL  C+IHG ++L K AA+   E+EP 
Sbjct: 794 CMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPS 853

Query: 462 NPATYVTMANIYA 474
           +   Y++++NI A
Sbjct: 854 DAGAYISLSNILA 866



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 221/447 (49%), Gaps = 48/447 (10%)

Query: 14  ALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           AL+I  ++ H    I     +S+I  C +   + E  +VH+ +  SGF     ++  L+ 
Sbjct: 335 ALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALIS 394

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY+K G+I  ++ +F+++ +                              QR N     M
Sbjct: 395 MYSKSGDIDLSEQVFEDLDD-----------------------------IQRQNIV-NVM 424

Query: 130 ISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           I+ + +  +P +A+ L+ RM+Q  E   +++F++ S+LS    + CL LGK++HGY +++
Sbjct: 425 ITSFSQSKKPGKAIRLFTRMLQ--EGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKS 479

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G   D  V S+L  +Y KCGS+ E+ ++F  +  +D   W +MI  + + G   E   LF
Sbjct: 480 GLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLF 539

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           SE++  G  P+  T A VL  C+ H +   GK++HGY  R G D      SALV+MYSKC
Sbjct: 540 SEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKC 599

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+++ +++V++ +P  D VS +SLI+GY+Q+G+       F  ++ SG   D      +L
Sbjct: 600 GSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSIL 659

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            A   +     G Q  H+   K GL       + ++ + ++ G   +     S++   PD
Sbjct: 660 KAAALSDESSLGAQ-VHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQIN-GPD 717

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEAL 455
              W +L+     HG      +A EAL
Sbjct: 718 LIAWTALIASYAQHG------KANEAL 738



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 215/467 (46%), Gaps = 40/467 (8%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-----GV 61
           N   + +A ++   I  P     + +I   +Q+R  EE  +  S +   GF+      G 
Sbjct: 96  NSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGS 155

Query: 62  FISNC------LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
            IS C      L      C  I      ++ ++       + +I  F+K    E A  +F
Sbjct: 156 VISACSALQAPLFSELVCCHTIKMGYFFYEVVE-------SALIDVFSKNLRFEDAYKVF 208

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQC 174
            +    + + W  +I+G +R        DL+  M   F+    + +T SSVL+A ++++ 
Sbjct: 209 RDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKP--DSYTYSSVLAACASLEK 266

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           LR GK +   +++ G + D  V +A+ D+Y KCG + EA ++F ++ +  VVSWT M+  
Sbjct: 267 LRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSG 325

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Y +         +F E+  SG+  N  T   V++AC   +      QVH ++ + G+   
Sbjct: 326 YTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLD 385

Query: 295 SFAASALVHMYSKCGNVENSKKVF---NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           S  A+AL+ MYSK G+++ S++VF   + + R ++V+   +I  ++Q+  P KA+  F  
Sbjct: 386 SSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKAIRLFTR 443

Query: 352 LLKSGTQPDHIVFVGVLTA--CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           +L+ G + D      +L+   C + G      +  H    K GL       + +  L ++
Sbjct: 444 MLQEGLRTDEFSVCSLLSVLDCLNLG------KQVHGYTLKSGLVLDLTVGSSLFTLYSK 497

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
            G   E+  +   +P K D   WAS++ G   +G L    R A  LF
Sbjct: 498 CGSLEESYKLFQGIPFK-DNACWASMISGFNEYGYL----REAIGLF 539



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 8/267 (2%)

Query: 175 LRLGKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
           LR  K +  +++R      D  +  +L   Y   GS+ +A ++FD +   DVVS   MI 
Sbjct: 64  LRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMIS 123

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            Y Q    EE    FS++   G   N  ++  V++AC+   A    + V  +  ++GY  
Sbjct: 124 GYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFF 183

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
           Y    SAL+ ++SK    E++ KVF      ++  W ++IAG  +N       + F  + 
Sbjct: 184 YEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMC 243

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSG 411
               +PD   +  VL AC       + L++   ++ +       D + C  IVDL A+ G
Sbjct: 244 VGFQKPDSYTYSSVLAACASL----EKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCG 299

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGG 438
              EA +V S++P  P    W  +L G
Sbjct: 300 HMAEAMEVFSRIP-NPSVVSWTVMLSG 325



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 71/292 (24%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G +VH+++   G      + + LL MY+K G+I D    F ++   D+ ++  +I     
Sbjct: 671 GAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALI----- 725

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
                                     + Y ++ +  EAL +Y +M+  +    +K T   
Sbjct: 726 --------------------------ASYAQHGKANEALQVYNLMKE-KGFKPDKVTFVG 758

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           VLSA S           HG ++       E  +  L+ M    G   E R          
Sbjct: 759 VLSACS-----------HGGLV-------EESYFHLNSMVKDYGIEPENRH--------- 791

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
              +  M+    + GR  E  +  + +    I+P+A  +  +L AC  H   ELGK    
Sbjct: 792 ---YVCMVDALGRSGRLREAESFINNM---HIKPDALVWGTLLAACKIHGEVELGKVAAK 845

Query: 285 YMTRIGYDPYSFAAS-ALVHMYSKCG---NVENSKKVFNGMPRPDLVSWTSL 332
               I  +P    A  +L ++ ++ G    VE ++K+  G        W+S+
Sbjct: 846 --KAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 258/452 (57%), Gaps = 39/452 (8%)

Query: 63  ISNCLLDMYAKCGNIS---DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
           +SN L+ +Y KC  +    DA+ + DEM ++D  ++ TM+ G+ + G +  AR++F+E+ 
Sbjct: 196 VSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVD 255

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
            + +  W AMISGYV     +EA +L+R M   E    ++FT +SVLSA +       GK
Sbjct: 256 VKFDVVWNAMISGYVHSGMVVEAFELFRRMV-LERVPLDEFTFTSVLSACANAGFFAHGK 314

Query: 180 EIHGYIMR--TGFDSDEV--VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA----- 230
            +HG I R    F  +    V +AL  +Y KCG+I  AR+IFD M  +DVVSW       
Sbjct: 315 SVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGY 374

Query: 231 --------------------------MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
                                     M+  Y   G  E+   LF+ +    ++P  +T+A
Sbjct: 375 VESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYA 434

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           G ++AC +  + + GKQ+HG++ ++G++  + A +AL+ MY++CG V+ +  +F  MP  
Sbjct: 435 GAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNI 494

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D VSW ++I+   Q+G   +ALE F+ ++  G  PD I F+ VLTAC H+GLVD+G QYF
Sbjct: 495 DSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYF 554

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            S+K   G+    DHY  ++DLL R+GR  EA D+I  MP +P   +W ++L GCR  G+
Sbjct: 555 ESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGD 614

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++L   AA+ LF++ P++  TY+ ++N Y++A
Sbjct: 615 MELGAHAADQLFKMTPQHDGTYILLSNTYSAA 646



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 216/488 (44%), Gaps = 88/488 (18%)

Query: 48  VHSHLKSSGF---KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC--SYNTMISGF 102
           +H+ L +S      P   ++  L+ +Y   G++  A TLF      D C  +  ++++ +
Sbjct: 43  LHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPAAATLF----RADPCPVAATSLVAAY 98

Query: 103 TKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
              G L  A + FD +PQ  RD     A+IS Y R +    A+ ++R +    +   + +
Sbjct: 99  AAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDY 158

Query: 161 TLSSVLSAVSAIQ--CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI---NEARQ 215
           + +++LSA   +    +R   ++   ++++G      V +AL  +Y KC ++    +AR+
Sbjct: 159 SFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARK 218

Query: 216 IFDKMVDRDVVSWT-------------------------------AMIGRYFQEGRREEG 244
           + D+M D+D ++WT                               AMI  Y   G   E 
Sbjct: 219 VLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEA 278

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA----SA 300
           F LF  ++   +  + FTF  VL+ACA+      GK VHG +TR+  +    AA    +A
Sbjct: 279 FELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNA 338

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE---------- 350
           LV +YSKCGN+  ++++F+ M   D+VSW ++++GY ++   DKA+E FE          
Sbjct: 339 LVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSW 398

Query: 351 LLLKSG---------------------TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           +++ SG                      +P    + G ++AC   G +  G Q  H    
Sbjct: 399 MVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQ-LHGHLV 457

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           + G   +      ++ + AR G   EA  +   MP   D   W +++     HG+     
Sbjct: 458 QLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQHGH----G 512

Query: 450 RAAEALFE 457
           R A  LF+
Sbjct: 513 REALELFD 520



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL++ +++      P    Y+  I  C +  +L+ GK++H HL   GF+      N L
Sbjct: 412 EDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNAL 471

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+CG + +A  +F  M   D  S+N MIS   + G   +A  LFD M         
Sbjct: 472 ITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVA------- 524

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                    E    ++ +  +VL+A +    +  G +    + R
Sbjct: 525 -------------------------EGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKR 559

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEGF 245
             G    E  ++ L D+ G+ G I EAR +   M      S W A++      G  E G 
Sbjct: 560 DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGA 619

Query: 246 ALFSELIK 253
               +L K
Sbjct: 620 HAADQLFK 627


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 259/492 (52%), Gaps = 63/492 (12%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L++L +   P    +  L +   ++ ALE G+++H H+   G +  VF+   L+ MY  C
Sbjct: 128 LEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC 187

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G                                L+ AR +FD  P+ D  +W  +IS Y 
Sbjct: 188 G-------------------------------QLDTARGVFDVCPKADVITWNMIISAYN 216

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +  +  E+  L+ +M++ +  +    TL  VLSA S ++ LR GK++H Y+     +S+ 
Sbjct: 217 KVGKFEESRRLFLVMED-KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 275

Query: 195 VVWSALSDMYGKCGS-------------------------------INEARQIFDKMVDR 223
           V+ +A+ DMY  CG                                I+ AR  FDKM ++
Sbjct: 276 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEK 335

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           D VSWTAMI  Y +  R +E   LF  +  + ++P+ FT   VL ACA   A ELG+ + 
Sbjct: 336 DYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIR 395

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y+ R       F  +AL+ MY KCG+V+ ++ +F  M + D  +WT++I G A NG  +
Sbjct: 396 TYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGE 455

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           KAL+ F  +LK+   PD I ++GVL+ACTH GLVDKG +YF  +  +HG+     HY C+
Sbjct: 456 KALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCL 515

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLLAR+GR  EA +VI  MP+K +  +W +LL GCR++   D+A+   + + E+EP+N 
Sbjct: 516 VDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNG 575

Query: 464 ATYVTMANIYAS 475
           A YV + NIYA+
Sbjct: 576 AVYVLLCNIYAA 587



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 177/370 (47%), Gaps = 34/370 (9%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G  + AR LFDE+P+ + F W  MI GY R + P   + LY  M        +++T   +
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFPFL 145

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
               +    L  G+++HG++++ G   +  V +AL  MY  CG ++ AR +FD     DV
Sbjct: 146 FKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADV 205

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           ++W  +I  Y + G+ EE   LF  +    + P   T   VL+AC+       GK+VH Y
Sbjct: 206 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 265

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG----- 340
           +     +      +A++ MY+ CG ++++  +F  M   D++SWT++++G+   G     
Sbjct: 266 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 325

Query: 341 ------MPDK--------------------ALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
                 MP+K                    ALE F  +  +  +PD    V VLTAC H 
Sbjct: 326 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 385

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G ++ G ++  +  +++ +         ++D+  + G   +AE +  +M  + DKF W +
Sbjct: 386 GALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTA 443

Query: 435 LLGGCRIHGN 444
           ++ G  ++G+
Sbjct: 444 MIVGLAVNGH 453



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC----GSINEARQIFDKM 220
           ++S +   + +   +++H   ++ G +++ V+ + +  M   C    G    AR++FD++
Sbjct: 42  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRV--MTFCCTHEYGDFQYARRLFDEI 99

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            + ++  W  MI  Y +    + G +L+ E+++ G++P+ +TF  +        A E G+
Sbjct: 100 PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGR 159

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+HG++ + G     F  +ALV MY  CG ++ ++ VF+  P+ D+++W  +I+ Y + G
Sbjct: 160 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 219

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             +++   F ++      P  +  V VL+AC+    +  G +  HS  +   +       
Sbjct: 220 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVESNLVLE 278

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
             ++D+ A  G    A  +   M  + D   W +++ G    G +D+A+
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVAR 326


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 258/455 (56%), Gaps = 12/455 (2%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   ++ SL++     +     + +H+ +   GF   ++ +N L++MY+K          
Sbjct: 74  PDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHE 133

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F + +      Y+  I         +  R LFD MP RD  SW  +I+G  +     EAL
Sbjct: 134 FPQARHNHNNKYSVKI---------DSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEAL 184

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           ++ + M   EN   + FTLSS+L   +    +  GKEIHGY +R GFD D  + S+L DM
Sbjct: 185 NMVKEMGK-ENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDM 243

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +  +   F  + +RD +SW ++I    Q GR ++G   F  ++K  ++P   +F
Sbjct: 244 YAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSF 303

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG--M 321
           + V+ ACA   A  LGKQ+H Y+ R+G+D   F AS+L+ MY+KCGN++ ++ +FN   M
Sbjct: 304 SSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEM 363

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+VSWT++I G A +G    A+  FE +L  G +P ++ F+ VLTAC+HAGLVD+G 
Sbjct: 364 CDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGW 423

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           +YF+S++   G+    +HYA + DLL R+GR  EA D IS M  +P   +W++LL  CR 
Sbjct: 424 KYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRA 483

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           H N++LA++    +  ++P N   +V M+NIY++A
Sbjct: 484 HKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAA 518



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 24/243 (9%)

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           ++W  +I  Y   G      A F+ L   GI P+   F  +L A        L + +H  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 286 MTRIGYDPYSFAASALVHMYSK----------------------CGNVENSKKVFNGMPR 323
           + R+G+    + A+AL++MYSK                         +++ +K+F+ MP 
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSW ++IAG AQNGM ++AL   + + K   +PD      +L   T    V KG + 
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKE- 220

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    +HG        + ++D+ A+  +  E       +    D   W S++ GC  +G
Sbjct: 221 IHGYAIRHGFDKDVFIGSSLIDMYAKCTQV-ELSVCAFHLLSNRDAISWNSIIAGCVQNG 279

Query: 444 NLD 446
             D
Sbjct: 280 RFD 282



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 48/332 (14%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +R LKE ++       P    +SS+I  C    AL  GK++H+++   GF    FI++ L
Sbjct: 289 RRMLKEKVK-------PMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSL 341

Query: 68  LDMYAKCGNISDAQTLFD--EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
           LDMYAKCGNI  A+ +F+  EM +RD+ S+  +I G    G    A +LF+EM       
Sbjct: 342 LDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM------- 394

Query: 126 WTAMISG----YVRYNQPIEALDLYRMMQ---NFENSVSNKFTLSSVLSAVSAIQCL--R 176
              ++ G    YV +   + A     ++     + NS+   F ++  L   +A+  L  R
Sbjct: 395 ---LVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGR 451

Query: 177 LGK--EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA---M 231
            G+  E + +I   G +    VWS L        +I  A ++ +K++  D  +  A   M
Sbjct: 452 AGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIM 511

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM----T 287
              Y    R  +   L   + K+G++           AC   +  E+G +VH ++    +
Sbjct: 512 SNIYSAAQRWRDAAKLRVRMRKTGLKKTP--------AC---SWIEVGNKVHTFLAGDKS 560

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
              YD  + A + L+    K G V ++ +V +
Sbjct: 561 HPYYDKINEALNILLEQMEKEGYVLDTNEVLH 592


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 167/480 (34%), Positives = 276/480 (57%), Gaps = 6/480 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D  C    L  A Q+   + +     ++SL+         EE  ++   L +SG KP  
Sbjct: 182 VDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSD 241

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERD----VCSYNTMISGFTKGGSLEQARNLFDE 117
           F    LL       +    Q +   + + +    V   N ++  ++K   +++   LF E
Sbjct: 242 FTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXE 301

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+ D  S+  +I+ Y    Q  E+ DL+R +Q F      +F  +++LS  ++   LR+
Sbjct: 302 MPELDGISYNVVITSYAWNGQFKESFDLFRKLQ-FTRFDRRQFPFATLLSIATSSLNLRM 360

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++IH   +  G + +  V +AL DMY KC    EA++IFD +  +  V WTAMI  Y Q
Sbjct: 361 GRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQ 420

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G+ EEG  +FS++ ++G+  +  TFA +L ACA+ A+  LG+Q+H  + R G+    ++
Sbjct: 421 KGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYS 480

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            SAL+  Y+KCG + ++ K F  MP  + VSW +LI+ YAQNG  D  L  F+ +++SG 
Sbjct: 481 GSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGY 540

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD + F+ VL+AC+H G V++ L +F+S+ + + +T   +HY  +VD+L R+GRF EAE
Sbjct: 541 KPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAE 600

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
            ++++MP +P + +W+S+L  CRIH N +LAK+AA+ LF +E   + A Y+ M+NIYA A
Sbjct: 601 KLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVA 660



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 201/398 (50%), Gaps = 3/398 (0%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           +L     + +H+  +GF P    SN  ++ + + G++  A  +FD+M  ++  S N MIS
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G  K G L +AR LFD M +R   SWT +I GY++ NQ  EA  LY  M+       +  
Sbjct: 83  GHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR-GGIEPDYV 141

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TL ++LS    ++   +  +IH ++++ G++ + +V ++L D Y K   +  A Q+F  M
Sbjct: 142 TLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHM 201

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
           +++D V++ +++  Y  EG  EE   LF EL  SGI+P+ FTFA +L+A       + G+
Sbjct: 202 LNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQ 261

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           QVHG++ +  +    F  +AL+  YSK   V+   K+F  MP  D +S+  +I  YA NG
Sbjct: 262 QVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNG 321

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              ++ + F  L  +        F  +L+  T +  +  G Q  H      G  + +   
Sbjct: 322 QFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQ-IHCQAITVGANFESRVE 380

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             +VD+ A+     EA+ +   +  K     W +++  
Sbjct: 381 NALVDMYAKCNGDKEAQKIFDNIACK-STVPWTAMISA 417


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/510 (33%), Positives = 279/510 (54%), Gaps = 44/510 (8%)

Query: 4   ILCNQ---RRLKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKP 59
           ++CN    RRL EA ++  Q+  P  S+Y+ +I  + R NR ++                
Sbjct: 41  LICNHLLNRRLDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSW 100

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
              IS C+     +CG+I  A  +FDEM ER V S+  M++G  + G ++QA  LF +MP
Sbjct: 101 NSMISGCV-----ECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMP 155

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMM----------------QN---------FEN 154
            +D  +W AM+ GY+++ +  +AL L++ M                QN         F+N
Sbjct: 156 VKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKN 215

Query: 155 SV-----SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
            +     S   T + V++A +      +G ++HG+I+++GF  +E V ++L  +Y  C  
Sbjct: 216 MLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKR 275

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
             ++R++F +MV   V  WTA++  Y    + E+   +FSE+I++ I PN  TFA  LN+
Sbjct: 276 TEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNS 335

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+     + GK++HG   ++G    +F  ++LV MYS  GNV ++  VF  + +  +VSW
Sbjct: 336 CSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSW 395

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            S+I G AQ+G    A   F  +++   +PD I F G+L+AC+H G + KG + F+ I  
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISS 455

Query: 390 KHGLTYT---ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
             GL +      HY C+VD+L R G   EAE +I  M +KP++ +W +LL  CR+H ++D
Sbjct: 456 --GLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVD 513

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
             ++AA A+F ++ ++ A YV ++NIYASA
Sbjct: 514 RGEKAAAAIFNLDSKSSAAYVLLSNIYASA 543


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 244/434 (56%), Gaps = 32/434 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  GK +H+     GF    F+ N L  MY KCG                          
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKA------------------------ 309

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
                  +    LF++M   D  SWT +I+ YV+  +   A++ ++ M+   N   NK+T
Sbjct: 310 -------DYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRK-SNVSPNKYT 361

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
            ++V+SA + +   + G++IHG+++R G      V +++  +Y K G +  A  +F  + 
Sbjct: 362 FAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGIT 421

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            +D++SW+ +I  Y Q G  +E F   S + + G +PN F  + VL+ C   A  E GKQ
Sbjct: 422 RKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQ 481

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH ++  IG D  +   SAL+ MYSKCG+VE + K+FNGM   +++SWT++I GYA++G 
Sbjct: 482 VHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGY 541

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             +A+  FE +   G +PD++ F+GVLTAC+HAG+VD G  YF  +  ++ ++ + +HY 
Sbjct: 542 SQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYG 601

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           CI+DLL R+GR  EAE +I  MP   D  +W++LL  CR+HG++D  +  AE L  ++P 
Sbjct: 602 CIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPN 661

Query: 462 NPATYVTMANIYAS 475
           +  T++ +ANIYA+
Sbjct: 662 SAGTHIALANIYAA 675



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 202/399 (50%), Gaps = 34/399 (8%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+ +H     SG    VF+S+ L+DMY K G I     +F +M +R+V S+  +I+G   
Sbjct: 176 GELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVH 235

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G   +A   F EM       W + + GY                        +  T + 
Sbjct: 236 AGYNMEALLYFSEM-------WISKV-GY------------------------DSHTFAI 263

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
            L A +    L  GK IH   ++ GFD    V + L+ MY KCG  +   ++F+KM   D
Sbjct: 264 ALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPD 323

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           VVSWT +I  Y Q+G  E     F  + KS + PN +TFA V++ACA+ A  + G+Q+HG
Sbjct: 324 VVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHG 383

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           ++ R+G       A+++V +YSK G ++++  VF+G+ R D++SW+++IA Y+Q G   +
Sbjct: 384 HVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKE 443

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           A +Y   + + G +P+      VL+ C    L+++G Q  H+     G+ + A  ++ ++
Sbjct: 444 AFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQ-VHAHVLCIGIDHEAMVHSALI 502

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            + ++ G   EA  + + M +  +   W +++ G   HG
Sbjct: 503 SMYSKCGSVEEASKIFNGMKIN-NIISWTAMINGYAEHG 540



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 183/368 (49%), Gaps = 5/368 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+ +    K G L ++R +FD+M  RD  SWT +I+GYV  +   EAL L+  M      
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             ++F +S  L A      +  G+ +HG+ +++G  +   V SAL DMY K G I +  +
Sbjct: 154 QRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCR 213

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F KM  R+VVSWTA+I      G   E    FSE+  S +  ++ TFA  L A AD + 
Sbjct: 214 VFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSL 273

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              GK +H    + G+D  SF  + L  MY+KCG  +   ++F  M  PD+VSWT+LI  
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q G  + A+E F+ + KS   P+   F  V++AC +  +   G Q  H    + GL  
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQ-IHGHVLRLGLVD 392

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
                  IV L ++SG    A  V   +  K D   W++++    ++     AK A + L
Sbjct: 393 ALSVANSIVTLYSKSGLLKSASLVFHGITRK-DIISWSTIIA---VYSQGGYAKEAFDYL 448

Query: 456 FEIEPENP 463
             +  E P
Sbjct: 449 SWMRREGP 456



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 165/351 (47%), Gaps = 36/351 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++++I  C      + G+++H H+   G    + ++N ++ +Y+K G +  A  +
Sbjct: 357 PNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLV 416

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  +  +D+ S++T+I+ +++GG  ++A          D  SW                 
Sbjct: 417 FHGITRKDIISWSTIIAVYSQGGYAKEA---------FDYLSW----------------- 450

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                    E    N+F LSSVLS   ++  L  GK++H +++  G D + +V SAL  M
Sbjct: 451 ------MRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISM 504

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+ EA +IF+ M   +++SWTAMI  Y + G  +E   LF ++   G++P+  TF
Sbjct: 505 YSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTF 564

Query: 264 AGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            GVL AC+     +LG      MT      P       ++ +  + G +  ++ +   MP
Sbjct: 565 IGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMP 624

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK--SGTQPDHIVFVGVLTA 370
              D V W++L+     +G  D+     E LL+    +   HI    +  A
Sbjct: 625 CYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAA 675



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 34/268 (12%)

Query: 24  PSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           P P+ +  SS++  C     LE+GK+VH+H+   G      + + L+ MY+KCG++ +A 
Sbjct: 456 PKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEAS 515

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +F+ M+  ++ S+  MI+G+ + G  ++A NLF+++      S   +   YV +   + 
Sbjct: 516 KIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKI------SSVGLKPDYVTFIGVLT 569

Query: 142 A--------LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLGK--EIHGYIMRTG 189
           A        L  Y  M      ++N++ +S        I  L  R G+  E    I    
Sbjct: 570 ACSHAGMVDLGFYYFML-----MTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMP 624

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS---WTAMIGRYFQEGRREEGFA 246
             +D+VVWS L       G ++  R   ++++  D  S     A+   Y  +GR +E  A
Sbjct: 625 CYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEA-A 683

Query: 247 LFSELIKSG--IRPNAFTFAGV---LNA 269
              +L+KS   I+   +++  V   LNA
Sbjct: 684 HIRKLMKSKGVIKERGWSWVNVNDKLNA 711


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 164/497 (32%), Positives = 274/497 (55%), Gaps = 63/497 (12%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L   L++ +Q   P+   Y+S++  C     LE G  +H+ +        V +  CL D+
Sbjct: 231 LNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARI--------VRMEPCL-DV 281

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           YA CG                      +I  + K G LE AR +FD + + +  SWT++I
Sbjct: 282 YAGCG----------------------LIDMYAKCGRLESARQVFDGLTEHNAVSWTSLI 319

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
            G  +     EAL L+  M+    + S++FTL++VL    + + + +G+++H + +  G 
Sbjct: 320 GGVAQAGFQEEALVLFNQMREVPVA-SDQFTLATVLGVCLSQKDISIGEQLHAHTITRGL 378

Query: 191 DSDEVVWSALSDMYGKCGSI-------------------------------NEARQIFDK 219
           DS   V +AL  MY KCG +                                +AR+ FDK
Sbjct: 379 DSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDK 438

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M +R+V+SW +M+  Y Q G  EEG  ++ ++++ G++ +  TF+  ++ACAD A   LG
Sbjct: 439 MPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILG 498

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
            Q+     ++G+      A+++V MYS+CG +E ++K+F+ +   +LVSW +++AGYAQN
Sbjct: 499 NQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQN 558

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G   K +E FE +L  G  PD I +V VL+ C+H+G V +G  YF S+ + HG++  ++H
Sbjct: 559 GQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEH 618

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
           + C+VDLL R+G+  +A+++I++MP KP+  +W +LL  CRIHGN  LA+ A + L E++
Sbjct: 619 FVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELD 678

Query: 460 PENPATYVTMANIYASA 476
            E P +Y  +ANIY+ +
Sbjct: 679 AEGPGSYCLLANIYSES 695



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/481 (29%), Positives = 226/481 (46%), Gaps = 62/481 (12%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S   Y S+ + C   R++   +K+H+ L   G K  +F+ N LL+MY+ CG ISDA  +F
Sbjct: 4   SQKFYESMKE-CASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVF 62

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
             +   +V S+NTMISGF   G + +A  LF++MP+RD+ SW +M+SGY           
Sbjct: 63  GGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGY----------- 111

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
                  F N       L + + A  ++  L+L  ++HG+  +  F  D  V +++ DMY
Sbjct: 112 -------FHNG-----ELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMY 159

Query: 205 GKC-------------------------------GSINEARQIFDKMVDRDVVSWTAMIG 233
            KC                               GS+ +A ++F KM +RD VSW  MI 
Sbjct: 160 IKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMIS 219

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
              Q G   E    F E+   G RPN+ T+A VL+AC      E G  +H  + R+    
Sbjct: 220 ILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCL 279

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             +A   L+ MY+KCG +E++++VF+G+   + VSWTSLI G AQ G  ++AL  F  + 
Sbjct: 280 DVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMR 339

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +     D      VL  C     +  G Q  H+     GL  +      +V + A+ G  
Sbjct: 340 EVPVASDQFTLATVLGVCLSQKDISIGEQ-LHAHTITRGLDSSVPVANALVTMYAKCGDV 398

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANI 472
            +A      MP++ D   W +++      G+++ A+      F+  PE N  ++ +M   
Sbjct: 399 WKANHAFELMPIR-DIISWTAMITAFSQAGDVEKARE----YFDKMPERNVISWNSMLAT 453

Query: 473 Y 473
           Y
Sbjct: 454 Y 454


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 276/514 (53%), Gaps = 40/514 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I +  N      A Q+   I  P P+  S+LI     +    E  K++S L+  G KP +
Sbjct: 19  IRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDM 78

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDE 117
            +        A  G+    + + D+        DV   N +I  + K   +E AR +FD+
Sbjct: 79  PVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDD 138

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  RD  SWT++ S YV+   P + +D++R M  +     N  T+SS+L A + ++ L+ 
Sbjct: 139 LVVRDVVSWTSLSSCYVKCGFPRKGMDVFREM-GWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIHG+ +R G   +  V SAL  +Y KC S+ EAR +FD M  RDVVSW  ++  YF+
Sbjct: 198 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 257

Query: 238 EGRREEGFALFSELIKSGIR-----------------------------------PNAFT 262
               E+GF+LF ++ + G+R                                   PN  T
Sbjct: 258 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 317

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            + +L AC+      +GK++H Y+ R        + +AL++MY+KCG++  S+ VF+ M 
Sbjct: 318 ISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR 377

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D+V+W ++I   A +G   +AL  F+ +L S  QP+ + F GVL+ C+H+ LV++G+Q
Sbjct: 378 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQ 437

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            F+S+   H +   A+HY+C+VD+ +R+GR +EA   I  MPM+P    W +LL  CR++
Sbjct: 438 IFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVY 497

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++LAK +A+ LFEIEP NP  YV++ NI  +A
Sbjct: 498 KNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 531



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 44/75 (58%)

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ +    G+   ++++F+ +P+PD  + ++LI+    +G+ ++A++ +  L + G +PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 361 HIVFVGVLTACTHAG 375
             VF+    AC  +G
Sbjct: 78  MPVFLAAAKACAVSG 92


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 156/504 (30%), Positives = 276/504 (54%), Gaps = 69/504 (13%)

Query: 10  RLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           + +EAL++ H +       P    +++L+  C   R   +G+++H+HL  +     + + 
Sbjct: 458 KAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 517

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
             L+ MY++CG                                L  A+ +F+ M +R+ +
Sbjct: 518 TELVHMYSECGR-------------------------------LNYAKEIFNRMAERNAY 546

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW +MI GY +  +  EAL L++ MQ       + F+LSS+LS+  ++   + G+E+H +
Sbjct: 547 SWNSMIEGYQQNGETQEALRLFKQMQ-LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNF 605

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSI-------------------------------NEA 213
           I+R   + + ++   L DMY KCGS+                               N+A
Sbjct: 606 IVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDA 665

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           + +FD+M  R+   W +++  Y  +G ++E F  F E+++S I  +  T   ++N C+  
Sbjct: 666 KNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSL 725

Query: 274 AAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
            A E G Q+H  + + G+   S    +ALV MYSKCG +  ++ VF+ M   ++VSW ++
Sbjct: 726 PALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAM 785

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I+GY+++G   +AL  +E + K G  P+ + F+ +L+AC+H GLV++GL+ F S++E + 
Sbjct: 786 ISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYN 845

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +   A+HY C+VDLL R+GR  +A++ + KMP++P+   W +LLG CR+H ++D+ + AA
Sbjct: 846 IEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAA 905

Query: 453 EALFEIEPENPATYVTMANIYASA 476
           + LFE++P+NP  YV M+NIYA+A
Sbjct: 906 QRLFELDPQNPGPYVIMSNIYAAA 929



 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 129/539 (23%), Positives = 246/539 (45%), Gaps = 106/539 (19%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC--------- 74
           P    ++S ++ C   R+ + GK+VHS L + GFK   F+ N L+DMYAKC         
Sbjct: 274 PDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKV 333

Query: 75  ----------------------GNISDAQTLFDEMQER---------------------- 90
                                 G+ +DA  LF  MQE                       
Sbjct: 334 FDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADI 393

Query: 91  -----------------DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
                            D+   + ++  ++K G +E+A  +F  + +R+  S+ A+++GY
Sbjct: 394 GKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY 453

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           V+  +  EAL+LY  MQ+ +    ++FT +++L+  +  +    G++IH +++R     +
Sbjct: 454 VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 513

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
            +V + L  MY +CG +N A++IF++M +R+  SW +MI  Y Q G  +E   LF ++  
Sbjct: 514 IIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL 573

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE- 312
           +GI+P+ F+ + +L++C   +  + G+++H ++ R   +        LV MY+KCG+++ 
Sbjct: 574 NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDY 633

Query: 313 ------------------------------NSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
                                         ++K +F+ M + +   W S++AGYA  G+ 
Sbjct: 634 AWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLK 693

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
            ++  +F  +L+S  + D +  V ++  C+    ++ G Q    I +K  +  +      
Sbjct: 694 KESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETA 753

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           +VD+ ++ G   +A  V   M  K +   W +++ G   HG      + A  L+E  P+
Sbjct: 754 LVDMYSKCGAITKARTVFDNMNGK-NIVSWNAMISGYSKHG----CSKEALILYEEMPK 807



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 219/442 (49%), Gaps = 36/442 (8%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           S  +P  YSSLIQ C  + + + GK +H+ + S+G+ P  ++   +L +YA+ G + D  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDD-- 124

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                     L  AR LF+EMP+R+  +W  MI  Y R +  +E
Sbjct: 125 --------------------------LCYARKLFEEMPERNLTAWNTMILAYARVDDYME 158

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
            L LY  M+   N  S+KFT  SV+ A  A++ +   +++   +++ G + +  V  AL 
Sbjct: 159 VLRLYGRMRGSGN-FSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALV 217

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D Y + G +++A    D++    VV+W A+I  Y +    EE + +F  ++K G+ P+ F
Sbjct: 218 DGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNF 277

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TFA  L  C    + + GKQVH  +   G+   +F  +AL+ MY+KC + E+  KVF+ M
Sbjct: 278 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 337

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              + V+W S+I+  AQ G  + AL  F  + +SG + +      +L A   AGL D G 
Sbjct: 338 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS--AGLADIGK 395

Query: 382 -QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            +  H    ++ L       + +VD+ ++ G   EA  V   + ++ ++  + +LL G  
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAGYV 454

Query: 441 IHGNLDLAKRAAEALFEIEPEN 462
             G    A+ A E   +++ E+
Sbjct: 455 QEGK---AEEALELYHDMQSED 473



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 205/427 (48%), Gaps = 55/427 (12%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL++  Q+      P     SS++  C      ++G+++H+ +  +  +    +   L
Sbjct: 562 QEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVL 621

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG++  A  ++D+  ++DV   N M+S F   G    A+NLFD+M QR+   W 
Sbjct: 622 VDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWN 681

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           ++++GY   N+ ++       ++  E+ +  +  T+ ++++  S++  L  G ++H  I+
Sbjct: 682 SILAGYA--NKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLII 739

Query: 187 RTGFDSDEVVW-SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           + GF +  VV  +AL DMY KCG+I +AR +FD M  +++VSW AMI  Y + G  +E  
Sbjct: 740 KKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEAL 799

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA----- 300
            L+ E+ K G+ PN  TF  +L+AC+     E G ++   M     + Y+  A A     
Sbjct: 800 ILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQ----EDYNIEAKAEHYTC 855

Query: 301 LVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +V +  + G +E++K+    MP  P++ +W +L                           
Sbjct: 856 MVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGAL--------------------------- 888

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
                   L AC     +D G      + E          Y  + ++ A +GR+ E ED+
Sbjct: 889 --------LGACRVHKDMDMGRLAAQRLFELD--PQNPGPYVIMSNIYAAAGRWKEVEDI 938

Query: 420 ISKMPMK 426
              M MK
Sbjct: 939 RQMMKMK 945



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 181/354 (51%), Gaps = 4/354 (1%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           ++ G+ + G ++ A    DE+      +W A+I+GYV+     EA  ++  M        
Sbjct: 216 LVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKI-GVCP 274

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + FT +S L    A++    GK++H  ++  GF  D  V +AL DMY KC       ++F
Sbjct: 275 DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF 334

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D+M +R+ V+W ++I    Q G   +   LF  + +SG + N F    +L A A  A   
Sbjct: 335 DEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIG 394

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+++HG++ R   +      SALV MYSKCG VE + +VF  +   + VS+ +L+AGY 
Sbjct: 395 KGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYV 454

Query: 338 QNGMPDKALE-YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           Q G  ++ALE Y ++  + G QPD   F  +LT C +    ++G Q  H+   +  +T  
Sbjct: 455 QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQ-IHAHLIRANITKN 513

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
                 +V + +  GR + A+++ ++M  + + + W S++ G + +G    A R
Sbjct: 514 IIVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEGYQQNGETQEALR 566


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 148/388 (38%), Positives = 246/388 (63%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +RD+     ++  +TK G + +A+  F+EMP+ D   W+ MIS Y + ++  EAL+L+  
Sbjct: 237 DRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCR 296

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+     V N FT +SVL A +++  L LG +IH  +++ G DS+  V +AL D+Y KCG
Sbjct: 297 MRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCG 356

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I  + ++F    +++ V+W  +I  Y Q G  E+   LFS ++   I+P   T++ VL 
Sbjct: 357 EIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLR 416

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A A   A E G+Q+H    +  Y+  S  A++L+ MY+KCG +++++  F+ M + D VS
Sbjct: 417 ASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVS 476

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W +LI GY+ +G+  +AL  F+++ +S ++P+ + FVGVL+AC++AGL+DKG  +F S+ 
Sbjct: 477 WNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSML 536

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + +G+    +HY C+V LL RSG+F EA  +I ++P +P   +W +LLG C IH NLDL 
Sbjct: 537 QDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLG 596

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           K  A+ + E+EP++ AT+V ++N+YA+A
Sbjct: 597 KVCAQRVLEMEPQDDATHVLLSNMYATA 624



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/419 (30%), Positives = 211/419 (50%), Gaps = 39/419 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++++L++        +    VH+++   G +   F+   L+D Y+ CGN+  A+ +FD +
Sbjct: 106 VFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGI 165

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
             +D+ S+  M++ + +    E +  LF +M           I GY    +P        
Sbjct: 166 YFKDMVSWTGMVACYAENYCHEDSLLLFCQMR----------IMGY----RP-------- 203

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
                     N FT+S+ L + + ++  ++GK +HG  ++  +D D  V  AL ++Y K 
Sbjct: 204 ----------NNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKS 253

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGV 266
           G I EA+Q F++M   D++ W+ MI RY Q  + +E   LF  + +S  + PN FTFA V
Sbjct: 254 GEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASV 313

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L ACA      LG Q+H  + ++G D   F ++AL+ +Y+KCG +ENS K+F G    + 
Sbjct: 314 LQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNE 373

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V+W ++I GY Q G  +KAL  F  +L    QP  + +  VL A      ++ G Q  HS
Sbjct: 374 VAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQ-IHS 432

Query: 387 IKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +  K    Y  D      ++D+ A+ GR  +A     KM  K D+  W +L+ G  IHG
Sbjct: 433 LTIK--TMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG 488



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 193/411 (46%), Gaps = 35/411 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++++Q   +NR    GK +H H+   G    +F  N LL+ Y                 
Sbjct: 6   YANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTY----------------- 48

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                            G LE A  LFDEMP  +  S+  +  G+ R +Q  +      +
Sbjct: 49  --------------VHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQ-FQRARRLLL 93

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
               E    N+F  +++L  + ++        +H Y+ + G  +D  V +AL D Y  CG
Sbjct: 94  RLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCG 153

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +++ ARQ+FD +  +D+VSWT M+  Y +    E+   LF ++   G RPN FT +  L 
Sbjct: 154 NVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALK 213

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +C    A ++GK VHG   ++ YD   +   AL+ +Y+K G +  +++ F  MP+ DL+ 
Sbjct: 214 SCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIP 273

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           W+ +I+ YAQ+    +ALE F  + +S    P++  F  VL AC    L++ G Q  HS 
Sbjct: 274 WSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSC 332

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             K GL         ++D+ A+ G    +  + +    K ++  W +++ G
Sbjct: 333 VLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEK-NEVAWNTIIVG 382



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 165/331 (49%), Gaps = 39/331 (11%)

Query: 12  KEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           KEAL++  ++       P+   ++S++Q C     L  G ++HS +   G    VF+SN 
Sbjct: 288 KEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNA 347

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+YAKCG I ++  LF    E++  ++NT+I G+ + G  E+A NLF  M   D    
Sbjct: 348 LMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLD---- 403

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                      QP E                   T SSVL A +++  L  G++IH   +
Sbjct: 404 ----------IQPTEV------------------TYSSVLRASASLVALEPGRQIHSLTI 435

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +T ++ D VV ++L DMY KCG I++AR  FDKM  +D VSW A+I  Y   G   E   
Sbjct: 436 KTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALN 495

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGK-QVHGYMTRIGYDPYSFAASALVHMY 305
           LF  + +S  +PN  TF GVL+AC++    + G+      +   G +P     + +V + 
Sbjct: 496 LFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLL 555

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            + G  + + K+   +P +P ++ W +L+  
Sbjct: 556 GRSGQFDEAVKLIGEIPFQPSVMVWRALLGA 586



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 2/179 (1%)

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           ++ ++A +L     +     GK +H ++ + G     FA + L++ Y   G +E++ K+F
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + MP  + VS+ +L  G++++    +A      L + G + +  VF  +L       L D
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             L   H+   K G    A     ++D  +  G    A  V   +  K D   W  ++ 
Sbjct: 122 TCLS-VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFK-DMVSWTGMVA 178


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 265/486 (54%), Gaps = 56/486 (11%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++  +++ C   R LE G+++H          GV I         +C ++  A  +F   
Sbjct: 162 VFPVVLKLCGGLRVLELGRQLH----------GVVIK--------RCADMGSALKIFSGF 203

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDL 145
             ++V SYNTMI G+ + G++E+A+ LFD+M    +D  SW +MISGY       EAL +
Sbjct: 204 SVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSM 263

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           +R +   E   ++ FTL SVL+A + +  LR GKE+H   +  G   +  V  AL +MY 
Sbjct: 264 FRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYS 323

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRY------------------------------ 235
           KC  +  A+  FD + +RD  +W  +I  Y                              
Sbjct: 324 KCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNG 383

Query: 236 -----FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
                 + G  E    LF+E+  S +RP+ +T   +L ACA  A    GKQVH +  R G
Sbjct: 384 IISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQG 443

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           Y+      +ALV MY+KCG+++++ +V+N +  P+LVS  +++  YA +G  D+ +  F 
Sbjct: 444 YELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFR 503

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +L +G +PDH+ F+ VL++C HAG V+ G ++F  +   + +T +  HY CIVDLL+R+
Sbjct: 504 NMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFF-DLMTYYNVTPSLKHYTCIVDLLSRA 562

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           GR  EA +++ K+P KPD  +W +LLGGC I GN++L + AAE+L E+EP N   YV +A
Sbjct: 563 GRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLA 622

Query: 471 NIYASA 476
           N+YA A
Sbjct: 623 NLYAYA 628



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 218/473 (46%), Gaps = 92/473 (19%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S Y+SL++ CR    L  GK+VH+H   +GF    F+   LL MY + G + DA  +F +
Sbjct: 63  STYASLLESCR---TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVK 119

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M +R++ S+  ++S     G  E+A +LF+++ Q D+                   L+  
Sbjct: 120 MPQRNLYSWTAILSVHVDHGYFEEALSLFEKL-QLDDI-----------------GLEF- 160

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR------------TGFDSDE 194
                        F    VL     ++ L LG+++HG +++            +GF    
Sbjct: 161 -------------FVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKN 207

Query: 195 VV-WSALSDMYGKCGSINEARQIFDKM--VDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           VV ++ +   Y + G++ +A+++FD+M  V +D +SW +MI  Y      +E  ++F +L
Sbjct: 208 VVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDL 267

Query: 252 I-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + + GI  ++FT   VL ACAD A+   GK+VH      G    +F   ALV MYSKC +
Sbjct: 268 LMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCED 327

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYA--------------------------------- 337
           ++ ++  F+G+   D  +W  LI+GYA                                 
Sbjct: 328 LKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISG 387

Query: 338 --QNGMPDKALEYFELLLKSGTQPDHIVFVG-VLTACTHAGLVDKGLQ-YFHSIKEKHGL 393
             +NG  + AL  F  +  S  +PD I  VG +L AC     + +G Q + HSI++ + L
Sbjct: 388 HVENGHNELALRLFTEMQTSSLRPD-IYTVGIILPACARLATIARGKQVHAHSIRQGYEL 446

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
                  A +VD+ A+ G    A  V +++   P+     ++L    +HG+ D
Sbjct: 447 DVHIG--AALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNAMLTAYAMHGHGD 496



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 157/344 (45%), Gaps = 63/344 (18%)

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
           S+  S + + + L LGK++H + ++TGF   E V + L  MYG+ G +++A  +F KM  
Sbjct: 63  STYASLLESCRTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQ 122

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R++ SWTA++  +   G  EE  +LF +L    I    F F  VL  C      ELG+Q+
Sbjct: 123 RNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQL 182

Query: 283 HGYMTRIGYDPYS-------------FAASALVHMYSKCGNVENSKKVFNGMPR--PDLV 327
           HG + +   D  S              + + ++  Y + GNVE +K++F+ M     D +
Sbjct: 183 HGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTI 242

Query: 328 SWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTAC-----------THAG 375
           SW S+I+GYA N + D+AL  F +LL++ G + D      VL AC            HA 
Sbjct: 243 SWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQ 302

Query: 376 LVDKGLQY------------------------FHSIKEKHGLTYTA--DHYACIVDLLAR 409
            V +GL +                        F  + E+   T+      YAC       
Sbjct: 303 AVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYAC------- 355

Query: 410 SGRFHEAEDVISKMP---MKPDKFLWASLLGGCRIHGNLDLAKR 450
             +    +++I KM     +P+ + W  ++ G   +G+ +LA R
Sbjct: 356 CNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALR 399



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 110/294 (37%), Gaps = 53/294 (18%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK A      ++    + ++ LI        LE  + +   +K  GF+P V+  N ++  
Sbjct: 328 LKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISG 387

Query: 71  YAKCGNISDAQTLFDEMQ---------------------------------------ERD 91
           + + G+   A  LF EMQ                                       E D
Sbjct: 388 HVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELD 447

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V     ++  + K GS++ A  +++ +   +  S  AM++ Y  +    E + L+R    
Sbjct: 448 VHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFR---- 503

Query: 152 FENSVSNKF-----TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             N + N F     T  SVLS+      +  G E    +           ++ + D+  +
Sbjct: 504 --NMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSR 561

Query: 207 CGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
            G ++EA ++  K+  + D V W A++G     G  E G      LI+  + PN
Sbjct: 562 AGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIE--LEPN 613



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      +K A+Q+ ++IS+P+    ++++     +   +EG  +  ++  +GF+P  
Sbjct: 455 VDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDH 514

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCS----YNTMISGFTKGGSLEQARNLFDE 117
                +L      G +      FD M   +V      Y  ++   ++ G L++A  L  +
Sbjct: 515 VTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKK 574

Query: 118 MPQR-DNFSWTAMISGYV 134
           +P++ D+  W A++ G V
Sbjct: 575 IPRKPDSVMWGALLGGCV 592


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 172/469 (36%), Positives = 261/469 (55%), Gaps = 8/469 (1%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF-----ISNCL- 67
           A  +  Q  HP+  +Y++LI+    N A  +   V++ ++  GF P  F     +  C  
Sbjct: 54  ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTR 113

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L  Y   G +S    +     + DV     ++  ++K G L  AR +FDE+P+++  SWT
Sbjct: 114 LPHYFHVG-LSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWT 172

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           A+I GY+      EAL L+R +        + FTL  +L A S +  L  G+ I GY+  
Sbjct: 173 AIICGYIESGCFGEALGLFRGLLEM-GLRPDSFTLVRILYACSRVGDLASGRWIDGYMRE 231

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +G   +  V ++L DMY KCGS+ EAR++FD MV++DVV W+A+I  Y   G  +E   +
Sbjct: 232 SGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDV 291

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F E+ +  +RP+ +   GV +AC+   A ELG    G M    +       +AL+  Y+K
Sbjct: 292 FFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAK 351

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+V  +K+VF GM R D V + ++I+G A  G    A   F  ++K G QPD   FVG+
Sbjct: 352 CGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGL 411

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L  CTHAGLVD G +YF  +     +T T +HY C+VDL AR+G   EA+D+I  MPM+ 
Sbjct: 412 LCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEA 471

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +  +W +LLGGCR+H +  LA+   + L E+EP N   YV ++NIY+++
Sbjct: 472 NSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSAS 520



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 199/410 (48%), Gaps = 35/410 (8%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           ++L + K+ H  L   G     ++ N LL           A  +F +    ++  YNT+I
Sbjct: 14  KSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLI 73

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
            G     +   A +++  M Q           G+   N                      
Sbjct: 74  RGMVSNDAFRDAVSVYASMRQH----------GFAPDN---------------------- 101

Query: 160 FTLSSVLSAVSAI-QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           FT   VL A + +     +G  +H  +++TGFD D  V + L  +Y K G + +AR++FD
Sbjct: 102 FTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFD 161

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           ++ +++VVSWTA+I  Y + G   E   LF  L++ G+RP++FT   +L AC+       
Sbjct: 162 EIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLAS 221

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G+ + GYM   G     F A++LV MY+KCG++E +++VF+GM   D+V W++LI GYA 
Sbjct: 222 GRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYAS 281

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           NGMP +AL+ F  + +   +PD    VGV +AC+  G ++ G  +   + +         
Sbjct: 282 NGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELG-NWARGLMDGDEFLSNPV 340

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
               ++D  A+ G   +A++V   M  K D  ++ +++ G  + G++  A
Sbjct: 341 LGTALIDFYAKCGSVAQAKEVFKGMRRK-DCVVFNAVISGLAMCGHVGAA 389


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 168/508 (33%), Positives = 279/508 (54%), Gaps = 55/508 (10%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS---- 78
           +P  +++ S+++ C   + L  G+ VH  +   G    ++  N L++MY+K  ++     
Sbjct: 7   YPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEGGV 66

Query: 79  ----DAQTLFDEMQERDV----------CSYNTMISGFTKGGSLEQARNL---------- 114
               D++ L    + R++          C  +  ++G  + G L Q  N+          
Sbjct: 67  QRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQVNTYKKV 126

Query: 115 FDE--------------------------MPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           FDE                          MP+RD  SW  +ISG  +     +AL + R 
Sbjct: 127 FDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVRE 186

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M N  +   + FTLSSVL   +    L  GKEIHGY +R G+D+D  + S+L DMY KC 
Sbjct: 187 MGN-ADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCT 245

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            ++++ ++F  +   D +SW ++I    Q G  +EG   F +++ + I+PN  +F+ ++ 
Sbjct: 246 RVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMP 305

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA      LGKQ+HGY+ R  +D   F ASALV MY+KCGN+  ++ +F+ M   D+VS
Sbjct: 306 ACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVS 365

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT++I GYA +G    A+  F+ +   G +P+++ F+ VLTAC+HAGLVD+  +YF+S+ 
Sbjct: 366 WTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMT 425

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + + +    +HYA + DLL R GR  EA + IS M ++P   +W++LL  CR+H N++LA
Sbjct: 426 QDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELA 485

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           ++ ++ LF ++P+N   YV ++NIY++A
Sbjct: 486 EKVSKKLFTVDPQNIGAYVLLSNIYSAA 513



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 46/334 (13%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL ++ ++ +    P     SS++    +   L +GK++H +   +G+   VFI + L
Sbjct: 178 EDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSL 237

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKC  + D+  +F  + + D  S+N++I+G  + G  ++    F +M         
Sbjct: 238 IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQM--------- 288

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                 +   +P                  N  + SS++ A + +  L LGK++HGYI+R
Sbjct: 289 -----LIAKIKP------------------NHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           + FD +  + SAL DMY KCG+I  AR IFDKM   D+VSWTAMI  Y   G   +  +L
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 385

Query: 248 FSELIKSGIRPNAFTFAGVLNACA-----DHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           F  +   G++PN   F  VL AC+     D A +        Y    G + Y+  A  L 
Sbjct: 386 FKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL- 444

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
               + G +E + +  + M   P    W++L+A 
Sbjct: 445 ---GRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 475



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 144/371 (38%), Gaps = 90/371 (24%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK   Q+L     P+   +SS++  C     L  GK++H ++  S F   VFI++ L+DM
Sbjct: 282 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 341

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           YAKCGNI  A+ +FD+M+  D+ S+  MI G+   G    A +LF  M            
Sbjct: 342 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM------------ 389

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR-----LGKEIHGYI 185
                                 E    N     +VL+A S    +             Y 
Sbjct: 390 --------------------EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYR 429

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +  G +     ++A++D+ G+ G + EA +    M                         
Sbjct: 430 IIPGLEH----YAAVADLLGRVGRLEEAYEFISDM------------------------- 460

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV-HM 304
                     I P    ++ +L AC  H   EL ++V   +  +  DP +  A  L+ ++
Sbjct: 461 ---------HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTV--DPQNIGAYVLLSNI 509

Query: 305 YSKCGNVENSKKVF-----NGMPRPDLVSWTSL-------IAGYAQNGMPDKALEYFELL 352
           YS  G  ++++K+       GM +    SW  +       +AG   +   D+  E  ++L
Sbjct: 510 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 569

Query: 353 LKSGTQPDHIV 363
           L+   +  +++
Sbjct: 570 LEQMEREGYVL 580



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 18/108 (16%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           ++ SG  P+   F  VL +C        G+ VHG + R+G     +  +AL++MYSK  +
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 311 VEN-------SKKVFNGMPRPDLVSWTS-----------LIAGYAQNG 340
           +E          K+  G+P P  +   S            +AG  QNG
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNG 108


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/407 (39%), Positives = 244/407 (59%), Gaps = 3/407 (0%)

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY+KCG + DA  LFD M  +D  S+N +ISGF +    +  R +FDEM +R+  +WTA+
Sbjct: 1   MYSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAV 60

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           ISG  +     + L L+  M+    SVS N  T  S L A S +Q L  G++IHG + + 
Sbjct: 61  ISGLAQNEFYEDGLRLFDQMR--RGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKL 118

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G  SD  + SAL D+Y KCGS+ EA +IF+   + D VS T ++  + Q G  EE   +F
Sbjct: 119 GMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIF 178

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             ++K GI  +    + +L       +  LGKQ+H  + +  +    F ++ L++MYSKC
Sbjct: 179 MRMVKLGIEVDPNMVSAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKC 238

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G++ +S +VF+ M + + VSW S+IA YA+ G   +AL++++ +   G     + F+ +L
Sbjct: 239 GDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTFLSLL 298

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC+HAGLV+KG+++  S+   HGL+  ++HYAC+VD+L R+G   EA+  I  +P  P 
Sbjct: 299 HACSHAGLVEKGMEFLESMTRDHGLSPRSEHYACVVDMLGRAGLLKEAKKFIEGLPENPG 358

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             +W +LLG C IHG+ ++ K AA  LF   P++PA YV MANIY+S
Sbjct: 359 VLVWQALLGACSIHGDSEMGKYAANQLFLATPDSPAPYVLMANIYSS 405



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 148/319 (46%), Gaps = 34/319 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y S +  C   +AL EG+K+H  L   G +  + I + L+D+Y+KCG++ +A  +
Sbjct: 87  PNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEI 146

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+  +E D  S   ++  F + G  E+A  +F  M               V+    ++  
Sbjct: 147 FESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRM---------------VKLGIEVDP- 190

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                     N V      S++L        L LGK+IH  I++  F  +  V + L +M
Sbjct: 191 ----------NMV------SAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINM 234

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + ++ Q+F +M  ++ VSW ++I  Y + G        + ++   GI     TF
Sbjct: 235 YSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTF 294

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L+AC+     E G +    MTR  G  P S   + +V M  + G ++ +KK   G+P
Sbjct: 295 LSLLHACSHAGLVEKGMEFLESMTRDHGLSPRSEHYACVVDMLGRAGLLKEAKKFIEGLP 354

Query: 323 R-PDLVSWTSLIAGYAQNG 340
             P ++ W +L+   + +G
Sbjct: 355 ENPGVLVWQALLGACSIHG 373



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 38/239 (15%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EA+QI  ++        P++ S+++       +L  GK++HS +    F   +F+SN L
Sbjct: 172 EEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGL 231

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           ++MY+KCG++ D+  +F EM +++  S+N++I                            
Sbjct: 232 INMYSKCGDLYDSLQVFHEMTQKNSVSWNSVI---------------------------- 263

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
              + Y RY     AL  Y  M+  E       T  S+L A S    +  G E    + R
Sbjct: 264 ---AAYARYGDGFRALQFYDDMR-VEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTR 319

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD-VVSWTAMIGRYFQEGRREEG 244
             G       ++ + DM G+ G + EA++  + + +   V+ W A++G     G  E G
Sbjct: 320 DHGLSPRSEHYACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSEMG 378


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/480 (34%), Positives = 276/480 (57%), Gaps = 6/480 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D  C    L  A Q+   + +     ++SL+         EE  ++   L +SG KP  
Sbjct: 182 VDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSD 241

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERD----VCSYNTMISGFTKGGSLEQARNLFDE 117
           F    LL       +    Q +   + + +    V   N ++  ++K   +++   LF E
Sbjct: 242 FTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYE 301

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+ D  S+  +I+ Y    Q  E+ DL+R +Q F      +F  +++LS  ++   LR+
Sbjct: 302 MPELDGISYNVVITSYAWNGQFKESFDLFRKLQ-FTRFDRRQFPFATLLSIATSSLNLRM 360

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++IH   +  G + +  V +AL DMY KC    EA++IFD +  +  V WTAMI  Y Q
Sbjct: 361 GRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQ 420

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G+ EEG  +FS++ ++G+  +  TFA +L ACA+ A+  LG+Q+H  + R G+    ++
Sbjct: 421 KGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYS 480

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            SAL+  Y+KCG + ++ K F  MP  + VSW +LI+ YAQNG  D  L  F+ +++SG 
Sbjct: 481 GSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGY 540

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD + F+ VL+AC+H G V++ L +F+S+ + + +T   +HY  +VD+L R+GRF EAE
Sbjct: 541 KPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAE 600

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
            ++++MP +P + +W+S+L  CRIH N +LAK+AA+ LF +E   + A Y+ M+NIYA A
Sbjct: 601 KLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVA 660



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 201/398 (50%), Gaps = 3/398 (0%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           +L     + +H+  +GF P    SN  ++ + + G++  A  +FD+M  ++  S N MIS
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G  K G L +AR LFD M +R   SWT +I GY++ NQ  EA  LY  M+       +  
Sbjct: 83  GHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR-GGIEPDYV 141

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TL ++LS    ++   +  +IH ++++ G++ + +V ++L D Y K   +  A Q+F  M
Sbjct: 142 TLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHM 201

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
           +++D V++ +++  Y  EG  EE   LF EL  SGI+P+ FTFA +L+A       + G+
Sbjct: 202 LNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQ 261

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           QVHG++ +  +    F  +AL+  YSK   V+   K+F  MP  D +S+  +I  YA NG
Sbjct: 262 QVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNG 321

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              ++ + F  L  +        F  +L+  T +  +  G Q  H      G  + +   
Sbjct: 322 QFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQ-IHCQAITVGANFESRVE 380

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             +VD+ A+     EA+ +   +  K     W +++  
Sbjct: 381 NALVDMYAKCNGDKEAQKIFDNIACK-STVPWTAMISA 417


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/452 (36%), Positives = 241/452 (53%), Gaps = 41/452 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  +++ C +  AL+EG++VH  +  SGF+   F++  L+DMYA  G I  A  +
Sbjct: 49  PNCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRV 108

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F EM ER+V ++  MI+G+     L  AR LFD  P+RD   W  MISGY+     I A 
Sbjct: 109 FGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRAR 168

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M N                                         D + W+ + + 
Sbjct: 169 ELFDKMPN----------------------------------------KDVMSWNTVLNG 188

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           Y   G +    ++F++M +R+V SW A+IG Y + G   E  + F  ++  G + PN  T
Sbjct: 189 YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDAT 248

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL+ACA   A +LGK VH Y    GY    +  +AL+ MY+KCG VE +  VF  M 
Sbjct: 249 LVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMD 308

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL+SW ++I G A +G    AL  F  +  +G  PD I F+G+L ACTH GLV+ G  
Sbjct: 309 NKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFS 368

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+ + + +    +HY CIVDLL R+G    A D I KMP++ D  +WA+LLG CR++
Sbjct: 369 YFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVY 428

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            N++LA+ A E L E EP+NPA YV ++NIY 
Sbjct: 429 KNVELAELALEKLIEFEPKNPANYVMLSNIYG 460


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 248/454 (54%), Gaps = 33/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++ I  C +   L  G ++H  L +SGF    FIS+ L+DMY KCG+       
Sbjct: 205 PNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGH------- 257

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   LE A  +F++MP++   +W +MISGY      I  +
Sbjct: 258 ------------------------LEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCI 293

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L++ M N E       TLSS++   S    L  GK +HGY +R    SD  + S+L D+
Sbjct: 294 QLFKRMYN-EGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDL 352

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A  IF  +    VVSW  MI  Y  EG+  E   LFSE+ KS + P+A TF
Sbjct: 353 YFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITF 412

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL AC+  AA E G+++H  +     D       AL+ MY+KCG V+ +  VF  +P+
Sbjct: 413 TSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLVSWTS+I  Y  +G    ALE F  +L+S  +PD + F+ +L+AC HAGLVD+G  Y
Sbjct: 473 RDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYY 532

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-MKPDKFLWASLLGGCRIH 442
           F+ +   +G+    +HY+C++DLL R+GR HEA +++ + P ++ D  L ++L   CR+H
Sbjct: 533 FNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLH 592

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N+DL    A  L + +P++ +TY+ ++N+YASA
Sbjct: 593 RNIDLGAEIARTLIDKDPDDSSTYILLSNMYASA 626



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 212/436 (48%), Gaps = 39/436 (8%)

Query: 13  EALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           EAL++  ++ H     P    Y S+++ C        GK +H+ L  +G    + + + L
Sbjct: 88  EALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSL 147

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYAKC     A  LF+EM E+DV  +NT+IS + + G+ +                  
Sbjct: 148 VGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFK------------------ 189

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                        EAL+ + +M+ F     N  T+++ +S+ + +  L  G EIH  ++ 
Sbjct: 190 -------------EALEYFGLMRRFGFE-PNSVTITTAISSCARLLDLNRGMEIHEELIN 235

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +GF  D  + SAL DMYGKCG +  A ++F++M  + VV+W +MI  Y  +G       L
Sbjct: 236 SGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQL 295

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  +   G++P   T + ++  C+  A    GK VHGY  R       F  S+L+ +Y K
Sbjct: 296 FKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFK 355

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG VE ++ +F  +P+  +VSW  +I+GY   G   +AL  F  + KS  +PD I F  V
Sbjct: 356 CGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSV 415

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTAC+    ++KG +  + I EK  L         ++D+ A+ G   EA  V   +P K 
Sbjct: 416 LTACSQLAALEKGEEIHNLIIEKK-LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KR 473

Query: 428 DKFLWASLLGGCRIHG 443
           D   W S++     HG
Sbjct: 474 DLVSWTSMITAYGSHG 489



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 199/414 (48%), Gaps = 32/414 (7%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L++ C  +++L++GK +H  + + G +  +F+   L+++Y  C     A+ +FD M+  +
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME--N 66

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
            C  +                             W  +++GY +    +EAL+L+  + +
Sbjct: 67  PCEISL----------------------------WNGLMAGYTKNYMYVEALELFEKLLH 98

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
           +     + +T  SVL A   +    LGK IH  +++TG   D VV S+L  MY KC +  
Sbjct: 99  YPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFE 158

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A  +F++M ++DV  W  +I  Y+Q G  +E    F  + + G  PN+ T    +++CA
Sbjct: 159 KAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCA 218

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                  G ++H  +   G+   SF +SALV MY KCG++E + +VF  MP+  +V+W S
Sbjct: 219 RLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNS 278

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I+GY   G     ++ F+ +   G +P       ++  C+ +  + +G ++ H    ++
Sbjct: 279 MISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRN 337

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +       + ++DL  + G+   AE++   +P K     W  ++ G    G L
Sbjct: 338 RIQSDVFINSSLMDLYFKCGKVELAENIFKLIP-KSKVVSWNVMISGYVAEGKL 390


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 182/481 (37%), Positives = 263/481 (54%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC Q  L +ALQ+L Q  +P+   Y  LI  C +  +L +G  +H HL   G     
Sbjct: 54  IQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDP 113

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++  L++MY++                                 S++ AR +FD+  +R
Sbjct: 114 FLATKLINMYSELD-------------------------------SIDNARKVFDKTRKR 142

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA----IQCLRL 177
             + W A+           E LDLYR M N     S++FT + VL A  A    +  L  
Sbjct: 143 TIYVWNALFRALTLAGYGREVLDLYRRM-NRIGVPSDRFTYTYVLKACVASEAFVSLLLN 201

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+EIHG+I+R GF+    + + L DMY + G +  A ++FD+M  ++VVSW+AMI  Y +
Sbjct: 202 GREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSK 261

Query: 238 EGRREEGFALFSELI--KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            G+  E   LF +++     + PN+ T   VL ACA  AA E GK +HGY+ R G D   
Sbjct: 262 NGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSIL 321

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              SALV +Y++CGN+E   +VF  M + D+VSW SLI+ Y  +G   KA++ F+ ++  
Sbjct: 322 PVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQ 381

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P  I FV VL AC+HAGLV++G   F S+   H +  + +HYAC+VDLL R+ R  E
Sbjct: 382 GLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDE 441

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  +I  M ++P   +W SLLG CRIH N++LA+RA   LFE+EP N   YV +A+IYA 
Sbjct: 442 AAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAE 501

Query: 476 A 476
           A
Sbjct: 502 A 502


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/509 (32%), Positives = 270/509 (53%), Gaps = 63/509 (12%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  LIQ C   R+  E K+VH+H+   GF   V++ N L++ ++ C N++DA  +F+E  
Sbjct: 81  YPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESS 140

Query: 89  ERDVCSYNTMISGFTKGGSLEQARN-------------------------------LFDE 117
             D  S+N++++G+ + G++E+A++                               LFDE
Sbjct: 141 VLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDE 200

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M ++D  +W+A+I+ + +     EA+  +  M      V     +S+ LSA + +  + +
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSA-LSACANLLVVNM 259

Query: 178 GKEIHGYIMRTGFDS-------------------------------DEVVWSALSDMYGK 206
           GK IH   ++ G +S                               D + W+++   Y K
Sbjct: 260 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 319

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           C  ++ A+ IFD M ++DVVSW++MI  Y Q    +E  ALF E+  SG +P+  T   V
Sbjct: 320 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 379

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++ACA  AA E GK VH Y+ R G        + L+ MY KCG VE + +VF GM    +
Sbjct: 380 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 439

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            +W +LI G A NG+ + +L+ F  + K    P+ I F+GVL AC H GLVD+G  +F+S
Sbjct: 440 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYS 499

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +   H +     HY C+VDLL R+G+  EAE+++++MPM PD   W +LLG C+ HG+ +
Sbjct: 500 MIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSE 559

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYAS 475
           + +R    L E++P++   +V ++NIYAS
Sbjct: 560 MGRRVGRKLIELQPDHDGFHVLLSNIYAS 588



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 191/430 (44%), Gaps = 98/430 (22%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR-MMQNFENSVSNKFTLSSVL 166
           ++  R +F+ +   + F W  MI  Y++ N P  A  LY+ M+ N+  +  + +T   ++
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGA--DNYTYPLLI 85

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDS-------------------------------DEV 195
            A S  +     K++H ++++ GFDS                               D V
Sbjct: 86  QACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSV 145

Query: 196 VWSALSDMYGKCGSINEARQI-------------------------------FDKMVDRD 224
            W+++   Y + G++ EA+ I                               FD+M+++D
Sbjct: 146 SWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKD 205

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           +V+W+A+I  + Q    EE    F  + K G+  +       L+ACA+     +GK +H 
Sbjct: 206 MVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHS 265

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGN-------------------------------VEN 313
              +IG + Y    +AL++MYSKCG+                               V+N
Sbjct: 266 LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDN 325

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           +K +F+ MP  D+VSW+S+I+GYAQN + D+ L  F+ +  SG +PD    V V++AC  
Sbjct: 326 AKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACAR 385

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
              +++G ++ H+  +++GLT        ++D+  + G    A +V   M  K     W 
Sbjct: 386 LAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS-TWN 443

Query: 434 SLLGGCRIHG 443
           +L+ G  ++G
Sbjct: 444 ALILGLAMNG 453



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 39/269 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +   S+I  C +  ALE+GK VH+++K +G    V +   L+DMY KCG +  A  +
Sbjct: 371 PDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEV 430

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M E+ + ++N +I G    G +E + ++F  M +                       
Sbjct: 431 FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKC---------------------- 468

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALS 201
                     +   N+ T   VL A   +  +  G+  H Y M         V  +  + 
Sbjct: 469 ----------HVTPNEITFMGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMV 517

Query: 202 DMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
           D+ G+ G + EA ++ ++M +  DV +W A++G   + G  E G  +  +LI+  ++P+ 
Sbjct: 518 DLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE--LQPDH 575

Query: 261 FTFAGVL-NACADHAAEELGKQVHGYMTR 288
             F  +L N  A     +   ++ G MT+
Sbjct: 576 DGFHVLLSNIYASKGKWDDVLEIRGMMTK 604


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 265/443 (59%), Gaps = 35/443 (7%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111
           L  SGF  G F+ N L+DMYAKCG + DA  +F+ M+ +DV ++N M++G+++ G  E A
Sbjct: 66  LPVSGF-LGFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDA 124

Query: 112 RNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
            +LF +M +     D  +W+++ISGY +     EA+D++R M        N  TL S+LS
Sbjct: 125 LSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCR-PNVVTLMSLLS 183

Query: 168 AVSAIQCLRLGKEIHGYIMRTGF------DSDEV-VWSALSDMYGKCGSINEARQIFDKM 220
           A +++  L  GKE H Y ++         D+D++ V +AL DMY KC S+  AR +FD++
Sbjct: 184 ACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 243

Query: 221 V--DRDVVSWTAMIGRYFQEGRREEGFALFSELIK--SGIRPNAFTFAGVLNACADHAAE 276
              DRDVV+WT MIG Y Q G       LFSE+ K  + I PN FT + VL ACA  AA 
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 303

Query: 277 ELGKQVHGYM---TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           + GKQ+H Y+   +RI  D   F A+ L+ MYSK G+V+ ++ VF+ M + + VSWTSL+
Sbjct: 304 KFGKQIHAYVLRRSRIDSDVL-FVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLL 362

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            GY  +G          L+L      D I F+ VL AC+H+G+VD+G+  F+ + +   +
Sbjct: 363 TGYGMHGAA--------LVL------DGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVV 408

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
               +HYAC+ DL  R+GR  EA  +I+ M M+P   +W +LL  CR H N +LA+ AA+
Sbjct: 409 DPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAK 468

Query: 454 ALFEIEPENPATYVTMANIYASA 476
            L E++ +N  TY  ++NIYA+A
Sbjct: 469 KLLELKADNDGTYTLLSNIYANA 491



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 68/368 (18%)

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + SW +++S Y     P +A+ L+R M      + +   + ++L              + 
Sbjct: 23  SVSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNIL-------------PVS 69

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           G++   GF     V +AL DMY KCG + +A ++F++M  +DVV+W AM+  Y Q GR E
Sbjct: 70  GFL---GF----FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFE 122

Query: 243 EGFALFSELIKSGI-----------------------------------RPNAFTFAGVL 267
           +  +LF ++ +  I                                   RPN  T   +L
Sbjct: 123 DALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLL 182

Query: 268 NACADHAAEELGKQVHGYMTRI------GYDPYSFAA-SALVHMYSKCGNVENSKKVFNG 320
           +ACA   A   GK+ H Y  +         D    A  +AL+ MY+KC ++E ++ +F+ 
Sbjct: 183 SACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDE 242

Query: 321 M-PRP-DLVSWTSLIAGYAQNGMPDKALEYFELLLK--SGTQPDHIVFVGVLTACTHAGL 376
           + P+  D+V+WT +I GYAQ+G  + AL+ F  + K  +   P+      VL AC     
Sbjct: 243 ICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAA 302

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           +  G Q    +  +  +       A C++D+ ++SG    A+ V   M  K +   W SL
Sbjct: 303 LKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSL 361

Query: 436 LGGCRIHG 443
           L G  +HG
Sbjct: 362 LTGYGMHG 369



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGV-FISNCLLDMYAKCGNISDAQ 81
           P+    S ++  C +  AL+ GK++H++ L+ S     V F++NCL+DMY+K G++  AQ
Sbjct: 285 PNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQ 344

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGS 107
            +FD M +R+  S+ ++++G+   G+
Sbjct: 345 VVFDSMSKRNAVSWTSLLTGYGMHGA 370


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 253/450 (56%), Gaps = 36/450 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS++        L  G +VH+ +  S     VF++N LLD Y+KC  + D         
Sbjct: 239 FSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM-------- 290

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  R LFDEMP+RDN S+  +I+ Y         L L+R 
Sbjct: 291 -----------------------RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFRE 327

Query: 149 MQN--FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           MQ   F+  V      +++LS   ++  + +GK+IH  ++  G  S++++ +AL DMY K
Sbjct: 328 MQKLGFDRQV---LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 384

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG ++ A+  F    ++  +SWTA+I  Y Q G+ EE   LFS++ ++G+RP+  TF+ +
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           + A +  A   LG+Q+H Y+ R GY    F+ S LV MY+KCG ++ + + F+ MP  + 
Sbjct: 445 IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 504

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SW ++I+ YA  G    A++ FE +L  G  PD + F+ VL AC+H GL D+ ++YFH 
Sbjct: 505 ISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL 564

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +K ++ ++   +HYAC++D L R G F + + ++ +MP K D  +W S+L  CRIHGN +
Sbjct: 565 MKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQE 624

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA+ AA+ LF +EP +   YV ++NIYA A
Sbjct: 625 LARVAADKLFGMEPTDATPYVILSNIYARA 654



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 174/369 (47%), Gaps = 33/369 (8%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
           G    VF+ N LLD Y K G ++ A+ +F EM ++D  +YN M+ G +K G   QA  LF
Sbjct: 165 GLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLF 224

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
             M                R   P                 +  FT SS+L+  + +  L
Sbjct: 225 AAMR---------------RAGIP-----------------ATHFTFSSILTVAAGMAHL 252

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
            LG ++H  ++R+    +  V ++L D Y KC  +++ R++FD+M +RD VS+  +I  Y
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                      LF E+ K G       +A +L+         +GKQ+H  +  +G     
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              +AL+ MYSKCG ++ +K  F+       +SWT+LI GY QNG  ++AL+ F  + ++
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 432

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD   F  ++ A +   ++  G Q  HS   + G   +    + +VD+ A+ G   E
Sbjct: 433 GLRPDRATFSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 491

Query: 416 AEDVISKMP 424
           A     +MP
Sbjct: 492 ALRTFDEMP 500



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 201/420 (47%), Gaps = 49/420 (11%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           +GF    +  N  L      G++  A+ +FD+M  +++ S N ++S ++  G L  A++L
Sbjct: 37  TGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHL 96

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F   P R+  +WT M+  +    +  +AL L+R M   E  + ++ T+++VL+       
Sbjct: 97  FLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG-EGVIPDRVTVTTVLNLPGCTV- 154

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
                 +H + ++ G D+   V + L D Y K G +  AR++F +M D+D V++ AM+  
Sbjct: 155 ----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 210

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
             +EG   +   LF+ + ++GI    FTF+ +L   A  A   LG QVH  + R      
Sbjct: 211 CSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLN 270

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN--------------- 339
            F  ++L+  YSKC  +++ +++F+ MP  D VS+  +IA YA N               
Sbjct: 271 VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 330

Query: 340 -GMPDKALEYFELLLKSGTQPD---------HIVFVG----------VLTACTHAGLVDK 379
            G   + L Y  +L  +G+ PD          +V +G          ++   +  G++D 
Sbjct: 331 LGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 390

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP---MKPDKFLWASLL 436
               F +  EK  +++TA     ++    ++G+  EA  + S M    ++PD+  ++S++
Sbjct: 391 AKSNFSNRSEKSAISWTA-----LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 261/454 (57%), Gaps = 17/454 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  ++ SL++     +  +    +H+     G    ++I+N L++ YAK  N   A  +
Sbjct: 108 PNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHN---AGKV 164

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD   +R                 ++  + +FD MP RD  SW  +I+G+ +    +EAL
Sbjct: 165 FDVFPKRG-------------ESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEAL 211

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           D+ R M        + FTLSS+L   +    +  GKEIHGY +R GFD D  + S+L DM
Sbjct: 212 DMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDM 271

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +  + + F  +  +D +SW ++I    Q G  + G   F  ++K  ++P A +F
Sbjct: 272 YAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSF 331

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + V+ ACA   A  LG+Q+HG + R+G+D   F AS+LV MY+KCGN++ ++ VF+ + +
Sbjct: 332 SSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDK 391

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V+WT++I G A +G    A+  FE +L+ G +P ++ F+ VLTAC+HAGLVD+G +Y
Sbjct: 392 RDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRY 451

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-MKPDKFLWASLLGGCRIH 442
           F+S++   G+    +HYA + DLL R+GR  EA D IS M  ++P   +W+ LL  CR H
Sbjct: 452 FNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAH 511

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +++LA++  + L  ++ EN   YV M+NIY++A
Sbjct: 512 KSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAA 545



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 18/236 (7%)

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           +W+++I  Y         F+ F+ +    + PN   F  +L A       +L   +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 287 TRIGYDPYSFAASALVHMYSKCGN---------------VENSKKVFNGMPRPDLVSWTS 331
            R+G D   + A+AL++ Y+K  N               ++  KKVF+ MP  D+VSW +
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +IAG+AQNGM  +AL+    + K+G  +PD      +L        V+KG +  H    +
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKE-IHGYAVR 255

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +G        + ++D+ A+  R   +      +P K D   W S++ GC  +G  D
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRK-DAISWNSIIAGCVQNGEFD 310



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +R LKE ++       P    +SS+I  C    AL  G+++H  +   GF    FI++ L
Sbjct: 317 RRMLKENVK-------PMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSL 369

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCGNI  A+ +FD + +RD+ ++  +I G    G    A +LF+ M +       
Sbjct: 370 VDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLE------D 423

Query: 128 AMISGYVRYNQPIEALDLYRMMQ---NFENSVSNKFTLSSVLSAVSAIQCL--RLGK--E 180
            +   YV +   + A     ++     + NS+   F ++  L   +A+  L  R G+  E
Sbjct: 424 GVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEE 483

Query: 181 IHGYI--MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD---VVSWTAMIGRY 235
            + +I  MR G      VWS L        S+  A ++ DK++  D   + ++  M   Y
Sbjct: 484 AYDFISNMR-GVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIY 542

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM----TRIGY 291
               R ++   L   + K G++           AC   +  E+G QVH +M    +   Y
Sbjct: 543 SAAQRWKDAARLRIHMRKKGLKKTP--------AC---SWIEVGNQVHTFMAGDKSHPYY 591

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFN 319
           D  + A   L+    K G V ++ +V +
Sbjct: 592 DKINKALDVLLEQMEKEGYVIDTNQVLH 619


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 267/472 (56%), Gaps = 38/472 (8%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +KEAL +   +      P  +   S++  C   + LE G++VH+ ++       + + N 
Sbjct: 205 VKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNS 264

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LLDMYAKC                               G++++A+ +F EM +RD  SW
Sbjct: 265 LLDMYAKC-------------------------------GNMDEAQMIFYEMDKRDVVSW 293

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T M++GY+       AL L +MMQ FE+   N  TL+SVLSA +++  L+ G+ +HG+ +
Sbjct: 294 TTMMNGYILNGDARSALLLCQMMQ-FESVKPNFVTLASVLSACASLYSLKHGRCLHGWAI 352

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R   +S+ +V +AL DMY KC ++N + ++F K   +    W A+I      G   +   
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF +++   + PN  T   +L A A     +  + +HGY+ R G+      A+ L+ +YS
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 307 KCGNVENSKKVFNGMPRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           KCG++E++  +FNG+P+ D  +++W+++IAGY  +G  + A+  F+ +++SG +P+ I F
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITF 532

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             +L AC+HAGLVD+GL  F  + E + ++   DHY C++DLL R+GR  EA ++I  M 
Sbjct: 533 TSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA 592

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +P+  +W +LLG C IH N++L + AA+ LFE+EP N   YV +ANIY++ 
Sbjct: 593 FRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAV 644



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 198/429 (46%), Gaps = 40/429 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  +I+ C      E G  +H+    SGF    F+ N L+ MY  CG        
Sbjct: 121 PDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG-------- 172

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   +E AR +FD M +R   SW  MI+GY +     EAL
Sbjct: 173 -----------------------EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEAL 209

Query: 144 DLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
            ++  M  +  E   +   T+ SVL   S ++ L +G+ +H  +       D  VW++L 
Sbjct: 210 MVFDWMIGKGIEPDCA---TVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLL 266

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           DMY KCG+++EA+ IF +M  RDVVSWT M+  Y   G       L   +    ++PN  
Sbjct: 267 DMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFV 326

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T A VL+ACA   + + G+ +HG+  R   +      +AL+ MY+KC NV  S +VF+  
Sbjct: 327 TLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKT 386

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD-KG 380
            +     W ++I+G   NG+  KA+E F+ +L     P+      +L A  +A L D + 
Sbjct: 387 SKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPA--YAFLTDLQQ 444

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK-PDKFLWASLLGGC 439
            +  H    + G     +    ++D+ ++ G    A ++ + +P K  D   W++++ G 
Sbjct: 445 ARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGY 504

Query: 440 RIHGNLDLA 448
            +HG+ + A
Sbjct: 505 GMHGHGETA 513



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 205/452 (45%), Gaps = 41/452 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y SL+Q C   +++   K++H+H  + G     +  + L                     
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLL--------------------- 59

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                  +++ + +   G    AR LFDE+     FSW AMI  Y       +AL L+  
Sbjct: 60  -------SSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQ 112

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M        + +T   V+ A        +G  IH   + +GFDSD  V ++L  MY  CG
Sbjct: 113 MLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG 172

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  AR++FD M +R +VSW  MI  YF+ G  +E   +F  +I  GI P+  T   VL 
Sbjct: 173 EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLP 232

Query: 269 ACADHAAEELGKQVHGY--MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
            C+     E+G++VH    +  +G D   +  ++L+ MY+KCGN++ ++ +F  M + D+
Sbjct: 233 VCSYLKELEVGRRVHALVEVKNLGEDISVW--NSLLDMYAKCGNMDEAQMIFYEMDKRDV 290

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSWT+++ GY  NG    AL   +++     +P+ +    VL+AC     +  G +  H 
Sbjct: 291 VSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHG-RCLHG 349

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              +  L         ++D+ A+    + +  V SK   K     W +++ GC IH    
Sbjct: 350 WAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTS-KQRTAPWNAIISGC-IHNG-- 405

Query: 447 LAKRAAE----ALFEIEPENPATYVTMANIYA 474
           L+++A E     L E    N AT  ++   YA
Sbjct: 406 LSRKAIELFKQMLMEAVDPNDATLNSLLPAYA 437


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/509 (32%), Positives = 270/509 (53%), Gaps = 63/509 (12%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  LIQ C   R+  E K+VH+H+   GF   V++ N L++ ++ C N++DA  +F+E  
Sbjct: 216 YPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESS 275

Query: 89  ERDVCSYNTMISGFTKGGSLEQARN-------------------------------LFDE 117
             D  S+N++++G+ + G++E+A++                               LFDE
Sbjct: 276 VLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDE 335

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M ++D  +W+A+I+ + +     EA+  +  M      V     +S+ LSA + +  + +
Sbjct: 336 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSA-LSACANLLVVNM 394

Query: 178 GKEIHGYIMRTGFDS-------------------------------DEVVWSALSDMYGK 206
           GK IH   ++ G +S                               D + W+++   Y K
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           C  ++ A+ IFD M ++DVVSW++MI  Y Q    +E  ALF E+  SG +P+  T   V
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++ACA  AA E GK VH Y+ R G        + L+ MY KCG VE + +VF GM    +
Sbjct: 515 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 574

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            +W +LI G A NG+ + +L+ F  + K    P+ I F+GVL AC H GLVD+G  +F+S
Sbjct: 575 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYS 634

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +   H +     HY C+VDLL R+G+  EAE+++++MPM PD   W +LLG C+ HG+ +
Sbjct: 635 MIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSE 694

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYAS 475
           + +R    L E++P++   +V ++NIYAS
Sbjct: 695 MGRRVGRKLIELQPDHDGFHVLLSNIYAS 723



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 191/436 (43%), Gaps = 100/436 (22%)

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMIS--GYVRYNQPIEALDLYR-MMQNFENSVSNKF 160
           K  S+ +   L    PQ + +   A  S   Y++ N P  A  LY+ M+ N+  +  + +
Sbjct: 157 KSRSVNKGFLLLMRYPQANTWKMPAKASRRAYIQTNSPHFAFTLYKSMLSNYLGA--DNY 214

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS---------------------------- 192
           T   ++ A S  +     K++H ++++ GFDS                            
Sbjct: 215 TYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNES 274

Query: 193 ---DEVVWSALSDMYGKCGSINEARQI-------------------------------FD 218
              D V W+++   Y + G++ EA+ I                               FD
Sbjct: 275 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFD 334

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +M+++D+V+W+A+I  + Q    EE    F  + K G+  +       L+ACA+     +
Sbjct: 335 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGN---------------------------- 310
           GK +H    +IG + Y    +AL++MYSKCG+                            
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 311 ---VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
              V+N+K +F+ MP  D+VSW+S+I+GYAQN + D+ L  F+ +  SG +PD    V V
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           ++AC     +++G ++ H+  +++GLT        ++D+  + G    A +V   M ++ 
Sbjct: 515 ISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEK 572

Query: 428 DKFLWASLLGGCRIHG 443
               W +L+ G  ++G
Sbjct: 573 GISTWNALILGLAMNG 588



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 39/269 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +   S+I  C +  ALE+GK VH+++K +G    V +   L+DMY KCG +  A  +
Sbjct: 506 PDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEV 565

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M E+ + ++N +I G    G +E + ++F  M +                       
Sbjct: 566 FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKC---------------------- 603

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALS 201
                     +   N+ T   VL A   +  +  G+  H Y M         V  +  + 
Sbjct: 604 ----------HVTPNEITFMGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMV 652

Query: 202 DMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
           D+ G+ G + EA ++ ++M +  DV +W A++G   + G  E G  +  +LI+  ++P+ 
Sbjct: 653 DLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE--LQPDH 710

Query: 261 FTFAGVL-NACADHAAEELGKQVHGYMTR 288
             F  +L N  A     +   ++ G MT+
Sbjct: 711 DGFHVLLSNIYASKGKWDDVLEIRGMMTK 739


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 253/450 (56%), Gaps = 36/450 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS++        L  G +VH+ +  S     VF++N LLD Y+KC  + D         
Sbjct: 239 FSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM-------- 290

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                  R LFDEMP+RDN S+  +I+ Y         L L+R 
Sbjct: 291 -----------------------RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFRE 327

Query: 149 MQN--FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           MQ   F+  V      +++LS   ++  + +GK+IH  ++  G  S++++ +AL DMY K
Sbjct: 328 MQKLGFDRQV---LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 384

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG ++ A+  F    ++  +SWTA+I  Y Q G+ EE   LFS++ ++G+RP+  TF+ +
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           + A +  A   LG+Q+H Y+ R GY    F+ S LV MY+KCG ++ + + F+ MP  + 
Sbjct: 445 IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 504

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SW ++I+ YA  G    A++ FE +L  G  PD + F+ VL AC+H GL D+ ++YFH 
Sbjct: 505 ISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL 564

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +K ++ ++   +HYAC++D L R G F + + ++ +MP K D  +W S+L  CRIHGN +
Sbjct: 565 MKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQE 624

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA+ AA+ LF +EP +   YV ++NIYA A
Sbjct: 625 LARVAADKLFGMEPTDATPYVILSNIYARA 654



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 186/401 (46%), Gaps = 34/401 (8%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
           G    VF+ N LLD Y K G ++ A+ +F EM ++D  +YN M+ G +K G   QA  LF
Sbjct: 165 GLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLF 224

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
             M                R   P                 +  FT SS+L+  + +  L
Sbjct: 225 AAMR---------------RAGIP-----------------ATHFTFSSILTVAAGMAHL 252

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
            LG ++H  ++R+    +  V ++L D Y KC  +++ R++FD+M +RD VS+  +I  Y
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                      LF E+ K G       +A +L+         +GKQ+H  +  +G     
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              +AL+ MYSKCG ++ +K  F+       +SWT+LI GY QNG  ++AL+ F  + ++
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 432

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD   F  ++ A +   ++  G Q  HS   + G   +    + +VD+ A+ G   E
Sbjct: 433 GLRPDRATFSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 491

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           A     +MP + +   W +++     +G    A +  E + 
Sbjct: 492 ALRTFDEMPER-NSISWNAVISAYAHYGEAKNAIKMFEGML 531



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 201/420 (47%), Gaps = 49/420 (11%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           +GF    +  N  L      G++  A+ +FD+M  +++ S N ++S ++  G L  A++L
Sbjct: 37  TGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHL 96

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F   P R+  +WT M+  +    +  +AL L+R M   E  + ++ T+++VL+       
Sbjct: 97  FLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG-EGVIPDRVTVTTVLNLPGCTV- 154

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
                 +H + ++ G D+   V + L D Y K G +  AR++F +M D+D V++ AM+  
Sbjct: 155 ----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 210

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
             +EG   +   LF+ + ++GI    FTF+ +L   A  A   LG QVH  + R      
Sbjct: 211 CSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLN 270

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN--------------- 339
            F  ++L+  YSKC  +++ +++F+ MP  D VS+  +IA YA N               
Sbjct: 271 VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 330

Query: 340 -GMPDKALEYFELLLKSGTQPD---------HIVFVG----------VLTACTHAGLVDK 379
            G   + L Y  +L  +G+ PD          +V +G          ++   +  G++D 
Sbjct: 331 LGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 390

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP---MKPDKFLWASLL 436
               F +  EK  +++TA     ++    ++G+  EA  + S M    ++PD+  ++S++
Sbjct: 391 AKSNFSNRSEKSAISWTA-----LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 267/472 (56%), Gaps = 38/472 (8%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +KEAL +   +      P  +   S++  C   + LE G++VH+ ++       + + N 
Sbjct: 205 VKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNS 264

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LLDMYAKC                               G++++A+ +F EM +RD  SW
Sbjct: 265 LLDMYAKC-------------------------------GNMDEAQMIFYEMDKRDVVSW 293

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T M++GY+       AL L +MMQ FE+   N  TL+SVLSA +++  L+ G+ +HG+ +
Sbjct: 294 TTMMNGYILNGDARSALLLCQMMQ-FESVKPNFVTLASVLSACASLYSLKHGRCLHGWAI 352

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R   +S+ +V +AL DMY KC ++N + ++F K   +    W A+I      G   +   
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF +++   + PN  T   +L A A     +  + +HGY+ R G+      A+ L+ +YS
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 307 KCGNVENSKKVFNGMPRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           KCG++E++  +FNG+P+ D  +++W+++IAGY  +G  + A+  F+ +++SG +P+ I F
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITF 532

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             +L AC+HAGLVD+GL  F  + E + ++   DHY C++DLL R+GR  EA ++I  M 
Sbjct: 533 TSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA 592

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +P+  +W +LLG C IH N++L + AA+ LFE+EP N   YV +ANIY++ 
Sbjct: 593 FRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAV 644



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 198/429 (46%), Gaps = 40/429 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  +I+ C      E G  +H+    SGF    F+ N L+ MY  CG        
Sbjct: 121 PDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG-------- 172

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   +E AR +FD M +R   SW  MI+GY +     EAL
Sbjct: 173 -----------------------EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEAL 209

Query: 144 DLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
            ++  M  +  E   +   T+ SVL   S ++ L +G+ +H  +       D  VW++L 
Sbjct: 210 MVFDWMIGKGIEPDCA---TVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLL 266

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           DMY KCG+++EA+ IF +M  RDVVSWT M+  Y   G       L   +    ++PN  
Sbjct: 267 DMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFV 326

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T A VL+ACA   + + G+ +HG+  R   +      +AL+ MY+KC NV  S +VF+  
Sbjct: 327 TLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKX 386

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD-KG 380
            +     W ++I+G   NG+  KA+E F+ +L     P+      +L A  +A L D + 
Sbjct: 387 SKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPA--YAFLTDLQQ 444

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK-PDKFLWASLLGGC 439
            +  H    + G     +    ++D+ ++ G    A ++ + +P K  D   W++++ G 
Sbjct: 445 ARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGY 504

Query: 440 RIHGNLDLA 448
            +HG+ + A
Sbjct: 505 GMHGHGETA 513



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 205/452 (45%), Gaps = 41/452 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y SL+Q C   +++   K++H+H  + G     +  + L                     
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLL--------------------- 59

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                  +++ + +   G    AR LFDE+     FSW AMI  Y       +AL L+  
Sbjct: 60  -------SSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQ 112

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M        + +T   V+ A        +G  IH   + +GFDSD  V ++L  MY  CG
Sbjct: 113 MLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG 172

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  AR++FD M +R +VSW  MI  YF+ G  +E   +F  +I  GI P+  T   VL 
Sbjct: 173 EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLP 232

Query: 269 ACADHAAEELGKQVHGY--MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
            C+     E+G++VH    +  +G D   +  ++L+ MY+KCGN++ ++ +F  M + D+
Sbjct: 233 VCSYLKELEVGRRVHALVEVKNLGEDISVW--NSLLDMYAKCGNMDEAQMIFYEMDKRDV 290

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSWT+++ GY  NG    AL   +++     +P+ +    VL+AC     +  G +  H 
Sbjct: 291 VSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHG-RCLHG 349

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              +  L         ++D+ A+    + +  V SK   K     W +++ GC IH    
Sbjct: 350 WAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXS-KQRTAPWNAIISGC-IHNG-- 405

Query: 447 LAKRAAE----ALFEIEPENPATYVTMANIYA 474
           L+++A E     L E    N AT  ++   YA
Sbjct: 406 LSRKAIELFKQMLMEAVDPNDATLNSLLPAYA 437


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 268/454 (59%), Gaps = 33/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS   +++++    Q   +E G++VHS +    F   VF++N LLD Y+K          
Sbjct: 238 PSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSK---------- 287

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                +R V                 +AR LF EMP+ D  S+  +I+      +  E+L
Sbjct: 288 ----HDRIV-----------------EARKLFYEMPEVDGISYNVLITCCAWNGRVEESL 326

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+R +Q F      +F  +++LS  +    L +G++IH   + T   S+ +V ++L DM
Sbjct: 327 ELFRELQ-FTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDM 385

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC    EA +IF  +  +  V WTA+I  Y Q+G  E+G  LF E+ ++ I  ++ T+
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATY 445

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A +L ACA+ A+  LGKQ+H  + R G     F+ SALV MY+KCG+++ + ++F  MP 
Sbjct: 446 ASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPV 505

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + VSW +LI+ YAQNG    AL  FE ++ SG QP+ + F+ +L AC+H GLV++GLQY
Sbjct: 506 RNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQY 565

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+S+ + + L    +HYA +VD+L RSGRF EAE ++++MP +PD+ +W+S+L  CRIH 
Sbjct: 566 FNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHK 625

Query: 444 NLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
           N +LA +AA+ LF ++   + A YV+M+NIYA+A
Sbjct: 626 NQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAA 659



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 206/399 (51%), Gaps = 15/399 (3%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           + V + +  +GF P     N  +  + + G++  A+ LFDEM  ++V S NTMI G+ K 
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G+L  AR+LFD M QR   +WT +I GY ++N+ +EA +L+  M      V +  TL+++
Sbjct: 87  GNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCR-HGMVPDHITLATL 145

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           LS  +  + +    ++HG++++ G+DS  +V ++L D Y K  S+  A  +F  M ++D 
Sbjct: 146 LSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDN 205

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V++ A++  Y +EG   +   LF ++   G RP+ FTFA VL A       E G+QVH +
Sbjct: 206 VTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSF 265

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + +  +    F A+AL+  YSK   +  ++K+F  MP  D +S+  LI   A NG  +++
Sbjct: 266 VVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEES 325

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA---- 401
           LE F  L  +        F  +L+   ++  ++ G Q        H      D  +    
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQI-------HSQAIVTDAISEVLV 378

Query: 402 --CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              +VD+ A+  +F EA  + + +  +     W +L+ G
Sbjct: 379 GNSLVDMYAKCDKFGEANRIFADLAHQSS-VPWTALISG 416


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 260/450 (57%), Gaps = 37/450 (8%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           + YS LI+ C  +RA+ EG  +  HL  +G +P +F+ N L++MY K   ++DA      
Sbjct: 14  ATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAH----- 68

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                                      LFD+MPQR+  SWT MIS Y +     +AL+L 
Sbjct: 69  --------------------------QLFDQMPQRNVISWTTMISAYSKCKIHQKALELL 102

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
            +M   +    N +T SSVL A + +  +R+   +H  I++ G +SD  V SAL D++ K
Sbjct: 103 VLMLR-DGVRPNVYTYSSVLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAK 158

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G   +A  +FD+MV  D + W ++IG + Q  R +    LF  + ++G      T   V
Sbjct: 159 LGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 218

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L AC   A  ELG Q H ++ +  YD      +ALV MY KCG++E++++VFN M   D+
Sbjct: 219 LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDV 276

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           ++W+++I+G AQNG   +AL+ FEL+  SGT+P++I  VGVL AC+HAGL++ G  YF S
Sbjct: 277 ITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS 336

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +K+ +G+    +HY C++DLL ++G+  +A  ++++M  +PD   W +LLG CR+  N+ 
Sbjct: 337 MKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMV 396

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA+ AA+ +  ++PE+  TY  ++NIYA++
Sbjct: 397 LAEYAAKKVIALDPEDAGTYTVLSNIYANS 426



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 166/331 (50%), Gaps = 39/331 (11%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +Q+ L+  + +L     P+   YSS+++ C     + + + +H  +   G +  V++ + 
Sbjct: 95  HQKALELLVLMLRDGVRPNVYTYSSVLRACN---GMSDVRMLHCGIIKEGLESDVYVRSA 151

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D++AK G   DA ++FDEM   D   +N++I GF +    + A  LF  M +R  F  
Sbjct: 152 LIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM-KRAGF-- 208

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                        ++ + TL+SVL A + +  L LG + H +I+
Sbjct: 209 -----------------------------IAEQATLTSVLRACTGLALLELGMQAHVHIV 239

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +  +D D ++ +AL DMY KCGS+ +AR++F++M +RDV++W+ MI    Q G  +E   
Sbjct: 240 K--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALK 297

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMY 305
           LF  +  SG +PN  T  GVL AC+     E G      M ++ G +P       ++ + 
Sbjct: 298 LFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLL 357

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            K G ++++ K+ N M   PD V+W +L+  
Sbjct: 358 GKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 388



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 109/209 (52%), Gaps = 9/209 (4%)

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G+  ++ T++ ++  C  H A   G  +  ++   G+ P  F  + L++MY K   + ++
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            ++F+ MP+ +++SWT++I+ Y++  +  KALE   L+L+ G +P+   +  VL AC   
Sbjct: 68  HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACN-- 125

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G+ D  + +   IKE  GL       + ++D+ A+ G   +A  V  +M +  D  +W S
Sbjct: 126 GMSDVRMLHCGIIKE--GLESDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNS 182

Query: 435 LLGG----CRIHGNLDLAKRAAEALFEIE 459
           ++GG     R    L+L KR   A F  E
Sbjct: 183 IIGGFAQNSRSDVALELFKRMKRAGFIAE 211



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+ C    L++A ++ +Q+       +S++I    QN   +E  K+   +KSSG KP  
Sbjct: 252 VDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNY 311

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE-------RDVCSYNTMISGFTKGGSLEQARNL 114
                +L   +  G + D    F  M++       R+   Y  MI    K G L+ A  L
Sbjct: 312 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGRE--HYGCMIDLLGKAGKLDDAVKL 369

Query: 115 FDEMP-QRDNFSWTAMI 130
            +EM  + D  +W  ++
Sbjct: 370 LNEMECEPDAVTWRTLL 386


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/521 (33%), Positives = 277/521 (53%), Gaps = 55/521 (10%)

Query: 11  LKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L++AL +  ++      P+    +S++  C   +AL  GK +H      G    V++   
Sbjct: 335 LEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGS 394

Query: 67  LLDMYAKCGN-------------------------------ISDAQTLFDEMQER----D 91
           ++DMY+KCG+                               + DA  L   MQ+     D
Sbjct: 395 VIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPD 454

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYR 147
           V +YNT++SG  + G   QA  L  EM Q     +  S+  +ISG+ +     EAL ++R
Sbjct: 455 VITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFR 514

Query: 148 MMQNFENSVS-----------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
           +MQ+  +  +           N  T++  L A + +     GKEIHGY +R GF+ +  V
Sbjct: 515 IMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFV 574

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            SAL DMY KC  ++ A ++F ++  R+ VSW A++  Y    + EE   LF E++  G+
Sbjct: 575 SSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGL 634

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSK 315
           +P++ TF  +  AC D AA   G+ +HGY  +   D    A  SAL+ MY+KCG++ ++K
Sbjct: 635 QPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAK 694

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            VF+     D+  W ++I+ ++ +GM   A   F  +   G  PDHI FV +L+AC   G
Sbjct: 695 SVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDG 754

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LV++G +YF+S++  +G+  T +HY C+V +L  +G   EA D I +MP  PD  +WA+L
Sbjct: 755 LVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATL 814

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           L  CR+H N ++ +RAA+ALFE+EP+N   Y+ ++NIY S+
Sbjct: 815 LQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSS 855



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 201/467 (43%), Gaps = 87/467 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   +  ++++ C        GK VH  +     +  VF+ N L+  Y+ CG++  ++++
Sbjct: 181 PDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSV 240

Query: 84  FDEMQERDVCSYNTMIS-----------------------------------GFTKGGSL 108
           F  MQERDV S+  +IS                                   GF + G +
Sbjct: 241 FHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEI 300

Query: 109 EQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLS 163
           + A    +EMP+R       SW  +ISG V+     +ALD++ RM+   E+   N  T++
Sbjct: 301 DLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDP--NIITIA 358

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           S+L A + ++ LRLGK IH    + G   +  V  ++ DMY KCGS + A ++F K  ++
Sbjct: 359 SILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENK 418

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           +   W  MI  Y  EG+ E+   L   + K G +P+  T+  +L+  A +  +    ++ 
Sbjct: 419 NTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELL 478

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
             M ++G                                +P++VS+  LI+G+ Q+G+  
Sbjct: 479 SEMVQMGL-------------------------------KPNVVSFNVLISGFQQSGLSY 507

Query: 344 KALEYFELL------------LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +AL+ F ++            L    +P+ I   G L AC    L  +G +  H    ++
Sbjct: 508 EALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQG-KEIHGYTLRN 566

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           G        + +VD+ A+      A  V  ++  + +   W +L+ G
Sbjct: 567 GFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGR-NTVSWNALMAG 612



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 160/336 (47%), Gaps = 42/336 (12%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
           SLE AR L DE+P R   ++ A+I  Y R  Q  E    +R+M  +E  + +K+ + ++L
Sbjct: 132 SLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMV-YEGMLPDKYLVPTIL 190

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
            A SA+   R+GK +HG+++R   +SD  V +AL   Y  CG +  +R +F  M +RDVV
Sbjct: 191 KACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVV 250

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SWTA+I  Y +EG  +E   +F  +   G++P+  ++                       
Sbjct: 251 SWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISW----------------------- 287

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMP 342
                       SAL+  +++ G ++ + +    MP    +P + SW  +I+G  QNG  
Sbjct: 288 ------------SALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYL 335

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           + AL+ F  +L     P+ I    +L ACT    +  G +  H I  KHG+         
Sbjct: 336 EDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLG-KAIHXIAXKHGIVGNVYVEGS 394

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           ++D+ ++ G +  AE V  K   K +  +W  ++  
Sbjct: 395 VIDMYSKCGSYDYAEKVFXKAENK-NTAMWNEMIAA 429



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 174/345 (50%), Gaps = 9/345 (2%)

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK--FTLSSVLSAV 169
           RN F  +P+      T  I G+  Y+     +    ++ +F ++++N     +S  +S +
Sbjct: 32  RNFF-PLPKSKFRVSTPRIIGFKHYSTVSNHIHPQTLLPSFVDTLTNSSPTEISDSISLL 90

Query: 170 SAIQCLRLGKEIHGYIMR-TGFDSDEVVWSALSDMYGKCG-SINEARQIFDKMVDRDVVS 227
           +    L   ++IH  +++         + + L  +Y K   S+ +AR++ D++ +R V +
Sbjct: 91  NRCSTLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPA 150

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           + A+I  Y +  + +E F+ F  ++  G+ P+ +    +L AC+      +GK VHG++ 
Sbjct: 151 YAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVI 210

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           R   +   F  +AL+H YS CG++ +S+ VF+ M   D+VSWT+LI+ Y + G+ D+A  
Sbjct: 211 RKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKH 270

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            F L+   G +PD I +  +L+     G +D  L+    + E+ GL  T + +  I+   
Sbjct: 271 IFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPER-GLQPTVNSWNGIISGC 329

Query: 408 ARSGRFHEAEDVISKM---PMKPDKFLWASLLGGCRIHGNLDLAK 449
            ++G   +A D+ S+M   P  P+    AS+L  C     L L K
Sbjct: 330 VQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGK 374



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 8/198 (4%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNC 66
           +  LK  L++L +   PS   +  L   C    A+  G+ +H +            I + 
Sbjct: 620 EEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSA 679

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRD 122
           L+DMYAKCG+I DA+++FD   E+DV  +N MIS F+  G    A  +F +M       D
Sbjct: 680 LIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPD 739

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + ++ +++S   R     E    ++   + E S     TL      V  +    L  E  
Sbjct: 740 HITFVSLLSACARDGLVEEG---WKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEAL 796

Query: 183 GYIMRTGFDSDEVVWSAL 200
            +I +  +  D  +W+ L
Sbjct: 797 DFIRQMPYPPDACMWATL 814


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 272/453 (60%), Gaps = 15/453 (3%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           YS LI  C   R ++    VH HL  +      F++N L+D Y+KCG    A   F ++ 
Sbjct: 13  YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLP 72

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            +   S+NT+IS ++K G  ++A NLFD+MPQR+  S+ ++ISG +++ + +  + +   
Sbjct: 73  NKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIVG 132

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+       N    ++++ A        L   +  Y+     + + V W+++   Y +  
Sbjct: 133 ME------WNVILNNALIDAYGKCGEPNLSFSVFCYMP----ERNVVSWTSMVVAYTRAC 182

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            ++EA ++F  M  ++ VSWTA++  + + G  +E F +F ++++ G+RP+A TF  V++
Sbjct: 183 RLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVID 242

Query: 269 ACADHAAEELGKQVHGYMTR---IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           ACA  A    GKQVHG + R    G     +  +AL+ MY+KCG++++++ +F   P  D
Sbjct: 243 ACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRD 302

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +V+W +LI G+AQNG  +++L  F  ++++  +P+H+ F+GVL+ C HAGL ++GLQ   
Sbjct: 303 VVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVD 362

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP--MKPDKFLWASLLGGCRIHG 443
            ++ ++G+   A+HYA ++DLL R  R  EA  +I K+P  +K    +W ++LG CR+HG
Sbjct: 363 LMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHG 422

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           NLDLA++AAE LFE+EPEN   YV +ANIYA++
Sbjct: 423 NLDLARKAAEKLFELEPENTGRYVMLANIYAAS 455



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL---KSSGFKPGVFISNCLLDMYA 72
           Q+L +   PS   + S+I  C Q   +  GK+VH  +     SG    V++ N L+DMYA
Sbjct: 224 QMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYA 283

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTA 128
           KCG++  A+ LF+    RDV ++NT+I+GF + G  E++  +F  M     + ++ ++  
Sbjct: 284 KCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLG 343

Query: 129 MISGYVRYNQPIEALDLYRMMQ 150
           ++SG        E L L  +M+
Sbjct: 344 VLSGCNHAGLDNEGLQLVDLME 365


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 171/474 (36%), Positives = 264/474 (55%), Gaps = 6/474 (1%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           Q+ L    Q++ +   P    Y S+++ C +   L  GK+VH  + +S  K  + + N L
Sbjct: 257 QKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNAL 316

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN---- 123
           + MY KCG +  A+ LFD++ ERD  S+N+MIS +   G   +A  LF  M   D     
Sbjct: 317 ISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNI 376

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
             W  +  GY+R      AL+L   M+   + + +   L   L A S I   +LGKEIH 
Sbjct: 377 IIWNTIAGGYLRTGNYKGALELLSQMRKXGSHL-DSVALIIGLGACSHIGDAKLGKEIHS 435

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           + +R+ F   + V ++L  MY +C  +  A  +F  M  + ++SW ++I       R EE
Sbjct: 436 FAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEE 495

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALV 302
              L  E++ SGI PN  T A VL  CA  A  + GK+ H YMTR   +  +    +ALV
Sbjct: 496 ASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALV 555

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY++ G V  +++VF+ +   D +++TS+IAGY   G    AL+ FE +     +PDHI
Sbjct: 556 DMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI 615

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
             + VL+AC+H+GLV +G   F  ++  +GLT   +H+AC+ DL  R+G  ++A+++I  
Sbjct: 616 TMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRN 675

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           MP KP   +WA+L+G CRIH N ++ + AAE L E++PENP  YV +AN+YA+A
Sbjct: 676 MPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAA 729



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 208/492 (42%), Gaps = 78/492 (15%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           I HP     SSL+  C   ++L EG+++H H+ S GF+    +   L+  Y+    + DA
Sbjct: 173 IVHP----ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDA 228

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
             + +         +N +IS + + G  ++A + + +M ++            +R     
Sbjct: 229 HVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKG-----------IR----- 272

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
                            + FT  SVL A      L  GKE+H  I  +      +V +AL
Sbjct: 273 ----------------PDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNAL 316

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MYGKCG +  AR +FDK+ +RD VSW +MI  Y   G   E F LF  +    I  N 
Sbjct: 317 ISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNI 376

Query: 261 FTFAGV-----------------------------------LNACADHAAEELGKQVHGY 285
             +  +                                   L AC+     +LGK++H +
Sbjct: 377 IIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSF 436

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
             R  +       ++L+ MYS+C +++++  +F  M    L+SW S+I+G       ++A
Sbjct: 437 AIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEA 496

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
                 +L SG +P+++    VL  C     +  G ++   +  +         +  +VD
Sbjct: 497 SFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVD 556

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL--FEIEPENP 463
           + ARSG+  EA  V   +  + DK  + S++ G  + G    A +  E +  F+I+P+  
Sbjct: 557 MYARSGKVLEARRVFDMLGER-DKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPD-- 613

Query: 464 ATYVTMANIYAS 475
             ++TM  + ++
Sbjct: 614 --HITMIAVLSA 623


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/415 (38%), Positives = 242/415 (58%), Gaps = 48/415 (11%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++D YA+ G I  A  LF++M ER+V S+NT++S   + G +E+AR LFD MP+RD  
Sbjct: 165 NTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVI 224

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWTAMI+G +      EALDL+  M                                   
Sbjct: 225 SWTAMIAGLLD-----EALDLFERMP---------------------------------- 245

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
                 + D   W+ +     + G +  AR++F++M  ++V+SWT MI    QEG  EE 
Sbjct: 246 ------ERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEA 299

Query: 245 FALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             +FS ++ + G +PN  TF  VL AC++ A    G+QVH  +++  Y   +F  SAL++
Sbjct: 300 LKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALIN 359

Query: 304 MYSKCGNVENSKKVFN-GMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           MYSKCG +  ++K+F+ GM  + DLVSW  +IA YA +G   +A+ +F+ + KSG +PD 
Sbjct: 360 MYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDD 419

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           + +VG+L+AC+HAGLV++GL+YF  + +   +    DHYAC+VDL  R+GR  EA   I 
Sbjct: 420 VTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIE 479

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++  KP   +W +LL GC +H N+ + K+AA+ L E+EPEN  TY+ ++NIYAS 
Sbjct: 480 RLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYAST 534


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 272/521 (52%), Gaps = 68/521 (13%)

Query: 22  SHPSPSIYSS--LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           SH  P  Y+   L+Q C    +  EG+++H+H  SSGF   V++ N L+++YA CG++  
Sbjct: 99  SHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGS 158

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR------------------ 121
           A+ +F+E    D+ S+NT+++G+ + G +E+A  +F+ MP+R                  
Sbjct: 159 ARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCV 218

Query: 122 ---------------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
                          D  SW+AM+S Y +     EAL L+  M+       ++  + S L
Sbjct: 219 EKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKG-SGVAVDEVVVVSAL 277

Query: 167 SAVSAIQCLRLGKEIHGYIMRTG---------------------------FDS-----DE 194
           SA S +  + +G+ +HG  ++ G                           FD      D 
Sbjct: 278 SACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDL 337

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           + W+++   Y +CGSI +A  +F  M ++DVVSW+AMI  Y Q     E  ALF E+   
Sbjct: 338 ISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLH 397

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G+RP+       ++AC   A  +LGK +H Y++R         ++ L+ MY KCG VEN+
Sbjct: 398 GVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENA 457

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            +VF  M    + +W ++I G A NG  +++L  F  + K+GT P+ I F+GVL AC H 
Sbjct: 458 LEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHM 517

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLV+ G  YF+S+  +H +     HY C+VDLL R+G   EAE++I  MPM PD   W +
Sbjct: 518 GLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGA 577

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LLG CR H + ++ +R    L +++P++   +V ++NIYAS
Sbjct: 578 LLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYAS 618



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 123/242 (50%), Gaps = 10/242 (4%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI---NEARQIFD 218
           +S++ S + + +C R  K++    + TG  +D    S L +      ++   + + +IF+
Sbjct: 3   VSTLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFN 62

Query: 219 KMVDRDVVSW-TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            + + +  +W T M    + +    +    +   + S  +P+++T+  +L  CA   +E 
Sbjct: 63  HLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEF 122

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+Q+H +    G+D   +  + L+++Y+ CG+V ++++VF   P  DLVSW +L+AGY 
Sbjct: 123 EGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYV 182

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI--KEKHGLTY 395
           Q G  ++A   FE + +  T    I    ++      G V+K  + F+ +  +E+  +++
Sbjct: 183 QAGEVEEAERVFEGMPERNT----IASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSW 238

Query: 396 TA 397
           +A
Sbjct: 239 SA 240



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 38/247 (15%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      P  +   S I  C     L+ GK +H+++  +  +  V +S  L+
Sbjct: 386 EALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLI 445

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY KCG + +A  +F  M+E+ V ++N +I G    GS+EQ+ N+F +M +        
Sbjct: 446 DMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKK-------- 497

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-IHGYIMR 187
                                     +V N+ T   VL A   +  +  G+   +  I  
Sbjct: 498 ------------------------TGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHE 533

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFA 246
              +++   +  + D+ G+ G + EA ++ D M +  DV +W A++G   +    E G  
Sbjct: 534 HKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGER 593

Query: 247 LFSELIK 253
           L  +LI+
Sbjct: 594 LGRKLIQ 600


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/481 (35%), Positives = 258/481 (53%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHL--KSS 55
           I  L   +    AL+++ +++     PS     S++        +  GK +H+++   S+
Sbjct: 167 IRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSN 226

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
               GV  +  LLDMYAKCG+                               L  AR LF
Sbjct: 227 NEHMGVPTTTALLDMYAKCGH-------------------------------LGLARQLF 255

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
           + + Q+   SWTAMI+G +R N+  E   L+  MQ  EN   N+ T+ S++        L
Sbjct: 256 NGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE-ENIFPNEITMLSLIVECGFTGAL 314

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           +LGK++H YI+R GF     + +AL DMYGKC  I  AR +FD   +RDV+ WTAM+  Y
Sbjct: 315 QLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAY 374

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q    ++ F LF ++  SG+RP   T   +L+ CA   A +LGK VH Y+ +   +   
Sbjct: 375 AQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDC 434

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              +ALV MY+KCG++  + ++F      D+  W ++I G+A +G  ++AL+ F  + + 
Sbjct: 435 ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 494

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +P+ I F+G+L AC+HAGLV +G + F  +    GL    +HY C+VDLL R+G   E
Sbjct: 495 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDE 554

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A ++I  MP+KP+  +W +L+  CR+H N  L + AA  L EIEPEN    V M+NIYA+
Sbjct: 555 AHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAA 614

Query: 476 A 476
           A
Sbjct: 615 A 615



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 206/415 (49%), Gaps = 36/415 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S+++ C Q    + GK++H  +   G    VF+ N L+ MY +C  +  A+ +FD+M ER
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           DV S++TMI   ++    + A  L  EM                                
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREM-------------------------------- 186

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALSDMYGKCG 208
           NF     ++  + S+++  +    +R+GK +H Y++R   +    V   +AL DMY KCG
Sbjct: 187 NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG 246

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  ARQ+F+ +  + VVSWTAMI    +  R EEG  LF  + +  I PN  T   ++ 
Sbjct: 247 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIV 306

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            C    A +LGKQ+H Y+ R G+      A+ALV MY KC ++ N++ +F+     D++ 
Sbjct: 307 ECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMI 366

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT++++ YAQ    D+A   F+ +  SG +P  +  V +L+ C  AG +D G ++ HS  
Sbjct: 367 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYI 425

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +K  +         +VD+ A+ G  + A  +  +  +  D  +W +++ G  +HG
Sbjct: 426 DKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHG 479



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
           F   SVL A   +   +LGKEIHG++++ G D D  V +AL  MYG+C  +  AR +FDK
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M++RDVVSW+ MI    +    +    L  E+    +RP+      ++N  AD A   +G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 280 KQVHGYMTRIGYDPYSFA--ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           K +H Y+ R   + +      +AL+ MY+KCG++  ++++FNG+ +  +VSWT++IAG  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           ++   ++  + F  + +    P+ I  + ++  C   G +  G Q  H+   ++G + + 
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ-LHAYILRNGFSVSL 333

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                +VD+  +      A  +      + D  +W ++L
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNR-DVMIWTAML 371


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 174/521 (33%), Positives = 279/521 (53%), Gaps = 55/521 (10%)

Query: 11  LKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L++AL +  ++      P+    +S++  C   +AL  GK +H+     G    V++   
Sbjct: 26  LEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHAIALKHGIVGNVYVEGS 85

Query: 67  LLDMYAKCGN-------------------------------ISDAQTLFDEMQER----D 91
           ++DMY+KCG+                               + DA  L   MQ+     D
Sbjct: 86  VIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPD 145

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYR 147
           V +YNT++SG  + G   QA  L  EM Q     +  S+  +ISG+ +     EAL ++R
Sbjct: 146 VITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFR 205

Query: 148 MMQNFENSVS-----------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
           +MQ+  +  +           N  T++  L A + +     GKEIHGY +R GF+ +  V
Sbjct: 206 IMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFV 265

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            SAL DMY KC  ++ A ++F ++  R+ VSW A++  Y    + EE   LF E++  G+
Sbjct: 266 SSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGL 325

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSK 315
           +P++ TF  +  AC D AA   G+ +HGY  +   D    A ASAL+ MY+KCG++ ++K
Sbjct: 326 QPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAK 385

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            VF+     D+  W ++I+ ++ +GM   A   F  +   G  PDHI FV +L+AC   G
Sbjct: 386 SVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLSACARDG 445

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LV++G +YF+S++  +G+  T +HY C+V +L  +G   EA D I +MP  PD  +WA+L
Sbjct: 446 LVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATL 505

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           L  CR+H N ++ +RAA+ALFE+EP+N   Y+ ++NIY S+
Sbjct: 506 LQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSS 546



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 148/327 (45%), Gaps = 48/327 (14%)

Query: 125 SWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           SW  +ISG V+     +ALD++ RM+   E+   N  T++S+L A + ++ LRLGK IH 
Sbjct: 12  SWNGIISGCVQNGYLEDALDMFSRMLWYPEDP--NIITIASILPACTGLKALRLGKAIHA 69

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
             ++ G   +  V  ++ DMY KCGS + A ++F K  +++   W  MI  Y  EG+ E+
Sbjct: 70  IALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVED 129

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              L   + K G +P+  T+  +L+  A +  +    ++   M ++G             
Sbjct: 130 ALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGL------------ 177

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL----------- 352
                              +P++VS+  LI+G+ Q+G+  +AL+ F ++           
Sbjct: 178 -------------------KPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNE 218

Query: 353 -LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
            L    +P+ I   G L AC    L  +G +  H    ++G        + +VD+ A+  
Sbjct: 219 VLNLSMRPNPITITGALPACADLNLWCQGKE-IHGYTLRNGFEPNIFVSSALVDMYAKCH 277

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGG 438
               A  V  ++  + +   W +L+ G
Sbjct: 278 DMDSANKVFFRIDGR-NTVSWNALMAG 303



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           V SW  +I    Q G  E+   +FS ++     PN  T A +L AC    A  LGK +H 
Sbjct: 10  VNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHA 69

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
              + G     +   +++ MYSKCG+ + ++KVF      +   W  +IA Y   G  + 
Sbjct: 70  IALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVED 129

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           AL     + K G +PD I +  +L+     GL  +  +    + +  GL      +  ++
Sbjct: 130 ALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQM-GLKPNVVSFNVLI 188

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
               +SG  +EA  V   M    D         GC  +  L+L+ R
Sbjct: 189 SGFQQSGLSYEALKVFRIMQSPSD---------GCNPNEVLNLSMR 225



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 8/198 (4%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNC 66
           +  LK  L++L +   PS   +  L   C    A+  G+ +H +            I++ 
Sbjct: 311 EEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASA 370

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRD 122
           L+DMYAKCG+I DA+++FD   E+DV  +N MIS F+  G    A  +F +M       D
Sbjct: 371 LIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPD 430

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + ++ +++S   R     E    ++   + E S     TL      V  +    L  E  
Sbjct: 431 HITFVSLLSACARDGLVEEG---WKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEAL 487

Query: 183 GYIMRTGFDSDEVVWSAL 200
            +I +  +  D  +W+ L
Sbjct: 488 DFIRQMPYPPDACMWATL 505



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           +P + SW  +I+G  QNG  + AL+ F  +L     P+ I    +L ACT    +  G +
Sbjct: 7   QPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLG-K 65

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             H+I  KHG+         ++D+ ++ G +  AE V  K   K +  +W  ++  
Sbjct: 66  AIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENK-NTAMWNEMIAA 120


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/503 (33%), Positives = 271/503 (53%), Gaps = 37/503 (7%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A +I + I  P   IY+ +I+   +N +  +   +   L+  G  P  F    +   
Sbjct: 82  LHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKA 141

Query: 71  YAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
               G + + + ++  +     E D    N+++  + + G ++  R +F+EMPQRD  SW
Sbjct: 142 IGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSW 201

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             +ISGYV+  +  +A+D++R MQ   +   N+ T+ S LSA  A++ L LGKEIH Y+ 
Sbjct: 202 NVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVR 261

Query: 187 -RTGFD-----------------------------SDEVVWSALSDMYGKCGSINEARQI 216
            + GF                                 + W+++   Y  CG ++EAR++
Sbjct: 262 EQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEAREL 321

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F++   RDVV WTAMI  Y Q  R ++  ALF E+    + P+ FT   +L  CA     
Sbjct: 322 FERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTL 381

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           E GK +HGY+        +   +AL+ MY+KCG +E S ++FNG+   D  SWTS+I G 
Sbjct: 382 EQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGL 441

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           A NG   KALE F  ++++G +PD I F+GVL+AC+H GLV++G ++F S+   + +   
Sbjct: 442 AMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPK 501

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF---LWASLLGGCRIHGNLDLAKRAAE 453
            +HY C++DLL R+G+  EAE++I K P   ++    L+ +LL  CR HGN+++ +R A+
Sbjct: 502 LEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAK 561

Query: 454 ALFEIEPENPATYVTMANIYASA 476
            L  IE  + + +  +ANIYASA
Sbjct: 562 RLVGIESGDSSVHTLLANIYASA 584



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 186/321 (57%), Gaps = 10/321 (3%)

Query: 9   RRLKEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVF 62
           RR ++A+ +  ++       P+ +   S +  C   + LE GK++H +++   GF   + 
Sbjct: 212 RRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFT--IK 269

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           I N L+DMY KCG++S A+ +F++M  + V  + +M+SG+   G L++AR LF+  P RD
Sbjct: 270 IGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRD 329

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
              WTAMI+GYV++N+  +A+ L+R MQ  +    ++FTL ++L+  + +  L  GK IH
Sbjct: 330 VVLWTAMINGYVQFNRFDDAVALFREMQ-IKRVSPDRFTLVALLTGCAQLGTLEQGKWIH 388

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           GYI       D VV +AL +MY KCG I ++ +IF+ + ++D  SWT++I      G+  
Sbjct: 389 GYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTS 448

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASAL 301
           +   LF+E++++G++P+  TF GVL+AC+     E G++    MT +   +P       L
Sbjct: 449 KALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCL 508

Query: 302 VHMYSKCGNVENSKKVFNGMP 322
           + +  + G ++ ++++    P
Sbjct: 509 IDLLGRAGQLDEAEELIEKSP 529



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/530 (24%), Positives = 232/530 (43%), Gaps = 129/530 (24%)

Query: 18  LHQISHP------SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           LH +S P      S     S I   +  ++++  K++ + +  +GF      S   L+ +
Sbjct: 15  LHFLSKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQ----SGDTLNKF 70

Query: 72  AKC------GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
             C      GN+  A+ +F+ +    +  YN +I  FTK GS  +A  LF ++ +     
Sbjct: 71  MVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLRE----- 125

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                      E    + FT   V  A+  +  +R G++++G++
Sbjct: 126 ---------------------------EGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +++G + D  V ++L DMY + G +   RQ+F++M  RDVVSW  +I  Y +  R E+  
Sbjct: 159 VKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAV 218

Query: 246 ALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVH 303
            +F  +  +S +RPN  T    L+AC      ELGK++H Y+  ++G+       +ALV 
Sbjct: 219 DVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIK--IGNALVD 276

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE------LLLKSG- 356
           MY KCG++  ++++FN MP   ++ WTS+++GY   G  D+A E FE      ++L +  
Sbjct: 277 MYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAM 336

Query: 357 ------------------------TQPDHIVFVGVLTACTH------------------- 373
                                     PD    V +LT C                     
Sbjct: 337 INGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKI 396

Query: 374 ----------------AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
                            G ++K L+ F+ +KEK   ++T+     I+  LA +G+  +A 
Sbjct: 397 MIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTS-----IICGLAMNGKTSKAL 451

Query: 418 DVISKMP---MKPDKFLWASLLGGCRIHGNLDLAK---RAAEALFEIEPE 461
           ++ ++M    +KPD   +  +L  C   G ++  +   R+  A+++IEP+
Sbjct: 452 ELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPK 501



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 160/326 (49%), Gaps = 15/326 (4%)

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF----DSDEVVWSALSDMYGKCGSI 210
           S S+ FT  S +  +   + ++  K+I   I+RTGF    D+        +D     G++
Sbjct: 25  STSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTD--PSIGNL 82

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + A +IF+ +    +  +  +I  + + G   +   LF +L + G+ P+ FT+  V  A 
Sbjct: 83  HYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAI 142

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
                   G++V+G++ + G +  ++  ++L+ MY++ G V+N ++VF  MP+ D+VSW 
Sbjct: 143 GCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWN 202

Query: 331 SLIAGYAQNGMPDKALEYFELL-LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            LI+GY +    + A++ F  +  +S  +P+    V  L+AC    +++ G +    ++E
Sbjct: 203 VLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVRE 262

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           + G T    +   +VD+  + G    A ++ + MP+K     W S++ G    G LD A+
Sbjct: 263 QLGFTIKIGN--ALVDMYCKCGHLSIAREIFNDMPIKT-VICWTSMVSGYVNCGQLDEAR 319

Query: 450 RAAEALFEIEP-ENPATYVTMANIYA 474
                LFE  P  +   +  M N Y 
Sbjct: 320 E----LFERSPVRDVVLWTAMINGYV 341


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 251/446 (56%), Gaps = 33/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +S++  C    ALE+G++VH++          F+ N L+DMYAKC +++D          
Sbjct: 347 TSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTD---------- 396

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                                AR +F+ M   D  S+ AMI GY R ++  EALDL+R M
Sbjct: 397 ---------------------ARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREM 435

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +    S        S+L   +++  L L  +IHG I++ G   DE   SAL D+Y KC  
Sbjct: 436 R-LSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSR 494

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + +AR +F+++ D+D+V WTAM   Y Q+   EE   L+  L  S ++PN FTFA V+ A
Sbjct: 495 VGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITA 554

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
            ++ A+   G+Q H  + ++G+D   F A+ LV MY+K G++E + K F      D   W
Sbjct: 555 ASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACW 614

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            S+IA YAQ+G  +KAL+ FE ++  G +P+++ FVGVL+AC+H GL+D G  +F S+ +
Sbjct: 615 NSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ 674

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
             G+    +HY C+V LL R+G+ +EA++ I KMP+K    +W SLL  CR+ GN++L  
Sbjct: 675 -FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGT 733

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            AAE      P +  +YV ++NI+AS
Sbjct: 734 YAAEMAISCNPADSGSYVLLSNIFAS 759



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 210/418 (50%), Gaps = 40/418 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  I +S+++ C Q   L    ++H  +   G+   V++   L+D Y            
Sbjct: 139 PNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFY------------ 186

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                              TK   ++ AR LFD +  + +F+WT +I+GY +  +   +L
Sbjct: 187 -------------------TKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSL 227

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M+   +   +K+ LSSVLSA   ++ L  GK+IH Y++R+G   D  + +   D 
Sbjct: 228 KLFDQMKE-GHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDF 286

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +   R++FD+MVD++VVSWT +I    Q     +   LF E+ + G  P+AF  
Sbjct: 287 YFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGC 346

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VLN+C    A E G+QVH Y  ++  D   F  + L+ MY+KC ++ +++KVFN M  
Sbjct: 347 TSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAA 406

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV---GVLTACTHAGLVDKG 380
            DLVS+ ++I GY++     +AL+ F  +  S + P  ++FV   GV  +  H  L ++ 
Sbjct: 407 IDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQ- 465

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
               H +  K+G++      + ++D+ ++  R  +A  V  ++  K D  +W ++  G
Sbjct: 466 ---IHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDK-DIVVWTAMFSG 519



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 179/366 (48%), Gaps = 1/366 (0%)

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           K G  ++N L   +  C     ++ +     + D+   NT++  ++K   +  A  LFD 
Sbjct: 40  KIGRELANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDT 99

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  ++  +W++M+S Y  ++  +EAL L+       N   N++ L+SV+ A +    L  
Sbjct: 100 MSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNP 159

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
             +IHG +++ G+  D  V ++L D Y K   I++AR +FD +  +   +WT +I  Y +
Sbjct: 160 ALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSK 219

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +GR +    LF ++ +  + P+ +  + VL+AC      E GKQ+H Y+ R G       
Sbjct: 220 QGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSM 279

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +  +  Y KC  V+  +K+F+ M   ++VSWT++IAG  QN     AL+ F  + + G 
Sbjct: 280 VNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGW 339

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD      VL +C     ++KG Q  H+   K  +         ++D+ A+     +A 
Sbjct: 340 NPDAFGCTSVLNSCGSLVALEKGRQ-VHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDAR 398

Query: 418 DVISKM 423
            V + M
Sbjct: 399 KVFNLM 404



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 162/338 (47%), Gaps = 37/338 (10%)

Query: 8   QRRLKEALQILHQ----ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           Q +L EAL +  +    +S P+  I+ SL+        LE   ++H  +   G     F 
Sbjct: 422 QDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFA 481

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            + L+D+Y+KC  + DA+ +F+E+Q++D+  +  M SG+T+    E              
Sbjct: 482 GSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENE-------------- 527

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
                            E+L LY+ +Q       N+FT ++V++A S I  LR G++ H 
Sbjct: 528 -----------------ESLKLYKCLQ-MSRLKPNEFTFAAVITAASNIASLRHGQQFHN 569

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            +++ GFD D  V + L DMY K GSI EA + F     +D   W +MI  Y Q G  E+
Sbjct: 570 QVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEK 629

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              +F ++I  G++PN  TF GVL+AC+     +LG      M++ G +P       +V 
Sbjct: 630 ALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVCMVS 689

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
           +  + G +  +K+    MP +   V W SL++    +G
Sbjct: 690 LLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSG 727


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 272/478 (56%), Gaps = 5/478 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      + +AL++  +I +P    +S++I    Q    +E  ++   ++  G +P  
Sbjct: 93  VDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQ 152

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F  + L+      G++   Q++   +     E D    N +I  + K   +E    +F+ 
Sbjct: 153 FTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEA 212

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M   D  SW A++SG+           ++  M   E    N FT  SVL + S++     
Sbjct: 213 MTNPDLVSWNALLSGFYDSQTCGRGPRIFYQML-LEGFKPNMFTFISVLRSCSSLLDPEF 271

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK++H +I++   D D+ V +AL DMY K   + +A   FD++V+RD+ SWT +I  Y Q
Sbjct: 272 GKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQ 331

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             + E+    F ++ + GI+PN +T A  L+ C+  A  E G+Q+H    + G+    F 
Sbjct: 332 TDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFV 391

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            SALV +Y KCG +E+++ +F G+   D+VSW ++I+GY+Q+G  +KALE F ++L  G 
Sbjct: 392 GSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGI 451

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD   F+GVL+AC+  GLV++G + F S+ + +G+  + +HYAC+VD+L R+G+F+E +
Sbjct: 452 MPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVK 511

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             I +M + P   +W ++LG C++HGN+D  ++AA+ LFE+EP   ++Y+ ++NI+AS
Sbjct: 512 IFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFAS 569



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 224/442 (50%), Gaps = 41/442 (9%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S++++ C    +L EGK +H+    SG +   F+   L+DMY+KCG + DA  +F +++ 
Sbjct: 55  STVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRN 114

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
            DV +++ MI+G  + G  ++A  LF  M ++                            
Sbjct: 115 PDVVAWSAMITGLDQQGHGQEAAELFHLMRRK---------------------------- 146

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                +  N+FTLSS++S  + +  LR G+ IHG I + GF+SD +V + L  MY K   
Sbjct: 147 ----GARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRC 202

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + +  ++F+ M + D+VSW A++  ++       G  +F +++  G +PN FTF  VL +
Sbjct: 203 VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRS 262

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+     E GKQVH ++ +   D   F  +ALV MY+K   +E++   F+ +   D+ SW
Sbjct: 263 CSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSW 322

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T +I+GYAQ    +KA++YF  + + G +P+       L+ C+H   ++ G Q  H++  
Sbjct: 323 TVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQ-LHAVAV 381

Query: 390 KHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K G  +  D +  + +VDL  + G    AE  I K  +  D   W +++ G   HG  + 
Sbjct: 382 KAG--HFGDIFVGSALVDLYGKCGCMEHAE-AIFKGLISRDIVSWNTIISGYSQHGQGEK 438

Query: 448 AKRAAEALFE--IEPENPATYV 467
           A  A   +    I P+  AT++
Sbjct: 439 ALEAFRMMLSEGIMPDE-ATFI 459



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 189/357 (52%), Gaps = 12/357 (3%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           +E A  LF  MP+++  SW A+++GY +     + L L+  M+  E   S KFTLS+VL 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFS-KFTLSTVLK 59

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             +    LR GK +H   +R+G + DE +  +L DMY KCG++ +A ++F K+ + DVV+
Sbjct: 60  GCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W+AMI    Q+G  +E   LF  + + G RPN FT + +++   +      G+ +HG + 
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           + G++  +  ++ L+ MY K   VE+  KVF  M  PDLVSW +L++G+  +    +   
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHY--ACIV 404
            F  +L  G +P+   F+ VL +C+     + G Q + H IK     +   D +    +V
Sbjct: 240 IFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN----SSDDDDFVGTALV 295

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           D+ A++    +A     ++ +  D F W  ++ G   +   D A++A +   +++ E
Sbjct: 296 DMYAKARCLEDAGVAFDRL-VNRDIFSWTVIISG---YAQTDQAEKAVKYFRQMQRE 348


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 243/388 (62%), Gaps = 1/388 (0%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + ++C  N ++  + K G+L +A  +F+EM  RD  SW A+I+ + +     + L L+  
Sbjct: 408 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVW 467

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M        ++FT  SVL A +  Q L  G EIH  I+++    D  V  AL DMY KCG
Sbjct: 468 MLQ-SGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCG 526

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +A ++ D++ ++ VVSW A+I  +  + + EE    FS++++ G+ P+ FT+A +L+
Sbjct: 527 MMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILD 586

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            CA+    ELGKQ+H  + +      ++ +S LV MYSKCGN+++ + +F   P  D V+
Sbjct: 587 TCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVT 646

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W +++ GYAQ+G+ ++AL+ FE +     +P+H  F+ VL AC H GLV+KGL YFHS+ 
Sbjct: 647 WNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSML 706

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             +GL    +HY+C+VD++ RSG+  +A ++I  MP + D  +W +LL  C+IHGN+++A
Sbjct: 707 SNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVA 766

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           ++AA ++ ++EPE+ A YV ++NIYA+A
Sbjct: 767 EKAAYSILQLEPEDSAAYVLLSNIYANA 794



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/426 (33%), Positives = 226/426 (53%), Gaps = 3/426 (0%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           +Q +      +S + Q C   +AL  GK+ H+ +  + FKP VF++NCL+ MY KC ++ 
Sbjct: 35  YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLE 94

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
            A  +FD M +RD  S+N M+ G+   G +  A+ LFD MP+RD  SW ++ISGY+    
Sbjct: 95  FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGD 154

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             + +D++  M     +V ++ T + VL + S+++    G +IHG  ++ GFD D V  S
Sbjct: 155 HRKVIDVFLQMGRM-GTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGS 213

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL DMY KC  ++ + Q F  M +++ VSW+A+I    Q      G  LF E+ K+G+  
Sbjct: 214 ALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGV 273

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           +  TFA V  +CA  +A  LG Q+HG+  +  +       +A + MY KC N+ +++K+F
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           N +P  +L S+ ++I GYA++    +AL  F LL KSG   D +   G   AC       
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDL 393

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +GLQ  H +  K            I+D+  + G   EA  V  +M +  D   W +++  
Sbjct: 394 EGLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAA 451

Query: 439 CRIHGN 444
              +GN
Sbjct: 452 HEQNGN 457



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 133/306 (43%), Gaps = 34/306 (11%)

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +++ + + K T S +    S  + L  GK+ H  ++ T F     V + L  MY KC  +
Sbjct: 34  SYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDL 93

Query: 211 NEARQIFDKMVDRDVVSWTAMI----GR---------------------------YFQEG 239
             A ++FD M  RD VSW AM+    GR                           Y   G
Sbjct: 94  EFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNG 153

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              +   +F ++ + G   +  TFA VL +C+       G Q+HG   ++G+D      S
Sbjct: 154 DHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGS 213

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ MY+KC  ++ S + F+ MP  + VSW+++IAG  QN      LE F+ + K+G   
Sbjct: 214 ALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGV 273

Query: 360 DHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
               F  V  +C     +  G Q + H++K   G           +D+  +     +A+ 
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIG--TATLDMYMKCNNLSDAQK 331

Query: 419 VISKMP 424
           + + +P
Sbjct: 332 LFNSLP 337


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/480 (35%), Positives = 275/480 (57%), Gaps = 6/480 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D  C  R L  A Q+ + I       +++L+    +     E   +   ++  G++P  
Sbjct: 240 LDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTE 299

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F    +L    +  +I   Q +   + +     +V   N ++  ++K   + +A  LF E
Sbjct: 300 FTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYE 359

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+ D  S+  +++ Y    +  E+L+L++ +Q F       F  +++LS  +    L +
Sbjct: 360 MPEVDGISYNVLVTCYAWNGRVKESLELFKELQ-FTGFDRRNFPFATLLSIAAISLNLDI 418

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++IH   + T   S+ +V ++L DMY KCG   EA +IF  +  +  V WTAMI  Y Q
Sbjct: 419 GRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQ 478

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G  E+G  LF E+ ++ I  +A T+A ++ ACA  A+  LGKQ+H ++   GY    F+
Sbjct: 479 KGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFS 538

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            SALV MY+KCG+++++ ++F  MP  + VSW +LI+ YAQNG  D  L  FE +++SG 
Sbjct: 539 GSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGL 598

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           QPD +  + +L AC+H GLV++GLQYF S+   + L    +HYA  +D+L R GRF EAE
Sbjct: 599 QPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAE 658

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
            ++++MP +PD+ +W+S+L  C IH N +LAK+AA  LF ++   + A YVTM+NIYA+A
Sbjct: 659 KLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAA 718



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/411 (31%), Positives = 217/411 (52%), Gaps = 19/411 (4%)

Query: 27  SIYSSLIQFCRQNRALE-EGKKVHSHLKSS----GFKPGVFISNCLLDMYAKCGNISDAQ 81
           S+ +++I+ C +N        K H H+ +S    GF P  + SN L+  + + G+++ A+
Sbjct: 62  SLMNNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGAR 121

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            LFDEM  +++ S NTMI G+ K G+L +AR LFD M QR   +WT +I GY + NQ  E
Sbjct: 122 KLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFRE 181

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A  L+  M        +  +L+++LS  +    +   +++H ++++ G+DS  VV ++L 
Sbjct: 182 AFGLFIEMGR-HGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLL 240

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D Y K  S+  A Q+F+ + +RD V++ A++  Y +EG   E   LF ++ + G RP  F
Sbjct: 241 DSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEF 300

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TFA +L A       E G+QVHG++ +  +    F A+AL+  YSK   V  + K+F  M
Sbjct: 301 TFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEM 360

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P  D +S+  L+  YA NG   ++LE F+ L  +G    +  F  +L+    +  +D G 
Sbjct: 361 PEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGR 420

Query: 382 QYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVISKMPMK 426
           Q        H  T   D  +       +VD+ A+ G F EA  + S + ++
Sbjct: 421 QI-------HSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQ 464


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/470 (35%), Positives = 267/470 (56%), Gaps = 5/470 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L +A +I   +       ++ LI    QN   +E   +   + +SG K         L  
Sbjct: 329 LFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPS 388

Query: 71  YAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
             K G++   + +   +       DV   + ++  + KGG +E A   F +    D    
Sbjct: 389 VLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVC 448

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMISGYV     +EAL+L+R +   E  V N  T++SVL A +A+  L+LGKE+H  I+
Sbjct: 449 TAMISGYVLNGLNVEALNLFRWLIQ-EGMVPNCLTMASVLPACAALASLKLGKELHCDIL 507

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G ++   V S+++ MY K G ++ A Q F +M  +D V W  MI  + Q G+ E    
Sbjct: 508 KKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAID 567

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++  SG + ++ + +  L+ACA++ A   GK++H ++ R  +   +F AS L+ MYS
Sbjct: 568 LFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYS 627

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  ++ VF+ M   + VSW S+IA Y  +G P + L+ F  ++++G QPDH+ F+ 
Sbjct: 628 KCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLV 687

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +++AC HAGLVD+G+ YF  + E++G+    +H+AC+VDL  R+GR HEA D I  MP  
Sbjct: 688 IMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFT 747

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD   W SLLG CR+HGN++LAK A++ L E++P N   YV ++N++A A
Sbjct: 748 PDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGA 797



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 199/425 (46%), Gaps = 34/425 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +I+ C     +   K VH   +S GF   +FI + L+ +Y            
Sbjct: 175 PDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLY------------ 222

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                              T  G +  A+ LFDE+P RD   W  M++GYV+      AL
Sbjct: 223 -------------------TDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSAL 263

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ M+N      N  +   +LS  +    +R G ++HG ++R+GF+SD  V + +  M
Sbjct: 264 GTFQEMRN-SCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITM 322

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG++ +AR+IFD M   D V+W  +I  Y Q G  +E  ALF  ++ SG++ ++ TF
Sbjct: 323 YSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITF 382

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A  L +     + +  K+VH Y+ R G     +  SALV +Y K G+VE + K F     
Sbjct: 383 ASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTL 442

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+   T++I+GY  NG+  +AL  F  L++ G  P+ +    VL AC     +  G + 
Sbjct: 443 VDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKE- 501

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    K GL       + I  + A+SGR   A     +MP+K D   W  ++     +G
Sbjct: 502 LHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVK-DSVCWNLMIVSFSQNG 560

Query: 444 NLDLA 448
             +LA
Sbjct: 561 KPELA 565



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 214/451 (47%), Gaps = 40/451 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L+  C     +  G ++H  +  SGF+    ++N ++ MY+KCGN+ DA+ +
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKI 335

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M + D  ++N +I+G+ + G  ++A  LF            AM++  V+ +      
Sbjct: 336 FDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFK-----------AMVTSGVKLDS----- 379

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                            T +S L +V     L+  KE+H YI+R G   D  + SAL D+
Sbjct: 380 ----------------ITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDI 423

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G +  A + F +    DV   TAMI  Y   G   E   LF  LI+ G+ PN  T 
Sbjct: 424 YFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTM 483

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A VL ACA  A+ +LGK++H  + + G +      S++ +MY+K G ++ + + F  MP 
Sbjct: 484 ASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPV 543

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D V W  +I  ++QNG P+ A++ F  +  SGT+ D +     L+AC +   +  G + 
Sbjct: 544 KDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKE- 602

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    ++         + ++D+ ++ G+   A  V   M  K ++  W S++     HG
Sbjct: 603 LHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWK-NEVSWNSIIAAYGNHG 661

Query: 444 N----LDLAKRAAEALFEIEPENPATYVTMA 470
                LDL     EA   I+P++    V M+
Sbjct: 662 RPRECLDLFHEMVEA--GIQPDHVTFLVIMS 690



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 193/409 (47%), Gaps = 42/409 (10%)

Query: 4   ILCNQRRLKEALQI-LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           +L   R  +E+L   L  +    P+  +SL++        ++ +++H+ +   G    + 
Sbjct: 61  VLSKSRLFEESLAAQLESMFRAFPNSDASLVK--------QQVRQIHAKVLVCGMNGSLT 112

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + + +L MY  C +  D   LF  +Q      +N +I GF+  G  + A   F       
Sbjct: 113 LGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFF------- 165

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                                  +RM+ +  N   +K+T   V+ A   +  + L K +H
Sbjct: 166 -----------------------FRMLGS--NVAPDKYTFPYVIKACGGLNNVPLCKMVH 200

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
                 GF  D  + S+L  +Y   G I++A+ +FD++  RD + W  M+  Y + G   
Sbjct: 201 ELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFN 260

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F E+  S ++PN+ +F  +L+ CA       G Q+HG + R G++     A+ ++
Sbjct: 261 SALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTII 320

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MYSKCGN+ +++K+F+ MP+ D V+W  LIAGY QNG  D+A+  F+ ++ SG + D I
Sbjct: 321 TMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSI 380

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
            F   L +   +G + K  +  HS   +HG+ +     + +VD+  + G
Sbjct: 381 TFASFLPSVLKSGSL-KYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGG 428



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 6/279 (2%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++IH  ++  G +    + S +  MY  C S  +   +F ++     + W  +I  +   
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  +     F  ++ S + P+ +TF  V+ AC       L K VH     +G+    F  
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIG 215

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           S+L+ +Y+  G + ++K +F+ +P  D + W  ++ GY +NG  + AL  F+ +  S  +
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+ + FV +L+ C   G+V  G+Q  H +  + G          I+ + ++ G   +A  
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQ-LHGLVIRSGFESDPTVANTIITMYSKCGNLFDARK 334

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           +   MP + D   W  L+ G   +G  D     A ALF+
Sbjct: 335 IFDIMP-QTDTVTWNGLIAGYVQNGFTD----EAVALFK 368


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 241/384 (62%), Gaps = 1/384 (0%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           ++C  NT++  + K G+L +A  +F+EM +RD  SW A+I+ + +  + ++ L L+  M 
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                  + FT  SV+ A +  Q L  G EIHG I+++G   D  V SAL DMYGKCG +
Sbjct: 434 R-STMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGML 492

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EA +I  ++ ++  VSW ++I  +  + + E     FS++++ GI P+ +T+A VL+ C
Sbjct: 493 MEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVC 552

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A+ A  ELGKQ+H  + ++      + AS LV MYSKCGN+++S+ +F   P+ D V+W+
Sbjct: 553 ANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWS 612

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++I  YA +G+ +KA+  FE +     +P+H +F+ VL AC H G VDKGL YF  +   
Sbjct: 613 AMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSH 672

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +GL    +HY+C+VDLL RSG+ +EA  +I  MP + D  +W +LL  C++ GN+++A++
Sbjct: 673 YGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEK 732

Query: 451 AAEALFEIEPENPATYVTMANIYA 474
           A  +L +++P++ + YV +AN+YA
Sbjct: 733 AFNSLLQLDPQDSSAYVLLANVYA 756



 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 135/410 (32%), Positives = 235/410 (57%), Gaps = 3/410 (0%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S ++Q C   +AL  GK+VH+ +  +GF P ++++NCLL  Y K   ++ A  +FD M 
Sbjct: 9   FSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMP 68

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +RDV S+NT+I G+   G++  A++LFD MP+RD  SW +++S Y+      ++++++  
Sbjct: 69  QRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M++ +    +  T + +L A S I+   LG ++H   ++ GF++D V  SAL DMY KC 
Sbjct: 129 MRSLKIP-HDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +++A ++F +M +R++V W+A+I  Y Q  R  EG  LF +++K G+  +  T+A V  
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA  +A +LG Q+HG+  +  +   S   +A + MY+KC  + ++ KVFN +P P   S
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQS 307

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           + ++I GYA+     KAL+ F+ L ++    D I   G LTAC+      +G+Q  H + 
Sbjct: 308 YNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQ-LHGLA 366

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            K GL +       I+D+  + G   EA  +  +M  + D   W +++  
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALMEACLIFEEME-RRDAVSWNAIIAA 415



 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 214/440 (48%), Gaps = 41/440 (9%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S S Y+S+ + C    A + G ++H H   S F     I    LDMYAKC      + +F
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKC------ERMF 291

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           D                         A  +F+ +P     S+ A+I GY R +Q ++ALD
Sbjct: 292 D-------------------------AWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALD 326

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           +++ +Q   N   ++ +LS  L+A S I+    G ++HG  ++ G   +  V + + DMY
Sbjct: 327 IFQSLQR-NNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMY 385

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
           GKCG++ EA  IF++M  RD VSW A+I  + Q     +  +LF  +++S + P+ FT+ 
Sbjct: 386 GKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYG 445

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            V+ ACA   A   G ++HG + + G     F  SALV MY KCG +  ++K+   +   
Sbjct: 446 SVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEK 505

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
             VSW S+I+G++     + A  YF  +L+ G  PD+  +  VL  C +   ++ G Q  
Sbjct: 506 TTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIH 565

Query: 385 HSI--KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             I   + H   Y A   + +VD+ ++ G   ++  +  K P K D   W++++     H
Sbjct: 566 AQILKLQLHSDVYIA---STLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSAMICAYAYH 621

Query: 443 GNLDLAKRAAEALFEIEPEN 462
           G   L ++A     E++  N
Sbjct: 622 G---LGEKAINLFEEMQLLN 638



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 137/315 (43%), Gaps = 32/315 (10%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           + K T S +L   S ++ L  GK++H  ++ TGF     V + L   Y K   +N A ++
Sbjct: 4   TKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKV 63

Query: 217 FDKMVDRDVVSWTAMI-------------------------------GRYFQEGRREEGF 245
           FD+M  RDV+SW  +I                                 Y   G   +  
Sbjct: 64  FDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSI 123

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F  +    I  +  TFA +L AC+      LG QVH    ++G++      SALV MY
Sbjct: 124 EIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMY 183

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           SKC  ++++ +VF  MP  +LV W+++IAGY QN    + L+ F+ +LK G       + 
Sbjct: 184 SKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYA 243

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            V  +C        G Q  H    K    Y +      +D+ A+  R  +A  V + +P 
Sbjct: 244 SVFRSCAGLSAFKLGTQ-LHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPN 302

Query: 426 KPDKFLWASLLGGCR 440
            P +   A ++G  R
Sbjct: 303 PPRQSYNAIIVGYAR 317



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 44/245 (17%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L     P    Y++++  C     +E GK++H+ +        V+I++ L+DMY+KCG
Sbjct: 532 QMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCG 591

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           N+ D++ +F++  +RD  +++ MI  +   G  E+A NLF+EM                 
Sbjct: 592 NMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEM----------------- 634

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG---KEIHGY---IMRTG 189
                             N   N     SVL A     C  +G   K +H +   +   G
Sbjct: 635 ---------------QLLNVKPNHTIFISVLRA-----CAHMGYVDKGLHYFQKMLSHYG 674

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALF 248
            D     +S + D+ G+ G +NEA ++ + M  + D V W  ++     +G  E     F
Sbjct: 675 LDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAF 734

Query: 249 SELIK 253
           + L++
Sbjct: 735 NSLLQ 739


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 252/454 (55%), Gaps = 41/454 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y SLI+ C +   ++EG   H      G    VF+   L+D+Y KCG I  A+ +
Sbjct: 121 PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKV 180

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FDEM ER+V S+  MI+G+     L +AR LFDEMP+++  SW A+ISGYV+      A 
Sbjct: 181 FDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSAR 240

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  M +  N VS                                       ++ + D 
Sbjct: 241 KMFDEMPH-RNVVS---------------------------------------FTTMIDG 260

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G +  AR +F++  +RDVV+W+A+I  Y Q G+  E   +F E+    ++P+ F  
Sbjct: 261 YAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIM 320

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENSKKVFNGMP 322
             +++AC+   + EL K V  Y+ +   D + +   +AL+ M +KCG+++ + K+F  MP
Sbjct: 321 VSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMP 380

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           + DL+S+ S++ G + +G   +A+  F  +L  G  PD + F  +LTAC+ AGLVD+G  
Sbjct: 381 KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCY 440

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+K  + +  + DHYAC+VDLL R+GR  EA +++  MP++P    W +LLG C++H
Sbjct: 441 YFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLH 500

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +++L +  A+ LFE+EP+N   YV ++NIYA+A
Sbjct: 501 CDIELGEVVADQLFELEPQNAGNYVLLSNIYAAA 534



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 151/346 (43%), Gaps = 40/346 (11%)

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
           ++R    +   D    +++F+ + S    +S++L A +    L   +++H  I+R G   
Sbjct: 3   FIRRYTALTFPDYLPTLRSFDTTSS----ISTLLKACTTTSTL---EQVHARIIRKGLHQ 55

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D  + S    +     + +    +F+ +     V W   I  Y +        +LF  + 
Sbjct: 56  DHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMK 115

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           +S   P+ FT+  ++ AC+     + G   HG   R G     F  ++L+ +Y KCG + 
Sbjct: 116 RSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEIL 175

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            ++KVF+ M   ++VSWT++IAGYA      +A + F+ +     + + + +  +++   
Sbjct: 176 CARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM----PEKNAVSWNAIISGYV 231

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTA--DHYACIVDLLARSGRFHEA--EDVIS------- 421
             G +    + F  +  ++ +++T   D YA   D+ +    F EA   DV++       
Sbjct: 232 KCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISG 291

Query: 422 ------------------KMPMKPDKFLWASLLGGCRIHGNLDLAK 449
                                +KPD+F+  SL+  C   G+L+LAK
Sbjct: 292 YVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAK 337


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 257/453 (56%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++S +    +  +L+  K++H ++        VF+ + L+D+Y KC ++      
Sbjct: 258 PDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV------ 311

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
             EM ++++C  ++                        D    T MISGYV   +  EAL
Sbjct: 312 --EMAQKNLCQSSSF-----------------------DTVVCTTMISGYVLNGKNKEAL 346

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           + +R +   E       T SS+  A + +  L LGKE+HG I++T  D    V SA+ DM
Sbjct: 347 EAFRWLVQ-ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDM 405

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG ++ A ++F+++ ++D + W +MI    Q GR  E   LF ++   G R +  + 
Sbjct: 406 YAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSI 465

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +G L+ACA+  A   GK++HG M +       +A S+L+ MY+KCGN+  S++VF+ M  
Sbjct: 466 SGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQE 525

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + VSW S+I+ Y  +G   + L  F  +L++G QPDH+ F+G+++AC HAG VD+G++Y
Sbjct: 526 KNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRY 585

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +H + E++G+    +HYAC+ D+  R+GR HEA + I+ MP  PD  +W +LLG C IHG
Sbjct: 586 YHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHG 645

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++LA+ A++ LF+++P N   YV +AN+ A A
Sbjct: 646 NVELAEVASKHLFDLDPLNSGYYVLLANVQAGA 678



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 211/441 (47%), Gaps = 46/441 (10%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +K  L++ H    P+   ++ ++  C     L+ G ++H      G +    ++N LL M
Sbjct: 144 IKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAM 203

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y+KC  +  A+ LFD + + D+ S+N +ISG+ + G + +A +LF             MI
Sbjct: 204 YSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLF-----------RGMI 252

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           S  ++                      +  T +S L  V+ +  L+  KEIHGYI+R   
Sbjct: 253 SAGIK---------------------PDSITFASFLPCVNELLSLKHCKEIHGYIIRHAV 291

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             D  + SAL D+Y KC  +  A++   +    D V  T MI  Y   G+ +E    F  
Sbjct: 292 VLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRW 351

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           L++  ++P + TF+ +  A A  AA  LGK++HG + +   D      SA++ MY+KCG 
Sbjct: 352 LVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           ++ + +VFN +   D + W S+I   +QNG P +A+  F  +   GT+ D +   G L+A
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYA--CIVDLLARSGRFHEAEDVISKMP 424
           C +       L   H  KE HGL       +D YA   ++D+ A+ G  + +  V  +M 
Sbjct: 472 CAN-------LPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ 524

Query: 425 MKPDKFLWASLLGGCRIHGNL 445
            K ++  W S++     HG+L
Sbjct: 525 EK-NEVSWNSIISAYGNHGDL 544



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 205/429 (47%), Gaps = 34/429 (7%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L++L     P    +  +++ C   ++++ GK VH  +   G K  VF+ + L+ +YA+ 
Sbjct: 47  LKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAEN 106

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G++SD                               A+ LFD +PQ+D+  W  M++GYV
Sbjct: 107 GHLSD-------------------------------AQYLFDNIPQKDSVLWNVMLNGYV 135

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +      A+ ++  M++ E    N  T + VLS  ++   L LG ++HG  +  G + D 
Sbjct: 136 KNGDSGNAIKIFLEMRHSEIK-PNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDS 194

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V + L  MY KC  +  AR++FD +   D+VSW  +I  Y Q G   E   LF  +I +
Sbjct: 195 PVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISA 254

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI+P++ TFA  L    +  + +  K++HGY+ R       F  SAL+ +Y KC +VE +
Sbjct: 255 GIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMA 314

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +K        D V  T++I+GY  NG   +ALE F  L++   +P  + F  +  A    
Sbjct: 315 QKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGL 374

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             ++ G +   SI  K  L       + I+D+ A+ GR   A  V +++  K D   W S
Sbjct: 375 AALNLGKELHGSII-KTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEK-DAICWNS 432

Query: 435 LLGGCRIHG 443
           ++  C  +G
Sbjct: 433 MITSCSQNG 441



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + + GSL+ A+NLF  +      +W  MI G+    Q   AL  Y  M     S  +K+T
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVS-PDKYT 60

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
              V+ A   ++ +++GK +H  +   G   D  V S+L  +Y + G +++A+ +FD + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            +D V W  M+  Y + G       +F E+  S I+PN+ TFA VL+ CA  A  +LG Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +HG     G +  S  A+ L+ MYSKC  ++ ++K+F+ +P+ DLVSW  +I+GY QNG+
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             +A   F  ++ +G +PD I F   L  C +  L  K  +  H    +H +       +
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFL-PCVNELLSLKHCKEIHGYIIRHAVVLDVFLKS 299

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL-FEIEP 460
            ++D+  +      A+  + +     D  +  +++ G  ++G     K A EA  + ++ 
Sbjct: 300 ALIDIYFKCRDVEMAQKNLCQ-SSSFDTVVCTTMISGYVLNGK---NKEALEAFRWLVQE 355

Query: 461 ENPATYVTMANIYAS 475
               T VT ++I+ +
Sbjct: 356 RMKPTSVTFSSIFPA 370



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 164/329 (49%), Gaps = 38/329 (11%)

Query: 12  KEALQ----ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL+    ++ +   P+   +SS+        AL  GK++H  +  +       + + +
Sbjct: 343 KEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAI 402

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           LDMYAKCG +  A  +F+ + E+D   +N+MI+  ++ G                     
Sbjct: 403 LDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG--------------------- 441

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                     +P EA++L+R M   E +  +  ++S  LSA + +  L  GKEIHG +++
Sbjct: 442 ----------RPGEAINLFRQM-GMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
               SD    S+L DMY KCG++N +R++FD+M +++ VSW ++I  Y   G  +E  AL
Sbjct: 491 GPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLAL 550

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV-HMYS 306
           F E++++GI+P+  TF G+++AC      + G + +  MT     P      A V  M+ 
Sbjct: 551 FHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFG 610

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
           + G +  + +  N MP  PD   W +L+ 
Sbjct: 611 RAGRLHEAFETINSMPFPPDAGVWGTLLG 639



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 116/236 (49%), Gaps = 2/236 (0%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY + GS+ +A+ +F  +      +W  MI  +   G+       + +++ +G+ P+ +T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  V+ AC    + ++GK VH  +  +G     F  S+L+ +Y++ G++ +++ +F+ +P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           + D V W  ++ GY +NG    A++ F  +  S  +P+ + F  VL+ C    ++D G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             H I    GL   +     ++ + ++      A  +   +P + D   W  ++ G
Sbjct: 181 -LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGIISG 234


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 255/456 (55%), Gaps = 43/456 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN--ISDAQ 81
           P    Y  L++ C    +L   + +H+H++  GF   +F+ N L+D Y++CGN  +  A 
Sbjct: 118 PDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAM 177

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
           +LF  M+ERDV ++N+MI G  + G L+ A  LFDEMP RD  SW  M+ GY +  +   
Sbjct: 178 SLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDT 237

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A +L+  M  + N VS                                       WS + 
Sbjct: 238 AFELFERMP-WRNIVS---------------------------------------WSTMV 257

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
             Y K G ++ AR +FD+   ++VV WT +I  Y ++G   E   L+ ++ ++G+RP+  
Sbjct: 258 CGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDG 317

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
               +L ACA+     LGK++H  M R  +   +   +A + MY+KCG ++ +  VF+GM
Sbjct: 318 FLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGM 377

Query: 322 -PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
             + D+VSW S+I G+A +G  +KALE F  +++ G +PD   FVG+L ACTHAGLV++G
Sbjct: 378 MAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEG 437

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            +YF+S+++ +G+    +HY C++DLL R G   EA  ++  MPM+P+  +  +LL  CR
Sbjct: 438 RKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACR 497

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +H ++DLA+   E LF++EP +P  Y  ++NIYA A
Sbjct: 498 MHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQA 533



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 12/201 (5%)

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H  + +       F A  L+  +S C ++ ++  VFN +P P++  + S+I  +A N 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNS 98

Query: 341 MPDKALEY--FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
              ++L +  F  + K+G  PD+  +  +L AC+    +   ++  H+  EK G      
Sbjct: 99  -SHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPL-VRMIHAHVEKIGFYGDIF 156

Query: 399 HYACIVDLLARSGR--FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
               ++D  +R G      A  +   M  + D   W S++GG    G L    + A  LF
Sbjct: 157 VPNSLIDSYSRCGNAGLDGAMSLFLAMEER-DVVTWNSMIGGLVRCGEL----QGACKLF 211

Query: 457 EIEPE-NPATYVTMANIYASA 476
           +  P+ +  ++ TM + YA A
Sbjct: 212 DEMPDRDMVSWNTMLDGYAKA 232


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/471 (34%), Positives = 277/471 (58%), Gaps = 14/471 (2%)

Query: 12  KEALQILHQISHPSPSIYSSLIQFC--RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ++A ++  +I  P   ++ SL+  C  R + A  E   +   +   G KP  +    L  
Sbjct: 314 EDAYEVFARIDEPD-VVHCSLMISCFDRHDMA-PEAFDIFMQMSDMGVKPNQYTFVGLAI 371

Query: 70  MYAKCGNISDAQTLFDEM------QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           + ++ G+++  +++   +      + + VC  + ++  + K G+++ A   FD M   D 
Sbjct: 372 VASRTGDVNLCRSIHAHIVKSGFSRTKGVC--DAIVGMYVKTGAVQDAILAFDLMQGPDI 429

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SW  ++SG+   N     L +++ +   E  ++NK+T   +L   +++  LR G ++H 
Sbjct: 430 ASWNTLLSGFYSGNNCEHGLRIFKELI-CEGVLANKYTYVGILRCCTSLMDLRFGCQVHA 488

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            ++++GF  D  V   L DMY + G    AR +FD++ +RDV SWT ++  Y +    E+
Sbjct: 489 CVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEK 548

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
               F  +++   RPN  T A  L+ C+D A    G Q+H Y  + G++  S  +SALV 
Sbjct: 549 AIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNS-SVVSSALVD 607

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY KCGN+ +++ +F+     DLV W ++I GYAQ+G   KALE F+ ++  G  PD I 
Sbjct: 608 MYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEIT 667

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           FVGVL+AC+HAGL+D+G +YF  +   +G+T T +HYAC+VD+LA++G+  EAE +I++M
Sbjct: 668 FVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEM 727

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           P+ PD  LW ++LG CR+HGN+++A+RAAE LFE +P++ ++ + ++NIYA
Sbjct: 728 PLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYA 778



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 193/411 (46%), Gaps = 36/411 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++ +Q C  +RAL  GK +H+ L  SG +P  F+ + LL+MY KCG ++D         
Sbjct: 63  YAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLAD--------- 113

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                 AR++FD MP RD  +WTAM+S          AL L+  
Sbjct: 114 ----------------------ARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAE 151

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M   E  V N F L++ L A +    L    ++H   ++     D  V S+L + Y  CG
Sbjct: 152 MSE-EGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCG 210

Query: 209 SINEA-RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
            ++ A R + D  V  DV SW A++  Y ++G   +   +F +L++SG   + +T   VL
Sbjct: 211 EVDVAERALLDSPVRSDV-SWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVL 269

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
             C +    + G+ VHG + + G +      + L+ MYSKC + E++ +VF  +  PD+V
Sbjct: 270 KCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVV 329

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
             + +I+ + ++ M  +A + F  +   G +P+   FVG+    +  G V+   +  H+ 
Sbjct: 330 HCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNL-CRSIHAH 388

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             K G + T      IV +  ++G   +A      M   PD   W +LL G
Sbjct: 389 IVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLM-QGPDIASWNTLLSG 438



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 199/446 (44%), Gaps = 39/446 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           ++++ C +    + G+ VH  +   G +    ++NCL++MY+KC                
Sbjct: 267 TVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCL--------------- 311

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                           S E A  +F  + + D    + MIS + R++   EA D++  M 
Sbjct: 312 ----------------SAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMS 355

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +      N++T   +    S    + L + IH +I+++GF   + V  A+  MY K G++
Sbjct: 356 DM-GVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAV 414

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A   FD M   D+ SW  ++  ++     E G  +F ELI  G+  N +T+ G+L  C
Sbjct: 415 QDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCC 474

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
                   G QVH  + + G+      +  L+ MY + G   N++ VF+ +   D+ SWT
Sbjct: 475 TSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWT 534

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +++ YA+    +KA+E F  +L+   +P+       L+ C+    +  GLQ  HS   K
Sbjct: 535 VVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQ-LHSYTIK 593

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
            G   +    A +VD+  + G   +AE +  +     D   W +++ G   HG+     +
Sbjct: 594 SGWNSSVVSSA-LVDMYVKCGNLADAEMLFDESDTH-DLVEWNTIICGYAQHGH---GYK 648

Query: 451 AAEALFE-IEPENPATYVTMANIYAS 475
           A EA  E I+  N    +T   + ++
Sbjct: 649 ALEAFQEMIDEGNVPDEITFVGVLSA 674



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 7/279 (2%)

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
           ++ L   +A + LR GK +H  ++R+G   D  +  +L +MY KCG + +AR +FD M  
Sbjct: 64  AAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPH 123

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           RDVV+WTAM+      G       LF+E+ + G+ PN F  A  L AC   +      QV
Sbjct: 124 RDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQV 183

Query: 283 HGYMTRIG--YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           H    ++   +DPY   +S+LV  Y  CG V+ +++     P    VSW +L+  YA++G
Sbjct: 184 HAQAVKLEGLFDPY--VSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDG 241

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              K +  F+ L++SG +        VL  C   GL   G Q  H +  K GL       
Sbjct: 242 DYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSG-QAVHGLVIKRGLETDRVLN 300

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
            C++++ ++     +A +V +++  +PD  +  SL+  C
Sbjct: 301 NCLIEMYSKCLSAEDAYEVFARID-EPD-VVHCSLMISC 337



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           R +E   L +E ++S        +A  L  CA   A   GK +H  + R G  P +F   
Sbjct: 48  RDDERLRLRAEELRS--------YAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHD 99

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +L++MY KCG + +++ VF+GMP  D+V+WT++++     G    AL  F  + + G  P
Sbjct: 100 SLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVP 159

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAE 417
           +       L ACT    +    Q      +  GL    D Y  + +V+     G    AE
Sbjct: 160 NGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLF---DPYVSSSLVEAYVSCGEVDVAE 216

Query: 418 DVISKMPMKPDKFLWASLL 436
             +   P++ D   W +LL
Sbjct: 217 RALLDSPVRSD-VSWNALL 234


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 285/497 (57%), Gaps = 34/497 (6%)

Query: 12  KEALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +EAL++  ++   + +I  +++++ C +  AL+ GK++H+ +   G +    +++ L+++
Sbjct: 152 EEALRLFKELKFSADAITLTTVLKACAELEALKRGKQIHAQILIGGVECDSKMNSSLVNV 211

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           YAKCG++  A  + +++ E D  S +T+ISG+   G + ++R LFD    R    W +MI
Sbjct: 212 YAKCGDLRMASYMLEQIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMI 271

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SGY+  N   EAL L+  M+N   +  +  TL++V++A   +  L  GK++H +  + G 
Sbjct: 272 SGYIANNMKFEALVLFNEMRN--ETWEDSRTLAAVINACIGLGFLETGKQMHCHACKFGL 329

Query: 191 DSDEVVWSALSDMYGKCGS-------------------------------INEARQIFDK 219
             D VV S L DMY KCGS                               I++A+++F++
Sbjct: 330 VDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFER 389

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           + ++ ++SW +M   + Q G   E    FS++ K  +  +  + + V++ACA  ++  LG
Sbjct: 390 IENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDLPTDEVSLSSVISACASISSLGLG 449

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +QV    T +G D     +S+L+ +Y KCG+VEN ++VF+ M + D V W S+I+GYA N
Sbjct: 450 EQVFARATIVGLDSDQIVSSSLIDLYCKCGSVENGRRVFDTMVKSDEVPWNSMISGYATN 509

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G   +A++ F+ +  +G +P  I F+ VLTAC + GLV++G   F ++K  HG     +H
Sbjct: 510 GHGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCGLVEEGRLLFEAMKLDHGFVPDKEH 569

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
           ++C+VDLLAR+G   EA D++ +MP   D  +W+S+L GC  +G   + K+ AE + E+E
Sbjct: 570 FSCMVDLLARAGYVEEAIDLVEEMPFDADASMWSSVLRGCVANGYKAMGKKVAEKIIELE 629

Query: 460 PENPATYVTMANIYASA 476
           PEN   YV ++ I+A++
Sbjct: 630 PENSVAYVQLSAIFATS 646



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 228/520 (43%), Gaps = 97/520 (18%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEM 87
           Y  L+Q C         ++ +      GF    V ++N LL +Y++ G +  A+ LFDEM
Sbjct: 9   YVRLLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDEM 68

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            ER+  S+NTMI G+   G    +   FD MP+RD +SW  +ISG+ +  +   A  L+ 
Sbjct: 69  PERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLFD 128

Query: 148 MMQNFE----NSV-----------------------SNKFTLSSVLSAVSAIQCLRLGKE 180
            M   +    NS+                       ++  TL++VL A + ++ L+ GK+
Sbjct: 129 AMPEKDVVTLNSLLHGYILNGYSEEALRLFKELKFSADAITLTTVLKACAELEALKRGKQ 188

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGS------------------------------- 209
           IH  I+  G + D  + S+L ++Y KCG                                
Sbjct: 189 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLISGYANCGR 248

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +NE+R++FD+  +R V+ W +MI  Y     + E   LF+E+ ++    ++ T A V+NA
Sbjct: 249 VNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNEM-RNETWEDSRTLAAVINA 307

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN------------------- 310
           C      E GKQ+H +  + G       AS L+ MYSKCG+                   
Sbjct: 308 CIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILL 367

Query: 311 ------------VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
                       ++++K+VF  +    L+SW S+  G++QNG P + LEYF  + K    
Sbjct: 368 NSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDLP 427

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            D +    V++AC     +  G Q F       GL       + ++DL  + G       
Sbjct: 428 TDEVSLSSVISACASISSLGLGEQVFAR-ATIVGLDSDQIVSSSLIDLYCKCGSVENGRR 486

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGN----LDLAKRAAEA 454
           V   M +K D+  W S++ G   +G+    +DL K+ + A
Sbjct: 487 VFDTM-VKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIA 525


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 258/451 (57%), Gaps = 35/451 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S Y+SL+Q C   +A+E GK++H+ +   G      ++  L+++Y  C ++++A  LF  
Sbjct: 2   SYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLF-- 59

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE-ALDL 145
                                        D + +R+ F W  MI GY  +N P E A+ L
Sbjct: 60  -----------------------------DRISKRNLFLWNVMIRGYA-WNGPYELAISL 89

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           Y  M+++   V +KFT   VL A SA+  +  GK+IH  ++R+G +SD  V +AL DMY 
Sbjct: 90  YYQMRDY-GLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYA 148

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KCG +  ARQ+FDK+ +RDVV W +M+  Y Q G+ +E  AL   +  +G++P   TF  
Sbjct: 149 KCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVI 208

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
            + A AD+     GK++HGY  R G++      +AL+ MY+K G+V  ++ +F  +    
Sbjct: 209 SIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKR 268

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++I GYA +G  ++AL+ F+  +K    PDHI FVGVL AC+H GL+++G  +F 
Sbjct: 269 VVSWNAMITGYAMHGHANEALDLFK-EMKGKVLPDHITFVGVLAACSHGGLLNEGKMHFR 327

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           S+     +  T  HY C++DLL   GR  EA  +I +M ++PD  +W +LL  C+IHGN+
Sbjct: 328 SMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNV 387

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++ + A E L E+EP++   YV ++N+YA A
Sbjct: 388 EMGELALEKLVELEPDDGGNYVILSNMYAQA 418



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 161/330 (48%), Gaps = 40/330 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +++ C    A+EEGKK+H  +  SG +  VF+   L+DMYAKCG +  A+ +
Sbjct: 100 PDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQV 159

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD++ ERDV  +N+M++ +++ G                               QP E+L
Sbjct: 160 FDKIDERDVVCWNSMLATYSQNG-------------------------------QPDESL 188

Query: 144 DLYRMMQ-NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            L R+M  N        F +S   SA + +  L  GKE+HGY  R GF+S++ V +AL D
Sbjct: 189 ALCRVMAFNGLKPTEGTFVISIAASADNGL--LPQGKELHGYSWRHGFESNDKVKTALMD 246

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY K GS+N AR +F+ + ++ VVSW AMI  Y   G   E   LF E+ K  + P+  T
Sbjct: 247 MYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHIT 305

Query: 263 FAGVLNACADHAAEELGK-QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F GVL AC+       GK      ++     P     + ++ +   CG +E + K+   M
Sbjct: 306 FVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEM 365

Query: 322 -PRPDLVSWTSLIAGYAQNG---MPDKALE 347
              PD   W +L+     +G   M + ALE
Sbjct: 366 RVEPDAGVWGALLHSCKIHGNVEMGELALE 395


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 267/469 (56%), Gaps = 41/469 (8%)

Query: 13  EALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA+++  +++     P     +S++  C    ALE+G++VH++   +  +   F+ N L+
Sbjct: 222 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLI 281

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAK   + DA                               + +FD M +++  S+ A
Sbjct: 282 DMYAKSNLLXDA-------------------------------KKVFDVMAEQNVISYNA 310

Query: 129 MISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           MI GY    +  EAL+L+  M+   F  S+    T  S+L   +++  L L K+IHG I+
Sbjct: 311 MIEGYSSQEKLSEALELFHEMRVRLFPPSL---LTFVSLLGVSASLFALELSKQIHGLII 367

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G   D    SAL D+Y KC  + +AR +F++M ++D+V W AM   Y Q    EE   
Sbjct: 368 KXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 427

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           L+S L  S  +PN FTFA ++ A ++ A+   G+Q H  + ++G D   F  +ALV MY+
Sbjct: 428 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYA 487

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E ++K+FN     D+V W S+I+ +AQ+G  ++AL  F  ++K G QP+++ FV 
Sbjct: 488 KCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVA 547

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+HAG V+ GL +F+S+    G+    +HYAC+V LL RSG+  EA++ I KMP++
Sbjct: 548 VLSACSHAGXVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIE 606

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           P   +W SLL  CRI GN++L K AAE     +P++  +Y+ ++NI+AS
Sbjct: 607 PAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFAS 655



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 209/420 (49%), Gaps = 34/420 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HP+  + +S+I+ C Q   +E+G ++H  +  SGF   V++   L+D Y+K GBI  A+ 
Sbjct: 34  HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARL 93

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD++ E+   ++ T+I+G+TK G    +  LF +M +                      
Sbjct: 94  VFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRET--------------------- 132

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                      N V +++ +SSVLSA S ++ L  GK+IH Y++R G + D  V + L D
Sbjct: 133 -----------NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLID 181

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            Y KC  +   R++FD+MV ++++SWT MI  Y Q     E   LF E+ + G +P+ F 
Sbjct: 182 FYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFA 241

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL +C    A E G+QVH Y  +   +   F  + L+ MY+K   + ++KKVF+ M 
Sbjct: 242 CTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMA 301

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +++S+ ++I GY+      +ALE F  +      P  + FV +L        ++   Q
Sbjct: 302 EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQ 361

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H +  K G++      + ++D+ ++     +A  V  +M  K D  +W ++  G   H
Sbjct: 362 -IHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQH 419



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 157/283 (55%), Gaps = 1/283 (0%)

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           EAL ++  +Q       N+F L+SV+ A + +  +  G ++HG+++R+GFD D  V ++L
Sbjct: 19  EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 78

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            D Y K G I  AR +FD+++++  V+WT +I  Y + GR      LF+++ ++ + P+ 
Sbjct: 79  IDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDR 138

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +  + VL+AC+     E GKQ+H Y+ R G +      + L+  Y+KC  V+  +K+F+ 
Sbjct: 139 YVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQ 198

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   +++SWT++I+GY QN    +A++ F  + + G +PD      VLT+C     +++G
Sbjct: 199 MVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQG 258

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            Q  H+   K  L         ++D+ A+S    +A+ V   M
Sbjct: 259 RQ-VHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVM 300


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 254/470 (54%), Gaps = 35/470 (7%)

Query: 6   CNQRRLKEALQILHQISHP-SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           C++R+    L I+  +S   +P+  + ++       A      +H H    GF+  +F+S
Sbjct: 5   CDRRQKSHFLFIIVALSSTIAPA--ALVVALTTNINASTISSSIHVHALKLGFESYLFVS 62

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+ MYA CG +                       GF        A+ +FD M  RD  
Sbjct: 63  NALIHMYAMCGQL-----------------------GF--------AQKMFDGMLDRDLV 91

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW  +I GY +YN+  E L L+  M    N  ++  T+  ++ A S +        +  Y
Sbjct: 92  SWNTLICGYSQYNKYKEVLRLFDAMTA-ANIKADAVTMVKIILACSHLGDWEFADSMVKY 150

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I     + D  + + L DMYG+ G++  AR++FD M  RDV+SWT+MI  Y Q  +  + 
Sbjct: 151 IKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDA 210

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF E++ + ++P+  T A VL+ACA     ++G  VH Y+ R G     +  ++L+ M
Sbjct: 211 VKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDM 270

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCG VE + +VF+ M   D VSWTS+I+G A NG  + AL+ F  +L+ G QP H  F
Sbjct: 271 YCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTF 330

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VG+L AC HAGLV+KGL+YF S++  HGL     HY C+VDLL+RSG   +A + I KMP
Sbjct: 331 VGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMP 390

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           + PD  +W  LL  C++HGN+ LA+ A + L E++P +   YV ++N YA
Sbjct: 391 IVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYA 440


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 240/381 (62%), Gaps = 3/381 (0%)

Query: 98  MISGFTKGGSLEQARNLFDE--MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           +IS + KG  ++ AR +F+E    ++    + A++SGYV  ++  EA+ L+R M N E  
Sbjct: 90  LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQM-NEEGV 148

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N  TL  ++ A  +   L LG  +H   ++ GFDSD  V +    MY KCGS+N A++
Sbjct: 149 PVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 208

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD+M  + ++SW AM+  Y Q G       L+  +  +G+ P+  T  GVL++CA+  A
Sbjct: 209 LFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGA 268

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
           + +G +V   +   G+    F  +AL++MY++CGN+  ++ VF+GMP   LVSWT++I G
Sbjct: 269 QSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGG 328

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  +G  + A++ F+ +++SG +PD   FV VL+AC+HAGL D+GL+YF  +K  + L  
Sbjct: 329 YGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEP 388

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HY+C+VDLL R+GR  EA+ +I  MP+KPD  +W +LLG C+IH N++LA+ A E +
Sbjct: 389 GPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV 448

Query: 456 FEIEPENPATYVTMANIYASA 476
            E+EPEN   YV ++NIY++A
Sbjct: 449 IELEPENIGYYVLLSNIYSNA 469



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 7/343 (2%)

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W   +    +  Q ++AL LY  M    +   N FT    L + +A+    LG + HG I
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDR-PNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREE 243
            + G   +  V + L  MY K   ++ AR++F++     +  V + A++  Y    +  E
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF ++ + G+  N+ T  G++ AC      ELG  +H    + G+D      +  + 
Sbjct: 136 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFIT 195

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY KCG+V  ++K+F+ MP   L+SW ++++GYAQNG+    LE +  +  +G  PD + 
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 255

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            VGVL++C + G    G +    I +  G T        ++++ AR G   +A+ V   M
Sbjct: 256 LVGVLSSCANLGAQSVGHEVEFKI-QASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 314

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPA 464
           P +     W +++GG  +HG+ ++A +  + +    IEP+  A
Sbjct: 315 PER-TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTA 356



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 176/366 (48%), Gaps = 40/366 (10%)

Query: 10  RLKEALQILHQISHPSPSIYS----SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           +  EA+ +  Q++     + S     LI  C     LE G  +H      GF   V + N
Sbjct: 132 KCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVN 191

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
           C + MY KCG+++ AQ LFDEM  + + S+N M+SG+ + G    A N+           
Sbjct: 192 CFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNG---LATNV----------- 237

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                            L+LYR M +      +  TL  VLS+ + +    +G E+   I
Sbjct: 238 -----------------LELYRNM-DMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKI 279

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
             +GF S+  + +AL +MY +CG++ +A+ +FD M +R +VSWTA+IG Y   G  E   
Sbjct: 280 QASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAV 339

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHM 304
            LF E+I+SGI P+   F  VL+AC+     + G +    M R    +P     S +V +
Sbjct: 340 QLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDL 399

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
             + G ++ ++ +   MP +PD   W +L+     +   + A   FE +++   +P++I 
Sbjct: 400 LGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIG 457

Query: 364 FVGVLT 369
           +  +L+
Sbjct: 458 YYVLLS 463


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 273/470 (58%), Gaps = 6/470 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++ A  +  ++S P    ++S+I  C  N     G ++   +   G +  +     +L  
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305

Query: 71  YAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
            A  GN+S  + L           +V   NT++  ++K G+L  A  +F +M      SW
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T++I+ YVR     +A+ L+  MQ+ +    + +T++S++ A +    L  G+++H Y++
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQS-KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 424

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G  S+  V +AL +MY KCGS+ EAR +F K+  +D+VSW  MIG Y Q     E   
Sbjct: 425 KNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALE 484

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++ K   +P+  T A VL ACA  AA + G+++HG++ R GY      A ALV MY+
Sbjct: 485 LFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYA 543

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  ++ +F+ +P+ DL+SWT +IAGY  +G  ++A+  F  +  +G +PD   F  
Sbjct: 544 KCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSA 603

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC+H+GL+++G ++F+S++ + G+    +HYAC+VDLLAR G   +A   I  MP+K
Sbjct: 604 ILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK 663

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W  LL GCRIH ++ LA++ AE +FE+EP+N   YV +AN+YA A
Sbjct: 664 PDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEA 713



 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/517 (31%), Positives = 260/517 (50%), Gaps = 82/517 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGF-- 57
           I+  C    L+ A+++L +       +  Y S++Q C + ++LE+GK+VHS + S+G   
Sbjct: 68  INKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISV 127

Query: 58  -----------------------------KPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
                                           VF+ N L+  YAK GN  ++ +LF +MQ
Sbjct: 128 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 187

Query: 89  ERDVCS---------------------------------------YNTMISGFTKGGSLE 109
           +  V                                          N++I+ + K G +E
Sbjct: 188 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE 247

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
            A NLFDE+ + D  SW +MI+G V        L+++  M      V +  TL SVL A 
Sbjct: 248 SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEV-DLTTLVSVLVAC 306

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWS-ALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
           + I  L LG+ +HG+ ++  F S+EVV+S  L DMY KCG++N A ++F KM D  +VSW
Sbjct: 307 ANIGNLSLGRALHGFGVKACF-SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T++I  Y +EG   +   LF E+   G+RP+ +T   +++ACA  ++ + G+ VH Y+ +
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 425

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G        +AL++MY+KCG+VE ++ VF+ +P  D+VSW ++I GY+QN +P++ALE 
Sbjct: 426 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALEL 485

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD-HYAC-IVDL 406
           F L ++   +PD I    VL AC     +DKG +    I  +    Y +D H AC +VD+
Sbjct: 486 F-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRR---GYFSDLHVACALVDM 541

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            A+ G    A+ +   +P K D   W  ++ G  +HG
Sbjct: 542 YAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 577



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 148/308 (48%), Gaps = 4/308 (1%)

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS---VLSAVSAIQCL 175
           P   N + +   +   + N+  E  DL   ++    S S +  L+S   VL   +  + L
Sbjct: 51  PSFTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSL 110

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
             GK +H  I+  G   DE + + L  MY  CG + + R+IFDK+++  V  W  ++  Y
Sbjct: 111 EDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 170

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            + G   E  +LF ++ K G+  N +TF  VL   A     +  K+VHGY+ ++G+   +
Sbjct: 171 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 230

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              ++L+  Y K G VE++  +F+ +  PD+VSW S+I G   NG     LE F  +L  
Sbjct: 231 AVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLIL 290

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G + D    V VL AC + G +  G +  H    K   +        ++D+ ++ G  + 
Sbjct: 291 GVEVDLTTLVSVLVACANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNG 349

Query: 416 AEDVISKM 423
           A +V  KM
Sbjct: 350 ATEVFVKM 357


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 256/453 (56%), Gaps = 63/453 (13%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y   I  C + RAL EG++VH+ + ++G++P ++++  L+ MYA+CG             
Sbjct: 38  YDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCG------------- 84

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                             +LE ARN+ D MP+R+  SWTAMISGY +  +P +A +L+ M
Sbjct: 85  ------------------ALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIM 126

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLG----KEIHGYIMRTGFDSDEVVWSALSDMY 204
           M                         LR G    K++H + ++T F+    V S+L DMY
Sbjct: 127 M-------------------------LRAGIHQVKQVHAFAVKTNFELHMFVGSSLLDMY 161

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K  +I EAR++FD +  RDVVS+TA++  Y Q G  EE   LF  L   G++ N  TF 
Sbjct: 162 AKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFT 221

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            +LNA +  ++ + GKQVHG + R     +    ++L+ MYSKCG +  S++VF+ MP  
Sbjct: 222 ALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPER 281

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
            +VSW +++ GY ++G+  + ++ F  +     +PD +  + VL+  +H GLVD+GL  F
Sbjct: 282 SVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVLSGYSHGGLVDEGLDMF 340

Query: 385 -HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H +KE+  L  T +HY C++DLL RSG+  +A ++I KMP +P + +W SLLG CR+H 
Sbjct: 341 DHIVKEQSTLLNT-EHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIWGSLLGACRVHT 399

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N+ + +  A+ L +IEPEN   YV ++NIYA+A
Sbjct: 400 NVHVGEFVAQKLLDIEPENAGNYVILSNIYAAA 432


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 283/510 (55%), Gaps = 44/510 (8%)

Query: 4   ILCNQ---RRLKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKP 59
           ++CN    RR+ EA ++ +Q+  P  S+Y+ +I  + R NR ++                
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
              IS C+     +CG+++ A  LFDEM ER V S+  M++G  + G ++QA  LF +MP
Sbjct: 101 NSMISGCV-----ECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMP 155

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMM----------------QN---------FEN 154
            +D  +W +M+ GY+++ +  +AL L++ M                QN         F+N
Sbjct: 156 VKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKN 215

Query: 155 -------SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
                  S S  FT   V++A +      +G ++HG I++ GF  +E V ++L   Y  C
Sbjct: 216 MLRCCIKSTSRPFT--CVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANC 273

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
             I ++R++FD+ V   V  WTA++  Y    + E+  ++FS ++++ I PN  TFA  L
Sbjct: 274 KRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGL 333

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           N+C+     + GK++HG   ++G +  +F  ++LV MYS  GNV ++  VF  + +  +V
Sbjct: 334 NSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIV 393

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW S+I G AQ+G    A   F  +++   +PD I F G+L+AC+H G ++KG + F+ +
Sbjct: 394 SWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYM 453

Query: 388 KEK-HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
               + +     HY C+VD+L R G+  EAE++I +M +KP++ +W +LL  CR+H ++D
Sbjct: 454 SSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVD 513

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
             ++AA A+F ++ ++ A YV ++NIYASA
Sbjct: 514 RGEKAAAAIFNLDSKSSAAYVLLSNIYASA 543


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 159/418 (38%), Positives = 244/418 (58%), Gaps = 40/418 (9%)

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +P     N +L  +     + DA+  FD M  +DV S+NTMIS   + G + +AR LF  
Sbjct: 101 QPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSA 160

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+++  SW+AM+SGYV        LD                         +A++C   
Sbjct: 161 MPEKNCVSWSAMVSGYVACGD----LD-------------------------AAVECF-- 189

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
               +   MR+      + W+A+   Y K G +  A ++F +M  R +V+W AMI  Y +
Sbjct: 190 ----YAAPMRS-----VITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVE 240

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            GR E+G  LF  ++++G++PNA +   VL  C++ +A +LGKQVH  + +      + A
Sbjct: 241 NGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTA 300

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++LV MYSKCG+++++ ++F  +PR D+V W ++I+GYAQ+G   KAL  F+ + K G 
Sbjct: 301 GTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGL 360

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD I FV VL AC HAGLVD G+QYF++++   G+    +HYAC+VDLL R+G+  EA 
Sbjct: 361 KPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAV 420

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           D+I  MP KP   ++ +LLG CRIH NL+LA+ AA+ L E++P     YV +AN+YA+
Sbjct: 421 DLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAA 478



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 33/198 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    +S++  C    AL+ GK+VH  +              L+ MY+KCG++ DA  L
Sbjct: 261 PNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWEL 320

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F ++  +DV  +N MISG+ + G+ ++A  LFDEM +                       
Sbjct: 321 FIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKK----------------------- 357

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSD 202
                    E    +  T  +VL A +    + LG +    + R  G ++    ++ + D
Sbjct: 358 ---------EGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVD 408

Query: 203 MYGKCGSINEARQIFDKM 220
           + G+ G ++EA  +   M
Sbjct: 409 LLGRAGKLSEAVDLIKSM 426


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 240/381 (62%), Gaps = 3/381 (0%)

Query: 98  MISGFTKGGSLEQARNLFDE--MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           +IS + KG  ++ AR +F+E    ++    + A++SGYV  ++  +A+ L+R M N E  
Sbjct: 81  LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQM-NEEGV 139

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N  TL  ++ A  +   L LG  +H   ++ GFDSD  V +    MY KCGS+N A++
Sbjct: 140 PVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 199

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD+M  + ++SW AM+  Y Q G       L+  +  +G+ P+  T  GVL++CA+  A
Sbjct: 200 LFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGA 259

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
           + +G +V   M   G+    F  +AL++MY++CGN+  ++ VF+GMP   LVSWT++I G
Sbjct: 260 QSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGG 319

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  +G  + A++ F+ +++SG +PD   FV VL+AC+HAGL D+GL+YF  +K  + L  
Sbjct: 320 YGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEP 379

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HY+C+VDLL R+GR  EA+ +I  MP+KPD  +W +LLG C+IH N++LA+ A E +
Sbjct: 380 GPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV 439

Query: 456 FEIEPENPATYVTMANIYASA 476
            E+EPEN   YV ++NIY++A
Sbjct: 440 IELEPENIGYYVLLSNIYSNA 460



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 169/346 (48%), Gaps = 13/346 (3%)

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W   +    +  Q ++AL LY  M    +   N FT    L + +A+    LG + HG I
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDR-PNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREE 243
            + G   +  V + L  MY K   ++ AR++F++     +  V + A++  Y    +  +
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF ++ + G+  N+ T  G++ AC      ELG  +H    + G+D      +  + 
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFIT 186

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY KCG+V  ++K+F+ MP   L+SW ++++GYAQNG+    LE +  +  +G  PD + 
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 246

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEK---HGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            VGVL++C + G    G    H ++ K    G T        ++++ AR G   +A+ V 
Sbjct: 247 LVGVLSSCANLGAQSVG----HEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVF 302

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPA 464
             MP +     W +++GG  +HG+ ++A +  + +    IEP+  A
Sbjct: 303 DGMPER-TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTA 347



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 166/340 (48%), Gaps = 36/340 (10%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           LI  C     LE G  +H      GF   V + NC + MY KCG+++ AQ LFDEM  + 
Sbjct: 149 LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG 208

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           + S+N M+SG+ + G    A N+                            L+LYR M +
Sbjct: 209 LISWNAMVSGYAQNG---LATNV----------------------------LELYRNM-D 236

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                 +  TL  VLS+ + +    +G E+   +  +GF S+  + +AL +MY +CG++ 
Sbjct: 237 MNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLT 296

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A+ +FD M +R +VSWTA+IG Y   G  E    LF E+I+SGI P+   F  VL+AC+
Sbjct: 297 KAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS 356

Query: 272 DHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSW 329
                + G +    M R    +P     S +V +  + G ++ ++ +   MP +PD   W
Sbjct: 357 HAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVW 416

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            +L+     +   + A   FE +++   +P++I +  +L+
Sbjct: 417 GALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLS 454



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 40/216 (18%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HP P     ++  C    A   G +V   +++SGF    F++N L++MYA+CGN++ AQ 
Sbjct: 241 HPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQA 300

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQ 138
           +FD M ER + S+  +I G+   G  E A  LF EM +     D  ++  ++S       
Sbjct: 301 VFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGL 360

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             + L+ ++MM+                                 Y +  G +     +S
Sbjct: 361 TDQGLEYFKMMK-------------------------------RNYQLEPGPEH----YS 385

Query: 199 ALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            + D+ G+ G + EA+ + + M +  D   W A++G
Sbjct: 386 CMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLG 421


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 273/470 (58%), Gaps = 6/470 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++ A  +  ++S P    ++S+I  C  N     G ++   +   G +  +     +L  
Sbjct: 521 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580

Query: 71  YAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +A  GN+S  + L           +V   NT++  ++K G+L  A  +F +M      SW
Sbjct: 581 WANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 640

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T+ I+ YVR     +A+ L+  MQ+ +    + +T++S++ A +    L  G+++H Y++
Sbjct: 641 TSTIAAYVREGLYSDAIGLFDEMQS-KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 699

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G  S+  V +AL +MY KCGS+ EAR +F K+  +D+VSW  MIG Y Q     E   
Sbjct: 700 KNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALE 759

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++ K   +P+  T A VL ACA  AA + G+++HG++ R GY      A ALV MY+
Sbjct: 760 LFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYA 818

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  ++ +F+ +P+ DL+SWT +IAGY  +G  ++A+  F  +  +G +PD   F  
Sbjct: 819 KCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSV 878

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC+H+GL+++G ++F+S++ + G+    +HYAC+VDLLAR G   +A   I  MP+K
Sbjct: 879 ILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK 938

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W  LL GCRIH ++ LA++ AE +FE+EP+N   YV +AN+YA A
Sbjct: 939 PDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEA 988



 Score =  244 bits (623), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 162/517 (31%), Positives = 259/517 (50%), Gaps = 82/517 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGF-- 57
           I+  C    L+ A+++L +       +  Y S++Q C + ++LE+GK+VHS + S+G   
Sbjct: 343 INKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISI 402

Query: 58  -----------------------------KPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
                                           VF+ N L+  YAK GN  ++ +LF +MQ
Sbjct: 403 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 462

Query: 89  ERDVCS---------------------------------------YNTMISGFTKGGSLE 109
           +  V                                          N++I+ + K G +E
Sbjct: 463 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE 522

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
            A NLFDE+ + D  SW +MI+G V        L+++  M      V +  TL SVL A 
Sbjct: 523 SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEV-DLTTLVSVLVAW 581

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWS-ALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
           + I  L LG+ +HG+ ++  F S+EVV+S  L DMY KCG++N A ++F KM D  +VSW
Sbjct: 582 ANIGNLSLGRALHGFGVKACF-SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 640

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T+ I  Y +EG   +   LF E+   G+RP+ +T   +++ACA  ++ + G+ VH Y+ +
Sbjct: 641 TSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 700

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G        +AL++MY+KCG+VE ++ VF+ +P  D+VSW ++I GY+QN +P++ALE 
Sbjct: 701 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALEL 760

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD-HYAC-IVDL 406
           F L ++   +PD I    VL AC     +DKG +    I  +    Y +D H AC +VD+
Sbjct: 761 F-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRR---GYFSDLHVACALVDM 816

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            A+ G    A+ +   +P K D   W  ++ G  +HG
Sbjct: 817 YAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 852



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 147/308 (47%), Gaps = 4/308 (1%)

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS---VLSAVSAIQCL 175
           P   N + +   +   + N+  E  DL   ++    S S +  L+S   VL   +  + L
Sbjct: 326 PSFTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSL 385

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
             GK +H  I+  G   DE + + L  MY  CG + + R+IFDK+++  V  W  ++  Y
Sbjct: 386 EDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 445

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            + G   E  +LF ++ K G+  N +TF  VL   A     +  K+VHGY+ ++G+   +
Sbjct: 446 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 505

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              ++L+  Y K G VE++  +F+ +  PD+VSW S+I G   NG     LE F  +L  
Sbjct: 506 AVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLIL 565

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G + D    V VL A  + G +  G +  H    K   +        ++D+ ++ G  + 
Sbjct: 566 GVEVDLTTLVSVLVAWANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNG 624

Query: 416 AEDVISKM 423
           A +V  KM
Sbjct: 625 ATEVFVKM 632


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 258/458 (56%), Gaps = 6/458 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+++ C +   +  G+ VH  ++ S +K  +++ N L+ MY + GN+  A+ L
Sbjct: 143 PDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFGNVGIARRL 202

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQP 139
           FD M ERD  S+N +I+ +   G   +A  LFD+M     +    +W  +  GY+     
Sbjct: 203 FDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNIISGGYLHTGNY 262

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           + AL L   M+NF  S+ +   +   L A S I  +RLGKEIHG  +   +D  + V + 
Sbjct: 263 VGALGLISRMRNFPTSL-DPVAMIIGLKACSLIGAIRLGKEIHGLAIHRSYDGIDNVRNT 321

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY KC  +  A  +F K  +  + +W ++I  Y Q  + EE   L  E++ +G +PN
Sbjct: 322 LITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSEEASYLLREMLLAGFQPN 381

Query: 260 AFTFAGVLNACADHAAEELGKQVHGY-MTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
             T A +L  CA  A  + GK+ H Y + R  +  Y+   ++LV +Y+K G +  +K+V 
Sbjct: 382 FITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVS 441

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           N M   D V++TSLI GY   G    AL  F+ +++SG +PD +  V VL+AC+H+ LV 
Sbjct: 442 NLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVTMVAVLSACSHSKLVH 501

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G + F  ++ K+G+     H++C+VDL  R+G   +A+D+I +MP +P    WA+LL  
Sbjct: 502 EGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHRMPYEPSGATWATLLNA 561

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C IHGN ++ K AAE L E++PENP  YV +AN+YA+A
Sbjct: 562 CHIHGNTEIGKWAAEKLLEMKPENPGYYVLIANMYATA 599



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 202/481 (41%), Gaps = 79/481 (16%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +SL+  C    A   G ++H+H  SSG +    +   L+  Y+      +AQ++ +    
Sbjct: 48  ASLLSACVDVLAFVPGLQIHAHCVSSGVEYHSALVPKLVTFYSAFNLHREAQSINENSDI 107

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                +N +I+ + K         LF+E+      ++  M+S  +R              
Sbjct: 108 LHPLPWNVLIASYAK-------NELFEEVVA----AYKRMVSKGIR-------------- 142

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   + FT  SVL A      +  G+ +HG I  + +     V +AL  MY + G+
Sbjct: 143 -------PDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFGN 195

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV--- 266
           +  AR++FD M +RD VSW A+I  Y   G   E F LF ++  SG+  +  T+  +   
Sbjct: 196 VGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNIISGG 255

Query: 267 --------------------------------LNACADHAAEELGKQVHGYMTRIGYDPY 294
                                           L AC+   A  LGK++HG      YD  
Sbjct: 256 YLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHRSYDGI 315

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
               + L+ MYSKC ++ N+  VF       L +W S+I+GYAQ    ++A      +L 
Sbjct: 316 DNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSEEASYLLREMLL 375

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           +G QP+ I    +L  C     +  G ++   I  +         +  +VD+ A+SG+  
Sbjct: 376 AGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIV 435

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPENPATYVT 468
            A+ V S +  + D+  + SL+ G   +GN     R A ALF+      I+P+ P T V 
Sbjct: 436 AAKQV-SNLMSEIDEVTYTSLIDG---YGNQG-EGRVALALFDEMIRSGIKPD-PVTMVA 489

Query: 469 M 469
           +
Sbjct: 490 V 490



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 3/230 (1%)

Query: 149 MQNFENSVSNKFTL---SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           +Q+  ++VS    L   +S+LSA   +     G +IH + + +G +    +   L   Y 
Sbjct: 31  LQSSPSAVSGDVVLHSAASLLSACVDVLAFVPGLQIHAHCVSSGVEYHSALVPKLVTFYS 90

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
                 EA+ I +       + W  +I  Y +    EE  A +  ++  GIRP+AFT+  
Sbjct: 91  AFNLHREAQSINENSDILHPLPWNVLIASYAKNELFEEVVAAYKRMVSKGIRPDAFTYPS 150

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL AC +      G+ VHG +    Y    +  +AL+ MY + GNV  ++++F+ M   D
Sbjct: 151 VLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFGNVGIARRLFDHMSERD 210

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            VSW ++I  YA  GM  +A E F+ +  SG +   I +  +     H G
Sbjct: 211 AVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNIISGGYLHTG 260


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 254/449 (56%), Gaps = 32/449 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S    +++ C + + L +GK  H+ +   G K  +  SN L++MY+KC            
Sbjct: 65  SFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKC------------ 112

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                              GS++ AR +FDEMP R   SW  MI    +  +  EALDL 
Sbjct: 113 -------------------GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL 153

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             MQ  E +  ++FT+SSVL A +A   L   + +H + ++   D +  V +AL D+Y K
Sbjct: 154 LQMQR-EGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAK 212

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG + +A  +F+ M DR VV+W++M   Y Q    E+  ALF +  ++G++ + F  + V
Sbjct: 213 CGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSV 272

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           + ACA  AA   GKQV+  +++ G+    F AS+L+ MY+KCG +E S KVF  + + ++
Sbjct: 273 ICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNV 332

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V W ++I+G +++    + +  FE + + G  P+ + FV VL+AC H GLV KG +YF  
Sbjct: 333 VLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDL 392

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + ++H L     HY+C+VD L+R+G+  EA D+ISK+P      +W SLL  CR HGNL+
Sbjct: 393 MTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLE 452

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYAS 475
           LA+ AA+ LF+IEP N   Y+ ++N+YA+
Sbjct: 453 LAEVAAKKLFDIEPHNSGNYLLLSNMYAA 481


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 163/467 (34%), Positives = 271/467 (58%), Gaps = 7/467 (1%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVFISNCLLDMYAKC 74
           +++H+   P    Y S+++ C +   L+ G++VH  + ++ G +  +++ N L+ MY K 
Sbjct: 132 EMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKF 191

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMI 130
           G +  A+ LF++M ERD  S+N +IS +   G  ++A  LF+EM     + +  +W  + 
Sbjct: 192 GELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIA 251

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
            G V+      AL+L   M+  +  + +   +   L A S I  ++LG  IH   +R+ F
Sbjct: 252 GGCVQTRNFKGALELLSQMRRCDIDL-DPVAMIIGLGACSHIGAIKLGTVIHASAIRSCF 310

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
           D  + V +AL  MY +C  +  A  +F  +  + + +W +M+  Y    R EE   LF E
Sbjct: 311 DGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFRE 370

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY-MTRIGYDPYSFAASALVHMYSKCG 309
           ++ SGI PN  T A +L  CA  A  + GK+ H Y M R G++ Y    ++LV MY++ G
Sbjct: 371 MLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSG 430

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            V ++K+VF+ + R D V++TSLIAGY   G    AL+ F+ ++K   +PD +  V VL+
Sbjct: 431 KVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLS 490

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H+GLV +G   F  +   +G+    +H++C+VDL  R+G  ++A+ VI+ MP +P  
Sbjct: 491 ACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTT 550

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +WA+L+G CRIHGN ++ + AAE L E++PENP  YV +AN++A+A
Sbjct: 551 AMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAA 597



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 214/497 (43%), Gaps = 83/497 (16%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           ILH IS        SL+  C   ++L +GK++H+H  S GF+  + +   L+  Y+    
Sbjct: 40  ILHSIS--------SLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSL 91

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           ++DA T+       +   +N +IS +   G                       + G    
Sbjct: 92  LADAHTITVNSDIVNPLPWNLLISSYVNNG-----------------------LHG---- 124

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEV 195
               EAL  YR M + +    + FT  SVL A      L  G+E+H  I    G   +  
Sbjct: 125 ----EALSAYREMVH-KGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLY 179

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V ++L  MYGK G ++ AR++F++M +RD VSW  +I  Y   G  +E F LF E+  +G
Sbjct: 180 VHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAG 239

Query: 256 IRPNAFTFAGV-----------------------------------LNACADHAAEELGK 280
              N  T+  +                                   L AC+   A +LG 
Sbjct: 240 AEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGT 299

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
            +H    R  +D +    +AL+ MYS+C ++ ++  +F  +    L +W S+++GY    
Sbjct: 300 VIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMD 359

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             ++A   F  +L SG +P+++    +L  C     + +G ++   I  + G       +
Sbjct: 360 RSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLW 419

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--I 458
             +V++ ARSG+   A+ V   +  + DK  + SL+ G  I G    A +  + + +  I
Sbjct: 420 NSLVEMYARSGKVLSAKRVFDSL-RRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRI 478

Query: 459 EPENPATYVTMANIYAS 475
           +P+     VTM  + ++
Sbjct: 479 KPDQ----VTMVAVLSA 491



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 121/241 (50%), Gaps = 7/241 (2%)

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           +  E   L ++  +  N  +   ++SS+L + + ++ L  GK++H + +  GF++  V+ 
Sbjct: 20  KAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLV 79

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVS---WTAMIGRYFQEGRREEGFALFSELIKS 254
             L   Y     + +A  I    V+ D+V+   W  +I  Y   G   E  + + E++  
Sbjct: 80  PKLVTFYSSFSLLADAHTI---TVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHK 136

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVEN 313
           G+RP+ FT+  VL AC +    + G++VH  +    G+    +  ++LV MY K G ++ 
Sbjct: 137 GVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDA 196

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++++FN MP  D VSW  +I+ YA  G+  +A E FE +  +G + + I +  +   C  
Sbjct: 197 ARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQ 256

Query: 374 A 374
            
Sbjct: 257 T 257


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 267/469 (56%), Gaps = 41/469 (8%)

Query: 13  EALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA+++  +++     P     +S++  C    ALE+G++VH++   +  +   F+ N L+
Sbjct: 314 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLI 373

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAK   + DA                               + +FD M +++  S+ A
Sbjct: 374 DMYAKSNLLIDA-------------------------------KKVFDVMAEQNVISYNA 402

Query: 129 MISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           MI GY    +  EAL+L+  M+   F  S+    T  S+L   +++  L L K+IHG I+
Sbjct: 403 MIEGYSSQEKLSEALELFHEMRVRLFPPSL---LTFVSLLGVSASLFALELSKQIHGLII 459

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G   D    SAL D+Y KC  + +AR +F++M ++D+V W AM   Y Q    EE   
Sbjct: 460 KFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 519

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           L+S L  S  +PN FTFA ++ A ++ A+   G+Q H  + ++G D   F  +ALV MY+
Sbjct: 520 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYA 579

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E ++K+FN     D+V W S+I+ +AQ+G  ++AL  F  ++K G QP+++ FV 
Sbjct: 580 KCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVA 639

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+HAG V+ GL +F+S+    G+    +HYAC+V LL RSG+  EA++ I KMP++
Sbjct: 640 VLSACSHAGRVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIE 698

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           P   +W SLL  CRI GN++L K AAE     +P++  +Y+ ++NI+AS
Sbjct: 699 PAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFAS 747



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 210/420 (50%), Gaps = 34/420 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HP+  + +S+I+ C Q   +E+G ++H  +  SGF   V++   L+D Y+K GNI +A+ 
Sbjct: 126 HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARL 185

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD++ E+   ++ T+I+G+TK G    +  LF +M +                      
Sbjct: 186 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRE---------------------- 223

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                      N V +++ +SSVLSA S ++ L  GK+IH Y++R G + D  V + L D
Sbjct: 224 ----------TNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLID 273

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            Y KC  +   R++FD+MV ++++SWT MI  Y Q     E   LF E+ + G +P+ F 
Sbjct: 274 FYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFA 333

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL +C    A E G+QVH Y  +   +   F  + L+ MY+K   + ++KKVF+ M 
Sbjct: 334 CTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA 393

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +++S+ ++I GY+      +ALE F  +      P  + FV +L        ++   Q
Sbjct: 394 EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQ 453

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H +  K G++      + ++D+ ++     +A  V  +M  K D  +W ++  G   H
Sbjct: 454 -IHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQH 511



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 205/400 (51%), Gaps = 32/400 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +++L+Q       +   K +H  +  SG +   F++N L++              
Sbjct: 25  PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILIN-------------- 70

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                   VCS         K   ++ AR +FD+MP ++  +W++M+S Y +     EAL
Sbjct: 71  --------VCS---------KSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEAL 113

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  +Q       N+F L+SV+ A + +  +  G ++HG+++R+GFD D  V ++L D 
Sbjct: 114 MVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDF 173

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G+I EAR +FD++ ++  V+WT +I  Y + GR      LF+++ ++ + P+ +  
Sbjct: 174 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 233

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + VL+AC+     E GKQ+H Y+ R G +      + L+  Y+KC  V+  +K+F+ M  
Sbjct: 234 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 293

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            +++SWT++I+GY QN    +A++ F  + + G +PD      VLT+C     +++G Q 
Sbjct: 294 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQ- 352

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            H+   K  L         ++D+ A+S    +A+ V   M
Sbjct: 353 VHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVM 392



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 3/261 (1%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K IHG I+ +G  SD  + + L ++  K   ++ AR +FDKM  +++++W++M+  Y Q+
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 239 GRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           G  EE   +F +L  KSG  PN F  A V+ AC      E G Q+HG++ R G+D   + 
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 166

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++L+  YSK GN+E ++ VF+ +     V+WT++IAGY + G    +LE F  + ++  
Sbjct: 167 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD  V   VL+AC+    ++ G Q  H+   + G          ++D   +  R     
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQ-IHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 285

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            +  +M +K +   W +++ G
Sbjct: 286 KLFDQMVVK-NIISWTTMISG 305


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 170/532 (31%), Positives = 285/532 (53%), Gaps = 68/532 (12%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLD 69
           L++++ +L   S  +   Y+ L+  C +   + + K++ SH++   F+P   F+ N LL 
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           +YAK G + DAQ LFD+M +RD+ S+N ++S + K GS++  +  FD MP RD+ S+   
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTT 126

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+G+   + P E+L+L++ MQ  E     ++T+ S+L+A + +  LR GK+IHG I+   
Sbjct: 127 IAGFSGNSCPQESLELFKRMQR-EGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRN 185

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F  +  +W+AL+DMY KCG I +AR +FD +  +++VSW  MI  Y + G+ E+   L  
Sbjct: 186 FLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLH 245

Query: 250 ELIKSGIRPNAFTFAGVLNA-CADHAAEELGKQVHGYMTR---------IGY-------- 291
           ++  SG  P+  T + ++ A C     +E  +    +  +         +GY        
Sbjct: 246 QMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREED 305

Query: 292 -------------DPYSFAASALVHMYSKCGNVENSKKV--------------------- 317
                        +P S+  S++V   +K  ++ + + V                     
Sbjct: 306 ALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALID 365

Query: 318 --------------FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
                         FN MP  ++VSW ++I G AQNG    ALE FE +L+   +PD++ 
Sbjct: 366 MYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVT 425

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+G+L+AC H   +++G +YF SI  +HG+T T DHYAC+V+LL R+GR  +A  +I  M
Sbjct: 426 FIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
              PD  +W++LL  C   G++  A+ AA  LFE++P     Y+ ++N+YAS
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYAS 537



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 186/372 (50%), Gaps = 38/372 (10%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C Q  L+   ++  +   P+     S++    Q   L  GK++H  +    F   VFI N
Sbjct: 135 CPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWN 194

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS------------------ 107
            L DMYAKCG I  A+ LFD + ++++ S+N MISG+ K G                   
Sbjct: 195 ALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP 254

Query: 108 -----------------LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                            +++AR +F E  ++D   WTAM+ GY +  +  +AL L+  M 
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEML 314

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E+   + +TLSSV+S+ + +  L  G+ +HG  +  G +++ +V SAL DMY KCG I
Sbjct: 315 -LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFI 373

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++AR +F+ M  R+VVSW AMI    Q G  ++   LF  +++   +P+  TF G+L+AC
Sbjct: 374 DDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSAC 433

Query: 271 ADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVS 328
                 E G++    +T + G  P     + +V++  + G +E +  +   M   PD + 
Sbjct: 434 LHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLI 493

Query: 329 WTSLIAGYAQNG 340
           W++L++  +  G
Sbjct: 494 WSTLLSICSTKG 505


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 160/442 (36%), Positives = 250/442 (56%), Gaps = 24/442 (5%)

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           KP V     +L  +A+ GNI +++ LFD+M  R++ S+N MIS + +   +++A  LF+E
Sbjct: 192 KPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEE 251

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+RD+ SWT MI+GYVR  +  EA +L   M  + N  +    +S  +      +  R 
Sbjct: 252 MPERDSVSWTTMINGYVRIGKLDEARELLNEMP-YRNIGAQTAMISGYIQCNKVDEARRF 310

Query: 178 GKEI-----------------HGYI------MRTGFDSDEVVWSALSDMYGKCGSINEAR 214
             EI                 HG I       +   + D V W+ +   Y + G ++ A 
Sbjct: 311 FDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAV 370

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           +IF++M +RD+VSW ++I  +   G+  +    F+ +   G +P+  +FA  L++CA  A
Sbjct: 371 KIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIA 430

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A ++G Q+H  + + GY  Y    +AL+ MY+KCG +  +  VFNG+   D++SW SLI 
Sbjct: 431 ALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIG 490

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GYA NG   +AL+ FE +   G  PD + F+G+L+AC HAG+VD GL+ F  + + + + 
Sbjct: 491 GYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIE 550

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
             A+HYAC+VDLL R GR  EA +++  M +K    +W +LLG CR HGNL+L + AA  
Sbjct: 551 PLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHK 610

Query: 455 LFEIEPENPATYVTMANIYASA 476
           L E EP   + YV ++NI+A A
Sbjct: 611 LSEFEPHKTSNYVLLSNIHAEA 632



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 209/439 (47%), Gaps = 37/439 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++ +I    +N  +E+ +++   L  S ++ GV   N ++  Y K G +++A+ LFDEM 
Sbjct: 71  WTLMITCYTRNGEVEKARELFDSLPCS-YRKGVACWNAMISGYVKKGRVNEAKRLFDEMP 129

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            +++ S+N+M++G+T+   +      F+EM +RD  SW  M+ G+++      A   ++ 
Sbjct: 130 VKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQE 189

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
            Q   N VS    LS      + ++  RL  ++           + V W+A+   Y +  
Sbjct: 190 TQK-PNVVSWVTMLSGFARNGNILESRRLFDQMP--------SRNIVSWNAMISAYVQRC 240

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I+EA ++F++M +RD VSWT MI  Y + G+ +E   L +E+    I       +G + 
Sbjct: 241 EIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQ 300

Query: 269 ACADHAA----EELGK--------QVHGY-----------MTRIGYDPYSFAASALVHMY 305
                 A    +E+G          + GY           +++   +      + ++  Y
Sbjct: 301 CNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCY 360

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           ++ G ++ + K+F  M   DLVSW SLIAG+  NG    AL+ F L+   G +PD + F 
Sbjct: 361 AQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFA 420

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHG-LTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             L++C     +  G Q  H +  K G L Y   + A ++ + A+ GR  EA  V + + 
Sbjct: 421 CGLSSCATIAALQVGNQ-LHQVVVKGGYLNYLVVNNA-LITMYAKCGRILEAGLVFNGI- 477

Query: 425 MKPDKFLWASLLGGCRIHG 443
              D   W SL+GG  I+G
Sbjct: 478 CHADVISWNSLIGGYAING 496



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 181/404 (44%), Gaps = 59/404 (14%)

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M E++  +YN+MIS + K G +  ARNLFD+MP+R+  SW  M+SGY+   +  EA  L+
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS-------DEVVWSA 199
            +M               + S    I C     E+     R  FDS           W+A
Sbjct: 61  VIMPR-----------RDLFSWTLMITCYTRNGEVEK--ARELFDSLPCSYRKGVACWNA 107

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-----IKS 254
           +   Y K G +NEA+++FD+M  ++++SW +M+  Y Q  +   G   F+E+     +  
Sbjct: 108 MISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSW 167

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
            +  + F   G L++      E     V  ++T             ++  +++ GN+  S
Sbjct: 168 NLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVT-------------MLSGFARNGNILES 214

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +++F+ MP  ++VSW ++I+ Y Q    D+A   FE +     + D + +  ++      
Sbjct: 215 RRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEM----PERDSVSWTTMINGYVRI 270

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G +D+  +  + +  ++    TA     ++    +  +  EA     ++    D   W +
Sbjct: 271 GKLDEARELLNEMPYRNIGAQTA-----MISGYIQCNKVDEARRFFDEIG-TWDVVCWNA 324

Query: 435 LLGGCRIHGNLD----LAKRAAEALFEIEPENPATYVTMANIYA 474
           ++ G   HG ++    L+KR          ++  T+ TM + YA
Sbjct: 325 MIAGYAHHGRINEALCLSKRMVN-------KDMVTWNTMISCYA 361



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 32/239 (13%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N   LK    + H+   P    ++  +  C    AL+ G ++H  +   G+   + ++N 
Sbjct: 397 NLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNA 456

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MYAKCG I +A  +F+ +   DV S+N++I G+   G  ++A  LF+EM        
Sbjct: 457 LITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASE----- 511

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             M    V +   + A        N    V +   L   +S V AI+ L           
Sbjct: 512 -GMAPDEVTFIGILSAC-------NHAGMVDHGLKLFKCMSKVYAIEPLAEH-------- 555

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEG 244
                     ++ + D+ G+ G ++EA +I   M V      W A++G     G  E G
Sbjct: 556 ----------YACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELG 604


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 262/478 (54%), Gaps = 38/478 (7%)

Query: 4   ILCNQRR----LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           ++CN+ R    L E L++ H       S Y +L+  C   R++   K+V +++ +SGF+P
Sbjct: 92  VVCNRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEP 151

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            +++ N +L M+ KCG + DA                               R LFDEMP
Sbjct: 152 DLYVMNRVLFMHVKCGLMLDA-------------------------------RKLFDEMP 180

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYR-MMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           ++D  SW  M+ G V      EA  L+  M + F +  S  F  ++++ A + +  +++G
Sbjct: 181 EKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTF--ATMIRASAGLGLVQVG 238

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K+IH   ++ G   D  V  AL DMY KCGSI +A  +FD+M ++  V W ++I  Y   
Sbjct: 239 KQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALH 298

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  EE  +L+ E+  SG   + FT + V+  CA  A+ E  KQ H  + R G+     A 
Sbjct: 299 GYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVAN 358

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +ALV  YSK G +E+++ VFN M   +++SW +LIAGY  +G   +A+E FE +L+ G  
Sbjct: 359 TALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVT 418

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P H+ F+ VL+AC+++GL  +G + F+S+K  H +   A HYAC+++LL R     EA  
Sbjct: 419 PTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYA 478

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +I   P KP   +WA+LL  CR+H NL+L K AAE L+ +EPE    Y+ + N+Y S+
Sbjct: 479 LIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSS 536


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/572 (31%), Positives = 283/572 (49%), Gaps = 104/572 (18%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQN----------------------------- 39
           +RL ++L +  ++   +   +S++I  C QN                             
Sbjct: 230 KRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLF 289

Query: 40  ------RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC 93
                  AL  GK++HSH   S F   + +    LDMYAKCG ++DAQ +   M +  + 
Sbjct: 290 RSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQ 349

Query: 94  SYNTMISGFTKGGSLEQARNL----------FDEMPQRDNFSWTAMISG----------- 132
           SYN +I G+ +     QA             FDE+      +  A I G           
Sbjct: 350 SYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLA 409

Query: 133 ------------------YVRYNQPIEALDLYRMMQ------------------NFENSV 156
                             Y +     EA DL+ MM+                  N E ++
Sbjct: 410 VKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETL 469

Query: 157 S------------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           +            + FT  SVL A +  Q L  G EIH  I+++G   D  V +AL DMY
Sbjct: 470 AHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMY 529

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            KCG I +A +I D+   + +VSW A+I  +    + E+    FS +++ G+ P+ FT+A
Sbjct: 530 CKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYA 589

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            VL+ CA+ A   LGKQ+H  + +       +  S LV MYSKCGN+++S+ +F   P  
Sbjct: 590 AVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNR 649

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D V+W +++ GYA +G+ ++AL+ FE +     +P+H  FV VL AC H GLVDKGL YF
Sbjct: 650 DFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYF 709

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             +  ++GL   ++HY+C+VD+L RSGR  EA +++ KMP + D  +W +LL  C+IHGN
Sbjct: 710 DVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGN 769

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +++A++A  AL +++P++ +  V ++NIYA A
Sbjct: 770 VEVAEKATRALLQLDPQDSSACVLLSNIYADA 801



 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 243/445 (54%), Gaps = 7/445 (1%)

Query: 22  SHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           + P   I  +S + Q C +  +L  GK+ H+ +   GF+P  F+SNCL+ MY KC  +  
Sbjct: 43  TQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDY 102

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A  +FD+M  RDV SYN++ISG+   G ++ AR  F EMP+RD  SW ++ISG+++  + 
Sbjct: 103 ACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGEC 162

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            +++D++  M        ++ +L+ VL A  A++   +G ++HG +++ GFD D V  SA
Sbjct: 163 RKSIDVFLEMGRCGVGF-DRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSA 221

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY KC  ++++  +F ++ +++ VSW+AMI    Q  R  EG  LF E+   G+  +
Sbjct: 222 LLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVS 281

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
              +A +  +CA  +A  LGK++H +  +  +       +A + MY+KCG + +++KV +
Sbjct: 282 QSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLS 341

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            MP+  L S+ ++I GYA++    +AL+ F+LLLK+G   D I   G L AC       +
Sbjct: 342 SMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLE 401

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G Q  H +  K            I+D+  +     EA D+   M  + D   W +++  C
Sbjct: 402 GRQ-VHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMME-RRDAVSWNAIIAAC 459

Query: 440 RIHGNLD--LAKRAAEALFEIEPEN 462
             +GN +  LA  A+     +EP++
Sbjct: 460 EQNGNEEETLAHFASMIHSRMEPDD 484



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 142/318 (44%), Gaps = 34/318 (10%)

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           PI   +   + QN     +   T S +    S    L  GK+ H  ++  GF+    V +
Sbjct: 29  PIPTNNFSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSN 88

Query: 199 ALSDMYGKCGSINEARQIFDKMVD-------------------------------RDVVS 227
            L  MY KC  ++ A ++FDKM                                 RDVVS
Sbjct: 89  CLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVS 148

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W ++I  + Q G   +   +F E+ + G+  +  + A VL AC      ++G QVHG + 
Sbjct: 149 WNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVV 208

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           + G+D      SAL+ MY+KC  +++S  VF+ +P  + VSW+++IAG  QN    + LE
Sbjct: 209 KFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLE 268

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDL 406
            F+ +   G      ++  +  +C     +  G + + H++K   G           +D+
Sbjct: 269 LFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVG--TATLDM 326

Query: 407 LARSGRFHEAEDVISKMP 424
            A+ GR  +A+ V+S MP
Sbjct: 327 YAKCGRMADAQKVLSSMP 344



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 35/225 (15%)

Query: 248 FSELIKSGIRPNA--FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           FS L ++  +P A   TF+ +   C+   +   GKQ H  M   G++P +F ++ L+ MY
Sbjct: 35  FSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMY 94

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA---------------------------- 337
            KC  ++ + KVF+ M   D+VS+ S+I+GYA                            
Sbjct: 95  IKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVIS 154

Query: 338 ---QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
              QNG   K+++ F  + + G   D      VL AC      D G+Q  H +  K G  
Sbjct: 155 GFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQ-VHGLVVKFGFD 213

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
                 + ++ + A+  R  ++  V S++P K +   W++++ GC
Sbjct: 214 CDVVTGSALLGMYAKCKRLDDSLSVFSELPEK-NWVSWSAMIAGC 257


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 263/473 (55%), Gaps = 45/473 (9%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGN---------ISDAQTLFDEMQERDVCSYNT 97
           ++H  +   G +    + N LL +Y KC +         ++ A+ LFDEM +R+   + T
Sbjct: 169 QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTT 228

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I+G+ + G L  AR + D M ++   +W AMISGY+ +    +AL L+R M+     V 
Sbjct: 229 LITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQV- 287

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE----------------------- 194
           ++ T +SV+SA +      LGK++H YI++   + D                        
Sbjct: 288 DESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGA 347

Query: 195 ------------VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
                       + W+ L   Y   G + EA+  F +M ++++++WT MI    Q G  E
Sbjct: 348 RKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGE 407

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   LF+++   G  PN + FAG + AC+   A E G+Q+H  +  +G+D      +A++
Sbjct: 408 QALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMI 467

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY++CG VE ++ +F  MP  D VSW S+IA   Q+G   KA+E +E +LK G  PD  
Sbjct: 468 TMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRR 527

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ VL+AC+HAGLV++G +YF+S+ E +G+    DHYA ++DL  R+G+F +A++VI  
Sbjct: 528 TFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDS 587

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           MP +    +W +LL GCR HGN+DL   AAE LF++ P++  TYV ++N+YAS
Sbjct: 588 MPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYAS 640



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 226/488 (46%), Gaps = 82/488 (16%)

Query: 36  CRQN-RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCS 94
           C QN  +    + VH H+ +SGFK    I N L+D+Y K  +   A+ LFDE+ + DV +
Sbjct: 22  CPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIA 81

Query: 95  YNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
             T+I+ ++  G+L+ AR +F+E P   RD   + AMI+GY   N    A++L+R M+ +
Sbjct: 82  RTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMR-W 140

Query: 153 ENSVSNKFTLSSVLSAVSAI-----QC-------LRLGKEIHGYIM-------------- 186
            N   + FT +SVLSA + I     QC       ++ G EI   ++              
Sbjct: 141 ANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSP 200

Query: 187 -----------RTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
                      R  FD     +E +W+ L   Y + G +  AR+I D M ++  ++W AM
Sbjct: 201 LVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAM 260

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  Y   G  E+   LF ++   G++ +  T+  V++ACAD     LGKQVH Y+ +   
Sbjct: 261 ISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNEL 320

Query: 292 DP----YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY----------- 336
           +P         + L+ +Y K G V+ ++K+F  MP  D+++W +L++GY           
Sbjct: 321 NPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKS 380

Query: 337 --------------------AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
                               AQNG  ++AL+ F  +   G +P+   F G +TAC+  G 
Sbjct: 381 FFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGA 440

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ G Q  H+     G   T      ++ + AR G    A  +   MP   D   W S++
Sbjct: 441 LENGRQ-LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMI 498

Query: 437 GGCRIHGN 444
                HG+
Sbjct: 499 AALGQHGH 506



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 176/341 (51%), Gaps = 9/341 (2%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG----VFISNCLLDMYAKCGNISDAQT 82
           S Y+S+I  C        GK+VH+++  +   P     + + N L+ +Y K G +  A+ 
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARK 349

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F EM  +D+ ++NT++SG+   G +E+A++ F +MP+++  +WT MISG  +     +A
Sbjct: 350 IFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQA 409

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L L+  M+  +    N +  +  ++A S +  L  G+++H  I+  G DS   V +A+  
Sbjct: 410 LKLFNQMK-LDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMIT 468

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY +CG +  AR +F  M   D VSW +MI    Q G   +   L+ +++K GI P+  T
Sbjct: 469 MYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRT 528

Query: 263 FAGVLNACADHAA--EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           F  VL+AC+ HA   EE  +  +  +   G  P     + ++ ++ + G   ++K V + 
Sbjct: 529 FLTVLSACS-HAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDS 587

Query: 321 MP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           MP       W +L+AG   +G  D  +E  E L K   Q D
Sbjct: 588 MPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD 628



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 155/393 (39%), Gaps = 85/393 (21%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           ++N++     L     +    L + +HG+++ +GF     + + L D+Y K      AR+
Sbjct: 10  LANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARK 69

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGR----RE----------------------------- 242
           +FD++   DV++ T +I  Y   G     RE                             
Sbjct: 70  LFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGH 129

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
               LF  +  +  +P+ FTFA VL+A       E    Q+HG + + G + +    +AL
Sbjct: 130 SAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNAL 189

Query: 302 VHMYSKCG---------NVENSKKVFNGMPRPDLVSWTSLIAGYAQN------------- 339
           + +Y KC           + +++K+F+ MP+ +   WT+LI GY +N             
Sbjct: 190 LSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTM 249

Query: 340 ------------------GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
                             G+ + AL  F  +   G Q D   +  V++AC   G    G 
Sbjct: 250 TEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGK 309

Query: 382 QYFHSIKEKHGLTYTADHYACI----VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           Q  H+   K+ L    D    +    + L  + G+   A  +  +MP+K D   W +LL 
Sbjct: 310 Q-VHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLLS 367

Query: 438 GCRIHGNLDLAKRAAEALFEIEPE-NPATYVTM 469
           G    G ++ AK    + F   PE N  T+  M
Sbjct: 368 GYVNAGRMEEAK----SFFAQMPEKNLLTWTVM 396



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 105/248 (42%), Gaps = 38/248 (15%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL++ +Q+      P+   ++  I  C    ALE G+++H+ +   G    + + N +
Sbjct: 407 EQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAM 466

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA+CG +  A+T+F  M   D  S+N+MI+   + G                     
Sbjct: 467 ITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHG--------------------- 505

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                       ++A++LY  M   E  + ++ T  +VLSA S    +  G      ++ 
Sbjct: 506 ----------HGVKAIELYEQMLK-EGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE 554

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGF 245
             G    E  ++ + D++ + G  ++A+ + D M  +     W A++      G  + G 
Sbjct: 555 NYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGI 614

Query: 246 ALFSELIK 253
               +L K
Sbjct: 615 EAAEKLFK 622



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKK-VHSHLKSSGFKPGVFISNCLLDMYAKC 74
           Q+L +   P    + +++  C     +EEG +  +S L++ G  PG      ++D++ + 
Sbjct: 516 QMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRA 575

Query: 75  GNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSL----EQARNLFDEMPQRD 122
           G  SDA+ + D M  E     +  +++G    G++    E A  LF  +PQ D
Sbjct: 576 GKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD 628


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/508 (33%), Positives = 270/508 (53%), Gaps = 46/508 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
            + A Q+   I  P P+  S+LI          E  ++++ L++ G KP    ++  L +
Sbjct: 82  FRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH---NSVFLTV 138

Query: 71  YAKCGNISDAQTLFDEMQERDVCSY-------NTMISGFTKGGSLEQARNLFDEMPQRDN 123
              CG   DA  + +   +   C         N +I  + K   +E AR +FD++  +D 
Sbjct: 139 AKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDV 198

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SWT+M S YV    P   L ++  M  +     N  TLSS+L A S ++ L+ G+ IHG
Sbjct: 199 VSWTSMSSCYVNCGLPRLGLAVFCEM-GWNGVKPNSVTLSSILPACSELKDLKSGRAIHG 257

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           + +R G   +  V SAL  +Y +C S+ +AR +FD M  RDVVSW  ++  YF     ++
Sbjct: 258 FAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDK 317

Query: 244 GFALFSELIKSGI-----------------------------------RPNAFTFAGVLN 268
           G ALFS++   G+                                   +PN  T +  L 
Sbjct: 318 GLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLP 377

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+   +  +GK+VH Y+ R          +ALV+MY+KCG++  S+ VF+ + R D+V+
Sbjct: 378 ACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVA 437

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W ++I   A +G   + L  FE +L+SG +P+ + F GVL+ C+H+ LV++GLQ F+S+ 
Sbjct: 438 WNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMG 497

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             H +   A+HYAC+VD+ +R+GR HEA + I +MPM+P    W +LLG CR++ N++LA
Sbjct: 498 RDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELA 557

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           K +A  LFEIEP NP  YV++ NI  +A
Sbjct: 558 KISANKLFEIEPNNPGNYVSLFNILVTA 585



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 148/283 (52%), Gaps = 1/283 (0%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G   +A+ LFD +PQ D  + + +IS +     P EA+ LY  ++       N   L+  
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
            +  ++    R+ KE+H   +R G  SD  + +AL   YGKC  +  AR++FD +V +DV
Sbjct: 140 KACGASGDASRV-KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDV 198

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSWT+M   Y   G    G A+F E+  +G++PN+ T + +L AC++    + G+ +HG+
Sbjct: 199 VSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGF 258

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
             R G     F  SALV +Y++C +V+ ++ VF+ MP  D+VSW  ++  Y  N   DK 
Sbjct: 259 AVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKG 318

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           L  F  +   G + D   +  V+  C   G  +K ++    ++
Sbjct: 319 LALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQ 361



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 2/229 (0%)

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G    A+Q+FD +   D  + + +I  +   G   E   L++ L   GI+P+   F  V 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC         K+VH    R G    +F  +AL+H Y KC  VE +++VF+ +   D+V
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SWTS+ + Y   G+P   L  F  +  +G +P+ +    +L AC+    +  G +  H  
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSG-RAIHGF 258

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
             +HG+       + +V L AR     +A  V   MP + D   W  +L
Sbjct: 259 AVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHR-DVVSWNGVL 306


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 256/460 (55%), Gaps = 62/460 (13%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P V     LL+ Y + G I +A+ LFD + +R+V ++N M+SG+ +   +E+A  LF EM
Sbjct: 227 PNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEM 286

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P +++ SWT MIS  VR  +  EA DL   M        + F   + L            
Sbjct: 287 PDKNSISWTTMISALVRGGKLQEAKDLLDKMP------FDSFAAKTAL------------ 328

Query: 179 KEIHGYIM-------RTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             +HGY+        R  FD     D V W+ +   Y  CG ++EA  +F +M ++D+VS
Sbjct: 329 --MHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVS 386

Query: 228 WTAMIGRYFQEGRREEGFALFSEL---------------IKSGI---------------- 256
           W  MI  Y  +G+  +   +F ++               +++G+                
Sbjct: 387 WNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAK 446

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           R +  T+A  L+ACAD AA  +G+Q H  + R GY   SFA +AL+  Y+KCG +  +++
Sbjct: 447 RADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQ 506

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF+ MP PD+VSW +LI GYA NG   +A+  F  +  +  +PD + FVGVL+AC+HAGL
Sbjct: 507 VFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGL 566

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +D+G  +F+S+ + + L   A+HYAC+VDLL RSGR  EA ++I  M ++P+  +W ++L
Sbjct: 567 IDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAML 626

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           G CR+H N +LA+ AAE L+E+EP   + YV ++NI A A
Sbjct: 627 GACRVHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEA 666



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 212/490 (43%), Gaps = 114/490 (23%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N +L   A+ G I+DA+ LFDE+  R+  S+N MI+  +  G +  AR+LFD MP RD F
Sbjct: 46  NAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPARDGF 105

Query: 125 SWTAMISGYVRYNQ---PIEALDL----------------YRMMQNFENSVS-------- 157
           SWT M+S Y R  +     +ALD                 Y     F+++V+        
Sbjct: 106 SWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAP 165

Query: 158 NKFTLSSVLSAVS----AIQCLRLGKE------------IHGYIMRTGFDS--------- 192
           +  + +SVL  ++     ++ ++   E            + GY+     DS         
Sbjct: 166 DIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVP 225

Query: 193 --DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             + V W  L + Y + G I EAR++FD++ DR+V +W  M+  Y +    EE + LF+E
Sbjct: 226 SPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTE 285

Query: 251 LI-KSGIRPNAFTFAGVLNACADHAAEELGKQ-----------VHGYM-------TRIGY 291
           +  K+ I       A V       A + L K            +HGY+        R+ +
Sbjct: 286 MPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIF 345

Query: 292 DPY----SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA---------- 337
           D      +   + ++  Y  CG ++ +  +F  MP  D+VSW ++IAGYA          
Sbjct: 346 DGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVG 405

Query: 338 ---------------------QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
                                QNG+  +AL++F L+ +   + D   +   L+AC     
Sbjct: 406 IFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAA 465

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           +  G Q FHS+  + G  Y  D +A   ++   A+ GR  EA  V  +MP  PD   W +
Sbjct: 466 LHVGRQ-FHSLLARSG--YIGDSFAGNALISAYAKCGRILEARQVFDEMP-APDIVSWNA 521

Query: 435 LLGGCRIHGN 444
           L+ G   +G+
Sbjct: 522 LIDGYASNGH 531



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 65/254 (25%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S Y+  +  C    AL  G++ HS L  SG+    F  N L+  YAKCG I +A+ +FDE
Sbjct: 451 STYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDE 510

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M   D+ S+N +I G+   G   +A ++F EM   D           VR           
Sbjct: 511 MPAPDIVSWNALIDGYASNGHGTEAISVFREMEDND-----------VR----------- 548

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
                      ++ T   VLSA S           H  ++  GFD     +++++  Y  
Sbjct: 549 ----------PDEVTFVGVLSACS-----------HAGLIDEGFD----FFNSMTKDY-- 581

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
             ++    + +  MVD        ++GR    GR  E F +   +    ++PNA  +  +
Sbjct: 582 --ALRPVAEHYACMVD--------LLGR---SGRLSEAFEIIQGM---QVQPNAGVWGAM 625

Query: 267 LNACADHAAEELGK 280
           L AC  H   EL +
Sbjct: 626 LGACRVHKNHELAQ 639



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           ++ G +  ++++F+ MP  + VS+ ++++  A++G    A   F+ + +  T    + + 
Sbjct: 22  ARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNT----VSWN 77

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            ++ AC+  G V      F ++  + G ++T      +V   AR+G    A D + +MP 
Sbjct: 78  AMIAACSDHGRVADARDLFDAMPARDGFSWT-----LMVSCYARAGELGLARDALDRMPG 132

Query: 426 KPDKFLWASLLGGCRIHGNLDLA 448
                 + +++ G   HG  D A
Sbjct: 133 DKCTACYNAMISGYAKHGRFDDA 155


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 247/454 (54%), Gaps = 33/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++ I  C +   L  G ++H  L +SGF    FIS+ L+DMY KCG+       
Sbjct: 205 PNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGH------- 257

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   LE A  +F++MP++   +W +MISGY      I  +
Sbjct: 258 ------------------------LEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCI 293

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L++ M N E       TLSS++   S    L  GK +HGY +R     D  V S+L D+
Sbjct: 294 QLFKRMYN-EGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDL 352

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A +IF  +    VVSW  MI  Y  EG+  E   LFSE+ KS +  +A TF
Sbjct: 353 YFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITF 412

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL AC+  AA E GK++H  +     D       AL+ MY+KCG V+ +  VF  +P+
Sbjct: 413 TSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLVSWTS+I  Y  +G    ALE F  +L+S  +PD + F+ +L+AC HAGLVD+G  Y
Sbjct: 473 RDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYY 532

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-MKPDKFLWASLLGGCRIH 442
           F+ +   +G+    +HY+C++DLL R+GR HEA +++ + P ++ D  L ++L   CR+H
Sbjct: 533 FNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLH 592

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N+DL    A  L + +P++ +TY+ ++N+YASA
Sbjct: 593 RNIDLGAEIARTLIDKDPDDSSTYILLSNMYASA 626



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 212/437 (48%), Gaps = 39/437 (8%)

Query: 13  EALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           EAL++  ++ H     P    Y S+ + C        GK +H+ L  +G    + + + L
Sbjct: 88  EALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSL 147

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY KC     A  LF+EM E+DV  +NT+IS + + G+ +                  
Sbjct: 148 VGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFK------------------ 189

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                        +AL+ + +M+ F     N  T+++ +S+ + +  L  G EIH  ++ 
Sbjct: 190 -------------DALEYFGLMRRFGFE-PNSVTITTAISSCARLLDLNRGMEIHEELIN 235

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +GF  D  + SAL DMYGKCG +  A +IF++M  + VV+W +MI  Y  +G       L
Sbjct: 236 SGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQL 295

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  +   G++P   T + ++  C+  A    GK VHGY  R    P  F  S+L+ +Y K
Sbjct: 296 FKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFK 355

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG VE ++K+F  +P+  +VSW  +I+GY   G   +AL  F  + KS  + D I F  V
Sbjct: 356 CGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSV 415

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTAC+    ++KG +  + I EK  L         ++D+ A+ G   EA  V   +P K 
Sbjct: 416 LTACSQLAALEKGKEIHNLIIEKK-LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KR 473

Query: 428 DKFLWASLLGGCRIHGN 444
           D   W S++     HG+
Sbjct: 474 DLVSWTSMITAYGSHGH 490



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 197/414 (47%), Gaps = 32/414 (7%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L++ C  +++L++GK +H  + + G +  +F+   L++ Y  C     A+ +FD M+  +
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNME--N 66

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
            C  +                             W  +++GY +    +EAL+L+  + +
Sbjct: 67  PCEISL----------------------------WNGLMAGYTKNYMYVEALELFEKLLH 98

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
           +     + +T  SV  A   +    LGK IH  +++TG   D VV S+L  MYGKC +  
Sbjct: 99  YPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFE 158

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A  +F++M ++DV  W  +I  Y+Q G  ++    F  + + G  PN+ T    +++CA
Sbjct: 159 KAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCA 218

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                  G ++H  +   G+   SF +SALV MY KCG++E + ++F  MP+  +V+W S
Sbjct: 219 RLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNS 278

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I+GY   G     ++ F+ +   G +P       ++  C+ +  + +G ++ H    ++
Sbjct: 279 MISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRN 337

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +       + ++DL  + G+   AE +   +P K     W  ++ G    G L
Sbjct: 338 RIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIP-KSKVVSWNVMISGYVAEGKL 390


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 265/481 (55%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC Q  LK+AL +L   S+P+      LI    +  +L +   VH  L   GF    
Sbjct: 45  IQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDP 104

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++  L++M                               F++  +++ AR +FD+  +R
Sbjct: 105 FLATKLINM-------------------------------FSELDTVDNARKVFDKTRKR 133

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL----RL 177
             + W A+        +  + L+LY  M N     S++FT + +L A  A +CL    + 
Sbjct: 134 TIYVWNALFRALALAGRGNDVLELYPRM-NMMGVSSDRFTYTYLLKACVASECLVSFLQK 192

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIH +I+R G+ +   V + L DMY + G ++ A  +FD+M  ++VVSW+AMI  Y +
Sbjct: 193 GKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAK 252

Query: 238 EGRREEGFALFSELI--KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            G+  E   LF E++       PN+ T   VL ACA  AA E GK +H Y+ R G D   
Sbjct: 253 NGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSIL 312

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              SAL+ MY++CG +E+ + +F+ M + D+V W SLI+ Y  +G   KA++ FE ++  
Sbjct: 313 PVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDH 372

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P HI F+ VL AC+H GLV++G + F S+ ++HG+  + +HYAC+VDLL R+ R  E
Sbjct: 373 GFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDE 432

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  +I  + ++P   +W SLLG CRIH +++LA+RA++ LF++EP N   YV +A+IYA 
Sbjct: 433 AAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAE 492

Query: 476 A 476
           A
Sbjct: 493 A 493


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 265/473 (56%), Gaps = 17/473 (3%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + EA+++    S      ++ ++  C +N  L EG      ++ S  +P  F    ++  
Sbjct: 97  VSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIII-- 154

Query: 71  YAKCGNISDAQTLFDEMQERDVCS------YNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
              C ++   Q +  ++ +  VCS         ++  + + G +  AR +FD MP R   
Sbjct: 155 --PCCDLGFGQQVHADIVK--VCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLV 210

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +W AMIS Y +Y +  +++ L+R +   E   ++++T + VL+  +A   +    ++H  
Sbjct: 211 TWNAMISCYSKYGRGDKSIGLFRQLXR-EGISADEYTYAIVLNEFAARWQVFEAMQVHSL 269

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I+  GF SD    +AL ++Y KCG +  A ++F+++ D+DVVSWT +I  + Q G  EE 
Sbjct: 270 IIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEA 329

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY-DPYSFAASALVH 303
             LF ++    I PN+FTF G+L ACAD  A + G+  HG + + G         SA+V 
Sbjct: 330 MWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVD 389

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE---LLLKSGTQPD 360
           MYSKCG + ++ + F  MP  D+ SW  +I GYAQNG   KAL+ +    LL  SG  P+
Sbjct: 390 MYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPN 449

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            + FVGVL AC+H GL+ +G  YF  + +KH +  TA+HY C+VDLL R+G   EAE +I
Sbjct: 450 EVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALI 509

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
             +P+KPD  +W +LLG C++HG++ + +R AE L+  EP N + YV +AN Y
Sbjct: 510 LALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSY 562



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/393 (32%), Positives = 204/393 (51%), Gaps = 10/393 (2%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           +H+ L  +G    V+  N LL  Y     +SDA  L   M +  V SYNT++SG+ K G 
Sbjct: 37  LHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGL 96

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           + +A  LFD   +RD  SW  ++SG V+ ++  E L  +  M+       N FT + ++ 
Sbjct: 97  VSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDN-FTYAIIIP 155

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
                  L  G+++H  I++   D D  + + L  MY + G I +AR++FD M  R +V+
Sbjct: 156 CCD----LGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVT 211

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W AMI  Y + GR ++   LF +L + GI  + +T+A VLN  A         QVH  + 
Sbjct: 212 WNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLII 271

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
             G+    F  +ALV++YSKCG V ++ ++F  +P  D+VSWT +I G+ Q+G  ++A+ 
Sbjct: 272 ERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMW 331

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVD 405
            F  +     +P+   F G+L AC  A    KG ++FH +  K GL   AD    + +VD
Sbjct: 332 LFYQMQLGDIEPNSFTFGGLLGACADANAFQKG-RHFHGLVLKFGLL-GADVVVGSAVVD 389

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           + ++ G   +A     +MP + D   W  ++ G
Sbjct: 390 MYSKCGEMGDALRAFQEMPER-DIASWNGIICG 421


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 262/447 (58%), Gaps = 27/447 (6%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S+++ C  +  L  G+++H ++  SGF+   +  + L+DMY+ C  +S+A  +FD+  
Sbjct: 239 FPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQ-- 296

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                        + +  S+ ++  L           W +M+SG+V     +EAL +   
Sbjct: 297 -------------YFRNSSVSESLAL-----------WNSMLSGHVVNGDYVEALSMISH 332

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M        + +T S VL        L L  ++HG+++ +G++ D VV S L D+Y K G
Sbjct: 333 MHR-SGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQG 391

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SIN A ++F+++ D+DVV+W+++I    + G  +  F+LF ++I  G++ + F  + VL 
Sbjct: 392 SINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLK 451

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+  A+ + GKQVH    + GY+      +AL+ MY+KCG++E++  +F  +   D +S
Sbjct: 452 ACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMS 511

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WTS+I G AQNG  ++A+     +++SGT+P+ I  +GVLTAC H+GLV++    F+SI+
Sbjct: 512 WTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIE 571

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             HGL    +HY C+VD+L ++GRF EA  +IS+MP KPDK +W+SLLG C  + N DLA
Sbjct: 572 TNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLA 631

Query: 449 KRAAEALFEIEPENPATYVTMANIYAS 475
              AE L    PE+ + Y+ ++N+YA+
Sbjct: 632 NIVAEHLLATSPEDVSVYIMLSNVYAA 658



 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 242/464 (52%), Gaps = 20/464 (4%)

Query: 2   IDILCNQRRLKEALQILHQ-----ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           + +L N     EAL + ++     I  P+  +YS++++ C   R +E GK VH H+  + 
Sbjct: 76  VSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAK 135

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
               + + N LLDMY KCG++ DAQ +F E+  ++  S+NT+I G+ K G ++ A  LFD
Sbjct: 136 LDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFD 195

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +MP+ D  SW ++I+G V  N    AL    MM   +    ++FT  SVL A      L 
Sbjct: 196 KMPEPDIVSWNSIIAGLVD-NASSRALRFVSMMHG-KGLKMDEFTFPSVLKACGCSDELM 253

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS-----WTAM 231
           LG+EIH YI+++GF+S     SAL DMY  C  ++EA +IFD+      VS     W +M
Sbjct: 254 LGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSM 313

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +  +   G   E  ++ S + +SG+R + +TF+ VL  C +     L  QVHG++   GY
Sbjct: 314 LSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGY 373

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           +      S L+ +Y+K G++ N+ ++F  +P  D+V+W+SLI G A+ G    A   F  
Sbjct: 374 ELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMD 433

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           ++  G Q DH V   VL AC+       G Q  HS+  K G          ++D+ A+ G
Sbjct: 434 MIHLGLQIDHFVISIVLKACSSLASHQHGKQ-VHSLCLKKGYESEGVVTTALIDMYAKCG 492

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
              +A  +   +  + D   W S++ GC  +G      RA EA+
Sbjct: 493 DIEDALSLFGCLS-EIDTMSWTSIIVGCAQNG------RAEEAI 529



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 213/456 (46%), Gaps = 80/456 (17%)

Query: 34  QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC 93
           ++C + R+++  K +HSH+  SGF   +FI                              
Sbjct: 11  RYCIRFRSIKNAKSLHSHIIKSGFCNHIFI------------------------------ 40

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
             N MIS ++K  S+  ARN+FDEMP R+  SWT M+S     + P EAL LY  M   +
Sbjct: 41  -LNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESK 99

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
               N+F  S+VL A   ++ + LGK +H +I +   D D V+ +AL DMY KCGS+ +A
Sbjct: 100 IEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDA 159

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL----------IKSGIRPNA--- 260
           +++F ++  ++  SW  +I  Y ++G  ++   LF ++          I +G+  NA   
Sbjct: 160 QRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSR 219

Query: 261 -----------------FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
                            FTF  VL AC       LG+++H Y+ + G++   +  SAL+ 
Sbjct: 220 ALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALID 279

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVS-----WTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           MYS C  +  + K+F+   R   VS     W S+++G+  NG   +AL     + +SG +
Sbjct: 280 MYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVR 339

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-YACIV-----DLLARSGR 412
            D   F  VL  C +   +    Q        HG   T+ +   C+V     D+ A+ G 
Sbjct: 340 FDFYTFSIVLKICMNFDNLSLASQV-------HGFVITSGYELDCVVGSILIDIYAKQGS 392

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            + A  +  ++P K D   W+SL+ GC   G+  LA
Sbjct: 393 INNALRLFERLPDK-DVVAWSSLITGCARFGSDKLA 427



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 147/338 (43%), Gaps = 54/338 (15%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           QI H   SI   +++ C    + + GK+VHS     G++    ++  L+DMYAKCG+I D
Sbjct: 440 QIDHFVISI---VLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIED 496

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
                                          A +LF  + + D  SWT++I G  +  + 
Sbjct: 497 -------------------------------ALSLFGCLSEIDTMSWTSIIVGCAQNGRA 525

Query: 140 IEALDL-YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI-MRTGFDSDEVVW 197
            EA+ L ++M+++   +  NK T+  VL+A      +    ++   I    G       +
Sbjct: 526 EEAISLLHKMIES--GTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHY 583

Query: 198 SALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG- 255
           + + D+ G+ G   EA ++  +M    D   W++++G       R+    +   L+ +  
Sbjct: 584 NCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSP 643

Query: 256 -------IRPNAFTFAGVLNACAD--HAAEELGKQVHGYMTRIGYD-PYSFAASALVHM- 304
                  +  N +   G+ ++ +      +++GK+  G   +I Y+ P+ F     +H+ 
Sbjct: 644 EDVSVYIMLSNVYAALGMWDSVSKVRETVKKIGKKRAG---KIFYEIPFKFYFMEHLHLG 700

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           ++K G      KV   +  PDLVSW ++IAG A N  P
Sbjct: 701 HAKQGLNGGVVKVIYPILEPDLVSWNNVIAGLADNASP 738


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 242/455 (53%), Gaps = 41/455 (9%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+   +  +++ C +  AL EG++VH  L   GF+   F+   L+DMY+  G + DA  
Sbjct: 196 RPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYK 255

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F EM ER+V ++ +MI+G+     L  AR LFD  P+RD   W  M+SGY+     +EA
Sbjct: 256 IFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEA 315

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             L+  M N                                         D + W+ +  
Sbjct: 316 RKLFXEMPN----------------------------------------RDVMFWNTVLK 335

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAF 261
            Y   G++     +F++M +R++ SW A+IG Y   G   E    F  ++ +S + PN  
Sbjct: 336 GYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDA 395

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   VL+ACA   A +LGK VH Y    G     +  +AL+ MY+KCG +EN+  VF GM
Sbjct: 396 TLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 455

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              DL+SW +LI G A +     AL  F  +  +G +PD I F+G+L ACTH GLV+ G 
Sbjct: 456 DTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGF 515

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
            YF S+ + + +    +HY C+VD+LAR+GR  +A   + KMP++ D  +WA LLG CRI
Sbjct: 516 AYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRI 575

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + N++LA+ A + L E+EP+NPA YV ++NIY  A
Sbjct: 576 YKNVELAELALQRLIELEPKNPANYVMLSNIYGDA 610



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 193/429 (44%), Gaps = 63/429 (14%)

Query: 37  RQN-RALEEGKKVH---SHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           R+N R+ +  K+VH   + + ++GF+   +I+  L+ + A    ++ A+ LFD++ + ++
Sbjct: 105 RENMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNI 164

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
             +N+M  G+ +  S  +   LF +M   D           +R                 
Sbjct: 165 ALWNSMFRGYAQSESYREVVFLFFQMKGMD-----------IR----------------- 196

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
                N FT   VL +   I  L  G+++H ++++ GF  +  V + L DMY   G++ +
Sbjct: 197 ----PNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGD 252

Query: 213 ARQIFDKMVDRDVVSWTAMIGRY-----FQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           A +IF +M +R+VV+WT+MI  Y         RR    A   +++   I  + +   G +
Sbjct: 253 AYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDM 312

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
                   E   + V  + T             ++  Y+  GNVE  + +F  MP  ++ 
Sbjct: 313 VEARKLFXEMPNRDVMFWNT-------------VLKGYATNGNVEALEGLFEEMPERNIF 359

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           SW +LI GYA NG+  + L  F+ +L +S   P+    V VL+AC   G +D G ++ H 
Sbjct: 360 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG-KWVHV 418

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
             E  GL         ++D+ A+ G    A  V   M  K D   W +L+GG  +H    
Sbjct: 419 YAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTK-DLISWNTLIGGLAMH---- 473

Query: 447 LAKRAAEAL 455
              R A+AL
Sbjct: 474 --SRGADAL 480



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 146/313 (46%), Gaps = 22/313 (7%)

Query: 169 VSAIQCLR-------LGKEIH---GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++A++CLR         K++H     I+  GF  +E +   L  +      +  ARQ+FD
Sbjct: 98  LTALRCLRENMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFD 157

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           ++ D ++  W +M   Y Q     E   LF ++    IRPN FTF  VL +C    A   
Sbjct: 158 QIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIE 217

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G+QVH ++ + G+    F  + L+ MYS  G V ++ K+F  M   ++V+WTS+I GY  
Sbjct: 218 GEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYIL 277

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +     A   F+L      + D +++  +++     G + +  + F  +  +  + +   
Sbjct: 278 SADLVSARRLFDL----APERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNT- 332

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG-NLDLAKRAAEALFE 457
               ++   A +G     E +  +MP + + F W +L+GG   +G   ++       L E
Sbjct: 333 ----VLKGYATNGNVEALEGLFEEMPER-NIFSWNALIGGYAHNGLFFEVLGSFKRMLSE 387

Query: 458 IE-PENPATYVTM 469
            + P N AT VT+
Sbjct: 388 SDVPPNDATLVTV 400


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/480 (32%), Positives = 281/480 (58%), Gaps = 5/480 (1%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLI-QFCRQNRALEEGKKVHSHLKSSGFKP 59
            +D+     R+ +A ++ + + +P    Y+++I  + RQ++ L+  +   S  ++     
Sbjct: 280 TLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFD 339

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQ---ERDVCSYNTMISGFTKGGSLEQARNLFD 116
            + +S  L       G++   Q     ++     ++C  NT++  + K G+L +A  +FD
Sbjct: 340 EISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFD 399

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +M +RD  SW A+I+ + +  + ++ L L+  M        + FT  SV+ A +  Q L 
Sbjct: 400 DMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLR-STMEPDDFTYGSVVKACAGQQALN 458

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            G EIHG I+++G   D  V SAL DMYGKCG + EA +I D++ ++  VSW ++I  + 
Sbjct: 459 YGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFS 518

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
            + + E     FS++++ G+ P+ FT+A VL+ CA+ A  ELGKQ+H  + ++      +
Sbjct: 519 SQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVY 578

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
            AS LV MYSKCGN+++S+ +F   P+ D V+W+++I  YA +G  ++A++ FE +    
Sbjct: 579 IASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLN 638

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +P+H +F+ VL AC H G VDKGL YF  ++  +GL    +HY+C+VDLL RS + +EA
Sbjct: 639 VKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEA 698

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +I  M  + D  +W +LL  C++ GN+++A++A  +L +++P++ + YV +AN+YA+ 
Sbjct: 699 LKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANV 758



 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 234/411 (56%), Gaps = 5/411 (1%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S ++Q C   +AL  GK+ H+ +  + F P ++++NCL+  Y K  N++ A  +FD M 
Sbjct: 9   FSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMP 68

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            RDV S+NTMI G+ + G++  A++LFD MP+RD  SW +++S Y+      ++++++  
Sbjct: 69  HRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 149 MQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M++ +  + + + T S VL A S I+   LG ++H   ++ GF++D V  SAL DMY KC
Sbjct: 129 MRSLK--IPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
             ++ A +IF +M +R++V W+A+I  Y Q  R  EG  LF +++K G+  +  T+A V 
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            +CA  +A +LG Q+HG+  +  +   S   +A + MY+KC  + ++ KVFN +P P   
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQ 306

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           S+ ++I GYA+     KALE F+ L ++    D I   G LTAC+      +G+Q  H +
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQ-LHGL 365

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             K GL +       I+D+  + G   EA  +   M  + D   W +++  
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAA 415



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 216/442 (48%), Gaps = 40/442 (9%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S S Y+S+ + C    A + G ++H H   S F     I    LDMYAKC  +SDA  +F
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVF 297

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           + +                               P     S+ A+I GY R +Q ++AL+
Sbjct: 298 NTL-------------------------------PNPPRQSYNAIIVGYARQDQGLKALE 326

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           +++ +Q    S  ++ +LS  L+A S I+    G ++HG  ++ G   +  V + + DMY
Sbjct: 327 IFQSLQRTYLSF-DEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMY 385

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
           GKCG++ EA  IFD M  RD VSW A+I  + Q     +  +LF  +++S + P+ FT+ 
Sbjct: 386 GKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYG 445

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            V+ ACA   A   G ++HG + + G     F  SALV MY KCG +  ++K+ + +   
Sbjct: 446 SVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEK 505

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
             VSW S+I+G++     + A  YF  +L+ G  PD+  +  VL  C +   ++ G Q  
Sbjct: 506 TTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIH 565

Query: 385 HSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             I +   L   +D Y  + +VD+ ++ G   ++  +  K P K D   W++++     H
Sbjct: 566 AQILK---LNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRDYVTWSAMICAYAYH 621

Query: 443 GNLDLAKRAAE--ALFEIEPEN 462
           G+ + A +  E   L  ++P +
Sbjct: 622 GHGEQAIKLFEEMQLLNVKPNH 643



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 201/390 (51%), Gaps = 8/390 (2%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E DV + + ++  ++K   L+ A  +F EMP+R+   W+A+I+GYV+ ++ IE L L++ 
Sbjct: 170 ENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKD 229

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M      VS   T +SV  + + +   +LG ++HG+ +++ F  D ++ +A  DMY KC 
Sbjct: 230 MLKVGMGVSQS-TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCD 288

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +++A ++F+ + +    S+ A+I  Y ++ +  +   +F  L ++ +  +  + +G L 
Sbjct: 289 RMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALT 348

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+       G Q+HG   + G       A+ ++ MY KCG +  +  +F+ M R D VS
Sbjct: 349 ACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVS 408

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI- 387
           W ++IA + QN    K L  F  +L+S  +PD   +  V+ AC     ++ G++    I 
Sbjct: 409 WNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIV 468

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K   GL +     + +VD+  + G   EAE +  ++  K     W S++ G       + 
Sbjct: 469 KSGMGLDWFVG--SALVDMYGKCGMLMEAEKIHDRLEEKT-TVSWNSIISGFSSQKQSEN 525

Query: 448 AKRAAEALFE--IEPENPATYVTMANIYAS 475
           A+R    + E  + P+N  TY T+ ++ A+
Sbjct: 526 AQRYFSQMLEMGVIPDN-FTYATVLDVCAN 554



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 141/317 (44%), Gaps = 36/317 (11%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           + KFT S +L   S ++ L  GK+ H  ++ T F     V + L   Y K  ++N A ++
Sbjct: 4   TKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKV 63

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFA-----------------LFSELIKSGIRPN 259
           FD+M  RDV+SW  MI  Y + G    GFA                 L S  + +G+   
Sbjct: 64  FDRMPHRDVISWNTMIFGYAEIGNM--GFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRK 121

Query: 260 AF----------------TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
           +                 TF+ VL AC+      LG QVH    ++G++      SALV 
Sbjct: 122 SIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MYSKC  ++ + ++F  MP  +LV W+++IAGY QN    + L+ F+ +LK G       
Sbjct: 182 MYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           +  V  +C        G Q  H    K    Y +      +D+ A+  R  +A  V + +
Sbjct: 242 YASVFRSCAGLSAFKLGTQ-LHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTL 300

Query: 424 PMKPDKFLWASLLGGCR 440
           P  P +   A ++G  R
Sbjct: 301 PNPPRQSYNAIIVGYAR 317


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 242/455 (53%), Gaps = 41/455 (9%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+   +  +++ C +  AL EG++VH  L   GF+   F+   L+DMY+  G + DA  
Sbjct: 133 RPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYK 192

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F EM ER+V ++ +MI+G+     L  AR LFD  P+RD   W  M+SGY+     +EA
Sbjct: 193 IFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEA 252

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             L+  M N                                         D + W+ +  
Sbjct: 253 RKLFHEMPN----------------------------------------RDVMFWNTVLK 272

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAF 261
            Y   G++     +F++M +R++ SW A+IG Y   G   E    F  ++ +S + PN  
Sbjct: 273 GYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDA 332

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   VL+ACA   A +LGK VH Y    G     +  +AL+ MY+KCG +EN+  VF GM
Sbjct: 333 TLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 392

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              DL+SW +LI G A +     AL  F  +  +G +PD I F+G+L ACTH GLV+ G 
Sbjct: 393 DTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGF 452

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
            YF S+ + + +    +HY C+VD+LAR+GR  +A   + KMP++ D  +WA LLG CRI
Sbjct: 453 AYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRI 512

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + N++LA+ A + L E+EP+NPA YV ++NIY  A
Sbjct: 513 YKNVELAELALQRLIELEPKNPANYVMLSNIYGDA 547



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 195/433 (45%), Gaps = 62/433 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + SL+Q C+ ++ + +   + + + ++GF+   +I+  L+ + A    ++ A+ LFD++ 
Sbjct: 41  FISLLQSCKTSKQVHQ---IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIP 97

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + ++  +N+M  G+ +  S  +   LF +M   D           +R             
Sbjct: 98  DPNIALWNSMFRGYAQSESYREVVFLFFQMKGMD-----------IR------------- 133

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    N FT   VL +   I  L  G+++H ++++ GF  +  V + L DMY   G
Sbjct: 134 --------PNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGG 185

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRY-----FQEGRREEGFALFSELIKSGIRPNAFTF 263
           ++ +A +IF +M +R+VV+WT+MI  Y         RR    A   +++   I  + +  
Sbjct: 186 TVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIE 245

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G +        E   + V  + T             ++  Y+  GNVE  + +F  MP 
Sbjct: 246 GGDMVEARKLFHEMPNRDVMFWNT-------------VLKGYATNGNVEALEGLFEEMPE 292

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
            ++ SW +LI GYA NG+  + L  F+ +L +S   P+    V VL+AC   G +D G +
Sbjct: 293 RNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG-K 351

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           + H   E  GL         ++D+ A+ G    A  V   M  K D   W +L+GG  +H
Sbjct: 352 WVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTK-DLISWNTLIGGLAMH 410

Query: 443 GNLDLAKRAAEAL 455
                  R A+AL
Sbjct: 411 ------SRGADAL 417



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 15/306 (4%)

Query: 169 VSAIQCLRLGKEIH---GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           +S +Q  +  K++H     I+  GF  +E +   L  +      +  ARQ+FD++ D ++
Sbjct: 42  ISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNI 101

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
             W +M   Y Q     E   LF ++    IRPN FTF  VL +C    A   G+QVH +
Sbjct: 102 ALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCF 161

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + + G+    F  + L+ MYS  G V ++ K+F  M   ++V+WTS+I GY  +     A
Sbjct: 162 LIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSA 221

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
              F+L      + D +++  +++     G + +  + FH +  +  + +       ++ 
Sbjct: 222 RRLFDL----APERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNT-----VLK 272

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG-NLDLAKRAAEALFEIE-PENP 463
             A +G     E +  +MP + + F W +L+GG   +G   ++       L E + P N 
Sbjct: 273 GYATNGNVEALEGLFEEMPER-NIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPND 331

Query: 464 ATYVTM 469
           AT VT+
Sbjct: 332 ATLVTV 337


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/497 (32%), Positives = 288/497 (57%), Gaps = 34/497 (6%)

Query: 12  KEALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +EAL++  +++  + +I  +++++ C +  AL+ GK++H+ +   G +    +++ L+++
Sbjct: 172 EEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNV 231

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           YAKCG++  A  + ++++E D  S + +ISG+   G + ++R LFD    R    W +MI
Sbjct: 232 YAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMI 291

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SGY+  N  +EAL L+  M+N   +  +  TL++V++A   +  L  GK++H +  + G 
Sbjct: 292 SGYIANNMKMEALVLFNEMRN--ETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGL 349

Query: 191 DSDEVVWSALSDMYGKCGS-------------------------------INEARQIFDK 219
             D VV S L DMY KCGS                               I++A+++F++
Sbjct: 350 IDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFER 409

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           + ++ ++SW +M   + Q G   E    F ++ K  +  +  + + V++ACA  ++ ELG
Sbjct: 410 IENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELG 469

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +QV    T +G D     +S+L+ +Y KCG VE+ ++VF+ M + D V W S+I+GYA N
Sbjct: 470 EQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATN 529

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G   +A++ F+ +  +G +P  I F+ VLTAC + GLV++G + F S+K  HG     +H
Sbjct: 530 GQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEH 589

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
           ++C+VDLLAR+G   EA +++ +MP   D  +W+S+L GC  +G   + K+AAE + E+E
Sbjct: 590 FSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELE 649

Query: 460 PENPATYVTMANIYASA 476
           PEN   YV ++ I+A++
Sbjct: 650 PENSVAYVQLSAIFATS 666



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 227/520 (43%), Gaps = 97/520 (18%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEM 87
           Y  L+Q C         ++ +  L   GF    V ++N LL MY++ G +  A+ LFDEM
Sbjct: 29  YVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEM 88

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            +R+  S+NTMI G+   G    +   FD MP+RD +SW  ++SG+ +  +   A  L+ 
Sbjct: 89  PDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFN 148

Query: 148 MMQNFE---------------------------NSVSNKFTLSSVLSAVSAIQCLRLGKE 180
            M   +                           N  ++  TL++VL A + ++ L+ GK+
Sbjct: 149 AMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQ 208

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGS------------------------------- 209
           IH  I+  G + D  + S+L ++Y KCG                                
Sbjct: 209 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGR 268

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +NE+R +FD+  +R V+ W +MI  Y     + E   LF+E+ ++  R ++ T A V+NA
Sbjct: 269 VNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEM-RNETREDSRTLAAVINA 327

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN------------------- 310
           C      E GKQ+H +  + G       AS L+ MYSKCG+                   
Sbjct: 328 CIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILL 387

Query: 311 ------------VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
                       ++++K+VF  +    L+SW S+  G++QNG   + LEYF  + K    
Sbjct: 388 NSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLP 447

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            D +    V++AC     ++ G Q F +     GL       + ++DL  + G       
Sbjct: 448 TDEVSLSSVISACASISSLELGEQVF-ARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGN----LDLAKRAAEA 454
           V   M +K D+  W S++ G   +G     +DL K+ + A
Sbjct: 507 VFDTM-VKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVA 545


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 277/475 (58%), Gaps = 21/475 (4%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           A Q+   I +     ++ ++    +N   EE  K+ S ++  GFKP  F        +A 
Sbjct: 199 ARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNF-------TFAS 251

Query: 74  CGNISDAQTLFDEMQERDVCSYNT-----------MISGFTKGGSLEQARNLFDEMPQRD 122
                    +F+  +    C++ T           +I  + K G ++ A  +F+EMP+ D
Sbjct: 252 VLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDD 311

Query: 123 NFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
              W+ MI+ Y +  Q  EA++++ RM +     + N+FTL+S+L A +++  L+LG +I
Sbjct: 312 VIPWSFMIARYAQSEQSEEAIEMFCRMRRGL--VLPNQFTLASLLQACASLVDLQLGNQI 369

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H ++++ G D +  V +AL DMY KCG +  + Q+F +  +   VSW  +I  Y Q G  
Sbjct: 370 HCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNG 429

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           E+   LF ++++  ++    T++ VL ACA  AA E G Q+H    +  YD  +   +AL
Sbjct: 430 EKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNAL 489

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + MY+KCGN+++++ VF+ +   D VSW ++I+GY+ +G+  +AL+ FE +L++  +PD 
Sbjct: 490 IDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDK 549

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           + FVG+L+AC++AGL+D+G  YF S+ E++ +   A+HY C+V LL RSG   +A  ++ 
Sbjct: 550 VTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVH 609

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++P +P   +W +LL  C IH +++L + +A+ + EIEPE+ AT+V ++NIYA+A
Sbjct: 610 EIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANA 664



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 207/431 (48%), Gaps = 40/431 (9%)

Query: 19  HQISHPSPS----IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
            + SH SP     IY SL+Q C +N     GK +H  +   G        NCL D++A  
Sbjct: 33  QRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKG--------NCL-DLFAN- 82

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
                                N +++ + K  SL  A  LFDEMP R+  S+  +I GY 
Sbjct: 83  ---------------------NILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYS 121

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +  +  EA+ L+  +Q  E    N F  S+VL  + + +  +LG  +H  + + GFDSD 
Sbjct: 122 QCLRFSEAIGLFSRLQG-EGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDA 180

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL D Y  CG    ARQ+FD +  +D+VSWT M+  Y +    EE   LFS +   
Sbjct: 181 FVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIV 240

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G +PN FTFA VL AC       +GK VHG   +  Y    F    L+ +Y K G+V+++
Sbjct: 241 GFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDA 300

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            +VF  MP+ D++ W+ +IA YAQ+   ++A+E F  + +    P+      +L AC  A
Sbjct: 301 LQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC--A 358

Query: 375 GLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            LVD  L    H    K GL         ++D+ A+ GR   +  + S+ P   D   W 
Sbjct: 359 SLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTD-VSWN 417

Query: 434 SLLGGCRIHGN 444
           +++ G    GN
Sbjct: 418 TVIVGYVQAGN 428


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/485 (35%), Positives = 261/485 (53%), Gaps = 72/485 (14%)

Query: 29   YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
            ++S +  C   +    G +VH+ +  S     V+I + LLDMYAKC              
Sbjct: 895  FASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCE------------- 941

Query: 89   ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EALDLYR 147
                                E+AR +F+ MP+R+  SW ++I+ Y   N P+ EAL L+ 
Sbjct: 942  ------------------WPEEARRVFEAMPERNIVSWNSLITCY-EQNGPVGEALVLFV 982

Query: 148  MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGK 206
             M      V ++ TL+SV+SA + +   R G+++H  ++++  F  D V+ +AL DMY K
Sbjct: 983  SMMK-AGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAK 1041

Query: 207  CGSINEARQIFDKM-------------------------------VDRDVVSWTAMIGRY 235
            CG    AR +FD+M                               V+++V++W  +I  Y
Sbjct: 1042 CGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAY 1101

Query: 236  FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY---- 291
             Q G  EE   LF  L +  + P  +T+  VLNAC + A  +LG+Q H ++ + G+    
Sbjct: 1102 AQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDF 1161

Query: 292  DPYS--FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
             P S  F  ++LV MY K G++++  KVF  M   D VSW ++I G+AQNG    AL  F
Sbjct: 1162 GPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLF 1221

Query: 350  ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
            E +L S   PD +  +GVL+AC H+GLV++G +YF S+ E HG+  + DHY C++DLL R
Sbjct: 1222 ERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGR 1281

Query: 410  SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
            +G   E E++I +M M+PD  LWASLLG CR+H N+++ + AA  LFE++P N   YV +
Sbjct: 1282 AGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLL 1341

Query: 470  ANIYA 474
            +N+YA
Sbjct: 1342 SNMYA 1346



 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 237/438 (54%), Gaps = 5/438 (1%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           CR N ALEEG+ +H+ +   G++  V + + ++DMYAKCG +  AQ+LF+    +D+   
Sbjct: 262 CRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMS 321

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            +++SG    G +  A+ +F+ M +R+  SW AM++GY+R      AL L++ M+  E  
Sbjct: 322 TSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQ-ETR 380

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             +  TL SVLSA + I  +  G+E+H + ++ GF S  ++ +AL  MY KCG +  A +
Sbjct: 381 EFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAER 440

Query: 216 I--FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           +  F+   +RD  SW ++I  Y +    E      +++ +S + PN  TF+  L ACA+ 
Sbjct: 441 LLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANI 499

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
              + G Q+H YM R GY+      S L+ MY KC   + S ++F   P  D++ W S+I
Sbjct: 500 FLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMI 559

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            G A +G  +  L+ F+ + K G + D + F+G L +C   G V  G  YF ++     +
Sbjct: 560 FGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYF-TLMMDESI 618

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
               +HY C+++LL + G   E ED +  MP +P   +W  +   CR +GN  L +RAA+
Sbjct: 619 IPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAK 678

Query: 454 ALFEIEPENPATYVTMAN 471
            + +  P  P  +V   +
Sbjct: 679 CINDSNPLTPVQFVATVD 696



 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 230/461 (49%), Gaps = 47/461 (10%)

Query: 55   SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
            S F    F+ N L+  YA+ G + DA+ +FDE+   +  SYN ++S   + G    AR L
Sbjct: 789  SPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARAL 848

Query: 115  FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
            F  +P  D  S+ A+I+   ++++  +AL L+    + ++ V N ++ +S LSA +A + 
Sbjct: 849  FHAIPDPDQCSYNAVIAALAQHSRGADAL-LFLAAMHADDFVLNAYSFASALSACAAEKD 907

Query: 175  LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
             R G ++H  + ++    D  + SAL DMY KC    EAR++F+ M +R++VSW ++I  
Sbjct: 908  SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITC 967

Query: 235  YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDP 293
            Y Q G   E   LF  ++K+G  P+  T A V++ACA  AA+  G+QVH  + +   +  
Sbjct: 968  YEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFRE 1027

Query: 294  YSFAASALVHMYSKCG-------------------------------NVENSKKVFNGMP 322
                ++ALV MY+KCG                               NVE+++ VF+ M 
Sbjct: 1028 DMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMV 1087

Query: 323  RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              ++++W  LIA YAQNG  ++AL  F  L +    P H  +  VL AC +   +  G Q
Sbjct: 1088 EKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQ 1147

Query: 383  -YFHSIKEKHGLTY--TADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             + H +KE     +   +D +    +VD+  ++G   +   V  +M  + D   W +++ 
Sbjct: 1148 AHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAAR-DNVSWNAMIV 1206

Query: 438  GCRIHGNLDLAKRAAEALFE---IEPENPATYVTMANIYAS 475
            G   H     AK A   LFE      E+P + VTM  + ++
Sbjct: 1207 G---HAQNGRAKDALH-LFERMLCSKESPDS-VTMIGVLSA 1242



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 207/416 (49%), Gaps = 43/416 (10%)

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
           +N  I      GS+  AR LFD MP RD  SW A+I+   R   P EAL L+  M +   
Sbjct: 88  FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147

Query: 155 SVSNKFTLSSVLSAVSAIQCLRL--GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
              +  T++SVLS  +  +CL L   +++HG+I +  F S+ ++ +AL D+YG C  + +
Sbjct: 148 RPKDA-TMASVLSCCA--ECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           AR+ FD +++ + +SW  ++ RY   G  +    +F  ++ +G+RP  +T +  + AC D
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK------------------------- 307
           + A E G+ +H ++ R GY+ +    S++V MY+K                         
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSI 324

Query: 308 ------CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
                 CG + ++K+VF GM   +LVSW +++ GY ++     AL  F+ + +   + D 
Sbjct: 325 VSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDA 384

Query: 362 IVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           I    VL+ACT  G++D G  +  H+   K G   +      +V + ++ G    AE ++
Sbjct: 385 ITLGSVLSACT--GILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLL 442

Query: 421 S-KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             +M  + D + W SL+ G   H    +++ A  AL +++ E      T ++  A+
Sbjct: 443 LFEMGSERDSYSWNSLISGYERH---SMSEAALYALTKMQSEVTPNQSTFSSALAA 495



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 207/468 (44%), Gaps = 72/468 (15%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +   ++     P  +  +S++  C +   L   +++H H+    F+  V +   L+
Sbjct: 134 EALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALV 193

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           D+Y  C  ++DA+  FD++ E +  S+N ++  +   G  + A ++F             
Sbjct: 194 DVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFR----------- 242

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           M+S  VR   P+                   +T+S  + A      L  G+ IH +++R 
Sbjct: 243 MLSAGVR---PL------------------GYTVSHAVLACRDNNALEEGRCIHAFVLRH 281

Query: 189 GFDSDEVVWSALSDMYGKCGS-------------------------------INEARQIF 217
           G++    V S++ DMY KCG+                               I +A+++F
Sbjct: 282 GYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVF 341

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           + M +R++VSW AM+  Y +         LF ++ +     +A T   VL+AC       
Sbjct: 342 EGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIG 401

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK--VFNGMPRPDLVSWTSLIAG 335
            G++VH +  + G+       +ALV MYSKCG + ++++  +F      D  SW SLI+G
Sbjct: 402 KGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISG 461

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y ++ M + AL Y    ++S   P+   F   L AC +  L+ +G+Q  H+   + G   
Sbjct: 462 YERHSMSEAAL-YALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQ-IHAYMIRKGYEI 519

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                + ++D+  +  +F  +  +    P + D  LW S++ GC   G
Sbjct: 520 DDILRSVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGCAYSG 566



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 56/240 (23%)

Query: 12   KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK------PGV 61
            +EAL++  ++      P+   Y +++  C     L+ G++ H H+   GF+        V
Sbjct: 1108 EEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDV 1167

Query: 62   FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            F+ N L+DMY K G+I D   +F+ M  RD  S+N MI G  + G  + A +LF+     
Sbjct: 1168 FVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFE----- 1222

Query: 122  DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK-- 179
                                     RM+ + E+   +  T+  VLSA      +  G+  
Sbjct: 1223 -------------------------RMLCSKES--PDSVTMIGVLSACGHSGLVEEGRRY 1255

Query: 180  -----EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
                 E HG I        +  ++ + D+ G+ G + E  ++  +M ++ D V W +++G
Sbjct: 1256 FRSMTEDHGII------PSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLG 1309



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           AL  +     P+ S +SS +  C     L++G ++H+++   G++    + + L+DMY K
Sbjct: 474 ALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCK 533

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           C     +  +F+    RDV  +N+MI G    G  E   +LFDEM ++
Sbjct: 534 CRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQ 581



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%)

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           +F  +  +   + CG+V +++++F+ MP  D  SW ++I   ++ G P +AL  F  +  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 355 SGTQPDHIVFVGVLTACT 372
            G +P       VL+ C 
Sbjct: 145 LGIRPKDATMASVLSCCA 162


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/474 (35%), Positives = 263/474 (55%), Gaps = 6/474 (1%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           Q+ L    Q++ +   P    Y S+++ C +   L  GK+VH  + +S  K  + + N L
Sbjct: 183 QKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNAL 242

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN---- 123
           + MY KCG +  A+ LFD++ ERD  S+N+MIS +   G   +A  LF  M   D     
Sbjct: 243 ISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNI 302

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
             W  +  GY+R      AL+L   M+   + + +   L   L A S I   +LGKEIH 
Sbjct: 303 IIWNTIAGGYLRTGNYKGALELLSQMRKCGSHL-DSVALIIGLGACSHIGDAKLGKEIHS 361

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           + +R+ F   + V +AL  MY +C  +  A  +F  M  + +++W ++I       R EE
Sbjct: 362 FAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEE 421

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALV 302
              L  E++  GI PN  T A VL  CA  A  + GK+ H YMTR   +  +    +ALV
Sbjct: 422 ASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALV 481

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY++ G V  +++VF+ +   D +++TS+IAGY   G    AL+ FE +     +PDHI
Sbjct: 482 DMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI 541

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
             + VL+AC+H+GLV +G   F  ++  +GLT   +H+AC+ DL  R+G  ++A+++I  
Sbjct: 542 TMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRN 601

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           MP KP   +WA+L+G CRIH N ++ + AAE L E++PENP  YV +AN+YA+A
Sbjct: 602 MPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAA 655



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 207/492 (42%), Gaps = 78/492 (15%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           I HP     SSL+  C   ++L EG+++H H+ S GF+    +   L+  Y+    + DA
Sbjct: 99  IVHP----ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDA 154

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
             + +         +N +IS + + G  ++A + + +M ++            +R     
Sbjct: 155 HVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKG-----------IR----- 198

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
                            + FT  SVL A      L  GKE+H  I  +      +V +AL
Sbjct: 199 ----------------PDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNAL 242

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MYGKCG +  AR +FDK+ +RD VSW +MI  Y   G   E F LF  +    I  N 
Sbjct: 243 ISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNI 302

Query: 261 FTFAGV-----------------------------------LNACADHAAEELGKQVHGY 285
             +  +                                   L AC+     +LGK++H +
Sbjct: 303 IIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSF 362

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
             R  +       +AL+ MYS+C +++++  +F  M    L++W S+I+G       ++A
Sbjct: 363 AIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEA 422

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
                 +L  G +P+++    VL  C     +  G ++   +  +         +  +VD
Sbjct: 423 SFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVD 482

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL--FEIEPENP 463
           + ARSG+  EA  V   M  + DK  + S++ G  + G    A +  E +  F+I+P+  
Sbjct: 483 MYARSGKVLEARRVFD-MLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPD-- 539

Query: 464 ATYVTMANIYAS 475
             ++TM  + ++
Sbjct: 540 --HITMIAVLSA 549


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 252/456 (55%), Gaps = 39/456 (8%)

Query: 25  SPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           SP  Y+   L++ C Q+ A  E  ++H+H   +G    +F+ N L+  YA          
Sbjct: 135 SPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYA---------- 184

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                           +SGF     +E    +FD+ P  D  SWT +I  Y +   P EA
Sbjct: 185 ----------------VSGF-----IEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEA 223

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD--SDEVVWSAL 200
           +  +  M    N  +++ TL  VLSA S +    LGK+I  Y+    FD  SD  + +AL
Sbjct: 224 IAAFFRM----NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNAL 279

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            DMY KCG  + ARQ+F  M  +++VSW +MI     +G  +E   +F  +   G++P++
Sbjct: 280 LDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDS 339

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T  GVLN+CA+    ELGK VH Y+ +       + A+ALV MY+KCG+++ +  VF  
Sbjct: 340 VTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQA 399

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   D+ S+T++I G+A +G  D+AL  F  + + G +PDH+  VGVL+AC+HAGL+++G
Sbjct: 400 MKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEG 459

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            ++F  +   + L    +HY C+VDLL R+G   EAE   +KMP+ PD  +W SLLG C+
Sbjct: 460 RRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACK 519

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           IH  ++L +   + L E+EPE    Y+ M+NIY+SA
Sbjct: 520 IHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSA 555


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 250/453 (55%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + S++  C    AL  GK VH+   ++G    + ++  L+ MY  CG        
Sbjct: 257 PNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCG-------- 308

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  S+E AR +FD M  RD  SWT MI GY       +A 
Sbjct: 309 -----------------------SIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAF 345

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  MQ  E    ++ T   +++A +    L   +EIH  +   GF +D +V +AL  M
Sbjct: 346 GLFATMQE-EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHM 404

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG+I +ARQ+FD M  RDVVSW+AMIG Y + G   E F  F  + +S I P+  T+
Sbjct: 405 YAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTY 464

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +LNAC    A ++G +++    +     +    +AL+ M +K G+VE ++ +F+ M R
Sbjct: 465 INLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVR 524

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+++W ++I GY+ +G   +AL  F+ +LK   +P+ + FVGVL+AC+ AG VD+G ++
Sbjct: 525 RDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRF 584

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  + E  G+  T   Y C+VDLL R+G   EAE +I  MP+KP   +W+SLL  CRIHG
Sbjct: 585 FTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHG 644

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           NLD+A+RAAE    I+P + A YV ++++YA+A
Sbjct: 645 NLDVAERAAERCLMIDPYDGAVYVQLSHMYAAA 677



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 227/450 (50%), Gaps = 44/450 (9%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +KEA  +  Q+      PS   + S++  C     L  GK+VH+ + ++GF     I   
Sbjct: 139 VKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTA 198

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MY                                KGGS++ AR +FD +  RD  ++
Sbjct: 199 LVSMY-------------------------------VKGGSMDDARQVFDGLHIRDVSTF 227

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             M+ GY +     +A +L+  MQ       NK +  S+L      + L  GK +H   M
Sbjct: 228 NVMVGGYAKSGDWEKAFELFYRMQQV-GLKPNKISFLSILDGCWTPEALAWGKAVHAQCM 286

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G   D  V ++L  MY  CGSI  AR++FD M  RDVVSWT MI  Y + G  E+ F 
Sbjct: 287 NAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFG 346

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF+ + + GI+P+  T+  ++NACA  A     +++H  +   G+      ++ALVHMY+
Sbjct: 347 LFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYA 406

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG ++++++VF+ MPR D+VSW+++I  Y +NG   +A E F L+ +S  +PD + ++ 
Sbjct: 407 KCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYIN 466

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC H G +D G++ +    +   +++     A I+ + A+ G    A  +   M ++
Sbjct: 467 LLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALII-MNAKHGSVERARYIFDTM-VR 524

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
            D   W +++GG  +HGN      A EAL+
Sbjct: 525 RDVITWNAMIGGYSLHGN------AREALY 548



 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/459 (29%), Positives = 220/459 (47%), Gaps = 51/459 (11%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           +H     Y  L Q C + R    GK+V  H+   G +  ++  N L+ +Y+ CGN++   
Sbjct: 53  NHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVT--- 109

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                       +AR +FD +  +   +W A+I+GY +     E
Sbjct: 110 ----------------------------EARQIFDSVENKTVVTWNALIAGYAQVGHVKE 141

Query: 142 ALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           A  L+R M  +  E S+    T  SVL A S+   L  GKE+H  ++  GF SD  + +A
Sbjct: 142 AFALFRQMVDEGLEPSI---ITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTA 198

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY K GS+++ARQ+FD +  RDV ++  M+G Y + G  E+ F LF  + + G++PN
Sbjct: 199 LVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPN 258

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             +F  +L+ C    A   GK VH      G       A++L+ MY+ CG++E +++VF+
Sbjct: 259 KISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFD 318

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D+VSWT +I GYA+NG  + A   F  + + G QPD I ++ ++ AC  +  ++ 
Sbjct: 319 NMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNH 378

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG-- 437
             +  HS  +  G          +V + A+ G   +A  V   MP + D   W++++G  
Sbjct: 379 ARE-IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGAY 436

Query: 438 -----GCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
                G        L KR+      IEP+   TY+ + N
Sbjct: 437 VENGYGTEAFETFHLMKRS-----NIEPDG-VTYINLLN 469



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 177/352 (50%), Gaps = 44/352 (12%)

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           + + + A D+ + +    N + ++ T   +    + ++   LGK++  +I++ G   +  
Sbjct: 35  FTRRVGANDVLQRLGEGGNHIDSR-TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIY 93

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
             + L  +Y  CG++ EARQIFD + ++ VV+W A+I  Y Q G  +E FALF +++  G
Sbjct: 94  ELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEG 153

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           + P+  TF  VL+AC+  A    GK+VH  +   G+       +ALV MY K G++++++
Sbjct: 154 LEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDAR 213

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA----- 370
           +VF+G+   D+ ++  ++ GYA++G  +KA E F  + + G +P+ I F+ +L       
Sbjct: 214 QVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPE 273

Query: 371 -----------CTHAGLVDK-------------------GLQYFHSIKEKHGLTYTADHY 400
                      C +AGLVD                      + F ++K +  +++T    
Sbjct: 274 ALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTV--- 330

Query: 401 ACIVDLLARSGRFHEAEDVISKMP---MKPDKFLWASLLGGCRIHGNLDLAK 449
             +++  A +G   +A  + + M    ++PD+  +  ++  C I  NL+ A+
Sbjct: 331 --MIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR 380



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 116/311 (37%), Gaps = 74/311 (23%)

Query: 13  EALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA +  H +      P    Y +L+  C    AL+ G ++++    +     V + N L+
Sbjct: 444 EAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALI 503

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            M AK G++  A+ +FD M  RDV ++N MI G++  G+  +A  LFD M +        
Sbjct: 504 IMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLK-------- 555

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR- 187
                                   E    N  T   VLSA S    +  G+    Y++  
Sbjct: 556 ------------------------ERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEG 591

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G      ++  + D+ G+ G ++EA  +   M                           
Sbjct: 592 RGIVPTVKLYGCMVDLLGRAGELDEAELLIKSM--------------------------- 624

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA-LVHMYS 306
                   ++P +  ++ +L AC  H   ++ ++       I  DPY  A    L HMY+
Sbjct: 625 -------PVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMI--DPYDGAVYVQLSHMYA 675

Query: 307 KCGNVENSKKV 317
             G  EN  KV
Sbjct: 676 AAGMWENVAKV 686


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 245/454 (53%), Gaps = 34/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y  L   C    A+E G+  H  +   G      +S+ L+ MYA+CG + DA   
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDA--- 181

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                       R +FDE+ Q+D  SW +MISGY +     EA+
Sbjct: 182 ----------------------------RKVFDEISQKDLVSWNSMISGYSKMRHAGEAV 213

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+R M        N+ +L SVL A   +  L+LG  +  +++      +  + SAL  M
Sbjct: 214 GLFREMME-AGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHM 272

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG +  AR+IFD M  +D V+W AMI  Y Q G  EE   LF ++  S   P+  T 
Sbjct: 273 YGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G+L+ACA   A +LGKQV  Y +  G+    +  +ALV MY+KCG+++N+ +VF GMP+
Sbjct: 333 IGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPK 392

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGL 381
            + VSW ++I+  A +G   +AL  F+ ++  G    P+ I FVGVL+AC HAGLVD+G 
Sbjct: 393 KNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGR 452

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + FH +    GL    +HY+C+VDL +R+G   EA D +  MP KPD+ +  +LLG C+ 
Sbjct: 453 RLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQK 512

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             N+D+++R  + L E+EP N   YV  + +YA+
Sbjct: 513 RKNIDISERVMKLLLELEPSNSGNYVISSKLYAN 546



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 211/445 (47%), Gaps = 56/445 (12%)

Query: 22  SHPSPS------IYSSLIQFCRQNRALEEGKKVHSHLKSSGF-KPGVFISNCLLDMYAKC 74
           S P+P+       ++SL+Q C   + L   K++H+ L ++   KP     N  L   A  
Sbjct: 22  SKPNPNRQALSDKFNSLLQQCLSIKQL---KQIHAQLLTNSIHKP-----NSFLYKIADL 73

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
            + + A   F  + +    S+N MI G +                               
Sbjct: 74  KDFAYASVFFSNILDPTEYSFNVMIRGLSTA----------------------------- 104

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
            +N+   AL+ Y  M+ F     N  T   +  A S +  +  G+  H  ++R G D D 
Sbjct: 105 -WNKSSLALEFYSRMK-FLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDG 162

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V  +L  MY +CG + +AR++FD++  +D+VSW +MI  Y +     E   LF E++++
Sbjct: 163 HVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEA 222

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G +PN  +   VL AC +    +LG  V  ++         F  SAL+HMY KCG++ ++
Sbjct: 223 GFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSA 282

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +++F+ M + D V+W ++I GYAQNGM ++A++ F+ +  S T PD I  +G+L+AC   
Sbjct: 283 RRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASI 342

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           G +D G Q      E+    +  D Y    +VD+ A+ G    A  V   MP K ++  W
Sbjct: 343 GALDLGKQVEIYASER---GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMP-KKNEVSW 398

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFE 457
            +++     HG      + A ALF+
Sbjct: 399 NAMISALAFHGQ----AQEALALFK 419


>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
 gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
          Length = 592

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 252/456 (55%), Gaps = 40/456 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+++++ C ++R LE+G++VH+ +  SG     F+ N L+ MY  CG             
Sbjct: 15  YATILRKCARSRLLEDGRRVHARIIHSGHTRDRFLGNLLVQMYRDCGR------------ 62

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                              LE AR +FD MP R+ FSW  +IS YV   +  EAL LYR 
Sbjct: 63  -------------------LEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRA 103

Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           +      +  + F  SS L+A + ++CL  G EIH  I++ G   D  + +AL  MY KC
Sbjct: 104 LVRSSTEIQPDAFIFSSALAACARLKCLEQGLEIHEQIVKRGIKQDVGLQNALVTMYAKC 163

Query: 208 GSINEARQIFDKMVDRDVV--SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           G I+ A+Q+FD++  RDVV  SW AMI  + Q GR ++   LF  +   G++P+  T+  
Sbjct: 164 GRIDRAKQVFDRITHRDVVVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCS 223

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL+ACA+  A  LG+ +   M        S A S + +MY KCG  E +++ F  M   D
Sbjct: 224 VLDACANLTASSLGRIICDGMDEALAKDISVANS-ICNMYGKCGLPELARQTFLEMTYRD 282

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSWT++IA YAQNG   +AL+ F +++++G +P+ I  +  L+AC+H  L D+G   F 
Sbjct: 283 VVSWTAIIAAYAQNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDIFS 342

Query: 386 SI--KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           S+   + +G+T    H+ C +DLL R+G   +AE +I+KMP K     W SLL  CR   
Sbjct: 343 SLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLLSACRTFR 402

Query: 444 NLDLAKRAAEALFEIEP---ENPATYVTMANIYASA 476
           +L  A R A  LFE++    ++PA YV ++NIYASA
Sbjct: 403 DLKRAGRVANHLFELDESSIKDPAPYVMLSNIYASA 438



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 165/348 (47%), Gaps = 53/348 (15%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P   I+SS +  C + + LE+G ++H  +   G K  V + N L+ MYAKCG I  A+ 
Sbjct: 112 QPDAFIFSSALAACARLKCLEQGLEIHEQIVKRGIKQDVGLQNALVTMYAKCGRIDRAKQ 171

Query: 83  LFDEMQERDVC--SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           +FD +  RDV   S+N MI+GF + G                               +P 
Sbjct: 172 VFDRITHRDVVVISWNAMIAGFGQNG-------------------------------RPK 200

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           +AL+L+R M + E    ++ T  SVL A + +    LG+ I    M      D  V +++
Sbjct: 201 QALELFRRM-DLEGLQPSRMTYCSVLDACANLTASSLGRIICDG-MDEALAKDISVANSI 258

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            +MYGKCG    ARQ F +M  RDVVSWTA+I  Y Q G   E   +F  ++++G+ PN 
Sbjct: 259 CNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYAQNGYSSEALDIFRIMVQAGVEPNG 318

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS-----ALVHMYSKCGNVENSK 315
            T    L+AC+  A  + G  +  + + +  D Y   A+       + +  + G +++++
Sbjct: 319 ITLINTLSACSHGALFDEGSDI--FSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAE 376

Query: 316 KVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            +   MP +   V+WTSL++          A   F  L ++G   +H+
Sbjct: 377 TLITKMPFKAGAVAWTSLLS----------ACRTFRDLKRAGRVANHL 414



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 17/282 (6%)

Query: 10  RLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           R+  A Q+  +I+H    +  ++++I    QN   ++  ++   +   G +P       +
Sbjct: 165 RIDRAKQVFDRITHRDVVVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSV 224

Query: 68  LDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           LD  A     S  + + D M E   +D+   N++ + + K G  E AR  F EM  RD  
Sbjct: 225 LDACANLTASSLGRIICDGMDEALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVV 284

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWTA+I+ Y +     EALD++R+M        N  TL + LSA S       G +I   
Sbjct: 285 SWTAIIAAYAQNGYSSEALDIFRIMVQ-AGVEPNGITLINTLSACSHGALFDEGSDIFSS 343

Query: 185 IMRT---GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG--RYFQE 238
           ++     G  ++E  +    D+ G+ G + +A  +  KM      V+WT+++   R F++
Sbjct: 344 LVSGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLLSACRTFRD 403

Query: 239 GRREEGFA--LFSELIKSGIRPNA--FTFAGVLNACADHAAE 276
            +R    A  LF EL +S I+  A     + +  +  D AAE
Sbjct: 404 LKRAGRVANHLF-ELDESSIKDPAPYVMLSNIYASAGDRAAE 444


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 250/450 (55%), Gaps = 42/450 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG--NISDAQTLFDE 86
           Y  L++ C     +   + +H+ ++  GF   +F+ N L+D Y KCG   ++ A+ +F+ 
Sbjct: 118 YPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEV 177

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M ERD  S+N+MI G  K G L +AR LFDEMP+RD  SW  ++ GYV+  +   A +L+
Sbjct: 178 MAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELF 237

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M    N VS                                       WS +   Y K
Sbjct: 238 EKMPA-RNVVS---------------------------------------WSTMVLGYSK 257

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G ++ AR +FDKM  +++V WT MI  Y ++G  ++   L++++ ++G++ +  T   +
Sbjct: 258 AGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISI 317

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+ACA      LGK+VH  + R  +   +  ++AL+ MY+KCG++EN+  +F+GM R D+
Sbjct: 318 LSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDV 377

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSW ++I G A +G  +KAL+ F  +   G  PD + FVGVL ACTHAG VD+GL YFH+
Sbjct: 378 VSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHA 437

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           ++  +G+    +HY C+VDLL R GR  EA  ++  MP++P+  +W +LLG CR+H    
Sbjct: 438 MERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATG 497

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA+   + L + E  +      ++NIYA+A
Sbjct: 498 LAEEVFDRLVKSELSDSGNLSMLSNIYAAA 527



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 192/406 (47%), Gaps = 44/406 (10%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           +L + K++H+ +  +      F+   L+  ++ C  ++ A  +F+++Q+ DV  YNT   
Sbjct: 29  SLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNT--- 85

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
                                       +I  +VR ++P+ A  ++  MQ+     ++ F
Sbjct: 86  ----------------------------LIRAHVRNSEPLLAFSVFFEMQD-SGVCADNF 116

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG--SINEARQIFD 218
           T   +L A S    +R+ + IH  + + GF  D  V ++L D Y KCG   +  AR++F+
Sbjct: 117 TYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFE 176

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            M +RD VSW +MIG   + G   E   LF E+ +           G + A   +AA EL
Sbjct: 177 VMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFEL 236

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            +++              + S +V  YSK G+++ ++ +F+ MP  +LV WT +I+GYA+
Sbjct: 237 FEKMPARNV--------VSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAE 288

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G+   A+  +  + ++G + D    + +L+AC  +GL+  G +  H+  E+     +  
Sbjct: 289 KGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLG-KRVHASIERTRFKCSTP 347

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               ++D+ A+ G    A  +   M ++ D   W +++ G  +HG+
Sbjct: 348 VSNALIDMYAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHGH 392



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 131/285 (45%), Gaps = 12/285 (4%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           VS +  L   +S +     L   K+IH  +++     +  V   L   +  C  +  A  
Sbjct: 11  VSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVN 70

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+++ D DV+ +  +I  + +       F++F E+  SG+  + FT+  +L AC+    
Sbjct: 71  VFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVW 130

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG--NVENSKKVFNGMPRPDLVSWTSLI 333
             + + +H  + ++G+    F  ++L+  Y KCG   V  ++KVF  M   D VSW S+I
Sbjct: 131 VRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMI 190

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            G  + G   +A   F+ +     + D + +  +L     AG ++   + F  +  ++ +
Sbjct: 191 GGLVKVGELGEARRLFDEM----PERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVV 246

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +++      +V   +++G    A  +  KMP+K +   W  ++ G
Sbjct: 247 SWST-----MVLGYSKAGDMDMARILFDKMPVK-NLVPWTIMISG 285


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/454 (38%), Positives = 265/454 (58%), Gaps = 48/454 (10%)

Query: 63  ISNCLLDMYAKCGN----ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           +SN L+ +Y+KC +    +  A+ +FDE+ E+D  S+ TM++G+ K G  +    L + M
Sbjct: 186 VSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245

Query: 119 PQRDNF---SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
              DN    ++ AMISGYV      EAL++ R M +    + ++FT  SV+ A +    L
Sbjct: 246 D--DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL-DEFTYPSVIRACATAGLL 302

Query: 176 RLGKEIHGYIMRT---GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
           +LGK++H Y++R     F  D    ++L  +Y KCG  +EAR IF+KM  +D+VSW A++
Sbjct: 303 QLGKQVHAYVLRREDFSFHFD----NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALL 358

Query: 233 GRY------------FQE-------------------GRREEGFALFSELIKSGIRPNAF 261
             Y            F+E                   G  EEG  LFS + + G  P  +
Sbjct: 359 SGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY 418

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
            F+G + +CA   A   G+Q H  + +IG+D    A +AL+ MY+KCG VE +++VF  M
Sbjct: 419 AFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P  D VSW +LIA   Q+G   +A++ +E +LK G +PD I  + VLTAC+HAGLVD+G 
Sbjct: 479 PCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGR 538

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           +YF S++  + +   ADHYA ++DLL RSG+F +AE VI  +P KP   +W +LL GCR+
Sbjct: 539 KYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRV 598

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           HGN++L   AA+ LF + PE+  TY+ ++N++A+
Sbjct: 599 HGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAA 632



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 234/506 (46%), Gaps = 93/506 (18%)

Query: 23  HPSPSI-------YSSLIQFCRQNR--ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
            P+P +       Y++ ++ C   R  +L+  + VH ++ + GF+P   I N L+D+Y K
Sbjct: 2   QPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCK 61

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMIS 131
              ++ A+ LFDE+ E D  +  TM+SG+   G +  AR +F++ P   RD   + AMI+
Sbjct: 62  SSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMIT 121

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI-----QCLRLGKEIHGYIM 186
           G+   N    A++L+  M++ E    + FT +SVL+ ++ +     QC+    + H   +
Sbjct: 122 GFSHNNDGYSAINLFCKMKH-EGFKPDNFTFASVLAGLALVADDEKQCV----QFHAAAL 176

Query: 187 RTGFDSDEVVWSALSDMYGKCGS----INEARQIFDKMVDRDVVSWT------------- 229
           ++G      V +AL  +Y KC S    ++ AR++FD+++++D  SWT             
Sbjct: 177 KSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFD 236

Query: 230 -------------------AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
                              AMI  Y   G  +E   +   ++ SGI  + FT+  V+ AC
Sbjct: 237 LGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRAC 296

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           A     +LGKQVH Y+ R   + +SF   ++LV +Y KCG  + ++ +F  MP  DLVSW
Sbjct: 297 ATAGLLQLGKQVHAYVLR--REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSW 354

Query: 330 TSLIAGY-------------------------------AQNGMPDKALEYFELLLKSGTQ 358
            +L++GY                               A+NG  ++ L+ F  + + G +
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P    F G + +C   G    G QY H+   K G   +      ++ + A+ G   EA  
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQY-HAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQ 473

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGN 444
           V   MP   D   W +L+     HG+
Sbjct: 474 VFRTMPCL-DSVSWNALIAALGQHGH 498



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 173/345 (50%), Gaps = 18/345 (5%)

Query: 7   NQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGV 61
           N+   +EAL+++ ++      +    Y S+I+ C     L+ GK+VH++ L+   F    
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS--F 320

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
              N L+ +Y KCG   +A+ +F++M  +D+ S+N ++SG+   G + +A+ +F EM ++
Sbjct: 321 HFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEK 380

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           +  SW  MISG        E L L+  M+  E      +  S  + + + +     G++ 
Sbjct: 381 NILSWMIMISGLAENGFGEEGLKLFSCMKR-EGFEPCDYAFSGAIKSCAVLGAYCNGQQY 439

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  +++ GFDS     +AL  MY KCG + EARQ+F  M   D VSW A+I    Q G  
Sbjct: 440 HAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHG 499

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-----GYDPYSF 296
            E   ++ E++K GIRP+  T   VL AC+     + G++    M  +     G D Y  
Sbjct: 500 AEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY-- 557

Query: 297 AASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
             + L+ +  + G   +++ V   +P +P    W +L++G   +G
Sbjct: 558 --ARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHG 600


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 253/456 (55%), Gaps = 43/456 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN--ISDAQ 81
           P    Y  L++ C    +L   + +H+H++  GF   +F+ N L+D Y++CG+  +  A 
Sbjct: 118 PDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAM 177

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
           +LF  M+ERDV ++N+MI G  + G LE A  LFDEMP+RD  SW  M+ GY +  +   
Sbjct: 178 SLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDR 237

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A +L+  M    N VS                                       WS + 
Sbjct: 238 AFELFERMPQ-RNIVS---------------------------------------WSTMV 257

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
             Y K G ++ AR +FD+   ++VV WT +I  Y ++G   E   L+ ++ ++G+RP+  
Sbjct: 258 CGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDG 317

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
               +L ACA+     LGK++H  M R  +   +   +A + MY+KCG ++ +  VF+GM
Sbjct: 318 FLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGM 377

Query: 322 -PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
             + D+VSW S+I G+A +G  +KALE F  ++  G +PD   FVG+L ACTHAGLV++G
Sbjct: 378 MAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEG 437

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            +YF+S+++ +G+    +HY C++DLL R G   EA  ++  MPM+P+  +  +LL  CR
Sbjct: 438 RKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACR 497

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +H ++D A+   E LF++EP +P  Y  ++NIYA A
Sbjct: 498 MHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQA 533



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN- 339
           Q+H  + +       F A  L+  +S C ++ ++  VFN +P P++  + S+I  +A N 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNT 98

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
             P      F  + K+G  PD+  +  +L ACT    +   ++  H+  EK G       
Sbjct: 99  SHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPL-VRMIHAHVEKFGFYGDIFV 157

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
              ++D  +R G       +   + MK  D   W S++GG    G L+     A  LF+ 
Sbjct: 158 PNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELE----GACKLFDE 213

Query: 459 EPE-NPATYVTMANIYASA 476
            PE +  ++ TM + YA A
Sbjct: 214 MPERDMVSWNTMLDGYAKA 232


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 284/510 (55%), Gaps = 50/510 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A    H   +P+   Y++LI    ++  +   ++V   +     +P +   N L+  
Sbjct: 60  LHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIP----QPDIVSYNTLIAA 115

Query: 71  YAKCGNISDAQTLFDEMQERD------------------------------VCSY----- 95
           YA  G       LF+E++E                                VC +     
Sbjct: 116 YADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYAS 175

Query: 96  --NTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
             N +++ +++ G L +AR +F EM +   RD  SW AMI    ++ + +EA+ L+R M 
Sbjct: 176 VNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMV 235

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC-GS 209
                V + FT++SVL+A + ++ L  G++ HG ++++GF  +  V S L D+Y KC GS
Sbjct: 236 RRGLKV-DMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGS 294

Query: 210 INEARQIFDKMVDRDVVSWTAMI-GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           + E R++F+++   D+V W  MI G    E   E+G   F E+ ++G RP+  +F  V +
Sbjct: 295 MVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTS 354

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAA--SALVHMYSKCGNVENSKKVFNGMPRPDL 326
           AC++ ++  LGKQVH    +    PY+  +  +ALV MYSKCGNV ++++VF+ MP  + 
Sbjct: 355 ACSNLSSPSLGKQVHALAIKSDV-PYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNT 413

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VS  S+IAGYAQ+G+  ++L  FEL+L+    P+ I F+ VL+AC H G V++G +YF+ 
Sbjct: 414 VSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNM 473

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +KE+  +   A+HY+C++DLL R+G+  EAE +I  MP  P    WA+LLG CR HGN++
Sbjct: 474 MKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVE 533

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA +AA     +EP N A YV ++N+YASA
Sbjct: 534 LAVKAANEFLRLEPYNAAPYVMLSNMYASA 563



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 233/459 (50%), Gaps = 15/459 (3%)

Query: 20  QISHP-SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           Q ++P     + +L++ C   R L  GK +H+    S   P  ++SN    +Y+KCG++ 
Sbjct: 2   QCTYPLQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLH 61

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           +AQT F   Q  +V SYNT+I+ + K   +  AR +FDE+PQ D  S+  +I+ Y    +
Sbjct: 62  NAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGE 121

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
               L L+  ++     + + FTLS V++A      + L +++H +++  G D    V +
Sbjct: 122 CGPTLRLFEEVRELRLGL-DGFTLSGVITACG--DDVGLVRQLHCFVVVCGHDCYASVNN 178

Query: 199 ALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           A+   Y + G ++EAR++F +M +   RD VSW AMI    Q     E   LF E+++ G
Sbjct: 179 AVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRG 238

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-GNVENS 314
           ++ + FT A VL A         G+Q HG M + G+   S   S L+ +YSKC G++   
Sbjct: 239 LKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVEC 298

Query: 315 KKVFNGMPRPDLVSWTSLIAGYA-QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           +KVF  +  PDLV W ++I+G++    + +  L  F  + ++G +PD   FV V +AC++
Sbjct: 299 RKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSN 358

Query: 374 AGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
                 G Q  H++  K  + Y        +V + ++ G  H+A  V   MP + +    
Sbjct: 359 LSSPSLGKQ-VHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNTVSL 416

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTM 469
            S++ G   HG    + R  E + E  I P N  T++ +
Sbjct: 417 NSMIAGYAQHGVEVESLRLFELMLEKDIAP-NSITFIAV 454


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 251/468 (53%), Gaps = 35/468 (7%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           + +EA+   H++      P+   YS ++  C    AL+ GK++HS +  +G +  V + N
Sbjct: 297 KFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGN 356

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMY KC N+                              +E A   F  +   +  S
Sbjct: 357 SLVDMYMKCSNM------------------------------IEDAVRAFRGIASPNVIS 386

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WT++I+G+  +    E++ ++  MQ       N FTLS++L A   I+ L   +++HGYI
Sbjct: 387 WTSLIAGFSEHGLEEESIKVFGAMQGV-GVRPNSFTLSTILGACGTIKSLTQTRKLHGYI 445

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++   D+D VV +AL D Y   G +++A  +   M  RDV+++T++  R  Q G  E   
Sbjct: 446 IKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMAL 505

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            + + + K  +R + F+ A  L+A A     E GKQ+H Y  + G   +   ++ LV +Y
Sbjct: 506 NIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLY 565

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCG + ++ + F  +  PD VSW  LI G A NG    AL  FE +  +G +PD I  +
Sbjct: 566 GKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCL 625

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VL AC+H GLVD GL YF S++EKHG+    DHY C+VDLL R+GR  EA +VI  MP 
Sbjct: 626 LVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPF 685

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           KPD  ++ +LLG C++HGN+ L +  A    E++P +PA YV +AN+Y
Sbjct: 686 KPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLY 733



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 202/417 (48%), Gaps = 35/417 (8%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S+   ++ FC  +R++ +G  +HS +   GF+  +F+SN LL +Y KC  ++        
Sbjct: 17  SLLKDIVSFC-NSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVA-------- 67

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                                  +AR LFDEMP RD  SWT ++S Y +     EAL+L+
Sbjct: 68  -----------------------EARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELF 104

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M        N+FTLS+ L + SA++    G      + ++GFDS+ V+ SAL D Y K
Sbjct: 105 DSML-ISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSK 163

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG   EA ++F+ M + D+VSWT M+  + + G   +   L+  +I++G+ PN FTF  +
Sbjct: 164 CGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKL 223

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L A +       GK VH ++     +      +ALV MY KC ++E++ KV       D+
Sbjct: 224 L-AASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDV 282

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
             WT++I+G+ Q+    +A+  F  +  SG  P++  + G+L AC+    +D G Q  HS
Sbjct: 283 FLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQ-IHS 341

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                GL         +VD+  +     E      +    P+   W SL+ G   HG
Sbjct: 342 RVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHG 398



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 218/448 (48%), Gaps = 52/448 (11%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL++   +     +P+    S+ ++ C   R    G +  + +  SGF     + + L
Sbjct: 98  EEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSAL 157

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +D Y+KCG   +A  +F+ M   D+ S+  M+S F + GS  QA  L+            
Sbjct: 158 IDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLY------------ 205

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                             +RM+Q       N+FT   +L+A S+   L  GK +H ++M 
Sbjct: 206 ------------------HRMIQT--GVAPNEFTFVKLLAA-SSFLGLNYGKLVHAHLMM 244

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
              + + V+ +AL DMY KC SI +A ++    ++ DV  WTA+I  + Q  +  E    
Sbjct: 245 WRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITA 304

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F E+  SG+ PN FT++G+LNAC+   A +LGKQ+H  +   G +      ++LV MY K
Sbjct: 305 FHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMK 364

Query: 308 CGN-VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           C N +E++ + F G+  P+++SWTSLIAG++++G+ +++++ F  +   G +P+      
Sbjct: 365 CSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLST 424

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHG--LTYTADHYACI----VDLLARSGRFHEAEDVI 420
           +L AC         ++     ++ HG  +   AD+   +    VD  A  G   +A  V 
Sbjct: 425 ILGAC-------GTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVT 477

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           S M  + D   + SL       GN ++A
Sbjct: 478 SMMKHR-DVITYTSLATRINQTGNHEMA 504


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 254/449 (56%), Gaps = 32/449 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S    +++ C + + L +GK  H+ +   G K  +  SN L++MY+KC            
Sbjct: 65  SFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKC------------ 112

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                              GS++ AR +FDEMP R   SW  MI    +  +  EALDL 
Sbjct: 113 -------------------GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL 153

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             MQ  E +  ++FT+SSVL A +A   L   + +H + ++   D +  V +AL D+Y K
Sbjct: 154 LQMQR-EGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAK 212

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG + +A  +F+ M DR VV+W++M   Y Q    E+  ALF +  ++G++ + F  + V
Sbjct: 213 CGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSV 272

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           + ACA  AA   GKQ++  +++ G+    F AS+L+ MY+KCG +E S KVF  + + ++
Sbjct: 273 ICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNV 332

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V W ++I+G +++    + +  FE + + G  P+ + FV VL+AC H GLV KG +YF  
Sbjct: 333 VLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDL 392

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + ++H L     HY+C+VD L+R+G+  EA D+ISK+P      +W SLL  CR HGNL+
Sbjct: 393 MTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLE 452

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYAS 475
           LA+ AA+ LF+IEP N   Y+ ++N+YA+
Sbjct: 453 LAEVAAKKLFDIEPHNSGNYLLLSNMYAA 481


>gi|302761980|ref|XP_002964412.1| hypothetical protein SELMODRAFT_81698 [Selaginella moellendorffii]
 gi|300168141|gb|EFJ34745.1| hypothetical protein SELMODRAFT_81698 [Selaginella moellendorffii]
          Length = 504

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 265/488 (54%), Gaps = 46/488 (9%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGF----KPG-VFISNCLLDMYAKCGNISDAQ 81
           S  ++++  C   RAL EGK+VH  +         +P    + N ++ MY +CG    A 
Sbjct: 11  SACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLAL 70

Query: 82  TLFDEMQERDVCSYNTMISGFTKGG----------------------------------- 106
            +FD M++++V ++ ++IS FT  G                                   
Sbjct: 71  DVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFVHECIVEAGFGSHTVVGTAVLGMYSK 130

Query: 107 --SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
             SLE AR  F+ +   D  S+TAMI+ Y   N   EAL L+  M   E       TL+S
Sbjct: 131 CRSLELARAAFESIEAHDRISYTAMITAYSE-NSSSEALVLFHKMV-LEGVALCDITLAS 188

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
            L+A      LR GK IHG     G +SD VV +AL +MY KCG I +A+ +FD+M+ RD
Sbjct: 189 ALNACGDPAMLRHGKVIHGMAGEKGLESDMVVGTALVNMYSKCGEIEQAKVVFDRMIQRD 248

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           VV WTAMIG Y + G+    F LF ++ + S +RPN  T+  + NAC++ AA    + +H
Sbjct: 249 VVLWTAMIGGYAENGQPRLAFDLFRQMQQQSSVRPNRVTYLTLANACSEKAALPDARFLH 308

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
             ++    D      SA+V MY +CG+V ++++ F  +     V+W S+IA + QNG  D
Sbjct: 309 AKISSEKIDD-PVTVSAVVSMYGRCGSVGDARQAFKQLKHKCAVAWNSIIAVHTQNGDAD 367

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           ++LE    +L  G++PD + F+ VL+ C+HAGLV +G + F SI++ H L    +HY+C+
Sbjct: 368 ESLELLGRMLLDGSKPDRVTFISVLSMCSHAGLVKQGCEIFTSIRDDHRLEPAMEHYSCV 427

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
            D+L R+G   EAE+ + KM ++PD  +WA LLG C+++G+++ ++R A  + E++P N 
Sbjct: 428 TDMLGRAGWLEEAENFVKKMGLEPDDGIWACLLGACKMYGDVERSERIARKVLELQPHNS 487

Query: 464 ATYVTMAN 471
             Y+ + N
Sbjct: 488 EAYIVLCN 495



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 144/337 (42%), Gaps = 44/337 (13%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL + H++     ++     +S +  C     L  GK +H      G +  + +   L+
Sbjct: 166 EALVLFHKMVLEGVALCDITLASALNACGDPAMLRHGKVIHGMAGEKGLESDMVVGTALV 225

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           +MY+KCG I  A+ +FD M +RDV  +  MI G+ + G                      
Sbjct: 226 NMYSKCGEIEQAKVVFDRMIQRDVVLWTAMIGGYAENG---------------------- 263

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                    QP  A DL+R MQ   +   N+ T  ++ +A S    L   + +H  I   
Sbjct: 264 ---------QPRLAFDLFRQMQQQSSVRPNRVTYLTLANACSEKAALPDARFLHAKISSE 314

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
             D D V  SA+  MYG+CGS+ +ARQ F ++  +  V+W ++I  + Q G  +E   L 
Sbjct: 315 KID-DPVTVSAVVSMYGRCGSVGDARQAFKQLKHKCAVAWNSIIAVHTQNGDADESLELL 373

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD----PYSFAASALVHM 304
             ++  G +P+  TF  VL+ C+ HA   L KQ     T I  D    P     S +  M
Sbjct: 374 GRMLLDGSKPDRVTFISVLSMCS-HAG--LVKQGCEIFTSIRDDHRLEPAMEHYSCVTDM 430

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
             + G +E ++     M   PD   W  L+      G
Sbjct: 431 LGRAGWLEEAENFVKKMGLEPDDGIWACLLGACKMYG 467



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 92/206 (44%), Gaps = 14/206 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y +L   C +  AL + + +H+ + S      V +S  ++ MY +CG++ DA+  
Sbjct: 283 PNRVTYLTLANACSEKAALPDARFLHAKISSEKIDDPVTVS-AVVSMYGRCGSVGDARQA 341

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM------PQRDNF-SWTAMISGYVRY 136
           F +++ +   ++N++I+  T+ G  +++  L   M      P R  F S  +M S     
Sbjct: 342 FKQLKHKCAVAWNSIIAVHTQNGDADESLELLGRMLLDGSKPDRVTFISVLSMCSHAGLV 401

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
            Q  E     R     E ++ +   ++ +L     ++      E   ++ + G + D+ +
Sbjct: 402 KQGCEIFTSIRDDHRLEPAMEHYSCVTDMLGRAGWLE------EAENFVKKMGLEPDDGI 455

Query: 197 WSALSDMYGKCGSINEARQIFDKMVD 222
           W+ L       G +  + +I  K+++
Sbjct: 456 WACLLGACKMYGDVERSERIARKVLE 481


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 257/451 (56%), Gaps = 33/451 (7%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           +P +Y SLI  C + R+L++ + +H+HL  S F   VF+ N L+ +Y KCG ++D     
Sbjct: 63  TPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVAD----- 117

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                                     AR +FD MP RD  SWT++I+GY + + P EAL 
Sbjct: 118 --------------------------ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALG 151

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L   M        N FT +S+L A  A     +G++IH   ++  +  D  V SAL DMY
Sbjct: 152 LLPGMLRGRFK-PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMY 210

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            +CG ++ A  +FD++  ++ VSW A+I  + ++G  E    +F+E+ ++G     FT++
Sbjct: 211 ARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYS 270

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            V +A A   A E GK VH +M + G    +F  + ++ MY+K G++ +++KVF+ + + 
Sbjct: 271 SVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKK 330

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+V+W S++  +AQ G+  +A+ +FE + K G   + I F+ +LTAC+H GLV +G QYF
Sbjct: 331 DVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF 390

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             +KE + L    DHY  +VDLL R+G  ++A   I KMPMKP   +W +LLG CR+H N
Sbjct: 391 DMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKN 449

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             + + AA+ +FE++P++    V + NIYAS
Sbjct: 450 AKIGQFAADHVFELDPDDTGPPVLLYNIYAS 480



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 33/311 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++SL++    + +   G+++H+      +   V++ + LLDMYA+CG +  A  +
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+++ ++  S+N +I+GF + G  E    +F EM QR+ F  T                
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM-QRNGFEAT---------------- 265

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                           FT SSV SA++ I  L  GK +H +++++G      V + + DM
Sbjct: 266 ---------------HFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDM 310

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K GS+ +AR++FD++  +DVV+W +M+  + Q G   E    F E+ K G+  N  TF
Sbjct: 311 YAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITF 370

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
             +L AC+     + GKQ    M     +P       +V +  + G + ++      MP 
Sbjct: 371 LSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPM 430

Query: 323 RPDLVSWTSLI 333
           +P    W +L+
Sbjct: 431 KPTAAVWGALL 441


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 257/451 (56%), Gaps = 33/451 (7%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           +P +Y SLI  C + R+L++ + +H+HL  S F   VF+ N L+ +Y KCG ++D     
Sbjct: 63  TPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVAD----- 117

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                                     AR +FD MP RD  SWT++I+GY + + P EAL 
Sbjct: 118 --------------------------ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALG 151

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L   M        N FT +S+L A  A     +G++IH   ++  +  D  V SAL DMY
Sbjct: 152 LLPGMLRGRFK-PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMY 210

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            +CG ++ A  +FD++  ++ VSW A+I  + ++G  E    +F+E+ ++G     FT++
Sbjct: 211 ARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYS 270

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            V +A A   A E GK VH +M + G    +F  + ++ MY+K G++ +++KVF+ + + 
Sbjct: 271 SVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKK 330

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+V+W S++  +AQ G+  +A+ +FE + K G   + I F+ +LTAC+H GLV +G QYF
Sbjct: 331 DVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF 390

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             +KE + L    DHY  +VDLL R+G  ++A   I KMPMKP   +W +LLG CR+H N
Sbjct: 391 DMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKN 449

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             + + AA+ +FE++P++    V + NIYAS
Sbjct: 450 AKIGQFAADHVFELDPDDTGPPVLLYNIYAS 480



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 33/311 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++SL++    + +   G+++H+      +   V++ + LLDMYA+CG +  A  +
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+++ ++  S+N +I+GF + G  E    +F EM QR+ F  T                
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM-QRNGFEAT---------------- 265

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                           FT SSV SA++ I  L  GK +H +++++G      V + + DM
Sbjct: 266 ---------------HFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDM 310

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K GS+ +AR++FD++  +DVV+W +M+  + Q G   E    F E+ K G+  N  TF
Sbjct: 311 YAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITF 370

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
             +L AC+     + GKQ    M     +P       +V +  + G + ++      MP 
Sbjct: 371 LSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPM 430

Query: 323 RPDLVSWTSLI 333
           +P    W +L+
Sbjct: 431 KPTAAVWGALL 441


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 272/493 (55%), Gaps = 41/493 (8%)

Query: 24  PSPSIYSSLIQFCRQ--NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC---GNIS 78
           P    ++SL+    Q  + A+    ++H  +   G    + +SN L+ +Y KC   G   
Sbjct: 157 PDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTR 216

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           DA+ + DEM E+D  ++ T++ G  + G +  AR+ F+E+    +  W AMISGYV+   
Sbjct: 217 DARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGM 276

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD----SDE 194
             EA +L+R M + +    ++FT +S+LSA +       GK +HG  +R   D    +  
Sbjct: 277 CAEAFELFRRMVS-KRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAAL 335

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT------------------------- 229
            V +AL  +Y K G I  A +IFD M  +DVVSW                          
Sbjct: 336 PVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYK 395

Query: 230 ------AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
                  M+  Y   G  E+   LF+++    ++P  +T+AG + AC +  A + GKQ+H
Sbjct: 396 SELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLH 455

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            ++ + G++  + A +AL+ MY++CG V++++ VF  MP  D VSW ++I+   Q+G   
Sbjct: 456 AHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGR 515

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +ALE F+ ++  G  PD I F+ +LTAC HAGLVD G QYF S++   G++   DHYA +
Sbjct: 516 EALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARL 575

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +DLL R+GR  EA D+I  MP +P   +W ++L GCRI+G+++L   AA+ LF++ PE+ 
Sbjct: 576 IDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHD 635

Query: 464 ATYVTMANIYASA 476
            TY+ ++N Y++A
Sbjct: 636 GTYILLSNTYSAA 648



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 193/448 (43%), Gaps = 61/448 (13%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEM--QERDVCSYNTMISGFTKGGSLEQARNLF- 115
           PG   +  L+  YA  G + D+   FD +    RD   +N MIS F +      A ++F 
Sbjct: 87  PGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFR 146

Query: 116 -----DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
                D+  + D++S+T+++S   + +      DL        +   +K    +VLS  +
Sbjct: 147 SLLASDDSLRPDDYSFTSLLSAVGQMH------DLAVSHCTQLHCAVHKLGAGAVLSVSN 200

Query: 171 AIQCLRLGKEIHGY------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           A+  L +  +  G       ++    + DE+ W+ +   + + G ++ AR  F+++    
Sbjct: 201 ALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEF 260

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
            V W AMI  Y Q G   E F LF  ++   I P+ FTF  +L+ACA+      GK VHG
Sbjct: 261 DVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHG 320

Query: 285 YMTRIGYDPYSFAA----SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
              R+  D    AA    +ALV +YSK G +  + K+F+ M   D+VSW ++++GY ++G
Sbjct: 321 QFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESG 380

Query: 341 -----------MPDK--------------------ALEYFELLLKSGTQPDHIVFVGVLT 369
                      MP K                    AL+ F  +     +P    + G + 
Sbjct: 381 CLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVA 440

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC   G +  G Q  H+   + G   +      ++ + AR G   +A  V   MP   D 
Sbjct: 441 ACGELGALKHGKQ-LHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMP-NVDS 498

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFE 457
             W +++     HG+     R A  LF+
Sbjct: 499 VSWNAMISALGQHGH----GREALELFD 522


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 248/452 (54%), Gaps = 44/452 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN--ISDAQTLFDE 86
           Y  L++ C     L   K +H+H++  G    +++ N L+D Y++CG   + DA  LF++
Sbjct: 120 YPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEK 179

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M ERD  S+N+M+ G  K G L  AR LFDEMPQRD  SW  M+ GY R  +   A +L+
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELF 239

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M    N+VS                                       WS +   Y K
Sbjct: 240 EKMPE-RNTVS---------------------------------------WSTMVMGYSK 259

Query: 207 CGSINEARQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            G +  AR +FDKM    ++VV+WT +I  Y ++G  +E   L  +++ SG+R +A    
Sbjct: 260 AGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAI 319

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            +L ACA+     LG + H  + +   +  +   +AL+ MY+KCG+++ +  VFN MP+ 
Sbjct: 320 SILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKK 379

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           DLVSW +++ G   +G   +A+E F  + K G  PD + F+ VL +C HAGL+D+G+ YF
Sbjct: 380 DLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYF 439

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           +S+++ + L    +HY C+VDLL R GR  EA  V+  MPM+P+  +W +LLG CR+H  
Sbjct: 440 YSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNE 499

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +D+AK   + L +++P +P  Y  ++NIYA+A
Sbjct: 500 VDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAA 531



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 204/424 (48%), Gaps = 46/424 (10%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S  I+   +Q   +   L + K++H+ +        + I+  L+   + C   + A  +F
Sbjct: 15  SRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVF 74

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           +++QE +V   N+                               +I  +   +QP +A  
Sbjct: 75  NQVQEPNVHLCNS-------------------------------LIRAHALNSQPYQAFF 103

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           ++  MQ F    ++ FT   +L A S +  L + K +H +I + G  SD  V +AL D Y
Sbjct: 104 VFSEMQRF-GLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCY 162

Query: 205 GKCG--SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            +CG   + +A ++F+KM +RD VSW +M+G   + G   +   LF E+ +  +     +
Sbjct: 163 SRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDL----IS 218

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           +  +L+  A     E+ +    +      +  S+  S +V  YSK G++E ++ +F+ MP
Sbjct: 219 WNTMLDGYA--RCREMSRAFELFEKMPERNTVSW--STMVMGYSKAGDMEMARVMFDKMP 274

Query: 323 RP--DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
            P  ++V+WT +IAGYA+ G+  +A +  + ++ SG + D    + +L AC  +GL+  G
Sbjct: 275 FPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLG 334

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           ++  HSI +K  L   A     ++D+ A+ G   +A DV + MP K D   W ++L G  
Sbjct: 335 MRA-HSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMP-KKDLVSWNTMLHGLG 392

Query: 441 IHGN 444
           +HG+
Sbjct: 393 VHGH 396



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 135/303 (44%), Gaps = 12/303 (3%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           VS++      L  +     L   K++H  I+R     D  +   L      C   N A +
Sbjct: 13  VSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALR 72

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+++ + +V    ++I  +    +  + F +FSE+ + G+  + FT+  +L AC+  + 
Sbjct: 73  VFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSW 132

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG--NVENSKKVFNGMPRPDLVSWTSLI 333
             + K +H ++ ++G     +  +AL+  YS+CG   V ++ K+F  M   D VSW S++
Sbjct: 133 LPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSML 192

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            G  + G    A + F+ +     Q D I +  +L        + +  + F  + E++ +
Sbjct: 193 GGLVKAGELRDARKLFDEM----PQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTV 248

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLGGCRIHGNLDLAKRAA 452
           +++      +V   +++G    A  +  KMP      + W  ++ G    G L  A +  
Sbjct: 249 SWST-----MVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLV 303

Query: 453 EAL 455
           + +
Sbjct: 304 DQM 306


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 272/493 (55%), Gaps = 41/493 (8%)

Query: 24  PSPSIYSSLIQFCRQ--NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS--- 78
           P    +++LI    Q  N A     ++H  +  SG    + +SN L+ +Y KC       
Sbjct: 159 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 218

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           DA+ + DEM ++D  ++ TM+ G+ + G +  AR++F+E+  + +  W AMISGYV+   
Sbjct: 219 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 278

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR--TGFDSDEV- 195
             +A +L+R M + E    ++FT +SVLSA +       GK +HG I+R    F  +   
Sbjct: 279 CADAFELFRRMVS-EKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAAL 337

Query: 196 -VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA------------------------ 230
            V +AL  +Y K G I  A++IFD M  +DVVSW                          
Sbjct: 338 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK 397

Query: 231 -------MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
                  M+  Y   G  E+   LF+++    ++P  +T+AG + AC +  A + G+Q+H
Sbjct: 398 NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 457

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            ++ + G++  + A +AL+ MY+KCG V +++ VF  MP  D VSW ++I+   Q+G   
Sbjct: 458 AHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGR 517

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +ALE F+ ++  G  PD I F+ +LTAC HAGLVD+G  YF S+K   G++   DHYA +
Sbjct: 518 EALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL 577

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +DLL RSGR  EA D+I  MP +P   +W ++L GCR +G+++    AA+ LF + P++ 
Sbjct: 578 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 637

Query: 464 ATYVTMANIYASA 476
            TY+ ++N Y++A
Sbjct: 638 GTYILLSNTYSAA 650



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 38/239 (15%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL++ +Q+      P    Y+  I  C +  AL+ G+++H+HL   GF+      N L
Sbjct: 416 EDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNAL 475

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L MYAKCG ++DA+ +F  M   D  S+N MIS   + G   +A  LFD+M         
Sbjct: 476 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVA------- 528

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                        E +D             ++ +  ++L+A +    +  G      + R
Sbjct: 529 -------------EGID------------PDRISFLTILTACNHAGLVDEGFHYFESMKR 563

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEG 244
             G    E  ++ L D+ G+ G I EAR +   M      S W A++      G  E G
Sbjct: 564 DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFG 622


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 257/469 (54%), Gaps = 38/469 (8%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT- 103
           GK++HS     GF   + ++N LL++YAK  +++ A+ +F EM E +V S+N MI+GF  
Sbjct: 254 GKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQ 313

Query: 104 ----------------------------------KGGSLEQARNLFDEMPQRDNFSWTAM 129
                                             + G +E  R +F+ +PQ    +W AM
Sbjct: 314 EYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAM 373

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           +SGY  Y    EA++ +R MQ F+N   ++ TLS +LS+ + ++ L  GK+IHG  +RT 
Sbjct: 374 LSGYSNYEHYEEAINNFRQMQ-FQNLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTE 432

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALF 248
              D  + S L  +Y +C  +     IFD  ++  D+  W +MI    +     +   LF
Sbjct: 433 TSEDSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLF 492

Query: 249 SELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
             + ++ +  PN  T+A VL +C+   +   G+Q HG + + GY   SF  +A+  MY K
Sbjct: 493 RRMHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCK 552

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG +E++++ F+ + R + V W  +I GYA NG  D+A++ +  ++ +G +PD I FV V
Sbjct: 553 CGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSV 612

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTAC+H+GLVD GL+   S++  HG+    DHY CIVD L R+GR  +AE +    P K 
Sbjct: 613 LTACSHSGLVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKS 672

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              LW  LL  CR++G++ LA+R AE L  ++P+N A YV ++N Y+S 
Sbjct: 673 SSVLWEILLSSCRVYGDVSLARRVAEKLMHLDPQNSAAYVLLSNTYSSV 721



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 211/403 (52%), Gaps = 25/403 (6%)

Query: 53  KSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112
           + +G     ++ N LLD+Y + G+   A+ LFDEM  RDV S+N  ++   K G LE+A 
Sbjct: 19  ERTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEAC 78

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172
            +FD MP+RD  SW  MIS  VR     +ALD+Y  M   +  + ++FTL+SVLSA S +
Sbjct: 79  EVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVG-DGFLPSRFTLASVLSACSKV 137

Query: 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG-SINEARQIFDKMVDRDVVSWTAM 231
           Q   +G   HG  ++TG D +  V +AL  MY KCG  ++   ++F+ + + + VS+T +
Sbjct: 138 QDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTV 197

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL---------NACADHAAEELGKQV 282
           I    +E +  E   +F  + + G++ +    + +L         ++ ++     LGKQ+
Sbjct: 198 ISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQI 257

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H    R G+       ++L+ +Y+K  ++  ++ +F  MP  ++VSW  +IAG+ Q    
Sbjct: 258 HSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRS 317

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           DK++EY + +  SG +P+ +  + +L AC  +G V+ G + F++I +     + A     
Sbjct: 318 DKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNA----- 372

Query: 403 IVDLLARSGRFHEAEDVISKM------PMKPDKFLWASLLGGC 439
              +L+    +   E+ I+         +KPD+   + +L  C
Sbjct: 373 ---MLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSC 412



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 151/322 (46%), Gaps = 34/322 (10%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+  Q   P  +  S ++  C + R LE GK++H     +       I + L+ +Y++C 
Sbjct: 392 QMQFQNLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVSGLIAVYSECE 451

Query: 76  NISDAQTLFDE-MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
            +   + +FD+ + E D+  +N+MISG          RN  D                  
Sbjct: 452 KMEICECIFDDCINELDIACWNSMISGLR--------RNTLD------------------ 485

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                 +AL L+R M      + N+ T + VL + S +  L  G++ HG ++++G+ SD 
Sbjct: 486 -----TKALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDS 540

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +A++DMY KCG I  ARQ FD +  ++ V W  MI  Y   GR +E   L+ E+I +
Sbjct: 541 FVETAVTDMYCKCGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISA 600

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVEN 313
           G +P+  TF  VL AC+     + G ++   M R  G +P       +V    + G +E+
Sbjct: 601 GEKPDGITFVSVLTACSHSGLVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLED 660

Query: 314 SKKVFNGMP-RPDLVSWTSLIA 334
           ++ +    P +   V W  L++
Sbjct: 661 AETLAEATPYKSSSVLWEILLS 682



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 176/418 (42%), Gaps = 60/418 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD-AQT 82
           PS    +S++  C + +    G + H     +G    +F+ N LL MYAKCG + D    
Sbjct: 122 PSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVR 181

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+ + E +  S+ T+ISG  +   + +A ++F  M ++        +S  +  + P E 
Sbjct: 182 VFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREG 241

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            D                +LS +   V       LGK+IH   +R GF  +  + ++L +
Sbjct: 242 CD----------------SLSEIYGNV-------LGKQIHSLALRRGFVGELHLNNSLLE 278

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y K   +N A  IF +M + +VVSW  MI  + QE R ++       +  SG  PN  T
Sbjct: 279 IYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVT 338

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L AC                                    + G+VE  +++FN +P
Sbjct: 339 CISILGACF-----------------------------------RSGDVETGRRIFNTIP 363

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           +P + +W ++++GY+     ++A+  F  +     +PD      +L++C     ++ G Q
Sbjct: 364 QPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGKQ 423

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
             H +  +   +  +   + ++ + +   +    E +      + D   W S++ G R
Sbjct: 424 -IHGVAIRTETSEDSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLR 480



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 134/274 (48%), Gaps = 14/274 (5%)

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
           W+A      K G + EA ++FD M +RDVVSW  MI    ++G  E+   ++  ++  G 
Sbjct: 61  WNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGF 120

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG-NVENSK 315
            P+ FT A VL+AC+      +G + HG   + G D   F  +AL+ MY+KCG  V+   
Sbjct: 121 LPSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGV 180

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           +VF  +  P+ VS+T++I+G A+     +A+  F L+ + G Q D +    +L+      
Sbjct: 181 RVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPRE 240

Query: 376 LVDKGLQYF--------HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
             D   + +        HS+  + G          ++++ A++   + AE + ++MP + 
Sbjct: 241 GCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMP-EV 299

Query: 428 DKFLWASLLGGC----RIHGNLDLAKRAAEALFE 457
           +   W  ++ G     R   +++  KR  ++ FE
Sbjct: 300 NVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFE 333



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 15/216 (6%)

Query: 18  LHQIS--HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +HQ S   P+ + Y+ ++  C +  +L  G++ H  +  SG+    F+   + DMY KCG
Sbjct: 495 MHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCG 554

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMIS 131
            I  A+  FD +  ++   +N MI G+   G  ++A +L+ EM     + D  ++ ++++
Sbjct: 555 EIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLT 614

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-RLGK--EIHGYIMRT 188
                      L++   MQ  ++ +  +         +  + CL R G+  +       T
Sbjct: 615 ACSHSGLVDTGLEILSSMQR-DHGIEPELD-----HYICIVDCLGRAGRLEDAETLAEAT 668

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
            + S  V+W  L       G ++ AR++ +K++  D
Sbjct: 669 PYKSSSVLWEILLSSCRVYGDVSLARRVAEKLMHLD 704


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 266/491 (54%), Gaps = 43/491 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   ++  + + C Q   LE G +VH  +   G +  + + N L+DMY+K G++   + +
Sbjct: 122 PDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRV 181

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLE---------------------------------- 109
           FDEM ERDV S+N+MISG+   G LE                                  
Sbjct: 182 FDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLC 241

Query: 110 -QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
            +A  +F+++ + +  S T ++SGY R     ++L ++R M +   +  +  +LSSVL +
Sbjct: 242 DEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVS 301

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWS---ALSDMYGKCGSINEARQIFDKMVDRDV 225
              +  L  G+EIHGY +R+  DS     S   AL  MY KC  I +A  +F+ M   DV
Sbjct: 302 CRHLGALVCGQEIHGYGIRS-VDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDV 360

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V+W AMI  +            FS++ +SGI  N  T + VL AC   +    GKQVH Y
Sbjct: 361 VTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPACDLKS----GKQVHAY 416

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           +T+  +       +AL+HMYSKCG +  +  +F+ M   DLVSW ++I G+  +G+   A
Sbjct: 417 ITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFA 476

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L+    +  S   P+ + F   L+AC+H+GLVD+G++ FH++    G T   +H++C+VD
Sbjct: 477 LQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVD 536

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
           LLAR+ R  +A   I KMP+KP K +W++LL  CR   N+ +AK AAE LF++EPE+   
Sbjct: 537 LLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGN 596

Query: 466 YVTMANIYASA 476
           YVT++NIYA A
Sbjct: 597 YVTLSNIYARA 607



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 148/290 (51%), Gaps = 5/290 (1%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + F L+ +L   S  + L  GK++H +I+  G D    + + L  MY  CG +  A+ +F
Sbjct: 22  SSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALF 81

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           DK+   +V +WTA++G Y + G  +E    +SE+   G+ P+ + F  V  AC      E
Sbjct: 82  DKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLE 141

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           +G QVH  +   G +      ++L+ MYSK G+V + ++VF+ M   D++SW S+I+GY 
Sbjct: 142 VGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYV 201

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH--GLTY 395
            NG  + ++E    +   G +PD + +  V+ A    GL D+  + F  IKE +   LT 
Sbjct: 202 CNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLTT 261

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
               Y+ I +     G F E   ++S+    PD    +S+L  CR  G L
Sbjct: 262 LVSGYSRIGNHEKSLGIFRE---MMSRRVAFPDLDSLSSVLVSCRHLGAL 308



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 187/421 (44%), Gaps = 75/421 (17%)

Query: 25  SPSIYSS-----LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           +P++ SS     L+Q C  ++AL +GK++H H+   G     F+   L+ MYA CG++  
Sbjct: 17  NPNLLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGS 76

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           AQ L                               FD++ Q + F+WTA++  Y R    
Sbjct: 77  AQAL-------------------------------FDKLSQPNVFAWTAILGFYSRNGLS 105

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            E +  Y  M+  +  + +K+    V  A   +  L +G ++H  ++  G + D  V ++
Sbjct: 106 DECVRTYSEMK-LKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNS 164

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY K G +   R++FD+MV+RDV+SW +MI  Y   G  E    L + +   G  P+
Sbjct: 165 LIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPD 224

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T+  V++A                                   Y + G  + + ++F 
Sbjct: 225 MVTWNTVMDA-----------------------------------YCRMGLCDEAWEIFE 249

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
            +  P+++S T+L++GY++ G  +K+L  F E++ +    PD      VL +C H G + 
Sbjct: 250 QIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALV 309

Query: 379 KGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            G + + + I+     ++     A ++ +  +  R  +A +V   M  + D   W +++ 
Sbjct: 310 CGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMD-RFDVVTWNAMIL 368

Query: 438 G 438
           G
Sbjct: 369 G 369



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 151/322 (46%), Gaps = 44/322 (13%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSH----LKSSGFKPGVFISNCLLDMYAKCG 75
           +++ P     SS++  CR   AL  G+++H +    + SS F         LL MY KC 
Sbjct: 286 RVAFPDLDSLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSA--GAALLTMYVKCK 343

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            I DA  +F+ M   DV ++N MI GF     LE                      G++ 
Sbjct: 344 RIQDALNVFELMDRFDVVTWNAMILGFV---DLEM---------------------GHL- 378

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                 AL+ +  MQ     ++N+ T+S+VL A      L+ GK++H YI +  F S   
Sbjct: 379 ------ALECFSKMQR-SGIMNNQITISTVLPACD----LKSGKQVHAYITKNSFSSVIP 427

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           VW+AL  MY KCG I  A  IF  M+ RD+VSW  MIG +   G  +    L  ++  S 
Sbjct: 428 VWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSD 487

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENS 314
           + PN+ TF   L+AC+     + G ++   MTR  G+ P     S +V + ++   +E++
Sbjct: 488 VCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDA 547

Query: 315 KKVFNGMP-RPDLVSWTSLIAG 335
                 MP +P    W++L+A 
Sbjct: 548 VGFIEKMPLKPSKHIWSALLAA 569


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 268/481 (55%), Gaps = 39/481 (8%)

Query: 1   AIDILCNQRRLKEALQILHQISH---PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
            ++I  +  RL+EAL  LH        +   Y++++  C + RA+ EG++VH+H+  + +
Sbjct: 32  VLNIHIHDTRLREAL--LHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHY 89

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
            P V++   L+  Y KC ++ DA                               R++FD 
Sbjct: 90  LPCVYLRTRLIVFYVKCDSLRDA-------------------------------RHVFDV 118

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+R+  SWTAMIS Y +     +AL L+  M     +  N+FT ++VL++        L
Sbjct: 119 MPERNVVSWTAMISAYSQRGYASQALSLFVQMLR-SGTEPNEFTFATVLTSCIGSSGFVL 177

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++IH +I++  +++   V S+L DMY K G I+EAR IF  + +RDVVS TA+I  Y Q
Sbjct: 178 GRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQ 237

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  EE   LF  L + G++ N  T+  VL A +  AA + GKQVH ++ R     Y   
Sbjct: 238 LGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVL 297

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSG 356
            ++L+ MYSKCGN+  ++++F+ +    ++SW +++ GY+++G   + LE F L++ ++ 
Sbjct: 298 QNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENK 357

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE-KHGLTYTADHYACIVDLLARSGRFHE 415
            +PD +  + VL+ C+H GL DKG+  F+ +   K  +   + HY C+VD+L R+GR   
Sbjct: 358 VKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEA 417

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A + + KMP +P   +W  LLG C +H NLD+ +     L +IEPEN   YV ++N+YAS
Sbjct: 418 AFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYAS 477

Query: 476 A 476
           A
Sbjct: 478 A 478


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/532 (31%), Positives = 284/532 (53%), Gaps = 68/532 (12%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLD 69
           L++++ +L   S  +   Y+ L+  C +   + + K++ SH++   F+P   F+ N LL 
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           +YAK G + DAQ LFD+M +RD  S+N ++S + K GS++  +  FD MP RD+ S+   
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTT 126

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+G+   + P E+L+L++ MQ  E     ++T+ S+L+A + +  LR GK+IHG I+   
Sbjct: 127 IAGFSGNSCPQESLELFKRMQR-EGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRN 185

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F  +  +W+AL+DMY KCG I +AR +FD +  +++VSW  MI  Y + G+ E+   L  
Sbjct: 186 FLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLH 245

Query: 250 ELIKSGIRPNAFTFAGVLNA-CADHAAEELGKQVHGYMTR---------IGY-------- 291
           ++  SG  P+  T + ++ A C     +E  +    +  +         +GY        
Sbjct: 246 QMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREED 305

Query: 292 -------------DPYSFAASALVHMYSKCGNVENSKKV--------------------- 317
                        +P S+  S++V   +K  ++ + + V                     
Sbjct: 306 ALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALID 365

Query: 318 --------------FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
                         FN MP  ++VSW ++I G AQNG    ALE FE +L+   +PD++ 
Sbjct: 366 MYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVT 425

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+G+L+AC H   +++G +YF SI  +HG+T T DHYAC+V+LL R+GR  +A  +I  M
Sbjct: 426 FIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
              PD  +W++LL  C   G++  A+ AA  LFE++P     Y+ ++N+YAS
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYAS 537



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 186/372 (50%), Gaps = 38/372 (10%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C Q  L+   ++  +   P+     S++    Q   L  GK++H  +    F   VFI N
Sbjct: 135 CPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWN 194

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS------------------ 107
            L DMYAKCG I  A+ LFD + ++++ S+N MISG+ K G                   
Sbjct: 195 ALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP 254

Query: 108 -----------------LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                            +++AR +F E  ++D   WTAM+ GY +  +  +AL L+  M 
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEML 314

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E+   + +TLSSV+S+ + +  L  G+ +HG  +  G +++ +V SAL DMY KCG I
Sbjct: 315 -LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFI 373

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++AR +F+ M  R+VVSW AMI    Q G  ++   LF  +++   +P+  TF G+L+AC
Sbjct: 374 DDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSAC 433

Query: 271 ADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVS 328
                 E G++    ++ + G  P     + +V++  + G +E +  +   M   PD + 
Sbjct: 434 LHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLI 493

Query: 329 WTSLIAGYAQNG 340
           W++L++  +  G
Sbjct: 494 WSTLLSICSTKG 505


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 167/480 (34%), Positives = 271/480 (56%), Gaps = 6/480 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D  C    L  A Q+  ++       ++ +I    +    EE  K+   +++  F+P  
Sbjct: 185 VDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSG 244

Query: 62  FISNCLLDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F    +L M     ++   Q +           D+   N ++  ++K   ++ A+NLFDE
Sbjct: 245 FTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDE 304

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+ D  S+  +I+GY    Q  ++ DL++ +Q       N F  +++LS  +    L +
Sbjct: 305 MPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKN-FPFATMLSVAAIELNLSM 363

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++ H   + T   S+  V +AL DMY KC    +A +IF  +  R+ V WTA+I  Y Q
Sbjct: 364 GRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQ 423

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G  EE   +F E+ +  +  +  TFA  L A A+ A+  LGKQ+H  + R+G     F+
Sbjct: 424 KGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFS 483

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            S LV MY+ CG+++++ +VF  MP  ++V W +LI+ Y+QNG  +     F  +++SG 
Sbjct: 484 GSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGL 543

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD + F+ VLTAC+H GLV+K L YF+S+ + + L     HYA ++D+L RSGRF+EAE
Sbjct: 544 YPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAE 603

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
           ++IS+MP +PD+ +W+S+L  CRIH N DLAK+AA+ LF+++   + A YV M+NIYA A
Sbjct: 604 NLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEA 663



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 194/390 (49%), Gaps = 3/390 (0%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           V + +  +GF P +   N  L    +   I+ A+ LFDEM  R+  S N M+SG+ K  +
Sbjct: 33  VDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRN 92

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L +AR LF+ M  R+  SWT MI GY + NQP EA +LY  M        +  T +++LS
Sbjct: 93  LFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCR-SGVKPDHITFATLLS 151

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
                  L+   +IH +I+R GF +  +V+++L D Y K   ++ A Q+F +M  +D VS
Sbjct: 152 GFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVS 211

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           +  MI  Y + G REE   LF ++     +P+ FTFA +L           G+Q+HG   
Sbjct: 212 FNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAI 271

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           +  Y    F A+AL+  YSK   ++ +K +F+ MP  D VS+  +I GYA NG  +K+ +
Sbjct: 272 KTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFD 331

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            F+ L  +     +  F  +L+       +  G Q  H+                +VD+ 
Sbjct: 332 LFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQT-HAQAVVTTAVSEVQVGNALVDMY 390

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           A+  +F +A  + + +  + +   W +++ 
Sbjct: 391 AKCEKFEDANRIFANLAYR-NSVPWTAIIS 419



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 202/449 (44%), Gaps = 45/449 (10%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA  +  ++      P    +++L+        L+E  ++HSH+   GF   + + N L
Sbjct: 125 KEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSL 184

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +D Y K   +  A  LF EM  +D  S+N MI+G+TK G  E+A  LF +M   D     
Sbjct: 185 VDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMD----- 239

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                     QP                  + FT +++L      + +  G++IHG  ++
Sbjct: 240 ---------FQP------------------SGFTFAAMLGMSVGSEDVIFGQQIHGLAIK 272

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           T +  D  V +AL D Y K   I+ A+ +FD+M + D VS+  +I  Y   G+ E+ F L
Sbjct: 273 TSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDL 332

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  L  +      F FA +L+  A      +G+Q H               +ALV MY+K
Sbjct: 333 FKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAK 392

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           C   E++ ++F  +   + V WT++I+ Y Q G  ++AL+ F+ + +     D   F   
Sbjct: 393 CEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFAST 452

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L A  +   V  G Q  HS   + GL  +    + +VD+ A  G   +A +V  +MP + 
Sbjct: 453 LKASANLASVSLGKQ-LHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDR- 510

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           +   W +L+     +G+       AEA F
Sbjct: 511 NIVCWNALISAYSQNGD-------AEATF 532



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 175/386 (45%), Gaps = 37/386 (9%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  G++ H+    +     V + N L+DMYAKC    DA                     
Sbjct: 361 LSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDAN-------------------- 400

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
                       +F  +  R++  WTA+IS YV+     EAL +++ M N EN   ++ T
Sbjct: 401 -----------RIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEM-NRENVHGDQAT 448

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
            +S L A + +  + LGK++H  ++R G  S     S L DMY  CGS+ +A ++F +M 
Sbjct: 449 FASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP 508

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
           DR++V W A+I  Y Q G  E  F+ F+++I+SG+ P++ +F  VL AC+     E    
Sbjct: 509 DRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALW 568

Query: 282 VHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQN 339
               MT++   DP     + ++ +  + G    ++ + + MP  PD V W+S++     +
Sbjct: 569 YFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIH 628

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
              D A +  + L K     D   +V +      AG  +   +   +++E+     TA  
Sbjct: 629 KNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYS 688

Query: 400 YACI---VDLLARSGRFHEAEDVISK 422
           +  I   V +   + R H   + I +
Sbjct: 689 WVEIDHRVHVFTANDRTHPQTEQIRR 714


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 267/486 (54%), Gaps = 29/486 (5%)

Query: 2   IDILCNQRRLKEALQI---LHQISHPSPSIYSSLIQFCRQNRAL---EEGKKVHSHLKSS 55
           I +   Q   ++A+ +   +   + P  S+ +SL    +   AL     G  +H+    S
Sbjct: 21  IRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRS 80

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY-----NTMISGFTKGGSLEQ 110
           G     F +N LL++Y K                   CSY      T + G     +LE 
Sbjct: 81  GAFADRFTANALLNLYCKLP-----------------CSYLHSTGVTSVGGTGSSTALES 123

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
            R +FDEM +RD  SW  ++ G     +  EAL L R M   E    + FTLSSVL   +
Sbjct: 124 VRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWR-EGFRPDSFTLSSVLPIFA 182

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
               ++ G E+HG+ +R GFD+D  V S+L DMY  C   + + ++FD +  RD + W +
Sbjct: 183 ECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNS 242

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           ++    Q G  EE   +F  ++++G+RP   TF+ ++  C + A+   GKQ+H Y+ R G
Sbjct: 243 VLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGG 302

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           ++   F +S+L+ MY KCG +  +  +F+ M  PD+VSWT++I GYA +G   +AL  FE
Sbjct: 303 FEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFE 362

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +     +P+HI F+ VLTAC+HAGLVDKG +YF S+ + +G+  T +H A + D+L R+
Sbjct: 363 RMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRA 422

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   EA + ISKM +KP   +W++LL  CR+H N  LA+  A+ + E+EP +  ++V ++
Sbjct: 423 GELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLS 482

Query: 471 NIYASA 476
           N+Y+++
Sbjct: 483 NMYSAS 488



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 136/333 (40%), Gaps = 85/333 (25%)

Query: 11  LKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           ++EAL I  ++      P P  +SSLI  C    +L  GK++H+++   GF+  VFIS+ 
Sbjct: 253 VEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSS 312

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMY KCG IS A  +FD M   DV S+  MI G+   G   +A  LF+ M        
Sbjct: 313 LIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERM-------- 364

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                      N+  N  T  +VL+A S           H  ++
Sbjct: 365 ------------------------ELGNAKPNHITFLAVLTACS-----------HAGLV 389

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G+      + ++SD YG   ++     + D            ++GR    G  +E + 
Sbjct: 390 DKGWK----YFKSMSDHYGIVPTLEHCAALAD------------ILGR---AGELDEAYN 430

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHA----AEELGKQVHGYMTRIGYDPYSFAAS-AL 301
             S   K  I+P A  ++ +L AC  H     AEE+ K++      +  +P S  +   L
Sbjct: 431 FIS---KMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKI------MELEPRSIGSHVVL 481

Query: 302 VHMYSKCGNVENSKKVF-----NGMPRPDLVSW 329
            +MYS  G    +  +       GM +    SW
Sbjct: 482 SNMYSASGRWNEAAHLRKSMRKKGMKKDPACSW 514



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 25/245 (10%)

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA---FTFAGVLNACADHAAEELGKQV 282
           +SW   I     +G   +  +LF  + ++   P +    +    L +CA      LG  +
Sbjct: 15  LSWAHQIRMAAAQGHFRDAISLFLRM-RACAAPRSSVPASLPAALKSCAALGLSALGASL 73

Query: 283 HGYMTRIGYDPYSFAASALVHMYSK--CG-----------------NVENSKKVFNGMPR 323
           H    R G     F A+AL+++Y K  C                   +E+ +KVF+ M  
Sbjct: 74  HALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIE 133

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSW +L+ G A+ G   +AL     + + G +PD      VL        V +G + 
Sbjct: 134 RDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSE- 192

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    ++G        + ++D+ A   R   +  V   +P++ D  LW S+L GC  +G
Sbjct: 193 VHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DPILWNSVLAGCAQNG 251

Query: 444 NLDLA 448
           +++ A
Sbjct: 252 SVEEA 256


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 244/454 (53%), Gaps = 34/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y  L   C    A+E G+  H  +   G      +S+ L+ MYA+CG + DA   
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDA--- 181

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                       R +FDE+ Q+D  SW +MISGY +     EA+
Sbjct: 182 ----------------------------RKVFDEISQKDLVSWNSMISGYSKMRHAGEAV 213

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+R M        N+ +L SVL A   +  L+LG  +  +++      +  + SAL  M
Sbjct: 214 GLFREMME-AGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHM 272

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG +  AR+IFD M  +D V+W AMI  Y Q G  EE   LF ++  S   P+  T 
Sbjct: 273 YGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G+L+ACA   A +LGKQV  Y +  G+    +  +ALV MY+KCG+++N+ +VF GMP 
Sbjct: 333 IGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPN 392

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGL 381
            + VSW ++I+  A +G   +AL  F+ ++  G    P+ I FVGVL+AC HAGLVD+G 
Sbjct: 393 KNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGR 452

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + FH +    GL    +HY+C+VDL +R+G   EA D +  MP KPD+ +  +LLG C+ 
Sbjct: 453 RLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQK 512

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             N+D+++R  + L E+EP N   YV  + +YA+
Sbjct: 513 RKNIDISERVMKLLLELEPSNSGNYVISSKLYAN 546



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 213/445 (47%), Gaps = 56/445 (12%)

Query: 22  SHPSPS------IYSSLIQFCRQNRALEEGKKVHSHLKSSGF-KPGVFISNCLLDMYAKC 74
           S P+P+       ++SL+Q C    ++++ K++H+ L ++   KP     N  L   A  
Sbjct: 22  SKPNPNRQALSDKFNSLLQQCL---SIKQLKQIHAQLLTNSIHKP-----NSFLYKIADL 73

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
            + + A   F  + +    S+N MI G +                               
Sbjct: 74  KDFAYASVFFSNILDPTEYSFNVMIRGLSTA----------------------------- 104

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
            +N+   AL+ Y  M+ F     N  T   +  A S +  +  G+  H  ++R G D D 
Sbjct: 105 -WNKSSLALEFYSRMK-FLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDG 162

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V  +L  MY +CG + +AR++FD++  +D+VSW +MI  Y +     E   LF E++++
Sbjct: 163 HVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEA 222

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G +PN  +   VL AC +    +LG  V  ++         F  SAL+HMY KCG++ ++
Sbjct: 223 GFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSA 282

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +++F+ M + D V+W ++I GYAQNGM ++A++ F+ +  S T PD I  +G+L+AC   
Sbjct: 283 RRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASI 342

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           G +D G Q      E+    +  D Y    +VD+ A+ G    A  V   MP K ++  W
Sbjct: 343 GALDLGKQVEIYASER---GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNK-NEVSW 398

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFE 457
            +++     HG      + A ALF+
Sbjct: 399 NAMISALAFHGQ----AQEALALFK 419


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 159/402 (39%), Positives = 236/402 (58%), Gaps = 36/402 (8%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           GSL  AR +F+++P    F+  ++I GY   N P +A+  Y++M   +    ++FT  S+
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMM-LQGLDPDRFTFPSL 84

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
             +      L  GK++H +  + GF SD  + + L +MY  CG +  AR++FDKMV++ V
Sbjct: 85  FKSCGV---LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV 141

Query: 226 VSWTAMIGRYFQ--------------------------------EGRREEGFALFSELIK 253
           VSW  MIG Y Q                                +   EE  +LF+E+  
Sbjct: 142 VSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQL 201

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           SG++ +  T A +L AC    A ELGK +H Y+ +   +      +ALV MY+KCG++E+
Sbjct: 202 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 261

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           + +VF  MP  D+++WT+LI G A  G   KALE F  +  S  +PD I FVGVL AC+H
Sbjct: 262 AMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 321

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           AGLV++G+ YF+S+  K+G+  + +HY C+VD+L R+GR  EAED+I  MPM PD F+  
Sbjct: 322 AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV 381

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            LL  CRIHGNL +A+RAA+ L E++P+N  TYV ++NIY+S
Sbjct: 382 GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSS 423



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 176/376 (46%), Gaps = 47/376 (12%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           PS++ S    C       EGK++H H    GF    +I N L++MY+ CG +  A+ +FD
Sbjct: 82  PSLFKSCGVLC-------EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFD 134

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALD 144
           +M  + V S+ TMI  + +     +A  LF  M    N F W  MI+G+V  +   EAL 
Sbjct: 135 KMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALS 194

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L+  MQ       +K T++S+L A + +  L LGK +H YI +   + D  + +AL DMY
Sbjct: 195 LFNEMQ-LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMY 253

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            KCGSI  A ++F +M ++DV++WTA+I      G+  +   LF E+  S ++P+A TF 
Sbjct: 254 AKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFV 313

Query: 265 GVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           GVL AC+       G      M  + G  P       +V M  + G +  ++ +   MP 
Sbjct: 314 GVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP- 372

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-THAGLV--DKG 380
                                              PD+ V VG+L+AC  H  LV  ++ 
Sbjct: 373 ---------------------------------MAPDYFVLVGLLSACRIHGNLVVAERA 399

Query: 381 LQYFHSIKEKHGLTYT 396
            Q    +  K+G TY 
Sbjct: 400 AQQLIELDPKNGGTYV 415



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 14/171 (8%)

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           DP+S +           G++  ++ VFN +P P   +  S+I GY    +P +A+ +++L
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA--CIVDLLA 408
           ++  G  PD   F  +  +C   G++ +G Q + HS K    L + +D Y    ++++ +
Sbjct: 69  MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTK----LGFASDAYIQNTLMNMYS 121

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
             G    A  V  KM  K     WA+++G    +   DL   A +    +E
Sbjct: 122 NCGCLVSARKVFDKMVNK-SVVSWATMIGA---YAQWDLPHEAIKLFRRME 168


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 272/493 (55%), Gaps = 41/493 (8%)

Query: 24  PSPSIYSSLIQFCRQ--NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS--- 78
           P    +++LI    Q  N A     ++H  +  SG    + +SN L+ +Y KC       
Sbjct: 161 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 220

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           DA+ + DEM ++D  ++ TM+ G+ + G +  AR++F+E+  + +  W AMISGYV+   
Sbjct: 221 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 280

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR--TGFDSDEV- 195
             +A +L+R M + E    ++FT +SVLSA +       GK +HG I+R    F  +   
Sbjct: 281 CADAFELFRRMVS-EKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAAL 339

Query: 196 -VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA------------------------ 230
            V +AL  +Y K G I  A++IFD M  +DVVSW                          
Sbjct: 340 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK 399

Query: 231 -------MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
                  M+  Y   G  E+   LF+++    ++P  +T+AG + AC +  A + G+Q+H
Sbjct: 400 NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 459

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            ++ + G++  + A +AL+ MY+KCG V +++ VF  MP  D VSW ++I+   Q+G   
Sbjct: 460 AHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGR 519

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +ALE F+ ++  G  PD I F+ +LTAC HAGLVD+G  YF S+K   G++   DHYA +
Sbjct: 520 EALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL 579

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +DLL RSGR  EA D+I  MP +P   +W ++L GCR +G+++    AA+ LF + P++ 
Sbjct: 580 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 639

Query: 464 ATYVTMANIYASA 476
            TY+ ++N Y++A
Sbjct: 640 GTYILLSNTYSAA 652



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 193/402 (48%), Gaps = 34/402 (8%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C   RL  A  +LH  SHP  ++   LI        L       + L  S   PG   + 
Sbjct: 46  CLHARLLTA-DLLHAPSHPHLTL--RLIHL----YTLSPDLATPAALFRSDPDPGPVAAT 98

Query: 66  CLLDMYAKCGNISDAQTLFDEMQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEM----- 118
            L+  +A  G + DA   FD +    RD   +N M+S F +      A ++F  +     
Sbjct: 99  SLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGS 158

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
            + D++S+TA+IS   + +  + A    ++  +   S +     ++VLS  +A+  L + 
Sbjct: 159 LRPDDYSFTALISAVGQMHN-LAAPHCTQLHCSVLKSGA-----AAVLSVSNALIALYMK 212

Query: 179 KEIHGY------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
            +          ++    D D++ W+ +   Y + G +N AR +F+++  +  V W AMI
Sbjct: 213 CDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMI 272

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y Q G   + F LF  ++   +  + FTF  VL+ACA+      GK VHG + R+  +
Sbjct: 273 SGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPN 332

Query: 293 PYSFAA----SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
               AA    +ALV +YSK G +  +K++F+ M   D+VSW ++++GY  +G  DKA+E 
Sbjct: 333 FVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEV 392

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           F+++       + + ++ +++   H GL +  L+ F+ ++ +
Sbjct: 393 FKVM----PYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAE 430



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 38/239 (15%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL++ +Q+      P    Y+  I  C +  AL+ G+++H+HL   GF+      N L
Sbjct: 418 EDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNAL 477

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L MYAKCG ++DA+ +F  M   D  S+N MIS   + G   +A  LFD+M         
Sbjct: 478 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVA------- 530

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                        E +D             ++ +  ++L+A +    +  G      + R
Sbjct: 531 -------------EGID------------PDRISFLTILTACNHAGLVDEGFHYFESMKR 565

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEG 244
             G    E  ++ L D+ G+ G I EAR +   M      S W A++      G  E G
Sbjct: 566 DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFG 624


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 235/383 (61%), Gaps = 5/383 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN--FE 153
           N+++  ++K   L+  R LFDEMP+RDN S+  +I+ Y         L L+R MQ   F+
Sbjct: 473 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 532

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
             V      +++LS   ++  + +GK+IH  ++  G  S++++ +AL DMY KCG ++ A
Sbjct: 533 RQV---LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 589

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           +  F    ++  +SWTA+I  Y Q G+ EE   LFS++ ++G+RP+  TF+ ++ A +  
Sbjct: 590 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 649

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           A   LG+Q+H Y+ R GY    F+ S LV MY+KCG ++ + + F+ MP  + +SW ++I
Sbjct: 650 AMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVI 709

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           + YA  G    A++ FE +L  G  PD + F+ VL AC+H GL D+ ++YFH +K ++ +
Sbjct: 710 SAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSI 769

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
           +   +HYAC++D L R G F + + ++ +MP K D  +W S+L  CRIHGN +LA+ AA+
Sbjct: 770 SPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAAD 829

Query: 454 ALFEIEPENPATYVTMANIYASA 476
            LF +EP +   YV ++NIYA A
Sbjct: 830 KLFGMEPTDATPYVILSNIYARA 852



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 147/307 (47%), Gaps = 34/307 (11%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++++        +  GK++H+ L   G      + N L+DMY+KCG +  A++ F    
Sbjct: 538 YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS 597

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E+   S+  +I+G+ + G  E+A  LF +M +R                           
Sbjct: 598 EKSAISWTALITGYVQNGQHEEALQLFSDM-RRAGLR----------------------- 633

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    ++ T SS++ A S++  + LG+++H Y++R+G+ S     S L DMY KCG
Sbjct: 634 --------PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCG 685

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            ++EA + FD+M +R+ +SW A+I  Y   G  +    +F  ++  G  P++ TF  VL 
Sbjct: 686 CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLA 745

Query: 269 ACADHA-AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDL 326
           AC+ +  A+E  K  H    +    P+    + ++    + G     +K+   MP + D 
Sbjct: 746 ACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADP 805

Query: 327 VSWTSLI 333
           + WTS++
Sbjct: 806 IIWTSIL 812



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 189/420 (45%), Gaps = 65/420 (15%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           +GF    +  N  L      G++  A+ +FD+M  +++ S N ++S ++  G L  A++L
Sbjct: 251 TGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHL 310

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F   P R+  +WT M+  +    +  +AL L+R M   E  + ++ T+++VL+       
Sbjct: 311 FLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG-EGVIPDRVTVTTVLNLPGCTV- 368

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
                 +H + ++ G D+   V + L D Y K G +  AR++F +M D+D V++ AM+  
Sbjct: 369 ----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 424

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
             +EG   +   LF+ + ++G   +                     Q     +R      
Sbjct: 425 CSKEGLHTQALQLFAAMRRAGYSRHPLHLL----------------QYSHSRSRSTSVLN 468

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN--------------- 339
            F  ++L+  YSKC  +++ +++F+ MP  D VS+  +IA YA N               
Sbjct: 469 VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 528

Query: 340 -GMPDKALEYFELLLKSGTQPD---------HIVFVG----------VLTACTHAGLVDK 379
            G   + L Y  +L  +G+ PD          +V +G          ++   +  G++D 
Sbjct: 529 LGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 588

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP---MKPDKFLWASLL 436
               F +  EK  +++TA     ++    ++G+  EA  + S M    ++PD+  ++S++
Sbjct: 589 AKSNFSNRSEKSAISWTA-----LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 643



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 140/306 (45%), Gaps = 28/306 (9%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EALQ+   +      P  + +SS+I+       +  G+++HS+L  SG+K  VF  + L
Sbjct: 618 EEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVL 677

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ----RDN 123
           +DMYAKCG + +A   FDEM ER+  S+N +IS +   G  + A  +F+ M       D+
Sbjct: 678 VDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDS 737

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            ++ ++++         E +  + +M++  +    K   + V+  +  + C     ++  
Sbjct: 738 VTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF---SQVQK 794

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK---MVDRDVVSWTAMIGRYFQEGR 240
            ++   F +D ++W+++       G+   AR   DK   M   D   +  +   Y + G+
Sbjct: 795 MLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQ 854

Query: 241 REEGFALFSELIKSGIRPNA-----------FTFAG--VLNACADHAAEELGKQVHGYMT 287
            E+   +   +   G+R  +           ++FA   + +   D   +EL + ++  M 
Sbjct: 855 WEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDR-LYKEMD 913

Query: 288 RIGYDP 293
           + GY P
Sbjct: 914 KQGYKP 919


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 267/474 (56%), Gaps = 6/474 (1%)

Query: 5   LCNQRRLKEALQILHQ--ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           LC   RL++AL+   +  +   +  ++S L + CR  R L   +++H+   +SG     F
Sbjct: 21  LCATGRLRDALRRPFRGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRF 77

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +N L+  YA  G+++ A+ LF+ +  R+V S+N +  G+ K G L  AR LFDEMP+R+
Sbjct: 78  TANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERN 137

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             +W AM++G        E+L  +  M+  E    ++F L SV    + ++ +  G+++H
Sbjct: 138 VATWNAMVAGLTNLGFDEESLGFFLDMRR-EGMHPDEFGLGSVFRCCAGLRDVVTGRQVH 196

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
            Y++R+G D D  V S+L+ MY +CG + E   +   +    +VS   +I    Q G  E
Sbjct: 197 AYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSE 256

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F  +   G+  +  TF   +++C+D AA   G+Q+HG + + G D      + LV
Sbjct: 257 GALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLV 316

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           HMYS+CG + +S++VF G    D    +++I+ Y  +G   KA+E F+ ++  G +P  +
Sbjct: 317 HMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDV 376

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ +L AC+H+GL ++G+  F  + + +G+  +  HY C+VDLL RSG   EAE +I  
Sbjct: 377 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 436

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           MP+ PD  +W +LL  C+   N D+A+R A+ + E++P + A+YV ++NI A++
Sbjct: 437 MPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATS 490


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 161/452 (35%), Positives = 259/452 (57%), Gaps = 32/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    SS ++ C     ++ G+++HS L     +P  F+   L+DMY+KCG + D    
Sbjct: 287 PSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQD---- 342

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                      AR +FD MP +D   W ++ISGY      IEA+
Sbjct: 343 ---------------------------ARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAM 375

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M   E    N+ TLS++L + +  Q     +++H   +++G+  D  V ++L D 
Sbjct: 376 SLFTNMYK-EGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDS 434

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKC  + +A ++F+     D+V++T+MI  Y Q G  EE   ++  +    I+P+AF F
Sbjct: 435 YGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIF 494

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + + NACA+ +A E GKQ+H ++ + G     FA ++LV+MY+KCG+++++  +FN +  
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISW 554

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             +VSW+++I G AQ+G   KAL+ F  +LK+G  P+HI  V VL+AC HAGLV +  ++
Sbjct: 555 RGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRF 614

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +++  G+T T +HYAC+VD+L R GR  EA  ++ +MP +    +W +LLG  RIH 
Sbjct: 615 FGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHK 674

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N++L + AAE L  +EPE   T++ +ANIYAS
Sbjct: 675 NIELGRHAAEMLLTLEPEKSGTHILLANIYAS 706



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 202/415 (48%), Gaps = 45/415 (10%)

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDN 123
           +++Y+KC     A+ L  +  E D+ S++ +ISG+ + G  E+A   + EM     + + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 124 FSWTAMISG-----YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           F++++++ G      +   + I  + L   M +   S  N+F+LS+VL+A + ++    G
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGIS-PNEFSLSTVLNACAGLEDENYG 207

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
            ++HGY+++ G+DSD    +AL DMY K G    A  +F ++   D+VSW A+I      
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLH 267

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            + +    L  ++    + P+ FT +  L ACA     +LG+Q+H  + ++  +P SF  
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
             L+ MYSKCG +++++ VF+ MP  D++ W S+I+GY+  G   +A+  F  + K G +
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLE 387

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-------DHYA--CIVDLLAR 409
            +      +L + T     +   +  H+I  K G  Y         D Y   C+++  A+
Sbjct: 388 FNQTTLSTILKS-TAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 410 SGRFHEAEDVISKMPM-------------------------KPDKFLWASLLGGC 439
                 AED+++   M                         KPD F+++SL   C
Sbjct: 447 VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC 501



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 39/255 (15%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +  LK  L++  +   P   I+SSL   C    A E+GK++H H+   G    VF  N L
Sbjct: 473 EEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSL 532

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           ++MYAKCG+I DA  +F+E+  R + S++ MI G  + G   +A  LF            
Sbjct: 533 VNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLF------------ 580

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                             Y+M++N    + N  TL SVLSA +    +   +   G + +
Sbjct: 581 ------------------YQMLKN--GILPNHITLVSVLSACNHAGLVTEARRFFGLMEK 620

Query: 188 T-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG-----RYFQEGR 240
             G    +  ++ + D+ G+ G ++EA  +  +M        W A++G     +  + GR
Sbjct: 621 LFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGR 680

Query: 241 REEGFALFSELIKSG 255
                 L  E  KSG
Sbjct: 681 HAAEMLLTLEPEKSG 695


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 156/474 (32%), Positives = 268/474 (56%), Gaps = 6/474 (1%)

Query: 5   LCNQRRLKEALQILHQ--ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           LC   RL++AL+   +  +   +  ++S L + CR  R L   +++H+   +SG     F
Sbjct: 21  LCATGRLRDALRRPFRGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRF 77

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +N L+  YA  G+++ A+ LF+ +  R+V S+N +  G+ K G L  AR LFDEMP+R+
Sbjct: 78  TANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERN 137

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             +W AM++G        E+L L+  M+  E    ++F L SV    + ++ +  G+++H
Sbjct: 138 VATWNAMVAGLTNLGFDEESLGLFLDMRR-EGMHPDEFGLGSVSRCCAGLRDVVTGRQVH 196

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
            Y++R+G D D  V S+L+ MY +CG + E   +   +    +VS   +I    Q G  E
Sbjct: 197 AYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSE 256

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F  +   G+  +  TF   +++C+D AA   G+Q+HG + + G D      + LV
Sbjct: 257 GALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLV 316

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           HMYS+CG + +S++VF G    D    +++I+ Y  +G   KA+E F+ ++  G +P  +
Sbjct: 317 HMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDV 376

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ +L AC+H+GL ++G+  F  + + +G+  +  HY C+VDLL RSG   EAE +I  
Sbjct: 377 TFLALLYACSHSGLKEEGMDCFELMTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALILS 436

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           MP+ PD  +W +LL  C+   N D+A+R A+ + E++P + A+YV ++NI A++
Sbjct: 437 MPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATS 490


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 259/457 (56%), Gaps = 38/457 (8%)

Query: 24  PSPSI---YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           P P+    Y+SL+Q C  ++AL  GK++H+     G      ++  L+ +YA        
Sbjct: 42  PQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAV------- 94

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
                                     SL  ARNLFD++P+++ F W  +I GY  +N P 
Sbjct: 95  ------------------------SNSLLNARNLFDKIPKQNLFLWNVLIRGYA-WNGPH 129

Query: 141 E-ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           + A+ LY  M ++     N FTL  VL A SA+  +  G+ IH Y++++G++ D  V +A
Sbjct: 130 DNAIILYHKMLDYGLRPDN-FTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAA 188

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY KCG + +A ++FDK+V RD V W +M+  Y Q G  +E  +L  E+  +G+RP 
Sbjct: 189 LIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPT 248

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T   V+++ AD A    G+++HG+  R G+       +AL+ MY+KCG+V+ +  +F 
Sbjct: 249 EATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFE 308

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            +    +VSW ++I GYA +G+   AL+ F+ + K   +PDHI FVGVL AC+   L+D+
Sbjct: 309 RLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKE-DRPDHITFVGVLAACSRGRLLDE 367

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G   ++ +   +G+T T  HY C++DLL   G+  EA D+I  M +KPD  +W +LL  C
Sbjct: 368 GRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSC 427

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +IHGN++LA+ A E L E+EP++   YV +AN+YA +
Sbjct: 428 KIHGNVELAELALEKLIELEPDDSGNYVILANMYAQS 464



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 159/327 (48%), Gaps = 5/327 (1%)

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           + +F    +  +  +S+L +    + L  GK++H      G   ++ + + L  +Y    
Sbjct: 37  VDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSN 96

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           S+  AR +FDK+  +++  W  +I  Y   G  +    L+ +++  G+RP+ FT   VL 
Sbjct: 97  SLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLK 156

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+  +A   G+ +H Y+ + G++   F  +AL+ MY+KCG V ++ +VF+ +   D V 
Sbjct: 157 ACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVL 216

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W S++A YAQNG PD+++     +  +G +P     V V+++      +  G +  H   
Sbjct: 217 WNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGRE-IHGFG 275

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            +HG          ++D+ A+ G    A  +  ++  K     W +++ G  +HG   LA
Sbjct: 276 WRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREK-RVVSWNAIITGYAMHG---LA 331

Query: 449 KRAAEALFEIEPENPATYVTMANIYAS 475
             A +   ++  E+   ++T   + A+
Sbjct: 332 VGALDLFDKMRKEDRPDHITFVGVLAA 358



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 29/292 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ +   ++I        L  G+++H      GF+    +   L+DMYAKCG++  A  L
Sbjct: 247 PTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALAL 306

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPI 140
           F+ ++E+ V S+N +I+G+   G    A +LFD+M +    D+ ++  +++   R     
Sbjct: 307 FERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKEDRPDHITFVGVLAACSRGRLLD 366

Query: 141 EALDLYRMM---QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           E   LY +M        +V +   +  +L       C +L  E +  I       D  VW
Sbjct: 367 EGRALYNLMVRDYGITPTVQHYTCMIDLLG-----HCGQL-DEAYDLIRNMSVKPDSGVW 420

Query: 198 SALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            AL +     G++  A    +K+++    D  ++  +   Y Q G+ E    L   +I  
Sbjct: 421 GALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDK 480

Query: 255 GIRPN-------------AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            I+ N             AF    V ++ +D    EL K++ G M   GY P
Sbjct: 481 RIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAEL-KRLEGLMHEAGYAP 531


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 267/474 (56%), Gaps = 6/474 (1%)

Query: 5   LCNQRRLKEALQILHQ--ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           LC   RL++AL+   +  +   +  ++S L + CR  R L   +++H+   +SG     F
Sbjct: 83  LCATGRLRDALRRPFRGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRF 139

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +N L+  YA  G+++ A+ LF+ +  R+V S+N +  G+ K G L  AR LFDEMP+R+
Sbjct: 140 TANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERN 199

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             +W AM++G        E+L  +  M+  E    ++F L SV    + ++ +  G+++H
Sbjct: 200 VATWNAMVAGLTNLGFDEESLGFFLDMRR-EGMHPDEFGLGSVFRCCAGLRDVVTGRQVH 258

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
            Y++R+G D D  V S+L+ MY +CG + E   +   +    +VS   +I    Q G  E
Sbjct: 259 AYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSE 318

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F  +   G+  +  TF   +++C+D AA   G+Q+HG + + G D      + LV
Sbjct: 319 GALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLV 378

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           HMYS+CG + +S++VF G    D    +++I+ Y  +G   KA+E F+ ++  G +P  +
Sbjct: 379 HMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDV 438

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ +L AC+H+GL ++G+  F  + + +G+  +  HY C+VDLL RSG   EAE +I  
Sbjct: 439 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 498

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           MP+ PD  +W +LL  C+   N D+A+R A+ + E++P + A+YV ++NI A++
Sbjct: 499 MPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATS 552


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 164/446 (36%), Positives = 256/446 (57%), Gaps = 33/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +S++  C   +AL++G++VH++          F+ N L+DMYAKC               
Sbjct: 360 TSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCD-------------- 405

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                            SL  AR +FD +   +  S+ AMI GY R ++ +EALDL+R M
Sbjct: 406 -----------------SLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREM 448

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +    S     T  S+L   S++  L L  +IH  I++ G   D    SAL D+Y KC  
Sbjct: 449 R-LSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSC 507

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + +AR +F+++ DRD+V W AM   Y Q+   EE   L+ +L  S ++PN FTFA V+ A
Sbjct: 508 VGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAA 567

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
            ++ A+   G+Q H  + ++G D   F  ++LV MY+KCG++E S K F+   + D+  W
Sbjct: 568 ASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACW 627

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            S+I+ YAQ+G   KALE FE ++  G +P+++ FVG+L+AC+HAGL+D G  +F S+  
Sbjct: 628 NSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM-S 686

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           K G+    DHYAC+V LL R+G+ +EA++ + KMP+KP   +W SLL  CR+ G+++L  
Sbjct: 687 KFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGT 746

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            AAE     +P +  +Y+ ++NI+AS
Sbjct: 747 YAAEMAISCDPADSGSYILLSNIFAS 772



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 215/415 (51%), Gaps = 34/415 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  I +S+++ C Q   L +  ++H  +   GF   V++   L+D YAK G +      
Sbjct: 152 PNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYV------ 205

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                    ++AR +FD +  +   +WTA+I+GY +  +   +L
Sbjct: 206 -------------------------DEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSL 240

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M+   +   +++ +SSVLSA S ++ L  GK+IHGY++R GFD D  V + + D 
Sbjct: 241 KLFNQMRE-GDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDF 299

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +   R++F+++VD+DVVSWT MI    Q     +   LF E+++ G +P+AF  
Sbjct: 300 YLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGC 359

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VLN+C    A + G+QVH Y  ++  D   F  + L+ MY+KC ++ N++KVF+ +  
Sbjct: 360 TSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAA 419

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++VS+ ++I GY++     +AL+ F  +  S + P  + FV +L   +   L++   Q 
Sbjct: 420 INVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQ- 478

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            H +  K G++  +   + ++D+ ++     +A  V  ++    D  +W ++  G
Sbjct: 479 IHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEI-YDRDIVVWNAMFSG 532



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 194/377 (51%), Gaps = 47/377 (12%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF-KPGVFISNC 66
           QR++   L  L Q+  PSP+I +S              KK+H+H+   GF +  VF+ N 
Sbjct: 46  QRKIGRELGKLLQL--PSPNILTS-----------HYYKKIHAHIVVLGFHQHDVFLVNT 92

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LL  Y+K    SD                               A+ LFD MP R+  +W
Sbjct: 93  LLHAYSKMNLQSD-------------------------------AQKLFDTMPHRNLVTW 121

Query: 127 TAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           ++M+S Y ++   +EAL L+ R M++      N++ L+SV+ A + +  L    ++HG++
Sbjct: 122 SSMVSMYTQHGYSVEALLLFCRFMRSCSEK-PNEYILASVVRACTQLGNLSQALQLHGFV 180

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ GF  D  V ++L D Y K G ++EAR IFD +  +  V+WTA+I  Y + GR E   
Sbjct: 181 VKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSL 240

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF+++ +  + P+ +  + VL+AC+     E GKQ+HGY+ R G+D      + ++  Y
Sbjct: 241 KLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFY 300

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KC  V+  +K+FN +   D+VSWT++IAG  QN     A++ F  +++ G +PD     
Sbjct: 301 LKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCT 360

Query: 366 GVLTACTHAGLVDKGLQ 382
            VL +C     + KG Q
Sbjct: 361 SVLNSCGSLQALQKGRQ 377


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 267/474 (56%), Gaps = 6/474 (1%)

Query: 5   LCNQRRLKEALQILHQ--ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           LC   RL++AL+   +  +   +  ++S L + CR  R L   +++H+   +SG     F
Sbjct: 21  LCATGRLRDALRRPFRGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRF 77

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +N L+  YA  G+++ A+ LF+ +  R+V S+N +  G+ K G L  AR LFDEMP+R+
Sbjct: 78  TANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERN 137

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             +W AM++G        E+L  +  M+  E    ++F L SV    + ++ +  G+++H
Sbjct: 138 VATWNAMVAGLTNLGFDEESLGFFLDMRR-EGMHPDEFGLGSVFRCCAGLRDVVTGRQVH 196

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
            Y++R+G D D  V S+L+ MY +CG + E   +   +    +VS   +I    Q G  E
Sbjct: 197 AYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSE 256

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F  +   G+  +  TF   +++C+D AA   G+Q+HG + + G D      + LV
Sbjct: 257 GALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLV 316

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           HMYS+CG + +S++VF G    D    +++I+ Y  +G   KA+E F+ ++  G +P  +
Sbjct: 317 HMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDV 376

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ +L AC+H+GL ++G+  F  + + +G+  +  HY C+VDLL RSG   EAE +I  
Sbjct: 377 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 436

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           MP+ PD  +W +LL  C+   N D+A+R A+ + E++P + A+YV ++NI A++
Sbjct: 437 MPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATS 490


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 255/456 (55%), Gaps = 38/456 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y  +   C     L  G+  HS +  SG      + + L+ MY++CG +      
Sbjct: 124 PNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELG----- 178

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                    C                 AR +FDE+ ++D  SW +MISGY R     +A+
Sbjct: 179 ---------C-----------------ARRVFDEISEKDLVSWNSMISGYSRMGYAGDAV 212

Query: 144 DLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
            L+  M++  FE    ++ TL S+L A   +  L LG  I G+++    D +  V SAL 
Sbjct: 213 GLFGEMRDAGFE---PDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALI 269

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
            MYGKCG ++ AR++FD+MV +DVV+W AMI  Y Q G  +E   LFS + +SG+ P+  
Sbjct: 270 GMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKI 329

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T  GVL+ACA   A + GK +  Y +  G     + ++AL+ MY+KCG+++++ +VF  M
Sbjct: 330 TLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDM 389

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDK 379
           P+ + VSW ++I+  A +G P ++L  F+ + K G   +P+ I F+GVL+AC HAGLVD+
Sbjct: 390 PQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDE 449

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G Q F  +    GL    +H++C+VDLLAR+G  HEA D I KMP KPD+ +  +LLG C
Sbjct: 450 GRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGAC 509

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +   N+D+++R    L E+EP N   Y+  + I+A+
Sbjct: 510 QKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFAN 545



 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 216/433 (49%), Gaps = 23/433 (5%)

Query: 47  KVHSHLKSSGFKPGV---------FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNT 97
           K  SHL S  F   +          +++ LL +  +C +    Q +  +M    +   N 
Sbjct: 5   KASSHLISRHFTKALAKSQRHAQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNF 64

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG----YVRYNQPIEALDLYRMMQNFE 153
           ++  F        A  LF ++P  + +++  MI G    + ++N  IE    Y  M++F 
Sbjct: 65  LLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIE---FYYQMKDF- 120

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
               N FT   V  A + +  L  G+  H  ++++G  +D  V  +L  MY +CG +  A
Sbjct: 121 GIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCA 180

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           R++FD++ ++D+VSW +MI  Y + G   +   LF E+  +G  P+  T   +L AC D 
Sbjct: 181 RRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDL 240

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               LG  + G++     D  SF  SAL+ MY KCG++ ++++VF+ M + D+V+W ++I
Sbjct: 241 GDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMI 300

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            GYAQNG+ D+A+  F  + +SG  PD I  VGVL+AC   G +D G ++  +   + GL
Sbjct: 301 TGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFG-KWLDTYASERGL 359

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG----NLDLAK 449
                    ++D+ A+ G   +A  V   MP K ++  W +++     HG    +L L K
Sbjct: 360 QNDIYVSTALIDMYAKCGSLDDALRVFEDMPQK-NEVSWNAMISALAFHGRPQESLSLFK 418

Query: 450 RAAEALFEIEPEN 462
           R ++    + P +
Sbjct: 419 RMSKEGGAVRPND 431



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P       ++  C    AL+ GK + ++    G +  +++S  L+DMYAKCG++ DA  
Sbjct: 325 NPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALR 384

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR------DNFSWTAMISGYVRY 136
           +F++M +++  S+N MIS     G  +++ +LF  M +       ++ S+  ++S  V  
Sbjct: 385 VFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHA 444

Query: 137 NQPIEALDLYRMMQN 151
               E   L+ +M +
Sbjct: 445 GLVDEGRQLFDLMSS 459


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 254/453 (56%), Gaps = 18/453 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+++ C + R L  G+ VH H   +G    +F  N L+ MYAKCG+++ A+ +
Sbjct: 148 PDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKV 207

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M +RDV S+N+MIS +   G   +A  LF  M  RD               +  E +
Sbjct: 208 FDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRM--RD---------------EGTEPV 250

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L R M      V +  TL   L+A S +  LRLGKEIHG  +R   D  E V +AL  M
Sbjct: 251 GLIREMVRGGAEV-DYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITM 309

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +C  +  AR +F  +    VV+W  M+  +      EE  ++F E+I  G++PN  T 
Sbjct: 310 YARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTV 369

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L  CA  A  + G+++HG++ + G+  Y    ++L+ MYSK G +  ++ VF+ M  
Sbjct: 370 VTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDD 429

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D++S+TS+IAGY   G    AL  FE ++ SG +PDHI+ V VL+AC+H+GLV +G + 
Sbjct: 430 CDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEEL 489

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+ +   +G+    +HY+C++DL AR+G   +AE+++   P  P   +WA+L+G C   G
Sbjct: 490 FNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRG 549

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N+++ +RAA  L E+  EN   YV +AN+YA+A
Sbjct: 550 NIEIGERAARKLLEMRTENAGHYVLIANMYAAA 582



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 21/160 (13%)

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           + E+ K+G+ P+ FT+  VL ACA+     LG+ VH +    G D   F  +AL+ MY+K
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-------- 359
           CG++ +++KVF+GM + D+VSW S+I+ YA  G   +A+E F  +   GT+P        
Sbjct: 198 CGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMV 257

Query: 360 ------DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
                 D++  V  L AC+  G +  G       KE HGL
Sbjct: 258 RGGAEVDYVTLVIGLNACSRVGWLRLG-------KEIHGL 290


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 249/446 (55%), Gaps = 33/446 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C +   L  G+ VH +   +GF     ++N LLDMY+ C +      +F  M ++
Sbjct: 302 SVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQK 361

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +V                                SWTAMI+ Y R     +   L++ M 
Sbjct: 362 NV-------------------------------VSWTAMITSYTRAGLYDKVAGLFQEM- 389

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E +  + F ++S L A +  + L+ GK +HGY +R G +    V +AL +MY KCG++
Sbjct: 390 GLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNM 449

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EA+ IFD +V +D++SW  +IG Y +     E F+LF+E++   +RPNA T   +L A 
Sbjct: 450 EEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAA 508

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  ++ E G+++H Y  R GY    F A+AL+ MY KCG +  ++++F+ +   +L+SWT
Sbjct: 509 ASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWT 568

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            ++AGY  +G    A+  FE +  SG  PD   F  +L AC+H+GL D+G ++F +++++
Sbjct: 569 IMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKE 628

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           H +     HY C+VDLL  +G   EA + I  MP++PD  +W SLL GCRIH N+ LA+ 
Sbjct: 629 HKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEE 688

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 689 VAERVFELEPENTGYYVLLANIYAEA 714



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 230/455 (50%), Gaps = 19/455 (4%)

Query: 11  LKEALQILHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           L+ A ++  ++   S   ++++L+    +   L EG  +   +   G +P  +  +C+L 
Sbjct: 145 LENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLK 204

Query: 70  MYAKCGNISDAQT---LFDEMQERDVCSY-NTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
             A  G+I D +    L +++     C+  N +++ + K    + A  +FD MP RD  S
Sbjct: 205 CIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVIS 264

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W +MISG        +A++L+  M   E    +  TL SVL A + +  L LG+ +HGY 
Sbjct: 265 WNSMISGCTSNGLYDKAIELFVRMW-LEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++TGF S   + + L DMY  C       +IF  MV ++VVSWTAMI  Y + G  ++  
Sbjct: 324 VKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVA 383

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF E+   G RP+ F     L+A A +   + GK VHGY  R G +      +AL+ MY
Sbjct: 384 GLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMY 443

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVF 364
            KCGN+E +K +F+G+   D++SW +LI GY++N + ++A   F E+LL+   +P+ +  
Sbjct: 444 VKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ--LRPNAVTM 501

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISK 422
             +L A      +++G +  H+   + G  Y  D +    ++D+  + G    A  +  +
Sbjct: 502 TCILPAAASLSSLERGRE-MHAYALRRG--YLEDDFVANALIDMYVKCGALLLARRLFDR 558

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           +  K +   W  ++ G  +HG      R A ALFE
Sbjct: 559 LSNK-NLISWTIMVAGYGMHGR----GRDAIALFE 588



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 223/483 (46%), Gaps = 50/483 (10%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF-KPG 60
           I  LC    L+EAL +L        S Y +++Q C + R+LE GK+ H  +++S   + G
Sbjct: 68  IQRLCRSGDLEEALGLLGSDGVDDRS-YGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDG 126

Query: 61  V--FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           +   +   L+ MY KCG+                               LE AR +FDEM
Sbjct: 127 MDNVLGQKLVLMYLKCGD-------------------------------LENARRVFDEM 155

Query: 119 PQ-RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           PQ  D   WTA++SGY +     E + L+R M        + +T+S VL  ++ +  +  
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCC-GVRPDAYTISCVLKCIAGLGSIED 214

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+ +HG + + GF S   V +AL   Y K     +A  +FD M  RDV+SW +MI     
Sbjct: 215 GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTS 274

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  ++   LF  +   G   ++ T   VL ACA+     LG+ VHGY  + G+   +  
Sbjct: 275 NGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSL 334

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+ L+ MYS C +  ++ K+F  M + ++VSWT++I  Y + G+ DK    F+ +   GT
Sbjct: 335 ANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGT 394

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD       L A     L+  G +  H    ++G+         ++++  + G   EA+
Sbjct: 395 RPDIFAITSALHAFAGNELLKHG-KSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAK 453

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA----AEALFEIEPENPATYVTMANIY 473
            +   +  K D   W +L+GG   +   +LA  A     E L ++ P      VTM  I 
Sbjct: 454 LIFDGVVSK-DMISWNTLIGG---YSRNNLANEAFSLFTEMLLQLRP----NAVTMTCIL 505

Query: 474 ASA 476
            +A
Sbjct: 506 PAA 508


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 267/474 (56%), Gaps = 6/474 (1%)

Query: 5   LCNQRRLKEALQILHQ--ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           LC   RL++AL+   +  +   +  ++S L + CR  R L   +++H+   +SG     F
Sbjct: 87  LCATGRLRDALRRPFRGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRF 143

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +N L+  YA  G+++ A+ LF+ +  R+V S+N +  G+ K G L  AR LFDEMP+R+
Sbjct: 144 TANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERN 203

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             +W AM++G        E+L  +  M+  E    ++F L SV    + ++ +  G+++H
Sbjct: 204 VATWNAMVAGLTNLGFDEESLGFFLDMRR-EGMHPDEFGLGSVFRCCAGLRDVVTGRQVH 262

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
            Y++R+G D D  V S+L+ MY +CG + E   +   +    +VS   +I    Q G  E
Sbjct: 263 AYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSE 322

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                F  +   G+  +  TF   +++C+D AA   G+Q+HG + + G D      + LV
Sbjct: 323 GALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLV 382

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           HMYS+CG + +S++VF G    D    +++I+ Y  +G   KA+E F+ ++  G +P  +
Sbjct: 383 HMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDV 442

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ +L AC+H+GL ++G+  F  + + +G+  +  HY C+VDLL RSG   EAE +I  
Sbjct: 443 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 502

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           MP+ PD  +W +LL  C+   N D+A+R A+ + E++P + A+YV ++NI A++
Sbjct: 503 MPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATS 556


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/446 (36%), Positives = 247/446 (55%), Gaps = 33/446 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C Q+     G  VH +   +G      + N LLDMY+ C +      +F  M+++
Sbjct: 90  SVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQK 149

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +V                                SWTAMI+ Y R     +   L++ M 
Sbjct: 150 NV-------------------------------VSWTAMITSYTRAGHFDKVAGLFQEM- 177

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    + F ++S L A +  + L+ GK +HGY +R G +    V +AL +MY KCG +
Sbjct: 178 GLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYM 237

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EAR IFD +  +D +SW  +IG Y +     E F LF+E++   +RPNA T A +L A 
Sbjct: 238 EEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAA 296

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  ++ E G+++H Y  R GY   +F A+ALV MY KCG +  ++++F+ +   +L+SWT
Sbjct: 297 ASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWT 356

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +IAGY  +G    A+  FE +  SG QPD   F  +L AC+H+GL D+G ++F++++ +
Sbjct: 357 IMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNE 416

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           H +     HYAC+VDLL  +G   EA + I  MP++PD  +W SLL GCRIH N+ LA++
Sbjct: 417 HRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEK 476

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 477 VAEMVFELEPENTGYYVLLANIYAEA 502



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 200/417 (47%), Gaps = 45/417 (10%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           +G  VH +L   GF     + N L+  YAK   I DA  +FDEM +RD+ S+N++I G  
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
             G  ++A  LF  M       W                          E    +  TL 
Sbjct: 62  SNGLYDKAVELFVRM-------W-------------------------LEGQELDSTTLL 89

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SV+ A        +G  +HGY +RTG  S+  + +AL DMY  C       +IF  M  +
Sbjct: 90  SVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQK 149

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           +VVSWTAMI  Y + G  ++   LF E+   GIRP+ F     L+A A + + + GK VH
Sbjct: 150 NVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVH 209

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           GY  R G +     A+AL+ MY KCG +E ++ +F+ + + D +SW +LI GY+++ + +
Sbjct: 210 GYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLAN 269

Query: 344 KALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA- 401
           +A   F E+LL+   +P+ +    +L A      +++G +  H+   + G  Y  D++  
Sbjct: 270 EAFTLFNEMLLQ--LRPNAVTMACILPAAASLSSLERGRE-MHAYAVRRG--YLEDNFVA 324

Query: 402 -CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
             +VD+  + G    A  +   +  K +   W  ++ G  +HG      R A ALFE
Sbjct: 325 NALVDMYVKCGALLLARRLFDMLTNK-NLISWTIMIAGYGMHGR----GRDAIALFE 376



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 5/299 (1%)

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G  +HGY+++ GF +   V +AL   Y K   I +A  +FD+M  RD++SW ++IG    
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  ++   LF  +   G   ++ T   V+ AC       +G  VHGY  R G    +  
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +AL+ MYS C +  ++ K+F  M + ++VSWT++I  Y + G  DK    F+ +   G 
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD       L A      +  G +  H    ++G+         ++++  + G   EA 
Sbjct: 183 RPDVFAITSALDAFAGNESLKHG-KSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +   +  K D   W +L+GG   +   +LA  A     E+  +     VTMA I  +A
Sbjct: 242 FIFDHVT-KKDTISWNTLIGG---YSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAA 296


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 287/547 (52%), Gaps = 78/547 (14%)

Query: 5   LCNQRRLKEALQILHQISH----PSPSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFK 58
           L    R +EA  +  Q+      P+ + Y S++         ALE  K VH H + +GF 
Sbjct: 396 LAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFI 455

Query: 59  PGVFISNCLLDMYAKCGNISDAQ-------------------------------TLFDEM 87
             + I N L+ MYAKCG+I DA+                               T+F +M
Sbjct: 456 SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQM 515

Query: 88  QER----DVCSY----NT---------------------MISGFTKG----------GSL 108
           Q+     D  +Y    NT                     +IS F  G          GS+
Sbjct: 516 QQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSI 575

Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
           + AR LFD++  R   +W AMI G  +     EAL L+  MQ  E  + +  T  ++LSA
Sbjct: 576 DDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQR-EGFIPDATTFINILSA 634

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
               + L   KE+H +    G   D  V +AL   Y KCG++  A+Q+FD MV+R+V +W
Sbjct: 635 NVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTW 693

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T MIG   Q G   + F+ F ++++ GI P+A T+  +L+ACA   A E  K+VH +   
Sbjct: 694 TMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVS 753

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G        +ALVHMY+KCG++++++ VF+ M   D+ SWT +I G AQ+G   +AL++
Sbjct: 754 AGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDF 813

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  +   G +P+   +V VLTAC+HAGLVD+G + F S+ + +G+  T +HY C+VDLL 
Sbjct: 814 FVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLG 873

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G   EAE  I  MP++PD   W +LLG C  +GNL++A+ AA+   +++P++ +TYV 
Sbjct: 874 RAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVL 933

Query: 469 MANIYAS 475
           ++NIYA+
Sbjct: 934 LSNIYAA 940



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 230/452 (50%), Gaps = 41/452 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y +++Q C +   +   K+VH  +  SG +  ++++N LL +Y +CG             
Sbjct: 121 YVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGR------------ 168

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                              L+ AR +FD++ +++ + WT MI GY  Y    +A+ +Y  
Sbjct: 169 -------------------LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK 209

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+  E    N+ T  S+L A      L+ GK+IH +I+++GF SD  V +AL +MY KCG
Sbjct: 210 MRQ-ECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCG 268

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SI +A+ IFDKMV+R+V+SWT MIG     GR +E F LF ++ + G  PN++T+  +LN
Sbjct: 269 SIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILN 328

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A A   A E  K+VH +    G        +ALVHMY+K G++++++ VF+GM   D+ S
Sbjct: 329 ANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFS 388

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD-KGLQYFHSI 387
           WT +I G AQ+G   +A   F  + ++G  P+   ++ +L A   A     + ++  H  
Sbjct: 389 WTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKH 448

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            E+ G          ++ + A+ G   +A  V   M  + D   W +++GG   +G    
Sbjct: 449 AEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMMGGLAQNG---C 504

Query: 448 AKRAAEALFEIEPE----NPATYVTMANIYAS 475
              A     +++ E    +  TY+++ N + S
Sbjct: 505 GHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGS 536



 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 138/429 (32%), Positives = 225/429 (52%), Gaps = 44/429 (10%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++  +   P+   Y S+++ C     L+ GKK+H+H+  SGF+  V +   L++MY KCG
Sbjct: 209 KMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCG 268

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           +I DAQ +FD+M ER+V S+  MI G    G  ++A +LF +M QR+ F           
Sbjct: 269 SIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQM-QREGF----------- 316

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                               + N +T  S+L+A ++   L   KE+H + +  G   D  
Sbjct: 317 --------------------IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +AL  MY K GSI++AR +FD M +RD+ SWT MIG   Q GR +E F+LF ++ ++G
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG 416

Query: 256 IRPNAFTFAGVLN--ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             PN  T+  +LN  A A  +A E  K VH +    G+       +AL+HMY+KCG++++
Sbjct: 417 CLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDD 476

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ VF+GM   D++SW +++ G AQNG   +A   F  + + G  PD   ++ +L   TH
Sbjct: 477 ARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--TH 534

Query: 374 AGLVDKGLQYFHSIKEKH----GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
            G  D  L++ + +  KH    GL       +  + +  R G   +A  +  K+ ++   
Sbjct: 535 -GSTD-ALEWVNEV-HKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVT 591

Query: 430 FLWASLLGG 438
             W +++GG
Sbjct: 592 -TWNAMIGG 599



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/482 (29%), Positives = 233/482 (48%), Gaps = 60/482 (12%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R +EA  +  Q+      P+   Y S++       ALE  K+VHSH  ++G    + + N
Sbjct: 300 RGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN 359

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ MYAK G+I DA+ +FD M ERD+ S+  MI G  + G  ++A +LF +M QR+   
Sbjct: 360 ALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM-QRN--- 415

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL--SAVSAIQCLRLGKEIHG 183
                                         + N  T  S+L  SA+++   L   K +H 
Sbjct: 416 ----------------------------GCLPNLTTYLSILNASAIASTSALEWVKVVHK 447

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           +    GF SD  + +AL  MY KCGSI++AR +FD M DRDV+SW AM+G   Q G   E
Sbjct: 448 HAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHE 507

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
            F +F ++ + G+ P++ T+  +LN      A E   +VH +    G        SA +H
Sbjct: 508 AFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIH 567

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY +CG++++++ +F+ +    + +W ++I G AQ     +AL  F  + + G  PD   
Sbjct: 568 MYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATT 627

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL---------LARSGRFH 414
           F+ +L+    A + ++ L++   +KE H  ++  D  A +VDL          ++ G   
Sbjct: 628 FINILS----ANVDEEALEW---VKEVH--SHATD--AGLVDLRVGNALVHTYSKCGNVK 676

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHG-NLDLAKRAAEALFEIEPENPATYVTMANIY 473
            A+ V   M ++ +   W  ++GG   HG   D      + L E    +  TYV++ +  
Sbjct: 677 YAKQVFDDM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSAC 735

Query: 474 AS 475
           AS
Sbjct: 736 AS 737



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 165/323 (51%), Gaps = 9/323 (2%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + F+  ++L      + + L K++H  I+++G + +  V + L  +Y +CG +  ARQ+F
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           DK++ +++  WT MIG Y + G  E+   ++ ++ +   +PN  T+  +L AC      +
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            GK++H ++ + G+       +ALV+MY KCG++E+++ +F+ M   +++SWT +I G A
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
             G   +A   F  + + G  P+   +V +L A   AG ++  ++  HS     GL    
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE-WVKEVHSHAVNAGLALDL 355

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
                +V + A+SG   +A  V   M  + D F W  ++GG   HG     + A     +
Sbjct: 356 RVGNALVHMYAKSGSIDDARVVFDGMTER-DIFSWTVMIGGLAQHGR---GQEAFSLFLQ 411

Query: 458 IEPE----NPATYVTMANIYASA 476
           ++      N  TY+++ N  A A
Sbjct: 412 MQRNGCLPNLTTYLSILNASAIA 434



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           ++  A+    ++ GI  ++F++  +L  C       L KQVH  + + G +   + A+ L
Sbjct: 100 KDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKL 159

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + +Y +CG ++ +++VF+ + + ++  WT++I GYA+ G  + A+  ++ + +   QP+ 
Sbjct: 160 LRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNE 219

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           I ++ +L AC     +  G +  H+   + G          +V++  + G   +A+ +  
Sbjct: 220 ITYLSILKACCCPVNLKWG-KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMANIYASA 476
           KM ++ +   W  ++GG   +G     + A     +++ E    N  TYV++ N  ASA
Sbjct: 279 KM-VERNVISWTVMIGGLAHYGR---GQEAFHLFLQMQREGFIPNSYTYVSILNANASA 333



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 37/288 (12%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C        LQ+L +   P  + Y S++  C    ALE  K+VH+H  S+G    + + N
Sbjct: 705 CGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGN 764

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ MYAKCG+I DA+++FD+M ERDV S+  MI G  + G                   
Sbjct: 765 ALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHG------------------- 805

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-KEIHGY 184
                       + +EALD +  M++ E    N ++  +VL+A S    +  G ++    
Sbjct: 806 ------------RGLEALDFFVKMKS-EGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSM 852

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQ-IFDKMVDRDVVSWTAMIGRYFQEGRREE 243
               G +     ++ + D+ G+ G + EA   I +  ++ D   W A++G     G  E 
Sbjct: 853 TQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLE- 911

Query: 244 GFALFSELIKSGIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
             A F+   +  ++P +A T+  + N  A     E    V   M R G
Sbjct: 912 -MAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKG 958


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/479 (33%), Positives = 274/479 (57%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      ++ A  +  ++       +++ I  C  +   +   ++   +KSSG  P V
Sbjct: 244 VDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNV 303

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG----FTKGGSLEQARNLFDE 117
           F  + +L   A  G  +  + +   M + +  S N +  G    + K G L+ A+ +FD 
Sbjct: 304 FTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDW 363

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +PQRD   W A+ISG     Q  EAL L+  M+  E    N+ TL++VL + ++++ +  
Sbjct: 364 IPQRDLVLWNALISGCSHGAQHAEALSLFCRMRK-EGFDVNRTTLAAVLKSTASLEAISD 422

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            +++H    + GF SD  V + L D Y KC  +N A ++F+K    D++++T+MI    Q
Sbjct: 423 TRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQ 482

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               E+   LF E+++ G+ P+ F  + +LNACA  +A E GKQVH ++ +  +    FA
Sbjct: 483 CDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFA 542

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV+ Y+KCG++E++   F+G+P   +VSW+++I G AQ+G   +AL+ F  ++    
Sbjct: 543 GNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHI 602

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI    VL AC HAGLVD+  +YF+S+KE  G+  T +HYAC++DLL R+G+  +A 
Sbjct: 603 SPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAM 662

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++++ MP + +  +W +LL   R+H + +L + AAE LF +EPE   T+V +AN YASA
Sbjct: 663 ELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASA 721



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 196/412 (47%), Gaps = 53/412 (12%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
            ++L +G  +H+HL  SG    VF  N LL  Y+KC                        
Sbjct: 17  TQSLLQGAHIHAHLLKSGLF-AVF-RNHLLSFYSKC-----------------------R 51

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           + G         AR +FDE+P   + SW+++++ Y     P +AL  +R M++      N
Sbjct: 52  LPG--------SARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRC-N 102

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           +F L  VL           G ++H   M TG   D  V +AL  MYG  G ++EAR +FD
Sbjct: 103 EFVLPVVLKCAPDAG---FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFD 159

Query: 219 KM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           +   +R+ VSW  ++  Y +  R      +F E++  G++PN F F+ V+NAC      E
Sbjct: 160 EAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLE 219

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G++VH  + R GYD   F A+ALV MYSK G++  +  VF  +P  D+VSW + I+G  
Sbjct: 220 AGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCV 279

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +G    ALE    +  SG  P+      +L AC  +G  + G Q        HG    A
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQI-------HGFMVKA 332

Query: 398 ----DHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               D+Y    +VD+ A+ G   +A+ V   +P + D  LW +L+ GC  HG
Sbjct: 333 NADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQR-DLVLWNALISGCS-HG 382



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 218/466 (46%), Gaps = 46/466 (9%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           A ++  +I  P    +SSL+     N    +       ++S   +   F+    L +  K
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFV----LPVVLK 111

Query: 74  CGNISDAQTLFDEMQER-----DVCSYNTMISGFTKGGSLEQARNLFDEMP-QRDNFSWT 127
           C   +   T    +        D+   N +++ +   G +++AR +FDE   +R+  SW 
Sbjct: 112 CAPDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWN 171

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            ++S YV+ ++   A+ ++  M  +     N+F  S V++A +  + L  G+++H  ++R
Sbjct: 172 GLMSAYVKNDRCSHAVKVFGEMV-WGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIR 230

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           TG+D D    +AL DMY K G I  A  +F K+ + DVVSW A I      G  +    L
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALEL 290

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
             ++  SG+ PN FT + +L ACA   A  LG+Q+HG+M +   D  ++ A  LV MY+K
Sbjct: 291 LLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAK 350

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G ++++KKVF+ +P+ DLV W +LI+G +      +AL  F  + K G   +      V
Sbjct: 351 HGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAV 410

Query: 368 L-----------TACTHA---------------GLVDK-----GLQYFHSIKEKHGLTYT 396
           L           T   HA               GL+D       L Y + + EKHG +Y 
Sbjct: 411 LKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHG-SYD 469

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMK---PDKFLWASLLGGC 439
              +  ++  L++     +A  +  +M  K   PD F+ +SLL  C
Sbjct: 470 IIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T+  +L+  +A Q L  G  IH +++++G  +  V  + L   Y KC     AR++FD++
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            D   VSW++++  Y       +    F  +    +R N F    VL  CA  A    G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDAG--FGT 120

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN--GMPRPDLVSWTSLIAGYAQ 338
           Q+H      G     F A+ALV MY   G V+ ++ VF+  G  R + VSW  L++ Y +
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCER-NTVSWNGLMSAYVK 179

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           N     A++ F  ++  G QP+   F  V+ ACT +  ++ G +  H++  + G      
Sbjct: 180 NDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAG-RKVHAMVIRTGYDKDVF 238

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               +VD+ ++ G    A  V  K+P + D   W + + GC +HG+
Sbjct: 239 TANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGH 283


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/401 (39%), Positives = 242/401 (60%), Gaps = 9/401 (2%)

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G I +A  LFD M E+DV +   MI G+ + G L +AR LFDEMP+R+  SWT MI+GYV
Sbjct: 236 GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +  Q   A  L+ +M        N+ + +++L   +    L    E+   +         
Sbjct: 296 QNQQVDIARKLFEVMPE-----KNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSV---- 346

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           V  +A+   +G+ G + +ARQ+FD+M ++D  +W+AMI  Y ++G   +   LF  + + 
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE 406

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GIRPN  +   VL+ CA  A  + G+++H  + R  +D   + AS L+ MY KCGN+  +
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           K+VF+     D+V W S+I GYAQ+G+  +AL  F  +  SG  PD + FVGVL+AC++ 
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G V KGL+ F+S++ K+ +    +HYAC+VDLL R+G+ +EA D+I KMPM+ D  +W +
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LLG CR H  LDLA+ AA+ L  +EP+N   ++ ++NIYAS
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYAS 627



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 37/211 (17%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           PS+ S ++  C     L+ G+++H+ L  S F   V++++ LL MY KCGN++ A+ +FD
Sbjct: 413 PSLIS-VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFD 471

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
               +DV  +N++I+G+ + G   +A  +F +M                           
Sbjct: 472 RFAVKDVVMWNSIITGYAQHGLGVEALRVFHDM--------------------------- 504

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALSDM 203
                +F   + +  T   VLSA S    ++ G EI    M T +  ++ +  ++ + D+
Sbjct: 505 -----HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNS-METKYQVEQKIEHYACMVDL 558

Query: 204 YGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            G+ G +NEA  + +KM ++ D + W A++G
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLG 589


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/446 (34%), Positives = 245/446 (54%), Gaps = 32/446 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS+++ C + +AL EG++VH+ +  SGFK   F+ N L+ MYA CG I           
Sbjct: 124 FSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIG---------- 173

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                 AR++FD MP+R   +W +M+SGY +     E + L+R 
Sbjct: 174 ---------------------VARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRK 212

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           +        +  T+ SVL A   +  L +G+ I  YI+  G   +  + ++L DMY KCG
Sbjct: 213 ILELRIEFDD-VTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCG 271

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            ++ AR++FD+M  RDVV+W+AMI  Y Q  R +E   LF E+ K  + PN  T   VL 
Sbjct: 272 QVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLY 331

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA   A E GK VH Y+ +          + L+  Y+KCG ++ S +VF  M   ++ +
Sbjct: 332 SCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFT 391

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT+LI G A NG    ALE+F  +L++  +P+ + F+GVL+AC+HA LVD+G   F+S++
Sbjct: 392 WTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMR 451

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
               +    +HY C+VD+L R+G   EA   I  MP  P+  +W +LL  CR H N+++A
Sbjct: 452 RDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMA 511

Query: 449 KRAAEALFEIEPENPATYVTMANIYA 474
           +++ E +  +EP +   Y+ ++N YA
Sbjct: 512 EKSLEHITRLEPAHSGDYILLSNTYA 537



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 197/364 (54%), Gaps = 8/364 (2%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSV 165
           +++ A ++F+ + + ++ ++  MI G      P  AL L++ M   E SV  +KFT SSV
Sbjct: 70  TIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMH--EKSVQHDKFTFSSV 127

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L A S ++ LR G+++H  I+++GF S+E V + L  MY  CG I  AR +FD M +R +
Sbjct: 128 LKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSI 187

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V+W +M+  Y + G  +E   LF ++++  I  +  T   VL AC   A  E+G+ +  Y
Sbjct: 188 VAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEY 247

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           +   G    +   ++L+ MY+KCG V+ ++K+F+ M + D+V+W+++I+GYAQ     +A
Sbjct: 248 IVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEA 307

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L  F  + K    P+ +  V VL +C   G  + G ++ H   +K  +  T      ++D
Sbjct: 308 LNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG-KWVHFYIKKKKMKLTVTLGTQLID 366

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENP 463
             A+ G    + +V  +M  K + F W +L+ G   +G   +A     ++ E  ++P N 
Sbjct: 367 FYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQGLANNGEGKMALEFFSSMLENDVKP-ND 424

Query: 464 ATYV 467
            T++
Sbjct: 425 VTFI 428


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/481 (36%), Positives = 260/481 (54%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC    LK+A+ +L    +P+   +  LI  C Q  +L +G  VH  L SSGF    
Sbjct: 54  IQSLCKGGNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDP 113

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++  L++MY + G+I  A+ +FDE +ER +                             
Sbjct: 114 FLATKLINMYYELGSIDRARKVFDETRERTI----------------------------- 144

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS----AIQCLRL 177
             + W A+           E LDLY  M N+    S++FT + VL A      ++  L+ 
Sbjct: 145 --YVWNALFRALAMVGCGKELLDLYVQM-NWIGIPSDRFTYTFVLKACVVSELSVSPLQK 201

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIH +I+R G++++  V + L D+Y K GS++ A  +F  M  ++ VSW+AMI  + +
Sbjct: 202 GKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK 261

Query: 238 EGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                +   LF  ++       PN+ T   VL ACA  AA E GK +HGY+ R G D   
Sbjct: 262 NEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSIL 321

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              +AL+ MY +CG +   ++VF+ M   D+VSW SLI+ Y  +G   KA++ FE ++  
Sbjct: 322 PVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G+ P +I F+ VL AC+HAGLV++G   F S+  K+ +    +HYAC+VDLL R+ R  E
Sbjct: 382 GSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDE 441

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  +I  M  +P   +W SLLG CRIH N++LA+RA+  LFE+EP N   YV +A+IYA 
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAE 501

Query: 476 A 476
           A
Sbjct: 502 A 502


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 265/463 (57%), Gaps = 33/463 (7%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L++L +   P+ + + S+ +   Q   +E+G+ ++      G +  + +   L+DM+AKC
Sbjct: 254 LRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKC 313

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G ++++ ++F              +S F+  G                N  W AMISG+ 
Sbjct: 314 GCVTESWSVF--------------VSNFSGCGV---------------NLPWNAMISGFT 344

Query: 135 RYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
                 EA+ L+ RM QN  N   + +T  S L++++ ++ L   K++HG I ++G    
Sbjct: 345 ISGHGEEAMLLFLRMCQN--NIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGV 402

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
            +  +AL D Y KCG ++  R++FD   + + +SWT ++  Y Q    E+  ++FS++ +
Sbjct: 403 SLC-NALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMRE 461

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
            G +PN  TF+GVL +CA   + E G+QVH    + G+       S L+ MY+KCG+V +
Sbjct: 462 MGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRD 521

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           + KVF  +  PD++SWT++I+GYAQ+GM   ALE F  +      P+   F+ +L AC+H
Sbjct: 522 AIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSH 581

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            GLVD+GL+YFH ++E++GL    +HYAC+VD+L R GR  EA   I KMP++PD+ +W+
Sbjct: 582 GGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWS 641

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LLG CR+HGN+ LAK AA+ +    P++ A  V ++N Y  A
Sbjct: 642 TLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREA 684



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 209/452 (46%), Gaps = 44/452 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     S+ IQ C    ++  G+ VH+ + + GF    F++  LL MYAK G I D+  +
Sbjct: 162 PDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKV 221

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ ++ R+  S+N MISGF   G   +A N F                            
Sbjct: 222 FNSLENRNQVSWNAMISGFVSNGLYAEAYNSF---------------------------- 253

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
              RM+   E    N     SV  A+  +  +  G+ I+      G  S+  V +AL DM
Sbjct: 254 --LRMLG--EEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDM 309

Query: 204 YGKCGSINEARQIFDKMVDRDVVS--WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           + KCG + E+  +F        V+  W AMI  +   G  EE   LF  + ++ I+ + +
Sbjct: 310 FAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVY 369

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T+   LN+ AD  + E  KQ+HG + + G    S   +AL+  Y+KCG ++  +K+F+  
Sbjct: 370 TYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSL-CNALMDAYAKCGELDAMRKLFDTW 428

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              + +SWT+L+  Y+Q+   + AL  F  + + G QP+ + F GVL +C     ++ G 
Sbjct: 429 EESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYG- 487

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           Q  HS+  K G        + ++D+ A+ G   +A  V   +   PD   W +++ G   
Sbjct: 488 QQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLK-DPDVISWTAMISGYAQ 546

Query: 442 HGNLDLAKRAAEALFEIE----PENPATYVTM 469
           HG   +AK A E   ++E      N AT++ +
Sbjct: 547 HG---MAKDALELFRKMELVLPNPNSATFLCL 575



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 136/275 (49%), Gaps = 4/275 (1%)

Query: 173 QCLRLGKEIHGYIMRTGF--DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
           +CL+  K IHG++++      S  V+ + L   Y KC     ARQ+FD++  + V SWT 
Sbjct: 75  RCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTV 134

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           ++    + G   +G   F E++   I P+ +  +  + AC    +  +G+ VH  +   G
Sbjct: 135 LMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRG 194

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           +   +F  ++L+ MY+K G + +S KVFN +   + VSW ++I+G+  NG+  +A   F 
Sbjct: 195 FSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFL 254

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +L    +P+   F+ V  A    G V+KG +Y + I  + G+         ++D+ A+ 
Sbjct: 255 RMLGEEIRPNVACFISVSKAIGQLGDVEKG-RYINRIAFEIGMQSNIHVGTALIDMFAKC 313

Query: 411 GRFHEAEDV-ISKMPMKPDKFLWASLLGGCRIHGN 444
           G   E+  V +S          W +++ G  I G+
Sbjct: 314 GCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGH 348



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 147/308 (47%), Gaps = 18/308 (5%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N ++  ++K      AR +FDE+PQ+  FSWT ++ G        + +D +  +   +  
Sbjct: 102 NQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCD-I 160

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V +++ LS+ + A   +  + +G+ +H  ++  GF S   V ++L  MY K G I ++ +
Sbjct: 161 VPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCK 220

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+ + +R+ VSW AMI  +   G   E +  F  ++   IRPN   F  V  A      
Sbjct: 221 VFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGD 280

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF------NGMPRPDLVSW 329
            E G+ ++     IG        +AL+ M++KCG V  S  VF       G+  P    W
Sbjct: 281 VEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLP----W 336

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            ++I+G+  +G  ++A+  F  + ++  + D   +   L +        + L+Y   +K+
Sbjct: 337 NAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADM----RSLEY---VKQ 389

Query: 390 KHGLTYTA 397
            HG+ + +
Sbjct: 390 LHGMIWKS 397


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/401 (39%), Positives = 242/401 (60%), Gaps = 9/401 (2%)

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G I +A  LFD M E+DV +   MI G+ + G L +AR LFDEMP+R+  SWT MI+GYV
Sbjct: 236 GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +  Q   A  L+ +M        N+ + +++L   +    L    E+   +         
Sbjct: 296 QNQQVDIARKLFEVMPE-----KNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSV---- 346

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           V  +A+   +G+ G + +ARQ+FD+M ++D  +W+AMI  Y ++G   +   LF  + + 
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE 406

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GIRPN  +   VL+ CA  A  + G+++H  + R  +D   + AS L+ MY KCGN+  +
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           K+VF+     D+V W S+I GYAQ+G+  +AL  F  +  SG  PD + FVGVL+AC++ 
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G V KGL+ F+S++ K+ +    +HYAC+VDLL R+G+ +EA D+I KMPM+ D  +W +
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LLG CR H  LDLA+ AA+ L  +EP+N   ++ ++NIYAS
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYAS 627



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 37/211 (17%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           PS+ S ++  C     L+ G+++H+ L  S F   V++++ LL MY KCGN++ A+ +FD
Sbjct: 413 PSLIS-VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFD 471

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
               +DV  +N++I+G+ + G   +A  +F +M                           
Sbjct: 472 RFAVKDVVMWNSIITGYAQHGLGVEALRVFHDM--------------------------- 504

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALSDM 203
                +F   + +  T   VLSA S    ++ G EI    M T +  ++ +  ++ + D+
Sbjct: 505 -----HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNS-METKYQVEQKIEHYACMVDL 558

Query: 204 YGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            G+ G +NEA  + +KM ++ D + W A++G
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLG 589


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 262/464 (56%), Gaps = 35/464 (7%)

Query: 13  EALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +AL + +Q+     +P+   +SS++        +  G+++HS +   GF   +F+   L+
Sbjct: 228 QALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALV 287

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKC +                               +  A  +FD+MP+R+  SW +
Sbjct: 288 DMYAKCAD-------------------------------MHSAVRVFDQMPERNLVSWNS 316

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI G+   N    A+ +++ +   +  + N+ ++SSVLSA + +  L  G+++HG +++ 
Sbjct: 317 MIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKY 376

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G      V ++L DMY KC   +E  ++F  + DRDVV+W  ++  + Q  + EE    F
Sbjct: 377 GLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYF 436

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             + + GI P+  +F+ VL++ A  AA   G  +H  + ++GY        +L+ MY+KC
Sbjct: 437 WVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKC 496

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G++ ++ +VF G+   +++SWT++I+ Y  +G  ++ +E FE +L  G +P H+ FV VL
Sbjct: 497 GSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVL 556

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+H G V++GL +F+S+K+ H +    +HYAC+VDLL R+G   EA+  I  MPMKP 
Sbjct: 557 SACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPT 616

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
             +W +LLG CR +GNL + + AAE LFE+EP NP  YV +AN+
Sbjct: 617 PSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANM 660



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 212/439 (48%), Gaps = 36/439 (8%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L+    Q R+L+   ++H+ +  + +    F+ N L+++YAKCG ++ A  LF       
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHH- 206

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
              + T++                         +WT++I+    +N  ++AL L+  M+ 
Sbjct: 207 ---FKTIV-------------------------TWTSLITHLSHFNMHLQALSLFNQMR- 237

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                 N+FT SS+LSA +A   +  G+++H  I + GFD++  V +AL DMY KC  ++
Sbjct: 238 CSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMH 297

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNAC 270
            A ++FD+M +R++VSW +MI  +F     +    +F ++++   + PN  + + VL+AC
Sbjct: 298 SAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSAC 357

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A+      G+QVHG + + G  P ++  ++L+ MY KC   +   K+F  +   D+V+W 
Sbjct: 358 ANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWN 417

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            L+ G+ QN   ++A  YF ++ + G  PD   F  VL +      + +G    H    K
Sbjct: 418 VLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTA-IHDQIIK 476

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
            G          ++ + A+ G   +A  V   +    +   W +++   ++HG  +    
Sbjct: 477 LGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQLHGCANQVIE 535

Query: 451 AAEALFE--IEPENPATYV 467
             E +    IEP +  T+V
Sbjct: 536 LFEHMLSEGIEPSH-VTFV 553



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 4/236 (1%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L+ +L+     + L+   +IH  I+   + S   +++ L ++Y KCG +N+A  +F    
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204

Query: 222 D--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
              + +V+WT++I          +  +LF+++  SG  PN FTF+ +L+A A       G
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +Q+H  + + G+D   F  +ALV MY+KC ++ ++ +VF+ MP  +LVSW S+I G+  N
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHN 324

Query: 340 GMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            + D+A+  F+ +L+  T  P+ +    VL+AC + G ++ G Q  H +  K+GL 
Sbjct: 325 NLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQ-VHGVVVKYGLV 379


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 253/453 (55%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++S +    +  +L+  K++H ++        VF+ + L+D+Y KC         
Sbjct: 258 PDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKC--------- 308

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                 RDV                E A+ +  +    D    T MISGYV   +  EAL
Sbjct: 309 ------RDV----------------EMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEAL 346

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           + +R +   E       T SS+  A + +  L LGKE+HG I++T  D    V SA+ DM
Sbjct: 347 EAFRWLVQ-ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDM 405

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG ++ A ++F+++ ++D + W +MI    Q GR  E   LF ++   G R +  + 
Sbjct: 406 YAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSI 465

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +G L+ACA+  A   GK++HG M +       +A S+L+ MY+KCGN+  S++VF+ M  
Sbjct: 466 SGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQE 525

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + VSW S+I+ Y  +G   + L  F  +L++G QPDH+ F+G+++AC HAG VD+G++Y
Sbjct: 526 RNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRY 585

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +H + E++G+    +HYAC+ D+  R+GR  EA + I+ MP  PD  +W +LLG C IHG
Sbjct: 586 YHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHG 645

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++LA+ A++ LF+++P N   YV +AN+ A A
Sbjct: 646 NVELAEVASKHLFDLDPLNSGYYVLLANVQAGA 678



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 212/441 (48%), Gaps = 46/441 (10%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +K  L++ H    P+   ++ ++  C     L+ G ++H    S G +    ++N LL M
Sbjct: 144 IKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAM 203

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y+KC  +  A+ LFD   + D+ S+N +ISG+ + G + +A +LF             MI
Sbjct: 204 YSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLF-----------RGMI 252

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           S  ++                      +  T +S L  V+ +  L+  KEIHGYI+R   
Sbjct: 253 SAGIK---------------------PDSITFASFLPCVNELLSLKHCKEIHGYIIRHAV 291

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             D  + SAL D+Y KC  +  A++I  +    D V  T MI  Y   G+ +E    F  
Sbjct: 292 VLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRW 351

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           L++  ++P + TF+ +  A A  AA  LGK++HG + +   D      SA++ MY+KCG 
Sbjct: 352 LVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           ++ + +VFN +   D + W S+I   +QNG P +A+  F  +   GT+ D +   G L+A
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYA--CIVDLLARSGRFHEAEDVISKMP 424
           C +       L   H  KE HGL       +D YA   ++D+ A+ G  + +  V  +M 
Sbjct: 472 CAN-------LPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ 524

Query: 425 MKPDKFLWASLLGGCRIHGNL 445
            + ++  W S++     HG+L
Sbjct: 525 ER-NEVSWNSIISAYGNHGDL 544



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 205/429 (47%), Gaps = 34/429 (7%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L++L     P    +  +++ C   ++++ GK VH  +   G K  VF+ + L+ +YA+ 
Sbjct: 47  LKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAEN 106

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G++SD                               A+ LFD +PQ+D+  W  M++GYV
Sbjct: 107 GHLSD-------------------------------AQYLFDNIPQKDSVLWNVMLNGYV 135

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +      A+ ++  M++ E    N  T + VLS  ++   L LG ++HG  +  G + D 
Sbjct: 136 KNGDSGNAIKIFLEMRHSEIK-PNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDS 194

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V + L  MY KC  +  AR++FD     D+VSW  +I  Y Q G   E   LF  +I +
Sbjct: 195 PVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISA 254

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI+P++ TFA  L    +  + +  K++HGY+ R       F  SAL+ +Y KC +VE +
Sbjct: 255 GIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMA 314

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +K+       D V  T++I+GY  NG   +ALE F  L++   +P  + F  +  A    
Sbjct: 315 QKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGL 374

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             ++ G +   SI  K  L       + I+D+ A+ GR   A  V +++  K D   W S
Sbjct: 375 AALNLGKELHGSII-KTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEK-DAICWNS 432

Query: 435 LLGGCRIHG 443
           ++  C  +G
Sbjct: 433 MITSCSQNG 441



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + + GSL+ A+NLF  +      +W  MI G+    Q   AL  Y  M     S  +K+T
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVS-PDKYT 60

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
              V+ A   ++ +++GK +H  +   G   D  V S+L  +Y + G +++A+ +FD + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            +D V W  M+  Y + G       +F E+  S I+PN+ TFA VL+ CA  A  +LG Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +HG     G +  S  A+ L+ MYSKC  ++ ++K+F+  P+ DLVSW  +I+GY QNG+
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             +A   F  ++ +G +PD I F   L  C +  L  K  +  H    +H +       +
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFL-PCVNELLSLKHCKEIHGYIIRHAVVLDVFLKS 299

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL-FEIEP 460
            ++D+  +      A+ ++ +     D  +  +++ G  ++G     K A EA  + ++ 
Sbjct: 300 ALIDIYFKCRDVEMAQKILCQ-SSSFDTVVCTTMISGYVLNGK---NKEALEAFRWLVQE 355

Query: 461 ENPATYVTMANIYAS 475
               T VT ++I+ +
Sbjct: 356 RMKPTSVTFSSIFPA 370



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 165/329 (50%), Gaps = 38/329 (11%)

Query: 12  KEALQ----ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL+    ++ +   P+   +SS+        AL  GK++H  +  +       + + +
Sbjct: 343 KEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAI 402

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           LDMYAKCG +  A  +F+ + E+D   +N+MI+  ++ G                     
Sbjct: 403 LDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG--------------------- 441

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                     +P EA++L+R M   E +  +  ++S  LSA + +  L  GKEIHG +++
Sbjct: 442 ----------RPGEAINLFRQM-GMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
               SD    S+L DMY KCG++N +R++FD+M +R+ VSW ++I  Y   G  +E  AL
Sbjct: 491 GPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLAL 550

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV-HMYS 306
           F E++++GI+P+  TF G+++AC      + G + +  MT     P      A V  M+ 
Sbjct: 551 FHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFG 610

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
           + G ++ + +  N MP  PD   W +L+ 
Sbjct: 611 RAGRLDEAFETINSMPFPPDAGVWGTLLG 639



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 115/236 (48%), Gaps = 2/236 (0%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY + GS+ +A+ +F  +      +W  MI  +   G+       + +++ +G+ P+ +T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  V+ AC    + ++GK VH  +  +G     F  S+L+ +Y++ G++ +++ +F+ +P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           + D V W  ++ GY +NG    A++ F  +  S  +P+ + F  VL+ C    ++D G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             H I    GL   +     ++ + ++      A  +    P + D   W  ++ G
Sbjct: 181 -LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP-QSDLVSWNGIISG 234


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 245/442 (55%), Gaps = 33/442 (7%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C     L   +  HS +           ++ L+ MY++CG ++ A+ +FDE+  RD+ S+
Sbjct: 126 CANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSW 185

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+MI+G+ K G   +A  +F EM +RD F             +P                
Sbjct: 186 NSMIAGYAKAGCAREAVEVFGEMGRRDGF-------------EP---------------- 216

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             ++ +L SVL A   +  L LG+ + G+++  G   +  + SAL  MY KCG +  AR+
Sbjct: 217 --DEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARR 274

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           IFD M  RDV++W A+I  Y Q G  +E  +LF  + +  +  N  T   VL+ACA   A
Sbjct: 275 IFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGA 334

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            +LGKQ+  Y ++ G+    F A+AL+ MY+KCG++ ++++VF  MP+ +  SW ++I+ 
Sbjct: 335 LDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISA 394

Query: 336 YAQNGMPDKALEYFELLLK--SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            A +G   +AL  F+ +     G +P+ I FVG+L+AC HAGLV++G + F  +    GL
Sbjct: 395 LASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGL 454

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
               +HY+C+VDLLAR+G  +EA D+I KMP KPDK    +LLG CR   N+D+ +R   
Sbjct: 455 VPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIR 514

Query: 454 ALFEIEPENPATYVTMANIYAS 475
            + E++P N   Y+  + IYA+
Sbjct: 515 MILEVDPSNSGNYIISSKIYAN 536



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 41/333 (12%)

Query: 12  KEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +EA+++  ++       P      S++  C +   LE G+ V   +   G     +I + 
Sbjct: 199 REAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSA 258

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MYAKCG++  A+ +FD M  RDV ++N +ISG+ + G  ++A +LF  M +      
Sbjct: 259 LISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKE------ 312

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                     +    NK TL++VLSA + I  L LGK+I  Y  
Sbjct: 313 --------------------------DCVTENKITLTAVLSACATIGALDLGKQIDEYAS 346

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + GF  D  V +AL DMY KCGS+  A+++F +M  ++  SW AMI      G+ +E  +
Sbjct: 347 QRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALS 406

Query: 247 LFSELIK--SGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVH 303
           LF  +     G RPN  TF G+L+AC        G ++   M T  G  P     S +V 
Sbjct: 407 LFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVD 466

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           + ++ G++  +  +   MP +PD V+  +L+  
Sbjct: 467 LLARAGHLYEAWDLIEKMPEKPDKVTLGALLGA 499



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA+ A     +  H  + ++          +L+ MYS+CG V  ++KVF+ +PR DLVS
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVS 184

Query: 329 WTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           W S+IAGYA+ G   +A+E F E+  + G +PD +  V VL AC   G ++ G ++    
Sbjct: 185 WNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELG-RWVEGF 243

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             + G+T  +   + ++ + A+ G    A  +   M  + D   W +++ G   +G  D 
Sbjct: 244 VVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAAR-DVITWNAVISGYAQNGMAD- 301

Query: 448 AKRAAEALFEIEPENPAT 465
               A +LF    E+  T
Sbjct: 302 ---EAISLFHAMKEDCVT 316


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 258/453 (56%), Gaps = 33/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHS-HLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+    S++++ C+  +AL  GK VH   +K       +++ N L+DMYA C +      
Sbjct: 105 PNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCD------ 158

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                   S++ AR +F+++  ++  SWT +I+GY         
Sbjct: 159 ------------------------SMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGG 194

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L ++R M   E  +S  F+ S  +SA ++I    LGK++H  ++  GF+S+  V +A+ D
Sbjct: 195 LRVFRQMFMEEGELS-PFSFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILD 253

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY +C   +EA+Q+F +M  +D ++W  +I   F+     E   +FS+++  G  PN FT
Sbjct: 254 MYCRCRCASEAKQLFGEMTQKDTITWNTLIAG-FETLDSYESLCIFSQMVSEGFSPNCFT 312

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  V+ ACA+ A    G+Q+HG +   G D     ++AL+ MY+KCGNV +S K+F+GM 
Sbjct: 313 FTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMR 372

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +LVSWTS++ GY  +G   +A++ F  ++ SG +PD IVF+ VL+AC+HAGLVD+GL+
Sbjct: 373 HTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLR 432

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF  +   + +    D YAC+VDLL+R+GR  EA ++I  MP KPD+ +W +LLG C+ +
Sbjct: 433 YFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKY 492

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
               + K AA  + E++P    TYV ++N  A+
Sbjct: 493 KQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAA 525



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 177/349 (50%), Gaps = 6/349 (1%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I  +   GS E+A  LFDEMP RD  +WT+MI+GY   N    A +++  M   +    
Sbjct: 47  LIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLR-DGVKP 105

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGK-CGSINEARQ 215
           N FT+S+VL A  +++ L  GK +HG  ++ G     + V +AL DMY   C S++ AR 
Sbjct: 106 NAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARL 165

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+ +  ++ VSWT +I  Y        G  +F ++       + F+F+  ++ACA   +
Sbjct: 166 VFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGS 225

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LGKQVH  +   G++      +A++ MY +C     +K++F  M + D ++W +LIAG
Sbjct: 226 SNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAG 285

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           + +     ++L  F  ++  G  P+   F  V+ AC +  ++  G Q    I  + GL  
Sbjct: 286 F-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHR-GLDN 343

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             +    ++D+ A+ G   ++  + S M    +   W S++ G   HG+
Sbjct: 344 NLELSNALIDMYAKCGNVADSHKIFSGM-RHTNLVSWTSMMIGYGAHGH 391


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 177/507 (34%), Positives = 273/507 (53%), Gaps = 45/507 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L+ A +I + +  PS  +Y+ +++   +   L +   +   L+  G  P  F    +L  
Sbjct: 147 LRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKA 206

Query: 71  YAKCGNISDAQT----LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
                ++   +     +     + D   YN++I  + +  ++E A+ LFDEM  RD+ SW
Sbjct: 207 IGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSW 266

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             MISGYVR  +  +A++ +R MQ   N   ++ T+ S LSA +A++ L LG EIH Y+ 
Sbjct: 267 NVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVR 326

Query: 187 RT-GFDSDEVVWSALSDMYGKCGSIN-------------------------------EAR 214
           +  GF +   + +AL DMY KCG +N                               EAR
Sbjct: 327 KELGFTTR--IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREAR 384

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            +FDK   RDVV WTAMI  Y Q    ++  ALF E+    I+P+ FT   +L  CA   
Sbjct: 385 DLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLG 444

Query: 275 AEELGKQVHGYM--TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
           A E GK +HGY+   RI  D      +AL+ MYSKCG V+ S ++F  +   D  SWTS+
Sbjct: 445 ALEQGKWIHGYLDENRITMD--VVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSI 502

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I G A NG   +AL  F  + + G +PD I F+GVL+AC+H GLV++G ++F+S+K+ H 
Sbjct: 503 ICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHR 562

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF---LWASLLGGCRIHGNLDLAK 449
           +    +HY C++DLL R+G   EAE++I ++P++  +    L+ +LL  CRIH N+D+ +
Sbjct: 563 IEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 622

Query: 450 RAAEALFEIEPENPATYVTMANIYASA 476
           R A+ L  IE  + + +  +ANIYAS 
Sbjct: 623 RLAKKLENIESCDSSIHTLLANIYASV 649



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 155/318 (48%), Gaps = 23/318 (7%)

Query: 170 SAIQCLRLGK------EIHGYIMRTGFDSDEVVWSALSDMYGKC-----GSINEARQIFD 218
           S I+CLR  K      +I   I R G + D      ++ +   C     G++  A +IF+
Sbjct: 99  SCIECLRNCKSMDQLKQIQSQIFRIGLEGDR---DTINKLMAFCADSSLGNLRYAEKIFN 155

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            + D  +  +  M+  Y + G   +   LF +L + G+ P+ FT+  VL A         
Sbjct: 156 YVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQ 215

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G++V G++ + G D  ++  ++L+ MY +  NVEN+KK+F+ M   D VSW  +I+GY +
Sbjct: 216 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 275

Query: 339 NGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
               + A+  F  + + G + PD    V  L+ACT    ++ G +  + ++++ G T   
Sbjct: 276 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRI 335

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           D+   ++D+ A+ G  + A ++  +M MK +   W S++ G    G+L    R A  LF+
Sbjct: 336 DN--ALLDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDL----REARDLFD 388

Query: 458 IEP-ENPATYVTMANIYA 474
             P  +   +  M N Y 
Sbjct: 389 KSPVRDVVLWTAMINGYV 406


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 265/500 (53%), Gaps = 70/500 (14%)

Query: 14  ALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           AL+I  ++     P+ + Y ++I        L EG+K+H+ + ++GF   + ++  L++M
Sbjct: 192 ALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINM 251

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y KCG                               S  +AR +FD+M +RD  SW  MI
Sbjct: 252 YGKCG-------------------------------SSHEAREVFDKMKKRDMVSWNVMI 280

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
             YV+     EAL+LY+ + + E     K T  S+L A S+++ L  G+ +H +I+  G 
Sbjct: 281 GCYVQNGDFHEALELYQKL-DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG----------------- 233
           DS+  V +AL +MY KCGS+ EAR++F+ M +RD V+W+ +IG                 
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399

Query: 234 -----------------RYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAA 275
                             Y Q G       +F E+   +G++P+A TF  VL ACA    
Sbjct: 400 FDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
               K +H  ++    +      + L++MY++CG++E ++++F       +VSWT+++A 
Sbjct: 460 LSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAA 519

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           ++Q G   +AL+ F+ +   G +PD + +  +L  CTH G +++G +YF  + E HGL  
Sbjct: 520 FSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAP 579

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           TADH+A +VDLL RSGR  +A++++  MP +PD   W + L  CRIHG L+L + AAE +
Sbjct: 580 TADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERV 639

Query: 456 FEIEPENPATYVTMANIYAS 475
           +E++P + A Y+ M+NIYA+
Sbjct: 640 YELDPSSTAPYIAMSNIYAA 659



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 157/581 (27%), Positives = 256/581 (44%), Gaps = 145/581 (24%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    + +++  C     + EG+ +H  ++ S F+    + N L+ MY KC ++ DA++
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 83  LFDEM--QERDVCSYNTMISGFTKGG--------------------------------SL 108
           +F+ M  ++R+V S+N MI+ + + G                                SL
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 109 EQARNLFDEM--PQRDNFS--WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS- 163
            Q R + + +     D+F     A+++ Y R+    +A  +++ +Q  + +  N   L+ 
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 164 ----------------------------SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                                       +V+S  S  + L  G++IH  I+  GFDSD V
Sbjct: 184 SQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLV 243

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +AL +MYGKCGS +EAR++FDKM  RD+VSW  MIG Y Q G   E   L+ +L   G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEG 303

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
            +    TF  +L AC+   A   G+ VH ++   G D     A+ALV+MY+KCG++E ++
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEAR 363

Query: 316 KVFNGMPRPDLVSWTSLIAGYA----------------------------------QNGM 341
           KVFN M   D V+W++LI  YA                                  QNG 
Sbjct: 364 KVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGC 423

Query: 342 PDKALEYF-ELLLKSGTQPDHIVFVGVLTACT-----------HA--------------- 374
              A++ F E+   +G +PD + F+ VL AC            HA               
Sbjct: 424 AVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTN 483

Query: 375 ---------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
                    G +++  + F + KEK  +++TA     +V   ++ GR+ EA D+  +M +
Sbjct: 484 TLINMYARCGSLEEAERLFAAAKEKTVVSWTA-----MVAAFSQYGRYAEALDLFQEMDL 538

Query: 426 ---KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
              KPD   + S+L  C   G+L+   R    + E+    P
Sbjct: 539 EGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAP 579



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 210/408 (51%), Gaps = 13/408 (3%)

Query: 72  AKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFS 125
           + CG++++ + L + ++    ERD    N +IS + K  SL  AR++F+ M   QR+  S
Sbjct: 18  SSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVS 77

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI+ Y +     EAL LY  M N +   ++  T  SVL A S+   L  G+EIH  +
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRM-NLQGLGTDHVTFVSVLGACSS---LAQGREIHNRV 133

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
             +G DS + + +AL  MY + GS+ +A+++F  +  RD  SW A+I  + Q G      
Sbjct: 134 FYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGAL 193

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F E+ K  ++PN+ T+  V++  +       G+++H  +   G+D     A+AL++MY
Sbjct: 194 RIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMY 252

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCG+   +++VF+ M + D+VSW  +I  Y QNG   +ALE ++ L   G +     FV
Sbjct: 253 GKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFV 312

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +L AC+    + +G +  HS   + GL         +V++ A+ G   EA  V + M  
Sbjct: 313 SILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKN 371

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           + D   W++L+G    +G    A++A +    +   +   +  M   Y
Sbjct: 372 R-DAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY 418



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 25/230 (10%)

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  TF  VL +C+       G+ +H  +    ++  +   +AL+ MY KC ++ +++ 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 317 VFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT-- 372
           VF  M   + ++VSW ++IA YAQNG   +AL  +  +   G   DH+ FV VL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 373 ------HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
                 H  +   GL  F S+               +V + AR G   +A+ +   +  +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLAN------------ALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRA-AEALFEIEPENPATYVTMANIYAS 475
            D+  W +++      G+   A R   E   +++P N  TY+ + + +++
Sbjct: 172 -DETSWNAVILAHSQSGDWSGALRIFKEMKCDMKP-NSTTYINVISGFST 219


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/447 (37%), Positives = 252/447 (56%), Gaps = 33/447 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S+   C  +R +  G+ VH     + F       N LLDMY+KC                
Sbjct: 301 SVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKC---------------- 344

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A+ +F EM  R   S+T+MI+GY R     EA+ L+  M+
Sbjct: 345 ---------------GDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    + +T+++VL+  +  + L  GK +H +I       D  V +AL DMY KCGS+
Sbjct: 390 E-EGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSM 448

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNA 269
            EA  +F +M  +D++SW  +IG Y +     E  +LF+ L ++    P+  T A VL A
Sbjct: 449 REAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPA 508

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA  +A + G+++HGY+ R GY      A++LV MY+KCG +  ++ +F+ +   DLVSW
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSW 568

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T +IAGY  +G   +A+  F  + ++G +PD I FV +L AC+H+GLVD+G ++F+ ++ 
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRH 628

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +  +  T +HYACIVD+LAR+G   +A   I  MP+ PD  +W +LL GCRIH ++ LA+
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688

Query: 450 RAAEALFEIEPENPATYVTMANIYASA 476
           R AE +FE+EPEN   YV MANIYA A
Sbjct: 689 RVAEKVFELEPENTGYYVLMANIYAEA 715



 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 225/436 (51%), Gaps = 36/436 (8%)

Query: 5   LCNQRRLKEALQILHQISH--PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    LK A+++LH        P    S++Q C  +++L++GK+V + ++ +GF     
Sbjct: 71  FCESGNLKNAVKLLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSN 130

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + + L  MY  CG++ +A  +FD+++      +N +++   K G    +  LF +M    
Sbjct: 131 LGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKM---- 186

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                 M SG       +E                + +T S V  + S+++ +  G+++H
Sbjct: 187 ------MSSG-------VEM---------------DSYTFSCVSKSFSSLRSVNGGEQLH 218

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           GYI+++GF     V ++L   Y K   ++ AR++FD+M +RDV+SW ++I  Y   G  E
Sbjct: 219 GYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 278

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +G ++F +++ SGI  +  T   V   CAD     LG+ VH +  +  +       + L+
Sbjct: 279 KGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLL 338

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MYSKCG+++++K VF  M    +VS+TS+IAGYA+ G+  +A++ FE + + G  PD  
Sbjct: 339 DMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               VL  C    L+D+G +    IKE + + +       ++D+ A+ G   EAE V S+
Sbjct: 399 TVTAVLNCCARNRLLDEGKRVHEWIKE-NDMGFDIFVSNALMDMYAKCGSMREAELVFSE 457

Query: 423 MPMKPDKFLWASLLGG 438
           M +K D   W +++GG
Sbjct: 458 MRVK-DIISWNTVIGG 472



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 213/409 (52%), Gaps = 43/409 (10%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           R++  G+++H ++  SGF     + N L+  Y K   +  A+ +FDEM ERDV S+N++I
Sbjct: 209 RSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSII 268

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
           +G+   G  E+  ++F +M          + SG       IE +DL              
Sbjct: 269 NGYVSNGLAEKGLSVFVQM----------LFSG-------IE-IDLA------------- 297

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T+ SV +  +  + + LG+ +H + ++  F  ++   + L DMY KCG ++ A+ +F +
Sbjct: 298 -TIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFRE 356

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M  R VVS+T+MI  Y +EG   E   LF E+ + GI P+ +T   VLN CA +   + G
Sbjct: 357 MSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG 416

Query: 280 KQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           K+VH ++    +G+D   F ++AL+ MY+KCG++  ++ VF+ M   D++SW ++I GY+
Sbjct: 417 KRVHEWIKENDMGFDI--FVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYS 474

Query: 338 QNGMPDKALEYFELLL-KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           +N   ++AL  F LLL +    PD      VL AC      DKG +  H    ++G  Y 
Sbjct: 475 KNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNG--YF 531

Query: 397 ADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +D +    +VD+ A+ G    A  +   +  K D   W  ++ G  +HG
Sbjct: 532 SDRHVANSLVDMYAKCGALLLARLLFDDITSK-DLVSWTVMIAGYGMHG 579



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 170/329 (51%), Gaps = 37/329 (11%)

Query: 13  EALQILHQISHP--SPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA+++  ++     SP +Y+  +++  C +NR L+EGK+VH  +K +     +F+SN L+
Sbjct: 380 EAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALM 439

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKCG                               S+ +A  +F EM  +D  SW  
Sbjct: 440 DMYAKCG-------------------------------SMREAELVFSEMRVKDIISWNT 468

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I GY +     EAL L+ ++   +    ++ T++ VL A +++     G+EIHGYIMR 
Sbjct: 469 VIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN 528

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G+ SD  V ++L DMY KCG++  AR +FD +  +D+VSWT MI  Y   G  +E  ALF
Sbjct: 529 GYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALF 588

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSK 307
           +++ ++GI P+  +F  +L AC+     + G +    M      +P     + +V M ++
Sbjct: 589 NQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648

Query: 308 CGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            GN+  + +    MP  PD   W +L+ G
Sbjct: 649 TGNLSKAYRFIENMPIPPDATIWGALLCG 677



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 152/312 (48%), Gaps = 7/312 (2%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TL SVL   +  + L+ GKE+  +I   GF  D  + S L+ MY  CG + EA ++FD++
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
                + W  ++    + G       LF +++ SG+  +++TF+ V  + +   +   G+
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+HGY+ + G+   +   ++LV  Y K   V++++KVF+ M   D++SW S+I GY  NG
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNG 275

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
           + +K L  F  +L SG + D    V V   C  + L+  G +  H    K   +      
Sbjct: 276 LAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG-RAVHCFGVKACFSREDRFC 334

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
             ++D+ ++ G    A+ V  +M  +     + S++ G    G   LA  A +   E+E 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRS-VVSYTSMIAGYAREG---LAGEAVKLFEEMEE 390

Query: 461 E--NPATYVTMA 470
           E  +P  Y   A
Sbjct: 391 EGISPDVYTVTA 402


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/389 (41%), Positives = 238/389 (61%), Gaps = 3/389 (0%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRM 148
           DV   N +IS F+  G++E AR +FD +P   RD  SW +MISGY++ ++   AL ++  
Sbjct: 161 DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWE 220

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           +    +   ++ TL S LS    +  L LGK+IHG    +GF  D  V S+L DMY KCG
Sbjct: 221 LLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCG 280

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I +AR++FD++  R+ V WT+MI  Y Q    +E   LF E+   G   +A T A VL+
Sbjct: 281 QIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLS 340

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC    A   G+ +H Y  R   +    A +AL+ MYSKCG+++ + ++F+G+ +PD+ S
Sbjct: 341 ACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFS 400

Query: 329 WTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           W+++I+G A NG  DKAL  F ++ + S  +P+ I F+GVL AC H G VDKGL YF+++
Sbjct: 401 WSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAM 460

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            + + LT   +HY C+VDLL R+    EAE  I  +P++PD  +W SLL  CR HGN++L
Sbjct: 461 TQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIEL 520

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
           A+ AA+ + E+EP      V ++N+YASA
Sbjct: 521 AEFAAKQIEELEPRRCGARVLLSNVYASA 549



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 192/363 (52%), Gaps = 10/363 (2%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           +R LF ++ + + FSW  M   Y R + P E + LY +M     ++ + ++   VL A +
Sbjct: 80  SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLR-NGTLPDNYSFPFVLKACA 138

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM--VDRDVVSW 228
            +  L  G+EIH   ++ G   D  V +AL   +  CG++  AR +FD +  + RDVVSW
Sbjct: 139 RLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSW 198

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
            +MI  Y Q  R E    +F EL+  G + P+  T    L+ C      +LGK++HG  T
Sbjct: 199 NSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFT 258

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
             G+    F  S+L+ MYSKCG +E+++KVF+ +P  + V WTS+IAGYAQ+ +  +A+E
Sbjct: 259 GSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIE 318

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            F  +   G   D      VL+AC H G + +G ++ H   E++ +    +    ++ + 
Sbjct: 319 LFREMQIGGFAADAATIACVLSACGHWGALAQG-RWIHLYCERNSIEMDLNARNALIGMY 377

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR---AAEALFEIEPENPA 464
           ++ G   +A ++   +  +PD F W++++ G  ++G  D A       E + +I P N  
Sbjct: 378 SKCGDIQKALEIFHGL-TQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRP-NEI 435

Query: 465 TYV 467
           T++
Sbjct: 436 TFL 438



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 146/320 (45%), Gaps = 35/320 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P      S +  C +   L+ GKK+H     SGF   VF+ + L+DMY+KCG I DA+ +
Sbjct: 229 PDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKV 288

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD +  R+   + +MI+G+ +    ++A  LF EM           I G+          
Sbjct: 289 FDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM----------QIGGF---------- 328

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                        ++  T++ VLSA      L  G+ IH Y  R   + D    +AL  M
Sbjct: 329 ------------AADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGM 376

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFT 262
           Y KCG I +A +IF  +   D+ SW+A+I      G  ++   LFS++ + S IRPN  T
Sbjct: 377 YSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEIT 436

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F GVL AC      + G      MT+I    P       +V +  +   +  ++K    +
Sbjct: 437 FLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTL 496

Query: 322 P-RPDLVSWTSLIAGYAQNG 340
           P +PD+V W SL+     +G
Sbjct: 497 PIQPDVVIWRSLLFACRNHG 516



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
            KEA+++  ++         +  + ++  C    AL +G+ +H + + +  +  +   N 
Sbjct: 313 FKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNA 372

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           L+ MY+KCG+I  A  +F  + + D+ S++ +ISG    G  ++A +LF +M
Sbjct: 373 LIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQM 424


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 268/468 (57%), Gaps = 21/468 (4%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L EA ++   +   +   ++S+++   +N  + E +++  H+          +   LL  
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLL-- 159

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
             + G + DA+ LFD M E+DV +   MI G+ + G L++AR LFDEMP+R+  +WTAM+
Sbjct: 160 --QEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMV 217

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           SGY R  +   A  L+ +M        N+ + +++L   +    +R    +        F
Sbjct: 218 SGYARNGKVDVARKLFEVMPE-----RNEVSWTAMLLGYTHSGRMREASSL--------F 264

Query: 191 DS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           D+      VV + +   +G  G +++AR++F  M +RD  +W+AMI  Y ++G   E   
Sbjct: 265 DAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALG 324

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF  + + G+  N  +   VL+ C   A+ + GKQVH  + R  +D   + AS L+ MY 
Sbjct: 325 LFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYV 384

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCGN+  +K+VFN  P  D+V W S+I GY+Q+G+ ++AL  F  +  SG  PD + F+G
Sbjct: 385 KCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIG 444

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+++G V +GL+ F ++K K+ +    +HYAC+VDLL R+ + +EA  ++ KMPM+
Sbjct: 445 VLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPME 504

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           PD  +W +LLG CR H  LDLA+ A E L ++EP+N   YV ++N+YA
Sbjct: 505 PDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYA 552



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 183/404 (45%), Gaps = 48/404 (11%)

Query: 71  YAKCGNISDAQTLFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           YA+ G +  A+ +FDE  +  R V S+N M++ + +     +A  LF++MPQR+  SW  
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNG 91

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +ISG+++     EA  ++  M +  N VS    +   +      +  RL   +       
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPD-RNVVSWTSMVRGYVRNGDVAEAERLFWHMP------ 144

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
               + V W+ +     + G +++AR++FD M ++DVV+ T MIG Y +EGR +E  ALF
Sbjct: 145 --HKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALF 202

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR----------IGYD------ 292
            E+ K     N  T+  +++  A +   ++ +++   M            +GY       
Sbjct: 203 DEMPKR----NVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMR 258

Query: 293 ---------PYS--FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
                    P       + ++  +   G V+ +++VF GM   D  +W+++I  Y + G 
Sbjct: 259 EASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGY 318

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY- 400
             +AL  F  + + G   +    + VL+ C     +D G Q    +       +  D Y 
Sbjct: 319 ELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSE---FDQDLYV 375

Query: 401 -ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            + ++ +  + G    A+ V ++ P+K D  +W S++ G   HG
Sbjct: 376 ASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQHG 418



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 91/174 (52%), Gaps = 16/174 (9%)

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRP--DLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           ++S  +  Y++ G +++++KVF+  P P   + SW +++A Y +   P +AL  FE +  
Sbjct: 24  SSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM-- 81

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
              Q + + + G+++     G++ +  + F ++ +++ +++T+     +V    R+G   
Sbjct: 82  --PQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTS-----MVRGYVRNGDVA 134

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           EAE +   MP K +   W  +LGG    G +D A++    LF++ PE     VT
Sbjct: 135 EAERLFWHMPHK-NVVSWTVMLGGLLQEGRVDDARK----LFDMMPEKDVVAVT 183


>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
 gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
          Length = 963

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 262/491 (53%), Gaps = 45/491 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLDMYAKCGNISDAQTLFDE 86
           + S++ ++      L +GK+ H H+  +G     + +SN L++MYAKCG I  A  +F  
Sbjct: 380 LLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQL 439

Query: 87  MQERDVCSYNTMISGFTKGG-------------------------------------SLE 109
           M+  D  S+NT+IS   + G                                     ++ 
Sbjct: 440 MEATDRISWNTIISALDQNGLKLLSAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMS 499

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EALDLYRMMQNFENSVSNKFTLSSVLSA 168
               +F+ M   D  SW +M+        PI E ++++  M      + NK T  ++L+A
Sbjct: 500 DCWKVFNSMADHDEVSWNSMMGVMASSQAPISETVEVFNNMMR-GGLIPNKVTFVNLLAA 558

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVS 227
           +S +  L LGK+ H  +++ G   D VV +AL   Y K G +N    +F  M  R D VS
Sbjct: 559 LSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSCEHLFSNMSGRRDAVS 618

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W +MI  Y   G  +E       ++ SG   +  TF+ +LNACA  AA E G ++H +  
Sbjct: 619 WNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNACASVAALERGMEMHAFGI 678

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           R   +      SALV MYSKCG V+ + K+FN M + +  SW S+I+GYA++G+  KALE
Sbjct: 679 RSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKALE 738

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            FE +L+S   PDH+ FV VL+AC+HAGLV++GL+YF  + + HG+    +HY+C++DLL
Sbjct: 739 TFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDLL 797

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN---LDLAKRAAEALFEIEPENPA 464
            R+G+  + ++ I +MPMKP+  +W ++L  CR   +   ++L + A   L EIEP+NP 
Sbjct: 798 GRAGKIDKIKEYIQRMPMKPNALIWRTVLVACRQSKDGSKIELGREALRVLLEIEPQNPV 857

Query: 465 TYVTMANIYAS 475
            YV  +N +A+
Sbjct: 858 NYVLASNFHAA 868



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 226/463 (48%), Gaps = 55/463 (11%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           SG    +++ + L+  +A+ G I +A+ +F  ++E++  + N +I G  K    E+A  +
Sbjct: 303 SGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAVKI 362

Query: 115 FDEMPQRDNF-----SWTAMISGYVRYNQPIEALD---------LYRMMQNFENSVSN-- 158
           F  +  R+       ++  ++S    Y+ P E L          L   + + + +VSN  
Sbjct: 363 F--VGTRNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNGL 420

Query: 159 ------------------------KFTLSSVLSAV--SAIQCLRLGKEIHGYIMRTGFDS 192
                                   + + ++++SA+  + ++ L  G+++H   ++ G D 
Sbjct: 421 VNMYAKCGAIDSASKIFQLMEATDRISWNTIISALDQNGLKLLSAGQQVHCDAVKWGLDL 480

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF-QEGRREEGFALFSEL 251
           D  V + L  MYG+CG++++  ++F+ M D D VSW +M+G     +    E   +F+ +
Sbjct: 481 DTSVSNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPISETVEVFNNM 540

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           ++ G+ PN  TF  +L A +  +  ELGKQ H  + + G    +   +AL+  Y+K G++
Sbjct: 541 MRGGLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDM 600

Query: 312 ENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
            + + +F+ M  R D VSW S+I+GY  NG   +A++   L+L SG   D   F  +L A
Sbjct: 601 NSCEHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNA 660

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C     +++G++  H+   +  L       + +VD+ ++ GR   A  + + M  + ++F
Sbjct: 661 CASVAALERGME-MHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQR-NEF 718

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEI----EPENPATYVTM 469
            W S++ G   HG   L ++A E   E+    E  +  T+V++
Sbjct: 719 SWNSMISGYARHG---LGRKALETFEEMLRSRESPDHVTFVSV 758



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 34/318 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + +L+        LE GK+ H+ +   G      + N L+  YAK G+++  + L
Sbjct: 547 PNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSCEHL 606

Query: 84  FDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           F  M   RD  S+N+MISG+   G L++A +            W  + SG          
Sbjct: 607 FSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCV----------WLMLHSG---------- 646

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                        + +  T S +L+A +++  L  G E+H + +R+  +SD VV SAL D
Sbjct: 647 ------------QIMDCCTFSIILNACASVAALERGMEMHAFGIRSHLESDVVVESALVD 694

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG ++ A ++F+ M  R+  SW +MI  Y + G   +    F E+++S   P+  T
Sbjct: 695 MYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKALETFEEMLRSRESPDHVT 754

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  VL+AC+     E G +    M   G  P     S ++ +  + G ++  K+    MP
Sbjct: 755 FVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMP 814

Query: 323 -RPDLVSWTSLIAGYAQN 339
            +P+ + W +++    Q+
Sbjct: 815 MKPNALIWRTVLVACRQS 832



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 177/375 (47%), Gaps = 31/375 (8%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR-MM 149
           D+   N +++ + KG  L  A  +FDEMPQR+  SWT ++SGYV      EA  ++R M+
Sbjct: 94  DLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQGITEEAFRVFRAML 153

Query: 150 QNFENSVS-NKFTLSSVLSAVSAIQCLRLG--KEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           +  E       FT  ++L A       RLG   ++HG + +T + S+  V +AL  MYG 
Sbjct: 154 REVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYASNTTVCNALISMYGS 213

Query: 207 C--GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG----IRPNA 260
           C  G    A+++FD    RD+++W A++  Y ++G     F LF ++ +      +RP  
Sbjct: 214 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTE 273

Query: 261 FTFAGVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            TF  ++ A +    +  +  QV   + + G     +  SALV  +++ G ++ +K +F 
Sbjct: 274 HTFGSLITATSLSSGSSAVLDQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFL 333

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV----FVGVLTACTHAG 375
            +   + V+   LI G  +    ++A++ F      GT+   +V    +V +L+A     
Sbjct: 334 SLKEKNAVTLNGLIVGLVKQHCSEEAVKIF-----VGTRNTIVVNADTYVVLLSAIAEYS 388

Query: 376 LVDKGLQYFHSIKEKHG---LTYTADHYACI----VDLLARSGRFHEAEDVISKMPMKPD 428
           + ++GL+     KE HG    T   D    +    V++ A+ G    A  +   M    D
Sbjct: 389 IPEEGLR---KGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLME-ATD 444

Query: 429 KFLWASLLGGCRIHG 443
           +  W +++     +G
Sbjct: 445 RISWNTIISALDQNG 459



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 47/263 (17%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           + +H  +++ G + D  + + L + Y K   +  A ++FD+M  R+ VSWT ++  Y  +
Sbjct: 80  ENLHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQ 139

Query: 239 GRREEGFALFSELIKS---GIRPNAFTFAGVLNACADHAAEELG--KQVHGYMTRIGYDP 293
           G  EE F +F  +++    G RP +FTF  +L AC D   + LG   QVHG +++  Y  
Sbjct: 140 GITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYAS 199

Query: 294 YSFAASALVHMYSKC--GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG----------- 340
            +   +AL+ MY  C  G    +++VF+G P  DL++W +L++ YA+ G           
Sbjct: 200 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMD 259

Query: 341 --MPDKALEY---------------------------FELLLKSGTQPDHIVFVGVLTAC 371
               D  ++                            F  +LKSG   D  V   +++A 
Sbjct: 260 MQREDSRIQLRPTEHTFGSLITATSLSSGSSAVLDQVFVSVLKSGCSSDLYVGSALVSAF 319

Query: 372 THAGLVDKGLQYFHSIKEKHGLT 394
              GL+D+    F S+KEK+ +T
Sbjct: 320 ARHGLIDEAKDIFLSLKEKNAVT 342



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 51/334 (15%)

Query: 24  PSPSIYSSLIQFCRQNRALEEG--KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           P+   + +L++ C+       G   +VH  L  + +     + N L+ MY  C       
Sbjct: 162 PTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYASNTTVCNALISMYGSC------- 214

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                T G  +  A+ +FD  P RD  +W A++S Y +    + 
Sbjct: 215 ---------------------TVGPPI-LAQRVFDGTPIRDLITWNALMSVYAKKGDVVS 252

Query: 142 ALDLYRMMQN---------FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
              L+  MQ           E++  +  T +S+ S  SA+       ++   ++++G  S
Sbjct: 253 TFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSSGSSAVL-----DQVFVSVLKSGCSS 307

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D  V SAL   + + G I+EA+ IF  + +++ V+   +I    ++   EE   +F    
Sbjct: 308 DLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAVKIFVG-T 366

Query: 253 KSGIRPNAFTFAGVLNACADHAAEE----LGKQVHGYMTRIGYDPYSFAAS-ALVHMYSK 307
           ++ I  NA T+  +L+A A+++  E     GK+ HG+M R G      A S  LV+MY+K
Sbjct: 367 RNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAK 426

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           CG ++++ K+F  M   D +SW ++I+   QNG+
Sbjct: 427 CGAIDSASKIFQLMEATDRISWNTIISALDQNGL 460


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 265/468 (56%), Gaps = 36/468 (7%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L ++ +I  Q+      P+   Y S+++ C    AL  G+++H+H+  +GF+  V++ + 
Sbjct: 444 LSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSV 503

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAK G                                L  A  +   +P+ D  SW
Sbjct: 504 LIDMYAKYGQ-------------------------------LALALRILRRLPEDDVVSW 532

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMI+GYV+++   EAL L+  M+ +     +    +S +SA + I+ LR G++IH    
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEME-YRGIQFDNIGFASAISACAGIRALRQGQQIHAQSY 591

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             GF +D  + +AL  +Y +CG I EA   F+K+ D++ +SW +++    Q G  EE   
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQ 651

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F  ++++    N FT+   ++A A  A  + G+Q+H  + + GYD     +++L+ +Y+
Sbjct: 652 VFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYA 711

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K G++ ++ + FN M   +++SW ++I GY+Q+G   +AL  FE +   G  P+H+ FVG
Sbjct: 712 KSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVG 771

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLV +GL YF S+ + H L   ++HY C+VDLL R+G+   A + I +MP+ 
Sbjct: 772 VLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP 831

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            D  +W +LL  C IH N+++ +RAA  L E+EPE+ ATYV ++NIYA
Sbjct: 832 ADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 206/444 (46%), Gaps = 35/444 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P + SS++    + +  E G+++H  +   GF    ++ N L+ +Y            
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALY------------ 306

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                              ++   L  A  +F  M  RD  S+ ++ISG V+      AL
Sbjct: 307 -------------------SRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  MQ  +    +  T++S+LSA +++  L  G ++H + ++ G  +D ++  +L D+
Sbjct: 348 ELFTKMQR-DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +  A + F      ++V W  M+  Y Q     + F +F ++   G+ PN FT+
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C    A  LG+Q+H ++ + G+    +  S L+ MY+K G +  + ++   +P 
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPE 526

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWT++IAGY Q+ M  +AL+ FE +   G Q D+I F   ++AC     + +G Q 
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQ 585

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+     G          ++ L AR GR  EA     K+  K +   W SL+ G    G
Sbjct: 586 IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDK-NNISWNSLVSGLAQSG 644

Query: 444 NLDLAKRAAEALFEIEPE-NPATY 466
             + A +    +   E E N  TY
Sbjct: 645 YFEEALQVFVRMLRTEAEVNMFTY 668



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 204/440 (46%), Gaps = 44/440 (10%)

Query: 24  PSPSIYSSLIQFCRQ-NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+   ++ +++ C   + A    K+VHS     GF     ++N L+D+Y+K G I  A+ 
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+ +  +D+ ++  MISG ++ G  E+A  LF +M   + F                  
Sbjct: 217 VFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF------------------ 258

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                            + LSSVLSA + IQ   LG+++H  +++ GF S+  V + L  
Sbjct: 259 --------------PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVA 304

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y +   +  A +IF  M  RD VS+ ++I    Q+G  +    LF+++ +  ++P+  T
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCIT 364

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            A +L+ACA   A   G Q+H +  + G         +L+ +YSKC +VE + K F    
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTE 424

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             ++V W  ++  Y Q      + E F  +   G  P+   +  +L  CT  G +  G Q
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 383 -YFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
            + H IK    L      Y C  ++D+ A+ G+   A  ++ ++P + D   W +++ G 
Sbjct: 485 IHTHVIKTGFQLNV----YVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGY 539

Query: 440 RIHGNLDLAKRAAEALFEIE 459
             H   D+   A +   E+E
Sbjct: 540 VQH---DMFSEALQLFEEME 556



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 200/434 (46%), Gaps = 38/434 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L++ C  + +L E  ++H  +  SGF     + + L+D Y + G+   A  +FDE  
Sbjct: 61  YLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENS 120

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            R V S+N MI  F               + Q+ NF                +   L+R 
Sbjct: 121 NRSVFSWNKMIHVF---------------VAQKSNF----------------QVFCLFRR 149

Query: 149 MQNFENSVSNKFTLSSVLSA-VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M   E    N +T + VL A V         K++H      GFDS  +V + L D+Y K 
Sbjct: 150 MLA-EGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G I  A+++F+ +  +D+V+W AMI    Q G  EE   LF ++  S I P  +  + VL
Sbjct: 209 GYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVL 268

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +A       ELG+Q+H  + + G+   ++  + LV +YS+   + +++++F+ M   D V
Sbjct: 269 SASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           S+ SLI+G  Q G  D+ALE F  + +   +PD I    +L+AC   G + KG+Q  HS 
Sbjct: 329 SYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSH 387

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             K G++        ++DL ++      A         + +  LW  +L     +G LD 
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETE-NIVLWNVMLVA---YGQLDN 443

Query: 448 AKRAAEALFEIEPE 461
              + E   +++ E
Sbjct: 444 LSDSFEIFRQMQME 457



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 14/301 (4%)

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           N++N +   + L   L++ S  + +RL    H  I ++GFD + ++  +L D Y + G  
Sbjct: 57  NYQNYL---WLLEGCLTSGSLFETMRL----HCRISKSGFDGEPLLIDSLVDNYFRHGDQ 109

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + A ++FD+  +R V SW  MI  +  +    + F LF  ++  GI PN +TFAGVL AC
Sbjct: 110 HGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC 169

Query: 271 -ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
                A    KQVH      G+D     A+ L+ +YSK G +E++KKVFN +   D+V+W
Sbjct: 170 VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTW 229

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            ++I+G +QNG+ ++A+  F  +  S   P   V   VL+A T   L + G Q  H +  
Sbjct: 230 VAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVI 288

Query: 390 KHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K G  + ++ Y C  +V L +RS +   AE + S M  + D   + SL+ G    G  D 
Sbjct: 289 KWG--FHSETYVCNGLVALYSRSRKLISAERIFSTMNSR-DGVSYNSLISGLVQQGFSDR 345

Query: 448 A 448
           A
Sbjct: 346 A 346



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 1/206 (0%)

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           E  + +   L + + + G+R N   +  +L  C    +     ++H  +++ G+D     
Sbjct: 36  EQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLL 95

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
             +LV  Y + G+   + KVF+      + SW  +I  +       +    F  +L  G 
Sbjct: 96  IDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI 155

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+   F GVL AC    +    ++  HS    +G   +      ++DL +++G    A+
Sbjct: 156 TPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHG 443
            V + + MK D   W +++ G   +G
Sbjct: 216 KVFNCICMK-DIVTWVAMISGLSQNG 240


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 265/468 (56%), Gaps = 36/468 (7%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L ++ +I  Q+      P+   Y S+++ C    AL  G+++H+H+  +GF+  V++ + 
Sbjct: 444 LSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSV 503

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAK G                                L  A  +   +P+ D  SW
Sbjct: 504 LIDMYAKYGQ-------------------------------LALALRILRRLPEDDVVSW 532

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMI+GYV+++   EAL L+  M+ +     +    +S +SA + I+ LR G++IH    
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEME-YRGIQFDNIGFASAISACAGIRALRQGQQIHAQSY 591

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             GF +D  + +AL  +Y +CG I EA   F+K+ D++ +SW +++    Q G  EE   
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQ 651

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F  ++++    N FT+   ++A A  A  + G+Q+H  + + GYD     +++L+ +Y+
Sbjct: 652 VFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYA 711

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K G++ ++ + FN M   +++SW ++I GY+Q+G   +AL  FE +   G  P+H+ FVG
Sbjct: 712 KSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVG 771

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLV +GL YF S+ + H L   ++HY C+VDLL R+G+   A + I +MP+ 
Sbjct: 772 VLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP 831

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            D  +W +LL  C IH N+++ +RAA  L E+EPE+ ATYV ++NIYA
Sbjct: 832 ADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 206/444 (46%), Gaps = 35/444 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P + SS++    + +  E G+++H  +   GF    ++ N L+ +Y            
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALY------------ 306

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                              ++   L  A  +F  M  RD  S+ ++ISG V+      AL
Sbjct: 307 -------------------SRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  MQ  +    +  T++S+LSA +++  L  G ++H + ++ G  +D ++  +L D+
Sbjct: 348 ELFTKMQR-DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +  A + F      ++V W  M+  Y Q     + F +F ++   G+ PN FT+
Sbjct: 407 YSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C    A  LG+Q+H ++ + G+    +  S L+ MY+K G +  + ++   +P 
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPE 526

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWT++IAGY Q+ M  +AL+ FE +   G Q D+I F   ++AC     + +G Q 
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQ 585

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+     G          ++ L AR GR  EA     K+  K +   W SL+ G    G
Sbjct: 586 IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDK-NNISWNSLVSGLAQSG 644

Query: 444 NLDLAKRAAEALFEIEPE-NPATY 466
             + A +    +   E E N  TY
Sbjct: 645 YFEEALQVFVRMLRTEAEVNMFTY 668



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 200/434 (46%), Gaps = 38/434 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L++ C  + +L E  ++H  +  SGF     + + L+D Y + G+   A  +FDE  
Sbjct: 61  YLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENS 120

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            R V S+N MI  F               + Q+ NF                +   L+R 
Sbjct: 121 NRSVFSWNKMIHVF---------------VAQKSNF----------------QVFCLFRR 149

Query: 149 MQNFENSVSNKFTLSSVLSA-VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M   E    N +T + VL A V         K++H      GFDS  +V + L D+Y K 
Sbjct: 150 MLA-EGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G I  A+++F+ +  +D+V+W AMI    Q G  EE   LF ++  S I P  +  + VL
Sbjct: 209 GYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVL 268

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +A       ELG+Q+H  + + G+   ++  + LV +YS+   + +++++F+ M   D V
Sbjct: 269 SASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           S+ SLI+G  Q G  D+ALE F  + +   +PD I    +L+AC   G + KG+Q  HS 
Sbjct: 329 SYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSH 387

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             K G++        ++DL ++      A         + +  LW  +L     +G LD 
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVA---YGQLDN 443

Query: 448 AKRAAEALFEIEPE 461
              + E   +++ E
Sbjct: 444 LSDSFEIFRQMQME 457



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 14/301 (4%)

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           N++N +   + L   L++ S  + +RL    H  I ++GFD + ++  +L D Y + G  
Sbjct: 57  NYQNYL---WLLEGCLTSGSLFETMRL----HCRISKSGFDGEPLLIDSLVDNYFRHGDQ 109

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + A ++FD+  +R V SW  MI  +  +    + F LF  ++  GI PN +TFAGVL AC
Sbjct: 110 HGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC 169

Query: 271 -ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
                A    KQVH      G+D     A+ L+ +YSK G +E++KKVFN +   D+V+W
Sbjct: 170 VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTW 229

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            ++I+G +QNG+ ++A+  F  +  S   P   V   VL+A T   L + G Q  H +  
Sbjct: 230 VAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVI 288

Query: 390 KHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K G  + ++ Y C  +V L +RS +   AE + S M  + D   + SL+ G    G  D 
Sbjct: 289 KWG--FHSETYVCNGLVALYSRSRKLISAERIFSTMNSR-DGVSYNSLISGLVQQGFSDR 345

Query: 448 A 448
           A
Sbjct: 346 A 346



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 1/206 (0%)

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           E  + +   L + + + G+R N   +  +L  C    +     ++H  +++ G+D     
Sbjct: 36  EQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLL 95

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
             +LV  Y + G+   + KVF+      + SW  +I  +       +    F  +L  G 
Sbjct: 96  IDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI 155

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+   F GVL AC    +    ++  HS    +G   +      ++DL +++G    A+
Sbjct: 156 TPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHG 443
            V + + MK D   W +++ G   +G
Sbjct: 216 KVFNCICMK-DIVTWVAMISGLSQNG 240


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 250/446 (56%), Gaps = 34/446 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL+  C +  AL +GK VH ++  SGF    F+   LLD+Y KCG+I DA ++F      
Sbjct: 243 SLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVF------ 296

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                                    DE+   D  SWTAMI GY +   P EAL L+   +
Sbjct: 297 -------------------------DELSTIDLVSWTAMIVGYAQRGYPREALKLF-TDE 330

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
            +++ + N  T SSVLSA +    L +G+ +H   ++ G   D    +AL DMY KC  I
Sbjct: 331 RWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMI 389

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +AR +F+ + D+DV++W ++I  Y Q G   E   LF ++    + P+A T   VL+AC
Sbjct: 390 GDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSAC 449

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           A   A  +G  +HGY  + G    S +  +AL++ Y+KCG+ E+++ +F+ M   + ++W
Sbjct: 450 ASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITW 509

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           +++I GY   G   ++LE F  +LK   +P+ ++F  +L+AC+H+G++ +G +YF+++ +
Sbjct: 510 SAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQ 569

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            +    +  HYAC+VDLLAR+GR  EA D I K+P++PD  L  + L GCR+H   DL +
Sbjct: 570 VYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGE 629

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            A   + E+ P+    YV M+N+YAS
Sbjct: 630 VAVRRMLELHPDKACYYVLMSNLYAS 655



 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 220/418 (52%), Gaps = 37/418 (8%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++S +++ C + R  +EG+K+H  +   G  P  F+   L+DMYAKC  + D++ +FDE+
Sbjct: 140 VFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEI 198

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            +R+V  + +MI G+ +   L++   LF+ M +        ++ G               
Sbjct: 199 LDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMRE-------GLVEG--------------- 236

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
                     N++TL S+++A + +  L  GK +HGY++++GFD +  + + L D+Y KC
Sbjct: 237 ----------NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKC 286

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G I +A  +FD++   D+VSWTAMI  Y Q G   E   LF++     + PN  T + VL
Sbjct: 287 GDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVL 346

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +ACA   +  +G+ VH    ++G +  +F  +ALV MY+KC  + +++ VF  +   D++
Sbjct: 347 SACAQTGSLNMGRSVHCLGIKLGSEDATF-ENALVDMYAKCHMIGDARYVFETVFDKDVI 405

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           +W S+I+GY QNG   +ALE F+ +      PD I  V VL+AC   G    G    H  
Sbjct: 406 AWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVG-SSLHGY 464

Query: 388 KEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             K GL   + +    +++  A+ G    A  +  +M  K +   W++++GG  I G+
Sbjct: 465 AIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEK-NTITWSAMIGGYGIQGD 521



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 181/353 (51%), Gaps = 14/353 (3%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY---- 146
           D+     ++S +   G +E AR +FD +   D +SW  MI  Y   +   E +  Y    
Sbjct: 70  DLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRL 129

Query: 147 -RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
            + +  ++N V      S VL A S ++    G+++H  I++ G   D  V + L DMY 
Sbjct: 130 RKCLNEYDNVV-----FSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYA 183

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KC  + ++R++FD+++DR+VV WT+MI  Y Q    +EG  LF+ + +  +  N +T   
Sbjct: 184 KCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGS 243

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           ++ AC    A   GK VHGY+ + G+D  SF  + L+ +Y KCG++ ++  VF+ +   D
Sbjct: 244 LVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTID 303

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           LVSWT++I GYAQ G P +AL+ F         P+ +    VL+AC   G ++ G +  H
Sbjct: 304 LVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG-RSVH 362

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +  K G +  A     +VD+ A+     +A  V   +    D   W S++ G
Sbjct: 363 CLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETV-FDKDVIAWNSIISG 413



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%)

Query: 147 RMMQNFENSVSNK-FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           R + + ++  SN  F+L  +   VS++      ++IH  ++  G   D +  + L  +YG
Sbjct: 29  RTIASIQSISSNPCFSLLGICKTVSSL------RKIHALLVVHGLSEDLLCETKLVSLYG 82

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP-NAFTFA 264
             G +  AR +FD++ + D+ SW  MI  YF      E    ++  ++  +   +   F+
Sbjct: 83  SFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFS 142

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            VL AC++    + G+++H  + ++G  P SF  + LV MY+KC  VE+S++VF+ +   
Sbjct: 143 IVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDR 201

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           ++V WTS+I GY QN    + L  F  + +   + +      ++TACT  G + +G ++ 
Sbjct: 202 NVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQG-KWV 260

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           H    K G    +     ++DL  + G   +A  V  ++    D   W +++ G
Sbjct: 261 HGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELS-TIDLVSWTAMIVG 313


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 253/453 (55%), Gaps = 40/453 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P       +++ C +  AL+EGK++H  +   GF    F+ + L+ MY+KCG I   + +
Sbjct: 112 PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKV 171

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M+++DV S+N++I G+ + G +E A  +F+EMP++D+FSWT +I G  +  +   A 
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAAR 231

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           D++  M    NSVS                                       W+A+ + 
Sbjct: 232 DVFDRMP-IRNSVS---------------------------------------WNAMING 251

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G  N A+++FD+M +R +V+W +MI  Y +  +  +   LF  +++  I PN  T 
Sbjct: 252 YMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTI 311

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G ++A +   +   G+ VH Y+ + G+       + L+ MYSKCG+V+++ +VF  +P+
Sbjct: 312 LGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPK 371

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             L  WTS+I G   +G+ ++ LE F+ + ++G +P  I F+GVL AC+HAG  +   +Y
Sbjct: 372 KKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRY 431

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +   +G+  + +HY C++D+L R+G   EA+D I +MP+K +K +W SLL G R HG
Sbjct: 432 FKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHG 491

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N+ + + AA+ L ++ P+    YV ++N+YA+A
Sbjct: 492 NIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAA 524



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 179/339 (52%), Gaps = 16/339 (4%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSV 165
           +L+ A +LFD + +    SW  +I  Y+   +  +A+ L+ +++ +F   V + FTL  V
Sbjct: 64  NLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDF---VPDSFTLPCV 120

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L   + +  L+ GK+IHG +++ GF  D+ V S+L  MY KCG I   R++FD+M D+DV
Sbjct: 121 LKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDV 180

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSW ++I  Y + G  E    +F E+ +     ++F++  +++  +     E  + V   
Sbjct: 181 VSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFDR 236

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           M        S + +A+++ Y K G+   +K++F+ MP   LV+W S+I GY +N    KA
Sbjct: 237 MPIRN----SVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKA 292

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIV 404
           L+ FE++L+    P++   +G ++A +  G+V  G  ++ HS   K G          ++
Sbjct: 293 LKLFEVMLREDISPNYTTILGAVSAAS--GMVSLGTGRWVHSYIVKSGFKTDGVLGTLLI 350

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           ++ ++ G    A  V   +P K     W S++ G  +HG
Sbjct: 351 EMYSKCGSVKSALRVFRSIPKKKLGH-WTSVIVGLGMHG 388



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 143/301 (47%), Gaps = 49/301 (16%)

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYG--KCGSINEARQIFDKMVDRDVVSWTAMIG 233
           R   ++H   ++T   +   V S L  +Y   +  ++  A  +FD + +  +VSW  +I 
Sbjct: 29  REANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIK 88

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            Y +  R  +  ALF +L+   + P++FT   VL  CA   A + GKQ+HG + +IG+  
Sbjct: 89  CYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGV 147

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F  S+LV MYSKCG +E  +KVF+ M   D+VSW SLI GYA+ G  + ALE FE   
Sbjct: 148 DKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFE--- 204

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
                                            + EK   ++T      ++D L++SG+ 
Sbjct: 205 --------------------------------EMPEKDSFSWTI-----LIDGLSKSGKL 227

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP-ATYVTMANI 472
             A DV  +MP++ +   W +++ G    G+ + AK     LF+  PE    T+ +M   
Sbjct: 228 EAARDVFDRMPIR-NSVSWNAMINGYMKAGDSNTAKE----LFDQMPERSLVTWNSMITG 282

Query: 473 Y 473
           Y
Sbjct: 283 Y 283


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 266/476 (55%), Gaps = 24/476 (5%)

Query: 12  KEALQILHQISHPSPSI------YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           ++A+ +  Q+    P +       SS+++   +   L EG++VH H+  +GF+    I+ 
Sbjct: 84  RDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIAT 143

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+D+YA+CG + DA+ +FD +  +D   YNTMI+ + + G +E A  LF+ MP+R+  +
Sbjct: 144 TLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHT 203

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
              M+ GY        A  ++ M     N V N    ++++S  +    +   + +    
Sbjct: 204 LMEMVGGYSARGDMDSAKHVFEM----ANGVVNMVLCTAMISGFAKTGSVDDARSV---- 255

Query: 186 MRTGFDS----DEVVWSAL-SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
               FD     D   W+ +   MY KCG + +AR++FD M +R+VV WT+MI  Y Q G+
Sbjct: 256 ----FDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGK 311

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            ++   LF ++  SG++ +  T A V+++C    A +LG+ VH Y    G        ++
Sbjct: 312 FKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNS 371

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQP 359
           L+ MYSKCG+++ + ++F G+ + D  SWT +I G+A NG+  +AL+ F  + + G   P
Sbjct: 372 LIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMP 431

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           + I F+GVLT+C+H GLV++G  +FH + + +G+    +HY C+VDLL R+    EAE  
Sbjct: 432 NEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQF 491

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           I +MP+ PD  +W SLL  CR  G + LA+  AE + E+EP      V ++N+YA+
Sbjct: 492 IEEMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYAT 547


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 255/450 (56%), Gaps = 31/450 (6%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+   +SS++        +  G+++HS +   GF   +F+   L+DMYAKC +      
Sbjct: 7   YPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD------ 60

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                    +  A  +FD+MP+R+  SW +MI G+   N    A
Sbjct: 61  -------------------------MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRA 95

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + +++ +   +  + N+ ++SSVLSA + +  L  G+++HG +++ G      V ++L D
Sbjct: 96  VGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMD 155

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KC   +E  ++F  + DRDVV+W  ++  + Q  + EE    F  + + GI P+  +
Sbjct: 156 MYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEAS 215

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F+ VL++ A  AA   G  +H  + ++GY        +L+ MY+KCG++ ++ +VF G+ 
Sbjct: 216 FSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE 275

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +++SWT++I+ Y  +G  ++ +E FE +L  G +P H+ FV VL+AC+H G V++GL 
Sbjct: 276 DHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLA 335

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +F+S+K+ H +    +HYAC+VDLL R+G   EA+  I  MPMKP   +W +LLG CR +
Sbjct: 336 HFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKY 395

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANI 472
           GNL + + AAE LFE+EP NP  YV +AN+
Sbjct: 396 GNLKMGREAAERLFEMEPYNPGNYVLLANM 425



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 178/408 (43%), Gaps = 44/408 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS++  C     L  G++VH  +   G  P  ++ N L+DMY KC    +   L
Sbjct: 110 PNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKL 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  + +RDV ++N ++ GF +    E+A N F          W     G +    P EA 
Sbjct: 170 FQCVGDRDVVTWNVLVMGFVQNDKFEEACNYF----------WVMRREGIL----PDEA- 214

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                            + S+VL + +++  L  G  IH  I++ G+  +  +  +L  M
Sbjct: 215 -----------------SFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITM 257

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+ +A Q+F+ + D +V+SWTAMI  Y   G   +   LF  ++  GI P+  TF
Sbjct: 258 YAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTF 317

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             VL+AC+     E G      M +I   +P     + +V +  + G ++ +K+    MP
Sbjct: 318 VCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMP 377

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKG 380
            +P    W +L+    + G      E  E L +     P + V +     CT +G +++ 
Sbjct: 378 MKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLA--NMCTRSGRLEEA 435

Query: 381 -----LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
                L   + ++++ G ++        V       R H + D I KM
Sbjct: 436 NEVRRLMGVNGVRKEPGCSWIDVKNMTFV--FTAHDRSHSSSDEIYKM 481


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 233/376 (61%), Gaps = 1/376 (0%)

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G  +  + E  R +FDEM +RD  SW  +I G   + +  EAL + R M   +  + + F
Sbjct: 113 GGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWR-DGFMPDTF 171

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TLS+VL   +    ++ G  +HGY ++ GFD+D  V S+L DMY  C  ++ + ++FD  
Sbjct: 172 TLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSF 231

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            D D V W +M+  Y Q G  EE   +F  ++++G+RP   TF+ ++ A  + +   LGK
Sbjct: 232 SDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGK 291

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H Y+ R  ++   F +S+L+ MY KCGNV+ +++VFNG+  PD+VSWT++I GYA +G
Sbjct: 292 QLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 351

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +A   FE +     +P+HI F+ VLTAC+HAGLVD G +YF+S+  ++G   + +H 
Sbjct: 352 PTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHC 411

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           A + D L R+G   EA + IS+M +KP   +W++LL  CR+H N  LA+  A+ +FE+EP
Sbjct: 412 AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEP 471

Query: 461 ENPATYVTMANIYASA 476
           ++  ++V ++N+Y+++
Sbjct: 472 KSMGSHVILSNMYSAS 487



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 163/332 (49%), Gaps = 38/332 (11%)

Query: 8   QRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
            +R +EAL ++ ++      P     S+++    +   ++ G  VH +   +GF   VF+
Sbjct: 148 HKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFV 207

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            + L+DMYA C  +  +  +FD   + D   +N+M++G+ + GS+E+A  +F  M Q   
Sbjct: 208 GSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQ--- 264

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
                  +G     +P+                    T SS++ A   +  LRLGK++H 
Sbjct: 265 -------AGV----RPVPV------------------TFSSLIPAFGNLSLLRLGKQLHA 295

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R  F+ +  + S+L DMY KCG+++ AR++F+ +   D+VSWTAMI  Y   G   E
Sbjct: 296 YLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTE 355

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALV 302
            F LF  +    ++PN  TF  VL AC+     + G +    M+ + G+ P     +AL 
Sbjct: 356 AFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALA 415

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLI 333
               + G+++ +    + M  +P    W++L+
Sbjct: 416 DTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 447


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 155/381 (40%), Positives = 234/381 (61%), Gaps = 6/381 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I+ + K G L  A+++FD+MP R+  SWT MIS Y       +AL+   +M   E  
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLR-EGV 62

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N FT SSVL A   +  LR   ++H  I++ G DSD  V SAL D+Y + G +  A +
Sbjct: 63  RPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD+MV  D+V W+++I  + Q    +E   LF  + ++G      T   VL AC   A 
Sbjct: 120 VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            ELG+QVH ++ +  YD      +AL+ MY KCG++E++  VF  M   D++SW+++IAG
Sbjct: 180 LELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG 237

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
            AQNG   +AL+ FE +   G +P+++  VGVL AC+HAGLV++GL YFHS+KE  G+  
Sbjct: 238 LAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDP 297

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HY C++DLL R+GR  EA D+I++M  +PD   W +LL  CR+H N+D+A  AA+ +
Sbjct: 298 GREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQI 357

Query: 456 FEIEPENPATYVTMANIYASA 476
             ++P++  TYV ++NIYA+ 
Sbjct: 358 LRLDPQDAGTYVLLSNIYANT 378



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 175/355 (49%), Gaps = 41/355 (11%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N + L+  + +L +   P+   YSS+++ C     L   +++H  +   G    VF+ + 
Sbjct: 47  NDKALEFLVLMLREGVRPNMFTYSSVLRACD---GLFNLRQLHCCIIKIGLDSDVFVRSA 103

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+Y++ G + +A  +FDEM   D+  ++++I+GF +    ++A  LF  M +      
Sbjct: 104 LIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKR------ 157

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
               +G+                      ++ + TL+SVL A + +  L LG+++H +++
Sbjct: 158 ----AGF----------------------LAQQTTLTSVLRACTGLALLELGRQVHVHVL 191

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +  +D D ++ +AL DMY KCGS+ +A  +F +MV++DV+SW+ MI    Q G  +E   
Sbjct: 192 K--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALK 249

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHA--AEELGKQVHGYMTRIGYDPYSFAASALVHM 304
           LF  +   GI+PN  T  GVL AC+ HA   EE     H      G DP       ++ +
Sbjct: 250 LFESMKVLGIKPNYVTIVGVLFACS-HAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDL 308

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
             + G +  +  + N M   PD V+W +L+     +   D A+   + +L+   Q
Sbjct: 309 LGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQ 363



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 5/143 (3%)

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F  + L++MY K G + +++ VF+ MP  ++VSWT++I+ Y+   + DKALE+  L+L+ 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +P+   +  VL AC   GL +  L+  H    K GL       + ++D+ +R G    
Sbjct: 61  GVRPNMFTYSSVLRACD--GLFN--LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 416 AEDVISKMPMKPDKFLWASLLGG 438
           A  V  +M +  D  +W+S++ G
Sbjct: 117 ALRVFDEM-VTGDLVVWSSIIAG 138


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 256/452 (56%), Gaps = 33/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P +Y S I  C Q++ LE+ +K+H+HL SS F    F+ N L+ MY KC ++ DA   
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDA--- 105

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                       RN+FD+M ++D  SWT++I+GY + + P+EA+
Sbjct: 106 ----------------------------RNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAI 137

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L   M        N FT +S+L A  A      G++IH   ++ G+  D  V SAL DM
Sbjct: 138 GLLPGMLKGRFK-PNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDM 196

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG ++ A  +FDK+  ++ VSW A+I  + ++G  E     F+E++++G     FT+
Sbjct: 197 YARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTY 256

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + V ++ A   A E GK VH ++ +      +F  + L+ MY+K G++ +++KVF+ +  
Sbjct: 257 SSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDN 316

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLV+W S++  +AQ G+  +A+ +FE + KSG   + I F+ +LTAC+H GLV +G +Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRY 376

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +KE + L    DHY  +V LL R+G  + A   I KMPM+P   +W +LL  CR+H 
Sbjct: 377 FEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHK 435

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N  + + AA+ +FE++P++    V + NIYAS
Sbjct: 436 NAKVGQFAADHVFELDPDDSGPPVLLYNIYAS 467



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 159/370 (42%), Gaps = 68/370 (18%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEE----------------- 44
           I + C  R + +A  +  Q+       ++SLI    QN    E                 
Sbjct: 93  IHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNG 152

Query: 45  ------------------GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
                             G+++H+     G+   V++ + LLDMYA+CG +  A  +FD+
Sbjct: 153 FTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDK 212

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           +  ++  S+N +ISGF + G  E A   F EM                            
Sbjct: 213 LDSKNGVSWNALISGFARKGDGESALMTFAEM---------------------------- 244

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
            +   FE   +  FT SSV S+++ +  L  GK +H +++++       V + L DMY K
Sbjct: 245 -LRNGFE---ATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAK 300

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            GS+ +AR++FD++ ++D+V+W +M+  + Q G  +E  + F E+ KSG+  N  TF  +
Sbjct: 301 SGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCI 360

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPD 325
           L AC+     + GK+    M     +P       +V +  + G +  +      MP  P 
Sbjct: 361 LTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPT 420

Query: 326 LVSWTSLIAG 335
              W +L+A 
Sbjct: 421 AAVWGALLAA 430



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 250 ELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           +L+ +G + P    +   + ACA     E  +++H ++    +   +F  ++L+HMY KC
Sbjct: 40  DLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKC 99

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
            +V +++ VF+ M R D+VSWTSLIAGYAQN MP +A+     +LK   +P+   F  +L
Sbjct: 100 RSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLL 159

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            A         G Q  H++  K G        + ++D+ AR G+   A  V  K+  K +
Sbjct: 160 KAAGAYADSGTGRQ-IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK-N 217

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
              W +L+ G    G+ + A      +     E  AT+ T +++++S
Sbjct: 218 GVSWNALISGFARKGDGESALMTFAEMLRNGFE--ATHFTYSSVFSS 262


>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 598

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 252/437 (57%), Gaps = 33/437 (7%)

Query: 40  RALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           +AL  G+ VHS     G +   V++ N L+DMYA C +                      
Sbjct: 125 KALSCGQLVHSLAIKIGVQGSSVYVDNSLMDMYATCCD---------------------- 162

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
                   S+++AR +FD++  + +  WT +I+GY         L ++R M   E ++S 
Sbjct: 163 --------SMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQMFLEEGALS- 213

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
            F+ S    A ++I    LGK++H  +++ GF+S+  V +++ DMY KC   +EA+++F 
Sbjct: 214 LFSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFS 273

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            M  +D ++W  +I   F+     E   +FS ++  G+ P+ F+F   + ACA+ A    
Sbjct: 274 VMTHKDTITWNTLIAG-FEALDSRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYC 332

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G+Q+HG + R G D Y   ++AL++MY+KCGN+ +S+K+F+ MP  +LVSWTS+I GY  
Sbjct: 333 GQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGD 392

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +G    A+E F  +++SG +PD +VF+ VL+AC+HAGLVD+GL+YF  +   + +T   +
Sbjct: 393 HGYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIE 452

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
            Y C+VDL  R+GR  EA  +I  MP  PD+ +WA+LLG C++H    +AK AA    ++
Sbjct: 453 IYGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLGACKVHNQPSVAKFAALRALDM 512

Query: 459 EPENPATYVTMANIYAS 475
           +P +  TY  ++NIYA+
Sbjct: 513 KPISAGTYALISNIYAA 529



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 166/357 (46%), Gaps = 24/357 (6%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E   C  + + S F K  S+++   LFD+MPQR+  +WTAMI+     N  + A  ++  
Sbjct: 60  EESFCPSHFLKSSFNKV-SIKEPHALFDKMPQRNVVTWTAMITSNNSRNNHMRAWSVFPQ 118

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGK- 206
           M               +   V A+ C   G+ +H   ++ G     V V ++L DMY   
Sbjct: 119 M---------------LRDGVKALSC---GQLVHSLAIKIGVQGSSVYVDNSLMDMYATC 160

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           C S++ AR +FD +  +  V WT +I  Y   G    G  +F ++       + F+F+  
Sbjct: 161 CDSMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQMFLEEGALSLFSFSIA 220

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
             ACA   +  LGKQVH  + + G++      ++++ MY KC     +K++F+ M   D 
Sbjct: 221 ARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSVMTHKDT 280

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           ++W +LIAG+       ++L  F  ++  G  PD   F   + AC +  ++  G Q  H 
Sbjct: 281 ITWNTLIAGFEALD-SRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYCG-QQLHG 338

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +  + GL    +    ++ + A+ G   ++  + SKMP   +   W S++ G   HG
Sbjct: 339 VIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPC-TNLVSWTSMINGYGDHG 394



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 14/195 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++S +  C     L  G+++H  +  SG    + ISN L+ MYAKCGNI+D++ +
Sbjct: 312 PDCFSFTSAVGACANLAVLYCGQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKI 371

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQP 139
           F +M   ++ S+ +MI+G+   G  + A  LF+EM +     D   + A++S        
Sbjct: 372 FSKMPCTNLVSWTSMINGYGDHGYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLV 431

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG--KEIHGYIMRTGFDSDEVVW 197
            E L  +R+M ++ N   +      V+         R G  KE +  I    F+ DE +W
Sbjct: 432 DEGLRYFRLMTSYYNITPDIEIYGCVVDLFG-----RAGRVKEAYQLIENMPFNPDESIW 486

Query: 198 SALSDMYGKCGSINE 212
           +AL    G C   N+
Sbjct: 487 AAL---LGACKVHNQ 498


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 174/498 (34%), Positives = 281/498 (56%), Gaps = 50/498 (10%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+   Y++LI    ++  +   ++V   +     +P +   N L+  YA  G    A  
Sbjct: 72  YPNVFSYNTLINAYAKHSLIHLARQVFDEIP----QPDIVSYNTLIAAYADRGECRPALR 127

Query: 83  LFDEMQERD------------------------------VCSY-------NTMISGFTKG 105
           LF E++E                                VC Y       N +++ +++ 
Sbjct: 128 LFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRK 187

Query: 106 GSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
           G L +AR +F EM +   RD  SW AMI    ++ + +EA++L+R M      V + FT+
Sbjct: 188 GFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKV-DMFTM 246

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC-GSINEARQIFDKMV 221
           +SVL+A + ++ L  G + HG ++++GF  +  V S L D+Y KC G + E R++F+++ 
Sbjct: 247 ASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA 306

Query: 222 DRDVVSWTAMIGRYFQ-EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             D+V W  MI  + Q E   E+G   F E+  +G  P+  +F  V +AC++ ++  +GK
Sbjct: 307 APDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGK 366

Query: 281 QVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           QVH    +  I Y+  S   +ALV MYSKCGNV ++++VF+ MP  ++VS  S+IAGYAQ
Sbjct: 367 QVHALAIKSDIPYNRVS-VNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQ 425

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +G+  ++L  FEL+L+    P+ I F+ VL+AC H G V++G +YF+ +KE+  +   A+
Sbjct: 426 HGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAE 485

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY+C++DLL R+G+  EAE +I  MP  P    WA+LLG CR HGN++LA +AA    ++
Sbjct: 486 HYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQL 545

Query: 459 EPENPATYVTMANIYASA 476
           EP N A YV ++N+YASA
Sbjct: 546 EPYNAAPYVMLSNMYASA 563



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/402 (31%), Positives = 208/402 (51%), Gaps = 10/402 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + +L++ C   R L  GK +H+    S   P  ++SN    +Y+KCG++ +AQT FD  Q
Sbjct: 12  FRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQ 71

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
             +V SYNT+I+ + K   +  AR +FDE+PQ D  S+  +I+ Y    +   AL L+  
Sbjct: 72  YPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAE 131

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           ++     + + FTLS V+ A      + L +++H +++  G+D    V +A+   Y + G
Sbjct: 132 VRELRFGL-DGFTLSGVIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKG 188

Query: 209 SINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
            +NEAR++F +M +   RD VSW AMI    Q     E   LF E+++ G++ + FT A 
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMAS 248

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-GNVENSKKVFNGMPRP 324
           VL A         G Q HG M + G+   S   S L+ +YSKC G +   +KVF  +  P
Sbjct: 249 VLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAP 308

Query: 325 DLVSWTSLIAGYAQ-NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           DLV W ++I+G++Q   + +  +  F  +  +G  PD   FV V +AC++      G Q 
Sbjct: 309 DLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQ- 367

Query: 384 FHSIKEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVISKMP 424
            H++  K  + Y        +V + ++ G  H+A  V   MP
Sbjct: 368 VHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP 409



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 141/313 (45%), Gaps = 39/313 (12%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS----------- 209
           T  ++L A  A + L  GK +H    ++       + +  + +Y KCGS           
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 210 --------------------INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
                               I+ ARQ+FD++   D+VS+  +I  Y   G       LF+
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           E+ +     + FT +GV+ AC D     L +Q+H ++   GYD Y+   +A++  YS+ G
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVG--LVRQLHCFVVVCGYDCYASVNNAVLACYSRKG 188

Query: 310 NVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
            +  +++VF  M      D VSW ++I    Q+    +A+E F  +++ G + D      
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMAS 248

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR-SGRFHEAEDVISKMPM 425
           VLTA T    +  G+Q FH +  K G    +   + ++DL ++ +G   E   V  ++  
Sbjct: 249 VLTAFTCVKDLVGGMQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA- 306

Query: 426 KPDKFLWASLLGG 438
            PD  LW +++ G
Sbjct: 307 APDLVLWNTMISG 319



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 119/282 (42%), Gaps = 44/282 (15%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHS-HLKSSGFKPGVFISNCLLDMYAKC 74
           ++ H   HP    +  +   C    +   GK+VH+  +KS      V ++N L+ MY+KC
Sbjct: 336 EMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKC 395

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD----NFSWTAMI 130
           GN+ DA+ +FD M E ++ S N+MI+G+ + G   ++  LF+ M Q+D      ++ A++
Sbjct: 396 GNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVL 455

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           S  V   +  E    + MM+                      +  R+  E   Y      
Sbjct: 456 SACVHTGKVEEGQKYFNMMK----------------------ERFRIEPEAEHY------ 487

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFS 249
                  S + D+ G+ G + EA +I + M  +   + W  ++G   + G  E      +
Sbjct: 488 -------SCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAAN 540

Query: 250 ELIKSGIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           E ++  + P NA  +  + N  A  A  E    V   M   G
Sbjct: 541 EFLQ--LEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERG 580


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 264/483 (54%), Gaps = 66/483 (13%)

Query: 29  YSSLI---QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           YS L+   Q C ++++   GKK+H H+  +G      +SN L++MY KCG I D      
Sbjct: 3   YSHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQD------ 56

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
                                    A NLF+++P RD  SW ++++   + N P   L +
Sbjct: 57  -------------------------ALNLFNQLPHRDPISWASILTANNQANLPHLTLSM 91

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           +  M   +    + +  + ++ A + +  ++ GK++H   + +    D+VV S+L DMY 
Sbjct: 92  FPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYA 151

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF---------------SE 250
           KCG  +  R +FD +  ++ +SWTAMI  Y Q GR+ +   LF               S 
Sbjct: 152 KCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISG 211

Query: 251 LIKSG-----------IRP------NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
           L++SG           +R       + F  + ++ A A+ A   LGKQ+H  +  +GY+ 
Sbjct: 212 LVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYES 271

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F ++ALV MY+KC +V  +KK+F  M + D+VSWTS+I G AQ+G+ ++AL  +  +L
Sbjct: 272 SLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRML 331

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
            +G +P+ + FVG++ AC+H GLV KG  +F+S+ + +G+  +  HY C++DLL+RSG  
Sbjct: 332 STGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHL 391

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            EAE++I  MP KPD+  WA+LL  C  H N  +  R A+ L  ++PE+P+TY+ ++NIY
Sbjct: 392 EEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIY 451

Query: 474 ASA 476
           ASA
Sbjct: 452 ASA 454



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 179/315 (56%), Gaps = 2/315 (0%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P   +++ L++ C    A+++GK+VH+    S       + + L+DMYAKCG     + 
Sbjct: 102 QPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRV 161

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD +  ++  S+  MISG+ + G    A  LF +MP ++  SWTA+ISG V+    +++
Sbjct: 162 VFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDS 221

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             L+  M++    + + F LSS++ A + +  L LGK+IH  ++  G++S   V +AL D
Sbjct: 222 FYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVD 281

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KC  +  A++IF +MV RD+VSWT++I    Q G  EE  +L++ ++ +G++PN  T
Sbjct: 282 MYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVT 341

Query: 263 FAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F G++ AC+       G+     M +  G +P     + L+ + S+ G++E ++ +   M
Sbjct: 342 FVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAM 401

Query: 322 P-RPDLVSWTSLIAG 335
           P +PD  +W +L++ 
Sbjct: 402 PFKPDEATWAALLSA 416


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 262/453 (57%), Gaps = 36/453 (7%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           + +I++++I+ C   + +   K++H  +  +G    + I   L+  Y+KC  I DA  LF
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF 352

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                        M+ G                   ++  SWTA+ISGYV+  +   A++
Sbjct: 353 ------------CMMHGV------------------QNVVSWTAIISGYVQNGRTDRAMN 382

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L+  M+  E    N FT S++L+A +A+       +IH  +++T +++   V +ALSD Y
Sbjct: 383 LFCQMRR-EGVRPNHFTYSTILTANAAVS----PSQIHALVVKTNYENSPSVGTALSDSY 437

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G  NEA +IF+ + ++D+V+W+AM+  Y Q G  E    +F +L K G+ PN FTF+
Sbjct: 438 SKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFS 497

Query: 265 GVLNACADHAAE-ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            VLNACA   A  E GKQ H    + G+      +SALV MY+K GN+E++ +VF     
Sbjct: 498 SVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVD 557

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLVSW S+I+GYAQ+G   K+L+ FE +     + D I F+GV++ACTHAGLV++G +Y
Sbjct: 558 RDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRY 617

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  + + + +  T +HY+C+VDL +R+G   +A D+I+KMP      +W +LL  CR+H 
Sbjct: 618 FDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHL 677

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N+ L + AAE L  ++P++ A YV ++NIYA+A
Sbjct: 678 NVQLGELAAEKLISLQPQDSAAYVLLSNIYATA 710



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 230/473 (48%), Gaps = 50/473 (10%)

Query: 12  KEALQILHQISHP-SPSIYSSL-----IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           KEAL +   +    SP+  SSL     +  C  +R +  GK+VH      GF   V +  
Sbjct: 74  KEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIV--GKQVHCQCIKCGFVEDVSVGT 131

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMY K  ++ D + +FDEM+ ++V S+ ++++G+ + G  EQA  LF +M       
Sbjct: 132 SLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQM------- 184

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                      E    N FT ++VL  ++A   +  G ++H  +
Sbjct: 185 -------------------------QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMV 219

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +++G DS   V +++ +MY K   +++A+ +FD M +R+ VSW +MI  +   G   E F
Sbjct: 220 IKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAF 279

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF  +   G++     FA V+  CA+       KQ+H  + + G D      +AL+  Y
Sbjct: 280 ELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAY 339

Query: 306 SKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           SKC  ++++ K+F  M    ++VSWT++I+GY QNG  D+A+  F  + + G +P+H  +
Sbjct: 340 SKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTY 399

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             +LTA  +A +    +   H++  K     +      + D  ++ G  +EA  +   + 
Sbjct: 400 STILTA--NAAVSPSQI---HALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELID 454

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
            K D   W+++L G    G+++ A +    L +  +EP N  T+ ++ N  A+
Sbjct: 455 EK-DIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEP-NEFTFSSVLNACAA 505



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 172/339 (50%), Gaps = 2/339 (0%)

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
            ++ LFDE PQ+       ++  + R +Q  EAL+L+  ++    S ++  +LS VL   
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRR-SGSPTDGSSLSCVLKVC 102

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
             +    +GK++H   ++ GF  D  V ++L DMY K  S+ +  ++FD+M  ++VVSWT
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           +++  Y Q G  E+   LFS++   GI+PN FTFA VL   A   A E G QVH  + + 
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G D   F  +++V+MYSK   V ++K VF+ M   + VSW S+IAG+  NG+  +A E F
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +   G +    +F  V+  C +   +    Q  H    K+G  +  +    ++   ++
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ-LHCQVIKNGSDFDLNIKTALMVAYSK 341

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
                +A  +   M    +   W +++ G   +G  D A
Sbjct: 342 CSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRA 380


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/395 (37%), Positives = 235/395 (59%), Gaps = 2/395 (0%)

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF      D  + +++I+ + + G +  AR +FDE+P RD+ SW +MI+GY +     EA
Sbjct: 148 LFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREA 207

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           ++++R M   +    ++ +L S+L A   +  L LG+ + G+++  G   +  + SAL  
Sbjct: 208 VEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALIS 267

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG +  AR+IFD M  RDV++W A+I  Y Q G  +E   LF  + +  +  N  T
Sbjct: 268 MYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKIT 327

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL+ACA   A +LGKQ+  Y ++ G+    F A+AL+ MY+K G+++N+++VF  MP
Sbjct: 328 LTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMP 387

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTACTHAGLVDKG 380
           + +  SW ++I+  A +G   +AL  F+ +     G +P+ I FVG+L+AC HAGLVD+G
Sbjct: 388 QKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEG 447

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            + F  +    GL    +HY+C+VDLLAR+G  +EA D+I KMP KPDK    +LLG CR
Sbjct: 448 YRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACR 507

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
              N+D+ +R    + E++P N   Y+  + IYA+
Sbjct: 508 SKKNVDIGERVMRMILEVDPSNSGNYIISSKIYAN 542



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 158/333 (47%), Gaps = 41/333 (12%)

Query: 12  KEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +EA+++  ++       P      SL+  C +   LE G+ V   +   G     +I + 
Sbjct: 205 REAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSA 264

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MYAKCG +  A+ +FD M  RDV ++N +ISG+ + G  ++A  LF  M +      
Sbjct: 265 LISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKE------ 318

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                     +   +NK TL++VLSA + I  L LGK+I  Y  
Sbjct: 319 --------------------------DCVTANKITLTAVLSACATIGALDLGKQIDEYAS 352

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + GF  D  V +AL DMY K GS++ A+++F  M  ++  SW AMI      G+ +E  +
Sbjct: 353 QRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALS 412

Query: 247 LFSELIKS--GIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVH 303
           LF  +     G RPN  TF G+L+AC      + G ++   M T  G  P     S +V 
Sbjct: 413 LFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVD 472

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           + ++ G++  +  +   MP +PD V+  +L+  
Sbjct: 473 LLARAGHLYEAWDLIRKMPEKPDKVTLGALLGA 505



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 3/206 (1%)

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             +LF  ++   + P+ FTF     +CA+ A+       H  + ++        A +L+ 
Sbjct: 106 ALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLIT 165

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHI 362
            Y++CG V +++KVF+ +P  D VSW S+IAGYA+ G   +A+E F E+  + G +PD +
Sbjct: 166 AYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEM 225

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
             V +L AC   G ++ G ++      + G+T  +   + ++ + A+ G    A  +   
Sbjct: 226 SLVSLLGACGELGDLELG-RWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDG 284

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLA 448
           M  + D   W +++ G   +G  D A
Sbjct: 285 MAAR-DVITWNAVISGYAQNGMADEA 309


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 176/507 (34%), Positives = 273/507 (53%), Gaps = 45/507 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L+ A +I + +  PS  +Y+ +++   +   L +   +   L+  G  P  F    +L  
Sbjct: 193 LRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKA 252

Query: 71  YAKCGNISDAQT----LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
                ++   +     +     + D   YN++I  + +  ++E A+ LFDEM  RD+ SW
Sbjct: 253 IGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSW 312

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             MISGYVR  +  +A++ +R MQ   N   ++ T+ S LSA +A++ L LG EIH Y+ 
Sbjct: 313 NVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVR 372

Query: 187 RT-GFDSDEVVWSALSDMYGKCGSIN-------------------------------EAR 214
           +  GF +   + +AL DMY KCG +N                               EAR
Sbjct: 373 KELGFTTR--IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREAR 430

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            +FDK   RDVV WTAMI  Y Q    ++  ALF E+    ++P+ FT   +L  CA   
Sbjct: 431 DLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLG 490

Query: 275 AEELGKQVHGYM--TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
           A E GK +HGY+   RI  D      +AL+ MYSKCG V+ S ++F  +   D  SWTS+
Sbjct: 491 ALEQGKWIHGYLDENRITMD--VVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSI 548

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I G A NG   +AL  F  + + G +PD I F+GVL+AC+H GLV++G ++F+S+K+ H 
Sbjct: 549 ICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHR 608

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF---LWASLLGGCRIHGNLDLAK 449
           +    +HY C++DLL R+G   EAE++I ++P++  +    L+ +LL  CRIH N+D+ +
Sbjct: 609 IEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 668

Query: 450 RAAEALFEIEPENPATYVTMANIYASA 476
           R A+ L  IE  + + +  +ANIYAS 
Sbjct: 669 RLAKKLENIESCDSSIHTLLANIYASV 695



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 158/324 (48%), Gaps = 23/324 (7%)

Query: 164 SVLSAVSAIQCLRLGK------EIHGYIMRTGFDSDEVVWSALSDMYGKC-----GSINE 212
           S L+  S I+CLR  K      +I   I R G + D      ++ +   C     G++  
Sbjct: 139 SKLTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDR---DTINKLMAFCADSSLGNLRY 195

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A +IF+ + D  +  +  M+  Y + G   +   LF +L + G+ P+ FT+  VL A   
Sbjct: 196 AEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGC 255

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
                 G++V G++ + G D  ++  ++L+ MY +  NVEN+KK+F+ M   D VSW  +
Sbjct: 256 LRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 315

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           I+GY +    + A+  F  + + G + PD    V  L+ACT    ++ G +  + ++++ 
Sbjct: 316 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKEL 375

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           G T   D+   ++D+ A+ G  + A ++  +M MK +   W S++ G    G+L    R 
Sbjct: 376 GFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDL----RE 428

Query: 452 AEALFEIEP-ENPATYVTMANIYA 474
           A  LF+  P  +   +  M N Y 
Sbjct: 429 ARDLFDKSPVRDVVLWTAMINGYV 452


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 255/470 (54%), Gaps = 38/470 (8%)

Query: 43  EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102
           E GK++H      GF   + ++N LL++YAK  +++ A+ +F EM E +V S+N MI GF
Sbjct: 232 ELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGF 291

Query: 103 T-----------------------------------KGGSLEQARNLFDEMPQRDNFSWT 127
                                               + G +E  R +F  +PQ    +W 
Sbjct: 292 GQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWN 351

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AM+SGY  Y    EA+  +R MQ F+N   +K TLS +LS+ + ++ L  GK+IHG ++R
Sbjct: 352 AMLSGYSNYEHYEEAISNFRQMQ-FQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIR 410

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFA 246
           T    +  + S L  +Y +C  +  +  IFD  ++  D+  W +MI  +       +   
Sbjct: 411 TEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALI 470

Query: 247 LFSELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           LF  + ++ +  PN  +FA VL++C+   +   G+Q HG + + GY   SF  +AL  MY
Sbjct: 471 LFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMY 530

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCG ++++++ F+ + R + V W  +I GY  NG  D+A+  +  ++ SG +PD I FV
Sbjct: 531 CKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFV 590

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VLTAC+H+GLV+ GL+   S++  HG+    DHY CIVD L R+GR  +AE +    P 
Sbjct: 591 SVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPY 650

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           K    LW  LL  CR+HG++ LA+R AE L  ++P++ A YV ++N Y+S
Sbjct: 651 KSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSS 700



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 210/400 (52%), Gaps = 25/400 (6%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
           G K   ++ N LLD+Y +CG+   A+ +FDEM  RDV S+N  ++   K G L +A  +F
Sbjct: 2   GMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVF 61

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
           D MP+RD  SW  MIS  VR     +AL +Y+ M   +  + ++FTL+SVLSA S +   
Sbjct: 62  DGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMV-CDGFLPSRFTLASVLSACSKVLDG 120

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI-NEARQIFDKMVDRDVVSWTAMIGR 234
             G   HG  ++TG D +  V +AL  MY KCG I +   ++F+ +   + VS+TA+IG 
Sbjct: 121 VFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGG 180

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA-----DHAAE----ELGKQVHGY 285
             +E +  E   +F  + + G++ ++   + +L+  A     D  +E    ELGKQ+H  
Sbjct: 181 LARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCL 240

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
             R+G+       ++L+ +Y+K  ++  ++ +F  MP  ++VSW  +I G+ Q    DK+
Sbjct: 241 ALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKS 300

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           +E+   +  SG QP+ +  + VL AC  +G V+ G + F SI +     + A        
Sbjct: 301 VEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNA-------- 352

Query: 406 LLARSGRFHEAEDVISKM------PMKPDKFLWASLLGGC 439
           +L+    +   E+ IS         +KPDK   + +L  C
Sbjct: 353 MLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSC 392



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 167/346 (48%), Gaps = 34/346 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+  Q   P  +  S ++  C + R LE GK++H  +  +       I + L+ +Y++C 
Sbjct: 372 QMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECE 431

Query: 76  NISDAQTLFDE-MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
            +  ++ +FD+ + E D+  +N+MISGF          N+ D                  
Sbjct: 432 KMEISECIFDDCINELDIACWNSMISGFR--------HNMLD------------------ 465

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                 +AL L+R M        N+ + ++VLS+ S +  L  G++ HG ++++G+ SD 
Sbjct: 466 -----TKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDS 520

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL+DMY KCG I+ ARQ FD ++ ++ V W  MI  Y   GR +E   L+ ++I S
Sbjct: 521 FVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISS 580

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVEN 313
           G +P+  TF  VL AC+     E G ++   M RI G +P       +V    + G +E+
Sbjct: 581 GEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLED 640

Query: 314 SKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++K+    P +   V W  L++    +G    A    E L++   Q
Sbjct: 641 AEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQ 686



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 186/433 (42%), Gaps = 79/433 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    +S++  C +      G + H     +G    +F+ N LL MYAKCG I D    
Sbjct: 102 PSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVD---- 157

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                      Y   +               F+ + Q +  S+TA+I G  R N+ +EA+
Sbjct: 158 -----------YGVRV---------------FESLSQPNEVSYTAVIGGLARENKVLEAV 191

Query: 144 DLYRMMQNFENSVS-NKFTLSSVLS---------AVSAIQCLRLGKEIHGYIMRTGFDSD 193
            ++R+M   E  V  +   LS++LS         ++S I    LGK+IH   +R GF  D
Sbjct: 192 QMFRLM--CEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGD 249

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             + ++L ++Y K   +N A  IF +M + +VVSW  MI  + QE R ++     + +  
Sbjct: 250 LHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRD 309

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           SG +PN  T   VL AC                                    + G+VE 
Sbjct: 310 SGFQPNEVTCISVLGACF-----------------------------------RSGDVET 334

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
            +++F+ +P+P + +W ++++GY+     ++A+  F  +     +PD      +L++C  
Sbjct: 335 GRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCAR 394

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
              ++ G Q  H +  +  ++  +   + ++ + +   +   +E +      + D   W 
Sbjct: 395 LRFLEGGKQ-IHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWN 453

Query: 434 SLLGGCRIHGNLD 446
           S++ G R H  LD
Sbjct: 454 SMISGFR-HNMLD 465



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 15/224 (6%)

Query: 18  LHQ--ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +HQ  +  P+ + +++++  C +  +L  G++ H  +  SG+    F+   L DMY KCG
Sbjct: 475 MHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCG 534

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMIS 131
            I  A+  FD +  ++   +N MI G+   G  ++A  L+ +M     + D  ++ ++++
Sbjct: 535 EIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLT 594

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-RLGK--EIHGYIMRT 188
                      L++   MQ              +   +  + CL R G+  +       T
Sbjct: 595 ACSHSGLVETGLEILSSMQRIHG------IEPELDHYICIVDCLGRAGRLEDAEKLAEAT 648

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
            + S  V+W  L       G ++ AR++ +K++  D  S  A +
Sbjct: 649 PYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYV 692


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 259/451 (57%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y  +++ C   R ++ G+++HS    +GF+  +++S  L+DMY+K G        
Sbjct: 343 PNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG-------- 394

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   LE+AR + + + ++D  SWT+MI+GYV++    +AL
Sbjct: 395 -----------------------WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ MQ       N   L+S +S  + I  +R G +IH  I  +G+  D  +W+AL ++
Sbjct: 432 AAFKEMQKCGIWPDN-IGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNL 490

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG I EA   F+++  +D ++W  ++  + Q G  EE   +F  + +SG++ N FTF
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L+A A+ A  + GKQ+H  + + G+   +   +AL+ +Y KCG+ E++K  F+ M  
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + VSW ++I   +Q+G   +AL+ F+ + K G +P+ + F+GVL AC+H GLV++GL Y
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+ +++G+    DHYAC++D+  R+G+   A+  I +MP+  D  +W +LL  C++H 
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHK 730

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           N+++ + AA+ L E+EP + A+YV ++N YA
Sbjct: 731 NIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 210/431 (48%), Gaps = 38/431 (8%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +  Q+      P+P + SS++  C +     +G+ +H+     GF   +F+ N +
Sbjct: 125 EEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAV 184

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y +CG                               S   A  +F +MP RD  ++ 
Sbjct: 185 ITLYLRCG-------------------------------SFRLAERVFCDMPHRDTVTFN 213

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            +ISG+ +      AL+++  MQ F     +  T+SS+L+A +++  L+ G ++H Y+ +
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQ-FSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK 272

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G  SD ++  +L D+Y KCG +  A  IF+     +VV W  M+  + Q     + F L
Sbjct: 273 AGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFEL 332

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F ++  +GIRPN FT+  +L  C      +LG+Q+H    + G++   + +  L+ MYSK
Sbjct: 333 FCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSK 392

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G +E +++V   +   D+VSWTS+IAGY Q+     AL  F+ + K G  PD+I     
Sbjct: 393 YGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASA 452

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           ++ C     + +GLQ  H+     G +     +  +V+L AR GR  EA     ++  K 
Sbjct: 453 ISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK- 510

Query: 428 DKFLWASLLGG 438
           D+  W  L+ G
Sbjct: 511 DEITWNGLVSG 521



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 7/345 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I  ++K G +  AR +F+E+  RDN SW AM+SGY +     EAL LYR M      
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHR-AGV 139

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V   + LSSVLS+ +  +    G+ IH    + GF S+  V +A+  +Y +CGS   A +
Sbjct: 140 VPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F  M  RD V++  +I  + Q G  E    +F E+  SG+ P+  T + +L ACA    
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + G Q+H Y+ + G         +L+ +Y KCG+VE +  +FN   R ++V W  ++  
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           + Q     K+ E F  +  +G +P+   +  +L  CT    +D G Q  HS+  K G  +
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSLSVKTG--F 376

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +D Y    ++D+ ++ G   +A  V+ +M  + D   W S++ G
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAG 420



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 155/325 (47%), Gaps = 14/325 (4%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +R   S    ++G++ +  P + L L      F +       L  +  A +   C   
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSL------FADKARQHGGLGPLDFACALRACRGN 54

Query: 178 GK------EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           G+      EIH   +  G     +V + L D+Y K G +  AR++F+++  RD VSW AM
Sbjct: 55  GRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAM 114

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +  Y Q G  EE   L+ ++ ++G+ P  +  + VL++C        G+ +H    + G+
Sbjct: 115 LSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF 174

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
               F  +A++ +Y +CG+   +++VF  MP  D V++ +LI+G+AQ G  + ALE FE 
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEE 234

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +  SG  PD +    +L AC   G + KG Q  HS   K G++        ++DL  + G
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQ-LHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 412 RFHEAEDVISKMPMKPDKFLWASLL 436
              E   VI     + +  LW  +L
Sbjct: 294 DV-ETALVIFNSSDRTNVVLWNLML 317


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/420 (37%), Positives = 248/420 (59%), Gaps = 31/420 (7%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LL  +   G +++A+ LFDEM ++DV +   M+SG+ + G + +AR LFDEMP+R+  SW
Sbjct: 149 LLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSW 208

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMISGY +  + I A  L+ +M +      N+ + +++L                GYI 
Sbjct: 209 TAMISGYAQNGKVILARKLFEVMPD-----RNEVSWTAMLV---------------GYIQ 248

Query: 187 RTGFDSDEVVWSALSDM-----------YGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
               +  E +++A+ D            +G+ G ++ A+ +F++M  RD  +W+AMI  Y
Sbjct: 249 AGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVY 308

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q     E  + F E++  GIRPN  +F  +L  CA  A  + G+++H  M R  +D   
Sbjct: 309 EQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDV 368

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           FA SAL+ MY KCGN++ +K+VFN     D+V W S+I GYAQ+G+ ++AL  F+ L  +
Sbjct: 369 FAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLA 428

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
              PD I ++GVLTAC++ G V +G + F+S+     +   A HY+C+VDLL R+G   E
Sbjct: 429 RMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDE 488

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A D+I+ MP++PD  +W +L+G CR+H N ++A+ AA+ L E+EP +   YV +++IY S
Sbjct: 489 ALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTS 548



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 186/426 (43%), Gaps = 60/426 (14%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           S   P V  +N  +    + GNI  A+  FD M  R   SYN +I+G+ +    + A  L
Sbjct: 11  SSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGL 70

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F  MP RD  S+ A+I+G          L L R      ++ +   ++    S VS    
Sbjct: 71  FHRMPSRDLGSYNALIAG----------LSLRR--HTLPDAAAALASIPLPPSVVSFTSL 118

Query: 175 LRLGKEIHGY------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
           LR G   HG       +     + + V ++ L   +   G +NEAR++FD+M D+DVV+ 
Sbjct: 119 LR-GYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVAR 177

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           TAM+  Y Q GR  E  ALF E+ K     N  ++  +++  A +    L +++   M  
Sbjct: 178 TAMLSGYCQAGRITEARALFDEMPKR----NVVSWTAMISGYAQNGKVILARKLFEVMP- 232

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD----- 343
              D    + +A++  Y + G+VE+++ +FN MP   + +  +++ G+ Q+GM D     
Sbjct: 233 ---DRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAM 289

Query: 344 --------------------------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
                                     +AL  F  +L  G +P++  F+ +LT C      
Sbjct: 290 FERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATA 349

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           D G +  H+   +          + ++ +  + G   +A+ V +    K D  +W S++ 
Sbjct: 350 DYGRE-LHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPK-DVVMWNSMIT 407

Query: 438 GCRIHG 443
           G   HG
Sbjct: 408 GYAQHG 413


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 255/470 (54%), Gaps = 38/470 (8%)

Query: 43  EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102
           E GK++H      GF   + ++N LL++YAK  +++ A+ +F EM E +V S+N MI GF
Sbjct: 266 ELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGF 325

Query: 103 T-----------------------------------KGGSLEQARNLFDEMPQRDNFSWT 127
                                               + G +E  R +F  +PQ    +W 
Sbjct: 326 GQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWN 385

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AM+SGY  Y    EA+  +R MQ F+N   +K TLS +LS+ + ++ L  GK+IHG ++R
Sbjct: 386 AMLSGYSNYEHYEEAISNFRQMQ-FQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIR 444

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFA 246
           T    +  + S L  +Y +C  +  +  IFD  ++  D+  W +MI  +       +   
Sbjct: 445 TEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALI 504

Query: 247 LFSELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           LF  + ++ +  PN  +FA VL++C+   +   G+Q HG + + GY   SF  +AL  MY
Sbjct: 505 LFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMY 564

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCG ++++++ F+ + R + V W  +I GY  NG  D+A+  +  ++ SG +PD I FV
Sbjct: 565 CKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFV 624

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VLTAC+H+GLV+ GL+   S++  HG+    DHY CIVD L R+GR  +AE +    P 
Sbjct: 625 SVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPY 684

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           K    LW  LL  CR+HG++ LA+R AE L  ++P++ A YV ++N Y+S
Sbjct: 685 KSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSS 734



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 222/426 (52%), Gaps = 25/426 (5%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +SL++  R  R    GK +H  +   G K   ++ N LLD+Y +CG+   A+ +FDEM  
Sbjct: 10  ASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSV 69

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           RDV S+N  ++   K G L +A  +FD MP+RD  SW  MIS  VR     +AL +Y+ M
Sbjct: 70  RDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRM 129

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
              +  + ++FTL+SVLSA S +     G   HG  ++TG D +  V +AL  MY KCG 
Sbjct: 130 V-CDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGF 188

Query: 210 I-NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           I +   ++F+ +   + VS+TA+IG   +E +  E   +F  + + G++ ++   + +L+
Sbjct: 189 IVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILS 248

Query: 269 ACA-----DHAAE----ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             A     D  +E    ELGKQ+H    R+G+       ++L+ +Y+K  ++  ++ +F 
Sbjct: 249 ISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFA 308

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            MP  ++VSW  +I G+ Q    DK++E+   +  SG QP+ +  + VL AC  +G V+ 
Sbjct: 309 EMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVET 368

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM------PMKPDKFLWA 433
           G + F SI +     + A        +L+    +   E+ IS         +KPDK   +
Sbjct: 369 GRRIFSSIPQPSVSAWNA--------MLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLS 420

Query: 434 SLLGGC 439
            +L  C
Sbjct: 421 VILSSC 426



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 167/346 (48%), Gaps = 34/346 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+  Q   P  +  S ++  C + R LE GK++H  +  +       I + L+ +Y++C 
Sbjct: 406 QMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECE 465

Query: 76  NISDAQTLFDE-MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
            +  ++ +FD+ + E D+  +N+MISGF          N+ D                  
Sbjct: 466 KMEISECIFDDCINELDIACWNSMISGFR--------HNMLD------------------ 499

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                 +AL L+R M        N+ + ++VLS+ S +  L  G++ HG ++++G+ SD 
Sbjct: 500 -----TKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDS 554

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL+DMY KCG I+ ARQ FD ++ ++ V W  MI  Y   GR +E   L+ ++I S
Sbjct: 555 FVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISS 614

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVEN 313
           G +P+  TF  VL AC+     E G ++   M RI G +P       +V    + G +E+
Sbjct: 615 GEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLED 674

Query: 314 SKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++K+    P +   V W  L++    +G    A    E L++   Q
Sbjct: 675 AEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQ 720



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 121/244 (49%), Gaps = 33/244 (13%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC---------- 207
           NK+ L+S+L      +C   GK IHG+I+R G  SD  + + L D+Y +C          
Sbjct: 6   NKY-LASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVF 64

Query: 208 ---------------------GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
                                G + EA ++FD M +RDVVSW  MI    ++G  E+   
Sbjct: 65  DEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALV 124

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           ++  ++  G  P+ FT A VL+AC+       G + HG   + G D   F  +AL+ MY+
Sbjct: 125 VYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYA 184

Query: 307 KCG-NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           KCG  V+   +VF  + +P+ VS+T++I G A+     +A++ F L+ + G Q D +   
Sbjct: 185 KCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLS 244

Query: 366 GVLT 369
            +L+
Sbjct: 245 NILS 248



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 15/224 (6%)

Query: 18  LHQ--ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +HQ  +  P+ + +++++  C +  +L  G++ H  +  SG+    F+   L DMY KCG
Sbjct: 509 MHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCG 568

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMIS 131
            I  A+  FD +  ++   +N MI G+   G  ++A  L+ +M     + D  ++ ++++
Sbjct: 569 EIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLT 628

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-RLGK--EIHGYIMRT 188
                      L++   MQ              +   +  + CL R G+  +       T
Sbjct: 629 ACSHSGLVETGLEILSSMQRIHG------IEPELDHYICIVDCLGRAGRLEDAEKLAEAT 682

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
            + S  V+W  L       G ++ AR++ +K++  D  S  A +
Sbjct: 683 PYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYV 726


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 237/435 (54%), Gaps = 32/435 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  GK +H+     GF    ++ N L  MY+KC        LF +M   DV         
Sbjct: 268 LHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDV--------- 318

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
                                  SWT +I  YV+      ALD ++ M+  + S  N++T
Sbjct: 319 ----------------------VSWTNLIMTYVQMGDEERALDAFKRMRKSDVS-PNEYT 355

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
            +SV+SA + +   + G++IHG+ +R G      V +++  +Y KCG + EA  +FD M 
Sbjct: 356 FASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMT 415

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            +D++SW+ +I  Y Q    +E F   S + + G +PN F  A VL+ C   A  E GKQ
Sbjct: 416 RKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQ 475

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH Y   IG D  +   SAL+ MYS+ GN++ + K+F+ +   D+VSWT++I GYA++G 
Sbjct: 476 VHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGY 535

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             +A+  FE +   G  PD++ F+G+LTAC HAGLVD G  Y+  +  ++ +  + +HY 
Sbjct: 536 SQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYG 595

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           CI+DLL R+GR  EAE ++  MP   D  +W++LL  CR HG+LD A  AAE +  + P 
Sbjct: 596 CIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPN 655

Query: 462 NPATYVTMANIYASA 476
           +   ++T+ANIY+++
Sbjct: 656 SAGAHITLANIYSAS 670



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 202/431 (46%), Gaps = 40/431 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           + S  ++ C     +  G+ +H     SG    VF+S+ L+DMY K G            
Sbjct: 153 VVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKT---------- 202

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                                EQ  ++F+ M  R+  SWTA+I G V     ++ L  + 
Sbjct: 203 ---------------------EQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFS 241

Query: 148 MMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
            M  + + V  +  T +  L A +    L  GK IH   ++ GF+    V + L  MY K
Sbjct: 242 EM--WRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSK 299

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           C   +   ++F KM   DVVSWT +I  Y Q G  E     F  + KS + PN +TFA V
Sbjct: 300 CRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASV 359

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++ACA+ A  + G+Q+HG+  R+G       +++++ +YSKCG ++ +  VF+GM R D+
Sbjct: 360 ISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDI 419

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SW+++I+ Y Q     +A  Y   + + G +P+      VL+ C    L++ G Q  H+
Sbjct: 420 ISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQ-VHA 478

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
                GL +    ++ ++ + +RSG   EA  +   +    D   W +++ G   HG   
Sbjct: 479 YALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIK-NNDIVSWTAMINGYAEHG--- 534

Query: 447 LAKRAAEALFE 457
              + A +LFE
Sbjct: 535 -YSQEAISLFE 544



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 174/341 (51%), Gaps = 2/341 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+ +    K G + +AR++F++M  RD  SWT +I+GYV      EAL L+  M      
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             ++F +S  L A +    +  G+ +HG+ +++G  +   V SAL DMY K G   +   
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCS 207

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+ M  R+VVSWTA+I      G   +G + FSE+ +S +  ++ TFA  L A A+   
Sbjct: 208 VFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGL 267

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              GK +H    + G++  ++  + L  MYSKC   +   ++F  M  PD+VSWT+LI  
Sbjct: 268 LHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMT 327

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q G  ++AL+ F+ + KS   P+   F  V++AC +  +   G Q  H    + GL  
Sbjct: 328 YVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQ-IHGHALRLGLVD 386

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                  I+ L ++ G   EA  V   M  K D   W++++
Sbjct: 387 ALSVSNSIITLYSKCGLLQEASLVFDGMTRK-DIISWSTII 426



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 27/270 (10%)

Query: 2   IDILCNQRRLKEALQILHQISH--PSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I + C     KEA   L  +S   P P+ ++  S++  C     LE GK+VH++    G 
Sbjct: 426 ISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGL 485

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
                + + L+ MY++ GN+ +A  +FD ++  D+ S+  MI+G+ + G  ++A +LF  
Sbjct: 486 DHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLF-- 543

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEA------LDL----YRMMQNFENSVSNKFTLSSVLS 167
               +N S   ++  YV +   + A      +DL    Y++M N      +K     ++ 
Sbjct: 544 ----ENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIID 599

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
            +   +  RL +  H  +    F  D+VVWS L       G ++ A    ++M+     S
Sbjct: 600 LLC--RAGRLSEAEH-MVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNS 656

Query: 228 WTAMI---GRYFQEGRREEGFALFSELIKS 254
             A I     Y   GRREE  A   +L+KS
Sbjct: 657 AGAHITLANIYSASGRREEA-AHVRKLMKS 685


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 160/527 (30%), Positives = 277/527 (52%), Gaps = 100/527 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC--------- 74
           P    ++S ++ C   R+ + GK+VHS L + GFK   F+ N L+DMYAKC         
Sbjct: 173 PDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKV 232

Query: 75  ----------------------GNISDAQTLFDEMQE----------------------- 89
                                 G+ +DA  LF  MQE                       
Sbjct: 233 FDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQR 292

Query: 90  ------------------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
                             +++     ++  +++ G L  A+ +F+ M +R+ +SW +MI 
Sbjct: 293 NDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIE 352

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           GY +  +  EAL L++ MQ       + F+LSS+LS+  ++   + G+E+H +I+R   +
Sbjct: 353 GYQQNGETQEALRLFKQMQ-LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 411

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFS 249
            + ++   L DMY KCGS++ A +++D+ +  DR+   W +++  Y  +G ++E F  F 
Sbjct: 412 EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFL 471

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           E+++S I  +  T   ++N                              +ALV MYSKCG
Sbjct: 472 EMLESDIEYDVLTMVTIVNLLV-------------------------LETALVDMYSKCG 506

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            +  ++ VF+ M   ++VSW ++I+GY+++G   +AL  +E + K G  P+ + F+ +L+
Sbjct: 507 AITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 566

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H GLV++GL+ F S++E + +   A+HY C+VDLL R+GR  +A++ + KMP++P+ 
Sbjct: 567 ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 626

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             W +LLG CR+H ++D+ + AA+ LFE++P+NP  YV M+NIYA+A
Sbjct: 627 STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAA 673



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 219/456 (48%), Gaps = 39/456 (8%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           S  +P  YSSLIQ C  + + + GK +H+ + S+G+ P  ++   +L +YA+ G + D  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDD-- 124

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                     L  AR LF+EMP+R+  +W  MI  Y R +  +E
Sbjct: 125 --------------------------LCYARKLFEEMPERNLTAWNTMILAYARVDDYME 158

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A  ++  M        + FT +S L    A++    GK++H  ++  GF  D  V +AL 
Sbjct: 159 AWGIFDRMLKI-GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALI 217

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPN 259
           DMY KC       ++FD+M +R+ V+W ++I    Q G   +   LF  + +S  GI+P+
Sbjct: 218 DMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPD 277

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            FTF  +L  CA+   +  G+Q+H ++ R          + LVHMYS+CG +  +K++FN
Sbjct: 278 QFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFN 337

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   +  SW S+I GY QNG   +AL  F+ +  +G +PD      +L++C       K
Sbjct: 338 RMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQK 397

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK--FLWASLLG 437
           G +  H+   ++ +         +VD+ A+ G    A  V  +  +K D+   LW S+L 
Sbjct: 398 GRE-LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ-TIKKDRNTALWNSILA 455

Query: 438 GCRIHGNLDLAKRAAEALFE-IEPENPATYVTMANI 472
           G   + N  L K +     E +E +     +TM  I
Sbjct: 456 G---YANKGLKKESFNHFLEMLESDIEYDVLTMVTI 488



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 192/459 (41%), Gaps = 99/459 (21%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    +++L+  C   R   +G+++H+HL  +     + +   L+ MY++CG ++ A+ 
Sbjct: 275 QPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKE 334

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQ 138
           +F+ M ER+  S+N+MI G+ + G  ++A  LF +M     + D FS ++M+S  V  + 
Sbjct: 335 IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSD 394

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW- 197
             +  +L+  +    N++  +  L  VL  + A +C  +      Y      D +  +W 
Sbjct: 395 SQKGRELHNFI--VRNTMEEEGILQVVLVDMYA-KCGSMDYAWKVYDQTIKKDRNTALWN 451

Query: 198 --------------------------------------------SALSDMYGKCGSINEA 213
                                                       +AL DMY KCG+I +A
Sbjct: 452 SILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKA 511

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           R +FD M  +++VSW AMI  Y + G  +E   L+ E+ K G+ PN  TF  +L+AC+  
Sbjct: 512 RTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHT 571

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASA-----LVHMYSKCGNVENSKKVFNGMP-RPDLV 327
              E G ++   M     + Y+  A A     +V +  + G +E++K+    MP  P++ 
Sbjct: 572 GLVEEGLRIFTSMQ----EDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVS 627

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           +W +L                                   L AC     +D G      +
Sbjct: 628 TWGAL-----------------------------------LGACRVHKDMDMGRLAAQRL 652

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            E          Y  + ++ A +GR+ E ED+   M MK
Sbjct: 653 FELD--PQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMK 689



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 134/308 (43%), Gaps = 85/308 (27%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF-----IS 64
           RL  A +I ++++  +   ++S+I+  +QN   +E  ++   ++ +G KP  F     +S
Sbjct: 328 RLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLS 387

Query: 65  NC------------------------------LLDMYAKCGNISDAQTLFDEM--QERDV 92
           +C                              L+DMYAKCG++  A  ++D+   ++R+ 
Sbjct: 388 SCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNT 447

Query: 93  CSYNTMISG---------------------------------------------FTKGGS 107
             +N++++G                                             ++K G+
Sbjct: 448 ALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGA 507

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           + +AR +FD M  ++  SW AMISGY ++    EAL LY  M   +    N+ T  ++LS
Sbjct: 508 ITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPK-KGMYPNEVTFLAILS 566

Query: 168 AVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDV 225
           A S    +  G  I   +      ++    ++ + D+ G+ G + +A++  +KM ++ +V
Sbjct: 567 ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 626

Query: 226 VSWTAMIG 233
            +W A++G
Sbjct: 627 STWGALLG 634


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 245/474 (51%), Gaps = 63/474 (13%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L + C +   +  G+K+H H    GF+  +F+SN L+ MYA CG +              
Sbjct: 122 LFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQL-------------- 167

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                    GF        A+ +FD M  RD  SW  +I GY +YN+  E L L+  M  
Sbjct: 168 ---------GF--------AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAM-T 209

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG------ 205
             N  ++  T+  ++ A S +        +  YI     + D  + + L DMYG      
Sbjct: 210 AANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAE 269

Query: 206 -------------------------KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                                    K G++  AR++FD M  RDV+SWT+MI  Y Q  +
Sbjct: 270 LAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQ 329

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             +   LF E++ + ++P+  T A VL+ACA     ++G  VH Y+ R G     +  ++
Sbjct: 330 FSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNS 389

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY KCG VE + +VF+ M   D VSWTS+I+G A NG  + AL+ F  +L+ G QP 
Sbjct: 390 LIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPT 449

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           H  FVG+L AC HAGLV+KGL+YF S++  HGL     HY C+VDLL+RSG   +A + I
Sbjct: 450 HGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFI 509

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            KMP+ PD  +W  LL  C++HGN+ LA+ A + L E++P +   YV ++N YA
Sbjct: 510 KKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYA 563



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 182/370 (49%), Gaps = 38/370 (10%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
           +L +A  +F+++       W  MI G  + + P+EA+ +Y  M + +    N  TL  + 
Sbjct: 65  NLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHH-QGITGNNLTLIFLF 123

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
            A + +  +  G++IH + ++ GF+S   V +AL  MY  CG +  A+++FD M+DRD+V
Sbjct: 124 KACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLV 183

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SW  +I  Y Q  + +E   LF  +  + I+ +A T   ++ AC+     E    +  Y+
Sbjct: 184 SWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYI 243

Query: 287 TRIGYDPYSFAASALVHMY-------------------------------SKCGNVENSK 315
                +   +  + L+ MY                               +K GN+  ++
Sbjct: 244 KENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAAR 303

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           K+F+ MP+ D++SWTS+I GY+Q      A++ F+ ++ +  +PD +    VL+AC H G
Sbjct: 304 KLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 363

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            +D G    H I+ +HG+   AD Y    ++D+  + G   +A +V  +M  K D   W 
Sbjct: 364 KLDVGWAVHHYIR-RHGV--QADIYVGNSLIDMYCKCGMVEKALEVFHRMKDK-DSVSWT 419

Query: 434 SLLGGCRIHG 443
           S++ G  ++G
Sbjct: 420 SVISGLAVNG 429



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGS-INEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           KE+H +++RT   +D  + S +   Y    + +++A  +F+++    +V W  MI    Q
Sbjct: 34  KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
                E   +++ +   GI  N  T   +  ACA  +    G+++H +  ++G++ Y F 
Sbjct: 94  SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFV 153

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           ++AL+HMY+ CG +  ++K+F+GM   DLVSW +LI GY+Q     + L  F+ +  +  
Sbjct: 154 SNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANI 213

Query: 358 QPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGR 412
           + D +  V ++ AC+H G     D  ++Y   IKE +      D Y    ++D+  R   
Sbjct: 214 KADAVTMVKIILACSHLGDWEFADSMVKY---IKENN---LEIDVYLGNTLIDMYGRRSL 267

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA-TYVTMAN 471
              A+ V  +M  + +   W +L+ G    GNL     AA  LF+  P+    ++ +M  
Sbjct: 268 AELAQGVFDRMRER-NIVSWNALVMGHAKVGNL----TAARKLFDNMPKRDVISWTSMIT 322

Query: 472 IYASA 476
            Y+ A
Sbjct: 323 GYSQA 327



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S++  C     L+ G  VH +++  G +  +++ N L+DMY KCG +  A  +
Sbjct: 347 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 406

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           F  M+++D  S+ ++ISG    G    A +LF +M
Sbjct: 407 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQM 441


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 259/451 (57%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y  +++ C   R ++ G+++HS    +GF+  +++S  L+DMY+K G        
Sbjct: 343 PNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG-------- 394

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   LE+AR + + + ++D  SWT+MI+GYV++    +AL
Sbjct: 395 -----------------------WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ MQ       N   L+S +S  + I  +R G +IH  I  +G+  D  +W+AL ++
Sbjct: 432 AAFKEMQKCGIWPDN-IGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNL 490

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG I EA   F+++  +D ++W  ++  + Q G  EE   +F  + +SG++ N FTF
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L+A A+ A  + GKQ+H  + + G+   +   +AL+ +Y KCG+ E++K  F+ M  
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + VSW ++I   +Q+G   +AL+ F+ + K G +P+ + F+GVL AC+H GLV++GL Y
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+ +++G+    DHYAC++D+  R+G+   A+  I +MP+  D  +W +LL  C++H 
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHK 730

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           N+++ + AA+ L E+EP + A+YV ++N YA
Sbjct: 731 NIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 210/431 (48%), Gaps = 38/431 (8%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +  Q+      P+P + SS++  C +     +G+ +H+     GF   +F+ N +
Sbjct: 125 EEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAV 184

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y +CG                               S   A  +F +MP RD  ++ 
Sbjct: 185 ITLYLRCG-------------------------------SFRLAERVFCDMPHRDTVTFN 213

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            +ISG+ +      AL+++  MQ F     +  T+SS+L+A +++  L+ G ++H Y+ +
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQ-FSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK 272

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G  SD ++  +L D+Y KCG +  A  IF+     +VV W  M+  + Q     + F L
Sbjct: 273 AGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFEL 332

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F ++  +GIRPN FT+  +L  C      +LG+Q+H    + G++   + +  L+ MYSK
Sbjct: 333 FCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSK 392

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G +E +++V   +   D+VSWTS+IAGY Q+     AL  F+ + K G  PD+I     
Sbjct: 393 YGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASA 452

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           ++ C     + +GLQ  H+     G +     +  +V+L AR GR  EA     ++  K 
Sbjct: 453 ISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK- 510

Query: 428 DKFLWASLLGG 438
           D+  W  L+ G
Sbjct: 511 DEITWNGLVSG 521



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 7/345 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I  ++K G +  AR +F+E+  RDN SW AM+SGY +     EAL LYR M      
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHR-AGV 139

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V   + LSSVLS+ +  +    G+ IH    + GF S+  V +A+  +Y +CGS   A +
Sbjct: 140 VPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F  M  RD V++  +I  + Q G  E    +F E+  SG+ P+  T + +L ACA    
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + G Q+H Y+ + G         +L+ +Y KCG+VE +  +FN   R ++V W  ++  
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           + Q     K+ E F  +  +G +P+   +  +L  CT    +D G Q  HS+  K G  +
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSLSVKTG--F 376

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +D Y    ++D+ ++ G   +A  V+ +M  + D   W S++ G
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAG 420



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 155/325 (47%), Gaps = 14/325 (4%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +R   S    ++G++ +  P + L L      F +       L  +  A +   C   
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSL------FADKARQHGGLGPLDFACALRACRGN 54

Query: 178 GK------EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           G+      EIH   +  G     +V + L D+Y K G +  AR++F+++  RD VSW AM
Sbjct: 55  GRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAM 114

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +  Y Q G  EE   L+ ++ ++G+ P  +  + VL++C        G+ +H    + G+
Sbjct: 115 LSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF 174

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
               F  +A++ +Y +CG+   +++VF  MP  D V++ +LI+G+AQ G  + ALE FE 
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEE 234

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +  SG  PD +    +L AC   G + KG Q  HS   K G++        ++DL  + G
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQ-LHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 412 RFHEAEDVISKMPMKPDKFLWASLL 436
              E   VI     + +  LW  +L
Sbjct: 294 DV-ETALVIFNSSDRTNVVLWNLML 317


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 270/470 (57%), Gaps = 16/470 (3%)

Query: 8   QRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           ++ L +A   L  I  P PS+  ++SL++   ++  L +  ++   +          +  
Sbjct: 93  RQTLPDAAAALASIPFP-PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LLD     G +++A+ LFDEM +RDV ++  M+SG+ + G + +AR LFDEMP+R+  S
Sbjct: 152 GLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WTAMISGY +  +   A  L+ +M        N+ + +++L  V  IQ   +  E    +
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPE-----RNEVSWTAML--VGYIQAGHV--EDAAEL 258

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
                +      +A+   +G+ G ++ A+ +F+KM +RD  +W+AMI  Y Q     E  
Sbjct: 259 FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           + F E++  G+RPN  +   +L  CA  A  + G++VH  M R  +D   FA SAL+ MY
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMY 378

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCGN++ +K+VF+     D+V W S+I GYAQ+G+ ++AL  F  +  +G  PD I ++
Sbjct: 379 IKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYI 438

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G LTAC++ G V +G + F+S+     +   A+HY+C+VDLL RSG   EA D+I  MP+
Sbjct: 439 GALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV 498

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +PD  +W +L+G CR+H N ++A+ AA+ L E+EP N   YV +++IY S
Sbjct: 499 EPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTS 548



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 184/416 (44%), Gaps = 60/416 (14%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N  +   A+ GNI  A+  F+ M  R   SYN +++G+ +    + A  LF  MP RD  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           S+ A+ISG          L L R  Q   ++ +   ++    S VS    LR G   HG 
Sbjct: 81  SYNALISG----------LSLRR--QTLPDAAAALASIPFPPSVVSFTSLLR-GYVRHGL 127

Query: 185 ------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
                 + +   + + V ++ L       G +NEAR++FD+M DRDVV+WTAM+  Y Q 
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           GR  E  ALF E+ K     N  ++  +++  A +    L +++   M     +    + 
Sbjct: 188 GRITEARALFDEMPKR----NVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSW 239

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD--------------- 343
           +A++  Y + G+VE++ ++FN MP   + +  +++ G+ Q GM D               
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 344 ----------------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
                           +AL  F  +L  G +P++   + +LT C    ++D G +  H+ 
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE-VHAA 358

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +          + ++ +  + G   +A+ V      K D  +W S++ G   HG
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG 413


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 177/508 (34%), Positives = 261/508 (51%), Gaps = 47/508 (9%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV----F 62
           N R L EA  I  QI  P  S+Y+ ++    QN  L E   +   +    FK  V     
Sbjct: 67  NNRSLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIP---FKDVVSWNSI 123

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEM---------------------------------QE 89
           I  CL      CG+I  A+ LFDEM                                  +
Sbjct: 124 IKGCL-----HCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMD 178

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           RDV ++N MI G+   G ++ A  LF +MP RD  SW++MI+G     +  +AL L+R M
Sbjct: 179 RDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDM 238

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCG 208
                 +S+   L   LSA + I   R+G +IH  + + G +  DE V ++L   Y  C 
Sbjct: 239 VASGVCLSSG-VLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCK 297

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  A ++F ++V + VV WTA++  Y    +  E   +F E+++  + PN  +F   LN
Sbjct: 298 QMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALN 357

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +C      E GK +H    ++G +   +   +LV MYSKCG V ++  VF G+   ++VS
Sbjct: 358 SCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVS 417

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W S+I G AQ+G    AL  F  +L+ G  PD I   G+L+AC+H+G++ K   +F    
Sbjct: 418 WNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFG 477

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           +K  +T T +HY  +VD+L R G   EAE V+  MPMK +  +W +LL  CR H NLDLA
Sbjct: 478 QKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLA 537

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           KRAA  +FEIEP+  A YV ++N+YAS+
Sbjct: 538 KRAANQIFEIEPDCSAAYVLLSNLYASS 565


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 274/477 (57%), Gaps = 5/477 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      + EAL+I       +  +++ ++    Q   L +   +   + ++G +P  
Sbjct: 286 LDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNE 345

Query: 62  FISNCLLDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F   CLL      G I+  + +         E D+     +I  ++K G L++AR + + 
Sbjct: 346 FTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEV 405

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  +D  SWT+MI+GYV++    EAL+ ++ MQ F     N   L+S +SA + I+ +R 
Sbjct: 406 LEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDN-IGLASAISACAGIKAMRQ 464

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++IH  +  +G+ +D  +W+AL ++Y +CG   EA  +F+ +  +D ++W  M+  + Q
Sbjct: 465 GQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQ 524

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  EE   +F ++ ++G++ N FTF   ++A A+ A  + GKQ+H  + + G    +  
Sbjct: 525 SGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEV 584

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+AL+ +Y KCG++E++K  F  M   + VSW ++I   +Q+G   +AL+ F+ + + G 
Sbjct: 585 ANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGL 644

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P+ + F+GVL AC+H GLV++GL YF S+  +HG+    DHYAC+VD+L R+G+   A 
Sbjct: 645 KPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRAR 704

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
             + +MP+  +  +W +LL  CR+H N+++ + AA+ L E+EP + A+YV ++N YA
Sbjct: 705 KFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYA 761



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 221/441 (50%), Gaps = 7/441 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+   +  ++ A ++  Q+S      + +++    +N   EE   ++  +  SG  P  
Sbjct: 84  IDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTP 143

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY----NTMISGFTKGGSLEQARNLFDE 117
           ++ + +L    K       + +  ++ ++  CS     N +I+ + + GSL  A  +F E
Sbjct: 144 YVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSE 203

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP  D  ++  +IS + +      AL+++  M+       +  T++S+L+A ++I  L  
Sbjct: 204 MPYCDRVTFNTLISRHAQCGNGESALEIFEEMR-LSGWTPDCVTIASLLAACASIGDLNK 262

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK++H Y+++ G   D ++  +L D+Y KCG I EA +IF      +VV W  M+  Y Q
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ 322

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
                + F LF +++ +G+RPN FT+  +L  C       LG+Q+H    + G++   + 
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYV 382

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           +  L+ MYSK G ++ ++++   +   D+VSWTS+IAGY Q+    +ALE F+ +   G 
Sbjct: 383 SGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGI 442

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD+I     ++AC     + +G Q  HS     G +     +  +V+L AR GR  EA 
Sbjct: 443 WPDNIGLASAISACAGIKAMRQG-QQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAF 501

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            +   +  K DK  W  ++ G
Sbjct: 502 SLFEAIEHK-DKITWNGMVSG 521



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 191/374 (51%), Gaps = 15/374 (4%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I  + K G +++AR +F+++  RDN SW AM+SGY R     EA+ LY  M +    
Sbjct: 81  NLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM-HCSGV 139

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V   + LSSVLSA +       G+ +H  + + G  S+ VV +AL  +Y + GS++ A +
Sbjct: 140 VPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAER 199

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F +M   D V++  +I R+ Q G  E    +F E+  SG  P+  T A +L ACA    
Sbjct: 200 VFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGD 259

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              GKQ+H Y+ + G  P      +L+ +Y KCG +  + ++F    R ++V W  ++  
Sbjct: 260 LNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVA 319

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q     K+ + F  ++ +G +P+   +  +L  CT+AG ++ G Q  H +  K G  +
Sbjct: 320 YGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ-IHLLSIKTG--F 376

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
            +D Y    ++D+ ++ G   +A  ++  +  K D   W S++ G   H   +  K A E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGYVQH---EFCKEALE 432

Query: 454 A-----LFEIEPEN 462
                 LF I P+N
Sbjct: 433 TFKDMQLFGIWPDN 446



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 14/325 (4%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC--- 174
           M +R   S    ++G++ +  P + L L      F   V     L SV  A +  +C   
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSL------FAAKVRQCRGLGSVDFACALRECRGS 54

Query: 175 ---LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
                L   IH   +  G   D +  + L D+Y K G +  AR++F+++  RD VSW AM
Sbjct: 55  VKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAM 114

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +  Y + G  EE   L+ ++  SG+ P  +  + VL+AC   A  E G+ VH  + + G 
Sbjct: 115 LSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGS 174

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
              +   +AL+ +Y + G++  +++VF+ MP  D V++ +LI+ +AQ G  + ALE FE 
Sbjct: 175 CSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEE 234

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +  SG  PD +    +L AC   G ++KG Q  HS   K G++        ++DL  + G
Sbjct: 235 MRLSGWTPDCVTIASLLAACASIGDLNKGKQ-LHSYLLKAGMSPDYIIEGSLLDLYVKCG 293

Query: 412 RFHEAEDVISKMPMKPDKFLWASLL 436
              EA ++  K   + +  LW  +L
Sbjct: 294 VIVEALEIF-KSGDRTNVVLWNLML 317


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 255/454 (56%), Gaps = 33/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +SSL+    +   LE  K++H ++        +F+++ L+D Y KC  +S AQ  
Sbjct: 338 PDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQ-- 395

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                        N+F +    D   +TAMISGY+     I++L
Sbjct: 396 -----------------------------NIFSQCNSVDVVVFTAMISGYLHNGLYIDSL 426

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +++R +   + S  N+ TL S+L  +  +  L+LG+E+HG+I++ GFD+   +  A+ DM
Sbjct: 427 EMFRWLVKVKIS-PNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDM 485

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +N A +IF+++  RD+VSW +MI R  Q         +F ++  SGI  +  + 
Sbjct: 486 YAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSI 545

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +  L+ACA+  +E  GK +HG+M +       ++ S L+ MY+KCGN++ +  VF  M  
Sbjct: 546 SAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605

Query: 324 PDLVSWTSLIAGYAQNG-MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
            ++VSW S+IA    +G + D    + E++ KSG +PD I F+ ++++C H G VD+G++
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +F S+ E +G+    +HYAC+VDL  R+GR  EA + +  MP  PD  +W +LLG CR+H
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLH 725

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++LA+ A+  L +++P N   YV ++N +A+A
Sbjct: 726 KNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 759



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/428 (29%), Positives = 198/428 (46%), Gaps = 35/428 (8%)

Query: 18  LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
           + QIS P+   +  ++  C     ++ G ++H  +  SG      I N LL MY+KCG  
Sbjct: 232 MDQIS-PNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRF 290

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
            DA  LF  M   D  ++N MISG+ + G +E++   F E           MIS  V   
Sbjct: 291 DDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYE-----------MISSGV--- 336

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
                             + +  T SS+L +VS  + L   K+IH YIMR     D  + 
Sbjct: 337 ------------------LPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLT 378

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           SAL D Y KC  ++ A+ IF +    DVV +TAMI  Y   G   +   +F  L+K  I 
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKIS 438

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           PN  T   +L       A +LG+++HG++ + G+D       A++ MY+KCG +  + ++
Sbjct: 439 PNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 498

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F  + + D+VSW S+I   AQ+  P  A++ F  +  SG   D +     L+AC +    
Sbjct: 499 FERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSE 558

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             G +  H    KH L       + ++D+ A+ G    A +V   M  K +   W S++ 
Sbjct: 559 SFG-KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEK-NIVSWNSIIA 616

Query: 438 GCRIHGNL 445
            C  HG L
Sbjct: 617 ACGNHGKL 624



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 198/424 (46%), Gaps = 17/424 (4%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P  SI SS ++    N  L +    +  +   G  P V    CL+       N      
Sbjct: 104 RPWNSIISSFVR----NGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF 159

Query: 83  LFDEMQERDV-CS---YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR--- 135
           L D +    + C+    +++I  + + G ++    LFD + Q+D   W  M++GY +   
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGA 219

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            +  I+   + RM Q   N+V    T   VLS  ++   + LG ++HG ++ +G D +  
Sbjct: 220 LDSVIKGFSVMRMDQISPNAV----TFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS 275

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + ++L  MY KCG  ++A ++F  M   D V+W  MI  Y Q G  EE    F E+I SG
Sbjct: 276 IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG 335

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           + P+A TF+ +L + +     E  KQ+H Y+ R       F  SAL+  Y KC  V  ++
Sbjct: 336 VLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQ 395

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            +F+     D+V +T++I+GY  NG+   +LE F  L+K    P+ I  V +L       
Sbjct: 396 NIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILL 455

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            +  G +  H    K G     +    ++D+ A+ GR + A ++  ++  K D   W S+
Sbjct: 456 ALKLGRE-LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSM 513

Query: 436 LGGC 439
           +  C
Sbjct: 514 ITRC 517



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 166/349 (47%), Gaps = 34/349 (9%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           P   S L+Q C     L +GK+VH+ L  +      +    +L MYA CG+ SD   +F 
Sbjct: 35  PRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFY 94

Query: 86  EMQER--DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            +  R   +  +N++IS F + G L QA   + +M     F  +  +S +    +   AL
Sbjct: 95  RLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKML---CFGVSPDVSTFPCLVKACVAL 151

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ +    ++VS+                              G D +E V S+L   
Sbjct: 152 KNFKGIDFLSDTVSS-----------------------------LGMDCNEFVASSLIKA 182

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y + G I+   ++FD+++ +D V W  M+  Y + G  +     FS +    I PNA TF
Sbjct: 183 YLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTF 242

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL+ CA     +LG Q+HG +   G D      ++L+ MYSKCG  +++ K+F  M R
Sbjct: 243 DCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR 302

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            D V+W  +I+GY Q+G+ +++L +F  ++ SG  PD I F  +L + +
Sbjct: 303 ADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 13/217 (5%)

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN--GMPR 323
           +L AC++      GKQVH ++        S+    ++ MY+ CG+  +  K+F    + R
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             +  W S+I+ + +NG+ ++AL ++  +L  G  PD   F  ++ AC  A    KG+ +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACV-ALKNFKGIDF 159

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM---PMKPDKFLWASLLGGCR 440
                   G+       + ++      G+     DV SK+    ++ D  +W  +L G  
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKI----DVPSKLFDRVLQKDCVIWNVMLNGYA 215

Query: 441 IHGNLDLAKRAAEALF--EIEPENPATYVTMANIYAS 475
             G LD   +    +   +I P N  T+  + ++ AS
Sbjct: 216 KCGALDSVIKGFSVMRMDQISP-NAVTFDCVLSVCAS 251


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 161/484 (33%), Positives = 270/484 (55%), Gaps = 11/484 (2%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
            +D+     RL++A  +  ++     + +++++    Q+  L+    +  H++ SG +P 
Sbjct: 94  TVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPD 153

Query: 61  VFISNCLLDMYAKCGNISDAQTLFD----EMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
                 L+D   +  +++    ++          DV   NT+I+ ++K G+L  A  LFD
Sbjct: 154 AVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFD 213

Query: 117 EMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAI 172
           E+    R   SW +MI+ Y  + + ++A++ Y+ M +  F   +S   T+ ++LS+    
Sbjct: 214 EINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDIS---TILNLLSSCMQP 270

Query: 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
           + L  G  +H + ++ G DSD  V + L  MY KCG ++ AR +F+ M D+  VSWT MI
Sbjct: 271 KALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMI 330

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y ++G   E   LF+ +  +G +P+  T   +++ C    A ELGK +  Y    G  
Sbjct: 331 SAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLK 390

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                 +AL+ MY+KCG   ++K++F  M    +VSWT++I   A NG    ALE F ++
Sbjct: 391 DNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMM 450

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           L+ G +P+HI F+ VL AC H GLV++GL+ F+ + +K+G+    DHY+C+VDLL R G 
Sbjct: 451 LEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGH 510

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
             EA ++I  MP +PD  +W++LL  C++HG +++ K  +E LFE+EP+    YV MANI
Sbjct: 511 LREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANI 570

Query: 473 YASA 476
           YASA
Sbjct: 571 YASA 574



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 215/458 (46%), Gaps = 43/458 (9%)

Query: 5   LCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L NQ   + AL +  Q+      P+ S +  +++ C +   L   + +H+H+  S F+  
Sbjct: 28  LVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQSN 87

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F+    +DMY KCG + DA  +F EM  RD+ S+N M+ GF + G L++   L   M  
Sbjct: 88  IFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHM-- 145

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                                     R+     ++V+    + S+L   S      LG  
Sbjct: 146 --------------------------RLSGIRPDAVTVLLLIDSILRVKSLTS---LGA- 175

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQE 238
           ++ + +R G   D  V + L   Y KCG++  A  +FD++    R VVSW +MI  Y   
Sbjct: 176 VYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANF 235

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            +  +    +  ++  G  P+  T   +L++C    A   G  VH +  ++G D      
Sbjct: 236 EKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVV 295

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + L+ MYSKCG+V +++ +FNGM     VSWT +I+ YA+ G   +A+  F  +  +G +
Sbjct: 296 NTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEK 355

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD +  + +++ C   G ++ G ++  +    +GL         ++D+ A+ G F++A++
Sbjct: 356 PDLVTVLALISGCGQTGALELG-KWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKE 414

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           +   M  +     W +++  C ++G++   K A E  F
Sbjct: 415 LFYTMANRT-VVSWTTMITACALNGDV---KDALELFF 448



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 12/309 (3%)

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           F+W +     V       AL L+R M+       N  T   VL A + +  LR  + IH 
Sbjct: 19  FTWNSNFRHLVNQGHAQNALILFRQMKQ-SGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           +++++ F S+  V +A  DMY KCG + +A  +F +M  RD+ SW AM+  + Q G  + 
Sbjct: 78  HVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDR 137

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              L   +  SGIRP+A T   ++++     +      V+ +  RIG       A+ L+ 
Sbjct: 138 LSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIA 197

Query: 304 MYSKCGNVENSKKVFNGMPRP--DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
            YSKCGN+ +++ +F+ +      +VSW S+IA YA      KA+  ++ +L  G  PD 
Sbjct: 198 AYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDI 257

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL----ARSGRFHEAE 417
              + +L++C     +  GL     +   HG+    D   C+V+ L    ++ G  H A 
Sbjct: 258 STILNLLSSCMQPKALFHGL-----LVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSAR 312

Query: 418 DVISKMPMK 426
            + + M  K
Sbjct: 313 FLFNGMSDK 321



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           L +W S        G    AL  F  + +SG  P++  F  VL AC     + +  Q  H
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHL-RNSQIIH 76

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           +   K             VD+  + GR  +A +V  +MP++ D   W ++L G    G L
Sbjct: 77  AHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVR-DIASWNAMLLGFAQSGFL 135

Query: 446 D 446
           D
Sbjct: 136 D 136


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 271/490 (55%), Gaps = 34/490 (6%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           AL++ H++     + Y++LI      R         + L +  + P V     LL  Y +
Sbjct: 67  ALRVFHRMPTRDLASYNALISGLSLRR--HTLPDAAAALATIPYPPSVVSFTSLLRGYVR 124

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
            G ++DA  LF +M ER+  SY  ++ GF   G +++AR LFDEMP +D  +WTAM+SGY
Sbjct: 125 HGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGY 184

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE------------- 180
            +  +  EA  L+  M        N  + ++++S  +    + L ++             
Sbjct: 185 CQVGRVDEARTLFDEMPK-----RNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSW 239

Query: 181 ---IHGYIMRTGFDSDEVVWSALSDM-----------YGKCGSINEARQIFDKMVDRDVV 226
              + GYI     +  E +++A+ D            +G+ G ++ A+ +FD+M +RD  
Sbjct: 240 TAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDG 299

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           +W+A+I  Y Q     E  + F E++  GIRPN  +   +L  CA  A  + G++VHG M
Sbjct: 300 TWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAM 359

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            R  +D   +A SAL+ MY KCGN++ +K+VF+     D+V W S+I GYAQ+G+ ++AL
Sbjct: 360 LRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEAL 419

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             F+ +  +G  PD I ++G LTAC++ G V +G   F+S++ K G+    +HYAC+VDL
Sbjct: 420 HIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDL 479

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466
           L R+G   EA  +I  MP++PD  +W +L+G CR+H N ++A+ +A+ L E+EP N   Y
Sbjct: 480 LGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPY 539

Query: 467 VTMANIYASA 476
           V +++IY S+
Sbjct: 540 VLLSHIYTSS 549



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 188/429 (43%), Gaps = 66/429 (15%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           S   P V  +N  +   A+ GN+  A+  F+ M  R   SYN +++G+ +    + A  +
Sbjct: 11  SSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRV 70

Query: 115 FDEMPQRDNFSWTAMIS---------------------------------GYVRYNQPIE 141
           F  MP RD  S+ A+IS                                 GYVR+    +
Sbjct: 71  FHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLAD 130

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+ L+R M    N +S    L   L A    +  +L  E+           D V W+A+ 
Sbjct: 131 AIQLFRQMPE-RNHISYTVLLGGFLDAGRVDEARKLFDEMPA--------KDVVAWTAML 181

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNA 260
             Y + G ++EAR +FD+M  R+VVSWTAM+  Y Q G+      LF  +  ++ +   A
Sbjct: 182 SGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTA 241

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
             F G + A     AEEL   +  +       P + A + ++  + + G V+ +K VF+ 
Sbjct: 242 MLF-GYIQAGRIEDAEELFNAMPDH-------PLA-ACNGMIVGFGQQGMVDAAKSVFDR 292

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   D  +W+++I  Y QN    +AL  F  +L  G +P++   + +LT C    ++D G
Sbjct: 293 MCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYG 352

Query: 381 LQYFHSIKEKHGL----TYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
                  +E HG     ++  D YA   ++ +  + G   +A+ V      K D  +W S
Sbjct: 353 -------REVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPK-DVVMWNS 404

Query: 435 LLGGCRIHG 443
           ++ G   HG
Sbjct: 405 MITGYAQHG 413


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 269/473 (56%), Gaps = 5/473 (1%)

Query: 5   LCNQRRLKEAL-QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           LC+  R+KEAL +   +     P ++S + + C+   AL   +++H+   +SG     F 
Sbjct: 23  LCSTGRVKEALHRRFREGLWSEPGLFSHIFRACQ---ALPLLRQLHAFAATSGAAADRFT 79

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +N LL  YA  G+   A+ LF+ + +R+V S+N +I G+ K G LE AR LFDEMP R+ 
Sbjct: 80  ANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNV 139

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W AM++G        E+L  +  M+  E    +++ L S+    + ++ +  G+++H 
Sbjct: 140 ATWNAMVAGLTNSGLNEESLGFFFAMRR-EGMQPDEYGLGSLFRCCAGLRDVVSGRQVHA 198

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R+G D D  V S+L+ MY +CG + +       +   ++VS    I    Q G  E 
Sbjct: 199 YVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEG 258

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
               F  +  +G+  NA TF   + +C+D AA   G+Q+H    + G D      ++LVH
Sbjct: 259 ALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVH 318

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MYS+CG + +S++V       DLV  +++I+ Y  +G   KA+  F+ ++ +G +P+ + 
Sbjct: 319 MYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVT 378

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ +L AC+H+GL D+G+  F  + + +GL  +  HY CIVDLL RSG  +EAED+I  M
Sbjct: 379 FLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSM 438

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P++PD  +W +LL  C+     D+A+R AE + E++P + A+YV ++NI A++
Sbjct: 439 PVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATS 491


>gi|302768953|ref|XP_002967896.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
 gi|300164634|gb|EFJ31243.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
          Length = 471

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 252/449 (56%), Gaps = 35/449 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +Y  L++FC   + L EGK++H H+   G     F++N L+ MY +CG            
Sbjct: 1   MYEFLMRFCGSRQLLGEGKRIHQHIVDRGHGDDRFLANLLVQMYGQCG------------ 48

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                              + E AR +FD +  R+ FSWT MI+ Y +      AL L+R
Sbjct: 49  -------------------AAEIARAVFDRIADRNVFSWTLMIAAYAQNGHDAAALRLFR 89

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M +     +++  L  +L   + ++ L  G+ IH  I+  GFD+D V  +A+ +MY +C
Sbjct: 90  EM-DLHGEPADRIVLVEILGVCARLELLAQGQTIHARIVALGFDADTVAATAIFNMYARC 148

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G +  AR++FD++ ++ VVSW AMI  Y + G+  +   +F  L + GI  +  +++G+L
Sbjct: 149 GFLRRARELFDRLEEKSVVSWNAMITAYARTGQARQALDIFRRLDQEGIEADEMSYSGLL 208

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            A A   + + G+ +H  +   G++     A+ L++MY KCG VE ++++F+ +P  ++V
Sbjct: 209 AAFAMRQSLDKGRILHARIKACGFEAMLQVANPLINMYGKCGCVEEARRIFDAVPSKNIV 268

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW +++A YA NG   +AL+ F    K    PD I F  VL AC+HAGLVD+   +  S+
Sbjct: 269 SWNTILAAYAGNGRVTEALDLFA---KIAMPPDWISFCVVLQACSHAGLVDEAWDFLLSM 325

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           + +HG+     HY+ +V++  ++G+  EAE +I+ MP++PD  +W SLLG C+IHG+ + 
Sbjct: 326 RSQHGIEPRRAHYSAMVEIFGKAGKLEEAERLIAAMPVEPDAVIWRSLLGACKIHGDTER 385

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
             RAA  + E++P+    Y+ ++N++A+A
Sbjct: 386 GTRAALKVIELKPDESGPYILLSNLHAAA 414



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 172/349 (49%), Gaps = 47/349 (13%)

Query: 14  ALQILHQIS-HPSPS---IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           AL++  ++  H  P+   +   ++  C +   L +G+ +H+ + + GF      +  + +
Sbjct: 84  ALRLFREMDLHGEPADRIVLVEILGVCARLELLAQGQTIHARIVALGFDADTVAATAIFN 143

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MYA+CG +  A+ LFD ++E+ V S+N MI+ + + G   QA ++F  + Q         
Sbjct: 144 MYARCGFLRRARELFDRLEEKSVVSWNAMITAYARTGQARQALDIFRRLDQ--------- 194

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
                   + IEA               ++ + S +L+A +  Q L  G+ +H  I   G
Sbjct: 195 --------EGIEA---------------DEMSYSGLLAAFAMRQSLDKGRILHARIKACG 231

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F++   V + L +MYGKCG + EAR+IFD +  +++VSW  ++  Y   GR  E   LF+
Sbjct: 232 FEAMLQVANPLINMYGKCGCVEEARRIFDAVPSKNIVSWNTILAAYAGNGRVTEALDLFA 291

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAA--EELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
              K  + P+  +F  VL AC+ HA   +E    +    ++ G +P     SA+V ++ K
Sbjct: 292 ---KIAMPPDWISFCVVLQACS-HAGLVDEAWDFLLSMRSQHGIEPRRAHYSAMVEIFGK 347

Query: 308 CGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDK----ALEYFEL 351
            G +E ++++   MP  PD V W SL+     +G  ++    AL+  EL
Sbjct: 348 AGKLEEAERLIAAMPVEPDAVIWRSLLGACKIHGDTERGTRAALKVIEL 396


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 254/462 (54%), Gaps = 34/462 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++L ++  P    ++ LI  C Q   +E G ++H      GF    F+   L+ +YAKCG
Sbjct: 157 RMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCG 216

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            +                               E AR +F ++  RD   W  M+S YV 
Sbjct: 217 FV-------------------------------ENARRVFCDVSCRDLVMWNVMVSCYVF 245

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS--AIQCLRLGKEIHGYIMRTGFDSD 193
            + P EA  ++  M+  +    ++FT SS+LS +S  A++    GK++H  ++R  FDSD
Sbjct: 246 NSLPEEAFRVFNSMR-LDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSD 304

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
            +V SAL +MY K  +I +AR++FD+M  R+VV+W  MI  +   G   E   L  E+++
Sbjct: 305 VLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLR 364

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
            G  P+  T + ++++C   +A     QVH +  ++    +   A++L+  YSKCG++ +
Sbjct: 365 EGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITS 424

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           + K F    +PDLV+WTSLI  YA +G+ +K+ E FE +L  G +PD I F+GVL+AC H
Sbjct: 425 AFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAH 484

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            GLV KGL YF  +   + +   ++HY C+VDLL R G  +EA +++  MP++ D     
Sbjct: 485 CGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLG 544

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           + +G C++H N++LAK AAE LF IEPE    Y  M+NI+AS
Sbjct: 545 AFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFAS 586



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 218/460 (47%), Gaps = 50/460 (10%)

Query: 10  RLKEALQILHQISHPSPSIY----SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           RL+ ++ I +Q     P+      S+ ++   +   L EGK++H+HL   GF   + + N
Sbjct: 40  RLRASMPIPNQTHFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQN 99

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            +L +Y KC             QE                   E A+ LF+E+P R+  S
Sbjct: 100 QILSVYLKC-------------QEA------------------EDAKKLFEELPVRNVVS 128

Query: 126 WTAMISGYVRYNQPIEA------LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           W  MI   V  N   E+         +R M   E  V +  T + ++   +    + +G 
Sbjct: 129 WNIMIRASVGRNDENESSGMRLCFSYFRRML-LEMMVPDHITFNGLICLCTQFNDIEMGV 187

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           ++H + ++ GFD D  V  AL  +Y KCG +  AR++F  +  RD+V W  M+  Y    
Sbjct: 188 QLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNS 247

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE--ELGKQVHGYMTRIGYDPYSFA 297
             EE F +F+ +    +  + FTF+ +L+  +D A E  + GKQVH  + R  +D     
Sbjct: 248 LPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLV 307

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           ASAL++MY+K  N+ ++++VF+ M   ++V+W ++I G+  +G  ++ ++  + +L+ G 
Sbjct: 308 ASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGF 367

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD +    ++++C +A  + + LQ  H+   K            ++   ++ G    A 
Sbjct: 368 LPDELTISSIISSCGYASAITETLQ-VHAFAVKLSCQDFLSVANSLISAYSKCGSITSAF 426

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
               ++  +PD   W SL+     HG   LA+++ E +FE
Sbjct: 427 KCF-ELTSQPDLVTWTSLIYAYAFHG---LAEKSTE-MFE 461



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 40/228 (17%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +K   ++L +   P     SS+I  C    A+ E  +VH+       +  + ++N L+  
Sbjct: 356 MKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISA 415

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSW 126
           Y+KCG+I+ A   F+   + D+ ++ ++I  +   G  E++  +F++M     + D  ++
Sbjct: 416 YSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAF 475

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             ++S         + L  +++M N    V                              
Sbjct: 476 LGVLSACAHCGLVTKGLHYFKLMTNAYQIVP----------------------------- 506

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
               DS+   ++ L D+ G+ G INEA +I   M ++ D  +  A IG
Sbjct: 507 ----DSEH--YTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIG 548


>gi|242034187|ref|XP_002464488.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
 gi|241918342|gb|EER91486.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
          Length = 701

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/527 (31%), Positives = 281/527 (53%), Gaps = 58/527 (11%)

Query: 6   CNQRRL-KEALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           C Q  L  EAL+   ++     P     +S++  C   +AL  GK++HS++   G K  V
Sbjct: 20  CVQNALYDEALEFFLEMCESERPDAVTVASILPACAGLQALGIGKQLHSYVLRCGIKINV 79

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQER------------------------------- 90
           ++   L+ +Y++CG   DA+ +F  +QE+                               
Sbjct: 80  YVGASLIALYSECGEFDDARVVFSTIQEKNVNVWNELVQSYIREGSMDKAWEAFDLMQED 139

Query: 91  ----DVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEA 142
               D+ +YN+ I+ + K G  EQA  LF  M     + +  S  A+I G  R+    +A
Sbjct: 140 GLEPDIVTYNSFIAAYAKVGQNEQAYELFSRMADVGLKPNVVSMNALICGLHRHGLYTDA 199

Query: 143 LDLYRMMQNFENSVSNKF--------------TLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           L+ +R MQ   +  S  +              T++ VLS ++ ++  RLGKE+H Y ++ 
Sbjct: 200 LEAFRYMQRSSDGKSKGWAFLDNCDPIQPTGTTITGVLSLLADLKLDRLGKEVHCYALKN 259

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G  S+  + S L D+YGK G +  A  +F K+ +++VV+W +++  Y      E    L 
Sbjct: 260 GLASNIYISSKLVDLYGKIGDMTSAANVFQKIGNKNVVTWNSLMAAYKHNRMPEVTLKLL 319

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSK 307
            E+ +S + PN  T    L +C    A   G+++H Y+T+     Y +  ASAL++MY K
Sbjct: 320 GEMFQSNLHPNLVTVHIALMSCGVTMALGYGRELHSYITKCWPGGYPTTLASALINMYGK 379

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CGN+E+++ VF      D+  W ++++ Y  + MP   ++ F  L +SG QPDHI F+ +
Sbjct: 380 CGNIEDARLVFKSTVPKDIAVWNAMMSCYLLHRMPMDIIDLFNYLEQSGIQPDHITFILL 439

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC   GL ++   YF+++++ +G+  +  HY C+VD++  +G   E+  +I KMP+KP
Sbjct: 440 LSACKQEGLFEEAQSYFYNMEDVYGIKPSLKHYTCMVDIMGSAGLLAESLTLIQKMPLKP 499

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           D  LW+++L  C++H NL++ ++AA+ALFE+EP NP+ Y+ ++NIYA
Sbjct: 500 DACLWSTVLKACKLHSNLEIGEKAAKALFELEPHNPSNYMVLSNIYA 546



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 143/329 (43%), Gaps = 50/329 (15%)

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW  +ISG V+     EAL+ +  ++  E+   +  T++S+L A + +Q L +GK++H Y
Sbjct: 12  SWNCIISGCVQNALYDEALEFF--LEMCESERPDAVTVASILPACAGLQALGIGKQLHSY 69

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           ++R G   +  V ++L  +Y +CG  ++AR +F  + +++V  W  ++  Y +EG  ++ 
Sbjct: 70  VLRCGIKINVYVGASLIALYSECGEFDDARVVFSTIQEKNVNVWNELVQSYIREGSMDKA 129

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
           +  F  + + G+ P+  T+   + A A     E   ++   M  +G              
Sbjct: 130 WEAFDLMQEDGLEPDIVTYNSFIAAYAKVGQNEQAYELFSRMADVGL------------- 176

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-------- 356
                             +P++VS  +LI G  ++G+   ALE F  + +S         
Sbjct: 177 ------------------KPNVVSMNALICGLHRHGLYTDALEAFRYMQRSSDGKSKGWA 218

Query: 357 -------TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
                   QP      GVL+      L D+  +  H    K+GL       + +VDL  +
Sbjct: 219 FLDNCDPIQPTGTTITGVLSLLADLKL-DRLGKEVHCYALKNGLASNIYISSKLVDLYGK 277

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            G    A +V  K+  K +   W SL+  
Sbjct: 278 IGDMTSAANVFQKIGNK-NVVTWNSLMAA 305



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
           VD  V SW  +I    Q    +E    F E+ +S  RP+A T A +L ACA   A  +GK
Sbjct: 6   VDPGVNSWNCIISGCVQNALYDEALEFFLEMCESE-RPDAVTVASILPACAGLQALGIGK 64

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H Y+ R G     +  ++L+ +YS+CG  ++++ VF+ +   ++  W  L+  Y + G
Sbjct: 65  QLHSYVLRCGIKINVYVGASLIALYSECGEFDDARVVFSTIQEKNVNVWNELVQSYIREG 124

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             DKA E F+L+ + G +PD + +   + A    G  ++  + F  + +  GL       
Sbjct: 125 SMDKAWEAFDLMQEDGLEPDIVTYNSFIAAYAKVGQNEQAYELFSRMADV-GLKPNVVSM 183

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPD 428
             ++  L R G + +A +    M    D
Sbjct: 184 NALICGLHRHGLYTDALEAFRYMQRSSD 211



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/448 (19%), Positives = 171/448 (38%), Gaps = 94/448 (20%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---------------------- 89
           ++  G  PGV   NC++    +     +A   F EM E                      
Sbjct: 1   MRQRGVDPGVNSWNCIISGCVQNALYDEALEFFLEMCESERPDAVTVASILPACAGLQAL 60

Query: 90  ---RDVCSY-------------NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
              + + SY              ++I+ +++ G  + AR +F  + +++   W  ++  Y
Sbjct: 61  GIGKQLHSYVLRCGIKINVYVGASLIALYSECGEFDDARVVFSTIQEKNVNVWNELVQSY 120

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           +R     +A + + +MQ                                      G + D
Sbjct: 121 IREGSMDKAWEAFDLMQ------------------------------------EDGLEPD 144

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVD----RDVVSWTAMIGRYFQEGRREEGFALFS 249
            V +++    Y K G   +A ++F +M D     +VVS  A+I    + G   +    F 
Sbjct: 145 IVTYNSFIAAYAKVGQNEQAYELFSRMADVGLKPNVVSMNALICGLHRHGLYTDALEAFR 204

Query: 250 ELIKSG---------------IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
            + +S                I+P   T  GVL+  AD   + LGK+VH Y  + G    
Sbjct: 205 YMQRSSDGKSKGWAFLDNCDPIQPTGTTITGVLSLLADLKLDRLGKEVHCYALKNGLASN 264

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            + +S LV +Y K G++ ++  VF  +   ++V+W SL+A Y  N MP+  L+    + +
Sbjct: 265 IYISSKLVDLYGKIGDMTSAANVFQKIGNKNVVTWNSLMAAYKHNRMPEVTLKLLGEMFQ 324

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           S   P+ +     L +C     +  G +    I +     Y     + ++++  + G   
Sbjct: 325 SNLHPNLVTVHIALMSCGVTMALGYGRELHSYITKCWPGGYPTTLASALINMYGKCGNIE 384

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIH 442
           +A  ++ K  +  D  +W +++    +H
Sbjct: 385 DAR-LVFKSTVPKDIAVWNAMMSCYLLH 411


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 262/474 (55%), Gaps = 43/474 (9%)

Query: 6   CNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           C +R L  A+ +L  +           YS LI+ C  + A+ EGK+VH H+ S+G+ P  
Sbjct: 261 CYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKT 320

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++N L++MY K                     +N           LE+A+ LFD+MP+R
Sbjct: 321 FLTNILINMYVK---------------------FNL----------LEEAQVLFDKMPER 349

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKE 180
           +  SWT MIS Y        A+ L   M  F + V  N FT SSVL A   +  L   K+
Sbjct: 350 NVVSWTTMISAYSNAQLNDRAMRLLAFM--FRDGVMPNMFTFSSVLRACERLYDL---KQ 404

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H +IM+ G +SD  V SAL D+Y K G + EA ++F +M+  D V W ++I  + Q   
Sbjct: 405 LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSD 464

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            +E   L+  + + G   +  T   VL AC   +  ELG+Q H ++ +  +D      +A
Sbjct: 465 GDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNA 522

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY KCG++E++K +FN M + D++SW+++IAG AQNG   +AL  FE +   G +P+
Sbjct: 523 LLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPN 582

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           HI  +GVL AC+HAGLV++G  YF S+   +G+    +HY C++DLL R+ +  +   +I
Sbjct: 583 HITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLI 642

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +M  +PD   W +LL  CR   N+DLA  AA+ + +++P++   YV ++NIYA
Sbjct: 643 HEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYA 696



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 37/152 (24%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLI---------------------------- 33
           ID+      L EAL++  ++      +++S+I                            
Sbjct: 425 IDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQ 484

Query: 34  -------QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
                  + C     LE G++ H H+    F   + ++N LLDMY KCG++ DA+ +F+ 
Sbjct: 485 STLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNR 542

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           M ++DV S++TMI+G  + G   +A NLF+ M
Sbjct: 543 MAKKDVISWSTMIAGLAQNGFSMEALNLFESM 574


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 262/500 (52%), Gaps = 70/500 (14%)

Query: 14  ALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           AL+I  ++     P+ + Y ++I        L EG+K+H+ + ++GF   + ++  L++M
Sbjct: 192 ALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINM 251

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y KCG                               S  +AR +FD+M +RD  SW  MI
Sbjct: 252 YGKCG-------------------------------SSHEAREVFDKMKKRDMVSWNVMI 280

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
             YV      EAL+LY+ + + E     K T  S+L A S+++ L  G+ +H +I+  G 
Sbjct: 281 GCYVLNGDFHEALELYQKL-DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIF--------------------------------- 217
           DS+  V +AL +MY KCGS+ EAR++F                                 
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399

Query: 218 -DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAA 275
            D++  RD +SW AMI  Y Q G       +F E+   +G++P+A TF  VL ACA    
Sbjct: 400 FDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
               K +H  ++    +      + L++MY++CG++E ++++F       +VSWT+++A 
Sbjct: 460 LSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAA 519

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           ++Q G   +AL+ F+ +   G +PD + +  +L  CTH G +++G +YF  + E H L  
Sbjct: 520 FSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAP 579

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           TADH+A +VDLL RSGR  +A++++  MP +PD   W + L  CRIHG L+L + AAE +
Sbjct: 580 TADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERV 639

Query: 456 FEIEPENPATYVTMANIYAS 475
           +E++P + A Y+ M+NIYA+
Sbjct: 640 YELDPSSTAPYIAMSNIYAA 659



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/581 (26%), Positives = 255/581 (43%), Gaps = 145/581 (24%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    + +++  C     + EG+ +H  ++ S F+    + N L+ MY KC ++ DA++
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 83  LFDEM--QERDVCSYNTMISGFTKGG--------------------------------SL 108
           +F+ M  ++R+V S+N MI+ + + G                                SL
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 109 EQARNLFDEM--PQRDNFS--WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS- 163
            Q R + + +     D+F     A+++ Y R+    +A  +++ +Q  + +  N   L+ 
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 164 ----------------------------SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                                       +V+S  S  + L  G++IH  I+  GFD+D V
Sbjct: 184 SQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLV 243

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +AL +MYGKCGS +EAR++FDKM  RD+VSW  MIG Y   G   E   L+ +L   G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEG 303

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
            +    TF  +L AC+   A   G+ VH ++   G D     A+ALV+MY+KCG++E ++
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEAR 363

Query: 316 KVFNGMPRPDLVSWTSLIAGYA----------------------------------QNGM 341
           KVFN M   D V+W++LI  YA                                  QNG 
Sbjct: 364 KVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGC 423

Query: 342 PDKALEYF-ELLLKSGTQPDHIVFVGVLTACT-----------HA--------------- 374
              A++ F E+   +G +PD + F+ VL AC            HA               
Sbjct: 424 AVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTN 483

Query: 375 ---------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
                    G +++  + F + KEK  +++TA     +V   ++ GR+ EA D+  +M +
Sbjct: 484 TLINMYARCGSLEEAERLFAAAKEKTVVSWTA-----MVAAFSQYGRYAEALDLFQEMDL 538

Query: 426 ---KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
              KPD   + S+L  C   G+L+   R    + E+    P
Sbjct: 539 EGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAP 579



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 209/408 (51%), Gaps = 13/408 (3%)

Query: 72  AKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFS 125
           + CG++ + + L + ++    ERD    N +IS + K  SL  AR++F+ M   QR+  S
Sbjct: 18  SSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVS 77

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI+ Y +     EAL LY  M N +   ++  T  SVL A S+   L  G+EIH  +
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRM-NLQGLGTDHVTFVSVLGACSS---LAQGREIHNRV 133

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
             +G DS + + +AL  MY + GS+ +A+++F  +  RD  SW A+I  + Q G      
Sbjct: 134 FYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGAL 193

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F E+ K  ++PN+ T+  V++  +       G+++H  +   G+D     A+AL++MY
Sbjct: 194 RIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMY 252

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCG+   +++VF+ M + D+VSW  +I  Y  NG   +ALE ++ L   G +     FV
Sbjct: 253 GKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFV 312

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +L AC+    + +G +  HS   + GL         +V++ A+ G   EA  V + M  
Sbjct: 313 SILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKN 371

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           + D   W++L+G    +G    A++A +    +   +  ++  M   Y
Sbjct: 372 R-DAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY 418



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 25/230 (10%)

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  TF  VL +C+       G+ +H  +    ++  +   +AL+ MY KC ++ +++ 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 317 VFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT-- 372
           VF  M   + ++VSW ++IA YAQNG   +AL  +  +   G   DH+ FV VL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 373 ------HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
                 H  +   GL  F S+               +V + AR G   +A+ +   +  +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLAN------------ALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRA-AEALFEIEPENPATYVTMANIYAS 475
            D+  W +++      G+   A R   E   +++P N  TY+ + + +++
Sbjct: 172 -DETSWNAVILAHSQSGDWSGALRIFKEMKCDVKP-NSTTYINVISGFST 219


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 270/470 (57%), Gaps = 16/470 (3%)

Query: 8   QRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           ++ L +A   L  I  P PS+  ++SL++   ++  L +  ++   +          +  
Sbjct: 93  RQTLPDAAAALASIPFP-PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LLD     G +++A+ LFDEM +RDV ++  M+SG+ + G + +AR LFDEMP+R+  S
Sbjct: 152 GLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WTAMISGY +  +   A  L+ +M        N+ + +++L  V  IQ   +  E    +
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPE-----RNEVSWTAML--VGYIQAGHV--EDAAEL 258

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
                +      +A+   +G+ G ++ A+ +F+KM +RD  +W+AMI  Y Q     E  
Sbjct: 259 FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           + F E++  G+RPN  +   +L  CA  A  + G++VH  M R  +D   FA SAL+ MY
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMY 378

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCGN++ +K+VF+     D+V W S+I GYAQ+G+ ++AL  F  +  +G  PD I ++
Sbjct: 379 IKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYI 438

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G LTAC++ G V +G + F+S+     +   A+HY+C+VDLL RSG   EA D+I  MP+
Sbjct: 439 GALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV 498

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +PD  +W +L+G CR+H N ++A+ AA+ L E+EP N   YV +++IY S
Sbjct: 499 EPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTS 548



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 184/416 (44%), Gaps = 60/416 (14%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N  +   A+ GNI  A+  F+ M  R   SYN +++G+ +    + A  LF  MP RD  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           S+ A+ISG          L L R  Q   ++ +   ++    S VS    LR G   HG 
Sbjct: 81  SYNALISG----------LSLRR--QTLPDAAAALASIPFPPSVVSFTSLLR-GYVRHGL 127

Query: 185 ------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
                 + +   + + V ++ L       G +NEAR++FD+M DRDVV+WTAM+  Y Q 
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           GR  E  ALF E+ K     N  ++  +++  A +    L +++   M     +    + 
Sbjct: 188 GRITEARALFDEMPKR----NVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSW 239

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD--------------- 343
           +A++  Y + G+VE++ ++FN MP   + +  +++ G+ Q GM D               
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 344 ----------------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
                           +AL  F  +L  G +P++   + +LT C    ++D G +  H+ 
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE-VHAA 358

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +          + ++ +  + G   +A+ V      K D  +W S++ G   HG
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG 413


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/418 (37%), Positives = 234/418 (55%), Gaps = 32/418 (7%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           DV   N  +  ++  G +  AR LFDE P RD  SW  +I GYVR   P EAL+L+  + 
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214

Query: 151 NFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
              N+V  ++ T+   +S  + +  L LGK +H ++   G      + +A+ DMY KCGS
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274

Query: 210 IN-------------------------------EARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +                                +AR +FD+M +RDV  W A++  Y Q 
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            + +E  ALF E+ KS + PN  T   +L+AC+   A E+G  VH Y+ R          
Sbjct: 335 KQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALG 394

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++LV MY+KCGN++ +  VFN +P  + ++WTS+I G A +G  D+A+EYF+ ++  G Q
Sbjct: 395 TSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQ 454

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD I F+GVL+AC HAGLV+ G Q+F  +  K+ L     HY+C++DLL R+G   EAE 
Sbjct: 455 PDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQ 514

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +++ MPM PD  +W +L   CR+HGN+ L ++AA  L E++P +   YV +AN+YA A
Sbjct: 515 LVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEA 572



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 164/339 (48%), Gaps = 35/339 (10%)

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L LYR + +  ++  +  T   ++ A + +Q    G  + G++ + GF +D  V +A   
Sbjct: 105 LPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMH 164

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNA 260
            +   G +  AR++FD+   RDVVSW  +IG Y + G   E   LF  L + G  +RP+ 
Sbjct: 165 FWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDE 224

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV--------- 311
            T  G ++ CA     ELGK++H ++   G        +A++ MY KCG++         
Sbjct: 225 VTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFER 284

Query: 312 ----------------------ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                                 E+++ +F+ MP  D+  W +L+AGY QN    +A+  F
Sbjct: 285 ISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALF 344

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             + KS   P+ I  V +L+AC+  G ++ G+   H I ++H L  +      +VD+ A+
Sbjct: 345 HEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYI-DRHKLHLSVALGTSLVDMYAK 403

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            G   +A  V +++P++ +   W S++ G   HG+ D A
Sbjct: 404 CGNIKKAICVFNEIPVQ-NALTWTSMICGLANHGHADEA 441


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 253/460 (55%), Gaps = 62/460 (13%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P V     LL+ Y + G I+DA+ LFD M ER+V ++N M+ G+     +E+A  LFDEM
Sbjct: 233 PNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEM 292

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P +++ SWT +ISG  R  +  EA DL   M    N V+ K  L                
Sbjct: 293 PIKNSISWTTIISGLARAGKLQEAKDLLDKMS--FNCVAAKTAL---------------- 334

Query: 179 KEIHGYIMRTGFDS-----------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             +HGY+ R   D            D V W+ +   Y +CG + EA  +F +M ++D+VS
Sbjct: 335 --MHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVS 392

Query: 228 WTAMIGRYFQEGRREEGFALFSE------------------------------LIKSGI- 256
           W  MI  Y Q+G+  +   +F                                L++ G  
Sbjct: 393 WNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTN 452

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           R +  T+A  L ACA+ A   +G+Q+H  + R G+   SFA +AL+  Y+KCG +  +K+
Sbjct: 453 RADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQ 512

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F+ M   D+VSW +LI GYA NG   +A+  F  +  +G +PD + FVG+L+AC+HAGL
Sbjct: 513 IFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGL 572

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +D+GL +F+S+ +++ L   A+HYAC+VDLL R+G+ +EA +++  M ++P+  +W +LL
Sbjct: 573 IDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALL 632

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           G C +H N +LA+ AAE L E+EP   + YV ++NI A A
Sbjct: 633 GACHMHKNHELAQLAAERLSELEPRKASNYVLLSNISAEA 672



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 206/486 (42%), Gaps = 119/486 (24%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N +L   A+ G I +A+ LFD M  R+  S+N MI+  +  G +  AR+LFD MP RD F
Sbjct: 53  NAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDEF 112

Query: 125 SWTAMISGYVR----------------------YNQPI----------EALDLYRMMQNF 152
           SWT M+S Y R                      YN  I          +A+ L R M   
Sbjct: 113 SWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPA- 171

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKE-----------IHGYIMRTG-----------F 190
            + VS    L+ +  +   ++ ++   E           + G++ RTG            
Sbjct: 172 PDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFV-RTGDLNAASSFFAKI 230

Query: 191 DSDEVV-WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           +S  V+ W  L + Y + G I +AR +FD+M +R+VV+W  M+  Y      EE   LF 
Sbjct: 231 ESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFD 290

Query: 250 EL-IKSGIRPNAFTFAGVLNACADHAAEELGKQ------------VHGYMTRIGYDPY-- 294
           E+ IK+ I       +G+  A     A++L  +            +HGY+ R   D    
Sbjct: 291 EMPIKNSISWTTI-ISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARR 349

Query: 295 ---------SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
                    +   + ++  Y +CG +E +  +F  MP  D+VSW ++IAGYAQ+G   KA
Sbjct: 350 IFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKA 409

Query: 346 LEYFE------------------------------LLLKSGT-QPDHIVFVGVLTACTHA 374
           +  F                               +L++ GT + D   +   L AC + 
Sbjct: 410 IGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANL 469

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
            ++  G Q  H++  + G  +  D +A   ++   A+ GR  EA+ +  +M  K D   W
Sbjct: 470 AVLHVGRQ-LHNLLVRSG--HINDSFAGNALISTYAKCGRILEAKQIFDEMVYK-DIVSW 525

Query: 433 ASLLGG 438
            +L+ G
Sbjct: 526 NALIDG 531



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 162/366 (44%), Gaps = 65/366 (17%)

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F SN  L   A+ G ++ A+ LFD M  R+  +YN M+S   + G +++AR LFD MP R
Sbjct: 19  FRSNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGR 78

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           +  SW AMI+    + +  +A  L+  M      V ++F+ + ++S  +    L L +++
Sbjct: 79  NTVSWNAMIAALSDHGRVADARSLFDRM-----PVRDEFSWTVMVSCYARGGDLELARDV 133

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
              + R   D     ++A+   Y K G  ++A ++  +M   D+VSW + +    Q G  
Sbjct: 134 ---LDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEM 190

Query: 242 EEGFALFSELIKSGIRPN----AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
                 F E++K     N     F   G LNA +   A+     V  ++T          
Sbjct: 191 VRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVT---------- 240

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
              L++ Y + G + +++ +F+ MP  ++V+W  ++ GY                     
Sbjct: 241 ---LLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGY--------------------- 276

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
                          H   +++  + F  +  K+ +++T      I+  LAR+G+  EA+
Sbjct: 277 --------------VHLSPIEEACKLFDEMPIKNSISWTT-----IISGLARAGKLQEAK 317

Query: 418 DVISKM 423
           D++ KM
Sbjct: 318 DLLDKM 323



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S Y+S ++ C     L  G+++H+ L  SG     F  N L+  YAKCG I +A+ +FDE
Sbjct: 457 STYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDE 516

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           M  +D+ S+N +I G+   G   +A  +F EM
Sbjct: 517 MVYKDIVSWNALIDGYASNGQGTEAIAVFREM 548



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           ++ G +  ++++F+ MP  + V++ ++++  A++G  D+A   F+ +    T    + + 
Sbjct: 29  ARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNT----VSWN 84

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            ++ A +  G V      F  +  +   ++T      +V   AR G    A DV+ +MP 
Sbjct: 85  AMIAALSDHGRVADARSLFDRMPVRDEFSWTV-----MVSCYARGGDLELARDVLDRMPG 139

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKR 450
                 + +++ G   +G  D A +
Sbjct: 140 DKCTACYNAMISGYAKNGRFDDAMK 164


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 262/457 (57%), Gaps = 29/457 (6%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+ S +   I+ C     +  GK+ H      G++  +F+S+ L+ MY+ CG + DA+ 
Sbjct: 73  YPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK 132

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FDE+ +RD+ S+ +MI G+   G+   A +LF ++   +N    AM             
Sbjct: 133 VFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM------------- 179

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                    F +S+     L SV+SA S +    L + IH ++++ GFD    V + L D
Sbjct: 180 ---------FLDSMG----LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLD 226

Query: 203 MYGKCGS--INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP-N 259
            Y K G   +  AR+IFD++VD+D VS+ +++  Y Q G   E F +F  L+K+ +   N
Sbjct: 227 AYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFN 286

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           A T + VL A +   A  +GK +H  + R+G +      ++++ MY KCG VE ++K F+
Sbjct: 287 AITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   ++ SWT++IAGY  +G   KALE F  ++ SG +P++I FV VL AC+HAGL  +
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVE 406

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G ++F+++K + G+    +HY C+VDLL R+G   +A D+I +M MKPD  +W+SLL  C
Sbjct: 407 GWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAAC 466

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           RIH N++LA+ +   LFE++  N   Y+ +++IYA A
Sbjct: 467 RIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADA 503



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 185/375 (49%), Gaps = 19/375 (5%)

Query: 113 NLFDE-MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
            LF+  + + D FSW ++I+   R     EAL  +  M+   +    + +    + A S+
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL-SLYPTRSSFPCAIKACSS 88

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           +  +  GK+ H      G+ SD  V SAL  MY  CG + +AR++FD++  RD+VSWT+M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSM 148

Query: 232 IGRYFQEGRREEGFALFSELI------KSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           I  Y   G   +  +LF +L+         +  ++     V++AC+   A+ L + +H +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 286 MTRIGYDPYSFAASALVHMYSKCGN--VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           + + G+D      + L+  Y+K G   V  ++K+F+ +   D VS+ S+++ YAQ+GM +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 344 KALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           +A E F  L+K+     + I    VL A +H+G +  G +  H    + GL         
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTS 327

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEP 460
           I+D+  + GR   A     +M  K  +  W +++ G  +HG+   A +A E LF   I+ 
Sbjct: 328 IIDMYCKCGRVETARKAFDRMKNKNVRS-WTAMIAGYGMHGH---AAKALE-LFPAMIDS 382

Query: 461 ENPATYVTMANIYAS 475
                Y+T  ++ A+
Sbjct: 383 GVRPNYITFVSVLAA 397


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/469 (31%), Positives = 278/469 (59%), Gaps = 36/469 (7%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R +++LQ+  ++     +P+   ++ +++ C    A   GK VH  +  + ++  +++  
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LLD+Y K G+ +D                                  +F+EMP+ D   
Sbjct: 182 GLLDLYTKFGDANDV-------------------------------LRVFEEMPKHDVIP 210

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W+ MIS Y + NQ  EA++L+  M+     + N+FT +SVL + ++I+ L+LGK++H ++
Sbjct: 211 WSFMISRYAQSNQSREAVELFGQMRR-AFVLPNQFTFASVLQSCASIENLQLGKQVHCHV 269

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ G D +  V +AL D+Y KCG ++ + ++F ++ +R+ V+W  MI  Y Q G  ++  
Sbjct: 270 LKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKAL 329

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           +L+  +++  ++ +  T++ VL ACA  AA ELG Q+H    +  YD      +AL+ MY
Sbjct: 330 SLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMY 389

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG+++N++ VF+ +   D +SW ++I+GY+ +G+  +AL+ F+++ ++   P+ + FV
Sbjct: 390 AKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFV 449

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +L+AC++AGL+D G  YF S+ + +G+    +HY C+V LL RSG   +A  +I ++P+
Sbjct: 450 SILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPL 509

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +P+  +W +LLG C IH ++DL   +A+ + +I+P++ AT+V ++NIYA
Sbjct: 510 EPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558



 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 238/455 (52%), Gaps = 12/455 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSG--FKPGVFISNCLLDMYAKCGNISDA--QTLF 84
           + +LIQ   Q+  L+E   + S +   G    P VF +   L +  +C  ++ +    ++
Sbjct: 9   FVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIY 68

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
               E +      +I  +   GS+  AR  FD +  +D  SWT M++ Y   ++  ++L 
Sbjct: 69  KLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQ 128

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L+  M+    +  N FT + VL A   ++   +GK +HG +++T ++ D  V   L D+Y
Sbjct: 129 LFAEMRMVGFN-PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLY 187

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G  N+  ++F++M   DV+ W+ MI RY Q  +  E   LF ++ ++ + PN FTFA
Sbjct: 188 TKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFA 247

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            VL +CA     +LGKQVH ++ ++G D   F ++AL+ +Y+KCG ++NS K+F  +P  
Sbjct: 248 SVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNR 307

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           + V+W ++I GY Q+G  DKAL  ++ +L+   Q   + +  VL AC     ++ G Q  
Sbjct: 308 NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ-I 366

Query: 385 HSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           HS+  K    Y  D      ++D+ A+ G    A  ++  M  + D+  W +++ G  +H
Sbjct: 367 HSLSLK--TIYDKDVVVGNALIDMYAKCGSIKNAR-LVFDMLSERDEISWNAMISGYSMH 423

Query: 443 GNLDLAKRAAEALFEIE-PENPATYVTMANIYASA 476
           G +  A +A + + E E   N  T+V++ +  ++A
Sbjct: 424 GLVGEALKAFQMMQETECVPNKLTFVSILSACSNA 458



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 186/359 (51%), Gaps = 4/359 (1%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP R+  S+  +I GYV+  Q  E +DL+  +   E    N F  +++L  + +++C  L
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHR-EGHELNPFVFTTILKLLVSVECAEL 59

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
              +H  I + G +S+  V +AL D Y  CGS+N ARQ FD +  +D+VSWT M+  Y +
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             R ++   LF+E+   G  PN FTFAGVL AC    A  +GK VHG + +  Y+   + 
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
              L+ +Y+K G+  +  +VF  MP+ D++ W+ +I+ YAQ+    +A+E F  + ++  
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+   F  VL +C     +  G Q  H    K GL         ++D+ A+ GR   + 
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQ-VHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYAS 475
            +  ++P + ++  W +++ G    G+ D A    + + E + + +  TY ++    AS
Sbjct: 299 KLFMELPNR-NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACAS 356


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 260/469 (55%), Gaps = 19/469 (4%)

Query: 24  PSPSIYSSLIQFCRQNRALEE-GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+    S +++ C  N      GK +H  +  +G      ++N +LD Y KC     A+ 
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF  M E+D  S+N M+S + + G ++++ +LF ++P +D  SW  MI G +R      A
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 143 LDL-YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           L+L Y+M+        NK T S  L   S++  L LGK+IH  +++ G   D  V ++L 
Sbjct: 505 LELLYKMVA--AGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLI 562

Query: 202 DMYGKCGSINEARQIFDKMVDR---------------DVVSWTAMIGRYFQEGRREEGFA 246
           DMY KCG + +A  IF  +                  + VSW++M+  Y Q GR E+   
Sbjct: 563 DMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALK 622

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
            FS +I S +  + FT   V++ACA     ELG+QVHGY+ +IG+    F  S+++ MY 
Sbjct: 623 TFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYV 682

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++ ++  +FN     ++V WTS+I+G A +G   +A+  FEL++  G  P+ + FVG
Sbjct: 683 KCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVG 742

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VLTAC+HAGL+++G +YF  ++E +G+   A+H+ C+VDL  R+GR +E ++ I    + 
Sbjct: 743 VLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAIS 802

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
               +W S L  CR+H N+++     + L E+EP +   Y+  ++I A+
Sbjct: 803 KLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICAT 851



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 203/442 (45%), Gaps = 87/442 (19%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL++YAK  N+  A  +F+E+ + DV S+  +ISGF                      
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFA--------------------- 363

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA-IQCLRLGKEIHG 183
                     R     + L L+  MQ+ +    N+FTLS VL + S+ +   R+GK IHG
Sbjct: 364 ----------RIGLSADVLGLFTKMQD-QGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHG 412

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           +I+R G D D V+ +++ D Y KC     A ++F  M ++D VSW  M+  Y Q G  ++
Sbjct: 413 WILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQK 472

Query: 244 GFALFSEL-------------------------------IKSGIRPNAFTFAGVLNACAD 272
              LF +L                               + +G   N  TF+  L   + 
Sbjct: 473 SVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASS 532

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-------- 324
            +   LGKQ+H  + ++G     F  ++L+ MY KCG +E +  +F  +P+         
Sbjct: 533 LSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEE 592

Query: 325 -------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
                  + VSW+S+++GY QNG  + AL+ F  ++ S  + D      V++AC  AG++
Sbjct: 593 SCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVL 652

Query: 378 DKGLQYFHSIKE-KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           + G Q    I++  HGL       + I+D+  + G  ++A  + ++   + +  LW S++
Sbjct: 653 ELGRQVHGYIQKIGHGLDVFLG--SSIIDMYVKCGSLNDAWLIFNQAKDR-NVVLWTSMI 709

Query: 437 GGCRIHGNLDLAKRAAEALFEI 458
            GC +HG      R A  LFE+
Sbjct: 710 SGCALHGQ----GREAVRLFEL 727



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 10/174 (5%)

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+++Y+K  N+E + K+F  +P+ D+ SWT LI+G+A+ G+    L  F  +   G  P+
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 361 HIVFVGVLTACT---HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
                 VL +C+   +   + KG+   H    ++GL   A     I+D   +   F  AE
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGI---HGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE 443

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
            +   M  K D   W  ++      G++   +++ +   ++  ++ A++ TM +
Sbjct: 444 KLFGLMAEK-DTVSWNIMMSSYLQIGDM---QKSVDLFRQLPGKDAASWNTMID 493


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 262/482 (54%), Gaps = 46/482 (9%)

Query: 5   LCNQ-------RRLKEALQI-----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL 52
           LC Q       +R  EAL++     L+         Y +L+  C   +++   KKV +++
Sbjct: 98  LCGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYM 157

Query: 53  KSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112
            +SG  P  ++ N +L M+ KCG + DA                               R
Sbjct: 158 INSGLDPDEYLRNRVLLMHVKCGMMIDA-------------------------------R 186

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM-QNFENSVSNKFTLSSVLSAVSA 171
            LFDEMP+++  SW  +I G V      EA  L+ MM Q+F ++ S  F   +++ A + 
Sbjct: 187 RLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFV--TMIRASAG 244

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           +  +  G+++H   ++TG   D  V  AL DMY KCGSI +A+ +FD+M ++  V W ++
Sbjct: 245 LGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSI 304

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  Y   G  EE  +++ E+  SG++ + FTF+ ++  CA  A+ E  KQ H  + R G+
Sbjct: 305 IAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGF 364

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                A +ALV +YSK G +E++K VF+ MP  +++SW +LIAGY  +G   +A+E FE 
Sbjct: 365 GLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFER 424

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +L  G  P+H+ F+ VL+AC+++GL D+G + F S+   H +   A HYAC+++LL R G
Sbjct: 425 MLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREG 484

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
              EA  +I   P KP   +WA+LL  CR+H N +L K AAE L+ + PE  + YV + N
Sbjct: 485 LLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLN 544

Query: 472 IY 473
           IY
Sbjct: 545 IY 546


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 240/418 (57%), Gaps = 8/418 (1%)

Query: 65   NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG-----FTKGGSLEQARNLFDEMP 119
            NCL+     C NI   + L   +    V   N  ++      +     L  A  LFDEMP
Sbjct: 1083 NCLISTLLNCKNICQIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMP 1142

Query: 120  QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLG 178
            Q++  SW+ MI G+V+  + ++    ++ +    N V  + +TL  V+ A      L +G
Sbjct: 1143 QKNPVSWSIMIGGFVKVGEFMQCYKTFKEL--IRNGVQPDNYTLPFVIKACRDTVALDMG 1200

Query: 179  KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
            + IH  +++ G   D  V +AL DMY KC  I +A+ +FD M  +D+V+WT MIG Y + 
Sbjct: 1201 RLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAEC 1260

Query: 239  GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            G  +E   LF  L + G  P+      ++NACA   A    + VH Y+ R  +       
Sbjct: 1261 GNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILG 1320

Query: 299  SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            +A++ MY+KCG+V++++++F+ M   +++SW+++IA Y  +G   KALE F ++L SG  
Sbjct: 1321 TAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGIL 1380

Query: 359  PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            P++I FV +L AC+HAGLV+ GL     + E  G+     H+ C+VDLL R+G+  EA  
Sbjct: 1381 PNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFR 1440

Query: 419  VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             I  M ++ D+ LW+SLLG CRIH  +DLA++AA++L E++P+NP  Y+ ++NIYA+A
Sbjct: 1441 FIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYANA 1498



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 34/306 (11%)

Query: 32   LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
            +I+ CR   AL+ G+ +H  +   G     F+   L+DMYAKC  I DA+ LFD M  +D
Sbjct: 1187 VIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKD 1246

Query: 92   VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
            + ++  MI G+ + G+ +++  LFD + +                               
Sbjct: 1247 LVTWTVMIGGYAECGNAKESLVLFDHLRE------------------------------- 1275

Query: 152  FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
             E  V +K  + S+++A + +  +   + +H Y+ R  F  D ++ +A+ DMY KCG ++
Sbjct: 1276 -EGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVD 1334

Query: 212  EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
             AR+IFD M  ++V+SW+AMI  Y   G+ ++   LF  ++ SGI PN  TF  +L AC+
Sbjct: 1335 SAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACS 1394

Query: 272  DHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSW 329
                 E G  +   M    G  P     + +V +  + G +  + +    M    D   W
Sbjct: 1395 HAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLW 1454

Query: 330  TSLIAG 335
            +SL+  
Sbjct: 1455 SSLLGA 1460



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 34/212 (16%)

Query: 24   PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
            P      S++  C +  A+ + + VH ++  + F   V +   ++DMYAKCG++  A+ +
Sbjct: 1280 PDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREI 1339

Query: 84   FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            FD M  ++V S++ MI+ +                             GY  + Q  +AL
Sbjct: 1340 FDNMHHKNVISWSAMIAAY-----------------------------GY--HGQGKKAL 1368

Query: 144  DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSD 202
            +L+ MM +    + N  T  S+L A S    +  G  +   +  + G   D    + + D
Sbjct: 1369 ELFPMMLS-SGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVD 1427

Query: 203  MYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            + G+ G + EA +  + M V++D   W++++G
Sbjct: 1428 LLGRAGQLTEAFRFIENMTVEKDEGLWSSLLG 1459


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 265/471 (56%), Gaps = 47/471 (9%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +R++EA ++   +   +   ++++I    +NR +++  +V   +            N ++
Sbjct: 52  KRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSW----NAVI 107

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
               +CG + +A+  FDEM +RDV S+ TM+ G  + G +++AR +FD MP+R+  SW A
Sbjct: 108 AALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNA 167

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           M++GY +  +  EA DL+  M   E ++S+  T+                  I G+I   
Sbjct: 168 MVTGYAKNMRLDEAFDLFERMP--ERNLSSWNTM------------------ITGFI--- 204

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
              + E+ W               AR++F++M +++VVSWT MI  Y QEG  E    +F
Sbjct: 205 --QNGELAW---------------ARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVF 247

Query: 249 SELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
            E+IK G  RPN  TF  VL AC+D A    G+QVH  +++  Y   +F ASAL++MYSK
Sbjct: 248 VEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSK 307

Query: 308 CGNVENSKKVFNG--MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           CG +  ++K+F+   + + DLV W  +IA YA +G   +A+E FE +   G +P+ + +V
Sbjct: 308 CGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYV 367

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +L+AC+HAGLVD+GL YF  +   + +    DH+AC+VDL  R+GR  EA D I ++  
Sbjct: 368 ELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGT 427

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           K    +W  LL GC  HG+L++ + AA+ L + +PEN  TY+ ++NIYAS 
Sbjct: 428 KASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASG 478



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 186/392 (47%), Gaps = 64/392 (16%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
           V     ++  Y KCG I DA+ LFD +   +DV ++  M+SG+ +   +E+A  LF+ MP
Sbjct: 6   VVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMP 65

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
            ++  SW  MI GY +  +  +A++++  M        N  + ++V++A+  +QC R+ +
Sbjct: 66  VKNVVSWNTMIDGYGKNREVDKAIEVFERMHE-----RNMVSWNAVIAAL--VQCGRVEE 118

Query: 180 EIHGYIMRTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
                  R  FD     D + W+ +     + G ++EAR++FD+M +R+VVSW AM+  Y
Sbjct: 119 ------ARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGY 172

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            +  R +E F LF  + +  +                                       
Sbjct: 173 AKNMRLDEAFDLFERMPERNLS-------------------------------------- 194

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLK 354
            + + ++  + + G +  ++KVFN MP  ++VSWT++I GY Q G  + AL+ F E++  
Sbjct: 195 -SWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKD 253

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK--HGLTYTADHYACIVDLLARSGR 412
            G +P+   FV VL AC+    + +G Q    I +      T+ A   + ++++ ++ G 
Sbjct: 254 GGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVA---SALLNMYSKCGE 310

Query: 413 FHEAEDVISKMPM-KPDKFLWASLLGGCRIHG 443
              A  +   + + + D  LW  ++     HG
Sbjct: 311 LSIARKIFDDVVISQRDLVLWNGMIAAYAHHG 342


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/437 (36%), Positives = 251/437 (57%), Gaps = 20/437 (4%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           RAL  G  +H+    SG     F +N LL++Y K   +    +   EM    V       
Sbjct: 74  RAL--GASLHALALRSGAFADRFAANALLNLYCK---LPAPPSHSPEMDGSAVV------ 122

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
                   LE  R +FDEMP++D  SW  ++ G     +  EAL L R M   +    + 
Sbjct: 123 --------LESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWR-DGCKPDS 173

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
           FTLSSVL   +    +R G E+HG+  R GF  D  V S+L DMY  C   + + ++FD 
Sbjct: 174 FTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDN 233

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           +  RD + W +M+    Q G  +E   LF  ++ SGI+P   TF+ ++ AC + A+  LG
Sbjct: 234 LPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLG 293

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           KQ+H Y+ R G+D   F +S+L+ MY KCGNV  ++++F+ +  PD+VSWT++I G+A +
Sbjct: 294 KQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALH 353

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G   +AL  F+ +     +P+HI F+ VLTAC+HAGLVDKG +YF+S+ + +G+  + +H
Sbjct: 354 GPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEH 413

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
           +A + D L R G+  EA + IS M +KP   +W++LL  C++H N  LA+  A+ +F++E
Sbjct: 414 HAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLE 473

Query: 460 PENPATYVTMANIYASA 476
           P +  +++ ++N Y+S+
Sbjct: 474 PRSMGSHIILSNTYSSS 490



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 166/350 (47%), Gaps = 23/350 (6%)

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV---LSAVSAIQCLRLGKEI 181
           SW   I           A+ L+  M+  + + +    L+S+   L + +A+    LG  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 182 HGYIMRTGFDSDEVVWSALSDMY--------------GKCGSINEARQIFDKMVDRDVVS 227
           H   +R+G  +D    +AL ++Y              G    +   R++FD+M ++DVVS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W  ++    + GR  E   L  E+ + G +P++FT + VL   A+ A    G ++HG+ T
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           R G+    F  S+L+ MY+ C   + S KVF+ +P  D + W S++AG AQNG  D+AL 
Sbjct: 201 RNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALG 260

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            F  +L SG +P  + F  ++ AC +   +  G Q  H+   + G        + ++D+ 
Sbjct: 261 LFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQ-LHAYVIRGGFDGNVFISSSLIDMY 319

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            + G    A  +  ++   PD   W +++ G  +HG      R A  LF+
Sbjct: 320 CKCGNVSIARRIFDRI-QSPDIVSWTAMIMGHALHG----PAREALVLFD 364



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 157/330 (47%), Gaps = 38/330 (11%)

Query: 10  RLKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EAL ++ ++      P     SS++    +   +  G ++H     +GF   VF+ +
Sbjct: 153 RHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGS 212

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMYA C     +  +FD +  RD   +N+M++G  + GS+++A  LF  M       
Sbjct: 213 SLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRM------- 265

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
              + SG     +P+                    T SS++ A   +  L LGK++H Y+
Sbjct: 266 ---LHSGI----KPMPV------------------TFSSLIPACGNLASLLLGKQLHAYV 300

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +R GFD +  + S+L DMY KCG+++ AR+IFD++   D+VSWTAMI  +   G   E  
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHM 304
            LF  +    ++PN  TF  VL AC+     + G +    M+   G  P     +AL   
Sbjct: 361 VLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADT 420

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLI 333
             + G +E +    +GM  +P    W++L+
Sbjct: 421 LGRPGKLEEAYNFISGMKIKPTASVWSTLL 450



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 115/271 (42%), Gaps = 69/271 (25%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++LH    P P  +SSLI  C    +L  GK++H+++   GF   VFIS+ L+DMY KCG
Sbjct: 264 RMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCG 323

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           N+S A+ +FD +Q  D+ S+  MI G    G   +A  LFD M                 
Sbjct: 324 NVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRM----------------- 366

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                             N   N  T  +VL+A S           H  ++  G+     
Sbjct: 367 ---------------ELGNLKPNHITFLAVLTACS-----------HAGLVDKGWK---- 396

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
            ++++SD YG   S+     + D +            GR    G+ EE +   S +    
Sbjct: 397 YFNSMSDHYGIVPSLEHHAALADTL------------GR---PGKLEEAYNFISGM---K 438

Query: 256 IRPNAFTFAGVLNACADHA----AEELGKQV 282
           I+P A  ++ +L AC  H     AEE+ K++
Sbjct: 439 IKPTASVWSTLLRACKVHKNTVLAEEVAKKI 469


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 253/455 (55%), Gaps = 4/455 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + + +++ C     +E G+++H  +  SG  P V + N +LDMYAKCG+   A+  
Sbjct: 124 PNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRA 183

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M ++D  S+N +I    + G L  A  LFDE   RD  SW  ++SG +R+    EAL
Sbjct: 184 FGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEAL 243

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
              + M     + SN +T S V +    +    LG+++HG ++    + D  V  +L DM
Sbjct: 244 GRLQQMVRAGVTFSN-YTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDM 302

Query: 204 YGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
           Y KCG +  A  IFD+  D       +W+ M+  Y Q GR EE    F  +++ G+    
Sbjct: 303 YCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQ 362

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           F    V +ACA+    E G+QVHG++ ++G+   +  ASA+V MYSK G++E++ ++F  
Sbjct: 363 FILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRS 422

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
               ++  WT+++  YA +G    ALE F  +      P+ I  V VL+AC+H+GLV  G
Sbjct: 423 AQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDG 482

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
             YF+ ++E++G+    +HY C+VDL  R+G   +A++ I +  +  +  +W +LL  CR
Sbjct: 483 YHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACR 542

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +H +++ A+ A+E L ++E  +  +YV M+N+YA+
Sbjct: 543 LHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYAT 577



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 37/376 (9%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVL 166
           L  A  +FD  P R   +WT++ISG  R  +  + +  +  M+     +  N F L+ VL
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR------------ 214
              + +  +  G+ IHG+I+R+G   D V+ +A+ DMY KCG    AR            
Sbjct: 134 RCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDAT 193

Query: 215 -------------------QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
                              Q+FD+   RDV SW  ++    + G   E      +++++G
Sbjct: 194 SWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAG 253

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           +  + +T++ V       ++ +LG+Q+HG +     +  +F   +L+ MY KCG +E++ 
Sbjct: 254 VTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESAL 313

Query: 316 KVFN---GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            +F+           +W++++AGY QNG  ++ALE+F  +L+ G      +   V +AC 
Sbjct: 314 SIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACA 373

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           +AG+V++G Q  H   EK G  + A   + IVD+ ++SG   +A  +      K +  LW
Sbjct: 374 NAGMVEQGRQ-VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTK-NVALW 431

Query: 433 ASLLGGCRIHGNLDLA 448
            ++L     HG   +A
Sbjct: 432 TTMLCSYASHGQGRMA 447


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 270/470 (57%), Gaps = 16/470 (3%)

Query: 8   QRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           ++ L +A   L  I  P PS+  ++SL++   ++  L +  ++   +          +  
Sbjct: 93  RQTLPDAAAALASIPFP-PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LLD     G +++A+ LFDEM +RDV ++  M+SG+ + G + +AR LFDEMP+R+  S
Sbjct: 152 GLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WTAMISGY +  +   A  L+ +M        N+ + +++L  V  IQ   +  E    +
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPE-----RNEVSWTAML--VGYIQAGHV--EDAAEL 258

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
                +      +A+   +G+ G ++ A+ +F+KM +RD  +W+AMI  Y Q     E  
Sbjct: 259 FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           + F E++  G+RPN  +   +L  CA  A  + G++VH  M R  +D   FA SAL+ MY
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMY 378

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCGN++ +K+VF+     D+V W S+I GYAQ+G+ ++AL  F  +  +G  PD I ++
Sbjct: 379 IKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYI 438

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G LTAC++ G V +G + F+S+     +   A+HY+C+VDLL RSG   EA D+I  MP+
Sbjct: 439 GALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV 498

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +PD  +W +L+G CR+H N ++A+ AA+ L E+EP N   YV +++IY S
Sbjct: 499 EPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTS 548



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 184/416 (44%), Gaps = 60/416 (14%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N  +   A+ GNI  A+  F+ M  R   SYN +++G+ +    + A  LF  MP RD  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           S+ A+ISG          L L R  Q   ++ +   ++    S VS    LR G   HG 
Sbjct: 81  SYNALISG----------LSLRR--QTLPDAAAALASIPFPPSVVSFTSLLR-GYVRHGL 127

Query: 185 ------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
                 + +   + + V ++ L       G +NEAR++FD+M DRDVV+WTAM+  Y Q 
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           GR  E  ALF E+ K     N  ++  +++  A +    L +++   M     +    + 
Sbjct: 188 GRITEARALFDEMPKR----NVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSW 239

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD--------------- 343
           +A++  Y + G+VE++ ++FN MP   + +  +++ G+ Q GM D               
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDG 299

Query: 344 ----------------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
                           +AL  F  +L  G +P++   + +LT C    ++D G +  H+ 
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE-VHAA 358

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +          + ++ +  + G   +A+ V      K D  +W S++ G   HG
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG 413


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 262/482 (54%), Gaps = 46/482 (9%)

Query: 5   LCNQ-------RRLKEALQI-----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL 52
           LC Q       +R  EAL++     L+         Y +L+  C   +++   KKV +++
Sbjct: 98  LCGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYM 157

Query: 53  KSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112
            +SG  P  ++ N +L M+ KCG + DA                               R
Sbjct: 158 INSGLDPDEYLRNRVLLMHVKCGMMIDA-------------------------------R 186

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM-QNFENSVSNKFTLSSVLSAVSA 171
            LFDEMP+++  SW  +I G V      EA  L+ MM Q+F ++ S  F   +++ A + 
Sbjct: 187 RLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFV--TMIRASAG 244

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           +  +  G+++H   ++TG   D  V  AL DMY KCGSI +A+ +FD+M ++  V W ++
Sbjct: 245 LGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSI 304

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  Y   G  EE  +++ E+  SG++ + FTF+ ++  CA  A+ E  KQ H  + R G+
Sbjct: 305 IAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGF 364

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                A +ALV +YSK G +E++K VF+ MP  +++SW +LIAGY  +G   +A+E FE 
Sbjct: 365 GLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFER 424

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +L  G  P+H+ F+ VL+AC+++GL D+G + F S+   H +   A HYAC+++LL R G
Sbjct: 425 MLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREG 484

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
              EA  +I   P KP   +WA+LL  CR+H N +L K AAE L+ + PE  + YV + N
Sbjct: 485 LLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLN 544

Query: 472 IY 473
           IY
Sbjct: 545 IY 546



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 178/391 (45%), Gaps = 71/391 (18%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+++HS    +G    VF++  L+DMY+KCG+I DAQ +FD+M E+    +N++I+G+  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G  E+A +++ EM  RD+                                  + FT S 
Sbjct: 311 HGYSEEALSMYYEM--RDS------------------------------GVKIDNFTFSI 338

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           ++   + +  L   K+ H  ++R GF  D V  +AL D+Y K G I +A+ +FD M  ++
Sbjct: 339 IIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKN 398

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           V+SW A+I  Y   GR  E   +F  ++  G+ PN  TF  VL+AC+     + G ++  
Sbjct: 399 VISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFE 458

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
            M+R                           K+     +P  + +  +I    + G+ D+
Sbjct: 459 SMSR-------------------------DHKI-----KPRAMHYACMIELLGREGLLDE 488

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK-HGL-TYTADHYAC 402
           A   F L+  +  +P   ++  +LTAC     V K  +      EK +G+      +Y  
Sbjct: 489 A---FALIKDAPFKPTVNMWAALLTACR----VHKNFELGKFAAEKLYGMGPEKLSNYVV 541

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           ++++  RSGR  EA  VI  +  +  + L A
Sbjct: 542 LLNIYNRSGRLEEAAAVIQTLKRRGLRMLPA 572


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 258/482 (53%), Gaps = 39/482 (8%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQN--RALEEGKKVHSHLKSSGFKP 59
           + I  N   L+  +++L    + +     S ++ C  N   ++E GK +H      G   
Sbjct: 118 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL 177

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            V +   LLD YAK G+                               LE A  +F  MP
Sbjct: 178 DVVVGTALLDTYAKIGD-------------------------------LEDATKIFKLMP 206

Query: 120 QRDNFSWTAMISGYVRYNQPI-----EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
             +   + AMI+G+++          EA+ L+  MQ+      ++FT SS+L A S I+ 
Sbjct: 207 DPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQS-RGMKPSEFTFSSILKACSTIEA 265

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
              GK+IH  I +    SDE + +AL ++Y   GSI +  + F      DVVSWT++I  
Sbjct: 266 FECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVG 325

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           + Q G+ E G  LF EL+ SG +P+ FT + +L+ACA+ AA + G+Q+H Y  + G   +
Sbjct: 326 HVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNF 385

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           +   ++ + MY+KCG+++++   F     PD+VSW+ +I+  AQ+G   +A++ FEL+  
Sbjct: 386 TIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKG 445

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG  P+HI F+GVL AC+H GLV++GL+YF  +K+ HG+T    H ACIVDLL R+GR  
Sbjct: 446 SGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLA 505

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           EAE  I     + D  +W SLL  CR+H   D  KR AE + E+EPE  A+YV + NIY 
Sbjct: 506 EAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYN 565

Query: 475 SA 476
            A
Sbjct: 566 DA 567



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 216/444 (48%), Gaps = 59/444 (13%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S+ +  C +   L  G+ +H+ +  SG    V ++N L+DMY KCG I           
Sbjct: 44  FSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRI----------- 92

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
                               + AR +F+   + D+ SW ++I+GYVR     E L L  +
Sbjct: 93  --------------------DWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVK 132

Query: 148 MMQNFENSVSNKFTLSSVLSAV-----SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           M+++  N   N + L S L A      S+I+C   GK +HG  ++ G D D VV +AL D
Sbjct: 133 MLRHGLN--LNSYALGSALKACGSNFSSSIEC---GKMLHGCAVKLGLDLDVVVGTALLD 187

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA-----LFSELIKSGIR 257
            Y K G + +A +IF  M D +VV + AMI  + Q     + FA     LF E+   G++
Sbjct: 188 TYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMK 247

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+ FTF+ +L AC+   A E GKQ+H  + +       F  +ALV +YS  G++E+  K 
Sbjct: 248 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 307

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+  P+ D+VSWTSLI G+ QNG  +  L  F  LL SG +PD      +L+AC +   V
Sbjct: 308 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 367

Query: 378 DKGLQYFHSIKEKHGL---TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             G Q  H+   K G+   T   +   C   + A+ G    A ++  K    PD   W+ 
Sbjct: 368 KSGEQ-IHAYAIKTGIGNFTIIQNSQIC---MYAKCGDIDSA-NMTFKETKNPDIVSWSV 422

Query: 435 LLGGCRIHGNLDLAKRAAEALFEI 458
           ++     HG    AK A + LFE+
Sbjct: 423 MISSNAQHG---CAKEAVD-LFEL 442



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 168/328 (51%), Gaps = 10/328 (3%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+R+  SW ++ISGY +     E ++L++  +  +  + +KFT S+ LS       LRL
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRL-DKFTFSNALSVCGRTLDLRL 59

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+ IH  I  +G     ++ ++L DMY KCG I+ AR +F+   + D VSW ++I  Y +
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH--AAEELGKQVHGYMTRIGYDPYS 295
            G  +E   L  ++++ G+  N++     L AC  +  ++ E GK +HG   ++G D   
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ-----NGMPDKALEYFE 350
              +AL+  Y+K G++E++ K+F  MP P++V + ++IAG+ Q     +   ++A+  F 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +   G +P    F  +L AC+     + G Q  H+   K+ L         +V+L + S
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNALVELYSLS 298

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGG 438
           G   +        P K D   W SL+ G
Sbjct: 299 GSIEDGLKCFHSTP-KLDVVSWTSLIVG 325


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 259/462 (56%), Gaps = 33/462 (7%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +Q+L+       +   +++  C     L  G+ +H++   +GF  GV  +N LLDMY+KC
Sbjct: 248 IQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKC 307

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
                                          G+L  A  +F +M +    SWT++I+ +V
Sbjct: 308 -------------------------------GNLNGANEVFVKMGETTIVSWTSIIAAHV 336

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           R     EA+ L+  MQ+ +    + + ++SV+ A +    L  G+E+H +I +    S+ 
Sbjct: 337 REGLHYEAIGLFDEMQS-KGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNL 395

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL +MY KCGS+ EA  IF ++  +++VSW  MIG Y Q     E   LF ++ K 
Sbjct: 396 PVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ 455

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
            ++P+  T A VL ACA  AA E G+++HG++ R GY      A ALV MY KCG +  +
Sbjct: 456 -LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLA 514

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +++F+ +P+ D++ WT +IAGY  +G   +A+  FE +  +G +P+   F  +L ACTH+
Sbjct: 515 QQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHS 574

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GL+ +G + F S+K +  +    +HYAC+VDLL RSG    A   I  MP+KPD  +W +
Sbjct: 575 GLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGA 634

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LL GCRIH +++LA++ AE +FE+EPEN   YV +AN+YA A
Sbjct: 635 LLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEA 676



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 160/540 (29%), Positives = 264/540 (48%), Gaps = 90/540 (16%)

Query: 5   LCNQRRLKEALQILH--QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG------ 56
            C    L+ A+++L   Q S    + Y S++Q C + ++LE+GK+VHS + S+G      
Sbjct: 34  FCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEV 93

Query: 57  -------------------------FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
                                        +F+ N L+  YAK GN  ++  LF++MQE  
Sbjct: 94  LGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELG 153

Query: 92  V----------------------C-------------SYN----TMISGFTKGGSLEQAR 112
           +                      C             SYN    ++I+ + K G +E AR
Sbjct: 154 IRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESAR 213

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172
            LFDE+  RD  SW +MISG          L+ +  M N    V +  TL +VL A + +
Sbjct: 214 ILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSA-TLVNVLVACANV 272

Query: 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
             L LG+ +H Y ++ GF    +  + L DMY KCG++N A ++F KM +  +VSWT++I
Sbjct: 273 GNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSII 332

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             + +EG   E   LF E+   G+RP+ +    V++ACA   + + G++VH ++ +    
Sbjct: 333 AAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMG 392

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                ++AL++MY+KCG++E +  +F+ +P  ++VSW ++I GY+QN +P++AL+ F L 
Sbjct: 393 SNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLF-LD 451

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD-HYAC-IVDLLARS 410
           ++   +PD +    VL AC     ++KG +    I  K    Y +D H AC +VD+  + 
Sbjct: 452 MQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRK---GYFSDLHVACALVDMYVKC 508

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPENPA 464
           G    A+ +   +P K D  LW  ++ G  +HG      + A + FE      IEPE  +
Sbjct: 509 GLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHG----FGKEAISTFEKMRVAGIEPEESS 563


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 233/376 (61%), Gaps = 1/376 (0%)

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G  +  + E  R +FDEM +RD  SW  +I G   + +  EAL + R M   +  + + F
Sbjct: 430 GGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWR-DGFMPDTF 488

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TLS+VL   +    ++ G  +HGY ++ GFD+D  V S+L DMY  C  ++ + ++FD  
Sbjct: 489 TLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSF 548

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            D D V W +M+  Y Q G  EE   +F  ++++G+RP   TF+ ++ A  + +   LGK
Sbjct: 549 SDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGK 608

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H Y+ R  ++   F +S+L+ MY KCGNV+ +++VFNG+  PD+VSWT++I GYA +G
Sbjct: 609 QLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 668

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +A   FE +     +P+HI F+ VLTAC+HAGLVD G +YF+S+  ++G   + +H 
Sbjct: 669 PTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHC 728

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           A + D L R+G   EA + IS+M +KP   +W++LL  CR+H N  LA+  A+ +FE+EP
Sbjct: 729 AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEP 788

Query: 461 ENPATYVTMANIYASA 476
           ++  ++V ++N+Y+++
Sbjct: 789 KSMGSHVILSNMYSAS 804



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 161/332 (48%), Gaps = 38/332 (11%)

Query: 8   QRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
            +R +EAL ++ ++      P     S+++    +   ++ G  VH +   +GF   VF+
Sbjct: 465 HKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFV 524

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            + L+DMYA C  +  +  +FD   + D   +N+M++G+ + GS+E+A  +F        
Sbjct: 525 GSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIF-------- 576

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
                                  RM+Q     V    T SS++ A   +  LRLGK++H 
Sbjct: 577 ----------------------RRMLQAGVRPV--PVTFSSLIPAFGNLSLLRLGKQLHA 612

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R  F+ +  + S+L DMY KCG+++ AR++F+ +   D+VSWTAMI  Y   G   E
Sbjct: 613 YLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTE 672

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALV 302
            F LF  +    ++PN  TF  VL AC+     + G +    M+ + G+ P     +AL 
Sbjct: 673 AFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALA 732

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLI 333
               + G+++ +    + M  +P    W++L+
Sbjct: 733 DTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 764


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 219/365 (60%), Gaps = 1/365 (0%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  +F ++   + F+W  MI GY     P+ AL+LYR M +      +  T   +L A++
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQM-HVSCIEPDTHTYPFLLKAIA 151

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
            +  +R G+++H   +R GF+S   V + L  MY  CG    A ++F+ M +R++V+W +
Sbjct: 152 KLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNS 211

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           +I  Y   GR  E   LF E+   G+ P+ FT   +L+ACA+  A  LG++ H YM ++G
Sbjct: 212 VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG 271

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
            D    A +AL+ +Y+KCG++  + KVF+ M    +VSWTSLI G A NG   +ALE F+
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            L + G  P  I FVGVL AC+H G+VD+G  YF  +KE++G+    +HY C+VDLL R+
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 391

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   +A + I  MPM+P+  +W +LLG C IHG+L L + A   L ++EP++   YV ++
Sbjct: 392 GLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLS 451

Query: 471 NIYAS 475
           N+YAS
Sbjct: 452 NLYAS 456



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 40/322 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  L++   +   + EG+KVHS    +GF+  VF+ N L+ MYA CG+   A  L
Sbjct: 138 PDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKL 197

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M ER++ ++N++I+G+   G   +A  LF EM               +R  +P    
Sbjct: 198 FELMAERNLVTWNSVINGYALNGRPNEALTLFREMG--------------LRGVEP---- 239

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         + FT+ S+LSA + +  L LG+  H Y+++ G D +    +AL D+
Sbjct: 240 --------------DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDL 285

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGSI +A ++FD+M ++ VVSWT++I      G  +E   LF EL + G+ P+  TF
Sbjct: 286 YAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITF 345

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI----GYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            GVL AC+     + G     Y  R+    G  P       +V +  + G V+ + +   
Sbjct: 346 VGVLYACSHCGMVDEG---FDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQ 402

Query: 320 GMP-RPDLVSWTSLIAGYAQNG 340
            MP +P+ V W +L+     +G
Sbjct: 403 NMPMQPNAVVWRTLLGACTIHG 424



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 9/302 (2%)

Query: 179 KEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           ++IH + +R G    + ++    +  +   C  ++ A QIF ++ + ++ +W  MI  Y 
Sbjct: 57  RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYA 116

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           +         L+ ++  S I P+  T+  +L A A       G++VH    R G++   F
Sbjct: 117 ESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVF 176

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             + LVHMY+ CG+ E++ K+F  M   +LV+W S+I GYA NG P++AL  F  +   G
Sbjct: 177 VQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRG 236

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD    V +L+AC   G +  G +  H    K GL         ++DL A+ G   +A
Sbjct: 237 VEPDGFTMVSLLSACAELGALALG-RRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYA 474
             V  +M  K     W SL+ G  ++G     K A E   E+E +   P+    +  +YA
Sbjct: 296 HKVFDEMEEK-SVVSWTSLIVGLAVNG---FGKEALELFKELERKGLMPSEITFVGVLYA 351

Query: 475 SA 476
            +
Sbjct: 352 CS 353



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 14/259 (5%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EAL +  ++      P      SL+  C +  AL  G++ H ++   G    +   N
Sbjct: 221 RPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGN 280

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---- 121
            LLD+YAKCG+I  A  +FDEM+E+ V S+ ++I G    G  ++A  LF E+ ++    
Sbjct: 281 ALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMP 340

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
              ++  ++          E  D ++ M+  E  +  K      +  V  +    L K+ 
Sbjct: 341 SEITFVGVLYACSHCGMVDEGFDYFKRMKE-EYGIVPKIEHYGCM--VDLLGRAGLVKQA 397

Query: 182 HGYIMRTGFDSDEVVWSAL---SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           H +I       + VVW  L     ++G       AR    ++  +    +  +   Y  E
Sbjct: 398 HEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASE 457

Query: 239 GRREEGFALFSELIKSGIR 257
            R  +   +   +++ G++
Sbjct: 458 QRWSDVHKVRRTMLREGVK 476


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 237/418 (56%), Gaps = 32/418 (7%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMM 149
           DV   N  +  ++  GS+  AR LFDE P RD  SW  +I GYVR   P EAL+L+ R++
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           ++ +    ++ T+   +S  + +  L LGK +H ++   G      + +A+ DMY KCGS
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 210 IN-------------------------------EARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +                                +AR +FD+M +RDV  W A++  Y Q 
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            + +E  ALF E+ +S + PN  T   +L+AC+   A E+G  VH Y+ R          
Sbjct: 335 KQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALG 394

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++LV MY+KCGN++ +  +F  +P  + ++WT++I G A +G  D+A+EYF+ ++  G Q
Sbjct: 395 TSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ 454

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD I F+GVL+AC HAGLV +G Q+F  + EK+ L     HY+C++DLL R+G   EAE 
Sbjct: 455 PDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQ 514

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +++ MPM PD  +W +L   CR+HGN+ L ++AA  L E++P +   YV +AN+YA A
Sbjct: 515 LVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEA 572



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 162/339 (47%), Gaps = 35/339 (10%)

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L LYR +    ++  +  T   +L A + +Q    G  + G++ + GF +D  V +A   
Sbjct: 105 LPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVH 164

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNA 260
            +   GS+  AR++FD+   RDVVSW  +IG Y + G   E   LF  L++ G  +RP+ 
Sbjct: 165 FWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDE 224

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV--- 317
            T  G ++ CA     ELGK++H ++   G        +A++ MY KCG++E +K V   
Sbjct: 225 VTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFER 284

Query: 318 ----------------------------FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                                       F+ MP  D+  W +L+AGY QN    +A+  F
Sbjct: 285 IDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALF 344

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             + +S   P+ I  V +L+AC+  G ++ G+   H I ++H L  +      +VD+ A+
Sbjct: 345 HEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYI-DRHQLYLSVALGTSLVDMYAK 403

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            G   +A  +  ++P K +   W +++ G   HG+ D A
Sbjct: 404 CGNIKKAICIFKEIPDK-NALTWTAMICGLANHGHADEA 441



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 8/213 (3%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           L  S  RP+  TF  +L ACA       G  V G++ ++G+    F  +A VH +S  G+
Sbjct: 112 LCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGS 171

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVL 368
           +  ++++F+  P  D+VSW +LI GY ++G+P +ALE F  L++ G   +PD +  +G +
Sbjct: 172 MVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAV 231

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           + C   G ++ G +  H   +  G+  T      ++D+  + G    A+ V  ++  K  
Sbjct: 232 SGCAQMGDLELG-KRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNK-T 289

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
              W +++ G   H  L + +  A  LF+  PE
Sbjct: 290 VVSWTTMIVG---HARLGMMED-ARMLFDEMPE 318


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 263/470 (55%), Gaps = 30/470 (6%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           + R L+  LQ+      P+    SS+++ C    A   G+++H  +  +      F++  
Sbjct: 287 DHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG 346

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAK G + DA+ +FD M  RD+  +N +ISG +  G   +  +LF  M +      
Sbjct: 347 LVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRK------ 400

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                         E LDL            N+ TL+SVL + ++ + +   +++H    
Sbjct: 401 --------------EGLDLD----------VNRTTLASVLKSTASSEAICHTRQVHALAE 436

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G  SD  V + L D Y KCG ++ A ++F +    D++S T M+    Q    E+   
Sbjct: 437 KIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIK 496

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++++ G+ P++F  + +LNAC   +A E GKQVH ++ +  +    FA +ALV+ Y+
Sbjct: 497 LFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYA 556

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E++   F+G+P   +VSW+++I G AQ+G   +AL+ F  +L  G  P+HI    
Sbjct: 557 KCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTS 616

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC HAGLVD   +YF S+KE  G+  T +HYAC++D+L R+G+  +A ++++ MP +
Sbjct: 617 VLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQ 676

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +  +W +LLG  R+H + +L + AAE LF +EPE   T+V +AN YASA
Sbjct: 677 ANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASA 726



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/423 (33%), Positives = 205/423 (48%), Gaps = 56/423 (13%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           +I S+L +F   +R+L  G  +HSHL  SG   G   SN LL +Y++C   S        
Sbjct: 6   TIGSALARF-GTSRSLFAGAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPS-------- 54

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                                   AR +FDE+P   + SW+++++ Y     P +AL  +
Sbjct: 55  -----------------------AARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAF 91

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           R M+       N+F L  VL     +   R G ++H   + T    D  V +AL  +YG 
Sbjct: 92  RAMRG-RGVPCNEFALPVVLKCAPDV---RFGAQVHALAVATRLVHDVFVANALVAVYGG 147

Query: 207 CGSINEARQIFDKMV----DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            G ++EAR++FD+ V    +R+ VSW  MI  Y +  +  +   +F E++ SG RPN F 
Sbjct: 148 FGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFG 207

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F+ V+NAC      E G+QVHG + R GY+   F A+ALV MYSK G++E +  VF  MP
Sbjct: 208 FSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMP 267

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D+VSW + I+G   +G   +ALE    +  SG  P+      VL AC  AG  + G Q
Sbjct: 268 AADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQ 327

Query: 383 YFHSIKEKHGLTYTA----DHYACI--VDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                   HG    A    D +  +  VD+ A+ G   +A  V   MP + D  LW +L+
Sbjct: 328 I-------HGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRR-DLILWNALI 379

Query: 437 GGC 439
            GC
Sbjct: 380 SGC 382



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 230/458 (50%), Gaps = 46/458 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +S ++  C  +R LE G++VH  +  +G++  VF +N L+DMY+K G+I  A T+
Sbjct: 203 PNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATV 262

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F++M   DV S+N                               A ISG V +     AL
Sbjct: 263 FEKMPAADVVSWN-------------------------------AFISGCVTHGHDHRAL 291

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L   M++    V N FTLSSVL A +      LG++IHG++++   D DE V   L DM
Sbjct: 292 ELLLQMKS-SGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDM 350

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNAF 261
           Y K G +++AR++FD M  RD++ W A+I     +GR  E  +LF  + K G  +  N  
Sbjct: 351 YAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRT 410

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T A VL + A   A    +QVH    +IG    S   + L+  Y KCG ++ + KVF   
Sbjct: 411 TLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKES 470

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D++S T+++   +Q    + A++ F  +L+ G +PD  V   +L ACT     ++G 
Sbjct: 471 RSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGK 530

Query: 382 Q-YFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           Q + H IK +    +T+D +A   +V   A+ G   +A+   S +P +     W++++GG
Sbjct: 531 QVHAHLIKRQ----FTSDVFAGNALVYAYAKCGSIEDADMAFSGLPER-GIVSWSAMIGG 585

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPA-TYVTMANIYAS 475
              HG+    KRA +    +  E  A  ++T+ ++ ++
Sbjct: 586 LAQHGH---GKRALDLFHRMLDEGVAPNHITLTSVLSA 620



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 191/389 (49%), Gaps = 42/389 (10%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQPIEALDLY 146
           DV   N +++ +   G +++AR +FDE      +R+  SW  MIS YV+ +Q  +A+ ++
Sbjct: 134 DVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVF 193

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           R M  +     N+F  S V++A +  + L  G+++HG ++RTG++ D    +AL DMY K
Sbjct: 194 REMV-WSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSK 252

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G I  A  +F+KM   DVVSW A I      G       L  ++  SG+ PN FT + V
Sbjct: 253 LGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSV 312

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L ACA   A  LG+Q+HG+M +   D   F A  LV MY+K G +++++KVF+ MPR DL
Sbjct: 313 LKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDL 372

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTACTHAGLVDKGLQYF 384
           + W +LI+G + +G   + L  F  + K G   D        VL +   +  +    Q  
Sbjct: 373 ILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQ-V 431

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEA---------EDVISKMPM---------- 425
           H++ EK GL   +     ++D   + G+   A         +D+IS   M          
Sbjct: 432 HALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHG 491

Query: 426 ---------------KPDKFLWASLLGGC 439
                          +PD F+ +SLL  C
Sbjct: 492 EDAIKLFVQMLRKGLEPDSFVLSSLLNAC 520



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 20/306 (6%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T+ S L+     + L  G  +H +++++G  +     + L  +Y +C   + AR +FD++
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEI 63

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            D   VSW++++  Y   G   +    F  +   G+  N F    VL    D      G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---VRFGA 120

Query: 281 QVHGY--MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-----GMPRPDLVSWTSLI 333
           QVH     TR+ +D   F A+ALV +Y   G V+ ++++F+     G  R + VSW ++I
Sbjct: 121 QVHALAVATRLVHD--VFVANALVAVYGGFGMVDEARRMFDEYVGVGGER-NAVSWNTMI 177

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           + Y +N     A+  F  ++ SG +P+   F  V+ ACT +  ++ G Q  H    + G 
Sbjct: 178 SAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ-VHGAVVRTGY 236

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
                    +VD+ ++ G    A  V  KMP   D   W + + GC  HG+     RA E
Sbjct: 237 EKDVFTANALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTHGH---DHRALE 292

Query: 454 ALFEIE 459
            L +++
Sbjct: 293 LLLQMK 298


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 270/525 (51%), Gaps = 77/525 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++ +  C +   L  G+ VH+     G   GVF+SN L+ MY+KCG + +A+ +FD  +
Sbjct: 112 YAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAE 171

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---------------------------- 120
           ERD  S+N+++SG+ + G+ E+   +F  M +                            
Sbjct: 172 ERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIA 231

Query: 121 -------------RDNFSWTAMISGYVRYNQPIEALDLYRMMQN-----FENSVS----- 157
                         D F  +AMI  Y +    +EA  L+R +Q      F   ++     
Sbjct: 232 EAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRT 291

Query: 158 --------------------------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
                                      +FT SSVL A +    L  GK+IHG +++  F 
Sbjct: 292 ETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQ 351

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            D+ + SAL D+Y   G + +  + F      D+V+WTAM+    Q    E+  +LF E 
Sbjct: 352 EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHES 411

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           + +G++P+ FT + V+NACA  A    G+Q+  + T+ G+D ++   ++ VHMY++ G+V
Sbjct: 412 LGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDV 471

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           + + + F  M   D+VSW+++I+ +AQ+G    AL +F+ ++ +   P+ I F+GVLTAC
Sbjct: 472 DAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTAC 531

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           +H GLVD+GL+Y+ ++ + +GL+ T  H  C+VDLL R+GR  +AE  IS      D  +
Sbjct: 532 SHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVI 591

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W SLL  CRIH +L+  +  A  + E+EP + A+YV + N+Y  A
Sbjct: 592 WRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDA 636



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 176/355 (49%), Gaps = 17/355 (4%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           NT+++ + + G    AR L DEMP+R+  S+  +I  Y R  + +  L L  + +     
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSR--EGLAPLSLETLARARRAG 104

Query: 156 VS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           V  ++F+ ++ L+A S    LR G+ +H   +  G  S   V ++L  MY KCG + EAR
Sbjct: 105 VDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEAR 164

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH- 273
           ++FD   +RD VSW +++  Y + G REE   +F+ + + G+  N+F    V+  C+   
Sbjct: 165 RVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRG 224

Query: 274 -AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
               ++ + VHG + + G D   F  SA++ MY+K G +  +  +F  +  P++V + ++
Sbjct: 225 DGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTM 284

Query: 333 IAGYAQN------GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           IAG+ +        +  +AL  +  +   G QP    F  VL AC  AG ++ G Q    
Sbjct: 285 IAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQ 344

Query: 387 IKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           + +    T+  D +  + ++DL   SG   +        P K D   W +++ GC
Sbjct: 345 VIK---YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGC 395



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 158/328 (48%), Gaps = 38/328 (11%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      P+   +SS+++ C     LE GK++H  +    F+   FI + L+
Sbjct: 302 EALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALI 361

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           D+Y   G + D    F    + D+ ++  M+SG  +    E+A +LF E          +
Sbjct: 362 DLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHE----------S 411

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           + +G     +P    DL              FT+SSV++A +++   R G++I  +  ++
Sbjct: 412 LGAGL----KP----DL--------------FTISSVMNACASLAVARAGEQIQCFATKS 449

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GFD   V+ ++   MY + G ++ A + F +M   DVVSW+A+I  + Q G   +    F
Sbjct: 450 GFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFF 509

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSK 307
            E++ + + PN  TF GVL AC+     + G + +  MT+  G  P     + +V +  +
Sbjct: 510 DEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGR 569

Query: 308 CGNVENSKK-VFNGMPRPDLVSWTSLIA 334
            G + +++  + N +   D V W SL+A
Sbjct: 570 AGRLADAEAFISNSIFHADPVIWRSLLA 597



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y + G    AR++ D+M  R+ VS+  +I  Y +EG         +   ++G+  + F++
Sbjct: 53  YCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSY 112

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A  L AC+       G+ VH      G     F +++LV MYSKCG +  +++VF+    
Sbjct: 113 AAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEE 172

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-Q 382
            D VSW SL++GY + G  ++ +  F ++ + G   +      V+  C+  G     + +
Sbjct: 173 RDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAE 232

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-CR 440
             H    K GL       + ++D+ A+ G   EA  +   +  +P+  ++ +++ G CR
Sbjct: 233 AVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSV-QEPNVVMFNTMIAGFCR 290



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 20/208 (9%)

Query: 6   CNQRRLKE-ALQILHQI--SHPSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           C Q  L E AL + H+   +   P ++  SS++  C        G+++      SGF   
Sbjct: 395 CVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRF 454

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
             + N  + MYA+ G++  A   F EM+  DV S++ +IS   + G    A + FDEM  
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 121 R----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL- 175
                +  ++  +++         E L  Y  M       +  + LS  +   + +  L 
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETM-------TKDYGLSPTIKHCTCVVDLL 567

Query: 176 -RLGK--EIHGYIMRTGFDSDEVVWSAL 200
            R G+  +   +I  + F +D V+W +L
Sbjct: 568 GRAGRLADAEAFISNSIFHADPVIWRSL 595



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 139/348 (39%), Gaps = 54/348 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+  N   +++  +            +++++  C QN   E+   +      +G KP +
Sbjct: 361 IDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDL 420

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ--------ERDVCSYNTMISGFTKGGSLEQARN 113
           F  + +++    C +++ A+   +++Q        +R     N+ +  + + G ++ A  
Sbjct: 421 FTISSVMN---ACASLAVARA-GEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATR 476

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
            F EM   D  SW+A+IS + ++    +AL  +  M +    V N+ T   VL+A S   
Sbjct: 477 RFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD-AKVVPNEITFLGVLTACS--- 532

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
                   HG ++  G       +  ++  YG   +I     + D            ++G
Sbjct: 533 --------HGGLVDEGLR----YYETMTKDYGLSPTIKHCTCVVD------------LLG 568

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
           R    GR  +  A  S  I      +   +  +L +C  H   E G+ V   +  +  +P
Sbjct: 569 R---AGRLADAEAFISNSI---FHADPVIWRSLLASCRIHRDLERGQLVANRIMEL--EP 620

Query: 294 YSFAASALVH-MYSKCGNVENSKKVFN-----GMPRPDLVSWTSLIAG 335
            S A+  +++ MY   G +  + K  +     G+ +   +SW  L  G
Sbjct: 621 TSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCG 668


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 264/468 (56%), Gaps = 7/468 (1%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           RL +AL++  ++S      ++S+I+ C     L    ++   +     +  V     +++
Sbjct: 58  RLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMP----EKNVISWTTMVN 113

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y K G +  AQ LF +M  +DV ++N M+ G+ + G +E+   LF+EMP RD  SWT+M
Sbjct: 114 GYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSM 173

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           I G     +  EAL +++ M    + V   + T + VLSA +      LG ++HG++++ 
Sbjct: 174 IGGLDLNGKSEEALFVFKKM--LRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKL 231

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G    E +  +L   Y  C  I  A +IF++ + ++VV WTA++  Y    + ++   +F
Sbjct: 232 GCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVF 291

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++ K G  PN  TF+  L AC    A + GK++H    ++G +   F  ++LV MY++C
Sbjct: 292 GDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTEC 351

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GNV ++  VF  +   D+VSW S+I G AQ+G    AL +F  +++ G  P+ I F G+L
Sbjct: 352 GNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLL 411

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+ +G++ KG  +F  I           HYAC+VD+L R G+  EAE+++  MP+K +
Sbjct: 412 SACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKAN 471

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W +LL  CR+H NL++A+RAA+ + ++EP   + YV ++NIYASA
Sbjct: 472 SMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASA 519



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 178/367 (48%), Gaps = 11/367 (2%)

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           +  A+ +FD++   ++  Y  MI+G+T+   L  A  LFD M  RD  SW +MI G +  
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDC 87

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
                A  L+  M   +N +S    ++  L         RL  ++H          D   
Sbjct: 88  GNLGMATRLFDEMPE-KNVISWTTMVNGYLKFGRVELAQRLFLDMH--------VKDVAA 138

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
           W+A+   Y + G + E  ++F++M  RDV+SWT+MIG     G+ EE   +F ++++SG+
Sbjct: 139 WNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGV 198

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
            P   TFA VL+ACA+     LG QVHG++ ++G   + F + +L+  Y+ C  +E++ K
Sbjct: 199 EPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHK 258

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +FN     ++V WT+L+  Y  N     AL  F  + K G  P+   F   L AC     
Sbjct: 259 IFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEA 318

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +DKG +  H++  K GL         +V +    G  + A  V   +  K D   W S++
Sbjct: 319 LDKG-KEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEK-DIVSWNSII 376

Query: 437 GGCRIHG 443
            G   HG
Sbjct: 377 VGSAQHG 383


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 270/470 (57%), Gaps = 12/470 (2%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           A ++  +   PS  +++++I+    +    +  +++S +++SG  P  F   C+L     
Sbjct: 122 ARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLK---A 178

Query: 74  CGNISDAQT-------LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           C  +   +        +F    E DV   N +++ + K G +EQAR +F+ +  R+  SW
Sbjct: 179 CSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSW 238

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T+MISGY +   P+EAL ++  M+   N   +   L SVL A + ++ L  GK IHG ++
Sbjct: 239 TSMISGYGQNGLPMEALRIFGQMRQ-RNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVV 297

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G + +  +  +L+ MY KCG +  AR  FD+M   +V+ W AMI  Y + G   E   
Sbjct: 298 KMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVG 357

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF E+I   IR ++ T    + ACA   + +L K +  Y+ +  Y    F  +AL+ M++
Sbjct: 358 LFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFA 417

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG+V+ +++VF+     D+V W+++I GY  +G    A++ F  + ++G  P+ + FVG
Sbjct: 418 KCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVG 477

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +LTAC H+GLV++G + FHS+K  +G+     HYAC+VDLL RSG  +EA D I+ MP++
Sbjct: 478 LLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIE 536

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P   +W +LLG C+I+ ++ L + AAE LF ++P N   YV ++N+YAS+
Sbjct: 537 PGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASS 586



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 179/340 (52%), Gaps = 7/340 (2%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G +  AR +FDE P+   F W A+I GY  +N   +A+++Y  MQ       + FTL  V
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQA-SGVNPDGFTLPCV 175

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L A S +  L +GK +HG I R GF+SD  V + L  +Y KCG + +AR +F+ + DR++
Sbjct: 176 LKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNI 235

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSWT+MI  Y Q G   E   +F ++ +  ++P+      VL A  D    E GK +HG 
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGC 295

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + ++G +       +L  MY+KCG V  ++  F+ M  P+++ W ++I+GYA+NG  ++A
Sbjct: 296 VVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEA 355

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CI 403
           +  F+ ++    + D I     + AC   G +D        I +     Y  D +    +
Sbjct: 356 VGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTE---YRNDVFVNTAL 412

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +D+ A+ G    A +V  +  +  D  +W++++ G  +HG
Sbjct: 413 IDMFAKCGSVDLAREVFDRT-LDKDVVVWSAMIVGYGLHG 451



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 136/259 (52%), Gaps = 2/259 (0%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           +IH  ++ +G      + +   +     G I  AR++FD+  +  V  W A+I  Y    
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              +   ++S +  SG+ P+ FT   VL AC+     E+GK+VHG + R+G++   F  +
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            LV +Y+KCG VE ++ VF G+   ++VSWTS+I+GY QNG+P +AL  F  + +   +P
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP 268

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D I  V VL A T    +++G +  H    K GL +  D    +  + A+ G+   A   
Sbjct: 269 DWIALVSVLRAYTDVEDLEQG-KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSF 327

Query: 420 ISKMPMKPDKFLWASLLGG 438
             +M + P+  +W +++ G
Sbjct: 328 FDQMEI-PNVMMWNAMISG 345


>gi|302809332|ref|XP_002986359.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
 gi|300145895|gb|EFJ12568.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
          Length = 516

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/500 (33%), Positives = 268/500 (53%), Gaps = 46/500 (9%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L++L    +P  + Y+SL++ C ++RAL  GK+VHSH+ + G      + + L+ MY KC
Sbjct: 15  LEVLED--NPGKATYASLLRQCGRSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKC 72

Query: 75  GNISDAQTLFDEMQERDVCS--------YNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
            ++ DA+  F+ +  RD+ S        +N++++ + K G ++ AR+LFD M  R   SW
Sbjct: 73  RSLGDARDAFERLAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASW 132

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            AMI+GY   +   EA DL+R + + E    +  T  ++L A S  + +  G+ IH  + 
Sbjct: 133 NAMIAGYAHLDLGDEAFDLFRCI-DLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVA 191

Query: 187 RTGFDSDEVVWSALSDMYGKCG-----------------------------SINEARQIF 217
             G DS+ V+ +AL DMY KCG                             S++EAR  F
Sbjct: 192 ALGLDSNLVLATALLDMYAKCGSIEGARSVFASMADNKNQNSIINMYARCGSLDEARACF 251

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D M  R VVSW  ++  Y ++ + EE   L   +   GI PNAFTF+ V  AC+      
Sbjct: 252 DSMPRRSVVSWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLR 311

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-----PRPDLVSWTSL 332
            G+  H  +   G+D      +AL+ MY +CG+VE +++ F+ M      R D+VSW ++
Sbjct: 312 AGRAAHSRIVASGFDTDRVVVTALMDMYGRCGSVEAARRTFDDMRRRCSTRVDVVSWNAM 371

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           +  Y+ +G P +ALE F  +  +G   + +    VL ACTHAGLV   ++      E  G
Sbjct: 372 MGLYSHHGQPREALELFGEMGLAGEAGNEVSLTLVLHACTHAGLVADAVEALARGVEA-G 430

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +  + +HYAC+VD+LAR+G+   AE+V++ MP++P    W  LLG C +HG+      AA
Sbjct: 431 IVPSREHYACVVDVLARAGKLEVAEEVMNNMPVEPGIGAWKCLLGACAVHGDAGRGSSAA 490

Query: 453 EALFEIEPENPATYVTMANI 472
           + + E++P N A YV ++NI
Sbjct: 491 QHVVEMQPTNAAPYVLLSNI 510


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 264/473 (55%), Gaps = 41/473 (8%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R++EA ++   ++  +   ++++I    QN  L+  +K+   +     +  V   N ++ 
Sbjct: 116 RIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP----EKNVASWNSVVT 171

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISG---------------------------- 101
            Y  C  +S+A+ LFD+M ER+  S+  MISG                            
Sbjct: 172 GYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTRNEYSWTT 231

Query: 102 ----FTKGGSLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
               F + G L+ A  L++ +P++ N  SW AMI+G+V+  +  EAL+L   +     SV
Sbjct: 232 MIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHR-SGSV 290

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            +  + +S LSA + I  + +G+ IH   ++TG   +  V + L  MY KCG++ +   +
Sbjct: 291 PSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHV 350

Query: 217 FD--KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           F   +M  RDVVSWTA+I  Y Q G  E    LF +++  GI+PN  T   +L+AC +  
Sbjct: 351 FRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLG 410

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A +LG+Q H  + ++G+D + F  ++L+ MY KCG  E+   VF  MP  DL++W +++ 
Sbjct: 411 AIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLV 469

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G AQNG+  +A++ FE +   G  PD + F+GVL AC+HAGLVD+G  +F+S+ +K+G+ 
Sbjct: 470 GCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIM 529

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
               HY C+VDLL R+G   EAE +I  MP+KPD  +W +LLG CRIH N +L
Sbjct: 530 PLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNNEL 582



 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 239/467 (51%), Gaps = 29/467 (6%)

Query: 6   CNQR--------RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           CN R        R++EA ++ +++       ++S+I    QN  ++E + +         
Sbjct: 42  CNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI 101

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +        LL  YAK G I +A+ +F+ M ER+V S+N MISG+ + G L+ AR LFDE
Sbjct: 102 RTWTI----LLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDE 157

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+++  SW ++++GY    +  EA +L+  M    NSVS    +S  +      +    
Sbjct: 158 MPEKNVASWNSVVTGYCHCYRMSEARELFDQMPE-RNSVSWMVMISGYVHISDYWE---- 212

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYF 236
             ++   + RT    +E  W+ +   + +CG +++A Q+++++ ++ +  SW AMI  + 
Sbjct: 213 AWDVFVKMCRT---RNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFV 269

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           Q     E   L  EL +SG  P+  +F   L+ACA+    E+G+ +H    + G    S+
Sbjct: 270 QNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSY 329

Query: 297 AASALVHMYSKCGNVENSKKVFNG--MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
             + L+ MY+KCGNVE+   VF    MP+ D+VSWT++I+ Y Q G  + AL+ F  +L 
Sbjct: 330 VMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLA 389

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
            G +P+ +    +L+AC + G +  G Q FH++  K G          ++ +  + G + 
Sbjct: 390 RGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLGFDTFLFVGNSLITMYFKCG-YE 447

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           +   V  +MP + D   W ++L GC  +G   L K A +   ++E E
Sbjct: 448 DGFCVFEEMP-EHDLITWNAVLVGCAQNG---LGKEAIKIFEQMEVE 490


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 251/447 (56%), Gaps = 33/447 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S+   C  +R +  G+ VHS    + F       N LLDMY+KC                
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC---------------- 344

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A+ +F EM  R   S+T+MI+GY R     EA+ L+  M+
Sbjct: 345 ---------------GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    + +T+++VL+  +  + L  GK +H +I       D  V +AL DMY KCGS+
Sbjct: 390 E-EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 448

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNA 269
            EA  +F +M  +D++SW  +IG Y +     E  +LF+ L++     P+  T A VL A
Sbjct: 449 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA  +A + G+++HGY+ R GY      A++LV MY+KCG +  +  +F+ +   DLVSW
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T +IAGY  +G   +A+  F  + ++G + D I FV +L AC+H+GLVD+G ++F+ ++ 
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +  +  T +HYACIVD+LAR+G   +A   I  MP+ PD  +W +LL GCRIH ++ LA+
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688

Query: 450 RAAEALFEIEPENPATYVTMANIYASA 476
           + AE +FE+EPEN   YV MANIYA A
Sbjct: 689 KVAEKVFELEPENTGYYVLMANIYAEA 715



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 215/413 (52%), Gaps = 34/413 (8%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           P    S++Q C  +++L++GK+V + ++ +GF     + + L  MY  CG++ +A  +FD
Sbjct: 94  PRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFD 153

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
           E++      +N +++   K G    +  LF +M          M SG       +E    
Sbjct: 154 EVKIEKALFWNILMNELAKSGDFSGSIGLFKKM----------MSSG-------VEM--- 193

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
                       + +T S V  + S+++ +  G+++HG+I+++GF     V ++L   Y 
Sbjct: 194 ------------DSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYL 241

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           K   ++ AR++FD+M +RDV+SW ++I  Y   G  E+G ++F +++ SGI  +  T   
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           V   CAD     LG+ VH    +  +       + L+ MYSKCG+++++K VF  M    
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VS+TS+IAGYA+ G+  +A++ FE + + G  PD      VL  C    L+D+G +   
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            IKE + L +       ++D+ A+ G   EAE V S+M +K D   W +++GG
Sbjct: 422 WIKE-NDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 214/409 (52%), Gaps = 43/409 (10%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           R++  G+++H  +  SGF     + N L+  Y K   +  A+ +FDEM ERDV S+N++I
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
           +G+   G  E+  ++F +M          ++SG       IE +DL              
Sbjct: 269 NGYVSNGLAEKGLSVFVQM----------LVSG-------IE-IDLA------------- 297

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T+ SV +  +  + + LG+ +H   ++  F  ++   + L DMY KCG ++ A+ +F +
Sbjct: 298 -TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFRE 356

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M DR VVS+T+MI  Y +EG   E   LF E+ + GI P+ +T   VLN CA +   + G
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416

Query: 280 KQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           K+VH ++    +G+D   F ++AL+ MY+KCG+++ ++ VF+ M   D++SW ++I GY+
Sbjct: 417 KRVHEWIKENDLGFDI--FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474

Query: 338 QNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           +N   ++AL  F LLL+     PD      VL AC      DKG +  H    ++G  Y 
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNG--YF 531

Query: 397 ADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +D +    +VD+ A+ G    A  +   +  K D   W  ++ G  +HG
Sbjct: 532 SDRHVANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMHG 579



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 162/332 (48%), Gaps = 17/332 (5%)

Query: 151 NFENSV-----SNKF-----TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           N EN+V     S K+     TL SVL   +  + L+ GKE+  +I   GF  D  + S L
Sbjct: 76  NLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKL 135

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
           S MY  CG + EA ++FD++     + W  ++    + G       LF +++ SG+  ++
Sbjct: 136 SLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDS 195

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +TF+ V  + +   +   G+Q+HG++ + G+   +   ++LV  Y K   V++++KVF+ 
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDE 255

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   D++SW S+I GY  NG+ +K L  F  +L SG + D    V V   C  + L+  G
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            +  HSI  K   +        ++D+ ++ G    A+ V  +M  +     + S++ G  
Sbjct: 316 -RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS-VVSYTSMIAGYA 373

Query: 441 IHGNLDLAKRAAEALFEIEPE--NPATYVTMA 470
             G   LA  A +   E+E E  +P  Y   A
Sbjct: 374 REG---LAGEAVKLFEEMEEEGISPDVYTVTA 402


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/397 (38%), Positives = 239/397 (60%), Gaps = 14/397 (3%)

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A+ LFD+M ERD+ S+N M++G+ +   L+ AR LF+ MP+RD  SW AM+SGY +    
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFV 73

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            EA +++  M      + N  + + +L+A   +Q  R+  E    +  +  D   V W+ 
Sbjct: 74  DEAREIFYKM-----PLKNGISWNGLLAAY--VQNGRI--EDAKRLFESKMDWTLVSWNC 124

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L       G + + R +FD M  RD +SW+AMI  Y Q G  EE    F E+ +   R N
Sbjct: 125 LMG-----GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLN 179

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             +F   L+ C++ AA ELG+Q+H  + + GY    +  +AL+ MY KCG+++ ++  F 
Sbjct: 180 RSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQ 239

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            +   D+VSW ++I GYA++G  ++AL  FEL+  +G +PD    V VL AC+HAGLVD+
Sbjct: 240 EILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQ 299

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G +YF+S+   +G+T    HY C+VDLL R+G+  EA++++  MP +PD   W +LLG  
Sbjct: 300 GSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGAS 359

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           RIHGN +L ++AA+ +FE+EP N   Y+ ++ +YA++
Sbjct: 360 RIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAAS 396



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 154/338 (45%), Gaps = 58/338 (17%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F  N +L  Y +  ++  A+ LF+ M ERD+ S+N M+SG+ + G +++AR +F +MP 
Sbjct: 26  LFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPL 85

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYR------------MMQNFENSVSNKF-------- 160
           ++  SW  +++ YV+  +  +A  L+             +M  F     N F        
Sbjct: 86  KNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDS 145

Query: 161 ------------------------------------TLSSVLSAVSAIQCLRLGKEIHGY 184
                                               + +  LS  S I  L LG+++H  
Sbjct: 146 ISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCR 205

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +++ G+ +   V +AL  MY KCGSI+EAR  F +++++DVVSW  MI  Y + G  EE 
Sbjct: 206 LVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEA 265

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVH 303
             +F  +  +GIRP+  T   VL AC+     + G +    M R  G        + +V 
Sbjct: 266 LTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVD 325

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
           +  + G +E ++ +   MP  PD  +W +L+     +G
Sbjct: 326 LLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHG 363



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 34/241 (14%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C++  L   +++       + S ++  +  C    ALE G+++H  L  +G++ G ++ N
Sbjct: 160 CSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGN 219

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LL MY KCG+I +A+  F E+ E+DV S+NTMI G+ + G  E+A  +F+ M       
Sbjct: 220 ALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMK------ 273

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
            T  I       +P +A                  T+ SVL+A S    +  G E    +
Sbjct: 274 -TTGI-------RPDDA------------------TMVSVLAACSHAGLVDQGSEYFYSM 307

Query: 186 MRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREE 243
            R  G  +  V ++ + D+ G+ G + EA+ +   M  + D  +W A++G     G  E 
Sbjct: 308 NRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 367

Query: 244 G 244
           G
Sbjct: 368 G 368


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 241/450 (53%), Gaps = 47/450 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  +++ C     L EG  V       GF   VF+ N L+ MY +CG    A+ +FD   
Sbjct: 113 YPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFS 172

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E+D+ S+N+M+ G+   G +E A+N+FDEMP+RD  SW+ MI GY +             
Sbjct: 173 EKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGK------------- 219

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS----DEVVWSALSDMY 204
                                      ++G+       R  FDS    D V W+++ D Y
Sbjct: 220 ---------------------------KMGEVNRA---RVFFDSMPTRDLVSWNSMIDGY 249

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G +  AR+IFDKM+ ++V+SW+ MI  Y Q    +E   LF +++  GI+P+  +  
Sbjct: 250 AKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVV 309

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           G ++AC+   A + G+ +H YM R          +ALV MY KCG+ + ++++FN MP  
Sbjct: 310 GAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPER 369

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           ++VSW  +I G   NG   +ALE F  +       D ++F+GVL AC+HA LV +GL  F
Sbjct: 370 NVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIF 429

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           + +K  + L    +HY C+VDLL R+G+  + +++I  MPMKP+  LW SLL  CRIH N
Sbjct: 430 NQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQN 489

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYA 474
           + LA+   E L E++ ++   YV M+NIYA
Sbjct: 490 VTLAEIVVERLAELKADDSGVYVLMSNIYA 519



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 116/264 (43%), Gaps = 10/264 (3%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSD-MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +IH  ++ T   SD    S L D +  K  ++N A  +F ++   +      M+  Y + 
Sbjct: 29  QIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTES 88

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              E     ++E+ + G+  + +T+  VL AC        G  V G   + G+    F  
Sbjct: 89  STPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVV 148

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + L+ MY +CG    ++ VF+G    DLVSW S++ GY   G  + A   F+ + +    
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVV 208

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
              I+  G        G V++   +F S+  +  +++ +     ++D  A+ G    A +
Sbjct: 209 SWSIMIDGY---GKKMGEVNRARVFFDSMPTRDLVSWNS-----MIDGYAKVGEMEVARE 260

Query: 419 VISKMPMKPDKFLWASLLGGCRIH 442
           +  KM ++ +   W+ ++ G   H
Sbjct: 261 IFDKM-LQKNVISWSIMIDGYAQH 283



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 2   IDILCNQRRLKEAL----QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID     R  KEAL    Q+L Q   P        +  C Q  AL++G+ +H ++K +  
Sbjct: 277 IDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRM 336

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
              + +   L+DMY KCG+  +A+ +F+ M ER+V S+N MI G    G  ++A   F +
Sbjct: 337 LLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQ 396

Query: 118 MPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           M       D+  +  ++      N   E L ++  M+
Sbjct: 397 MEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMK 433


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 255/456 (55%), Gaps = 38/456 (8%)

Query: 25  SPS---IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           SPS    Y+SL++ C   +ALE GK++H+ L   G    + ++  L++ Y+ C       
Sbjct: 54  SPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCN------ 107

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                    SL  A +LFD++P+ + F W  +I  Y  +N P E
Sbjct: 108 -------------------------SLRNAHHLFDKIPKGNLFLWNVLIRAYA-WNGPHE 141

Query: 142 -ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            A+ LY  M  +     N FTL  VL A SA+  +  G+ IH  ++R+G++ D  V +AL
Sbjct: 142 TAISLYHQMLEYGLKPDN-FTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAAL 200

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            DMY KCG + +AR +FDK+VDRD V W +M+  Y Q G  +E  +L  E+   G+RP  
Sbjct: 201 VDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTE 260

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T   V+++ AD A    G+++HG+  R G+       +AL+ MY+KCG+V+ +  +F  
Sbjct: 261 ATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFER 320

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           +    +VSW ++I GYA +G+  +AL+ FE ++K   QPDHI FVG L AC+   L+D+G
Sbjct: 321 LREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEG 379

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
              ++ +     +  T +HY C+VDLL   G+  EA D+I +M + PD  +W +LL  C+
Sbjct: 380 RALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCK 439

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            HGN++LA+ A E L E+EP++   YV +AN+YA +
Sbjct: 440 THGNVELAEVALEKLIELEPDDSGNYVILANMYAQS 475



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 174/355 (49%), Gaps = 41/355 (11%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           + A+ + HQ+      P       +++ C     + EG+ +H  +  SG++  VF+   L
Sbjct: 141 ETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAAL 200

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG + DA+ +FD++ +RD   +N+M++ + + G  +++ +L  EM  +      
Sbjct: 201 VDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKG----- 255

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                 VR   P EA                  TL +V+S+ + I CL  G+EIHG+  R
Sbjct: 256 ------VR---PTEA------------------TLVTVISSSADIACLPHGREIHGFGWR 288

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF  ++ V +AL DMY KCGS+  A  +F+++ ++ VVSW A+I  Y   G   E   L
Sbjct: 289 HGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDL 348

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYS 306
           F  ++K   +P+  TF G L AC+     + G+ ++  M R    +P     + +V +  
Sbjct: 349 FERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLG 407

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
            CG ++ +  +   M   PD   W +L+     +G  + A    E L++   +PD
Sbjct: 408 HCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIE--LEPD 460



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 160/318 (50%), Gaps = 9/318 (2%)

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           + +F +S SN +  +S+L +  + + L  GK++H  + + G   +  + + L + Y  C 
Sbjct: 48  VDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCN 107

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           S+  A  +FDK+   ++  W  +I  Y   G  E   +L+ ++++ G++P+ FT   VL 
Sbjct: 108 SLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLK 167

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+  +    G+ +H  + R G++   F  +ALV MY+KCG V +++ VF+ +   D V 
Sbjct: 168 ACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVL 227

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W S++A YAQNG PD++L     +   G +P     V V+++      +  G +  H   
Sbjct: 228 WNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE-IHGFG 286

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG----N 444
            +HG  Y       ++D+ A+ G    A  +  ++  K     W +++ G  +HG     
Sbjct: 287 WRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREK-RVVSWNAIITGYAMHGLAVEA 345

Query: 445 LDLAKRAAEALFEIEPEN 462
           LDL +R  +   E +P++
Sbjct: 346 LDLFERMMK---EAQPDH 360


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/547 (33%), Positives = 286/547 (52%), Gaps = 78/547 (14%)

Query: 5   LCNQRRLKEALQILHQISH----PSPSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFK 58
           L    R +EA  +  Q+      P+ + Y S++         ALE  K+VH H   +GF 
Sbjct: 207 LAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFI 266

Query: 59  PGVFISNCLLDMYAKCGNISDAQ-------------------------------TLFDEM 87
             + + N L+ MYAKCG+I DA+                               T+F +M
Sbjct: 267 SDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKM 326

Query: 88  QER----DVCSY----NTMISG-------------------------------FTKGGSL 108
           Q+     D  +Y    NT +S                                + + GS+
Sbjct: 327 QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSI 386

Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
           + A+ +FD++  R+  +W AMI G  +     EAL L+  M+  E    +  T  ++LSA
Sbjct: 387 DDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRR-EGFFPDATTFVNILSA 445

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
               + L   KE+H Y +  G   D  V +AL  MY KCG+   A+Q+FD MV+R+V +W
Sbjct: 446 NVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTW 504

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T MI    Q G   E F+LF ++++ GI P+A T+  +L+ACA   A E  K+VH +   
Sbjct: 505 TVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVN 564

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G        +ALVHMY+KCG+V+++++VF+ M   D+ SWT +I G AQ+G    AL+ 
Sbjct: 565 AGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDL 624

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  +   G +P+   FV VL+AC+HAGLVD+G + F S+ + +G+  T +HY C+VDLL 
Sbjct: 625 FVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLG 684

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G+  EA+  I  MP++P    W +LLG C  +GNL++A+ AA+   +++P++ +TYV 
Sbjct: 685 RAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVL 744

Query: 469 MANIYAS 475
           ++NIYA+
Sbjct: 745 LSNIYAA 751



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 223/425 (52%), Gaps = 36/425 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+  +   P+   Y S+++ C    +L+ GKK+H+H+  SGF+  V +   L++MY KCG
Sbjct: 20  QMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCG 79

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           +I DAQ +FD+M ER+V S+  MI G    G  ++A + F +M QR+ F           
Sbjct: 80  SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQM-QREGF----------- 127

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                               + N +T  S+L+A ++   L   KE+H + +  G   D  
Sbjct: 128 --------------------IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 167

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +AL  MY K GSI++AR +FD MV+RD+ SWT MIG   Q GR +E F+LF ++ + G
Sbjct: 168 VGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGG 227

Query: 256 IRPNAFTFAGVLNACA--DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             PN  T+  +LNA A     A E  K+VH +  + G+       +AL+HMY+KCG++++
Sbjct: 228 CLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDD 287

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ VF+GM   D++SW ++I G AQNG   +A   F  + + G  PD   ++ +L     
Sbjct: 288 ARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVS 347

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            G  +  ++  H    + GL       +  V +  R G   +A+ +  K+ ++ +   W 
Sbjct: 348 TGAWE-WVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWN 405

Query: 434 SLLGG 438
           +++GG
Sbjct: 406 AMIGG 410



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 144/481 (29%), Positives = 223/481 (46%), Gaps = 76/481 (15%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           Q      LQ+  +   P+   Y S++       ALE  K+VHSH  ++G    + + N L
Sbjct: 113 QEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNAL 172

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYAK                                GS++ AR +FD M +RD FSWT
Sbjct: 173 VHMYAK-------------------------------SGSIDDARVVFDGMVERDIFSWT 201

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL--SAVSAIQCLRLGKEIHGYI 185
            MI G  ++ +  EA  L+  M+     + N  T  S+L  SA+++   L   KE+H + 
Sbjct: 202 VMIGGLAQHGRGQEAFSLFLQMER-GGCLPNLTTYLSILNASAITSTGALEWVKEVHKHA 260

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
            + GF SD  V +AL  MY KCGSI++AR +FD M DRDV+SW AMIG   Q G   E F
Sbjct: 261 GKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAF 320

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F ++ + G  P++ T+  +LN      A E  K+VH +   +G        SA VHMY
Sbjct: 321 TIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMY 380

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            +CG++++++ +F+ +   ++ +W ++I G AQ     +AL  F  + + G  PD   FV
Sbjct: 381 IRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFV 440

Query: 366 GVLTAC-----------THAGLVDKGL-----------------------QYFHSIKEKH 391
            +L+A             H+  +D GL                       Q F  + E++
Sbjct: 441 NILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERN 500

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKM---PMKPDKFLWASLLGGCRIHGNLDLA 448
             T+T      ++  LA+ G  HEA  +  +M    + PD   + S+L  C   G L+  
Sbjct: 501 VTTWTV-----MISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWV 555

Query: 449 K 449
           K
Sbjct: 556 K 556



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 189/353 (53%), Gaps = 12/353 (3%)

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI GY  Y    +A+ +Y  M+  E    N+ T  S+L A  +   L+ GK+IH +I+++
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRR-EGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQS 59

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF SD  V +AL +MY KCGSI++A+ IFDKMV+R+V+SWT MIG     GR +E F  F
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++ + G  PN++T+  +LNA A   A E  K+VH +    G        +ALVHMY+K 
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G++++++ VF+GM   D+ SWT +I G AQ+G   +A   F  + + G  P+   ++ +L
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 369 --TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
             +A T  G ++  ++  H    K G          ++ + A+ G   +A  V   M  +
Sbjct: 240 NASAITSTGALE-WVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMANIYAS 475
            D   W +++GG   +G       A     +++ E    +  TY+++ N + S
Sbjct: 299 -DVISWNAMIGGLAQNG---CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVS 347



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 37/288 (12%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C        LQ+L +   P  + Y S++  C    ALE  K+VHSH  ++G    + + N
Sbjct: 516 CGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGN 575

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ MYAKCG++ DA+ +FD+M ERDV S+  MI G  + G                   
Sbjct: 576 ALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHG------------------- 616

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-KEIHGY 184
                       + ++ALDL+  M+  E    N ++  +VLSA S    +  G ++    
Sbjct: 617 ------------RGLDALDLFVKMK-LEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSL 663

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQ-IFDKMVDRDVVSWTAMIGRYFQEGRREE 243
               G +     ++ + D+ G+ G + EA+  I +  ++     W A++G     G  E 
Sbjct: 664 TQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLE- 722

Query: 244 GFALFSELIKSGIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
             A F+   +  ++P +A T+  + N  A     E    V   M R G
Sbjct: 723 -MAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRG 769


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/495 (33%), Positives = 265/495 (53%), Gaps = 65/495 (13%)

Query: 15  LQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           +Q+LH+    P+   +  +I+   +  +L  G+ +H  +  + F   +FISN L+  Y+ 
Sbjct: 119 IQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSS 178

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
            G++  A  +F ++ E+D+ S+N+MISGF +GGS E+A  LF  M               
Sbjct: 179 LGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM--------------- 223

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
                              EN+  N+ T+  VLSA +    L  G+    YI R G D +
Sbjct: 224 -----------------KMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDIN 266

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT------------------------ 229
            ++ +A+ DMY KCGS+ +AR++FDKM ++D+VSWT                        
Sbjct: 267 LILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPR 326

Query: 230 -------AMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
                  A+I  Y Q G+ +E  A+F EL +    +PN  T A  L ACA   A +LG  
Sbjct: 327 EDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGW 386

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H Y+ + G        ++L+ MYSKCG++E + +VF  + R D+  W+++IAG A +G 
Sbjct: 387 IHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGH 446

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              A++ F  + ++  +P+ + F  +L AC+H+GLVD+G  +F+ ++  +G+   + HYA
Sbjct: 447 GRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYA 506

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C+VD+L R+G   EA ++I KMP+ P   +W +LLG CRI+GN++LA+ A   L E +  
Sbjct: 507 CMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSN 566

Query: 462 NPATYVTMANIYASA 476
           N   YV ++NIYA A
Sbjct: 567 NHGAYVLLSNIYAKA 581



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 192/388 (49%), Gaps = 38/388 (9%)

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
             +   SL+ A  +FD++P+ + ++W  +I  +    +PI+ L ++  M +      N +
Sbjct: 73  ALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSY 132

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T   V+ A + +  L  G+ IHG +M+  F SD  + ++L   Y   G ++ A  +F K+
Sbjct: 133 TFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKI 192

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
           V++D+VSW +MI  + Q G  EE   LF  +     RPN  T  GVL+ACA     E G+
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGR 252

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA--- 337
               Y+ R G D     ++A++ MY KCG++E+++++F+ M   D+VSWT++I GYA   
Sbjct: 253 WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVG 312

Query: 338 ----------------------------QNGMPDKALEYF-ELLLKSGTQPDHIVFVGVL 368
                                       QNG P +AL  F EL L   T+P+ +     L
Sbjct: 313 DYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTL 372

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC   G +D G  + H   +K G+         ++D+ ++ G   +A +V   +  + D
Sbjct: 373 AACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR-D 430

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALF 456
            F+W++++ G  +HG+     RAA  LF
Sbjct: 431 VFVWSAMIAGLAMHGH----GRAAIDLF 454



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 183/330 (55%), Gaps = 6/330 (1%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EALQ+  ++    + P+      ++  C +   LE G+    +++ +G    + +SN +
Sbjct: 214 EEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAM 273

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           LDMY KCG++ DA+ LFD+M+E+D+ S+ TMI G+ K G  + AR +FD MP+ D  +W 
Sbjct: 274 LDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWN 333

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           A+IS Y +  +P EAL ++R +Q  +N+  N+ TL+S L+A + +  + LG  IH YI +
Sbjct: 334 ALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKK 393

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G   +  + ++L DMY KCG + +A ++F  +  RDV  W+AMI      G       L
Sbjct: 394 QGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDL 453

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           FS++ ++ ++PNA TF  +L AC+     + G+     M  + G  P S   + +V +  
Sbjct: 454 FSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILG 513

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           + G +E + ++   MP  P    W +L+  
Sbjct: 514 RAGCLEEAVELIEKMPIVPSASVWGALLGA 543



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 154/293 (52%), Gaps = 15/293 (5%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCG-----SINEARQIFDKMVDRDVVSWTAMIG 233
           K++H +++RTG   D     + + ++  C      S++ A ++FD++   ++ +W  +I 
Sbjct: 47  KQLHAHMLRTGLFFDP---PSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIR 103

Query: 234 RYFQEGRREEGFALFSELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
            +    +  +G  +F +++    R PN++TF  V+ A  + ++   G+ +HG + +  + 
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG 163

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              F +++L+H YS  G+++++  VF+ +   D+VSW S+I+G+ Q G P++AL+ F+ +
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM 223

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
                +P+ +  VGVL+AC     ++ G ++     E++G+         ++D+  + G 
Sbjct: 224 KMENARPNRVTMVGVLSACAKRIDLEFG-RWACDYIERNGIDINLILSNAMLDMYVKCGS 282

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
             +A  +  KM  K D   W +++ G    G+ D A+R    +F++ P    T
Sbjct: 283 LEDARRLFDKMEEK-DIVSWTTMIDGYAKVGDYDAARR----VFDVMPREDIT 330


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/391 (39%), Positives = 231/391 (59%), Gaps = 6/391 (1%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-----EALDL 145
           DV     ++  + K G LE A  +F  MP  +   + AMI+G+++          EA+ L
Sbjct: 257 DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYL 316

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           +  MQ+      ++FT SS+L A S I+    GK+IH  I +    SDE + +AL ++Y 
Sbjct: 317 FFEMQS-RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 375

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
             GSI +  + F      DVVSWT++I  + Q G+ E G  LF EL+ SG +P+ FT + 
Sbjct: 376 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 435

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +L+ACA+ AA + G+Q+H Y  + G   ++   ++ + MY+KCG+++++   F     PD
Sbjct: 436 MLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPD 495

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW+ +I+  AQ+G   +A++ FEL+  SG  P+HI F+GVL AC+H GLV++GL+YF 
Sbjct: 496 IVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 555

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +K+ HG+T    H ACIVDLL R+GR  EAE  I     + D  +W SLL  CR+H   
Sbjct: 556 IMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKAT 615

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           D  KR AE + E+EPE  A+YV + NIY  A
Sbjct: 616 DTGKRVAERVIELEPEAAASYVLLYNIYNDA 646



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 204/417 (48%), Gaps = 41/417 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+ L+Q   +  +L  GK  H H+  + FKP +F+ N LL MY KCG             
Sbjct: 22  YTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCG------------- 68

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E DV                  A+ LFD MP+R+  SW ++ISGY +     E ++L++ 
Sbjct: 69  ETDV------------------AKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKE 110

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
            +  +  + +KFT S+ LS       LRLG+ IH  I  +G     ++ ++L DMY KCG
Sbjct: 111 ARMSDLRL-DKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCG 169

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I+ AR +F+   + D VSW ++I  Y + G  +E   L  ++++ G+  N++     L 
Sbjct: 170 RIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALK 229

Query: 269 ACADH--AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           AC  +  ++ E GK +HG   ++G D      +AL+  Y+K G++E++ K+F  MP P++
Sbjct: 230 ACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNV 289

Query: 327 VSWTSLIAGYAQ-----NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           V + ++IAG+ Q     +   ++A+  F  +   G +P    F  +L AC+     + G 
Sbjct: 290 VMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGK 349

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           Q  H+   K+ L         +V+L + SG   +        P K D   W SL+ G
Sbjct: 350 Q-IHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLIVG 404



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 144/314 (45%), Gaps = 34/314 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS   +SS+++ C    A E GK++H+ +     +   FI N L+++Y+  G+I D    
Sbjct: 327 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 386

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F    + DV S+ ++I G  + G  E    LF E+                         
Sbjct: 387 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELL------------------------ 422

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                   F     ++FT+S +LSA + +  ++ G++IH Y ++TG  +  ++ ++   M
Sbjct: 423 --------FSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICM 474

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG I+ A   F +  + D+VSW+ MI    Q G  +E   LF  +  SGI PN  TF
Sbjct: 475 YAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITF 534

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKK-VFNGM 321
            GVL AC+     E G +    M +  G  P    ++ +V +  + G +  ++  + +  
Sbjct: 535 LGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSG 594

Query: 322 PRPDLVSWTSLIAG 335
              D V W SL++ 
Sbjct: 595 FEGDPVMWRSLLSA 608



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 15/197 (7%)

Query: 14  ALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
            L + H++      P     S ++  C    A++ G+++H++   +G      I N  + 
Sbjct: 414 GLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQIC 473

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFS 125
           MYAKCG+I  A   F E +  D+ S++ MIS   + G  ++A +LF+ M       ++ +
Sbjct: 474 MYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHIT 533

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--EIHG 183
           +  ++          E L  + +M+       N    + ++  +      R G+  E   
Sbjct: 534 FLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLG-----RAGRLAEAES 588

Query: 184 YIMRTGFDSDEVVWSAL 200
           +IM +GF+ D V+W +L
Sbjct: 589 FIMDSGFEGDPVMWRSL 605


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 270/525 (51%), Gaps = 77/525 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++ +  C +   L  G+ VH+     G   GVF+SN L+ MY+KCG + +A+ +FD  +
Sbjct: 112 YAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAE 171

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---------------------------- 120
           ERD  S+N+++SG+ + G+ E+   +F  M +                            
Sbjct: 172 ERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIA 231

Query: 121 -------------RDNFSWTAMISGYVRYNQPIEALDLYRMMQN-----FENSVS----- 157
                         D F  +AMI  Y +    +EA  L+R +Q      F   ++     
Sbjct: 232 EAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRT 291

Query: 158 --------------------------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
                                      +FT SSVL A +    L  GK+IHG +++  F 
Sbjct: 292 ETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQ 351

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            D+ + SAL D+Y   G + +  + F      D+V+WTAM+    Q    E+  +LF E 
Sbjct: 352 EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHES 411

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           + +G++P+ FT + V+NACA  A    G+Q+  + T+ G+D ++   ++ VHMY++ G+V
Sbjct: 412 LGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDV 471

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           + + + F  M   D+VSW+++I+ +AQ+G    AL +F+ ++ +   P+ I F+GVLTAC
Sbjct: 472 DAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTAC 531

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           +H GLVD+GL+Y+ ++ + +GL+ T  H  C+VDLL R+GR  +AE  IS      D  +
Sbjct: 532 SHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVI 591

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W SLL  CRIH +L+  +  A  + E+EP + A+YV + N+Y  A
Sbjct: 592 WRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDA 636



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 176/355 (49%), Gaps = 17/355 (4%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           NT+++ + + G    AR L DEMP+R+  S+  +I  Y R  + +  L L  + +     
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSR--EGLAPLSLETLARARRAG 104

Query: 156 VS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           V  ++F+ ++ L+A S    LR G+ +H   +  G  S   V ++L  MY KCG + EAR
Sbjct: 105 VDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEAR 164

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH- 273
           ++FD   +RD VSW +++  Y + G REE   +F+ + + G+  N+F    V+  C+   
Sbjct: 165 RVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRG 224

Query: 274 -AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
               ++ + VHG + + G D   F  SA++ MY+K G +  +  +F  +  P++V + ++
Sbjct: 225 DGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTM 284

Query: 333 IAGYAQN------GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           IAG+ +        +  +AL  +  +   G QP    F  VL AC  AG ++ G Q    
Sbjct: 285 IAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQ 344

Query: 387 IKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           + +    T+  D +  + ++DL   SG   +        P K D   W +++ GC
Sbjct: 345 VIK---YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGC 395



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 158/328 (48%), Gaps = 38/328 (11%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL +  ++      P+   +SS+++ C     LE GK++H  +    F+   FI + L+
Sbjct: 302 EALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALI 361

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           D+Y   G + D    F    + D+ ++  M+SG  +    E+A +LF E          +
Sbjct: 362 DLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHE----------S 411

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           + +G     +P    DL              FT+SSV++A +++   R G++I  +  ++
Sbjct: 412 LGAGL----KP----DL--------------FTISSVMNACASLAVARAGEQIQCFATKS 449

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GFD   V+ ++   MY + G ++ A + F +M   DVVSW+A+I  + Q G   +    F
Sbjct: 450 GFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFF 509

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSK 307
            E++ + + PN  TF GVL AC+     + G + +  M +  G  P     + +V +  +
Sbjct: 510 DEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGR 569

Query: 308 CGNVENSKK-VFNGMPRPDLVSWTSLIA 334
            G + +++  + NG+   D V W SL+A
Sbjct: 570 AGRLADAEAFISNGIFHADPVIWRSLLA 597



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y + G    AR++ D+M  R+ VS+  +I  Y +EG         +   ++G+  + F++
Sbjct: 53  YCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSY 112

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A  L AC+       G+ VH      G     F +++LV MYSKCG +  +++VF+    
Sbjct: 113 AAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEE 172

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-Q 382
            D VSW SL++GY + G  ++ +  F ++ + G   +      V+  C+  G     + +
Sbjct: 173 RDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAE 232

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-CR 440
             H    K GL       + ++D+ A+ G   EA  +   +  +P+  ++ +++ G CR
Sbjct: 233 AVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSV-QEPNVVMFNTMIAGFCR 290



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 20/208 (9%)

Query: 6   CNQRRLKE-ALQILHQI--SHPSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           C Q  L E AL + H+   +   P ++  SS++  C        G+++      SGF   
Sbjct: 395 CVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRF 454

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
             + N  + MYA+ G++  A   F EM+  DV S++ +IS   + G    A + FDEM  
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 121 R----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL- 175
                +  ++  +++         E L  Y  M       +  + LS  +   + +  L 
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETM-------NKDYGLSPTIKHCTCVVDLL 567

Query: 176 -RLGK--EIHGYIMRTGFDSDEVVWSAL 200
            R G+  +   +I    F +D V+W +L
Sbjct: 568 GRAGRLADAEAFISNGIFHADPVIWRSL 595



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 139/348 (39%), Gaps = 54/348 (15%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+  N   +++  +            +++++  C QN   E+   +      +G KP +
Sbjct: 361 IDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDL 420

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ--------ERDVCSYNTMISGFTKGGSLEQARN 113
           F  + +++    C +++ A+   +++Q        +R     N+ +  + + G ++ A  
Sbjct: 421 FTISSVMN---ACASLAVARA-GEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATR 476

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
            F EM   D  SW+A+IS + ++    +AL  +  M +    V N+ T   VL+A S   
Sbjct: 477 RFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD-AKVVPNEITFLGVLTACS--- 532

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
                   HG ++  G       +  ++  YG   +I     + D            ++G
Sbjct: 533 --------HGGLVDEGLR----YYETMNKDYGLSPTIKHCTCVVD------------LLG 568

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
           R    GR  +  A  S  I      +   +  +L +C  H   E G+ V   +  +  +P
Sbjct: 569 R---AGRLADAEAFISNGI---FHADPVIWRSLLASCRIHRDLERGQLVANRIMEL--EP 620

Query: 294 YSFAASALVH-MYSKCGNVENSKKVFN-----GMPRPDLVSWTSLIAG 335
            S A+  +++ MY   G +  + K  +     G+ +   +SW  L  G
Sbjct: 621 TSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCG 668


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 262/457 (57%), Gaps = 37/457 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +IY+ L++ C     L++GK VH+HL +S F+  + I N +L MYAKCG        
Sbjct: 89  PDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG-------- 140

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR---YNQPI 140
                                  SLE AR +FDEM  +D  +WT+MI+GY +    +   
Sbjct: 141 -----------------------SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSAT 177

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            AL L+  M   +    N+F LSS++     +     GK+IHG   + GF  +  V S+L
Sbjct: 178 TALVLFLEMVR-DGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSL 236

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            DMY +CG + E+R +FD++  ++ VSW A+I  + ++G  EE   LF ++ + G     
Sbjct: 237 VDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATE 296

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           FT++ +L + +   + E GK +H +M + G     +  + L+HMY+K GN+ ++KKVF+ 
Sbjct: 297 FTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDR 356

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           + + D+VS  S++ GYAQ+G+  +A+E F E++L    +P+ I F+ VLTAC+HAGL+D+
Sbjct: 357 LVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDE 416

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           GL YF  +K K+GL     HY  +VDL  R+G   +A+  I +MP++P+  +W +LLG  
Sbjct: 417 GLYYFELMK-KYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGAS 475

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++H N ++   AA+ + E++P  P  +  ++NIYASA
Sbjct: 476 KMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASA 512



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 161/323 (49%), Gaps = 34/323 (10%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           L+++     P+    SSL++ C    +  +GK++H      GF+  VF+ + L+DMYA+C
Sbjct: 184 LEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARC 243

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G + +++ +FDE++ ++  S+N +ISGF + G  E+A  LF +M QR+ F  T       
Sbjct: 244 GELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKM-QREGFGAT------- 295

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                                   +FT S++L + S    L  GK +H ++M++G     
Sbjct: 296 ------------------------EFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVG 331

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE-LIK 253
            V + L  MY K G+I +A+++FD++V  DVVS  +M+  Y Q G  +E   LF E ++ 
Sbjct: 332 YVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLW 391

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             I PN  TF  VL AC+     + G      M + G +P     + +V ++ + G ++ 
Sbjct: 392 VEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQ 451

Query: 314 SKKVFNGMP-RPDLVSWTSLIAG 335
           +K     MP  P+   W +L+  
Sbjct: 452 AKSFIEEMPIEPNATIWGALLGA 474


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/444 (35%), Positives = 255/444 (57%), Gaps = 33/444 (7%)

Query: 33   IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
            +  C    +L  G+ +H     + F   V  +N LLDMY+KC                  
Sbjct: 661  VAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKC------------------ 702

Query: 93   CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                         G+L  A   F++M Q+   SWT++I+ YVR     +A+ L+  M++ 
Sbjct: 703  -------------GNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES- 748

Query: 153  ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
            +    + ++++SVL A +    L  G+++H YI +        V +AL DMY KCGS+ E
Sbjct: 749  KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEE 808

Query: 213  ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
            A  +F ++  +D+VSW  MIG Y +     E   LF+E+ K   RP+  T A +L AC  
Sbjct: 809  AYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGS 867

Query: 273  HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
             AA E+G+ +HG + R GY      A+AL+ MY KCG++ +++ +F+ +P  DL++WT +
Sbjct: 868  LAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVM 927

Query: 333  IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
            I+G   +G+ ++A+  F+ +  +G +PD I F  +L AC+H+GL+++G  +F+S+  +  
Sbjct: 928  ISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECN 987

Query: 393  LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
            +    +HYAC+VDLLAR+G   +A ++I  MP+KPD  +W +LL GCRIH +++LA++ A
Sbjct: 988  MEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVA 1047

Query: 453  EALFEIEPENPATYVTMANIYASA 476
            E +FE+EP+N   YV +ANIYA A
Sbjct: 1048 EHVFELEPDNAGYYVLLANIYAEA 1071



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 145/512 (28%), Positives = 249/512 (48%), Gaps = 77/512 (15%)

Query: 5   LCNQRRLKEALQILH--QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG------ 56
            C    L+ A+++L   Q S    + YSS++Q C +++ L+EGK VHS + S+G      
Sbjct: 428 FCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGV 487

Query: 57  --------------FKPG------------VFISNCLLDMYAKCGNISDAQTLFDEMQER 90
                          + G            VF+ N ++  YAK G+  ++  LF +MQ+ 
Sbjct: 488 LGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKL 547

Query: 91  DV----------------------------CSY-----------NTMISGFTKGGSLEQA 111
            +                            C Y           N++I+ + K G ++ A
Sbjct: 548 GITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSA 607

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
             LFDE+  RD  SW +MISG V       AL+ +  M      V +  TL + ++A + 
Sbjct: 608 HKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGV-DLATLVNSVAACAN 666

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           +  L LG+ +HG  ++  F  + +  + L DMY KCG++N+A Q F+KM  + VVSWT++
Sbjct: 667 VGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSL 726

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  Y +EG  ++   LF E+   G+ P+ ++   VL+ACA   + + G+ VH Y+ +   
Sbjct: 727 IAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNM 786

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                 ++AL+ MY+KCG++E +  VF+ +P  D+VSW ++I GY++N +P++AL+ F  
Sbjct: 787 ALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAE 846

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           + K  ++PD I    +L AC     ++ G +  H    ++G +        ++D+  + G
Sbjct: 847 MQKE-SRPDGITMACLLPACGSLAALEIG-RGIHGCILRNGYSSELHVANALIDMYVKCG 904

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               A  +   +P K D   W  ++ GC +HG
Sbjct: 905 SLVHARLLFDMIPEK-DLITWTVMISGCGMHG 935



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 70/371 (18%)

Query: 2    IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
            +D+      L +A+Q   ++   +   ++SLI    +    ++  ++   ++S G  P V
Sbjct: 696  LDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDV 755

Query: 62   F-----------------------------------ISNCLLDMYAKCGNISDAQTLFDE 86
            +                                   +SN L+DMYAKCG++ +A  +F +
Sbjct: 756  YSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQ 815

Query: 87   MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
            +  +D+ S+NTMI G++K                                + P EAL L+
Sbjct: 816  IPVKDIVSWNTMIGGYSKN-------------------------------SLPNEALKLF 844

Query: 147  RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
              MQ  + S  +  T++ +L A  ++  L +G+ IHG I+R G+ S+  V +AL DMY K
Sbjct: 845  AEMQ--KESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVK 902

Query: 207  CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            CGS+  AR +FD + ++D+++WT MI      G   E  A F ++  +GI+P+  TF  +
Sbjct: 903  CGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSI 962

Query: 267  LNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RP 324
            L AC+       G      M +    +P     + +V + ++ GN+  +  +   MP +P
Sbjct: 963  LYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKP 1022

Query: 325  DLVSWTSLIAG 335
            D   W +L+ G
Sbjct: 1023 DATIWGALLCG 1033



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 163/338 (48%), Gaps = 11/338 (3%)

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A++L RM Q  E  ++     SS+L   +  +CL+ GK +H  I   G   + V+ + L 
Sbjct: 437 AVELLRMSQKSELDLN---AYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLV 493

Query: 202 DMYGKCGSINEARQIFDKMV-DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            MY  CG++ E R+IFD ++ D  V  W  M+  Y + G   E   LF ++ K GI  N+
Sbjct: 494 FMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNS 553

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +TF+ +L   A        K++HG + ++G+  Y+   ++L+  Y K G V+++ K+F+ 
Sbjct: 554 YTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDE 613

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           +   D+VSW S+I+G   NG    ALE+F  +L      D    V  + AC + G +  G
Sbjct: 614 LGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG 673

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            +  H    K   +        ++D+ ++ G  ++A     KM  K     W SL+    
Sbjct: 674 -RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT-VVSWTSLIAAYV 731

Query: 441 IHGNLDLAKRAAEALFEIEPE--NPATYVTMANIYASA 476
             G  D A R     +E+E +  +P  Y   + ++A A
Sbjct: 732 REGLYDDAIR---LFYEMESKGVSPDVYSMTSVLHACA 766


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 261/478 (54%), Gaps = 39/478 (8%)

Query: 2   IDILCNQRRLKEALQI-----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           I+ L   +R  EAL++     L+         Y +L+  C   +++   KKV +++ +SG
Sbjct: 102 IEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSG 161

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
             P  ++ N +L M+ KCG + DA                               R LFD
Sbjct: 162 LDPDEYLRNRVLLMHVKCGMMIDA-------------------------------RRLFD 190

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM-QNFENSVSNKFTLSSVLSAVSAIQCL 175
           EMP+++  SW  +I G V      EA  L+ MM Q F ++ S  F   +++ A + +  +
Sbjct: 191 EMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFV--TMIRASAGLGLI 248

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
             G+++H   ++TG   D  V  AL DMY KCGSI +A+ +FD+M ++  V W ++I  Y
Sbjct: 249 FAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGY 308

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
              G  EE  +++ E+  SG++ + FTF+ ++  CA  A+ E  KQ H  + R G+    
Sbjct: 309 ALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDI 368

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
            A +ALV +YSK G +E++K VF+ MP  +++SW +LIAGY  +G   +A+E FE +L  
Sbjct: 369 VANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHE 428

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P+H+ F+ VL+AC+++GL D+G + F S+   H +   A HYAC+++LL R G   E
Sbjct: 429 GMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDE 488

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           A  +I   P KP   +WA+LL  CR+H N +L K AAE L+ + PE  + YV + NIY
Sbjct: 489 AFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIY 546


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 267/478 (55%), Gaps = 39/478 (8%)

Query: 4   ILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK 58
           +LC  ++ ++AL++          H   S Y +LI  C   +++   K++ +++  +GF+
Sbjct: 107 VLC--KKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFE 164

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P  ++ N +L M+ KCG + DA            C                    LFDEM
Sbjct: 165 PDQYMRNRVLLMHVKCGMMIDA------------C-------------------RLFDEM 193

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P R+  SW  +ISGYV     +EA  L+ +M+  E       T ++++ A + ++ +  G
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMRE-EFYDCGPRTFATMIRASAGLEIIFPG 252

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +++H   ++ G   D  V  AL DMY KCGS+ +A  +FD+M D+ +V W ++I  Y   
Sbjct: 253 RQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALH 312

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  EE   L+ E+  SG++ + FTF+ ++  C+  A+    KQVH  + R G+     A 
Sbjct: 313 GYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVAN 372

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +ALV  YSK G V++++ VF+ M   +++SW +LIAGY  +G  ++A++ FE +L+ G  
Sbjct: 373 TALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMM 432

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+H+ F+ VL+AC+ +GL ++G + F S+   H +   A H+AC+++LL R G   EA  
Sbjct: 433 PNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYA 492

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +I K P +P   +WA+LL  CR+HGNL+L K AAE L+ +EPE  + Y+ + NIY S+
Sbjct: 493 LIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSS 550



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 189/408 (46%), Gaps = 67/408 (16%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           P  ++++I+       +  G+++HS    +G    +F+S  L+DMY+KCG++ DA  +FD
Sbjct: 233 PRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFD 292

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
           EM ++ +  +N++I+G+   G  E+A +L+ EM  RD  S   M                
Sbjct: 293 EMPDKTIVGWNSIIAGYALHGYSEEALDLYHEM--RD--SGVKM---------------- 332

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
                       + FT S ++   S +  +   K++H  ++R GF  D V  +AL D Y 
Sbjct: 333 ------------DHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYS 380

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           K G +++AR +FD+M  R+++SW A+I  Y   G  EE   +F ++++ G+ PN  TF  
Sbjct: 381 KWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLA 440

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           VL+AC+     E G ++   MTR                           KV     +P 
Sbjct: 441 VLSACSISGLFERGWEIFQSMTR-------------------------DHKV-----KPR 470

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
            + +  +I    + G+ D+A   + L+ K+  QP   ++  +L AC   G ++ G   F 
Sbjct: 471 AMHFACMIELLGREGLLDEA---YALIRKAPFQPTANMWAALLRACRVHGNLELG--KFA 525

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           + K          +Y  ++++   SG+  EA DV   +  K  + L A
Sbjct: 526 AEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPA 573


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/475 (33%), Positives = 264/475 (55%), Gaps = 36/475 (7%)

Query: 5   LCNQRRLKEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L +  R KE L    ++S          ++  ++ C   R ++ GK +H+H+   GF   
Sbjct: 184 LVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTT 243

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           + ++N L  MY +CG          EMQ+  +C                    LF+ M +
Sbjct: 244 LCVANSLATMYTECG----------EMQD-GLC--------------------LFENMSE 272

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RD  SWT++I  Y R  Q ++A++ +  M+N +    N+ T +S+ SA +++  L  G++
Sbjct: 273 RDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVP-PNEQTFASMFSACASLSRLVWGEQ 331

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H  ++  G +    V +++  MY  CG++  A  +F  M  RD++SW+ +IG Y Q G 
Sbjct: 332 LHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGF 391

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EEGF  FS + +SG +P  F  A +L+   + A  E G+QVH      G +  S   S+
Sbjct: 392 GEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSS 451

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L++MYSKCG+++ +  +F    R D+VS T++I GYA++G   +A++ FE  LK G +PD
Sbjct: 452 LINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPD 511

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            + F+ VLTACTH+G +D G  YF+ ++E + +    +HY C+VDLL R+GR  +AE +I
Sbjct: 512 SVTFISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMI 571

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           ++M  K D  +W +LL  C+  G+++  +RAAE + E++P      VT+ANIY+S
Sbjct: 572 NEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSS 626



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 228/471 (48%), Gaps = 67/471 (14%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A++++     P  S+ S +++ C Q+  +  G+ +H++   +     V++ + LLDM
Sbjct: 93  LFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDM 152

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y + G I                               +++  +F EMP R+  +WTA+I
Sbjct: 153 YKRVGKI-------------------------------DKSCRVFSEMPFRNAVTWTAII 181

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +G V   +  E L  +  M   E  +S+ +T +  L A + ++ ++ GK IH +++  GF
Sbjct: 182 TGLVHAGRYKEGLTYFSEMSRSEE-LSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGF 240

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            +   V ++L+ MY +CG + +   +F+ M +RDVVSWT++I  Y + G+  +    F +
Sbjct: 241 VTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIK 300

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           +  S + PN  TFA + +ACA  +    G+Q+H  +  +G +     +++++ MYS CGN
Sbjct: 301 MRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGN 360

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           + ++  +F GM   D++SW+++I GY Q G  ++  +YF  + +SGT+P       +L+ 
Sbjct: 361 LVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSV 420

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA---------EDVIS 421
             +  +++ G Q  H++    GL   +   + ++++ ++ G   EA         +D++S
Sbjct: 421 SGNMAVIEGGRQ-VHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVS 479

Query: 422 -------------------------KMPMKPDKFLWASLLGGCRIHGNLDL 447
                                    K+  +PD   + S+L  C   G LDL
Sbjct: 480 LTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDL 530



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 174/344 (50%), Gaps = 3/344 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+ +      G+L  AR +FD+MP  D  SWT++I  YV  N   EAL L+  M+  +++
Sbjct: 44  NSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHA 103

Query: 156 VS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           VS +   LS VL A      +  G+ +H Y ++T   S   V S+L DMY + G I+++ 
Sbjct: 104 VSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSC 163

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++F +M  R+ V+WTA+I      GR +EG   FSE+ +S    + +TFA  L ACA   
Sbjct: 164 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLR 223

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             + GK +H ++   G+      A++L  MY++CG +++   +F  M   D+VSWTSLI 
Sbjct: 224 QVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIV 283

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            Y + G   KA+E F  +  S   P+   F  + +AC     +  G Q  H      GL 
Sbjct: 284 AYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQ-LHCNVLSLGLN 342

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +      ++ + +  G    A  +   M  + D   W++++GG
Sbjct: 343 DSLSVSNSMMKMYSTCGNLVSASVLFQGMRCR-DIISWSTIIGG 385



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/381 (19%), Positives = 140/381 (36%), Gaps = 106/381 (27%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++S+   C     L  G+++H ++ S G    + +SN ++ MY+ CGN+  A   
Sbjct: 308 PNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASV- 366

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         LF  M  RD  SW+ +I GY +     E  
Sbjct: 367 ------------------------------LFQGMRCRDIISWSTIIGGYCQAGFGEEGF 396

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             +  M+    +    F L+S+LS    +  +  G+++H   +  G + +  V S+L +M
Sbjct: 397 KYFSWMRQ-SGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINM 455

Query: 204 YGKCGSIN-------------------------------EARQIFDKMVDR----DVVSW 228
           Y KCGSI                                EA  +F+K +      D V++
Sbjct: 456 YSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTF 515

Query: 229 TAMIGRYFQEGRREEGFALFSELIKS-GIRP----------------------------- 258
            +++      G+ + GF  F+ + ++  +RP                             
Sbjct: 516 ISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMS 575

Query: 259 ---NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENS 314
              +   +  +L AC      E G++    +  +  DP  + A   L ++YS  GN+E +
Sbjct: 576 WKKDDVVWTTLLIACKAKGDIERGRRAAERILEL--DPTCATALVTLANIYSSTGNLEEA 633

Query: 315 KKVFNGMPRPDLVS---WTSL 332
             V   M    ++    W+S+
Sbjct: 634 ANVRKNMKAKGVIKEPGWSSI 654


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 252/451 (55%), Gaps = 34/451 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+   +S+++  C     L EG+++H+ +    F    F++  LLDMYAKCG       
Sbjct: 197 YPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCG------- 249

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                   S+  A N+FDEMP R+  SW +MI G+V+      A
Sbjct: 250 ------------------------SMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRA 285

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + ++R + +      ++ ++SSVLSA + +  L  GK++HG I++ G      V ++L D
Sbjct: 286 IGVFREVLSLG---PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVD 342

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG   +A ++F    DRDVV+W  MI   F+    E+    F  +I+ G+ P+  +
Sbjct: 343 MYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEAS 402

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           ++ + +A A  AA   G  +H ++ + G+   S  +S+LV MY KCG++ ++ +VF    
Sbjct: 403 YSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETK 462

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             ++V WT++I  + Q+G  ++A++ FE +L  G  P++I FV VL+AC+H G +D G +
Sbjct: 463 EHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFK 522

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+   H +    +HYAC+VDLL R GR  EA   I  MP +PD  +W +LLG C  H
Sbjct: 523 YFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKH 582

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            N+++ +  AE LF++EP+NP  Y+ ++NIY
Sbjct: 583 ANVEMGREVAERLFKLEPDNPGNYMLLSNIY 613



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 166/322 (51%), Gaps = 17/322 (5%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM- 220
           L  +L+  + ++ L+   +IH  ++ T   +     + L  +Y KCGSI+    +F+   
Sbjct: 100 LKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYP 159

Query: 221 -VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
               +VV+WT +I +  +  +  +    F+ +  +GI PN FTF+ +L ACA  A    G
Sbjct: 160 HPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +Q+H  + +  +    F A+AL+ MY+KCG++  ++ VF+ MP  +LVSW S+I G+ +N
Sbjct: 220 QQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKN 279

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV--DKGLQYFHSIKEKH--GLTY 395
            +  +A+  F  +L  G  PD +    VL+AC  AGLV  D G Q   SI ++   GL Y
Sbjct: 280 KLYGRAIGVFREVLSLG--PDQVSISSVLSAC--AGLVELDFGKQVHGSIVKRGLVGLVY 335

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +    +VD+  + G F +A  +      + D   W  ++ GC    N + A    +A+
Sbjct: 336 VKNS---LVDMYCKCGLFEDATKLFCGGGDR-DVVTWNVMIMGCFRCRNFEQACTYFQAM 391

Query: 456 FE--IEPENPATYVTMANIYAS 475
               +EP+  A+Y ++ +  AS
Sbjct: 392 IREGVEPDE-ASYSSLFHASAS 412


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 163/523 (31%), Positives = 279/523 (53%), Gaps = 49/523 (9%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +++ C    +++A ++  ++S  +   ++++++        EE  K+   + + G +P  
Sbjct: 52  LEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDH 111

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F+   +    ++  N    + ++D M     E + C   +++  F K G ++ AR  F+E
Sbjct: 112 FVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEE 171

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  +D F W  M+SGY    +  +AL+++R M   E    N  T++S +SA + +  LR 
Sbjct: 172 IEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMV-LEGVKPNSITIASAVSACTNLSLLRH 230

Query: 178 GKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEARQ--------------------- 215
           G+EIHGY ++    DSD +V ++L D Y KC S+  AR+                     
Sbjct: 231 GREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTG 290

Query: 216 ----------------------IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
                                 +F ++  RDVV W ++I    Q GR      L  E+  
Sbjct: 291 FTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL 350

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           S +  N  T    L AC+  AA   GK++H ++ R G D  +F  ++L+ MY +CG+++ 
Sbjct: 351 SNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQK 410

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           S+++F+ MP+ DLVSW  +I+ Y  +G    A+  F+     G +P+HI F  +L+AC+H
Sbjct: 411 SRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSH 470

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           +GL+++G +YF  +K ++ +    + YAC+VDLL+R+G+F+E  + I KMP +P+  +W 
Sbjct: 471 SGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWG 530

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           SLLG CRIH N DLA+ AA  LFE+EP++   YV MANIY++A
Sbjct: 531 SLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAA 573



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 228/464 (49%), Gaps = 58/464 (12%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           IY+S++Q CR+   L  G +VH+ L  +G     F+ + LL++Y + G + DA+ +FD+M
Sbjct: 12  IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM 71

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            ER+V                               FSWTA++  Y       E + L+ 
Sbjct: 72  SERNV-------------------------------FSWTAIMEMYCGLGDYEETIKLFY 100

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           +M N E    + F    V  A S ++  R+GK+++ Y++  GF+ +  V  ++ DM+ KC
Sbjct: 101 LMVN-EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKC 159

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G ++ AR+ F+++  +DV  W  M+  Y  +G  ++   +F +++  G++PN+ T A  +
Sbjct: 160 GRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAV 219

Query: 268 NACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           +AC + +    G+++HGY  ++   D      ++LV  Y+KC +VE +++ F  + + DL
Sbjct: 220 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 279

Query: 327 VSWTSLIA--GYAQNGMPDKALEYFELL------LKSGTQPDHIVFVGVLTACTHAGLVD 378
           VSW +++A  G+ Q G    ALE+F+ +          +  D +V+  +++AC  +G   
Sbjct: 280 VSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSV 339

Query: 379 KGLQYFHSIK----EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             L     +     E + +T  +   AC      R G+  E    I +  +    F+  S
Sbjct: 340 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGK--EIHQFIIRCGLDTCNFILNS 397

Query: 435 LL---GGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYA 474
           L+   G C   G++  ++R    +F++ P+ +  ++  M ++Y 
Sbjct: 398 LIDMYGRC---GSIQKSRR----IFDLMPQRDLVSWNVMISVYG 434


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 252/450 (56%), Gaps = 41/450 (9%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF----ISNCLLDMYAKCGNISDAQTLFDE 86
           S++Q C     +  G+ VH     SG K  V       N LLDMYAKC            
Sbjct: 3   SILQACANCGDVSLGRAVHG----SGVKACVHWKTTFCNTLLDMYAKC------------ 46

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                              G L+ A  +FD M  R   +WT++I+ Y R     EA+ L+
Sbjct: 47  -------------------GVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLF 87

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M   E    + FT+++VL A +    L  GK++H YI      S+  V +AL DMY K
Sbjct: 88  HEMDR-EGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAK 146

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CGS+ +A  +F +M  +D++SW  MIG Y +     E  +LF +++   ++P+  T A +
Sbjct: 147 CGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACI 205

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L ACA  A+ + GK+VHG++ R G+      A+ALV MY KCG    ++ +F+ +P  DL
Sbjct: 206 LPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDL 265

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           ++WT +IAGY  +G  + A+  F  + ++G +PD + F+ +L AC+H+GL+D+G ++F+ 
Sbjct: 266 ITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNV 325

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           ++++  +    +HYACIVDLLARSG+   A   I  MP++PD  +W +LL GCRIH ++ 
Sbjct: 326 MQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVK 385

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA++ AE +FE+EPEN   YV +AN YA A
Sbjct: 386 LAEKVAEHVFELEPENTGYYVLLANTYAEA 415



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 171/329 (51%), Gaps = 39/329 (11%)

Query: 13  EALQILHQISHP--SPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA+++ H++     SP I++  +++  C  N +LE GK VH++++ +  +  +F+ N L+
Sbjct: 82  EAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALM 141

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKCG++ DA ++F EM  +D+ S+NTMI G++K     +A +LF +M          
Sbjct: 142 DMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM---------- 191

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                V   +P                  +  TL+ +L A +++  L  GKE+HG+I+R 
Sbjct: 192 -----VLEMKP------------------DGTTLACILPACASLASLDRGKEVHGHILRN 228

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF SD+ V +AL DMY KCG    AR +FD +  +D+++WT MI  Y   G        F
Sbjct: 229 GFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTF 288

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSK 307
           +E+ ++GI P+  +F  +L AC+     + G +    M       P     + +V + ++
Sbjct: 289 NEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLAR 348

Query: 308 CGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            G +  + K    MP  PD   W +L++G
Sbjct: 349 SGKLAMAYKFIKSMPIEPDATIWGALLSG 377


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 251/447 (56%), Gaps = 33/447 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S+   C  +R +  G+ VHS    + F       N LLDMY+KC                
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC---------------- 193

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A+ +F EM  R   S+T+MI+GY R     EA+ L+  M+
Sbjct: 194 ---------------GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    + +T+++VL+  +  + L  GK +H +I       D  V +AL DMY KCGS+
Sbjct: 239 E-EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNA 269
            EA  +F +M  +D++SW  +IG Y +     E  +LF+ L++     P+  T A VL A
Sbjct: 298 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 357

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA  +A + G+++HGY+ R GY      A++LV MY+KCG +  +  +F+ +   DLVSW
Sbjct: 358 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 417

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T +IAGY  +G   +A+  F  + ++G + D I FV +L AC+H+GLVD+G ++F+ ++ 
Sbjct: 418 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 477

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +  +  T +HYACIVD+LAR+G   +A   I  MP+ PD  +W +LL GCRIH ++ LA+
Sbjct: 478 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 537

Query: 450 RAAEALFEIEPENPATYVTMANIYASA 476
           + AE +FE+EPEN   YV MANIYA A
Sbjct: 538 KVAEKVFELEPENTGYYVLMANIYAEA 564



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 214/409 (52%), Gaps = 43/409 (10%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           R++  G+++H  +  SGF     + N L+  Y K   +  A+ +FDEM ERDV S+N++I
Sbjct: 58  RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 117

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
           +G+   G  E+  ++F +M          ++SG       IE +DL              
Sbjct: 118 NGYVSNGLAEKGLSVFVQM----------LVSG-------IE-IDLA------------- 146

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T+ SV +  +  + + LG+ +H   ++  F  ++   + L DMY KCG ++ A+ +F +
Sbjct: 147 -TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFRE 205

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M DR VVS+T+MI  Y +EG   E   LF E+ + GI P+ +T   VLN CA +   + G
Sbjct: 206 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 265

Query: 280 KQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           K+VH ++    +G+D   F ++AL+ MY+KCG+++ ++ VF+ M   D++SW ++I GY+
Sbjct: 266 KRVHEWIKENDLGFDI--FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 323

Query: 338 QNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           +N   ++AL  F LLL+     PD      VL AC      DKG +  H    ++G  Y 
Sbjct: 324 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNG--YF 380

Query: 397 ADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +D +    +VD+ A+ G    A  +   +  K D   W  ++ G  +HG
Sbjct: 381 SDRHVANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMHG 428



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 175/324 (54%), Gaps = 3/324 (0%)

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           FDE+       W  +++   +      ++ L++ M +      + +T S V  + S+++ 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCVSKSFSSLRS 59

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           +  G+++HG+I+++GF     V ++L   Y K   ++ AR++FD+M +RDV+SW ++I  
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Y   G  E+G ++F +++ SGI  +  T   V   CAD     LG+ VH    +  +   
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
               + L+ MYSKCG+++++K VF  M    +VS+TS+IAGYA+ G+  +A++ FE + +
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
            G  PD      VL  C    L+D+G +    IKE + L +       ++D+ A+ G   
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE-NDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 415 EAEDVISKMPMKPDKFLWASLLGG 438
           EAE V S+M +K D   W +++GG
Sbjct: 299 EAELVFSEMRVK-DIISWNTIIGG 321


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 257/462 (55%), Gaps = 34/462 (7%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +L   S P    +  +++ C        G+++H H+   G +   F+   L+ MY KCG 
Sbjct: 44  MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGL 103

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS--WTAMISGYV 134
           ++DA                               R +F+E PQ    S  + A+ISGY 
Sbjct: 104 VADA-------------------------------RKVFEENPQSSQLSVCYNALISGYT 132

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
             ++  +A  ++R M+    SV +  T+  ++   +  + L LG+ +HG  ++ G DS+ 
Sbjct: 133 ANSKVTDAAYMFRRMKETGVSV-DSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V ++   MY KCGS+   R++FD+M  + +++W A+I  Y Q G   +   L+ ++  S
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSS 251

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G+ P+ FT   VL++CA   A+++G +V   +   G+ P  F ++A + MY++CGN+  +
Sbjct: 252 GVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKA 311

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + VF+ MP   LVSWT++I  Y  +GM +  L  F+ ++K G +PD  VFV VL+AC+H+
Sbjct: 312 RAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHS 371

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GL DKGL+ F ++K ++ L    +HY+C+VDLL R+GR  EA + I  MP++PD  +W +
Sbjct: 372 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGA 431

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LLG C+IH N+D+A+ A   + E EP N   YV M+NIY+ +
Sbjct: 432 LLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDS 473



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 4/213 (1%)

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W   +     +    E  +L+  +++SG  P+AF+F  +L +CA  +    G+Q+H ++T
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS--WTSLIAGYAQNGMPDKA 345
           + G +   F  +AL+ MY KCG V +++KVF   P+   +S  + +LI+GY  N     A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
              F  + ++G   D +  +G++  CT    +  G +  H    K GL          + 
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLG-RSLHGQCVKGGLDSEVAVLNSFIT 199

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +  + G       +  +MP+K     W +++ G
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVK-GLITWNAVISG 231


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 254/454 (55%), Gaps = 35/454 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+    S++I+ C +   L+ G+  H  +   GF     I++ L+DM+ +         
Sbjct: 158 EPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGR--------- 208

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                   +L+ AR LFDE+ + D   WT++IS   R +   EA
Sbjct: 209 ----------------------NCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEA 246

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L  +  MQ       + FT  +VL+A   +  L+ GKE+H  ++ TGF  + VV S+L D
Sbjct: 247 LRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVD 306

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MYGKCGS+ E+++IFD+M  ++ VSW+A++G Y Q G  +    +F ++ K     + + 
Sbjct: 307 MYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV----DLYC 362

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  +L  CA  AA   GK+VH    R G        SALV +Y+KCG +E ++ +F+ MP
Sbjct: 363 FGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP 422

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +L++W S+I G+AQNG  ++AL  F  ++K G +PD+I F+G+L AC+H GLVD+G +
Sbjct: 423 VRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE 482

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+ + +G+    +HY+C+VDLL R+G   EAE +I     + D  LWA+LLG C   
Sbjct: 483 YFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTC 542

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N ++A+R A+ + E+EP+   +YV +AN+Y + 
Sbjct: 543 TNYEIAERIAKRVMELEPDYHLSYVLLANVYKAV 576



 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 233/464 (50%), Gaps = 44/464 (9%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           LC    L  ALQ+L  I        P +Y+SL+Q C +  A   G ++H+H+  SG +  
Sbjct: 34  LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFD 93

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            F+ N LL +Y K G                                  + R +FD +  
Sbjct: 94  RFVGNSLLTLYFKLGT------------------------------DFPETRKVFDGLFV 123

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +D  SWT+MISGYVR  +P+ +L+L+  M  +     N FTLS+V+ A S +  L+LG+ 
Sbjct: 124 KDVISWTSMISGYVRVGKPMNSLELFWKMLAY-GVEPNAFTLSAVIKACSELGDLKLGRI 182

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
            HG ++  GFDS+ V+ SAL DM+G+  ++++ARQ+FD++++ D + WT++I    +   
Sbjct: 183 FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDF 242

Query: 241 REEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
            +E    F  + +  G+ P+ FTF  VL AC +    + GK+VH  +   G+       S
Sbjct: 243 FDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVES 302

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +LV MY KCG+V  S+++F+ MP  + VSW++L+ GY QNG     ++ F  + K     
Sbjct: 303 SLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV---- 358

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D   F  +L  C     V +G +       K G        A +VDL A+ G    A+ +
Sbjct: 359 DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESA-LVDLYAKCGCIEYAQTI 417

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPE 461
             +MP++ +   W S++GG   +G  + A R    + +  I+P+
Sbjct: 418 FDQMPVR-NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPD 460



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 168/344 (48%), Gaps = 51/344 (14%)

Query: 2   IDILCNQRRLKEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           I  L       EAL+  + +       P    + +++  C     L++GK+VH+ + ++G
Sbjct: 234 ISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTG 293

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
           F   V + + L+DMY KCG++ ++Q +FD M  ++  S++ ++ G+ + G  +    +F 
Sbjct: 294 FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFR 353

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +M                      E +DLY                 ++L   + +  +R
Sbjct: 354 KM----------------------EKVDLY--------------CFGTILRTCAGLAAVR 377

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            GKE+H   +R G   D +V SAL D+Y KCG I  A+ IFD+M  R++++W +MIG + 
Sbjct: 378 QGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFA 437

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-----RIGY 291
           Q GR EE   +F++++K GI+P+  +F G+L AC+     + G++    MT     ++G 
Sbjct: 438 QNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGI 497

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
           + Y    S +V +  + G +E ++ +      R D   W +L+ 
Sbjct: 498 EHY----SCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLG 537


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 249/440 (56%), Gaps = 33/440 (7%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +L   A+ G I DA+ LFD++ E +V S+N MI+G+ +   +++A +LF+ MP R+  SW
Sbjct: 327 MLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISW 386

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             MI+GY R  +  +AL   + +   +  + +  +L+S   A S I+ L  GK++H   +
Sbjct: 387 AGMIAGYARNGRSEQALVSLQALHR-KGMLPSLSSLTSSFFACSNIEALETGKQVHSLAV 445

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD---------------------- 224
           + G   +  V +AL  +YGK  SI   RQIFD+M  +D                      
Sbjct: 446 KAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARD 505

Query: 225 ---------VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
                    VVSWT +I    Q  +  E   +F  ++     PN      +L    +  A
Sbjct: 506 VFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGA 565

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            +LG+Q+H    ++G D     A+ALV MY KC + + S KVF+ M   D+ +W ++I G
Sbjct: 566 PQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITG 624

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           YAQ+G+  +A+  ++L++ +G  P+ + FVG+L AC+H+GLVD+G Q+F S+   +GLT 
Sbjct: 625 YAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTP 684

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HYAC+VDLL R+G    AE  I  MP++PD  +W++LLG C+IH N+++ +RAAE L
Sbjct: 685 LLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKL 744

Query: 456 FEIEPENPATYVTMANIYAS 475
           F IEP N   YV ++NIY+S
Sbjct: 745 FSIEPSNAGNYVMLSNIYSS 764



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 202/437 (46%), Gaps = 54/437 (12%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++  Y + G+I+ A+ LFD M  RDV S+NTM++G+     +E+ARNLF+ MP+R+  
Sbjct: 130 NAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGV 189

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWT MISGYV   Q   A D++R M   E     +  L SVLSAV  +    + + IH  
Sbjct: 190 SWTVMISGYVLIEQHGRAWDMFRTML-CEGMTPEQPNLVSVLSAVRHLGKPGILESIHVL 248

Query: 185 IMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           + +TGF+ D VV +A+ + Y K    ++ A + F+ M  R+  +W+ +I    Q GR ++
Sbjct: 249 VHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDD 308

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
            FA++       +        G+        A+ L  Q+H        +P   + +A++ 
Sbjct: 309 AFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIH--------EPNVVSWNAMIT 360

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            Y +   V+ ++ +FN MP  + +SW  +IAGYA+NG  ++AL   + L + G  P    
Sbjct: 361 GYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSS 420

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--------------------- 402
                 AC++   ++ G Q  HS+  K G  + +  Y C                     
Sbjct: 421 LTSSFFACSNIEALETGKQ-VHSLAVKAGCQFNS--YVCNALITLYGKYRSIGSVRQIFD 477

Query: 403 ------------IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
                        +  L ++  F EA DV + MP  PD   W +++  C      D    
Sbjct: 478 RMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP-SPDVVSWTTIISAC---AQADQGNE 533

Query: 451 AAE----ALFEIEPENP 463
           A E     L E E  NP
Sbjct: 534 AVEIFRSMLHERELPNP 550



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 161/302 (53%), Gaps = 4/302 (1%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C    ALE GK+VHS    +G +   ++ N L+ +Y K  +I   + +FD M  +D  SY
Sbjct: 428 CSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSY 487

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+ +S   +    ++AR++F+ MP  D  SWT +IS   + +Q  EA++++R M + E  
Sbjct: 488 NSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLH-ERE 546

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           + N   L+ +L     +   +LG++IH   ++ G DS  VV +AL  MY KC S  ++ +
Sbjct: 547 LPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA-DSLK 605

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD M +RD+ +W  +I  Y Q G   E   ++  ++ +G+ PN  TF G+L+AC+    
Sbjct: 606 VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGL 665

Query: 276 EELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLI 333
            + G Q    M+   G  P     + +V +  + G+V+ ++     MP  PD V W++L+
Sbjct: 666 VDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALL 725

Query: 334 AG 335
             
Sbjct: 726 GA 727



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 126/314 (40%), Gaps = 85/314 (27%)

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
           G+ G ++EAR++FD M  RD+++W +MI  Y   G  + G +L   +    +R      +
Sbjct: 44  GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLS 103

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           G   A     A  +     G   R      + A +A+V  Y + G++  ++K+F+ MP  
Sbjct: 104 GYARAGRVRDARRV---FDGMGVR-----NTVAWNAMVTCYVQNGDITLARKLFDAMPSR 155

Query: 325 DLVSWTSLIAGYAQNG-----------MPD--------------------KALEYFELLL 353
           D+ SW +++ GY  +            MP+                    +A + F  +L
Sbjct: 156 DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTML 215

Query: 354 KSGTQPDHIVFVGVLTACTHAG------------------------------------LV 377
             G  P+    V VL+A  H G                                    ++
Sbjct: 216 CEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNML 275

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK--PDKFLWASL 435
           D  +++F  +  ++  T++      I+  L+++GR  +A  V  + P+K  P +    S+
Sbjct: 276 DSAVKFFEGMAARNEYTWST-----IIAALSQAGRIDDAFAVYQRDPLKSVPSR---TSM 327

Query: 436 LGGCRIHGNLDLAK 449
           L G   +G +D AK
Sbjct: 328 LTGLARYGRIDDAK 341



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 25/187 (13%)

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
           P + A SA +    + G +  +++VF+ MP  D+++W S+I  Y  NGMPD      + +
Sbjct: 31  PGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAI 90

Query: 353 ----LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
               L++GT         +L+    AG V    + F  +  ++ + + A     +V    
Sbjct: 91  SGGNLRTGTI--------LLSGYARAGRVRDARRVFDGMGVRNTVAWNA-----MVTCYV 137

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGG-CRIHGNLDLAKRAAEALFEIEPE-NPATY 466
           ++G    A  +   MP + D   W ++L G C  H  L      A  LFE  PE N  ++
Sbjct: 138 QNGDITLARKLFDAMPSR-DVSSWNTMLTGYC--HSQL---MEEARNLFERMPERNGVSW 191

Query: 467 VTMANIY 473
             M + Y
Sbjct: 192 TVMISGY 198


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 257/454 (56%), Gaps = 36/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   ++S+I+ C   R L   K +      SGF     +   L+   +KC  + DA +L
Sbjct: 293 PTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSL 352

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M+E                               ++  SWTAMISG ++     +A+
Sbjct: 353 FSLMEE------------------------------GKNVVSWTAMISGCLQNGGNDQAV 382

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M+  E    N FT S++L+    +       E+H  +++T ++    V +AL D 
Sbjct: 383 NLFSQMRR-EGVKPNHFTYSAILTVHYPV----FVSEMHAEVIKTNYERSSSVGTALLDA 437

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G+  +A ++F+ +  +D+++W+AM+  Y Q G  EE   LF +LIK GI+PN FTF
Sbjct: 438 YVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTF 497

Query: 264 AGVLNACAD-HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           + V+NACA   AA E GKQ H Y  ++  +     +SALV MY+K GN++++ +VF    
Sbjct: 498 SSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK 557

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DLVSW S+I+GY+Q+G   KALE F+ + K     D + F+GV+TACTHAGLV+KG +
Sbjct: 558 ERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQK 617

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+   H +  T  HY+C++DL +R+G   +A  +I++MP  P   +W +LLG  R+H
Sbjct: 618 YFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVH 677

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++L + AAE L  ++PE+ A YV ++N+YA+A
Sbjct: 678 RNVELGELAAEKLISLQPEDSAAYVLLSNMYAAA 711



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 199/375 (53%), Gaps = 10/375 (2%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E  +  +N++IS +++ G L  AR++FD+M  RD  +W +MI+GYVR  Q +E  +++  
Sbjct: 226 EEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNK 285

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           MQ          T +SV+ + ++++ L L K +    +++GF +D++V +AL     KC 
Sbjct: 286 MQ-LAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCK 344

Query: 209 SINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
            +++A  +F  M + ++VVSWTAMI    Q G  ++   LFS++ + G++PN FT++ +L
Sbjct: 345 EMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
                    E+    H  + +  Y+  S   +AL+  Y K GN  ++ KVF  +   DL+
Sbjct: 405 TVHYPVFVSEM----HAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLM 460

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           +W++++AGYAQ G  ++A + F  L+K G +P+   F  V+ AC       +  + FH+ 
Sbjct: 461 AWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAY 520

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             K  L       + +V + A+ G    A +V  +   + D   W S++ G   HG    
Sbjct: 521 AIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYSQHGQ--- 576

Query: 448 AKRAAEALFEIEPEN 462
           AK+A E   E++  N
Sbjct: 577 AKKALEVFDEMQKRN 591



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 233/474 (49%), Gaps = 46/474 (9%)

Query: 9   RRLKEALQI----LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           ++ KEAL +    LH    P  S  S +   C  +   + G++VH      G    V + 
Sbjct: 72  KQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVG 131

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
             L+DMY K  N++D + +FDEM ER+V S+ ++++G                      +
Sbjct: 132 TSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAG----------------------Y 169

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW  +  GYV         +L+  MQ +E  + N++T+S+V++A+     + +G ++H  
Sbjct: 170 SWNGLY-GYV--------WELFCQMQ-YEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAM 219

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +++ GF+    V+++L  +Y + G + +AR +FDKM  RD V+W +MI  Y + G+  E 
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
           F +F+++  +G++P   TFA V+ +CA      L K +     + G+       +AL+  
Sbjct: 280 FEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVA 339

Query: 305 YSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            SKC  ++++  +F+ M    ++VSWT++I+G  QNG  D+A+  F  + + G +P+H  
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFT 399

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           +  +LT      + +   +   +  E+     TA     ++D   + G   +A  V   +
Sbjct: 400 YSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTA-----LLDAYVKLGNTIDAVKVFEII 454

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
             K D   W+++L G    G  + A +    L +  I+P N  T+ ++ N  AS
Sbjct: 455 EAK-DLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKP-NEFTFSSVINACAS 506



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 174/342 (50%), Gaps = 8/342 (2%)

Query: 111 ARNLFDEMPQRDNF--SWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLS 167
           A NLFD++P R         ++  Y R  Q  EAL+L+  +    +S+  ++ TLS V +
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSL--LHSSLQPDESTLSCVFN 101

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             +     +LG+++H   ++ G      V ++L DMY K  ++N+ R++FD+M +R+VVS
Sbjct: 102 ICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           WT+++  Y   G     + LF ++   G+ PN +T + V+ A  +     +G QVH  + 
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV 221

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           + G++      ++L+ +YS+ G + +++ VF+ M   D V+W S+IAGY +NG   +  E
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFE 281

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE-KHGLTYTADHYACIVDL 406
            F  +  +G +P H+ F  V+ +C  A L +  L      K  K G T        ++  
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSC--ASLRELALVKLMQCKALKSGFTTDQIVITALMVA 339

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           L++     +A  + S M    +   W +++ GC  +G  D A
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQA 381



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQ-NRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +EA ++ HQ+      P+   +SS+I  C     A E+GK+ H++         + +S+ 
Sbjct: 476 EEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSA 535

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           L+ MYAK GNI  A  +F   +ERD+ S+N+MISG+++ G  ++A  +FDEM +R+
Sbjct: 536 LVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRN 591


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 254/454 (55%), Gaps = 35/454 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+    S++I+ C +   L+ G+  H  +   GF     I++ L+DM+ +         
Sbjct: 217 EPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGR--------- 267

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                   +L+ AR LFDE+ + D   WT++IS   R +   EA
Sbjct: 268 ----------------------NCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEA 305

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L  +  MQ       + FT  +VL+A   +  L+ GKE+H  ++ TGF  + VV S+L D
Sbjct: 306 LRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVD 365

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MYGKCGS+ E+++IFD+M  ++ VSW+A++G Y Q G  +    +F ++ K     + + 
Sbjct: 366 MYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV----DLYC 421

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  +L  CA  AA   GK+VH    R G        SALV +Y+KCG +E ++ +F+ MP
Sbjct: 422 FGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP 481

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +L++W S+I G+AQNG  ++AL  F  ++K G +PD+I F+G+L AC+H GLVD+G +
Sbjct: 482 VRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE 541

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+ + +G+    +HY+C+VDLL R+G   EAE +I     + D  LWA+LLG C   
Sbjct: 542 YFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTC 601

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N ++A+R A+ + E+EP+   +YV +AN+Y + 
Sbjct: 602 TNYEIAERIAKRVMELEPDYHLSYVLLANVYKAV 635



 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 233/464 (50%), Gaps = 44/464 (9%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           LC    L  ALQ+L  I        P +Y+SL+Q C +  A   G ++H+H+  SG +  
Sbjct: 93  LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFD 152

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            F+ N LL +Y                              F  G    + R +FD +  
Sbjct: 153 RFVGNSLLTLY------------------------------FKLGTDFPETRKVFDGLFV 182

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +D  SWT+MISGYVR  +P+ +L+L+  M  +     N FTLS+V+ A S +  L+LG+ 
Sbjct: 183 KDVISWTSMISGYVRVGKPMNSLELFWKMLAY-GVEPNAFTLSAVIKACSELGDLKLGRI 241

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
            HG ++  GFDS+ V+ SAL DM+G+  ++++ARQ+FD++++ D + WT++I    +   
Sbjct: 242 FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDF 301

Query: 241 REEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
            +E    F  + +  G+ P+ FTF  VL AC +    + GK+VH  +   G+       S
Sbjct: 302 FDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVES 361

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +LV MY KCG+V  S+++F+ MP  + VSW++L+ GY QNG     ++ F  + K     
Sbjct: 362 SLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV---- 417

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D   F  +L  C     V +G +       K G        A +VDL A+ G    A+ +
Sbjct: 418 DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESA-LVDLYAKCGCIEYAQTI 476

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPE 461
             +MP++ +   W S++GG   +G  + A R    + +  I+P+
Sbjct: 477 FDQMPVR-NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPD 519



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 166/333 (49%), Gaps = 51/333 (15%)

Query: 13  EALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           EAL+  + +       P    + +++  C     L++GK+VH+ + ++GF   V + + L
Sbjct: 304 EALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSL 363

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY KCG++ ++Q +FD M  ++  S++ ++ G+ + G  +    +F +M         
Sbjct: 364 VDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM--------- 414

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                        E +DLY                 ++L   + +  +R GKE+H   +R
Sbjct: 415 -------------EKVDLY--------------CFGTILRTCAGLAAVRQGKEVHCQYIR 447

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G   D +V SAL D+Y KCG I  A+ IFD+M  R++++W +MIG + Q GR EE   +
Sbjct: 448 KGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRI 507

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-----RIGYDPYSFAASALV 302
           F++++K GI+P+  +F G+L AC+     + G++    MT     ++G + Y    S +V
Sbjct: 508 FNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHY----SCMV 563

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
            +  + G +E ++ +      R D   W +L+ 
Sbjct: 564 DLLGRAGLLEEAEILIETSDFRDDSSLWAALLG 596


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 176/481 (36%), Positives = 258/481 (53%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC    LK+AL +L    +P+   +  LI  C Q  +L  G  VH  L  SGF    
Sbjct: 54  IQSLCKGGNLKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDP 113

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F++  L++MY + G                               S+++A  +FDE  +R
Sbjct: 114 FLATKLINMYYELG-------------------------------SIDRALKVFDETRER 142

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA--VSAIQC--LRL 177
             + W A+           E LDLY  M N+  + S++FT + VL A  VS +    LR 
Sbjct: 143 TIYVWNALFRALAMVGHGKELLDLYIQM-NWIGTPSDRFTYTYVLKACVVSELSVCPLRK 201

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIH +I+R G++++  V + L D+Y K GS++ A  +F  M  ++ VSW+AMI  + +
Sbjct: 202 GKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK 261

Query: 238 EGRREEGFALFSELIKSGIR--PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                +   LF  ++       PN+ T   +L ACA  AA E GK +HGY+ R   D   
Sbjct: 262 NEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSIL 321

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              +AL+ MY +CG V   ++VF+ M + D+VSW SLI+ Y  +G   KA++ FE ++  
Sbjct: 322 PVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P +I F+ VL AC+HAGLV++G   F S+  K+ +    +HYAC+VDLL R+ R  E
Sbjct: 382 GVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGE 441

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  +I  M  +P   +W SLLG CRIH N++LA+RA+  LFE+EP N   YV +A+IYA 
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAE 501

Query: 476 A 476
           A
Sbjct: 502 A 502


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 260/471 (55%), Gaps = 38/471 (8%)

Query: 11  LKEAL----QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L EAL     +L   + P      SL+        L++GK+VH ++  +      F+ + 
Sbjct: 324 LDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSA 383

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+Y KC               RDV                  ARNL+D     D    
Sbjct: 384 LVDIYFKC---------------RDV----------------RTARNLYDAARAIDVVIG 412

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           + +ISGYV      +AL ++R +   E  +  N  T++SVL A ++I  L LG+EIHGY+
Sbjct: 413 STVISGYVLNGMSEKALQMFRYL--LEQCIKPNAVTVASVLPACASISALPLGQEIHGYV 470

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +R  ++    V SAL DMY KCG ++ +  IF KM  +D V+W +MI  + Q G  +E  
Sbjct: 471 LRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEAL 530

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF ++   GI+ N  T +  L+ACA   A   GK++HG + +       FA SAL+ MY
Sbjct: 531 DLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMY 590

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCGN+E + +VF  MP  + VSW S+I+ Y  +G+  +++ +   + + G +PDH+ F+
Sbjct: 591 AKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFL 650

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +++AC HAGLV++GLQ F  + +++ +    +H+AC+VDL +RSGR  +A   I+ MP 
Sbjct: 651 ALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPF 710

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           KPD  +W +LL  CR+H N++LA  A++ LF+++P N   YV M+NI A A
Sbjct: 711 KPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVA 761



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 202/415 (48%), Gaps = 36/415 (8%)

Query: 24  PSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           PSP  ++   +++ C    A+  G+ VH   +++G    V++ + L+ MY      SDA 
Sbjct: 137 PSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMY------SDA- 189

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                   G L  AR+ FD MP RD   W  M+ GY++      
Sbjct: 190 ------------------------GLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGG 225

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+ L+R M+       N  TL+  LS  +A   L  G ++H   ++ G + +  V + L 
Sbjct: 226 AVRLFRNMR-VSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLL 284

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
            MY KC  +++A ++F+ +   D+V+W  MI    Q G  +E   LF ++++SG RP++ 
Sbjct: 285 SMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSV 344

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   +L A  D    + GK+VHGY+ R      +F  SALV +Y KC +V  ++ +++  
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAA 404

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+V  +++I+GY  NGM +KAL+ F  LL+   +P+ +    VL AC     +  G 
Sbjct: 405 RAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLG- 463

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           Q  H    ++         + ++D+ A+ GR   +  + SKM +K D+  W S++
Sbjct: 464 QEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMI 517



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 143/302 (47%), Gaps = 11/302 (3%)

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           +  ++  +        A  +F  +P+     +  W  +I G+        A+  Y  M  
Sbjct: 73  HTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWT 132

Query: 152 FENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
              + S +  TL  V+ + +A+  + LG+ +H     TG  SD  V SAL  MY   G +
Sbjct: 133 HPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLL 192

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +AR  FD M  RD V W  M+  Y + G       LF  +  SG  PN  T A  L+ C
Sbjct: 193 RDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVC 252

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  A    G Q+H    + G +     A+ L+ MY+KC  ++++ ++F  +PR DLV+W 
Sbjct: 253 AAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWN 312

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +I+G  QNG+ D+AL  F  +L+SG +PD +  V +L A T    + +G       KE 
Sbjct: 313 GMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQG-------KEV 365

Query: 391 HG 392
           HG
Sbjct: 366 HG 367


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 267/499 (53%), Gaps = 40/499 (8%)

Query: 14  ALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           A Q+   I  P+  I++++I+ + R N   + G  ++  + +S  KP  F    LL  + 
Sbjct: 60  ARQVFDAIPQPTLFIWNTMIKGYSRINHP-QNGVSMYLLMLASNIKPDRFTFPFLLKGFT 118

Query: 73  KCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           +   +   + L +   +     ++      I  F+    ++ AR +FD     +  +W  
Sbjct: 119 RNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNI 178

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           M+SGY R  Q  ++  L+  M+  +  VS N  TL  +LSA S ++ L  GK I+ YI  
Sbjct: 179 MLSGYNRVKQFKKSKMLFIEME--KRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING 236

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV---------------------- 225
              + + ++ + L DM+  CG ++EA+ +FD M +RDV                      
Sbjct: 237 GIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKY 296

Query: 226 ---------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
                    VSWTAMI  Y +  R  E  ALF E+  S ++P+ FT   +L ACA   A 
Sbjct: 297 FDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGAL 356

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           ELG+ V  Y+ +      +F  +AL+ MY KCGNV  +KKVF  M   D  +WT++I G 
Sbjct: 357 ELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGL 416

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           A NG  ++AL  F  ++++   PD I ++GVL ACTHAG+V+KG  +F S+  +HG+   
Sbjct: 417 AINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPN 476

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
             HY C+VDLL R+GR  EA +VI  MP+KP+  +W SLLG CR+H N+ LA+ AA+ + 
Sbjct: 477 VTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQIL 536

Query: 457 EIEPENPATYVTMANIYAS 475
           E+EPEN A YV + NIYA+
Sbjct: 537 ELEPENGAVYVLLCNIYAA 555



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 180/372 (48%), Gaps = 34/372 (9%)

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           + G +  AR +FD +PQ   F W  MI GY R N P   + +Y +M    N   ++FT  
Sbjct: 53  ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLA-SNIKPDRFTFP 111

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            +L   +    L+ GK +  + ++ GFDS+  V  A   M+  C  ++ AR++FD     
Sbjct: 112 FLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAW 171

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           +VV+W  M+  Y +  + ++   LF E+ K G+ PN+ T   +L+AC+     E GK ++
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY 231

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y+     +      + L+ M++ CG ++ ++ VF+ M   D++SWTS++ G+A  G  D
Sbjct: 232 KYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQID 291

Query: 344 KALEYFELLLK-------------------------------SGTQPDHIVFVGVLTACT 372
            A +YF+ + +                               S  +PD    V +LTAC 
Sbjct: 292 LARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACA 351

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           H G ++ G ++  +  +K+ +         ++D+  + G   +A+ V  +M  K DKF W
Sbjct: 352 HLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK-DKFTW 409

Query: 433 ASLLGGCRIHGN 444
            +++ G  I+G+
Sbjct: 410 TAMIVGLAINGH 421



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 12/278 (4%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDM--YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           K+IH + ++ G  SD +    +       + G +  ARQ+FD +    +  W  MI  Y 
Sbjct: 24  KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYS 83

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           +    + G +++  ++ S I+P+ FTF  +L     + A + GK +  +  + G+D   F
Sbjct: 84  RINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLF 143

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
              A +HM+S C  V+ ++KVF+     ++V+W  +++GY +     K+   F  + K G
Sbjct: 144 VQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRG 203

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK----EKHGLTYTADHYACIVDLLARSGR 412
             P+ +  V +L+AC+    ++ G   +  I     E++ +         ++D+ A  G 
Sbjct: 204 VSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV-----LIDMFAACGE 258

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             EA+ V   M  + D   W S++ G    G +DLA++
Sbjct: 259 MDEAQSVFDNMKNR-DVISWTSIVTGFANIGQIDLARK 295


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 258/458 (56%), Gaps = 6/458 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+++ C +   +  G+ VH  ++ S +K  +++ N L+ MY +  N+  A+ L
Sbjct: 142 PDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRL 201

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQP 139
           FD M ERD  S+N +I+ +   G   +A  LFD+M     +    +W  +  G ++    
Sbjct: 202 FDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNY 261

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           + AL L   M+NF  S+ +   +   L A S I  +RLGKEIHG  + + +D  + V + 
Sbjct: 262 VGALGLISRMRNFPTSL-DPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNT 320

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY KC  +  A  +F +  +  + +W ++I  Y Q  + EE   L  E++ +G +PN
Sbjct: 321 LITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPN 380

Query: 260 AFTFAGVLNACADHAAEELGKQVHGY-MTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           + T A +L  CA  A  + GK+ H Y + R  +  Y+   ++LV +Y+K G +  +K+V 
Sbjct: 381 SITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVS 440

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + M + D V++TSLI GY   G    AL  F+ + +SG +PDH+  V VL+AC+H+ LV 
Sbjct: 441 DLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVH 500

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G + F  ++ ++G+     H++C+VDL  R+G   +A+D+I  MP KP    WA+LL  
Sbjct: 501 EGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNA 560

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C IHGN  + K AAE L E++PENP  YV +AN+YA+A
Sbjct: 561 CHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAA 598



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 189/444 (42%), Gaps = 68/444 (15%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +SL+  C   RA   G +VH+H  SSG +    +   L+  Y+     ++AQ++ +    
Sbjct: 47  ASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDI 106

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                +N +I+ + K         LF+E+      ++  M+S  +R              
Sbjct: 107 LHPLPWNVLIASYAK-------NELFEEVIA----AYKRMVSKGIR-------------- 141

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   + FT  SVL A      +  G+ +HG I  + + S   V +AL  MY +  +
Sbjct: 142 -------PDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRN 194

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV--- 266
           +  AR++FD+M +RD VSW A+I  Y  EG   E F LF ++  SG+  +  T+  +   
Sbjct: 195 MGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGG 254

Query: 267 --------------------------------LNACADHAAEELGKQVHGYMTRIGYDPY 294
                                           L AC+   A  LGK++HG      YD  
Sbjct: 255 CLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGI 314

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
               + L+ MYSKC ++ ++  VF       L +W S+I+GYAQ    ++A      +L 
Sbjct: 315 DNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLV 374

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           +G QP+ I    +L  C     +  G ++   I  +         +  +VD+ A+SG+  
Sbjct: 375 AGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIV 434

Query: 415 EAEDVISKMPMKPDKFLWASLLGG 438
            A+ V S +  K D+  + SL+ G
Sbjct: 435 AAKQV-SDLMSKRDEVTYTSLIDG 457



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 3/225 (1%)

Query: 154 NSVSNKFTL---SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           ++VS+   L   +S+LSA   ++    G ++H + + +G +   V+   L   Y      
Sbjct: 35  SAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLH 94

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           NEA+ I +       + W  +I  Y +    EE  A +  ++  GIRP+AFT+  VL AC
Sbjct: 95  NEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKAC 154

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
            +      G+ VHG +    Y    +  +AL+ MY +  N+  ++++F+ M   D VSW 
Sbjct: 155 GETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWN 214

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           ++I  YA  GM  +A E F+ +  SG +   I +  +   C   G
Sbjct: 215 AVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTG 259


>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
          Length = 564

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/434 (36%), Positives = 248/434 (57%), Gaps = 36/434 (8%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G ++H      GF   +F+++ L DMY+KCG + +A  +FD+M ++D  ++ TMI G+ K
Sbjct: 138 GTQLHCIGIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAK 197

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            GSLE A  +F +M             G V  +Q +                       S
Sbjct: 198 NGSLEAAILIFRDMK----------CEGLVGADQHV---------------------FCS 226

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR- 223
            LSA   ++    G+ +H  I++ GF+ + VV +AL DMY K G +  A ++    +D  
Sbjct: 227 ALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVS--IDPG 284

Query: 224 --DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
             +VVS T++I  Y + GR EE    ++EL + G+ PN FTFA ++  CA H   E G Q
Sbjct: 285 GWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQ 344

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H  + +      SF  S LV+MY  CG +  S ++FN +     ++W ++I  YAQ+G 
Sbjct: 345 LHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYRTEIAWNAVINVYAQHGH 404

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              A++ F+ +  SG +P+HI FV +LTAC+HAGLVD+GL YFHS+K+ HG+   A+HY+
Sbjct: 405 GWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEGLGYFHSMKDAHGIEPKAEHYS 464

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           CI+D+  R+GR  EAE  IS+MP+KP  + W SLLG CR+ GN +L + AA+ L +++P 
Sbjct: 465 CIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLGACRMQGNKELGEVAAQNLMKLDPN 524

Query: 462 NPATYVTMANIYAS 475
           N   +++++ IY S
Sbjct: 525 NTGIHISLSGIYTS 538



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 176/352 (50%), Gaps = 35/352 (9%)

Query: 34  QFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           Q C +   +  G+ +H+ L  +G      F++N L+ MY+ C   +DA +          
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAAASTFLANHLITMYSHC---ADAVS---------- 71

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                             A  +F  +P+ +  SWT ++SG V+ +   +AL  +  M+  
Sbjct: 72  ------------------AVRVFGVVPRPNLVSWTTLVSGLVQNSMHHDALAAFAAMRR- 112

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
            +    +F LSS   A +A+   R G ++H   +R GFD++  V S L+DMY KCG ++E
Sbjct: 113 AHIAPTQFALSSAARAAAALSAPRPGTQLHCIGIRLGFDNELFVASNLADMYSKCGLLHE 172

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACA 271
           A ++FD+M  +D V+WT MI  Y + G  E    +F ++   G +  +   F   L+A  
Sbjct: 173 ACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQHVFCSALSASG 232

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-DLVSWT 330
                  G+ +H  + + G++  +   +AL+ MY+K G++EN+ +V +  P   ++VS T
Sbjct: 233 GLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVSIDPGGWNVVSAT 292

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           SLI GY + G  ++ALE +  L + G +P+   F  ++  C    L+++G Q
Sbjct: 293 SLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQ 344



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 43/326 (13%)

Query: 175 LRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
           +R G+ +H  ++ TG  +    + + L  MY  C     A ++F  +   ++VSWT ++ 
Sbjct: 33  IRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRVFGVVPRPNLVSWTTLVS 92

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
              Q     +  A F+ + ++ I P  F  +    A A  +A   G Q+H    R+G+D 
Sbjct: 93  GLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLHCIGIRLGFDN 152

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F AS L  MYSKCG +  + +VF+ MP+ D V+WT++I GYA+NG  + A+  F  + 
Sbjct: 153 ELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMK 212

Query: 354 KSG-TQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSG 411
             G    D  VF   L+A    GL D    +  H    K G          ++D+ A+SG
Sbjct: 213 CEGLVGADQHVFCSALSA--SGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSG 270

Query: 412 RFHEAEDVISKMP-----------------------------------MKPDKFLWASLL 436
               A  V+S  P                                   ++P++F +AS++
Sbjct: 271 DLENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMI 330

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPEN 462
            GC +H   DL ++ A+   ++   N
Sbjct: 331 KGCAMH---DLLEQGAQLHAQVLKTN 353



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 40/264 (15%)

Query: 2   IDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID      R++EAL+   ++      P+   ++S+I+ C  +  LE+G ++H+ +  +  
Sbjct: 295 IDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNL 354

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               F+ + L+ MY  CG IS +  LF+E+  R   ++N +I+ + + G    A   FD 
Sbjct: 355 ISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDR 414

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
                      M S  +R                      N  T   +L+A S    +  
Sbjct: 415 -----------MTSSGIR---------------------PNHITFVCLLTACSHAGLVDE 442

Query: 178 G-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRY 235
           G    H      G +     +S + DMYG+ G ++EA +   +M V     +W +++G  
Sbjct: 443 GLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLGAC 502

Query: 236 FQEGRREEGFALFSELIKSGIRPN 259
             +G +E G      L+K  + PN
Sbjct: 503 RMQGNKELGEVAAQNLMK--LDPN 524


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 165/524 (31%), Positives = 265/524 (50%), Gaps = 72/524 (13%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC--------- 74
           P  +   +++  C +   ++ G ++H      G    V ++N L+DMY+KC         
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQML 191

Query: 75  ----------------------GNISDAQTLFDEMQ------------------------ 88
                                 G I +A  LF EMQ                        
Sbjct: 192 FDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQ 251

Query: 89  ----------------ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG 132
                           + D    N  ++ + K G L  A  +F  M  +   SW A+I G
Sbjct: 252 LRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGG 311

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
             +   P +AL+LY  M  +   V + FT+ S+L A + ++ LR GKE+HG+++R G + 
Sbjct: 312 CAQNGDPRKALNLYIQM-TYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEI 370

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D  +  +L  +Y  CG  + AR +FD M ++  VSW AMI  Y Q G  E+   LF +L+
Sbjct: 371 DSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLV 430

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
             G +P+      VL AC+  +A  LGK+ H Y  +       F A + + MY+K G ++
Sbjct: 431 SDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIK 490

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            S+ VF+G+   DL SW ++IA Y  +G  ++++E FE + K G  PD   F+G+LT C+
Sbjct: 491 ESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCS 550

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           HAGLV++GL+YF+ ++  HG+    +HYAC++D+L R+GR  +A  ++ +MP +PD  +W
Sbjct: 551 HAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVW 610

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +SLL  CR  G L++ +  AE L E+EP+N   YV+++N+YA +
Sbjct: 611 SSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGS 654



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 187/414 (45%), Gaps = 39/414 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +  +I+ C  +     G+ +H  +   G    VF+ N L+ MY K G +  A  +F  M 
Sbjct: 34  FPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMP 93

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            R++ S+N++ISGF++ G    +++ FD                            L  M
Sbjct: 94  VRNLVSWNSIISGFSENGF---SKDCFDM---------------------------LVEM 123

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M   E  + +  TL +VL   +    +++G  IHG  ++ G   D  V ++L DMY KCG
Sbjct: 124 MAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCG 183

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVL 267
            + EA+ +FDK   ++ VSW  MIG    +G   E F LF E+ ++  I  N  T   +L
Sbjct: 184 YLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNIL 243

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC + +     K++HGY  R G+      A+  V  Y+KCG +  +++VF  M    + 
Sbjct: 244 PACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVN 303

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY---F 384
           SW +LI G AQNG P KAL  +  +  SG  PD      +L A  H     K L+Y    
Sbjct: 304 SWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL----KSLRYGKEV 359

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           H    +HGL   +     ++ L    G    A  +   M  K     W +++ G
Sbjct: 360 HGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKS-SVSWNAMISG 412



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 155/329 (47%), Gaps = 38/329 (11%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL +  Q+++    P      SL+      ++L  GK+VH  +   G +   FI   L
Sbjct: 319 RKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISL 378

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L +Y  CG  S A+ LFD M+E+   S+N MISG+++ G  E A  LF ++   D F   
Sbjct: 379 LSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS-DGF--- 434

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                     QP                  +   + SVL A S    LRLGKE H Y ++
Sbjct: 435 ----------QP------------------SDIAVVSVLGACSQQSALRLGKETHCYALK 466

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
                D  V  +  DMY K G I E+R +FD + ++D+ SW A+I  Y   G  EE   L
Sbjct: 467 ALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIEL 526

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYS 306
           F  + K G  P+ FTF G+L  C+     E G +    M    G +P     + ++ M  
Sbjct: 527 FERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLG 586

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
           + G ++++ ++ + MP +PD   W+SL++
Sbjct: 587 RAGRLDDALRLVHEMPEQPDSRVWSSLLS 615



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 141 EALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           +A+D++ +++ + E +  N FT   V+ A +      LG+ IHG +++ G   D  V +A
Sbjct: 13  DAIDMFVKLITDTEFNADN-FTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNA 71

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI--KSGIR 257
           L  MYGK G ++ A ++F  M  R++VSW ++I  + + G  ++ F +  E++  + G+ 
Sbjct: 72  LIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL 131

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+  T   VL  CA     ++G ++HG   ++G        ++LV MYSKCG +  ++ +
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQML 191

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGL 376
           F+   R + VSW ++I G    G   +A   F E+ ++   + + +  + +L AC     
Sbjct: 192 FDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQ 251

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           + + L+  H    +HG  Y        V   A+ G    AE V   M  K     W +L+
Sbjct: 252 L-RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNS-WNALI 309

Query: 437 GGCRIHGN 444
           GGC  +G+
Sbjct: 310 GGCAQNGD 317



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 142/329 (43%), Gaps = 61/329 (18%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            PS     S++  C Q  AL  GK+ H +   +     VF++   +DMYAK G I ++++
Sbjct: 435 QPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRS 494

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQ 138
           +FD ++ +D+ S+N +I+ +   G  E++  LF+ M +     D F++  +++       
Sbjct: 495 VFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGL 554

Query: 139 PIEALDLYRMMQNF---ENSVSNKFTLSSVLSAVSAI-QCLRLGKEIHGYIMRTGFDSDE 194
             E L  +  MQNF   E  + +   +  +L     +   LRL  E+           D 
Sbjct: 555 VEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPE-------QPDS 607

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            VWS+L       G +   + + +K+++   ++V ++ ++   Y   GR ++   +   +
Sbjct: 608 RVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMI 667

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY-----------------------MTR 288
              G++ +A         C   +  ELG +VH +                       M +
Sbjct: 668 KDIGLQKDA--------GC---SWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCK 716

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKV 317
           IGY P +   SA++H      +V+  KK+
Sbjct: 717 IGYKPNT---SAVLH------DVDEEKKI 736


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 253/469 (53%), Gaps = 36/469 (7%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           ++E LQ+L ++      P    + SL+        L  GK VH H+  +G +    I   
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETS 287

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MY KCGN++                                A  +F+ M  +D  SW
Sbjct: 288 LIGMYLKCGNVN-------------------------------SAFRIFEGMMHKDVISW 316

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMISG V+ +    A+ ++R M      + +  T++SVL+A + +    LG  +HGYI+
Sbjct: 317 TAMISGLVQNDCADMAVTVFRRMLK-SRVMPSTATIASVLAACAELGSFPLGTSVHGYIL 375

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R     D    ++L  MY KCG + ++  +FD+M  RD+VSW A++  + Q G   +   
Sbjct: 376 RQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALL 435

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF+E+ K+  RP++ T   +L ACA   A   GK +H ++T+    P     +ALV MYS
Sbjct: 436 LFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYS 495

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++ +++K F+ MP+ DLVSW+S+IAGY  +G  + AL  +   L +G QP+H++++ 
Sbjct: 496 KCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLS 555

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L+AC+H GLVD+GL +FHS+ +  G+    +H ACIVDLL+R+GR  EA     +M  K
Sbjct: 556 ILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPK 615

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           P   +   LL  CR  GN++L    A  +  ++P N   YV +A+ YAS
Sbjct: 616 PSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYAS 664



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 201/422 (47%), Gaps = 37/422 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL++ C        G   H  +   G+    +I+  L++ Y+K G+   A+ +
Sbjct: 46  PDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKV 105

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M +R+V  + TMI  +T+ G  + A ++++ M ++                QP    
Sbjct: 106 FDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQG--------------IQP---- 147

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                     +SV+    LS VL  V  +QCL      H  +++ GF SD  + +++ ++
Sbjct: 148 ----------SSVTMLGLLSGVLELVH-LQCL------HACVIQYGFGSDVALANSMLNV 190

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + +A+ +F+ M  RDV+SW +++  Y Q G   E   L   +   GI P+  TF
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +++A A  +   +GK VHG++ R G +  S   ++L+ MY KCGNV ++ ++F GM  
Sbjct: 251 GSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMH 310

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D++SWT++I+G  QN   D A+  F  +LKS   P       VL AC   G    G   
Sbjct: 311 KDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTS- 369

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    +  +         +V + A+ G   ++  V  +M  + D   W +++ G   +G
Sbjct: 370 VHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRR-DIVSWNAIVSGHAQNG 428

Query: 444 NL 445
           +L
Sbjct: 429 HL 430



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           S+ A+I R    G   +    +S ++ +   P+A TF  ++ AC        G   H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
              GY   S+ A++L++ YSK G+ ++++KVF+ M   ++V WT++I  Y + G  D A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             + ++ + G QP  +  +G+L+      LV   LQ  H+   ++G          ++++
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLE--LVH--LQCLHACVIQYGFGSDVALANSMLNV 190

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
             + GR  +A+ +   M  + D   W SL+ G    GN+
Sbjct: 191 YCKCGRVEDAQALFELMDAR-DVISWNSLVSGYAQLGNI 228


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/407 (37%), Positives = 241/407 (59%), Gaps = 1/407 (0%)

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY K G I +A   F+ M  R++ S+N +I+G  + G L+ A  +FDEM +R+  +W AM
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           +SG +++      L L+R M      + ++FTL SVL   + ++    GK++H Y+++ G
Sbjct: 61  VSGLIQFEFNENGLFLFREMHEL-GFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYG 119

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           ++ + VV S+L+ MY K GS+ E  ++   M  R+VV+W  +I    Q G  E    L++
Sbjct: 120 YEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYN 179

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            +  SG+RP+  T   V+++ A+ A    G+Q+H    + G +      S+L+ MYSKCG
Sbjct: 180 MMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCG 239

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            +E+S K       PD V W+S+IA Y  +G  ++A+  FE + + G   + + F+ +L 
Sbjct: 240 CLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLY 299

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC+H GL +KG+ +F  + EK+GL    +HY C+VDLL RSG   EAE +I  MP++ D 
Sbjct: 300 ACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADV 359

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +W +LL  CRIH N D+A R AE +  + P++ ATYV ++NI+ASA
Sbjct: 360 VIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASA 406



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 154/337 (45%), Gaps = 34/337 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P      S+++ C   RA   GK+VH+++   G++  + + + L  MY K G++ + + +
Sbjct: 87  PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKV 146

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
              M+ R+V ++NT+I+G  + G  E                                 L
Sbjct: 147 IKAMRIRNVVAWNTLIAGNAQNGHFEG-------------------------------VL 175

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DLY MM+       +K TL SV+S+ + +  L  G++IH   ++ G +S   V S+L  M
Sbjct: 176 DLYNMMK-MSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISM 234

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + ++ +        D V W++MI  Y   GR EE   LF ++ + G+  N  TF
Sbjct: 235 YSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTF 294

Query: 264 AGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L AC+ +  +E G      M  + G  P     + +V +  + G ++ ++ +   MP
Sbjct: 295 LSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMP 354

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
              D+V W +L++    +   D A    E +L+   Q
Sbjct: 355 LEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQ 391


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 248/443 (55%), Gaps = 32/443 (7%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           ++ C   R ++ GK++H+H+   GF   V+++N L  MY +CG + D            +
Sbjct: 210 LKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDG-----------L 258

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
           C                    LF+ M +RD  SWT++I  Y R     +A++ +  M+N 
Sbjct: 259 C--------------------LFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNS 298

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           +    N+ T +++ SA +++  L  G+++H  +   G +    V +++  MY  CG ++ 
Sbjct: 299 QVP-PNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDS 357

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A  +F  M  RD++SW+ +IG Y Q G  EE F  FS + +SG +P  F  A +L+   +
Sbjct: 358 ASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGN 417

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
            A  E G+QVH      G +  S   S L++MYSKCGN++ + K+F    R D+VS T++
Sbjct: 418 MAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAM 477

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I GYA++G   +A++ FE  LK G  PD + F+ VLTACTH+G +D G  YF+ ++EK+ 
Sbjct: 478 INGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACTHSGQLDLGFHYFNLMQEKYN 537

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +    +HY C+VDLL R+GR  EAE +I +M  K D  +W +LL  C+  G+++  +RAA
Sbjct: 538 MRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDDVVWTTLLIACKAKGDIERGRRAA 597

Query: 453 EALFEIEPENPATYVTMANIYAS 475
           E + E++P      VT+ANIY+S
Sbjct: 598 ERILELDPTCATALVTLANIYSS 620



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 229/471 (48%), Gaps = 67/471 (14%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A++++     P  S+ S +++ C Q+  +  G+ +H++   +     VF+ + LLDM
Sbjct: 87  LFSAMRVVDPAVSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDM 146

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y + G I                               E++  +F EMP R+  +WTA+I
Sbjct: 147 YKRVGKI-------------------------------EKSCRVFSEMPFRNAVTWTAII 175

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +G V   +  E L  Y    +    +S+ FT +  L A + ++ ++ GK+IH +++  GF
Sbjct: 176 TGLVHAGRYKEGLT-YFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGF 234

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
           D+   V ++L+ MY +CG + +   +F+ M +RDVVSWT++I  Y + G  E+    F +
Sbjct: 235 DATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIK 294

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           +  S + PN  TFA + +ACA  +    G+Q+H  +  +G +     +++++ MYS CG 
Sbjct: 295 MRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGK 354

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           ++++  +F GM   D++SW+++I GY+Q G  ++A +YF  + +SG +P       +L+ 
Sbjct: 355 LDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSV 414

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA---------EDVIS 421
             +  +++ G Q  H++    GL   +   + ++++ ++ G   EA         +D++S
Sbjct: 415 SGNMAVLEGGRQ-VHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVS 473

Query: 422 -------------------------KMPMKPDKFLWASLLGGCRIHGNLDL 447
                                    K+   PD   + S+L  C   G LDL
Sbjct: 474 LTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACTHSGQLDL 524



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 177/344 (51%), Gaps = 3/344 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N+ +      G+L  AR +FD+MP RD  SWTA+I GYV  N   EA+ L+  M+  + +
Sbjct: 38  NSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPA 97

Query: 156 VS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           VS +   +S VL A      +  G+ +H Y ++T   S   V S+L DMY + G I ++ 
Sbjct: 98  VSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSC 157

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++F +M  R+ V+WTA+I      GR +EG   FSE+  S    + FTFA  L ACA   
Sbjct: 158 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLR 217

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             + GKQ+H ++   G+D   + A++L  MY++CG + +   +F  M   D+VSWTSLI 
Sbjct: 218 QVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIV 277

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            Y + G  +KA+E F  +  S   P+   F  + +AC     +  G Q  H      GL 
Sbjct: 278 AYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQ-LHCNVFSLGLN 336

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +      ++ + +  G+   A  +   M  + D   W++++GG
Sbjct: 337 DSLSVSNSMMKMYSTCGKLDSASVLFQGMRCR-DIISWSTIIGG 379


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 262/457 (57%), Gaps = 29/457 (6%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+ S +   I+ C     +  GK+ H      G++  +F+S+ L+ MY+ CG + DA+ 
Sbjct: 73  YPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK 132

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FDE+ +R++ S+ +MI G+   G+   A +LF ++   +N    AM             
Sbjct: 133 VFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM------------- 179

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                    F +S+     L SV+SA S +    L + IH ++++ GFD    V + L D
Sbjct: 180 ---------FLDSMG----LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLD 226

Query: 203 MYGKCGS--INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP-N 259
            Y K G   +  AR+IFD++VD+D VS+ +++  Y Q G   E F +F  L+K+ +   N
Sbjct: 227 AYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFN 286

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           A T + VL A +   A  +GK +H  + R+G +      ++++ MY KCG VE ++K F+
Sbjct: 287 AITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   ++ SWT++IAGY  +G   KALE F  ++ SG +P++I FV VL AC+HAGL  +
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVE 406

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G ++F+++K + G+    +HY C+VDLL R+G   +A D+I +M MKPD  +W+SLL  C
Sbjct: 407 GWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAAC 466

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           RIH N++LA+ +   LFE++  N   Y+ +++IYA A
Sbjct: 467 RIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADA 503



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 185/375 (49%), Gaps = 19/375 (5%)

Query: 113 NLFDE-MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
            LF+  + + D FSW ++I+   R     EAL  +  M+   +    + +    + A S+
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL-SLYPTRSSFPCAIKACSS 88

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           +  +  GK+ H      G+ SD  V SAL  MY  CG + +AR++FD++  R++VSWT+M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148

Query: 232 IGRYFQEGRREEGFALFSELI------KSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           I  Y   G   +  +LF +L+         +  ++     V++AC+   A+ L + +H +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 286 MTRIGYDPYSFAASALVHMYSKCGN--VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           + + G+D      + L+  Y+K G   V  ++K+F+ +   D VS+ S+++ YAQ+GM +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 344 KALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           +A E F  L+K+     + I    VL A +H+G +  G +  H    + GL         
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTS 327

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEP 460
           I+D+  + GR   A     +M  K  +  W +++ G  +HG+   A +A E LF   I+ 
Sbjct: 328 IIDMYCKCGRVETARKAFDRMKNKNVRS-WTAMIAGYGMHGH---AAKALE-LFPAMIDS 382

Query: 461 ENPATYVTMANIYAS 475
                Y+T  ++ A+
Sbjct: 383 GVRPNYITFVSVLAA 397


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 256/460 (55%), Gaps = 24/460 (5%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C    AL  G++VHS    +GF    +I +CL++MY++CG++  A+ +FD M   DV  Y
Sbjct: 124 CADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGY 183

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMIS-----------GYV------ 134
            ++IS F + G  E A     +M ++    +  + T +++           GY+      
Sbjct: 184 TSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGL 243

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           R      +  L       E    N+F LS VL A  +I    LG+++H   ++    +D 
Sbjct: 244 RSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDI 300

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL  MYG+ G + E   + +K+ + D+VSWT  I   FQ G  E+  AL  ++   
Sbjct: 301 RVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSE 360

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G  PN + F+ VL++CAD A+ + G Q H    ++G D      +AL++MYSKCG + ++
Sbjct: 361 GFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSA 420

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +  F+ M   D+ SW SLI G+AQ+G  +KALE F  +  +G +PD   F+GVL  C H+
Sbjct: 421 RLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHS 480

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G+V++G  +F  + +++  T    HYAC++D+L R+GRF EA  +I+ MP +PD  +W +
Sbjct: 481 GMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKT 540

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           LL  C++H NLD+ K AA+ L E+   + A+YV M+NIYA
Sbjct: 541 LLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYA 580



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 186/402 (46%), Gaps = 63/402 (15%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKF 160
             K G L  A +LFD MP+++  +WT+++SG  R  +P  AL ++  M   E+ V+ N F
Sbjct: 58  LVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADM--VESGVAPNDF 115

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
             ++ L A + +  LR G+++H   +R GF  D  + S L +MY +CGS+  A+++FD+M
Sbjct: 116 ACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM 175

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
              DVV +T++I  + + G  E       +++K G++PN  T   +L AC       LG+
Sbjct: 176 DSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQ 231

Query: 281 QVHGYMTRI----------------------GYDPYSFAAS------------------- 299
           Q+HGY+ +                       G DP  FA S                   
Sbjct: 232 QIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQLHCSA 291

Query: 300 -------------ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
                        AL+ MY + G VE  + + N +  PDLVSWT+ I+   QNG  +KA+
Sbjct: 292 IKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAI 351

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
                +   G  P+   F  VL++C     +D+G+Q FH +  K G          ++++
Sbjct: 352 ALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINM 410

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            ++ G+   A      M    D   W SL+ G   HG+ + A
Sbjct: 411 YSKCGQMGSARLAFDVMHTH-DVTSWNSLIHGHAQHGDANKA 451



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 133/246 (54%), Gaps = 20/246 (8%)

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           K G + +A  +FD+M  ++VV+WT+++    + GR E   A+F+++++SG+ PN F    
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
            L ACAD  A   G+QVH    R G+   ++  S L+ MYS+CG++  +K+VF+ M  PD
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +V +TSLI+ + +NG  + A E    +LK G +P+      +LTAC        G Q   
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHG 235

Query: 386 SIKEKHGL-TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            + +K GL + +      ++D  +R    +E  D        P++F  + +LG C   G+
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSR----NEGVD--------PNEFALSIVLGAC---GS 280

Query: 445 LDLAKR 450
           + L ++
Sbjct: 281 IGLGRQ 286



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 119/281 (42%), Gaps = 25/281 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +SS++  C    +L++G + H      G    +   N L++MY+KCG +  A+  
Sbjct: 364 PNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLA 423

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQP 139
           FD M   DV S+N++I G  + G   +A  +F +M     + D+ ++  ++ G       
Sbjct: 424 FDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMV 483

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--EIHGYIMRTGFDSDEVVW 197
            E    +R+M +        FT +    A       R G+  E    I    F+ D ++W
Sbjct: 484 EEGELFFRLMID-----QYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIW 538

Query: 198 SALSDMYGKCGSINEARQIFDKMV---DRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
             L        +++  +   D+++   DRD  S+  M   Y   G  E+   +   + ++
Sbjct: 539 KTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDET 598

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
           G++ +A         C   +  E+  +VH + +R    P S
Sbjct: 599 GVKKDA--------GC---SWIEINNEVHTFASRDMSHPNS 628


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 255/456 (55%), Gaps = 37/456 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +SSL+    +   LE  +++H ++        +F+++ L+D Y KC  +S AQ +
Sbjct: 334 PDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKI 393

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +    DV  +                               TAMISGY+     I+AL
Sbjct: 394 FSQCNSVDVVVF-------------------------------TAMISGYLHNGLNIDAL 422

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +++R +   + S  N+ TL S+L  +  +  L+LG+E+HG+I++ GFD+   +  A+ DM
Sbjct: 423 EMFRWLVKVKIS-PNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDM 481

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +N A +IF ++  RD+VSW +MI R  Q         +F ++  SGI  +  + 
Sbjct: 482 YAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSI 541

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           +  L+ACA+  +E  GK +HG+M +  +  D YS   S L+ MY+KCGN++ +  VF+ M
Sbjct: 542 SAALSACANLPSESFGKAIHGFMIKHSLALDVYS--ESTLIDMYAKCGNLKAAMNVFDTM 599

Query: 322 PRPDLVSWTSLIAGYAQNG-MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
              ++VSW S+IA Y  +G + D    + E++ KSG +PD I F+ +++ C H G VD+G
Sbjct: 600 KEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEG 659

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           +++F S+ + +G+    +HYAC+VDL  R+GR  EA + +  MP  PD  +W +LLG  R
Sbjct: 660 VRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASR 719

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +H N++LAK A+  L +++P N   YV ++N +A+ 
Sbjct: 720 LHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANT 755



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 19/425 (4%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P  SI SS ++    N+AL      +  +   G  P V    CL+       N    + 
Sbjct: 100 RPWNSIISSFVRMGLLNQALA----FYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEF 155

Query: 83  LFDEMQERDV-CS---YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR--- 135
           L D +    + C+    +++I  + + G ++ A  LFD + Q+D   W  M++GY +   
Sbjct: 156 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGA 215

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            +  I+   L RM Q   N+V    T   VLS  ++   + LG ++HG ++ +G D +  
Sbjct: 216 SDSVIKGFSLMRMDQISPNAV----TFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGS 271

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + ++L  MY KCG  ++A ++F  M   D V+W  MI  Y Q G  EE    F E+I SG
Sbjct: 272 IKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSG 331

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           + P+A TF+ +L + +     E  +Q+H Y+ R       F  SAL+  Y KC  V  ++
Sbjct: 332 VLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQ 391

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           K+F+     D+V +T++I+GY  NG+   ALE F  L+K    P+ I  V +L      G
Sbjct: 392 KIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVI--GG 449

Query: 376 LVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           L+   L +  H    K G     +    ++D+ A+ GR + A ++  ++  K D   W S
Sbjct: 450 LLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLS-KRDIVSWNS 508

Query: 435 LLGGC 439
           ++  C
Sbjct: 509 MITRC 513



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 151/316 (47%), Gaps = 9/316 (2%)

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           S +++   +V Y + +   + YR +   E ++  + +L  +L   S +  LR GK++H +
Sbjct: 2   SISSVAKRFVPYKKSLPLRNSYRFL---EETLPRRLSL--LLQDCSNLTLLRQGKQVHAF 56

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR--DVVSWTAMIGRYFQEGRRE 242
           ++      D      +  MY  CGS +   ++F ++  R   +  W ++I  + + G   
Sbjct: 57  VIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLN 116

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +  A + +++  G+ P+  TF  ++ AC      +  + +   ++ +G D   F AS+L+
Sbjct: 117 QALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLI 176

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
             Y + G ++ + K+F+ + + D V W  ++ GYA+ G  D  ++ F L+      P+ +
Sbjct: 177 KAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAV 236

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F  VL+ C    L+D G+Q  H +    GL +       ++ + ++ GRF +A  +  +
Sbjct: 237 TFDCVLSVCASKLLIDLGVQ-LHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLF-R 294

Query: 423 MPMKPDKFLWASLLGG 438
           M  + D   W  ++ G
Sbjct: 295 MMSRADTVTWNCMISG 310


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 262/470 (55%), Gaps = 11/470 (2%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           + +IL Q   P+  +++++I+    N   +E  +++  ++  G  P  F    +L     
Sbjct: 61  SFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLK---A 117

Query: 74  CGNISDAQT-------LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           C  + D++        +     E D     ++I+ +TK G ++ A  +FD++P ++  SW
Sbjct: 118 CARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASW 177

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TA ISGYV   +  EA+D++R +        + F+L  VLSA      LR G+ I  YI 
Sbjct: 178 TATISGYVGVGKCREAIDMFRRLLEM-GLRPDSFSLVEVLSACKRTGDLRSGEWIDEYIT 236

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G   +  V +AL D YGKCG++  AR +FD M+++++VSW++MI  Y   G  +E   
Sbjct: 237 ENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALD 296

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF +++  G++P+ +   GVL +CA   A ELG      +    +   S   +AL+ MY+
Sbjct: 297 LFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYA 356

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG ++ + +VF GM + D V W + I+G A +G    AL  F  + KSG +PD   FVG
Sbjct: 357 KCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVG 416

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L ACTHAGLV++G +YF+S++    LT   +HY C+VDLL R+G   EA  +I  MPM+
Sbjct: 417 LLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPME 476

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +  +W +LLGGCR+H +  L +   + L  +EP +   YV ++NIYA++
Sbjct: 477 ANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAAS 526



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 207/425 (48%), Gaps = 37/425 (8%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           I   S  I + LIQ       L+  K +H+ L   G     ++ N +L      GN + +
Sbjct: 5   IVTKSAGIKNRLIQ---GFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYS 61

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
             + D+ +E ++  +NTMI G       +                               
Sbjct: 62  FRILDQTKEPNIFLFNTMIRGLVLNDCFQ------------------------------- 90

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           E++++Y  M+  E    + FT   VL A + +    LG ++H  +++ G ++D  V  +L
Sbjct: 91  ESIEIYHSMRK-EGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISL 149

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            ++Y KCG I+ A ++FD + D++  SWTA I  Y   G+  E   +F  L++ G+RP++
Sbjct: 150 INLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDS 209

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           F+   VL+AC        G+ +  Y+T  G     F A+ALV  Y KCGN+E ++ VF+G
Sbjct: 210 FSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDG 269

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M   ++VSW+S+I GYA NG+P +AL+ F  +L  G +PD    VGVL +C   G ++ G
Sbjct: 270 MLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG 329

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
               + I     L  +    A ++D+ A+ GR   A +V   M  K D+ +W + + G  
Sbjct: 330 DWASNLINGNEFLDNSVLGTA-LIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISGLA 387

Query: 441 IHGNL 445
           + G++
Sbjct: 388 MSGHV 392



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 151/310 (48%), Gaps = 7/310 (2%)

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
           +    CL+  K IH  ++R G D D  + + +       G+ N + +I D+  + ++  +
Sbjct: 17  IQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLF 76

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
             MI         +E   ++  + K G+ P++FTF  VL ACA     ELG ++H  + +
Sbjct: 77  NTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVK 136

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G +  +F   +L+++Y+KCG ++N+ KVF+ +P  +  SWT+ I+GY   G   +A++ 
Sbjct: 137 AGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDM 196

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  LL+ G +PD    V VL+AC   G +  G ++      ++G+         +VD   
Sbjct: 197 FRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG-EWIDEYITENGMVRNVFVATALVDFYG 255

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI--EPENPATY 466
           + G    A  V   M ++ +   W+S++ G   +G   L K A +  F++  E   P  Y
Sbjct: 256 KCGNMERARSVFDGM-LEKNIVSWSSMIQGYASNG---LPKEALDLFFKMLNEGLKPDCY 311

Query: 467 VTMANIYASA 476
             +  + + A
Sbjct: 312 AMVGVLCSCA 321


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 253/446 (56%), Gaps = 33/446 (7%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C Q+R    G+ VH +   +G      ++N LLDMY+ C   SD Q+        
Sbjct: 523 SVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNC---SDWQS-------- 571

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                                  +F  M Q++  SWTAMI+ Y+R     +   L + M 
Sbjct: 572 --------------------TNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMV 611

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             +    + F ++S L A +  + L+ GK +HGY +R G +    V +AL +MY KC ++
Sbjct: 612 -LDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNV 670

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EAR IFD++ ++DV+SW  +IG Y +     E F+LFS+++    RPNA T   +L A 
Sbjct: 671 EEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAA 729

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  ++ E G+++H Y  R G+   S+A++ALV MY KCG +  ++ +F+ + + +L+SWT
Sbjct: 730 ASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWT 789

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +IAGY  +G    A+  FE +  SG +PD   F  +L AC H+GL  +G ++F +++++
Sbjct: 790 IMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKE 849

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           + +     HY CIVDLL+R+G   EA + I  MP++PD  +W SLL GCRIH N+ LA++
Sbjct: 850 YKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEK 909

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            A+ +F++EPEN   YV +ANIYA A
Sbjct: 910 VADKVFKLEPENTGYYVLLANIYAEA 935



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 218/464 (46%), Gaps = 55/464 (11%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
            +E+L +  Q+      P     S L++         +G   H ++   GF     + N 
Sbjct: 398 FEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNA 457

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+  YAK   I DA  +F+ M  +D  S+N++ISG +  G   +A  LF  M       W
Sbjct: 458 LISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRM-------W 510

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T          Q ++++                 TL SVL A +  +    G+ +HGY +
Sbjct: 511 TQ--------GQELDSV-----------------TLLSVLPACAQSRYWFAGRVVHGYSV 545

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +TG   +  + +AL DMY  C       QIF  M  ++VVSWTAMI  Y + G  ++   
Sbjct: 546 KTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAG 605

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           L  E++  GIRP+ F     L+A A   + + GK VHGY  R G +     A+AL+ MY 
Sbjct: 606 LLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYV 665

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFV 365
           KC NVE ++ +F+ +   D++SW +LI GY++N  P+++   F ++LL+   +P+ +   
Sbjct: 666 KCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ--FRPNAVTMT 723

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKM 423
            +L A      +++G +  H+   + G  +  D YA   +VD+  + G    A  +  ++
Sbjct: 724 CILPAAASISSLERGRE-IHAYALRRG--FLEDSYASNALVDMYVKCGALLVARVLFDRL 780

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IEPE 461
             K +   W  ++ G  +HG      + A ALFE      IEP+
Sbjct: 781 T-KKNLISWTIMIAGYGMHG----FGKHAIALFEQMRGSGIEPD 819



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 202/424 (47%), Gaps = 18/424 (4%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT---LF 84
           +++SL+    +    +E   +   ++  G  P     +C+L   +  G++++ +    L 
Sbjct: 171 VWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLL 230

Query: 85  DEMQERDVCSY-NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           +++     C+  N +I+ +++ G +E A  +FD M  RD  SW +MI G         A+
Sbjct: 231 EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAV 290

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----GFDS------D 193
           DL+  M +    +S+  T+ SVL A + +    +GK +HGY +++    G DS      D
Sbjct: 291 DLFSKMWSQGTEISS-VTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDD 349

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELI 252
             + S L  MY KCG +  AR++FD M  + +V  W  ++G Y + G  EE  +LF ++ 
Sbjct: 350 AALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMH 409

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           + GI P+    + +L      +    G   HGY+ ++G+       +AL+  Y+K   + 
Sbjct: 410 ELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIG 469

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
           ++  VFN MPR D +SW S+I+G + NG+  +A+E F  +   G + D +  + VL AC 
Sbjct: 470 DAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACA 529

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
            +     G +  H    K GL         ++D+ +    +     +   M  K +   W
Sbjct: 530 QSRYWFAG-RVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQK-NVVSW 587

Query: 433 ASLL 436
            +++
Sbjct: 588 TAMI 591



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 211/467 (45%), Gaps = 67/467 (14%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-- 59
           I  LC    L  AL++L          Y  ++Q C + R+LE  K+ H+ +++S      
Sbjct: 73  IQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATG 132

Query: 60  --GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
             G  +   L+  Y KCG+                               L +AR +FD 
Sbjct: 133 GKGSVLGKRLVLAYLKCGD-------------------------------LGEARTVFDG 161

Query: 118 MPQR--DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
           MP +  D   WT+++S Y +     EA+ L+R MQ    S  +   +S VL  VS++  L
Sbjct: 162 MPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS-PDAHAVSCVLKCVSSLGSL 220

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
             G+ IHG + + G      V +AL  +Y +CG + +A ++FD M  RD +SW +MIG  
Sbjct: 221 TEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGC 280

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY---- 291
           F  G       LFS++   G   ++ T   VL ACA      +GK VHGY  + G     
Sbjct: 281 FSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGL 340

Query: 292 -------DPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPD 343
                  D  +   S LV MY KCG++ ++++VF+ M  + ++  W  ++ GYA+ G  +
Sbjct: 341 DSVQSGIDDAAL-GSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFE 399

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLT-----ACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           ++L  F  + + G  PD      +L      +C   GLV  G    + +K    L + A 
Sbjct: 400 ESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG----YIVK----LGFGAQ 451

Query: 399 HYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
              C  ++   A+S    +A  V ++MP + D   W S++ GC  +G
Sbjct: 452 CAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSNG 497



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 164/341 (48%), Gaps = 10/341 (2%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFS-WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           + K G +  AR +FD M  + N   W  ++ GY +  +  E+L L+  M        ++ 
Sbjct: 360 YVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHEL-GIAPDEH 418

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
            +S +L  ++ + C R G   HGYI++ GF +   V +AL   Y K   I +A  +F++M
Sbjct: 419 AISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRM 478

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             +D +SW ++I      G   E   LF  +   G   ++ T   VL ACA       G+
Sbjct: 479 PRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGR 538

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
            VHGY  + G    +  A+AL+ MYS C + +++ ++F  M + ++VSWT++I  Y + G
Sbjct: 539 VVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAG 598

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY---FHSIKEKHGLTYTA 397
           + DK     + ++  G +PD    V  +T+  HA   D+ L+     H    ++G+    
Sbjct: 599 LFDKVAGLLQEMVLDGIRPD----VFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLL 654

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                ++++  +     EA  +  ++  K D   W +L+GG
Sbjct: 655 PVANALMEMYVKCRNVEEARLIFDRVTNK-DVISWNTLIGG 694



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 16/229 (6%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           +LE G+++H++    GF    + SN L+DMY KCG +  A+ LFD + ++++ S+  MI+
Sbjct: 734 SLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIA 793

Query: 101 GFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYRMMQ---NFE 153
           G+   G  + A  LF++M     + D  S++A++          E    ++ MQ     E
Sbjct: 794 GYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIE 853

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
             + +   +  +LS    +      KE   +I     + D  +W +L        ++  A
Sbjct: 854 PKLKHYTCIVDLLSRTGDL------KEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLA 907

Query: 214 RQIFDKM--VDRDVVSWTAMIGRYFQEGRREEGF-ALFSELIKSGIRPN 259
            ++ DK+  ++ +   +  ++   + E  R E    L +++   G+R N
Sbjct: 908 EKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLREN 956


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 253/469 (53%), Gaps = 36/469 (7%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           ++E LQ+L ++      P    + SL+        L  GK VH H+  +G +    I   
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETS 287

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MY KCGN++ A                                 +F+ M  +D  SW
Sbjct: 288 LIGMYLKCGNVNSA-------------------------------FRIFEGMMHKDVISW 316

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMISG V+ +    A+ ++R M      + +  T++SVL+A + +    LG  +HGYI+
Sbjct: 317 TAMISGLVQNDCADMAVTVFRRMLK-SRVMPSTATIASVLAACAELGSFPLGTSVHGYIL 375

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R     D    ++L  MY KCG + ++  +FD+M  RD+VSW A++  + Q G   +   
Sbjct: 376 RQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALL 435

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF+E+ K+  RP++ T   +L ACA   A   GK +H ++T+    P     +ALV MYS
Sbjct: 436 LFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYS 495

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++ +++K F+ MP+ DLVSW+S+IAGY  +G  + AL  +   L +G QP+H++++ 
Sbjct: 496 KCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLS 555

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L+AC+H GLVD+GL +FHS+ +  G+    +H ACIVDLL+R+GR  EA     +M  K
Sbjct: 556 ILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPK 615

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           P   +   LL  CR  GN++L    A  +  ++P N   YV +A+ YAS
Sbjct: 616 PSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYAS 664



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 201/422 (47%), Gaps = 37/422 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL++ C        G   H  +   G+    +I+  L++ Y+K G+   A+ +
Sbjct: 46  PDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKV 105

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M +R+V  + TMI  +T+ G  + A ++++ M +R                QP    
Sbjct: 106 FDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIM-RRQGI-------------QP---- 147

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                     +SV+    LS VL  V  +QCL      H  +++ GF SD  + +++ ++
Sbjct: 148 ----------SSVTMLGLLSGVLELVH-LQCL------HACVIQYGFGSDVALANSMLNV 190

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + +A+ +F+ M  RDV+SW +++  Y Q G   E   L   +   GI P+  TF
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +++A A  +   +GK VHG++ R G +  S   ++L+ MY KCGNV ++ ++F GM  
Sbjct: 251 GSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMH 310

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D++SWT++I+G  QN   D A+  F  +LKS   P       VL AC   G    G   
Sbjct: 311 KDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTS- 369

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    +  +         +V + A+ G   ++  V  +M  + D   W +++ G   +G
Sbjct: 370 VHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRR-DIVSWNAIVSGHAQNG 428

Query: 444 NL 445
           +L
Sbjct: 429 HL 430



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 145/288 (50%), Gaps = 5/288 (1%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T  S++ A +++     G   H  ++  G+ SD  + ++L + Y K G    AR++FD M
Sbjct: 50  TFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTM 109

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            DR+VV WT MIG Y + G  +  F++++ + + GI+P++ T  G+L+   +    +   
Sbjct: 110 DDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC-- 167

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
            +H  + + G+      A++++++Y KCG VE+++ +F  M   D++SW SL++GYAQ G
Sbjct: 168 -LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLG 226

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              + L+    +   G +PD   F  +++A      +  G +  H    + GL   +   
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVG-KMVHGHILRAGLEQDSHIE 285

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             ++ +  + G  + A  +   M M  D   W +++ G   +   D+A
Sbjct: 286 TSLIGMYLKCGNVNSAFRIFEGM-MHKDVISWTAMISGLVQNDCADMA 332



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           S+ A+I R    G   +    +S ++ +   P+A TF  ++ AC        G   H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
              GY   S+ A++L++ YSK G+ ++++KVF+ M   ++V WT++I  Y + G  D A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             + ++ + G QP  +  +G+L+      LV   LQ  H+   ++G          ++++
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLE--LVH--LQCLHACVIQYGFGSDVALANSMLNV 190

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
             + GR  +A+ +   M  + D   W SL+ G    GN+
Sbjct: 191 YCKCGRVEDAQALFELMDAR-DVISWNSLVSGYAQLGNI 228


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 154/413 (37%), Positives = 245/413 (59%), Gaps = 10/413 (2%)

Query: 65  NCLLDMYAKC-GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           N +L  Y K  G + +A  LFD++ E D  SYN M+  + +   +E A   F++MP +D 
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDI 167

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SW  +ISG+ +  Q  +A DL+ +M        N  + S+++S       L   +E++ 
Sbjct: 168 ASWNTLISGFAQNGQMQKAFDLFSVMPE-----KNGVSWSAMISGYVEHGDLEAAEELYK 222

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            +   G  S  VV +A+   Y K G +  A +IF +M  +++V+W +MI  Y +  R E+
Sbjct: 223 NV---GMKS-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAED 278

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
           G  +F  +I+S +RPN  + + VL  C++ +A  LG+Q+H  +++      + A ++L+ 
Sbjct: 279 GLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLIS 338

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY KCG+++++ K+F  MPR D++SW ++I+GYAQ+G   KAL  F+ +     +PD I 
Sbjct: 339 MYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWIT 398

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           FV V+ AC HAG VD G+QYF S+K++ G+     HY C++DLL R+GR  EA  +I +M
Sbjct: 399 FVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P KP   ++ +LLG CRIH NLDLA+ AA  L  ++P +   YV +ANIYA+ 
Sbjct: 459 PFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 147/328 (44%), Gaps = 38/328 (11%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ++++A  +   +   +   +S++I    ++  LE  ++++   K+ G K  V +   +L 
Sbjct: 182 QMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY---KNVGMK-SVVVETAMLT 237

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y K G +  A+ +F  M  +++ ++N+MI+G+ +    E    +F             M
Sbjct: 238 GYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFK-----------TM 286

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I   VR                      N  +LSSVL   S +  L LG+++H  + ++ 
Sbjct: 287 IESRVR---------------------PNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSP 325

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
              D    ++L  MY KCG ++ A ++F +M  +DV+SW AMI  Y Q G   +   LF 
Sbjct: 326 LSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFD 385

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKC 308
           ++    ++P+  TF  V+ AC      +LG Q    M +  G +      + ++ +  + 
Sbjct: 386 KMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRA 445

Query: 309 GNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           G ++ +  +   MP +P    + +L+  
Sbjct: 446 GRLDEAVSLIKEMPFKPHAAIYGTLLGA 473



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 110/274 (40%), Gaps = 54/274 (19%)

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ-EGRREEGFALFSE 250
           SD V  +     + +   +  AR +F+KM  R  V+W  M+  Y +  G+ +E   LF +
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           +                                        +P S + + ++  Y +   
Sbjct: 131 IP---------------------------------------EPDSVSYNIMLVCYLRSYG 151

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           VE +   FN MP  D+ SW +LI+G+AQNG   KA + F ++     + + + +  +++ 
Sbjct: 152 VEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM----PEKNGVSWSAMISG 207

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
               G ++   + + ++  K  +  TA     ++    + G+   AE +  +M +K +  
Sbjct: 208 YVEHGDLEAAEELYKNVGMKSVVVETA-----MLTGYMKFGKVELAERIFQRMAVK-NLV 261

Query: 431 LWASLLGG----CRIHGNLDLAKRAAEALFEIEP 460
            W S++ G    CR    L + K   E+     P
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNP 295


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 260/476 (54%), Gaps = 38/476 (7%)

Query: 3   DILCNQRRLKEALQILHQISHPSPS--IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           D+L  +R+LK ++  L +    S S  ++++++        +  G+++H     +G    
Sbjct: 187 DVL--RRQLKSSICFLEEKEKESDSDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGF 244

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V +SN L+ MY+KC                                SL +A  +FD    
Sbjct: 245 VALSNALVTMYSKCE-------------------------------SLNEACKMFDSSGD 273

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGK 179
           R++ +W+AM++GY +  + +EA+ L+  M  F   +  +++T+  VL+A S I  L  GK
Sbjct: 274 RNSITWSAMVTGYSQNGESLEAIKLFSRM--FSAGIKPSEYTIVGVLNACSDICYLVEGK 331

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           ++H ++++ GF+      +AL DMY K G + +AR+ FD + +RDV  WT++I  Y Q  
Sbjct: 332 QLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNS 391

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
             EE   L+  +  +GI PN  T A VL AC+  A  ELGKQVHG+  + G+       S
Sbjct: 392 DNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGS 451

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL  MY+KCG++E+   VF   P  D+VSW ++I+G + NG  D+ALE FE +L  GT+P
Sbjct: 452 ALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEP 511

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D + FV +++AC+H G V++G  YFH + ++ GL    DHYAC+VD+L+R+G+  E ++ 
Sbjct: 512 DDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEF 571

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           I    +     LW  LL  C+ HGN +L   A E L  +     +TYV +A IY +
Sbjct: 572 IESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTA 627



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 189/403 (46%), Gaps = 46/403 (11%)

Query: 38  QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNT 97
           Q+R L  G+ VH+ +  +G       +N L++ YAKCG ++ A ++F+ +  +DV S+N+
Sbjct: 28  QHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNS 87

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I+G+++ G +  +  +                            + L+R M+  ++ + 
Sbjct: 88  LITGYSQNGGISSSHTV----------------------------MQLFREMRA-QDILP 118

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG--SINEARQ 215
           N +TL+ +  A S++Q   +G++ H  +++     D  V ++L  MY K G   +     
Sbjct: 119 NAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYY 178

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            F     +DV+         F E + +E               + + F  VL++ A    
Sbjct: 179 GFWLCYKKDVLRRQLKSSICFLEEKEKES-------------DSDYVFTAVLSSLAATVY 225

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LG+Q+HG   + G   +   ++ALV MYSKC ++  + K+F+     + ++W++++ G
Sbjct: 226 VGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTG 285

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y+QNG   +A++ F  +  +G +P     VGVL AC+    + +G Q  HS   K G   
Sbjct: 286 YSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQ-LHSFLLKLGFER 344

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                  +VD+ A++G   +A      +  + D  LW SL+ G
Sbjct: 345 HLFATTALVDMYAKAGCLADARKGFDCLQER-DVALWTSLISG 386



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           N  S+  TL   L+  S  + L  G+ +H  I+RTG  +     + L + Y KCG + +A
Sbjct: 11  NPFSHTSTLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKA 70

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEG---RREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             IF+ ++ +DVVSW ++I  Y Q G          LF E+    I PNA+T AG+  A 
Sbjct: 71  HSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAE 130

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           +   +  +G+Q H  + ++      +  ++LV MY K G
Sbjct: 131 SSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAG 169



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 22/245 (8%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           RR+K A  I      P+    +S+++ C     LE GK+VH H    GF   V I + L 
Sbjct: 401 RRMKTAGII------PNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 454

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNF 124
            MY KCG++ D   +F     +DV S+N MISG +  G  ++A  LF+EM     + D+ 
Sbjct: 455 TMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDV 514

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQN---FENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           ++  +IS              + MM +    +  V +   +  VLS    +      KE 
Sbjct: 515 TFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQL------KET 568

Query: 182 HGYIMRTGFDSDEVVWSAL---SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
             +I     D    +W  L      +G C     A +    +  R+  ++  + G Y   
Sbjct: 569 KEFIESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTAL 628

Query: 239 GRREE 243
           GR  +
Sbjct: 629 GRMRD 633



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEE---LGKQVHGYMTRIGYDPYSFAASALVH 303
           ++    ++ I P + T + +L A   H+       G+ VH  + R G    +  A+ LV+
Sbjct: 1   MYPSTFQTEINPFSHT-STLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVN 59

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG---MPDKALEYFELLLKSGTQPD 360
            Y+KCG +  +  +FN +   D+VSW SLI GY+QNG        ++ F  +      P+
Sbjct: 60  FYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPN 119

Query: 361 HIVFVGVLTA 370
                G+  A
Sbjct: 120 AYTLAGIFKA 129


>gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa]
 gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/446 (36%), Positives = 252/446 (56%), Gaps = 5/446 (1%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    +S+ +  C   RA++EG ++H       F+    + + L+DMY KCG I  A+ 
Sbjct: 256 RPLSYTFSNALVACSDMRAVKEGMQIHGVATKINFEEEEVVLSSLIDMYVKCGEIESARR 315

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD    RD+ S+ +M+S +   G + +AR LFDEMP+R+  S+ A+++GY+R  Q  EA
Sbjct: 316 VFDLPGSRDLISWTSMVSAYAMSGRMREARELFDEMPERNMVSYNALLAGYIRSLQWEEA 375

Query: 143 LD-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           LD +Y M +  EN   +  T   +L+  S +  + +GK++HG+I R G+ S+ V+ +AL 
Sbjct: 376 LDFVYLMCRTTENI--DHITFQLMLNVCSGLSDVDMGKQVHGFIYRHGWLSNTVIGNALL 433

Query: 202 DMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
           DMY KCG++  A   F +M   RD VSW  ++  Y +    E+  ++F E+ +   +P+ 
Sbjct: 434 DMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTSYARRQMSEQAMSIFREM-QWETKPHK 492

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           F FA +L ACA+  A + GKQ+HG+M R GYD  +  A AL+ MYSKC  +E +  VF  
Sbjct: 493 FIFATLLAACANTFALDQGKQIHGFMIRNGYDIDTVIAGALLDMYSKCRCLEYALIVFRE 552

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
             + DLV W S+I G    G    AL  F  + + GT+PD++ F G+L AC + G VD  
Sbjct: 553 ADKRDLVLWNSMILGCCHLGRGKLALRLFGFMEEEGTKPDNVTFQGILLACVYEGHVDLA 612

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            QYF+S+  K+ +    +HY CI++LL+R G   E E+ I  MP  P   +   ++  C+
Sbjct: 613 RQYFNSMSSKYCIIPRLEHYECIIELLSRYGCMKELENFIKDMPFDPTAPMLTRVVDACK 672

Query: 441 IHGNLDLAKRAAEALFEIEPENPATY 466
            H    L + AA+ L E+ P  P  +
Sbjct: 673 EHQCWRLGEWAAKRLDELSPSVPLPF 698



 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 240/503 (47%), Gaps = 76/503 (15%)

Query: 10  RLKEALQILHQISHPSP-----SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           RLK+A+ IL      SP     S+Y+ L Q C  + A+ E +KV S L  +   P  F+ 
Sbjct: 40  RLKQAVSILF----ASPDCFAYSLYAHLFQVCSSSLAIVEARKVESQLLGACPTPPTFLL 95

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N  +D Y KC                                 LE A+ LFDEMPQRD  
Sbjct: 96  NRAIDTYGKCR-------------------------------CLEDAKELFDEMPQRDGG 124

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW AMI   ++  +P +AL  +  M   +   +N+ T SS L A   +  L L ++IHG 
Sbjct: 125 SWNAMIRACLQCVRPEKALSYFGDMHK-QGVYANEVTFSSALRACGDVLELCLSRQIHGL 183

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I++ GF  + +V S+L D+YGKCG+++E+R+IFD++ + + V+W  ++ RY + G   E 
Sbjct: 184 IVKYGFCGNVIVGSSLVDVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRYLEVGDENEA 243

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             +F ++ ++ +RP ++TF+  L AC+D  A + G Q+HG  T+I ++      S+L+ M
Sbjct: 244 VVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATKINFEEEEVVLSSLIDM 303

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG-----------MPDK--------- 344
           Y KCG +E++++VF+     DL+SWTS+++ YA +G           MP++         
Sbjct: 304 YVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREARELFDEMPERNMVSYNALL 363

Query: 345 -----------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
                      AL++  L+ ++    DHI F  +L  C+    VD G Q  H    +HG 
Sbjct: 364 AGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSDVDMGKQ-VHGFIYRHGW 422

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
                    ++D+  + G    A     +M    D   W  LL     +    ++++A  
Sbjct: 423 LSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTS---YARRQMSEQAMS 479

Query: 454 ALFEIEPENPATYVTMANIYASA 476
              E++ E        A + A+ 
Sbjct: 480 IFREMQWETKPHKFIFATLLAAC 502


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 163/491 (33%), Positives = 268/491 (54%), Gaps = 36/491 (7%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSH--LKSSGFKPGVFISNCLLDMYAKCGNI 77
           QI +    + ++ +  C  + AL  GK+VH+   +   G +    + + L+++Y KCG++
Sbjct: 161 QIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDL 220

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
             A  +   +++ D  S + +ISG+   G + +AR++FD         W ++ISGYV   
Sbjct: 221 DSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNG 280

Query: 138 QPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
           + +EA++L+  M    N V  +   ++++LSA S +  + L K++H Y  + G   D VV
Sbjct: 281 EEVEAVNLFSAM--LRNGVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVV 338

Query: 197 WSALSDMYGK-------------------------------CGSINEARQIFDKMVDRDV 225
            S+L D Y K                               CG I +A+ IF+ M  + +
Sbjct: 339 ASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTL 398

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           +SW +++    Q     E   +FS++ K  ++ + F+FA V++ACA  ++ ELG+QV G 
Sbjct: 399 ISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGK 458

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
              IG +     +++LV  Y KCG VE  +KVF+GM + D VSW +++ GYA NG   +A
Sbjct: 459 AITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEA 518

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L  F  +   G  P  I F GVL+AC H+GLV++G   FH++K  + +    +H++C+VD
Sbjct: 519 LTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVD 578

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
           L AR+G F EA D+I +MP + D  +W S+L GC  HGN  + K AAE + ++EPEN   
Sbjct: 579 LFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKTIGKMAAEQIIQLEPENTGA 638

Query: 466 YVTMANIYASA 476
           Y+ ++NI AS+
Sbjct: 639 YIQLSNILASS 649



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 224/511 (43%), Gaps = 102/511 (19%)

Query: 32  LIQFCRQNRALEEGKKVH-SHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           L++  +    L EG+++H + LK+      V ++N LL +Y++C N+ DA  LFDEM + 
Sbjct: 6   LVRTLQSWSTLREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQT 65

Query: 91  DVCSYNTM-------------------------------ISGFTKGGSLEQARNLFDEMP 119
           +  S+NT+                               +S F K G L+ A +LF+ MP
Sbjct: 66  NSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMP 125

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS---VSNKFTLSSVLSAVSAIQCLR 176
            +++  W ++I  Y R+  P +AL L++ M N + S     + F L++ L A +    L 
Sbjct: 126 SKNHLVWNSIIHSYSRHGHPGKALFLFKSM-NLDPSQIVYRDAFVLATALGACADSLALN 184

Query: 177 LGKEIHG--YIMRTGFDSDEVVWSALSDMYGKCGSIN----------------------- 211
            GK++H   ++   G + D V+ S+L ++YGKCG ++                       
Sbjct: 185 CGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISG 244

Query: 212 --------EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
                   EAR +FD  VD   V W ++I  Y   G   E   LFS ++++G++ +A   
Sbjct: 245 YANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAV 304

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIG-----------YDPYSFAAS------------- 299
           A +L+A +     EL KQ+H Y  + G            D YS   S             
Sbjct: 305 ANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKE 364

Query: 300 -------ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                   ++ +YS CG +E++K +FN MP   L+SW S++ G  QN  P +AL  F  +
Sbjct: 365 YDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQM 424

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
            K   + D   F  V++AC     ++ G Q F       GL         +VD   + G 
Sbjct: 425 NKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITI-GLESDQIISTSLVDFYCKCGF 483

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                 V   M +K D+  W ++L G   +G
Sbjct: 484 VEIGRKVFDGM-VKTDEVSWNTMLMGYATNG 513



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 46/251 (18%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL I  Q++     +    ++S+I  C    +LE G++V     + G +    IS  L+
Sbjct: 416 EALNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLV 475

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           D Y KCG +   + +FD M + D  S+NTM+ G+   G   +A  LF EM       W +
Sbjct: 476 DFYCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGG--VWPS 533

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI-----HG 183
            I                              T + VLSA      +  G+ +     H 
Sbjct: 534 AI------------------------------TFTGVLSACDHSGLVEEGRNLFHTMKHS 563

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRRE 242
           Y +  G +     +S + D++ + G   EA  + ++M    D   W +++      G + 
Sbjct: 564 YNINPGIEH----FSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKT 619

Query: 243 EGFALFSELIK 253
            G     ++I+
Sbjct: 620 IGKMAAEQIIQ 630


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 260/472 (55%), Gaps = 41/472 (8%)

Query: 12  KEALQIL----HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +     H+  H     Y + +  C    AL+EGK +HS +   GF+  + +   L
Sbjct: 326 REALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQS-LVVHTAL 384

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN-FSW 126
           L MYAKCG                                L+ AR +F+ + Q+ N + W
Sbjct: 385 LTMYAKCGE-------------------------------LDAARAVFNRVRQKRNVYCW 413

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMIS Y +     EAL+LY  M   E +  N++T S+VL+A S+   L  G +IHG++ 
Sbjct: 414 TAMISAYAQAGHTQEALELYDQMVA-EGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVE 472

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +   S+  V +AL  MY KCGS+  A+  F+    +D+VSW AMIG Y Q G   E   
Sbjct: 473 NSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALD 532

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMY 305
           L+  +   G+ P+  T A  L+ACA   + +LG+++H  + +   +       +ALV+MY
Sbjct: 533 LYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMY 592

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE-YFELLLKSGTQPDHIVF 364
            +CG +E ++ +F  M + D++SWT++ + YAQ G  D+ L+ Y E++L  G +P+ I F
Sbjct: 593 GRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLH-GIRPNEITF 651

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             +L  C+HAGL+ +G++ F  ++ +H +    +H+ C+VDLL RSGR  +AE ++  MP
Sbjct: 652 TSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMP 711

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +PD   W ++LG C+ H + D AKRAA  + E++PEN + Y  +++I+ +A
Sbjct: 712 YQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTAA 763



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 202/429 (47%), Gaps = 41/429 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + +AL+ L Q  H    +Y  L+Q C +  +L EGK VH HL  +G     F+ N L+ M
Sbjct: 27  VSDALEQLDQRRHGYVELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQM 86

Query: 71  YAKCGNISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           Y  CG I  A+  F      + V  YN M+S + K G   +A  L+  M +         
Sbjct: 87  YGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCE--------- 137

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
                                  E    +K T   VL + SA+  LR  +EIH  I+   
Sbjct: 138 -----------------------EGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAP 174

Query: 190 --FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
                +  + +AL +MYGKCGS+ EAR++FD + +RD VSWT+MI  Y   G  +E   L
Sbjct: 175 QIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDL 234

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           + ++   GI+P++ TF   L AC        GK +H  +     +   F  SAL++MY++
Sbjct: 235 YQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMES-DFVGSALINMYAR 290

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+V ++++ F  +    +V WTSL+  Y Q     +AL+ +  +   G   D + +V  
Sbjct: 291 CGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTA 350

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L AC   G + +G +  HS   + G      H A ++ + A+ G    A  V +++  K 
Sbjct: 351 LGACASLGALKEG-KAIHSRVFECGFQSLVVHTA-LLTMYAKCGELDAARAVFNRVRQKR 408

Query: 428 DKFLWASLL 436
           + + W +++
Sbjct: 409 NVYCWTAMI 417



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 219/460 (47%), Gaps = 37/460 (8%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKS----------SGFKPGVFISNCLLD 69
           QI   + S+ ++L+    +  ++EE +KV   +K+          S +    F     LD
Sbjct: 175 QIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEA-LD 233

Query: 70  MYAK-------------------CGNISDAQTLFDEMQERDVCS---YNTMISGFTKGGS 107
           +Y +                   C  + D + +   +   ++ S    + +I+ + + G 
Sbjct: 234 LYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGSALINMYARCGD 293

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           +  AR  F+++  +    WT++++ YV+     EALDLY  M + E   ++  T  + L 
Sbjct: 294 VSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRM-DHEGVHADGVTYVTALG 352

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVV 226
           A +++  L+ GK IH  +   GF S  VV +AL  MY KCG ++ AR +F+++   R+V 
Sbjct: 353 ACASLGALKEGKAIHSRVFECGFQS-LVVHTALLTMYAKCGELDAARAVFNRVRQKRNVY 411

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
            WTAMI  Y Q G  +E   L+ +++  G RPN +TF+ VL AC+     E G ++HG++
Sbjct: 412 CWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHV 471

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
                       +ALV MY+KCG++E +K  F    R DLVSW ++I  YAQ+G+  +AL
Sbjct: 472 ENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREAL 531

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           + ++ +   G  PD +     L+AC  +G +  G +    + +      +      +V++
Sbjct: 532 DLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNM 591

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
             R GR   A  +   M  + D   W ++       G+ D
Sbjct: 592 YGRCGRLETARSMFEDMGQR-DVLSWTAMTSAYAQQGHAD 630



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 49/345 (14%)

Query: 173 QCLRLG-----KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVV 226
           QC RLG     K +H +++RTG   ++ + + L  MYG CG I+ AR  F      + V 
Sbjct: 51  QCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVA 110

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
            +  M+  Y + G       L+  + + G  P+  T+  VL +C+   +    +++H  +
Sbjct: 111 CYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASI 170

Query: 287 T---RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
               +I  D  S   +ALV+MY KCG+VE ++KVF+G+   D VSWTS+I+ YA NG  D
Sbjct: 171 IEAPQIIRDNLSLQ-NALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCD 229

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACT--------HAGLVDKGL-------------- 381
           +AL+ ++ +   G QPD I F   L ACT        HA +V   +              
Sbjct: 230 EALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGSALINMYA 289

Query: 382 ---------QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP---MKPDK 429
                    Q F  I+ KH + +T+     ++    ++  + EA D+  +M    +  D 
Sbjct: 290 RCGDVSSARQAFEKIQNKHVVCWTS-----LMTAYVQTCHYREALDLYGRMDHEGVHADG 344

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
             + + LG C   G L   K     +FE   ++   +  +  +YA
Sbjct: 345 VTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYA 389


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 235/436 (53%), Gaps = 33/436 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           +EEG+++HS L   GF       N L+ MYAKC                           
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKC--------------------------- 33

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
               G L++AR +F+ + +R   SW+AMI  Y  + +  EAL L+  M+N      N  T
Sbjct: 34  ----GCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMT 89

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            + V +A   I+ L  G+EIH   M +G    S+ ++ +AL +MY +CGS+ EAR++FD 
Sbjct: 90  FTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDT 149

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M   D  SWT+MI    +     E   LF  +   GI P + T A VLNACA   A ++G
Sbjct: 150 MDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVG 209

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           KQ+H  +   G+     A +AL+ MY+KCG++E S KVF  M   + VSWT++IA  AQ+
Sbjct: 210 KQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQH 269

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G  D+ALE F+ +   G   D   F+ VL AC+HAGL+ + L++FHS+ E + +  T  H
Sbjct: 270 GQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETH 329

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
           Y   +D + R+GR  +AE++I  MP  P+   W +LL  CRIH   + A + AE L ++ 
Sbjct: 330 YCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLA 389

Query: 460 PENPATYVTMANIYAS 475
           PE+   Y  + N+YA+
Sbjct: 390 PEDSMAYTLLGNVYAA 405



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 186/393 (47%), Gaps = 53/393 (13%)

Query: 10  RLKEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG--FKPGVF 62
           R +EAL + H++ +     P+   ++ +   C     LE+G+++H+   +SG        
Sbjct: 66  RGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAI 125

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + N LL+MY +CG++ +A+ +FD M   D  S+ +MI+  T+   L              
Sbjct: 126 LENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCEL-------------- 171

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                            +EAL+L+  M N E       TL+SVL+A +    L++GK+IH
Sbjct: 172 -----------------LEALELFHRM-NLEGIPPTSVTLASVLNACACSGALKVGKQIH 213

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
             +  +GF S  +  +AL DMY KCGS+  + ++F  M  R+ VSWTAMI    Q G+ +
Sbjct: 214 SRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGD 273

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAA--EELGKQVHGYMTRIGYDPYSFAASA 300
           E   LF E+   G+  +A TF  VL AC+ HA   +E  +  H  +      P       
Sbjct: 274 EALELFKEMNLEGMVADATTFICVLRACS-HAGLIKESLEFFHSMVEDYAIAPTETHYCR 332

Query: 301 LVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            +    + G +++++++ + MP  P+ ++W +L+     +   ++A +  ELL K   + 
Sbjct: 333 ALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPED 392

Query: 360 DHI-VFVGVLTACT---------HAGLVDKGLQ 382
                 +G + A T           G+ D+GL+
Sbjct: 393 SMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLK 425


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 262/468 (55%), Gaps = 34/468 (7%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +  +K  +++++Q   P     +S++Q C     LE GK VH ++ +SG++     SN L
Sbjct: 299 EESIKLFMEMVNQFK-PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNIL 357

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           ++MYAKC                               G+L  ++ +F  M  +D+ SW 
Sbjct: 358 INMYAKC-------------------------------GNLLASQEVFSGMKCKDSVSWN 386

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI+ Y++     EA+ L++MM+   +   +  T   +LS  + +  L LGKE+H  + +
Sbjct: 387 SMINVYIQNGSFDEAMKLFKMMKT--DVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK 444

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF+S+ VV + L DMY KCG + ++ ++F+ M  RD+++W  +I           G  +
Sbjct: 445 MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 504

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
            S +   G+ P+  T   +L  C+  AA+  GK++HG + ++G +      + L+ MYSK
Sbjct: 505 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSK 564

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG++ NS +VF  M   D+V+WT+LI+     G   KA+  F  +  +G  PDH+ FV +
Sbjct: 565 CGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAI 624

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           + AC+H+GLV++GL YFH +K+ + +    +HYAC+VDLL+RS    +AED I  MP+KP
Sbjct: 625 IFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKP 684

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           D  +W +LL  CR+ G+ ++A+R +E + E+ P++   YV ++NIYA+
Sbjct: 685 DSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAA 732



 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 135/417 (32%), Positives = 206/417 (49%), Gaps = 36/417 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    + S+I  C      E  K +H  +   GF   ++I N L+DMY +  ++  A+ 
Sbjct: 112 QPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARK 171

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+EM  RDV S+N++ISG+   G                   W              EA
Sbjct: 172 VFEEMPLRDVVSWNSLISGYNANG------------------YWN-------------EA 200

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L++Y   +N    V + +T+SSVL A   +  +  G  IHG I + G   D +V + L  
Sbjct: 201 LEIYYRFRNL-GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 259

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY K   + + R+IFDKMV RD VSW  MI  Y Q G  EE   LF E++    +P+  T
Sbjct: 260 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLT 318

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L AC      E GK VH YM   GY+  + A++ L++MY+KCGN+  S++VF+GM 
Sbjct: 319 ITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 378

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D VSW S+I  Y QNG  D+A++ F+ ++K+  +PD + +V +L+  T  G +  G +
Sbjct: 379 CKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLG-K 436

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
             H    K G          +VD+ A+ G   ++  V   M  + D   W +++  C
Sbjct: 437 ELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASC 492



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 224/493 (45%), Gaps = 74/493 (15%)

Query: 2   IDILCNQRRL-------------------------------KEALQILHQISH----PSP 26
           ID+ C    L                                EAL+I ++  +    P  
Sbjct: 157 IDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDS 216

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
              SS+++ C    ++EEG  +H  ++  G K  V ++N LL MY K   + D + +FD+
Sbjct: 217 YTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDK 276

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M  RD  S+NTMI G+++ G  E++  LF EM               V   +P    DL 
Sbjct: 277 MVLRDAVSWNTMICGYSQVGLYEESIKLFMEM---------------VNQFKP----DL- 316

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
                         T++S+L A   +  L  GK +H Y++ +G++ D    + L +MY K
Sbjct: 317 -------------LTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAK 363

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG++  ++++F  M  +D VSW +MI  Y Q G  +E   LF +++K+ ++P++ T+  +
Sbjct: 364 CGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVML 422

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+         LGK++H  + ++G++     ++ LV MY+KCG + +S KVF  M   D+
Sbjct: 423 LSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 482

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           ++W ++IA    +   +  L     +   G  PD    + +L  C+      +G +  H 
Sbjct: 483 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG-KEIHG 541

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              K GL         ++++ ++ G    +  V   M  K D   W +L+  C ++G   
Sbjct: 542 CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE-- 598

Query: 447 LAKRAAEALFEIE 459
             K+A  A  E+E
Sbjct: 599 -GKKAVRAFGEME 610



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 221/462 (47%), Gaps = 40/462 (8%)

Query: 13  EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           + L++LH+ S  +  ++SS+ +         +  K+HS + + G    V  S  L+  YA
Sbjct: 2   KTLRVLHECSRQT--LFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYA 59

Query: 73  KCGNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
              + + + ++F       +V  +N++I   T  G   +A +L+ E  QR          
Sbjct: 60  HFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSE-TQRIRL------- 111

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
                 QP                  + +T  SV++A + +    + K IH  ++  GF 
Sbjct: 112 ------QP------------------DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFG 147

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           SD  + +AL DMY +   +++AR++F++M  RDVVSW ++I  Y   G   E   ++   
Sbjct: 148 SDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRF 207

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
              G+ P+++T + VL AC    + E G  +HG + +IG        + L+ MY K   +
Sbjct: 208 RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGL 267

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
            + +++F+ M   D VSW ++I GY+Q G+ +++++ F + + +  +PD +    +L AC
Sbjct: 268 IDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF-MEMVNQFKPDLLTITSILQAC 326

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
            H G ++ G +Y H      G          ++++ A+ G    +++V S M  K D   
Sbjct: 327 GHLGDLEFG-KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVS 384

Query: 432 WASLLGGCRIHGNLDLAKRAAEAL-FEIEPENPATYVTMANI 472
           W S++     +G+ D A +  + +  +++P++  TYV + ++
Sbjct: 385 WNSMINVYIQNGSFDEAMKLFKMMKTDVKPDS-VTYVMLLSM 425


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 254/456 (55%), Gaps = 34/456 (7%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P      SL+        L++GK+VH ++  +     VF+ + L+D+Y KC ++  AQ
Sbjct: 339 ARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQ 398

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            L+D  +  DV   +T                               MISGYV      E
Sbjct: 399 NLYDAARAIDVVIGST-------------------------------MISGYVLNGMSEE 427

Query: 142 ALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           AL ++R +   E  +  N  T++SVL   +++  L LG++IHGY++R  ++    V SAL
Sbjct: 428 ALQMFRYL--LEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESAL 485

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            DMY KCG ++ +  IF KM  +D V+W +MI  + Q G+ +E   LF ++   GI+ N 
Sbjct: 486 MDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNN 545

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T +  L+ACA   A   GK++HG   +       FA SAL+ MY+KCGN+E + +VF  
Sbjct: 546 ITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEF 605

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           MP  + VSW S+I+ Y  +G+  +++     + + G +PDH+ F+ +++AC HAGLV++G
Sbjct: 606 MPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEG 665

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           +Q F  + +K+ +    +H+AC+VDL +RSG+  +A   I+ MP KPD  +W +LL  CR
Sbjct: 666 VQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACR 725

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +H N++LA  A++ LF+++P N   YV M+NI A A
Sbjct: 726 VHRNVELADIASQELFKLDPANSGYYVLMSNINAVA 761



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 194/415 (46%), Gaps = 36/415 (8%)

Query: 24  PSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           PSP  ++   +++ C    A+  G+ VH   ++ G    V++ + L+ MYA         
Sbjct: 137 PSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYAD-------- 188

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                   G L  AR+ FD +P+RD   W  M+ G ++      
Sbjct: 189 -----------------------AGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDG 225

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+ L+R M+       N  TL+  LS  +    L  G ++H   ++ G + +  V + L 
Sbjct: 226 AVRLFRNMRA-SGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLL 284

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
            MY KC  +++A ++F+ M   D+V+W  MI    Q G   E F LF ++ +SG RP++ 
Sbjct: 285 AMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSI 344

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   +L A  D    + GK+VHGY+ R   +   F  SALV +Y KC +V  ++ +++  
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAA 404

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+V  +++I+GY  NGM ++AL+ F  LL+   +P+ +    VL  C     +  G 
Sbjct: 405 RAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLG- 463

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           Q  H    ++         + ++D+ A+ GR   +  +  KM  K D+  W S++
Sbjct: 464 QQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQK-DEVTWNSMI 517



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 142/302 (47%), Gaps = 11/302 (3%)

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           +  ++  +        A  +F  +P+     +  W  +I G+    Q   A+  Y  M +
Sbjct: 73  HTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWS 132

Query: 152 FENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
              + S +  TL  V+ + +A+  + LG+ +H      G  +D  V SAL  MY   G +
Sbjct: 133 HPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLL 192

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             AR  FD + +RD V W  M+    + G  +    LF  +  SG  PN  T A  L+ C
Sbjct: 193 GNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVC 252

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  A    G Q+H    + G +P    A+ L+ MY+KC  ++++ ++F  MP+ DLV+W 
Sbjct: 253 ATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWN 312

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +I+G  QNG+  +A   F  + +SG +PD I  V +L A T    + +G       KE 
Sbjct: 313 GMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQG-------KEV 365

Query: 391 HG 392
           HG
Sbjct: 366 HG 367


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/500 (34%), Positives = 263/500 (52%), Gaps = 38/500 (7%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL----- 68
           A ++  +I  PS  I++++I+   +    E G  ++  +     KP  F    LL     
Sbjct: 88  ARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTK 147

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DM  K G +     +     + ++      I  F+  G +  AR +FD     +  +W  
Sbjct: 148 DMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNV 207

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           ++SGY R+ +  E+  L+  M+     VS N  TL  +LSA S ++ L  GK I+   ++
Sbjct: 208 VLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIK 267

Query: 188 TGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV--------------------- 225
            G  + + ++ +AL DM+  CG ++ AR +FD+M  RDV                     
Sbjct: 268 EGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARK 327

Query: 226 ----------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
                     VSWTAMI  Y +  R +E   LF ++  S ++P+ FT   +L ACA   A
Sbjct: 328 YFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGA 387

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            ELG+    Y+ +      +F  +AL+ MY KCGNVE +KK+FN M + D  +WT++I G
Sbjct: 388 LELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVG 447

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
            A NG  ++AL  F  +L++   PD I ++GV+ ACTH GLV KG  +F ++  +HG+  
Sbjct: 448 LANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKP 507

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
              HY C+VDLL R+G   EA +VI  MP+KP+  +W SLLG CR+H N+ LA+ AA  +
Sbjct: 508 NLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEI 567

Query: 456 FEIEPENPATYVTMANIYAS 475
            E+EPEN A YV + NIYA+
Sbjct: 568 LELEPENGAVYVLLCNIYAA 587



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 178/376 (47%), Gaps = 38/376 (10%)

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           + G +  AR +FDE+PQ   F W  MI GY R N     + LY++M    N   + FT  
Sbjct: 81  ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLML-VHNIKPDGFTFP 139

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
            +L   +    L+ GK +  + +  GF DS+  V      ++  CG +N AR+IFD    
Sbjct: 140 FLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDG 199

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGK 280
            +VV+W  ++  Y +  R EE   LF E+ K    + PN+ T   +L+AC+       GK
Sbjct: 200 WEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGK 259

Query: 281 QVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
            ++    + G  +P     +AL+ M++ CG ++ ++ VF+ M   D++SWTS++ G+A  
Sbjct: 260 CIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANT 319

Query: 340 GMPDKALEYFELLLK-------------------------------SGTQPDHIVFVGVL 368
              D A +YF+ + +                               S  +PD    V +L
Sbjct: 320 CRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSIL 379

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           TAC H G ++ G ++  +  +K+ +         ++D+  + G   +A+ + ++M  K D
Sbjct: 380 TACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKD 437

Query: 429 KFLWASLLGGCRIHGN 444
           KF W +++ G   +G+
Sbjct: 438 KFTWTAMIVGLANNGH 453



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 40/239 (16%)

Query: 2   IDILCNQRRLKEALQILH--QISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID      R KE L +    Q+S+  P  ++  S++  C    ALE G+   +++  +  
Sbjct: 344 IDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKI 403

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           K   FI N L+DMY KCGN+  A+ +F+EMQ++D  ++  MI G    G  E+A  +F  
Sbjct: 404 KNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSY 463

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLR 176
           M                                  E SV+ ++ T   V+ A + +  + 
Sbjct: 464 M---------------------------------LEASVTPDEITYIGVMCACTHVGLVA 490

Query: 177 LGKEIHGYI-MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            GK     + ++ G   +   +  + D+ G+ G + EA ++   M V  + + W +++G
Sbjct: 491 KGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLG 549


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 254/452 (56%), Gaps = 35/452 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           + + ++  C + R L++GK+VH  ++  GF     + N ++DMY+KC             
Sbjct: 6   LLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKC------------- 52

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                             G + +A  +F+ +P R+  SW AMI+GY       EAL+L+R
Sbjct: 53  ------------------GMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFR 94

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD--SDEVVWSALSDMYG 205
            M+  +  V + +T SS L A S       G +IH  ++R GF   +   V  AL D+Y 
Sbjct: 95  EMRE-KGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYV 153

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KC  + EAR++FD++ ++ V+SW+ +I  Y QE   +E   LF EL +S  R + F  + 
Sbjct: 154 KCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSS 213

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNGMPRP 324
           ++   AD A  E GKQ+H Y  ++ Y     + A++++ MY KCG    +  +F  M   
Sbjct: 214 IIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLER 273

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           ++VSWT +I GY ++G+ +KA+E F  + ++G +PD + ++ VL+AC+H+GL+ +G +YF
Sbjct: 274 NVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYF 333

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             +     +    +HYAC+VDLL R GR  EA+++I KMP+KP+  +W +LL  CR+HG+
Sbjct: 334 SILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGD 393

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +++ K+  E L   E  NPA YV ++N+YA A
Sbjct: 394 VEMGKQVGEILLRREGNNPANYVMVSNMYAHA 425



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 175/325 (53%), Gaps = 20/325 (6%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           +S    L+ +L+  S  + L  GK++HG + + GFD   VV +++ DMY KCG + EA +
Sbjct: 1   MSESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAAR 60

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA--CADH 273
           +F+ +  R+V+SW AMI  Y  E   EE   LF E+ + G  P+ +T++  L A  CAD 
Sbjct: 61  VFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADA 120

Query: 274 AAEELGKQVHGYMTRIGYDPY---SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A E  G Q+H  + R G+ PY   S  A ALV +Y KC  +  ++KVF+ +    ++SW+
Sbjct: 121 AGE--GMQIHAALIRHGF-PYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWS 177

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKE 389
           +LI GYAQ     +A++ F  L +S  + D  V   ++       L+++G Q + ++IK 
Sbjct: 178 TLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKV 237

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            +GL   +   + ++D+  + G   EA+ +  +M ++ +   W  ++ G   HG   +  
Sbjct: 238 PYGLLEMSVANS-VLDMYMKCGLTVEADALFREM-LERNVVSWTVMITGYGKHG---IGN 292

Query: 450 RAAEALFE-----IEPENPATYVTM 469
           +A E   E     IEP++  TY+ +
Sbjct: 293 KAVELFNEMQENGIEPDS-VTYLAV 316



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 196/394 (49%), Gaps = 44/394 (11%)

Query: 7   NQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK--PG 60
           N+R  +EAL +  ++      P    YSS ++ C    A  EG ++H+ L   GF     
Sbjct: 82  NERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQ 141

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
             ++  L+D+Y KC  +++A+ +FD ++E+ V S++T+I G+                 Q
Sbjct: 142 SAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYA----------------Q 185

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
            DN                 EA+DL+R ++   + + + F LSS++   +    L  GK+
Sbjct: 186 EDNLK---------------EAMDLFRELRESRHRM-DGFVLSSIIGVFADFALLEQGKQ 229

Query: 181 IHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           +H Y ++  +   E+ V +++ DMY KCG   EA  +F +M++R+VVSWT MI  Y + G
Sbjct: 230 MHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHG 289

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAA 298
              +   LF+E+ ++GI P++ T+  VL+AC+     + GK+    + +     P     
Sbjct: 290 IGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHY 349

Query: 299 SALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSG 356
           + +V +  + G ++ +K +   MP +P++  W +L++    +G  +   +  E+LL + G
Sbjct: 350 ACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREG 409

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
             P + V V  + A  HAG   +  +   ++K K
Sbjct: 410 NNPANYVMVSNMYA--HAGYWKESEKIRETLKRK 441



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 140/364 (38%), Gaps = 108/364 (29%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-----G 56
           +D+    RR+ EA ++  +I   S   +S+LI    Q   L+E   +   L+ S     G
Sbjct: 149 VDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDG 208

Query: 57  FK----PGVF---------------------------ISNCLLDMYAKCGNISDAQTLFD 85
           F      GVF                           ++N +LDMY KCG   +A  LF 
Sbjct: 209 FVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFR 268

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
           EM ER+V S+  MI+G+ K G   +A  LF+EM                           
Sbjct: 269 EMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQ-------------------------- 302

Query: 146 YRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV-WSALSDM 203
                  EN +  +  T  +VLSA S    ++ GK+    +        +V  ++ + D+
Sbjct: 303 -------ENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDL 355

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
            G+ G + EA+ + +KM                                   ++PN   +
Sbjct: 356 LGRGGRLKEAKNLIEKM----------------------------------PLKPNVGIW 381

Query: 264 AGVLNACADHAAEELGKQV-HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L+ C  H   E+GKQV    + R G +P ++   +  +MY+  G  + S+K+   + 
Sbjct: 382 QTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVS--NMYAHAGYWKESEKIRETLK 439

Query: 323 RPDL 326
           R  L
Sbjct: 440 RKGL 443


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 249/453 (54%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +++ C    AL EGK+VH ++   GF   VF+ + L+ MY++ G     +TL
Sbjct: 126 PDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSG-----ETL 180

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
             E+                          +F EM  R+  SWTA+I+GYV+     E L
Sbjct: 181 GMEL--------------------------VFGEMVVRNIVSWTAVIAGYVQNRYFKEGL 214

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++R M     +  N  TL SVL A + ++ L LGK IHGY ++ G D D  + +AL  +
Sbjct: 215 GVFREMVG-SGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIAL 273

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG++  AR +FD MV +++VSW AMI  Y Q         LF  +    +  +  T 
Sbjct: 274 YGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITM 333

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             V++ACA   A   G+ +H  + R G +      +AL+ MY+KCGN++ +++VF  +P 
Sbjct: 334 VSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPC 393

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             +VSWTS+I   A +G  + AL+ F  +   G +P+   F  V TAC H+GLV++G ++
Sbjct: 394 RSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKH 453

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+   + +    +H AC+VDLL R+G   EA + I KMP++PD  +W +LLG CRIH 
Sbjct: 454 FESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHS 513

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           NL+LA+  AE LF ++P+    YV M+NIYA A
Sbjct: 514 NLELAELVAEKLFLLDPQTVTFYVLMSNIYAEA 546


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 260/480 (54%), Gaps = 63/480 (13%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y   ++ C +++A    KK+H+ +  SG      + N LLD Y KC  + D         
Sbjct: 5   YLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQD--------- 55

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                 A  LFDEMPQRD+ SW ++++ Y +   P + L ++  
Sbjct: 56  ----------------------AHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHY 93

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M   +    + F  +++L A +++  LRLGK++H   + + F  D+VV S+L DMY KCG
Sbjct: 94  MFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCG 153

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF---------------SELIK 253
             + AR +FD ++ +  VSWTAM+  Y + G ++E   LF               S L++
Sbjct: 154 LPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQ 213

Query: 254 SG-----------IRP------NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           SG           +R       +    + V+ ACA+ A   LGKQ+HG +   GY+   F
Sbjct: 214 SGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLF 273

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
            ++ALV MY+KC ++  ++ VFN M   D+VSWTS+I G AQ+G   +AL+ ++ ++ + 
Sbjct: 274 ISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAE 333

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +P+ + FVG++ AC+HAGLV KG + F ++ E + ++ +   + C +DLL+RSG  +EA
Sbjct: 334 IKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEA 393

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ED+I  MP KPD+  WA+LL  C+ HGN ++  R A+ L  +    P+TYV ++N+YA A
Sbjct: 394 EDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGA 453



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 195/357 (54%), Gaps = 12/357 (3%)

Query: 7   NQRRL-KEALQILHQI-----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           NQ +L  + L I H +       P   +Y++L++ C    +L  GK+VH+    S F   
Sbjct: 79  NQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDD 138

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
             + + L+DMYAKCG  S A+++FD +  +   S+  M+SG+ + G  ++A  LF   P 
Sbjct: 139 DVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPV 198

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R+ +SWTA+ISG V+    I+   ++  M+     + +   LSSV+ A + +  L LGK+
Sbjct: 199 RNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQ 258

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHG ++ +G++S   + +AL DMY KC  I  AR +F++M+ RDVVSWT++I    Q GR
Sbjct: 259 IHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGR 318

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT---RIGYDPYSFA 297
            +E   L+ +++ + I+PN  TF G++ AC+       G+++   M    RI   P    
Sbjct: 319 AKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRIS--PSLQL 376

Query: 298 ASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
            +  + + S+ G++  ++ +   MP +PD  +W +L++    +G  +  +   + LL
Sbjct: 377 FTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLL 433


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 249/452 (55%), Gaps = 32/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ ++Y SL+Q C     LE GK++HSH+  +     + +   + +MY +CG        
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCG-------- 237

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   LE A+ +FD M  ++  +WT ++ GY +  +   AL
Sbjct: 238 -----------------------WLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVAL 274

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M   E    ++F  S VL     ++   +G++IH +I++ G +S+  V + L D 
Sbjct: 275 ELFARMA-MEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDF 333

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG I  A + F ++ + + VSW+A+I  + Q GR E+   +F+ L   G+  N+F +
Sbjct: 334 YVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIY 393

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             V  ACA  A   +G Q HG   + G   Y +  SA+V MYSKCG ++ +++ F  +  
Sbjct: 394 TSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDE 453

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           PD V+WT++I+GYA +G   +AL +F  +   G +P+ + F+ VLTAC+H+GLV +  QY
Sbjct: 454 PDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQY 513

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             S+   +G+  T DHY C++D  +R+G   EA ++I++MP +PD   W SLLGGC  H 
Sbjct: 514 LGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHC 573

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +L L K AAE LF ++P + A Y+ + N+Y++
Sbjct: 574 DLKLGKIAAENLFRLDPGDTAGYILLFNLYSA 605



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 222/455 (48%), Gaps = 44/455 (9%)

Query: 5   LCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L  Q +LKEA   L ++       +P  Y  L + C + R+L +G+ +H  L+ +   P 
Sbjct: 62  LSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPS 121

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
             I NCLL MY  CG+  D Q +FDEM  +++ S+  +IS + K G LE+A  LF +M  
Sbjct: 122 GSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQA 181

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                     SG +R N  +        M   ++ +   F              L LGK+
Sbjct: 182 ----------SG-IRPNSAV-------YMSLLQSCLGPSF--------------LELGKQ 209

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH +++R   +++  V +A+ +MY +CG +  A+ +FD M  ++ V+WT ++  Y Q  +
Sbjct: 210 IHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKK 269

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E    LF+ +   G+  + F F+ VL  C      ++G+Q+H ++ ++G +      + 
Sbjct: 270 LEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTP 329

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV  Y KCG++E++ + F  +  P+ VSW++LI+G++Q+G  +  ++ F  L   G   +
Sbjct: 330 LVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLN 389

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
             ++  V  AC     ++ G Q  H    K GL       + +V + ++ GR   A    
Sbjct: 390 SFIYTSVFQACAAQANLNMGSQA-HGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAF 448

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +  +PD   W +++ G   HGN      AAEAL
Sbjct: 449 ESID-EPDAVAWTAIISGYAYHGN------AAEAL 476


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  300 bits (768), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 266/452 (58%), Gaps = 18/452 (3%)

Query: 29  YSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +++L+  + R NR +EE +++   +        V   N +++ YA+ G I  A  LF++M
Sbjct: 132 WTALVSGYVRWNR-IEEARRLFDAMPVKN----VISWNTMIEGYARKGWIDQALDLFEKM 186

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            ER+V S+NT+I+ F +   +++A+ LF+ MP+RD  SWT M++G  +  +  +A  L+ 
Sbjct: 187 PERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFD 246

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M      V N  + ++++  +   Q +RL +     +     + +   W+ +   + + 
Sbjct: 247 KM-----PVRNVVSWNTMI--IGYAQNMRLDEAFK--LFEQMPERELSSWNTMITGFIQN 297

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGV 266
           G +  A   F KM +++VV+WTA+I  + Q+GR EE   +FSE+   + ++PN  TF  V
Sbjct: 298 GKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN--GMPRP 324
           L AC+  AA   G+Q+H  +++  Y   +   SAL++MYSKCG +E ++K+F+   +   
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+VSW  +IA YA +G   KA+  F+ +   G +PD++ ++ +L+AC+HAGLVD+GL+ F
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLF 477

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            ++     +    DH+ C+VDL  R+GR  EA D I  + +KP   +WA+LL GC +HG+
Sbjct: 478 ENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH 537

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +DL K  AE L E EPEN  TY+ ++NIYAS 
Sbjct: 538 IDLGKLTAEKLLETEPENAGTYLVLSNIYAST 569



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 196/402 (48%), Gaps = 23/402 (5%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG 106
           K+ S ++       V  SN L+    K G I +A+ +F+EM +RDV S+  +I+G+ K G
Sbjct: 52  KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111

Query: 107 SLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
            +E+A+ LFD      N  +WTA++SGYVR+N+  EA  L+  M   +N +S    +   
Sbjct: 112 MIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMP-VKNVISWNTMIEGY 170

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
                  Q L L +++         + + V W+ +   + +   ++EA+++F++M +RDV
Sbjct: 171 ARKGWIDQALDLFEKMP--------ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV 222

Query: 226 VSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           +SWT M+    + GR ++   LF ++ +++ +  N        N   D A +   +    
Sbjct: 223 ISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPER 282

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
            ++         + + ++  + + G +E +   F  M   ++V+WT++I+G+ Q+G  ++
Sbjct: 283 ELS---------SWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEE 333

Query: 345 ALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           AL+ F E+   +  +P+   FV VL AC+    + +G Q  H I  K      AD  + +
Sbjct: 334 ALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG-QQIHQIISKTVYQEVADVVSAL 392

Query: 404 VDLLARSGRFHEAEDVISKMPM-KPDKFLWASLLGGCRIHGN 444
           +++ ++ G    A  +     +   D   W  ++     HG+
Sbjct: 393 INMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGH 434


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/445 (36%), Positives = 256/445 (57%), Gaps = 22/445 (4%)

Query: 42  LEEGKKVHSHLKSSGF-KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           L+ G+++H+     G+    V ++N L++MY KCG I D              + N +++
Sbjct: 108 LKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGD-----------KTFTNNALMA 156

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
            + K G ++ ++ LF+    RD  SW  MIS + + ++  EAL  +R+M   E    +  
Sbjct: 157 MYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV-LEGVELDGV 215

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEARQIFDK 219
           T++SVL A S ++ L +GKEIH Y++R      +  V SAL DMY  C  +   R++FD 
Sbjct: 216 TIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDH 275

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADH-AAEE 277
           ++ R +  W AMI  Y + G  E+   LF E+IK +G+ PN  T A V+ AC    AA  
Sbjct: 276 ILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIA 335

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            GK++H Y  R          SALV MY+KCG +  S++VFN MP  ++++W  LI    
Sbjct: 336 KGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACG 395

Query: 338 QNGMPDKALEYFELLLKSG-----TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
            +G  ++ALE F+ ++         +P+ + F+ V  AC+H+GL+ +GL  F+ +K  HG
Sbjct: 396 MHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHG 455

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRA 451
           +  T+DHYAC+VDLL R+G+  EA ++++ MP + DK   W+SLLG CRIH N++L + A
Sbjct: 456 VEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVA 515

Query: 452 AEALFEIEPENPATYVTMANIYASA 476
           A+ L  +EP   + YV ++NIY+SA
Sbjct: 516 AKNLLHLEPNVASHYVLLSNIYSSA 540



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 190/382 (49%), Gaps = 35/382 (9%)

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P R   SW   +    R N   EA+  Y  M     +  + F   +VL AVS +Q L+ G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEM-TVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 179 KEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSI--------------------NEARQIF 217
           ++IH   ++ G+ S  V V + L +MYGKCG I                    ++++ +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           +  VDRD+VSW  MI  + Q  R  E  A F  ++  G+  +  T A VL AC+     +
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 278 LGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           +GK++H Y+ R       SF  SALV MY  C  VE+ ++VF+ +    +  W ++I+GY
Sbjct: 232 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 291

Query: 337 AQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHA-GLVDKGLQYFHSIKEKHGLT 394
           A+NG+ +KAL  F E++  +G  P+      V+ AC H+   + KG +  H+   ++ L 
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKG-KEIHAYAIRNMLA 350

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN----LDLAKR 450
                 + +VD+ A+ G  + +  V ++MP K +   W  L+  C +HG     L+L K 
Sbjct: 351 SDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGEEALELFKN 409

Query: 451 -AAEALF--EIEPENPATYVTM 469
             AEA    E +P N  T++T+
Sbjct: 410 MVAEAGRGGEAKP-NEVTFITV 430



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 99/215 (46%), Gaps = 33/215 (15%)

Query: 24  PSPSIYSSLIQFCRQN-RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+ +  +S++  C  +  A+ +GK++H++   +     + + + L+DMYAKCG ++ ++ 
Sbjct: 315 PNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRR 374

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+EM  ++V ++N +I      G  E+A  LF  M            +G     +P   
Sbjct: 375 VFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAE---------AGRGGEAKP--- 422

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR--TGFDSDEVVWSAL 200
                          N+ T  +V +A S    +  G  +  Y M+   G +     ++ +
Sbjct: 423 ---------------NEVTFITVFAACSHSGLISEGLNLF-YRMKHDHGVEPTSDHYACV 466

Query: 201 SDMYGKCGSINEARQIFDKMVDR--DVVSWTAMIG 233
            D+ G+ G + EA ++ + M      V +W++++G
Sbjct: 467 VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 501


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 245/439 (55%), Gaps = 34/439 (7%)

Query: 40  RALEEGKKVHSH-LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           + + EG+++H+  +K+      V++SN L+ +Y+ CG+I D Q                 
Sbjct: 124 QGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ----------------- 166

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
                          +FDE P RD  SWT +I  + +      A++ +  M +       
Sbjct: 167 --------------KVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADG 212

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMR-TGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + TL  VLSA S +  L LG+++H YI       +D  V +AL DMY KC  +N A ++F
Sbjct: 213 R-TLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVF 271

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D+M  ++VV+W AMI     +GR  E    F  +   G++P+  T  GVLN+CA+    E
Sbjct: 272 DEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE 331

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           +GK VH YM R       F  +AL+ MY+KCG+++ + +VF  M R D+ S+T++I G A
Sbjct: 332 IGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLA 391

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +G  + A + F  + + G +P+ + F+G+L AC+H GLV +G +YF  + +K+ L   A
Sbjct: 392 LHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQA 451

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           +HY C++DLL R+G   EAE++I KM ++PD F   +LLG CRIHGN+D+ +   + L E
Sbjct: 452 EHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE 511

Query: 458 IEPENPATYVTMANIYASA 476
           ++P+   TY+ M N+Y+S 
Sbjct: 512 LDPDEEGTYILMTNLYSSV 530



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 6/200 (3%)

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS-FAASALVHMY 305
             +E++  G+ P+ FT   VL A A       G+Q+H    + G   ++ + ++ L+ +Y
Sbjct: 97  FLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLY 156

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           S CG++ + +KVF+  P  DLVSWT+LI  + + G+  +A+E F  +     + D    V
Sbjct: 157 SVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLV 216

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKM 423
            VL+AC++ G ++ G Q  HS   +H +   AD +    ++D+  +    + A  V  +M
Sbjct: 217 VVLSACSNLGDLNLG-QKVHSYI-RHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEM 274

Query: 424 PMKPDKFLWASLLGGCRIHG 443
           P+K +   W +++ G    G
Sbjct: 275 PVK-NVVTWNAMISGLAYQG 293



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 109/297 (36%), Gaps = 79/297 (26%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L  Q R +EAL     +      P       ++  C     LE GK VH++++ +     
Sbjct: 289 LAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILAD 348

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            F+ N LLDMYAKCG+I +A  +F+ M+ RDV SY  MI G    G    A  +F EM  
Sbjct: 349 KFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEM-- 406

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                          +   IE                N+ T   +L A S    +  GK+
Sbjct: 407 ---------------FRVGIEP---------------NEVTFLGLLMACSHGGLVAEGKK 436

Query: 181 I-----HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
                   Y +R   +     +  + D+ G+ G + EA +I  KM               
Sbjct: 437 YFFQMSDKYKLRPQAEH----YGCMIDLLGRAGLVKEAEEIIHKM--------------- 477

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
                               IRP+ F    +L AC  H   ++G+ V   +T +  D
Sbjct: 478 -------------------EIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPD 515


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 263/459 (57%), Gaps = 6/459 (1%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P   ++   +  C  +  L+ G+++HS +  SG    + ISN L++MY KC ++  A+
Sbjct: 6   TRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAE 65

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +FD M  RDV S+  M++ + + G   QA ++F+ MP++D+ SW A+I+  V  ++  +
Sbjct: 66  KVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQD 125

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSAL 200
           AL+L+  M+  E   SN+FTL S+L A   ++ L+L ++IH      GF  +   V +++
Sbjct: 126 ALELFHGME-LEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSV 184

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ--EGRREEGFALFSELIKSGIRP 258
            +MY +CGS+ + ++ FD + ++ +V+W+ M+  Y Q  +G     F  F E+   GI+P
Sbjct: 185 VNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKP 244

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKV 317
              TF   L+ACA  A  E G+ +H      G+   S    + +++MY KCG+  ++K V
Sbjct: 245 GEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLV 304

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+ MP   L+SW SLI  YA NG   +AL   + +L  G  PD    V +L   +HAGL+
Sbjct: 305 FDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLL 364

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM-KPDKFLWASLL 436
           ++G+++F S  + HGL  ++    C+VDLLAR G    AE++I   P  + D   W +LL
Sbjct: 365 ERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLL 424

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             C+ +G+     R AE +FE+EP++  ++V +AN+YAS
Sbjct: 425 AACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYAS 463



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 154/321 (47%), Gaps = 37/321 (11%)

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
            +E +  +K      L A +A   L  G++IH  ++ +G  S+ ++ ++L +MYGKC  +
Sbjct: 2   QWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDV 61

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEG------------------------------- 239
             A ++FD M+ RDVVSWTAM+  Y Q G                               
Sbjct: 62  PCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNS 121

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-A 298
           + ++   LF  +   G+R N FT   +L AC      +L +Q+H      G+   S A  
Sbjct: 122 KFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVG 181

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ--NGMPDKALEYFELLLKSG 356
           +++V+MY++CG++ ++KK F+ +    LV+W+ ++A YAQ  +G   +A ++F+ +   G
Sbjct: 182 NSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEG 241

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARSGRFHE 415
            +P  + FV  L AC     ++ G +  H      G   T+      I+++  + G   +
Sbjct: 242 IKPGEVTFVSALDACAAMATLEHG-RSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSD 300

Query: 416 AEDVISKMPMKPDKFLWASLL 436
           A+ V  +MP K     W SL+
Sbjct: 301 AKLVFDQMPEKC-LISWNSLI 320


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 255/462 (55%), Gaps = 39/462 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+ S +   I+ C     +  GK+ H      G++  +F+S+ L+ MY+ CG       
Sbjct: 73  YPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK------ 126

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                    LE AR +FDE+P+R+  SWT+MI GY      ++A
Sbjct: 127 -------------------------LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDA 161

Query: 143 LDLYRMMQNFENS-----VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           + L++ +   EN        +   + SV+SA S +    L + IH ++++ GFD    V 
Sbjct: 162 VSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVG 221

Query: 198 SALSDMYGKCGS--INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + L D Y K G   +  AR+IFD++VD+D VS+ +++  Y Q G   E F +F  LIK  
Sbjct: 222 NTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEK 281

Query: 256 IRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           +   N  T + VL A +   A  +GK +H  + R+G +      ++++ MY KCG VE +
Sbjct: 282 VVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETA 341

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +  F+ M   ++ SWT++IAGY  +G   KALE F  ++ SG +P++I FV VL AC+HA
Sbjct: 342 RLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA 401

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GL D G  +F+++K + G+    +HY C+VDLL R+G   +A D+I KM M+PD  +W+S
Sbjct: 402 GLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSS 461

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LL  CRIH N++LA+ +   LFE++P N   Y+ +++IYA +
Sbjct: 462 LLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADS 503



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 185/375 (49%), Gaps = 19/375 (5%)

Query: 113 NLFDE-MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
            LF+  + + D FSW ++I+   R     EAL  +  M+   +    + +    + A S+
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKL-SLYPTRSSFPCAIKACSS 88

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           +  +  GK+ H      G+ SD  V SAL  MY  CG + +AR++FD++  R++VSWT+M
Sbjct: 89  LLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTF------AGVLNACADHAAEELGKQVHGY 285
           I  Y   G   +  +LF +L+      +A  F        V++AC+  AA+ L + +H +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSF 208

Query: 286 MTRIGYDPYSFAASALVHMYSKCGN--VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           + + G+D      + L+  Y+K G   V  ++K+F+ +   D VS+ S+++ YAQ+GM +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 344 KALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           +A + F  L+K      + I    VL A +H+G +  G +  H    + GL         
Sbjct: 269 EAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTS 327

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEP 460
           I+D+  + GR   A     +M  K  +  W +++ G  +HG+   A +A E LF   I+ 
Sbjct: 328 IIDMYCKCGRVETARLAFDRMKNKNVRS-WTAMIAGYGMHGH---AAKALE-LFPAMIDS 382

Query: 461 ENPATYVTMANIYAS 475
                Y+T  ++ A+
Sbjct: 383 GVRPNYITFVSVLAA 397


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 257/457 (56%), Gaps = 30/457 (6%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ S +   I+ C     L  GK+ H      GF+  +F+S+ L+DMY+KCG +S+A+ L
Sbjct: 80  PNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVL 139

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FDE+  R++ ++ ++I+G+ +     +A  +F E                          
Sbjct: 140 FDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEF------------------------- 174

Query: 144 DLYRMMQNFENSVS---NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            L+   +     V    +   + SVLSA S +    + + +HG  ++ G D    V + L
Sbjct: 175 -LFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTL 233

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPN 259
            D Y KCG ++ +R++FD M ++DVVSW +MI  Y Q G   + F +F  ++K+ G + N
Sbjct: 234 LDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYN 293

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T + +L ACA   A  +G  +H  + ++GY      A++++ MY KCG  E ++  F+
Sbjct: 294 EVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFD 353

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           GM   ++ SWT++IAGY  +G   +AL+ F  ++ +G +P++I F+ VL AC+HAG +++
Sbjct: 354 GMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEE 413

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G ++F+++  ++ +    +HY C+VDLL R+G   EA ++I  M ++ D  LW SLL  C
Sbjct: 414 GWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAAC 473

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           RIH +++LA+ +A  LF+++P N   YV +ANIYA A
Sbjct: 474 RIHKDVELAEISARELFKLDPSNCGYYVLLANIYADA 510



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 193/410 (47%), Gaps = 49/410 (11%)

Query: 78  SDAQTLFDEMQER-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           ++  TLF++  +R DV S+N++I+   +GG         D       FSW          
Sbjct: 32  TNLTTLFNKYFDRTDVYSWNSLIAELARGG---------DSCESLRAFSW---------- 72

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
              +  LD+            N+ T    + + SA+  L  GK+ H   +  GF+SD  V
Sbjct: 73  ---MRKLDIK----------PNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFV 119

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI---- 252
            SAL DMY KCG ++ AR +FD++  R++V+WT++I  Y Q     E   +F E +    
Sbjct: 120 SSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKS 179

Query: 253 -----KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
                + G   ++     VL+AC+  + + + + VHG   ++G D      + L+  Y+K
Sbjct: 180 EGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAK 239

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQPDHIVFVG 366
           CG V  S+KVF+ M   D+VSW S+IA YAQNG+   A E F  +LK+ G + + +    
Sbjct: 240 CGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLST 299

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC H G +  G+   H    K G          I+D+  + G+   A +    M  K
Sbjct: 300 LLLACAHEGALRVGM-CLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEK 358

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFE-IEPENPATYVTMANIYAS 475
             +  W +++ G  +HG    A+ A +  ++ I       Y+T  ++ A+
Sbjct: 359 NVRS-WTAMIAGYGMHG---FAREALDVFYQMIWAGVKPNYITFISVLAA 404


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 258/471 (54%), Gaps = 33/471 (7%)

Query: 6   CNQRRLKEALQILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           C+Q   +   Q+L +   H +  + ++++        L  G +VH  +   G    V + 
Sbjct: 199 CSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVE 258

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+ MYAK G +  A  +F+  +ER+  +++ MI+G+++ G+ E A  +F +M      
Sbjct: 259 NSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQM------ 312

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                 +G+     P E                  FTL  VL+A S +  L  GK+ HG 
Sbjct: 313 ----HAAGF----PPTE------------------FTLVGVLNACSDVGTLMEGKQAHGL 346

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           +++ GF+    V SAL DMY KCG I +A++ F++  + D+V WTAM+  + Q G  E+ 
Sbjct: 347 MVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQA 406

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             L++ + K G+ PN  T   +L ACA  AA E GKQ+H  + + G+   +   SAL  M
Sbjct: 407 LMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTM 466

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YSKCGN+E+   VF  MP  D+++W S+I+G++QNG  + A+  FE +   GT PD + F
Sbjct: 467 YSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTF 526

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           + VL AC+H GLVD+G  YF S+ + +GLT   DHYAC+VD+L+R+G   EA+D I  + 
Sbjct: 527 INVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESIT 586

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +     LW  +LG CR   + D+   A E L ++   + A Y+ ++NIYA+
Sbjct: 587 IDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYAA 637



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 203/410 (49%), Gaps = 34/410 (8%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           VF+S  LL+MY K G I DAQ +F                               DEMP 
Sbjct: 153 VFVSTALLNMYCKLGLIPDAQLVF-------------------------------DEMPH 181

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R+  SW AM++GY       EA +L+R M        N+F  ++VLSA+S    L +G +
Sbjct: 182 RNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQ 241

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +HG +++ G      V ++L  MY K G ++ A  +F+   +R+ ++W+AMI  Y Q G 
Sbjct: 242 VHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGN 301

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E    +FS++  +G  P  FT  GVLNAC+D      GKQ HG M ++G++   +  SA
Sbjct: 302 AESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSA 361

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY+KCG + ++K+ FN     D+V WT+++ G+ QNG  ++AL  +  + K G  P+
Sbjct: 362 LVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPN 421

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            +    +L AC     ++ G Q  H+   K G    A   + +  + ++ G   +   V 
Sbjct: 422 TLTITSLLRACAGLAALEPGKQ-LHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVF 480

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL-FEIEPENPATYVTM 469
            +MP + D   W S++ G   +G  + A    E +  E    +P T++ +
Sbjct: 481 RRMPHR-DVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINV 529



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 14/284 (4%)

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI--NEARQIFDKM--VDRDVVSWTAM 231
           R G+ +H + +++G  S   V ++L   Y     +    A  +F  +    RDV SW ++
Sbjct: 29  RDGEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSL 88

Query: 232 IGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI- 289
           +       R     + F  ++ S  I P+  +FA    A A   +   G  VH    ++ 
Sbjct: 89  LNP-LSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLP 147

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                 F ++AL++MY K G + +++ VF+ MP  + VSW +++AGYA      +A E F
Sbjct: 148 SASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELF 207

Query: 350 ELLLKSGTQPDH---IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             +L  G  P H    V   VL+A +    +  G+Q  H +  K G+         +V +
Sbjct: 208 RQML--GECPLHKNEFVATAVLSAISVPLGLPMGVQ-VHGLVVKDGMVGFVSVENSLVTM 264

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
            A++G    A  V      + +   W++++ G   +GN + A R
Sbjct: 265 YAKAGCMDAAFHVFESSKER-NSITWSAMITGYSQNGNAESAVR 307


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 269/473 (56%), Gaps = 35/473 (7%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N++ LK   Q+  +   P+P  +++++     + A+E+G +VH+ +  SG    +F+ N 
Sbjct: 174 NEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +++MY+K   +SDA+ +                               FD M  R+  SW
Sbjct: 234 MVNMYSKSLMVSDAKAV-------------------------------FDSMENRNAVSW 262

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            +MI+G+V     +EA +L+  M+  E     +   ++V+   + I+ +   K++H  ++
Sbjct: 263 NSMIAGFVTNGLDLEAFELFYRMR-LEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVI 321

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGF 245
           + G D D  + +AL   Y KC  I++A ++F  M   ++VVSWTA+I  Y Q GR +   
Sbjct: 322 KNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAM 381

Query: 246 ALFSELIKS-GIRPNAFTFAGVLNACADHAAE-ELGKQVHGYMTRIGYDPYSFAASALVH 303
            LF ++ +  G+ PN FTF+ VLNACA   A  E GKQ H    + G+      +SALV 
Sbjct: 382 NLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVT 441

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+K GN+E++ +VF      DLVSW S+I+GYAQ+G   K+L+ FE +     + D I 
Sbjct: 442 MYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGIT 501

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+GV++ACTHAGLV++G +YF  + + + +  T +HY+C+VDL +R+G   +A D+I+KM
Sbjct: 502 FIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKM 561

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P      +W +LL  CR+H N+ L + AAE L  ++P++ A YV ++NIYA+A
Sbjct: 562 PFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATA 614



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 223/460 (48%), Gaps = 48/460 (10%)

Query: 12  KEALQILHQISHP-SPSIYSSL-----IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           KEAL +   +    SP+  SSL     +  C  +R +  GK+VH      GF   V +  
Sbjct: 74  KEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIV--GKQVHCQCIKCGFVEDVSVGT 131

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMY K  ++ D + +FDEM+ ++V S+ ++++G+ + G  EQA  LF +M       
Sbjct: 132 SLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQM------- 184

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                      E    N FT ++VL  ++A   +  G ++H  +
Sbjct: 185 -------------------------QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMV 219

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +++G DS   V +++ +MY K   +++A+ +FD M +R+ VSW +MI  +   G   E F
Sbjct: 220 IKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAF 279

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF  +   G++     FA V+  CA+       KQ+H  + + G D      +AL+  Y
Sbjct: 280 ELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAY 339

Query: 306 SKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIV 363
           SKC  ++++ K+F  M    ++VSWT++I+GY QNG  D+A+  F ++  + G +P+   
Sbjct: 340 SKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFT 399

Query: 364 FVGVLTACTH-AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
           F  VL AC      V++G Q FHS   K G +      + +V + A+ G    A +V  K
Sbjct: 400 FSSVLNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVF-K 457

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
             +  D   W S++ G   HG     K++ +   E+  +N
Sbjct: 458 RQVDRDLVSWNSMISGYAQHG---CGKKSLKIFEEMRSKN 494



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 180/365 (49%), Gaps = 36/365 (9%)

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
            ++ LFDE PQ+       ++  + R +Q  EAL+L+  ++    S ++  +LS VL   
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRR-SGSPTDGSSLSCVLKVC 102

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
             +    +GK++H   ++ GF  D  V ++L DMY K  S+ +  ++FD+M  ++VVSWT
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           +++  Y Q G  E+   LFS++   GI+PN FTFA VL   A   A E G QVH  + + 
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G D   F  +++V+MYSK   V ++K VF+ M   + VSW S+IAG+  NG+  +A E F
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 350 ELLLKSGTQPDHIVFVGVLTACT-----------HAGLVDKGLQYFHSIKEKHGLTYT-- 396
             +   G +    +F  V+  C            H  ++  G  +  +IK    + Y+  
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 397 ------------------ADHYACIVDLLARSGRFHEAEDVISKMP----MKPDKFLWAS 434
                                +  I+    ++GR   A ++  +M     ++P++F ++S
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSS 402

Query: 435 LLGGC 439
           +L  C
Sbjct: 403 VLNAC 407


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 255/460 (55%), Gaps = 32/460 (6%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +++++   P+    SS+++ C+  + L  G+ VH      G    +++ N L+DMYA C 
Sbjct: 83  EMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC- 141

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                            C             S++ A  +F  +  ++  SWT +I+GY  
Sbjct: 142 -----------------CV------------SMDDACMVFRGIHLKNEVSWTTLIAGYTH 172

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            +     L ++R M   E    N F+ S  + A ++I     G+++H  + + GF+S+  
Sbjct: 173 RDDGYGGLRVFRQML-LEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLP 231

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +++ DMY +C   +EA + F +M  RD+++W  +I  Y +     E   +FS +   G
Sbjct: 232 VMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEG 290

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
             PN FTF  ++ ACA  A    G+Q+HG + R G D     ++AL+ MYSKCGN+ +S 
Sbjct: 291 FSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSH 350

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           +VF GM R DLVSWT+++ GY  +G  ++A+E F+ +++SG +PD +VF+ +L+AC+HAG
Sbjct: 351 QVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAG 410

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LVD+GL+YF  +   + ++   + Y C+VDLL R+G+  EA ++I  MP KPD+ +W   
Sbjct: 411 LVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPF 470

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LG C+ H   +L K AA  + ++ P    TYV ++NIYA+
Sbjct: 471 LGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAA 510



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 155/316 (49%), Gaps = 5/316 (1%)

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI+GY   N    A  ++  M N E    N FT+SSVL A   ++CL  G+ +HG  ++ 
Sbjct: 64  MIAGYTSCNNHTHAWMVFCEMMN-EELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKH 122

Query: 189 GFDSDEVVWSALSDMYGKCG-SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           G D    V +AL DMY  C  S+++A  +F  +  ++ VSWT +I  Y        G  +
Sbjct: 123 GLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRV 182

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F +++   +  N F+F+  + AC    +   G+Q+H  +T+ G++      ++++ MY +
Sbjct: 183 FRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCR 242

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           C     + + F  M + DL++W +LIAGY ++  P ++L  F ++   G  P+   F  +
Sbjct: 243 CSCFSEANRYFYEMNQRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSI 301

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           + AC     ++ G Q  H    + GL         ++D+ ++ G   ++  V   M  + 
Sbjct: 302 MAACATLAFLNCG-QQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRR- 359

Query: 428 DKFLWASLLGGCRIHG 443
           D   W +++ G   HG
Sbjct: 360 DLVSWTAMMIGYGTHG 375



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 3/227 (1%)

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A  +      + ++    MI  Y         + +F E++   + PNAFT + VL AC  
Sbjct: 46  ATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKG 105

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG-NVENSKKVFNGMPRPDLVSWTS 331
                 G+ VHG   + G D + +  +AL+ MY+ C  +++++  VF G+   + VSWT+
Sbjct: 106 MKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTT 165

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           LIAGY         L  F  +L    + +   F   + ACT  G    G Q  H+   KH
Sbjct: 166 LIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQ-LHAAVTKH 224

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           G          I+D+  R   F EA     +M  + D   W +L+ G
Sbjct: 225 GFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQR-DLITWNTLIAG 270


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/410 (36%), Positives = 244/410 (59%), Gaps = 2/410 (0%)

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY+K G++  A  L++ M++++  S N +I+G+ + G L  AR +FDEMP R   +W 
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AMI+G +++    E L L+R M     S  +++TL SV S  + ++ + +G++IHGY ++
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYAIK 119

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G + D VV S+L+ MY + G + +   +   M  R++V+W  +I    Q G  E    L
Sbjct: 120 YGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYL 179

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           +  +  SG RPN  TF  VL++C+D A    G+Q+H    +IG        S+L+ MYSK
Sbjct: 180 YKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSK 239

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVG 366
           CG + ++ K F+     D V W+S+I+ Y  +G  D+A++ F  +  ++  + + + F+ 
Sbjct: 240 CGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLN 299

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC+H+GL DKGL+ F  + EK+G      HY C+VDLL R+G   +AE +I  MP+K
Sbjct: 300 LLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIK 359

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LL  C IH N ++A++  + + EI+P + A YV +AN++ASA
Sbjct: 360 PDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASA 409



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 147/318 (46%), Gaps = 35/318 (11%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           R++  G+++H +    G +  + +++ L  MY + G + D + +   M  R++ ++NT+I
Sbjct: 105 RSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
            G  + G                                P   L LY+MM+       NK
Sbjct: 165 MGNAQNGC-------------------------------PETVLYLYKMMK-ISGCRPNK 192

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T  +VLS+ S +     G++IH   ++ G  S   V S+L  MY KCG + +A + F +
Sbjct: 193 ITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE 252

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEEL 278
             D D V W++MI  Y   G+ +E   LF+ +  ++ +  N   F  +L AC+    ++ 
Sbjct: 253 REDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDK 312

Query: 279 GKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGY 336
           G ++   M  + G+ P     + +V +  + G ++ ++ +   MP +PD V W +L++  
Sbjct: 313 GLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSAC 372

Query: 337 AQNGMPDKALEYFELLLK 354
             +   + A + F+ +L+
Sbjct: 373 NIHKNAEMAQKVFKEILE 390



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 35/238 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + +++  C       +G+++H+     G    V + + L+ MY+KCG + DA   
Sbjct: 190 PNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKA 249

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F E ++ D   +++MIS +   G  ++A  LF+ M ++                      
Sbjct: 250 FSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEME------------------ 291

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSD 202
                         N+    ++L A S       G E+   ++ + GF      ++ + D
Sbjct: 292 -------------VNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVD 338

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           + G+ G +++A  I   M +  D V W  ++         E    +F E+++  I PN
Sbjct: 339 LLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILE--IDPN 394


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 256/457 (56%), Gaps = 34/457 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+   +S+ ++ C    ALE+G ++H      GF+  V + N L+DMY+KCG I+    
Sbjct: 104 YPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN---- 159

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                      +A  +F  +  R   SW AMI+G+V      +A
Sbjct: 160 ---------------------------EAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKA 192

Query: 143 LDLYRMMQNFE-NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD--SDEVVWSA 199
           LD + MMQ        ++FTL+S+L A S+   +  GK+IHG+++R+GF   S   +  +
Sbjct: 193 LDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGS 252

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L D+Y KCG +  AR+ FD++ ++ ++SW+++I  Y QEG   E   LF  L +   + +
Sbjct: 253 LVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQID 312

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           +F  + ++   AD A    GKQ+     ++     +   +++V MY KCG V+ ++K F 
Sbjct: 313 SFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFA 372

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D++SWT +I GY ++G+  K++  F  +L+   +PD + ++ VL+AC+H+G++ +
Sbjct: 373 EMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKE 432

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G + F  + E HG+    +HYAC+VDLL R+GR  EA+ +I  MP+KP+  +W +LL  C
Sbjct: 433 GEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLC 492

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           R+HG+++L K   + L  I+ +NPA YV M+N+Y  A
Sbjct: 493 RVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQA 529



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 218/441 (49%), Gaps = 48/441 (10%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S+++ C +    ++G +VH +L  SG    +  SN L+DMY KC     A  +FD M ER
Sbjct: 11  SILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPER 70

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +V S++ ++SG    G L+ + +LF EM ++  +                          
Sbjct: 71  NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIY-------------------------- 104

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                  N+FT S+ L A   +  L  G +IHG+ ++ GF+    V ++L DMY KCG I
Sbjct: 105 ------PNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 158

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI--RPNAFTFAGVLN 268
           NEA ++F ++VDR ++SW AMI  +   G   +    F  + ++ I  RP+ FT   +L 
Sbjct: 159 NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLK 218

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFA--ASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           AC+       GKQ+HG++ R G+   S A    +LV +Y KCG + +++K F+ +    +
Sbjct: 219 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTM 278

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY-FH 385
           +SW+SLI GYAQ G   +A+  F+ L +  +Q D      ++       L+ +G Q    
Sbjct: 279 ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQAL 338

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           ++K   GL  +      +VD+  + G   EAE   ++M +K D   W  ++ G   HG  
Sbjct: 339 AVKLPSGLETSV--LNSVVDMYLKCGLVDEAEKCFAEMQLK-DVISWTVVITGYGKHG-- 393

Query: 446 DLAKRAAEALFE-----IEPE 461
            L K++    +E     IEP+
Sbjct: 394 -LGKKSVRIFYEMLRHNIEPD 413


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/452 (34%), Positives = 253/452 (55%), Gaps = 32/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     SS+++ C   R L   K +++++  +GF     + N L+D+YAKCG+       
Sbjct: 305 PDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD------- 357

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                         MI+          AR++F+ M  +D  SW ++ISGY++    +EA+
Sbjct: 358 --------------MIT----------ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L++MM   E   ++  T   ++S  + +  L+ GK +H   +++G   D  V +AL DM
Sbjct: 394 KLFKMMMIMEEQ-ADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDM 452

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG + ++ +IF  M   D V+W  +I    + G    G  + +++ KS + P+  TF
Sbjct: 453 YAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATF 512

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L  CA  AA+ LGK++H  + R GY+      +AL+ MYSKCG +ENS +VF  M R
Sbjct: 513 LVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSR 572

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V+WT +I  Y   G  +KALE F  + KSG  PD +VF+ ++ AC+H+GLVD+GL  
Sbjct: 573 RDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLAC 632

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +K  + +    +HYAC+VDLL+RS +  +AE+ I  MP+KPD  +WAS+L  CR  G
Sbjct: 633 FEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSG 692

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +++ A+R +  + E+ P++P   +  +N YA+
Sbjct: 693 DMETAERVSRRIIELNPDDPGYSILASNAYAA 724



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 241/477 (50%), Gaps = 15/477 (3%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           ID   + R    +L +  ++S P+ ++Y  +S+I+   +N    E  + +  L+ S   P
Sbjct: 46  IDKYSHFREPASSLSVFRRVS-PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSP 104

Query: 60  GVF-----ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
             +     I  C     A+ G++   Q L D   E D+   N ++  +++ G L +AR +
Sbjct: 105 DKYTFPSVIKACAGLFDAEMGDLVYEQIL-DMGFESDLFVGNALVDMYSRMGLLTRARQV 163

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           FDEMP RD  SW ++ISGY  +    EAL++Y  ++N    V + FT+SSVL A   +  
Sbjct: 164 FDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKN-SWIVPDSFTVSSVLPAFGNLLV 222

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           ++ G+ +HG+ +++G +S  VV + L  MY K     +AR++FD+M  RD VS+  MI  
Sbjct: 223 VKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICG 282

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Y +    EE   +F E +    +P+  T + VL AC       L K ++ YM + G+   
Sbjct: 283 YLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLE 341

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           S   + L+ +Y+KCG++  ++ VFN M   D VSW S+I+GY Q+G   +A++ F++++ 
Sbjct: 342 STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMI 401

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
              Q DHI ++ +++  T    +  G +  HS   K G+         ++D+ A+ G   
Sbjct: 402 MEEQADHITYLMLISVSTRLADLKFG-KGLHSNGIKSGICIDLSVSNALIDMYAKCGEVG 460

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL--FEIEPENPATYVTM 469
           ++  + S M    D   W +++  C   G+     +    +   E+ P+     VT+
Sbjct: 461 DSLKIFSSMG-TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTL 516



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 214/470 (45%), Gaps = 46/470 (9%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL+I H++ +    P     SS++        +++G+ +H     SG    V ++N L
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGL 248

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY K    +DA+ +FDEM  RD  SYNTMI G+ K   +E++  +F            
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF------------ 296

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                ++N +    +  T+SSVL A   ++ L L K I+ Y+++
Sbjct: 297 ---------------------LENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLK 335

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF  +  V + L D+Y KCG +  AR +F+ M  +D VSW ++I  Y Q G   E   L
Sbjct: 336 AGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKL 395

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  ++    + +  T+  +++     A  + GK +H    + G       ++AL+ MY+K
Sbjct: 396 FKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAK 455

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG V +S K+F+ M   D V+W ++I+   + G     L+    + KS   PD   F+  
Sbjct: 456 CGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT 515

Query: 368 LTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           L  C  A L  K L +  H    + G          ++++ ++ G    +  V  +M  +
Sbjct: 516 LPMC--ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRR 573

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYA 474
            D   W  ++    ++G     ++A E   ++E     P + V +A IYA
Sbjct: 574 -DVVTWTGMIYAYGMYGE---GEKALETFADMEKSGIVPDSVVFIAIIYA 619



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 212/435 (48%), Gaps = 41/435 (9%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-RDVCSYNTMIS 100
           L E +++H+ + S G     F S  L+D Y+     + + ++F  +   ++V  +N++I 
Sbjct: 20  LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIR 79

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NK 159
            F+K G       LF E                        AL+ Y  ++  E+ VS +K
Sbjct: 80  AFSKNG-------LFPE------------------------ALEFYGKLR--ESKVSPDK 106

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
           +T  SV+ A + +    +G  ++  I+  GF+SD  V +AL DMY + G +  ARQ+FD+
Sbjct: 107 YTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDE 166

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M  RD+VSW ++I  Y   G  EE   ++ EL  S I P++FT + VL A  +    + G
Sbjct: 167 MPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           + +HG+  + G +      + LV MY K     ++++VF+ M   D VS+ ++I GY + 
Sbjct: 227 QGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKL 286

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTAD 398
            M ++++  F   L    +PD +    VL AC H  L D  L +Y ++   K G    + 
Sbjct: 287 EMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGH--LRDLSLAKYIYNYMLKAGFVLEST 343

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
               ++D+ A+ G    A DV + M  K D   W S++ G    G+L  A +  + +  +
Sbjct: 344 VRNILIDVYAKCGDMITARDVFNSMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIM 402

Query: 459 EPE-NPATYVTMANI 472
           E + +  TY+ + ++
Sbjct: 403 EEQADHITYLMLISV 417



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 135/276 (48%), Gaps = 6/276 (2%)

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            +  VS+ F +S  LS+ S +  LR    IH  ++  G DS +     L D Y       
Sbjct: 1   MQTRVSSPF-ISRALSSSSNLNELR---RIHALVISLGLDSSDFFSGKLIDKYSHFREPA 56

Query: 212 EARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +  +F ++   ++V  W ++I  + + G   E    + +L +S + P+ +TF  V+ AC
Sbjct: 57  SSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKAC 116

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A     E+G  V+  +  +G++   F  +ALV MYS+ G +  +++VF+ MP  DLVSW 
Sbjct: 117 AGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWN 176

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           SLI+GY+ +G  ++ALE +  L  S   PD      VL A  +  +V +G Q  H    K
Sbjct: 177 SLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG-QGLHGFALK 235

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            G+         +V +  +  R  +A  V  +M ++
Sbjct: 236 SGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVR 271


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/470 (35%), Positives = 272/470 (57%), Gaps = 5/470 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L +A ++ + +       ++ LI    QN   +E   + + + S+G KP        L  
Sbjct: 297 LFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPS 356

Query: 71  YAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
             + G++   + +   +       DV   + +I  + KGG +E AR +F +    D    
Sbjct: 357 ILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVC 416

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAMISGYV +   I+A++ +R +   E  V N  T++SVL A +A+  L+LGKE+H  I+
Sbjct: 417 TAMISGYVLHGLNIDAINTFRWLIQ-EGMVPNSLTMASVLPACAALAALKLGKELHCDIL 475

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +   ++   V SA++DMY KCG ++ A + F +M + D + W +MI  + Q G+ E    
Sbjct: 476 KKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVD 535

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++  SG + ++ + +  L++ A+  A   GK++HGY+ R  +   +F ASAL+ MYS
Sbjct: 536 LFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYS 595

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  ++ VFN M   + VSW S+IA Y  +G   + L+ F  +L++G  PDH+ F+ 
Sbjct: 596 KCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLV 655

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +++AC HAGLV +G+ YFH +  ++G+    +HYAC+VDL  R+GR HEA D I  MP  
Sbjct: 656 IISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFT 715

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LLG CR+HGN++LAK A+  L E++P+N   YV ++N++A A
Sbjct: 716 PDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADA 765



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 192/417 (46%), Gaps = 35/417 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL + C     +++ ++VH+ +   G      +S+ +L +Y  CG ISD   LF  ++  
Sbjct: 49  SLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELC 108

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +   +N MI G    G  + A                               L  ++M+ 
Sbjct: 109 NALPWNWMIRGLYMLGWFDFA------------------------------LLFYFKMLG 138

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +  N   +K+T   V+ A   +  + L   +H      GF  D  V SAL  +Y   G I
Sbjct: 139 S--NVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYI 196

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +AR++FD++  RD + W  M+  Y + G        F  +  S    N+ T+  +L+ C
Sbjct: 197 CDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSIC 256

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A      LG QVHG +   G++     A+ LV MYSKCGN+ +++K+FN MP+ D V+W 
Sbjct: 257 ATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWN 316

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            LIAGY QNG  D+A   F  ++ +G +PD + F   L +   +G + +  +  HS   +
Sbjct: 317 GLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSL-RHCKEVHSYIVR 375

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG-NLD 446
           H + +     + ++D+  + G    A  +  +  +  D  +  +++ G  +HG N+D
Sbjct: 376 HRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLV-DVAVCTAMISGYVLHGLNID 431



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 205/421 (48%), Gaps = 46/421 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+ ++  C        G +VH  +  SGF+    ++N L+ MY+KCGN+ DA+ LF+ M 
Sbjct: 249 YTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMP 308

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + D  ++N +I+G+ + G  ++A  LF+           AMIS  V+             
Sbjct: 309 QTDTVTWNGLIAGYVQNGFTDEAAPLFN-----------AMISAGVK------------- 344

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    +  T +S L ++     LR  KE+H YI+R     D  + SAL D+Y K G
Sbjct: 345 --------PDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGG 396

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  AR+IF +    DV   TAMI  Y   G   +    F  LI+ G+ PN+ T A VL 
Sbjct: 397 DVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLP 456

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA  AA +LGK++H  + +   +      SA+  MY+KCG ++ + + F  M   D + 
Sbjct: 457 ACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSIC 516

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W S+I+ ++QNG P+ A++ F  +  SG + D +     L++  +   +  G       K
Sbjct: 517 WNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYG-------K 569

Query: 389 EKHGLT----YTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           E HG      +++D +  + ++D+ ++ G+   A  V + M  K ++  W S++     H
Sbjct: 570 EMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGK-NEVSWNSIIAAYGNH 628

Query: 443 G 443
           G
Sbjct: 629 G 629



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 141/316 (44%), Gaps = 8/316 (2%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L S+  A S    ++  +++H  I+  G      + S +  +Y  CG I++   +F  + 
Sbjct: 47  LESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLE 106

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
             + + W  MI   +  G  +     + +++ S + P+ +TF  V+ AC       L   
Sbjct: 107 LCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMV 166

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH     +G+    F  SAL+ +Y+  G + ++++VF+ +P+ D + W  ++ GY ++G 
Sbjct: 167 VHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGD 226

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            + A+  F  +  S +  + + +  +L+ C   G    G Q  H +    G  +      
Sbjct: 227 FNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQ-VHGLVIGSGFEFDPQVAN 285

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IE 459
            +V + ++ G   +A  + + MP + D   W  L+ G   +G  D A     A+    ++
Sbjct: 286 TLVAMYSKCGNLFDARKLFNTMP-QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 344

Query: 460 PENPATYVTMANIYAS 475
           P++    VT A+   S
Sbjct: 345 PDS----VTFASFLPS 356


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 255/460 (55%), Gaps = 32/460 (6%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +++++   P+    SS+++ C+  + L  G+ VH      G    +++ N L+DMYA C 
Sbjct: 99  EMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC- 157

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                            C             S++ A  +F  +  ++  SWT +I+GY  
Sbjct: 158 -----------------CV------------SMDDACMVFRGIHLKNEVSWTTLIAGYTH 188

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            +     L ++R M   E    N F+ S  + A ++I     G+++H  + + GF+S+  
Sbjct: 189 RDDGYGGLRVFRQML-LEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLP 247

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +++ DMY +C   +EA + F +M  RD+++W  +I  Y +     E   +FS +   G
Sbjct: 248 VMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEG 306

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
             PN FTF  ++ ACA  A    G+Q+HG + R G D     ++AL+ MYSKCGN+ +S 
Sbjct: 307 FSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSH 366

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           +VF GM R DLVSWT+++ GY  +G  ++A+E F+ +++SG +PD +VF+ +L+AC+HAG
Sbjct: 367 QVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAG 426

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LVD+GL+YF  +   + ++   + Y C+VDLL R+G+  EA ++I  MP KPD+ +W   
Sbjct: 427 LVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPF 486

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LG C+ H   +L K AA  + ++ P    TYV ++NIYA+
Sbjct: 487 LGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAA 526



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 176/349 (50%), Gaps = 5/349 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            T+I  +   G + +AR LFDEMP+RD  +WT MI+GY   N    A  ++  M N E  
Sbjct: 47  TTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMN-EEL 105

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG-SINEAR 214
             N FT+SSVL A   ++CL  G+ +HG  ++ G D    V +AL DMY  C  S+++A 
Sbjct: 106 DPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDAC 165

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            +F  +  ++ VSWT +I  Y        G  +F +++   +  N F+F+  + AC    
Sbjct: 166 MVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 225

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           +   G+Q+H  +T+ G++      ++++ MY +C     + + F  M + DL++W +LIA
Sbjct: 226 SHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIA 285

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GY ++  P ++L  F ++   G  P+   F  ++ AC     ++ G Q  H    + GL 
Sbjct: 286 GYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCG-QQIHGRIIRRGLD 343

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                   ++D+ ++ G   ++  V   M  + D   W +++ G   HG
Sbjct: 344 GNLALSNALIDMYSKCGNIADSHQVFGGMSRR-DLVSWTAMMIGYGTHG 391



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           S  A+ L+  Y   G +  ++ +F+ MP  D+V+WT +IAGY        A   F  ++ 
Sbjct: 43  SVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMN 102

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
               P+      VL AC     +  G +  H +  KHGL
Sbjct: 103 EELDPNAFTISSVLKACKGMKCLSYG-RLVHGLAIKHGL 140


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 258/458 (56%), Gaps = 42/458 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV----FISNCLLDMYAKCGNISD 79
           P+    SS++  CR   A  +G    S L +   + GV    ++ N L++ YA C     
Sbjct: 67  PNEFTLSSVLTACRGGAA--DGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASC----- 119

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQ 138
                                   +G  +E++R LFD +   R   SWT+M++GY R+ Q
Sbjct: 120 -----------------------EEGVGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQ 156

Query: 139 PIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
               L L++ M   ++ +  + FT S  L A ++I  L +G+++H   +R  F+++  V 
Sbjct: 157 EQTGLQLFQTM--IQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFNANLTVA 214

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           ++L DMY  C ++ +AR++FD++ +R++V+W  MI  ++ +        L  E+    ++
Sbjct: 215 NSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIA-WYSQCNHLMALQLLREM---NLQ 270

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           PN FT   + +ACA  A+   G+QVHG   R  Y       +ALV MYSKCG++ N+KK+
Sbjct: 271 PNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKM 330

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           FN M   D +SWTS+I GY  NG  +++++ F  ++ +G  PDH+VF+G++ AC H GLV
Sbjct: 331 FNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLV 390

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           D+G  +F S+  ++ L    + Y C+ +LLAR+GR  EA D+I +MP  PD+ +W +LLG
Sbjct: 391 DEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGALLG 450

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            C++H N++L + AA  + EI P+   TYV +ANIYA+
Sbjct: 451 ACKMHKNVELGRLAARKIIEINPDRAKTYVLLANIYAA 488



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 181/360 (50%), Gaps = 25/360 (6%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            T+I     GG+L  AR +FDEMP RD  +WTAM+SGY        ALDL+R M      
Sbjct: 7   TTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLA-AGV 65

Query: 156 VSNKFTLSSVLSAV--SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG---SI 210
             N+FTLSSVL+A    A         +H   +R G D    V +AL + Y  C     +
Sbjct: 66  GPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGV 125

Query: 211 NEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
            E+R++FD +   R   SWT+M+  Y + G+ + G  LF  +I+ GI  + FT +  L+A
Sbjct: 126 EESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHA 185

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA  A   +G+Q+H    R  ++     A++L+ MY  C N+ +++++F+ +P  +LV+W
Sbjct: 186 CASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTW 245

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            ++IA Y+Q       L   +LL +   QP+      + +AC        GL      ++
Sbjct: 246 NTMIAWYSQC----NHLMALQLLREMNLQPNCFTLTSITSACA-------GLASLRFGQQ 294

Query: 390 KHGL----TYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            HG      Y  D   C  +VD+ ++ G    A+ + + M  K DK  W S++ G  ++G
Sbjct: 295 VHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYK-DKLSWTSMITGYGMNG 353



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 8/192 (4%)

Query: 14  ALQILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
           ALQ+L +++  P+    +S+   C    +L  G++VH       +   + + N L+DMY+
Sbjct: 260 ALQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYS 319

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTA 128
           KCG+I++A+ +F+ M  +D  S+ +MI+G+   G   ++  LF  M       D+  +  
Sbjct: 320 KCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLG 379

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I          E  + +R M +  N   NK     V + ++    LR   E    I R 
Sbjct: 380 LICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLR---EAFDLIHRM 436

Query: 189 GFDSDEVVWSAL 200
            F  DE VW AL
Sbjct: 437 PFAPDETVWGAL 448



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+ L+      G + +++ VF+ MP  D+V+WT++++GYA NG    AL+ F  +L +G 
Sbjct: 6   ATTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGV 65

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQ--YFHSIKEKHGLTYTADHYACIVDLL 407
            P+      VLTAC   G  D G +    H++  + G+    DH   +V+ L
Sbjct: 66  GPNEFTLSSVLTAC-RGGAADGGCEPSSLHAVAVRRGV----DHMPYVVNAL 112


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/463 (35%), Positives = 255/463 (55%), Gaps = 51/463 (11%)

Query: 63  ISNCLLDMYAKCGN---------ISDAQTLFDEMQERDVC--SYNTMISGFTKGGSLEQA 111
           ++N LL  Y  C +         ++ A+ +FDE  +  +   S+ TMI+G+ +   L  A
Sbjct: 177 VTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAA 236

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
           R L D +    + +W AMISGYVR     EA D +R M +      +++T +S++SA  +
Sbjct: 237 RELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSM-GIQEDEYTYTSLISACGS 295

Query: 172 ----IQCLRLGKEIHGYIMRTG-------------------------------FDS---- 192
               +     G+++HGYI+RT                                FD     
Sbjct: 296 CNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR 355

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D + W+A+   Y     I EA  IF +M +R+V++WT MI    Q G  EEG  LF+++ 
Sbjct: 356 DIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMK 415

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
             G+ P  + FAG + AC+   + + G+Q+H  + R+G+D    A +AL+ MYS+CG VE
Sbjct: 416 SEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVE 475

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
           +++ VF  MP  D VSW ++IA  AQ+G   KA+E FE ++K    PD I F+ +LTAC 
Sbjct: 476 SAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           HAGL+ +G  YF ++  ++G+T   DHYA ++DLL R+G F +A+ VI  MP +    +W
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIW 595

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +LL GCRIHGN++L  +AA+ L E+ P    TY+ ++N+YA+
Sbjct: 596 EALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAA 638



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 224/486 (46%), Gaps = 91/486 (18%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
            + VH+H+ +SGFKP  FI N L+++Y K  NI+ A+ LFD++ + D+ +  T++S ++ 
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 105 GGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
            G+++ A+ LF+  P   RD  S+ AMI+ Y   N    AL+L+  M+ +   + + FT 
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRY-GFLPDPFTF 142

Query: 163 SSVLSAVSAI------------QCLRLGKEIHGYIM------------------------ 186
           SSVLSA+S I            + ++LG  +   +                         
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 187 -RTGFDSD------EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
            R  FD        E  W+ +   Y +   +  AR++ D +     V+W AMI  Y + G
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE----ELGKQVHGYMTRIGYDP-Y 294
             EE F  F  +   GI+ + +T+  +++AC     +      G+QVHGY+ R   +P +
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSH 322

Query: 295 SFAAS---ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY--------------- 336
            F  S   AL+  Y+K   +  +++VF+ MP  D++SW ++++GY               
Sbjct: 323 HFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSE 382

Query: 337 ----------------AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
                           AQNG  ++ L+ F  +   G +P    F G +TAC+  G +D G
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG 442

Query: 381 LQYFHS--IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            Q  HS  I+  H    +A +   ++ + +R G    AE V   MP   D   W +++  
Sbjct: 443 -QQIHSQVIRLGHDSGLSAGN--ALITMYSRCGVVESAESVFLTMPYV-DSVSWNAMIAA 498

Query: 439 CRIHGN 444
              HG+
Sbjct: 499 LAQHGH 504



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 165/336 (49%), Gaps = 11/336 (3%)

Query: 29  YSSLIQFC----RQNRALEEGKKVHSHLKSSGFKPG----VFISNCLLDMYAKCGNISDA 80
           Y+SLI  C     +      G++VH ++  +  +P     + ++N L+  Y K   + +A
Sbjct: 286 YTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEA 345

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           + +FD+M  RD+ S+N ++SG+     +E+A ++F EMP+R+  +WT MISG  +     
Sbjct: 346 RRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGE 405

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           E L L+  M++ E      +  +  ++A S +  L  G++IH  ++R G DS     +AL
Sbjct: 406 EGLKLFNQMKS-EGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNAL 464

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MY +CG +  A  +F  M   D VSW AMI    Q G   +   LF +++K  I P+ 
Sbjct: 465 ITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDR 524

Query: 261 FTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            TF  +L AC      + G+     M TR G  P     + L+ +  + G    ++ V  
Sbjct: 525 ITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIK 584

Query: 320 GMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            MP       W +L+AG   +G  +  ++  + LL+
Sbjct: 585 SMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLE 620



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 156/390 (40%), Gaps = 95/390 (24%)

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK------ 219
           L+ VS  Q +   + +H +I+ +GF  +  + + L ++Y K  +I  AR++FDK      
Sbjct: 14  LNHVSTTQII--ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDI 71

Query: 220 ---------------------------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
                                      +  RD VS+ AMI  Y           LF ++ 
Sbjct: 72  VARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMK 131

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQ-VHGYMTRIGYDPYSFAASALVHMYSKCGN- 310
           + G  P+ FTF+ VL+A +  A EE   Q +H  + ++G        +AL+  Y  C + 
Sbjct: 132 RYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASS 191

Query: 311 --------VENSKKVFNGMPR---------------------------------PDLVSW 329
                   + +++KVF+  P+                                 P  V+W
Sbjct: 192 PLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAW 251

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            ++I+GY + G+ ++A + F  +   G Q D   +  +++AC   G  ++ +  F+  ++
Sbjct: 252 NAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC---GSCNEKMGMFNCGRQ 308

Query: 390 KHG-----LTYTADHYA-----CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
            HG     +   + H+       ++    +  R  EA  V  KMP++ D   W ++L G 
Sbjct: 309 VHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVLSG- 366

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTM 469
             + N    + A     E+   N  T+  M
Sbjct: 367 --YVNAQRIEEANSIFSEMPERNVLTWTVM 394



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 120/253 (47%), Gaps = 7/253 (2%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N +R++EA  I  ++   +   ++ +I    QN   EEG K+ + +KS G +P  +    
Sbjct: 369 NAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAG 428

Query: 67  LLDMYAKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +   +  G++ + Q +  ++     +  + + N +I+ +++ G +E A ++F  MP  D
Sbjct: 429 AITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVD 488

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + SW AMI+   ++   ++A++L+  M   E+ + ++ T  ++L+A +    ++ G+   
Sbjct: 489 SVSWNAMIAALAQHGHGVKAIELFEQMMK-EDILPDRITFLTILTACNHAGLIKEGRHYF 547

Query: 183 GYI-MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGR 240
             +  R G    E  ++ L D+  + G   +A+ +   M  +     W A++      G 
Sbjct: 548 DTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGN 607

Query: 241 REEGFALFSELIK 253
            E G      L++
Sbjct: 608 MELGIQAADRLLE 620



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           +R  A+ +   LN  +    + + + VH ++   G+ P +F  + L+++Y K  N+  ++
Sbjct: 3   VRDLAYRYLTQLNHVS--TTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYAR 60

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           K+F+ +P+PD+V+ T+L++ Y+ +G    A + F       T  D + +  ++TA +H  
Sbjct: 61  KLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFN--ATPLTIRDTVSYNAMITAYSHGN 118

Query: 376 LVDKGLQYFHSIK 388
                L  F  +K
Sbjct: 119 DGHAALNLFVQMK 131


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 258/457 (56%), Gaps = 34/457 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+   +S+ ++ C    ALE+G ++H      GF+  V + N L+DMY+KCG I+    
Sbjct: 467 YPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN---- 522

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                      +A  +F  M  R   SW AMI+GYV       A
Sbjct: 523 ---------------------------EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRA 555

Query: 143 LDLYRMMQNFE-NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD--SDEVVWSA 199
           L  + MMQ  +     ++FTL+S+L A S+   +  GK+IHG+++R+GF   S   +  +
Sbjct: 556 LATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGS 615

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L D+Y KCG++  AR+ FD++ ++ ++SW+++I  Y QEG   E   LF  L +   + +
Sbjct: 616 LVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQID 675

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           +F  + ++   AD A  + GKQ+   + ++     +  +++LV MY KCG V+ ++K F 
Sbjct: 676 SFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFA 735

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D++SWT +I GY ++G+  KA+  F  +L+   +PD + ++ VL+AC+H+G++ +
Sbjct: 736 EMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKE 795

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G + F  + E  G+    +HYAC+VDLL R+GR  EA+ ++  MP+KP+  +W +LL  C
Sbjct: 796 GEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLC 855

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           R+HG+++L K   + L  I+ +NPA YV M+N+Y  A
Sbjct: 856 RVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQA 892



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/424 (31%), Positives = 207/424 (48%), Gaps = 48/424 (11%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
            +S+ + SG    +  SN L+DMY KC             +E+ +               
Sbjct: 391 TNSNFRLSGSGLNLITSNYLIDMYCKC-------------REQLI--------------- 422

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
              A  +FD MP+R+  SWTA++SG+V       +L L+  M   +    N+FT S+ L 
Sbjct: 423 ---AYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGR-QGIYPNEFTFSTNLK 478

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           A   +  L  G +IHG+ ++ GF+    V ++L DMY KCG INEA ++F  MV R ++S
Sbjct: 479 ACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLIS 538

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGI--RPNAFTFAGVLNACADHAAEELGKQVHGY 285
           W AMI  Y   G      A F  + ++ I  RP+ FT   +L AC+       GKQ+HG+
Sbjct: 539 WNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGF 598

Query: 286 MTRIGYDPYSFA--ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           + R G+   S A    +LV +Y KCGN+ +++K F+ +    ++SW+SLI GYAQ G   
Sbjct: 599 LVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFV 658

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY-FHSIKEKHGLTYTADHYAC 402
           +A+  F+ L +  +Q D  V   ++       L+ +G Q     +K   GL  +  +   
Sbjct: 659 EAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSN--S 716

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL-----FE 457
           +VD+  + G   EAE   ++M +K D   W  ++ G   HG   L K+A           
Sbjct: 717 LVDMYLKCGLVDEAEKCFAEMQLK-DVISWTVMITGYGKHG---LGKKAVSIFNKMLRHN 772

Query: 458 IEPE 461
           IEP+
Sbjct: 773 IEPD 776



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPGVFISNCLLDMYAKC 74
           ++L     P    Y +++  C  +  ++EG+++ S L ++ G KP V    C++D+  + 
Sbjct: 767 KMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRA 826

Query: 75  GNISDAQTLFDEMQER-DVCSYNTMISGFTKGGSLEQARNL 114
           G + +A+ L D M  + +V  + T++S     G +E  + +
Sbjct: 827 GRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEV 867


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 265/470 (56%), Gaps = 38/470 (8%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +E+LQ+ +Q+      P+    S  ++ C    A   GK VH       +   +F+   L
Sbjct: 219 EESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIAL 278

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L++YAK G I DAQ                                LF+EMP+ D   W+
Sbjct: 279 LELYAKSGEIIDAQ-------------------------------RLFEEMPKTDLIPWS 307

Query: 128 AMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            MI+ Y + ++  EALDL+ RM Q   + V N FT +SVL A ++   L LGK+IH  ++
Sbjct: 308 LMIARYAQSDRSKEALDLFLRMRQT--SVVPNNFTFASVLQACASSVSLDLGKQIHSCVL 365

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G +S+  V +A+ D+Y KCG I  + ++F+++ DR+ V+W  +I  Y Q G  E    
Sbjct: 366 KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMN 425

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF+ +++  ++P   T++ VL A A  AA E G Q+H    +  Y+  +  A++L+ MY+
Sbjct: 426 LFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYA 485

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG + +++  F+ M + D VSW ++I GY+ +GM  +AL  F+++  +  +P+ + FVG
Sbjct: 486 KCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVG 545

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC++AGL+ KG  +F S+ + + +    +HY C+V LL R GRF EA  +I ++  +
Sbjct: 546 VLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQ 605

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P   +W +LLG C IH  +DL +  A+ + E+EP + AT+V ++N+YA+A
Sbjct: 606 PSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATA 655



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 185/349 (53%), Gaps = 5/349 (1%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD-LYRMM 149
           D+ + N +++ + +  SL+ A  LFDEMPQ +  S+  +  GY R +Q  +AL  + R+ 
Sbjct: 69  DLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIF 128

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +  E    N F  +++L  + ++    L   +H  + + G  +D  V +AL D Y   G+
Sbjct: 129 K--EGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGN 186

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           ++ AR +FD +  +D+VSWT M+  Y +    EE   LF+++   G +PN FT +G L +
Sbjct: 187 VDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKS 246

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C    A  +GK VHG   +  YD   F   AL+ +Y+K G + +++++F  MP+ DL+ W
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           + +IA YAQ+    +AL+ F  + ++   P++  F  VL AC  +  +D G Q  HS   
Sbjct: 307 SLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVL 365

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           K GL         I+D+ A+ G    +  +  ++P + D   W +++ G
Sbjct: 366 KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND-VTWNTIIVG 413



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 169/333 (50%), Gaps = 40/333 (12%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R KEAL +  ++      P+   ++S++Q C  + +L+ GK++HS +   G    VF+SN
Sbjct: 318 RSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSN 377

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            ++D+YAKCG I ++  LF+E+ +R+  ++NT+I G+ + G  E+A NLF  M + D   
Sbjct: 378 AIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHD--- 434

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                       QP E                   T SSVL A +++  L  G +IH   
Sbjct: 435 -----------MQPTEV------------------TYSSVLRASASLAALEPGLQIHSLT 465

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++T ++ D VV ++L DMY KCG IN+AR  FDKM  RD VSW AMI  Y   G   E  
Sbjct: 466 IKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEAL 525

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD--PYSFAASALVH 303
            LF  +  +  +PN  TF GVL+AC++      G Q H       YD  P     + +V 
Sbjct: 526 NLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKG-QAHFESMSKDYDIKPCIEHYTCMVW 584

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           +  + G  + + K+   +  +P ++ W +L+  
Sbjct: 585 LLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGA 617



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 14/266 (5%)

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK +H +I++ G   D    + L + Y +  S+ +A ++FD+M   + +S+  +   Y +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           + +  +       + K G   N F F  +L          L   +H  + ++G+   +F 
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +AL+  YS  GNV+ ++ VF+ +   D+VSWT ++A YA+N   +++L+ F  +   G 
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTADHYACI--VDLLARSG 411
           +P++    G L +C        GL+ F+  K  HG      Y  D +  I  ++L A+SG
Sbjct: 234 KPNNFTISGALKSCL-------GLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSG 286

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLG 437
              +A+ +  +MP K D   W+ ++ 
Sbjct: 287 EIIDAQRLFEEMP-KTDLIPWSLMIA 311


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 149/462 (32%), Positives = 264/462 (57%), Gaps = 34/462 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +++ Q + P+    SS+++ CR  + L  G  VH  +   G +  +++ N +++MYA C 
Sbjct: 101 EMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCS 160

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
              +A  L                              +F ++  +++ +WT +I+G+  
Sbjct: 161 VTMEAACL------------------------------IFRDIKVKNDVTWTTLITGFTH 190

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
               I  L +Y+ M   EN+    + ++  + A ++I  +  GK+IH  +++ GF S+  
Sbjct: 191 LGDGIGGLKMYKQML-LENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLP 249

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +++ D+Y +CG ++EA+  F +M D+D+++W  +I    +     E   +F      G
Sbjct: 250 VMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQG 308

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
             PN +TF  ++ ACA+ AA   G+Q+HG + R G++     A+AL+ MY+KCGN+ +S+
Sbjct: 309 FVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQ 368

Query: 316 KVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +VF  +  R +LVSWTS++ GY  +G   +A+E F+ ++ SG +PD IVF+ VL+AC HA
Sbjct: 369 RVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHA 428

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLV+KGL+YF+ ++ ++G+    D Y C+VDLL R+G+  EA +++ +MP KPD+  W +
Sbjct: 429 GLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGA 488

Query: 435 LLGGCRIHGNLDLAKR-AAEALFEIEPENPATYVTMANIYAS 475
           +LG C+ H +  L  R AA  + E++P+   TYV ++ IYA+
Sbjct: 489 ILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAA 530



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 189/394 (47%), Gaps = 10/394 (2%)

Query: 53  KSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD--VCSYNTMISGFTKGGSLEQ 110
           +S+ FKP   I N +       G  S   T +   + +   + + N ++S F KG  +E+
Sbjct: 8   RSNAFKP---IPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKG-LVEE 63

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           AR+LFDEMP RD  +WTAMI+GY   N    A + +  M   + +  N+FTLSSVL +  
Sbjct: 64  ARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVK-QGTSPNEFTLSSVLKSCR 122

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR-QIFDKMVDRDVVSWT 229
            ++ L  G  +HG +++ G +    V +A+ +MY  C    EA   IF  +  ++ V+WT
Sbjct: 123 NMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWT 182

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
            +I  +   G    G  ++ +++        +     + A A   +   GKQ+H  + + 
Sbjct: 183 TLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKR 242

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G+       ++++ +Y +CG +  +K  F+ M   DL++W +LI+   ++    +AL  F
Sbjct: 243 GFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSD-SSEALLMF 301

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           +     G  P+   F  ++ AC +   ++ G Q  H    + G     +    ++D+ A+
Sbjct: 302 QRFESQGFVPNCYTFTSLVAACANIAALNCG-QQLHGRIFRRGFNKNVELANALIDMYAK 360

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            G   +++ V  ++  + +   W S++ G   HG
Sbjct: 361 CGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHG 394



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 175/339 (51%), Gaps = 43/339 (12%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK   Q+L + +  +P   +  ++      ++  GK++H+ +   GF+  + + N +LD+
Sbjct: 198 LKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDL 257

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y +CG +S+A+  F EM+++D+ ++NT+IS   +  S E                  A++
Sbjct: 258 YCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSE------------------ALL 299

Query: 131 SGYVRYNQPIEALDLYRMMQNFENS--VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                            M Q FE+   V N +T +S+++A + I  L  G+++HG I R 
Sbjct: 300 -----------------MFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRR 342

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFAL 247
           GF+ +  + +AL DMY KCG+I +++++F ++VD R++VSWT+M+  Y   G   E   L
Sbjct: 343 GFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVEL 402

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYS 306
           F +++ SGIRP+   F  VL+AC      E G +    M +  G +P     + +V +  
Sbjct: 403 FDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLG 462

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIA---GYAQNGM 341
           + G +  + ++   MP +PD  +W +++     +  NG+
Sbjct: 463 RAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGL 501


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 249/452 (55%), Gaps = 32/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ ++Y SL+Q C     LE GK++HSH+  +     + +   + +MY +CG        
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCG-------- 237

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   LE A+ +FD M  ++  +WT ++ GY +  +   AL
Sbjct: 238 -----------------------WLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVAL 274

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M   E    ++F  S VL     ++   +GK+IH +I++ G +S+  V + L D 
Sbjct: 275 ELFARMA-MEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDF 333

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG I  A + F ++ + + VSW+A+I  + Q GR E+   +F+ L   G+  N+F +
Sbjct: 334 YVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIY 393

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             V  ACA  A   +G Q HG   + G   Y +  SA+V MYSKCG ++ +++ F  +  
Sbjct: 394 TSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDE 453

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           PD V+WT++I+GYA +G   +AL +F  +   G +P+ + F+ VLTAC+H+GLV +  QY
Sbjct: 454 PDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQY 513

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             S+   +G+  T DHY C++D  +R+G   EA ++I++MP +PD   W SLLGGC  H 
Sbjct: 514 LGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHC 573

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +L L K AAE LF ++P + A Y+ + N+Y++
Sbjct: 574 DLKLGKIAAENLFRLDPGDTAGYILLFNLYSA 605



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 222/455 (48%), Gaps = 44/455 (9%)

Query: 5   LCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L  Q +LKEA   L ++       +P  Y  L + C + R+L +G+ +H  L+ +   P 
Sbjct: 62  LSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPS 121

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
             I NCLL MY  CG+  D Q +FDEM  +++ S+  +IS + K G LE+A  LF +M  
Sbjct: 122 GSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQA 181

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                     SG +R N  +        M   ++ +   F              L LGK+
Sbjct: 182 ----------SG-IRPNSAV-------YMSLLQSCLGPSF--------------LELGKQ 209

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H +++R   +++  V +A+ +MY +CG +  A+ +FD M  ++ V+WT ++  Y Q  +
Sbjct: 210 MHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKK 269

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E    LF+ +   G+  + F F+ VL  C      ++GKQ+H ++ ++G +      + 
Sbjct: 270 LEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTP 329

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV  Y KCG++E++ + F  +  P+ VSW++LI+G++Q+G  +  ++ F  L   G   +
Sbjct: 330 LVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLN 389

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
             ++  V  AC     ++ G Q  H    K GL       + +V + ++ GR   A    
Sbjct: 390 SFIYTSVFQACAAQANLNMGSQA-HGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAF 448

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +  +PD   W +++ G   HGN      AAEAL
Sbjct: 449 ESID-EPDAVAWTAIISGYAYHGN------AAEAL 476


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 265/452 (58%), Gaps = 18/452 (3%)

Query: 29  YSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +++L+  + R NR +EE +++   +        V   N +++ YA+ G I  A  LF+ M
Sbjct: 132 WTALVSGYVRWNR-IEEARRLFDAMPVKN----VISWNTMIEGYARKGWIDQALDLFEXM 186

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            ER+V S+NT+I+ F +   +++A+ LF+ MP+RD  SWT M++G  +  +  +A  L+ 
Sbjct: 187 PERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFD 246

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M      V N  + ++++  +   Q +RL +     +     + +   W+ +   + + 
Sbjct: 247 KM-----PVRNVVSWNTMI--IGYAQNMRLDEAFK--LFEQMPERELSSWNTMITGFIQN 297

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGV 266
           G +  A   F KM +++VV+WTA+I  + Q+GR EE   +FSE+   + ++PN  TF  V
Sbjct: 298 GKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN--GMPRP 324
           L AC+  AA   G+Q+H  +++  Y   +   SAL++MYSKCG +E ++K+F+   +   
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+VSW  +IA YA +G   KA+  F+ +   G +PD++ ++ +L+AC+HAGLVD+GL+ F
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLF 477

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            ++     +    DH+ C+VDL  R+GR  EA D I  + +KP   +WA+LL GC +HG+
Sbjct: 478 ENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH 537

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +DL K  AE L E EPEN  TY+ ++NIYAS 
Sbjct: 538 IDLGKLTAEKLLETEPENAGTYLVLSNIYAST 569



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 195/402 (48%), Gaps = 23/402 (5%)

Query: 47  KVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG 106
           K+ S ++       V  SN L+    K G I +A+ +F+EM +RDV S+  +I+G+ K G
Sbjct: 52  KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111

Query: 107 SLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
            +E+A+ LFD      N  +WTA++SGYVR+N+  EA  L+  M   +N +S    +   
Sbjct: 112 MIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMP-VKNVISWNTMIEGY 170

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
                  Q L L + +         + + V W+ +   + +   ++EA+++F++M +RDV
Sbjct: 171 ARKGWIDQALDLFEXMP--------ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV 222

Query: 226 VSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           +SWT M+    + GR ++   LF ++ +++ +  N        N   D A +   +    
Sbjct: 223 ISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPER 282

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
            ++         + + ++  + + G +E +   F  M   ++V+WT++I+G+ Q+G  ++
Sbjct: 283 ELS---------SWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEE 333

Query: 345 ALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           AL+ F E+   +  +P+   FV VL AC+    + +G Q  H I  K      AD  + +
Sbjct: 334 ALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG-QQIHQIISKTVYQEVADVVSAL 392

Query: 404 VDLLARSGRFHEAEDVISKMPM-KPDKFLWASLLGGCRIHGN 444
           +++ ++ G    A  +     +   D   W  ++     HG+
Sbjct: 393 INMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGH 434


>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
           [Vitis vinifera]
          Length = 711

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 243/441 (55%), Gaps = 3/441 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +S+ +  C    AL+EG ++H      G+     +S+ L+DMYAKCG++  A  +
Sbjct: 260 PLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRI 319

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+    +++ S+ +++SG+   G   +AR LFDEMP+R   SW AM++GY  + Q  EAL
Sbjct: 320 FELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEAL 379

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +   +M+     + +  T+  +L+  + +  +  GK++HG+I R G  S+  V +AL  M
Sbjct: 380 EFVFLMRKATQDI-DHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHM 438

Query: 204 YGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           YGKCG++   R  F +M   RD +SW A++  + + G  EE   +F E+ +    P+ FT
Sbjct: 439 YGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEM-QWETTPSKFT 497

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L+ACA+  A E GKQ+HG+M R GY+    A  ALV MYSKC  +E + KVF   P
Sbjct: 498 LGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAP 557

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL+ W S+I G   NG     L  F L+ + G +PDHI F G+L  C   GL   G +
Sbjct: 558 SRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTE 617

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+  K+ +    +HY  +++L  R G   E ED I +MP +P   +   +   C  H
Sbjct: 618 YFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVAMLTRVFNACSEH 677

Query: 443 GNLDLAKRAAEALFEIEPENP 463
           G+  L K AAE L E+ P  P
Sbjct: 678 GHSRLGKWAAEQLNELNPSTP 698



 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/507 (30%), Positives = 248/507 (48%), Gaps = 75/507 (14%)

Query: 7   NQRRLKEALQILHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           N  RL++A+ IL     P P S+Y+ L Q C  N A+ E +KV SHL +    P +F+ N
Sbjct: 40  NAGRLRKAVSILFASPVPFPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLN 99

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
             ++ Y KC  + DA                               R LF+EMPQRD  S
Sbjct: 100 RAIETYGKCSCLDDA-------------------------------RELFEEMPQRDGGS 128

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI+ Y +     +AL L+  M       +N+ T +SVL + + +  L L K+IHG I
Sbjct: 129 WNAMITAYAQGGCAEKALWLFSRMNRL-GIWANEITFASVLGSCATVLALFLSKQIHGLI 187

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ GF  + ++ S+L D+YGKC  +++AR++FD++ + + +SW  ++ RY + G  +E  
Sbjct: 188 VKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAV 247

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F ++I++ IRP  FTF+  L AC+  +A + G Q+HG   RIGYD     +S+L+ MY
Sbjct: 248 VMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMY 307

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG-----------MPDK---------- 344
           +KCG++E++ ++F      +L+SWTS+++GYA +G           MP++          
Sbjct: 308 AKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLA 367

Query: 345 ----------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
                     ALE+  L+ K+    DH+    +L  C     V+ G Q  H    +HGL 
Sbjct: 368 GYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQ-VHGFIYRHGLY 426

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
                   ++ +  + G          +M    D+  W +LL     HG   L++ A   
Sbjct: 427 SNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHG---LSEEAMTI 483

Query: 455 LFEIEPENPATYVTM-------ANIYA 474
             E++ E   +  T+       ANI+A
Sbjct: 484 FGEMQWETTPSKFTLGTLLSACANIFA 510



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 14/158 (8%)

Query: 12  KEALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +EA+ I  ++   + PS     +L+  C    ALE+GK++H  +  +G++  V     L+
Sbjct: 478 EEAMTIFGEMQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALV 537

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNF 124
           DMY+KC  +  A  +F E   RD+  +N+MI G    G       LF  M +     D+ 
Sbjct: 538 DMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHI 597

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
           ++  ++ G +          L  +   + NS+SNK+ +
Sbjct: 598 TFQGILLGCI-------CEGLAGLGTEYFNSMSNKYCI 628


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 221/350 (63%), Gaps = 31/350 (8%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N+FTLS+V+ A ++I  L  GK+ H YI++ GF+SD VV +AL  MY +CGS+ +A  +F
Sbjct: 9   NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68

Query: 218 DKMVDR-------------------------------DVVSWTAMIGRYFQEGRREEGFA 246
           DKM +R                               DVVSWTA+I  Y Q G  +E   
Sbjct: 69  DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F+++ K+G++ + F    VL+ACAD AA ELG+Q H Y+ + G+       SALV MY+
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYA 188

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K G++E++ +VF+ MP+ + VSW S+I G AQ+G  + A+  FE +L++G +P+ I FVG
Sbjct: 189 KSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVG 248

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H GLV++G  YF+ + + +G+     HY C++DLL R+G   EAE+ I+ MP++
Sbjct: 249 VLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVE 308

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LLG CRIHGN +LAKR AE L  +E +    YV ++NIYA+A
Sbjct: 309 PDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA 358



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 194/332 (58%), Gaps = 3/332 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    S++++ C    +LE+GK+ H+++   GF+  V +   L+ MYA+CG++ DA  +
Sbjct: 8   PNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV 67

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+M ER   ++N MI+G  +   +++A  LF EM +RD  SWTA+I+GY +     E+L
Sbjct: 68  FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESL 127

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +++  M+      S++F + SVLSA + +  L LG++ H Y++++GF  D VV SAL DM
Sbjct: 128 NVFNQMRK-TGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM 186

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K GS+ +A Q+FDKM  R+ VSW ++I    Q GR  +   LF +++++GI+PN  +F
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246

Query: 264 AGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            GVL+AC+       G+     MT+  G  P     + ++ +  + G ++ ++   NGMP
Sbjct: 247 VGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMP 306

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             PD+  W +L+     +G  + A    E LL
Sbjct: 307 VEPDVSVWGALLGACRIHGNTELAKRIAEHLL 338



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 33/224 (14%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           ++  G++PN FT + V+ ACA  A+ E GKQ H Y+ ++G++      +ALVHMY++CG+
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 311 VENSKKVFNG-------------------------------MPRPDLVSWTSLIAGYAQN 339
           +E++  VF+                                M   D+VSWT++IAGYAQN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G  D++L  F  + K+G + D  +   VL+AC     ++ G Q FH+   + G       
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVV 179

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            + +VD+ A+SG   +A  V  KMP + ++  W S++ GC  HG
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQR-NEVSWNSIITGCAQHG 222



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      +++A Q+  ++   +   ++S+I  C Q+    +   +   +  +G KP  
Sbjct: 184 VDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNE 243

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQER-----DVCSYNTMISGFTKGGSLEQARNLFD 116
                +L   +  G +++ +  F+ M +      DV  Y  MI    + G L++A N  +
Sbjct: 244 ISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFIN 303

Query: 117 EMPQRDNFS-WTAMI 130
            MP   + S W A++
Sbjct: 304 GMPVEPDVSVWGALL 318


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 231/380 (60%), Gaps = 1/380 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++++ + K G +  A ++F+   +R++ +W+AMI+GY +  +   A+ ++  M      
Sbjct: 153 NSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHA-AGF 211

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
              +FT   VL+A S +  L +GK+ HG +++ GF+    V SAL DMY KCG I +A++
Sbjct: 212 TPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKE 271

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            FD++ + D+V WTAM+  + Q G  EE   L++ + K GI P+  T A  L ACA  AA
Sbjct: 272 GFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAA 331

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            E GKQ+H  + + G    +   SAL  MYSKCGN+E+   VF  +P  D+++W S+I+G
Sbjct: 332 LEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISG 391

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           ++QNG  + AL+ FE +   GT PD+I F+ +L AC+H GLVD+G +YF  + + +GLT 
Sbjct: 392 FSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTP 451

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             DHYAC+VD+L+R+G   EA+D I  + +     LW  +LG CR   + D+   A E L
Sbjct: 452 RLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERL 511

Query: 456 FEIEPENPATYVTMANIYAS 475
            E+   + + Y+ ++NIYAS
Sbjct: 512 MELGTGDSSAYILLSNIYAS 531



 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 196/347 (56%), Gaps = 4/347 (1%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           VC+  ++++ + K G +  AR +FD MPQR++FSW+ M++GY       EA DL+R+M  
Sbjct: 49  VCT--SLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLE 106

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
              S  ++F  ++VLSAVS    L +G+++HG I++ G      V ++L  MY K G + 
Sbjct: 107 ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMG 166

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            A  +F+   +R+ ++W+AMI  Y Q G  +   ++FS++  +G  P  FTF GVLNA +
Sbjct: 167 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 226

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           D  A  +GKQ HG M ++G++   +  SALV MY+KCG + ++K+ F+ +   D+V WT+
Sbjct: 227 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 286

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +++G+ QNG  ++AL  +  + K G  P        L AC     ++ G Q  H+   K+
Sbjct: 287 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ-LHTQIVKY 345

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           GL   A   + +  + ++ G   +   V  ++P + D   W S++ G
Sbjct: 346 GLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR-DVIAWNSIISG 391



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 33/276 (11%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  GK+ H  +   GF+  +++ + L+DMYAKCG I+DA+  FD++ E D+  +  M+S
Sbjct: 230 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS 289

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G  + G  E+A  L+  M +                                E  + +K 
Sbjct: 290 GHVQNGEHEEALTLYARMDK--------------------------------EGIIPSKS 317

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T++S L A + I  L  GK++H  I++ G      V SALS MY KCG++ +   +F ++
Sbjct: 318 TIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 377

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            DRDV++W ++I  + Q G       LF E+   G  P+  TF  +L AC+     + G 
Sbjct: 378 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 437

Query: 281 QVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSK 315
           +    MT+  G  P     + +V + S+ G ++ +K
Sbjct: 438 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAK 473



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 3/248 (1%)

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           S+  V ++L +MY K G +++AR++FD M  R+  SW+ M+  Y  E   EE F LF  +
Sbjct: 45  SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 104

Query: 252 IKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           ++      + F    VL+A +      +G+Q+HG + + G   +    ++LV MY+K G 
Sbjct: 105 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 164

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +  +  VF      + ++W+++I GYAQNG  D A+  F  +  +G  P    FVGVL A
Sbjct: 165 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 224

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
            +  G +  G Q  H +  K G        + +VD+ A+ G   +A++   ++  + D  
Sbjct: 225 SSDLGALAVGKQA-HGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL-YEVDIV 282

Query: 431 LWASLLGG 438
           LW +++ G
Sbjct: 283 LWTAMVSG 290



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 34/212 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS S  +S ++ C    ALE GK++H+ +   G   G  + + L  MY+KCGN+ D  ++
Sbjct: 314 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 373

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  + +RDV ++N++ISGF++ G    A +LF+EM                         
Sbjct: 374 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM------------------------- 408

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSD 202
                    E ++ +  T  ++L A S +  +  G E    + +  G       ++ + D
Sbjct: 409 -------KMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVD 461

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           +  + G + EA+   + + +D     W  ++G
Sbjct: 462 ILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 493



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 9/157 (5%)

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           +  ++L++MY K G V ++++VF+GMP+ +  SW++++AGYA     ++A + F L+L+ 
Sbjct: 48  YVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE 107

Query: 356 -GTQPDHIVFVGVLTACTHAGLVDKGL---QYFHSIKEKHGLTYTADHYACIVDLLARSG 411
             ++    V   VL+A +    V  GL   +  H +  K GL         +V + A++G
Sbjct: 108 CPSEKSEFVATAVLSAVS----VPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 163

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
               A  V      + +   W++++ G   +G  D A
Sbjct: 164 CMGAAFHVFES-SRERNSITWSAMITGYAQNGEADSA 199


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 262/468 (55%), Gaps = 34/468 (7%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +  +K  +++++Q   P     +S++Q C     LE GK VH ++ +SG++     SN L
Sbjct: 358 EESIKLFMEMVNQFK-PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNIL 416

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           ++MYAKC                               G+L  ++ +F  M  +D+ SW 
Sbjct: 417 INMYAKC-------------------------------GNLLASQEVFSGMKCKDSVSWN 445

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI+ Y++     EA+ L++MM+   +   +  T   +LS  + +  L LGKE+H  + +
Sbjct: 446 SMINVYIQNGSFDEAMKLFKMMKT--DVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK 503

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            GF+S+ VV + L DMY KCG + ++ ++F+ M  RD+++W  +I           G  +
Sbjct: 504 MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 563

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
            S +   G+ P+  T   +L  C+  AA+  GK++HG + ++G +      + L+ MYSK
Sbjct: 564 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSK 623

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG++ NS +VF  M   D+V+WT+LI+     G   KA+  F  +  +G  PDH+ FV +
Sbjct: 624 CGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAI 683

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           + AC+H+GLV++GL YFH +K+ + +    +HYAC+VDLL+RS    +AED I  MP+KP
Sbjct: 684 IFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKP 743

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           D  +W +LL  CR+ G+ ++A+R +E + E+ P++   YV ++N+YA+
Sbjct: 744 DSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAA 791



 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/428 (32%), Positives = 210/428 (49%), Gaps = 36/428 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    + S+I  C      E  K +H  +   GF   ++I N L+DMY +  ++  A+ 
Sbjct: 171 QPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARK 230

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+EM  RDV S+N++ISG+   G                   W              EA
Sbjct: 231 VFEEMPLRDVVSWNSLISGYNANG------------------YWN-------------EA 259

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L++Y   +N    V + +T+SSVL A   +  +  G  IHG I + G   D +V + L  
Sbjct: 260 LEIYYRFRNL-GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 318

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY K   + + R+IFDKMV RD VSW  MI  Y Q G  EE   LF E++    +P+  T
Sbjct: 319 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLT 377

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L AC      E GK VH YM   GY+  + A++ L++MY+KCGN+  S++VF+GM 
Sbjct: 378 ITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 437

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D VSW S+I  Y QNG  D+A++ F+ ++K+  +PD + +V +L+  T  G +  G +
Sbjct: 438 CKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKE 496

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H    K G          +VD+ A+ G   ++  V   M  + D   W +++  C   
Sbjct: 497 -LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHS 554

Query: 443 GNLDLAKR 450
            + +L  R
Sbjct: 555 EDCNLGLR 562



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 224/493 (45%), Gaps = 74/493 (15%)

Query: 2   IDILCNQRRL-------------------------------KEALQILHQISH----PSP 26
           ID+ C    L                                EAL+I ++  +    P  
Sbjct: 216 IDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDS 275

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
              SS+++ C    ++EEG  +H  ++  G K  V ++N LL MY K   + D + +FD+
Sbjct: 276 YTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDK 335

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M  RD  S+NTMI G+++ G  E++  LF EM               V   +P    DL 
Sbjct: 336 MVLRDAVSWNTMICGYSQVGLYEESIKLFMEM---------------VNQFKP----DL- 375

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
                         T++S+L A   +  L  GK +H Y++ +G++ D    + L +MY K
Sbjct: 376 -------------LTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAK 422

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG++  ++++F  M  +D VSW +MI  Y Q G  +E   LF +++K+ ++P++ T+  +
Sbjct: 423 CGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVML 481

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+         LGK++H  + ++G++     ++ LV MY+KCG + +S KVF  M   D+
Sbjct: 482 LSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 541

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           ++W ++IA    +   +  L     +   G  PD    + +L  C+      +G +  H 
Sbjct: 542 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHG 600

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              K GL         ++++ ++ G    +  V   M  K D   W +L+  C ++G   
Sbjct: 601 CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE-- 657

Query: 447 LAKRAAEALFEIE 459
             K+A  A  E+E
Sbjct: 658 -GKKAVRAFGEME 669



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 223/465 (47%), Gaps = 40/465 (8%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R+ + L++LH+ S  +  ++SS+ +         +  K+HS + + G    V  S  L+ 
Sbjct: 58  RVMKTLRVLHECSRQT--LFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIA 115

Query: 70  MYAKCGNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            YA   + + + ++F       +V  +N++I   T  G   +A +L+ E  QR       
Sbjct: 116 KYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSE-TQRIRL---- 170

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                    QP                  + +T  SV++A + +    + K IH  ++  
Sbjct: 171 ---------QP------------------DTYTFPSVINACAGLLDFEMAKSIHDRVLXM 203

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF SD  + +AL DMY +   +++AR++F++M  RDVVSW ++I  Y   G   E   ++
Sbjct: 204 GFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIY 263

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
                 G+ P+++T + VL AC    + E G  +HG + +IG        + L+ MY K 
Sbjct: 264 YRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKF 323

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
             + + +++F+ M   D VSW ++I GY+Q G+ +++++ F + + +  +PD +    +L
Sbjct: 324 NGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF-MEMVNQFKPDLLTITSIL 382

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC H G ++ G +Y H      G          ++++ A+ G    +++V S M  K D
Sbjct: 383 QACGHLGDLEFG-KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-D 440

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEAL-FEIEPENPATYVTMANI 472
              W S++     +G+ D A +  + +  +++P++  TYV + ++
Sbjct: 441 SVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDS-VTYVMLLSM 484


>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 243/441 (55%), Gaps = 3/441 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +S+ +  C    AL+EG ++H      G+     +S+ L+DMYAKCG++  A  +
Sbjct: 260 PLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRI 319

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+    +++ S+ +++SG+   G   +AR LFDEMP+R   SW AM++GY  + Q  EAL
Sbjct: 320 FELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEAL 379

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +   +M+     + +  T+  +L+  + +  +  GK++HG+I R G  S+  V +AL  M
Sbjct: 380 EFVFLMRKATQDI-DHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHM 438

Query: 204 YGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           YGKCG++   R  F +M   RD +SW A++  + + G  EE   +F E+ +    P+ FT
Sbjct: 439 YGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEM-QWETTPSKFT 497

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L+ACA+  A E GKQ+HG+M R GY+    A  ALV MYSKC  +E + KVF   P
Sbjct: 498 LGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAP 557

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL+ W S+I G   NG     L  F L+ + G +PDHI F G+L  C   GL   G +
Sbjct: 558 SRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTE 617

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+  K+ +    +HY  +++L  R G   E ED I +MP +P   +   +   C  H
Sbjct: 618 YFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVAMLTRVFNACSEH 677

Query: 443 GNLDLAKRAAEALFEIEPENP 463
           G+  L K AAE L E+ P  P
Sbjct: 678 GHSRLGKWAAEQLNELNPSTP 698



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/507 (30%), Positives = 248/507 (48%), Gaps = 75/507 (14%)

Query: 7   NQRRLKEALQILHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           N  RL++A+ IL     P P S+Y+ L Q C  N A+ E +KV SHL +    P +F+ N
Sbjct: 40  NAGRLRKAVSILFASPVPFPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLN 99

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
             ++ Y KC  + DA                               R LF+EMPQRD  S
Sbjct: 100 RAIETYGKCSCLDDA-------------------------------RELFEEMPQRDGGS 128

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI+ Y +     +AL L+  M       +N+ T +SVL + + +  L L K+IHG I
Sbjct: 129 WNAMITAYAQGGCAEKALWLFSRMNRL-GIWANEITFASVLGSCATVLALFLSKQIHGLI 187

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ GF  + ++ S+L D+YGKC  +++AR++FD++ + + +SW  ++ RY + G  +E  
Sbjct: 188 VKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAV 247

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +F ++I++ IRP  FTF+  L AC+  +A + G Q+HG   RIGYD     +S+L+ MY
Sbjct: 248 VMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMY 307

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG-----------MPDK---------- 344
           +KCG++E++ ++F      +L+SWTS+++GYA +G           MP++          
Sbjct: 308 AKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLA 367

Query: 345 ----------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
                     ALE+  L+ K+    DH+    +L  C     V+ G Q  H    +HGL 
Sbjct: 368 GYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQ-VHGFIYRHGLY 426

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
                   ++ +  + G          +M    D+  W +LL     HG   L++ A   
Sbjct: 427 SNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHG---LSEEAMTI 483

Query: 455 LFEIEPENPATYVTM-------ANIYA 474
             E++ E   +  T+       ANI+A
Sbjct: 484 FGEMQWETTPSKFTLGTLLSACANIFA 510



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 21/214 (9%)

Query: 12  KEALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +EA+ I  ++   + PS     +L+  C    ALE+GK++H  +  +G++  V     L+
Sbjct: 478 EEAMTIFGEMQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALV 537

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNF 124
           DMY+KC  +  A  +F E   RD+  +N+MI G    G       LF  M +     D+ 
Sbjct: 538 DMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHI 597

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLG--KE 180
           ++  ++ G +          L  +   + NS+SNK+ +   L    ++  L  R G   E
Sbjct: 598 TFQGILLGCI-------CEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDE 650

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           +  +I R  F   E   + L+ ++  C     +R
Sbjct: 651 LEDFIKRMPF---EPTVAMLTRVFNACSEHGHSR 681


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/404 (37%), Positives = 240/404 (59%), Gaps = 15/404 (3%)

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G + +A+ LFD +  +DV +   MI G    G L +AR +FDEMPQR+  +WT+MISGY 
Sbjct: 154 GRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYA 213

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
             N+   A  L+ +M +      N+ T +++L   +     R G+      +        
Sbjct: 214 MNNKVDVARKLFEVMPD-----KNEVTWTAMLKGYT-----RSGRINEAAELFKAMPVKP 263

Query: 195 VVWSALSDM---YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           V  +A + M   +G  G + +AR +FD+M ++D  +W+A+I  Y ++G   E  ALFS +
Sbjct: 264 V--AACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLM 321

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
            + G+RPN  +   +L+ C   A+ + G+QVH  + R  +D   + +S L+ MY KCG++
Sbjct: 322 QREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDL 381

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
              K+VF+     D+V W S+IAGYAQ+G  +KALE F  +  SG  PD I F+GVL+AC
Sbjct: 382 VTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSAC 441

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
            + G V +GL+ F S+K K+ +    +HYAC+VDLL R+G+ +EA ++I  MP++ D  +
Sbjct: 442 GYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIV 501

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           W +LL  CR H NLDLA+ AA+ L ++EP +   Y+ ++N+YAS
Sbjct: 502 WGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYAS 545



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 170/333 (51%), Gaps = 7/333 (2%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LC++ RL EA +I  ++   +   ++S+I     N  ++  +K+   +            
Sbjct: 181 LCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKN----EVTW 236

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
             +L  Y + G I++A  LF  M  + V + N MI GF   G + +AR +FD+M ++D+ 
Sbjct: 237 TAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDG 296

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +W+A+I  Y R    +EAL L+ +MQ  E    N  ++ S+LS   ++  L  G+++H  
Sbjct: 297 TWSALIKIYERKGFELEALALFSLMQR-EGVRPNFPSIISILSVCGSLASLDHGRQVHSQ 355

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           ++R+ FD D  V S L  MY KCG +   +++FD+   +D+V W ++I  Y Q G  E+ 
Sbjct: 356 LVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA 415

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVH 303
             +F E+  SG  P+  TF GVL+AC      + G ++   M ++   D  +   + +V 
Sbjct: 416 LEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVD 475

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           +  + G +  +  +   MP   D + W +L++ 
Sbjct: 476 LLGRAGKLNEAMNLIENMPVEADAIVWGALLSA 508



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 79/448 (17%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           S F     I+ C +  +A+ G I  A+ +FD++Q + V S+N +++G+       +A+ L
Sbjct: 10  SYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKL 69

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           FD+MP+R+  SW  ++SGYV+     EA  ++           +K    +V+S  S ++ 
Sbjct: 70  FDKMPERNTISWNGLVSGYVKNGMISEARKVF-----------DKMPERNVVSWTSMVR- 117

Query: 175 LRLGKEIHGYIMRTGFDSDE-----------VVWSALSDMYGKCGSINEARQIFDKMVDR 223
                   GY+     D  E           V W+ +     + G ++EAR++FD +  +
Sbjct: 118 --------GYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK 169

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVV+ T MIG    EGR  E   +F E+ +     N   +  +++  A +   ++ +++ 
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQR----NVVAWTSMISGYAMNNKVDVARKLF 225

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RP------------------ 324
             M     D      +A++  Y++ G +  + ++F  MP +P                  
Sbjct: 226 EVMP----DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVG 281

Query: 325 ------------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
                       D  +W++LI  Y + G   +AL  F L+ + G +P+    + +L+ C 
Sbjct: 282 KARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCG 341

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
               +D G Q    +   H   +  D Y  + ++ +  + G     + V  +   K D  
Sbjct: 342 SLASLDHGRQVHSQLVRSH---FDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSK-DIV 397

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEI 458
           +W S++ G   HG     ++A E   E+
Sbjct: 398 MWNSIIAGYAQHG---FGEKALEVFHEM 422



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 54/291 (18%)

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R+ F S   +       + + G I+ AR IFD +  + V SW A++  YF   R  E   
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++ +     N  ++ G                                   LV  Y 
Sbjct: 69  LFDKMPER----NTISWNG-----------------------------------LVSGYV 89

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K G +  ++KVF+ MP  ++VSWTS++ GY Q G+ D+A    ELL     + + + +  
Sbjct: 90  KNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEA----ELLFWRMPEKNVVSWTV 145

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L      G VD+  + F  I  K  +  T      ++  L   GR  EA ++  +MP +
Sbjct: 146 MLGGLIEDGRVDEARRLFDMIPVKDVVASTN-----MIGGLCSEGRLSEAREIFDEMPQR 200

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYASA 476
            +   W S++ G  ++  +D+A++    LFE+ P+ N  T+  M   Y  +
Sbjct: 201 -NVVAWTSMISGYAMNNKVDVARK----LFEVMPDKNEVTWTAMLKGYTRS 246


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 253/467 (54%), Gaps = 43/467 (9%)

Query: 13  EALQILHQISH---PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           + + + H++ H   P       +I+ C +   ++EGK++H      GF   VF+   L++
Sbjct: 96  DGIVLFHELVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVN 155

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY+KCG I  A+ +FD M ++DV  +N++I G+ + G ++ A  LF+EMP+RD FSWT +
Sbjct: 156 MYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVL 215

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           + G  +  +   A  L+  M                        C  L            
Sbjct: 216 VDGLSKCGKVESARKLFDQMP-----------------------CRNL------------ 240

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
                V W+A+ + Y K G  + A ++F +M   D+V+W  MI  Y   G+  +   +F 
Sbjct: 241 -----VSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFF 295

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            ++K G RP+  T   VL+A +  A    G+ +H YM + G++      ++L+ MY+KCG
Sbjct: 296 MMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCG 355

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            +E++  VF  + +  +  WT++I G   +GM + AL  F  + K+G +P+ I+F+GVL 
Sbjct: 356 CIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLN 415

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC HAGLVD G QYF  +  ++ +  T +HY C+VD+L R+G   EA++ I  MP+ P+K
Sbjct: 416 ACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNK 475

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +W SLLGG R HG +D+ + AA+ + E+ PE    Y+ ++N+YA++
Sbjct: 476 VIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAAS 522



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 196/405 (48%), Gaps = 45/405 (11%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA--KCGNISDAQTLFDEMQERDVCSYNTM 98
           A +E +++H+    +      F+S+ LL +Y+  K  ++  A+++FD +Q R +  +NT+
Sbjct: 25  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           I  + +         LF E+                                     + +
Sbjct: 85  IKCYVENQFSHDGIVLFHEL---------------------------------VHEYLPD 111

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
            FTL  V+   + +  ++ GK+IHG  ++ GF SD  V  +L +MY KCG I+ AR++FD
Sbjct: 112 NFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFD 171

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            M+D+DVV W ++I  Y + G  +    LF E+ +     +AF++  +++  +     E 
Sbjct: 172 GMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVES 227

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            +++   M       +    +A+++ Y K G+ +++ ++F  MP  DLV+W  +IAGY  
Sbjct: 228 ARKLFDQMPCRNLVSW----NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYEL 283

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           NG    A++ F ++LK G++P H   V VL+A +   ++ KG ++ HS  EK+G      
Sbjct: 284 NGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG-RWIHSYMEKNGFELDGI 342

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               ++++ A+ G    A  V   +  K     W +++ G  IHG
Sbjct: 343 LGTSLIEMYAKCGCIESALTVFRAIQKKKVGH-WTAIIVGLGIHG 386



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYG--KCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           +++H + ++T   +   V S L  +Y   K   +  AR IFD++  R ++ W  +I  Y 
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           +     +G  LF EL+   + P+ FT   V+  CA     + GKQ+HG   +IG+    F
Sbjct: 90  ENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
              +LV+MYSKCG ++ ++KVF+GM   D+V W SLI GYA+ G  D AL+ FE +    
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM---- 204

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            + D   +  ++   +  G V+   + F  +  ++ +++ A     +++   +SG F  A
Sbjct: 205 PERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNA-----MINGYMKSGDFDSA 259

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            ++  +MP+  D   W  ++ G  ++G  
Sbjct: 260 LELFYQMPIW-DLVTWNLMIAGYELNGQF 287


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 255/454 (56%), Gaps = 7/454 (1%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKS-SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +++++    +N   E+   + S L S +  KP  F   C++   A   ++   Q +    
Sbjct: 175 WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 234

Query: 88  QERDVCSY----NTMISGFTKGGSLEQA-RNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
            + D+ S     N +I+ + K G +E+A + +FD M  +   SW A++ GY + + P +A
Sbjct: 235 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKA 294

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           LDLY  M +      + FT+ S+L A S ++ L  G+EIHG+ +R G   D  +  +L  
Sbjct: 295 LDLYLQMTD-SGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLS 353

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y  CG    A+ +FD M  R +VSW  MI  Y Q G  +E   LF +++  GI+P    
Sbjct: 354 LYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIA 413

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              V  AC+  +A  LGK++H +  +       F +S+++ MY+K G +  S+++F+ + 
Sbjct: 414 IMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR 473

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D+ SW  +IAGY  +G   +ALE FE +L+ G +PD   F G+L AC+HAGLV+ GL+
Sbjct: 474 EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLE 533

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+ +   H +    +HY C+VD+L R+GR  +A  +I +MP  PD  +W+SLL  CRIH
Sbjct: 534 YFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIH 593

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           GNL L ++ A  L E+EPE P  YV ++N++A +
Sbjct: 594 GNLGLGEKVANKLLELEPEKPENYVLISNLFAGS 627



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 220/465 (47%), Gaps = 46/465 (9%)

Query: 2   IDILCNQRRLKEALQILHQISH-------PSPSIYSSLIQFCRQNRALEEGKKVHSHLKS 54
           I  LC    LKEAL  L + S                L+Q C Q + +E G+++H  + +
Sbjct: 74  IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSA 133

Query: 55  SGFKPGVFISNC-LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           S      F+ N  ++ MY+ CG+ SD+                               R 
Sbjct: 134 STQFCNDFVLNTRIITMYSMCGSPSDS-------------------------------RM 162

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           +FD++ +++ F W A++S Y R     +A+ ++  + +      + FTL  V+ A + + 
Sbjct: 163 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 222

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA-RQIFDKMVDRDVVSWTAMI 232
            L LG+ IHG   +    SD  V +AL  MYGKCG + EA +++FD M  + V SW A++
Sbjct: 223 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y Q     +   L+ ++  SG+ P+ FT   +L AC+   +   G+++HG+  R G  
Sbjct: 283 CGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLA 342

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              F   +L+ +Y  CG    ++ +F+GM    LVSW  +IAGY+QNG+PD+A+  F  +
Sbjct: 343 VDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM 402

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           L  G QP  I  + V  AC+    +  G +  H    K  LT      + I+D+ A+ G 
Sbjct: 403 LSDGIQPYEIAIMCVCGACSQLSALRLG-KELHCFALKAHLTEDIFVSSSIIDMYAKGGC 461

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
              ++ +  ++  K D   W  ++ G  IHG     K A E LFE
Sbjct: 462 IGLSQRIFDRLREK-DVASWNVIIAGYGIHGR---GKEALE-LFE 501


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 248/461 (53%), Gaps = 46/461 (9%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           + S   +++  C     +++G+ +HS +  SGF+  + ++N ++ MY +CG         
Sbjct: 246 TKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCG--------- 296

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEA 142
                                 ++E+AR +FD M +  RD  SW  M+S YV  ++  +A
Sbjct: 297 ----------------------AVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDA 334

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + LY+ MQ      ++K T  S+LSA S+ + + LG+ +H  I+    + + +V +AL  
Sbjct: 335 IQLYQRMQ----LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVS 390

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS---ELIKSG---- 255
           MY KCGS  EAR +FDKM  R ++SWT +I  Y +     E   LF    EL K+G    
Sbjct: 391 MYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQR 450

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           ++P+A  F  +LNACAD +A E GK V       G        +A+V++Y KCG +E  +
Sbjct: 451 VKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGR 510

Query: 316 KVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           ++F+G+  RPD+  W ++IA YAQ G   +AL+ F  +   G +PD   FV +L AC+H 
Sbjct: 511 RIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHT 570

Query: 375 GLVDKGLQYFHSIK-EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           GL D+G  YF S+  E   +T T  H+ C+ DLL R GR  EAE+ + K+P+KPD   W 
Sbjct: 571 GLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWT 630

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           SLL  CR H +L  AK  A  L  +EP     YV ++NIYA
Sbjct: 631 SLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYA 671



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 212/439 (48%), Gaps = 48/439 (10%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KE L+ L ++      P    + + +  C    +L +G ++H  +  S  +    +SN L
Sbjct: 127 KETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNAL 186

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L+MY KCG++S A+ +F +M                     E+ RN+          SW+
Sbjct: 187 LNMYKKCGSLSHAKRVFAKM---------------------ERTRNV---------ISWS 216

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            M   +  +    EAL  +R M       + K  + ++LSA S+   ++ G+ IH  I  
Sbjct: 217 IMAGAHALHGNVWEALRHFRFML-LLGIKATKSAMVTILSACSSPALVQDGRLIHSCIAL 275

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGF 245
           +GF+S+ +V +A+  MYG+CG++ EAR++FD M +  RDVVSW  M+  Y    R ++  
Sbjct: 276 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAI 335

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            L+  +    +R +  T+  +L+AC+      LG+ +H  +     +      +ALV MY
Sbjct: 336 QLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 392

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL---KSGT----Q 358
           +KCG+   ++ VF+ M +  ++SWT++I+ Y +  +  +A   F+ +L   K+G+    +
Sbjct: 393 AKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVK 452

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD + FV +L AC     +++G +         GL+        +V+L  + G   E   
Sbjct: 453 PDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRR 511

Query: 419 VISKMPMKPDKFLWASLLG 437
           +   +  +PD  LW +++ 
Sbjct: 512 IFDGVCSRPDVQLWNAMIA 530



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 197/421 (46%), Gaps = 50/421 (11%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAK 73
           L +  Q      + Y+ L+Q C + +AL EG+K+HS        PG + + N ++ MYA 
Sbjct: 32  LDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAH 91

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
           C +  DA+  FD ++                               QR+ +SWT +++ +
Sbjct: 92  CDSPGDAKAAFDALE-------------------------------QRNLYSWTGLVAAF 120

Query: 134 VRYNQPIEALD-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
               Q  E L  L RM Q+      +  T  + L +    + LR G  IH  ++ +  + 
Sbjct: 121 AISGQSKETLRALERMRQD--GVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEI 178

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           D  V +AL +MY KCGS++ A+++F KM   R+V+SW+ M G +   G   E    F  +
Sbjct: 179 DPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFM 238

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           +  GI+        +L+AC+  A  + G+ +H  +   G++     A+A++ MY +CG V
Sbjct: 239 LLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAV 298

Query: 312 ENSKKVFNGMPRP--DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           E ++KVF+ M     D+VSW  +++ Y  N   D+  +  +L  +   + D + +V +L+
Sbjct: 299 EEARKVFDAMDEALRDVVSWNIMLSAYVHN---DRGKDAIQLYQRMQLRADKVTYVSLLS 355

Query: 370 ACTHAGLVDKGL----QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           AC+ A  V  G     Q  +   EK+ +   A     +V + A+ G   EA  V  KM  
Sbjct: 356 ACSSAEDVGLGRVLHKQIVNDELEKNVIVGNA-----LVSMYAKCGSHTEARAVFDKMEQ 410

Query: 426 K 426
           +
Sbjct: 411 R 411



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 38/354 (10%)

Query: 10  RLKEALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R K+A+Q+  ++   +  + Y SL+  C     +  G+ +H  + +   +  V + N L+
Sbjct: 330 RGKDAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALV 389

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MYAKCG+ ++A+ +FD+M++R + S+ T+IS + +   + +A +LF +M + +      
Sbjct: 390 SMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK----- 444

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
             +G  +  +P                  +     ++L+A + +  L  GK +       
Sbjct: 445 --NGSSQRVKP------------------DALAFVTILNACADVSALEQGKMVSEQAASC 484

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFAL 247
           G  SD+ V +A+ ++YGKCG I E R+IFD +  R DV  W AMI  Y Q G+  E   L
Sbjct: 485 GLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKL 544

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH---- 303
           F  +   G+RP++F+F  +L AC+    E+ GK     MT      Y      + H    
Sbjct: 545 FWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMT----TEYRNVTRTIQHFGCV 600

Query: 304 --MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
             +  + G ++ +++    +P +PD V+WTSL+A    +    +A E    LL+
Sbjct: 601 ADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLR 654


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 268/478 (56%), Gaps = 4/478 (0%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D  C    L  A ++  ++ H     Y++++  C +  +  E   + + ++  G     
Sbjct: 182 LDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATR 241

Query: 62  FISNCLLDMYAKCGNI---SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           F  + +L +    G++        L       +V   N+++  ++K   L++ + LF EM
Sbjct: 242 FTFSTVLTVATGVGDLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEM 301

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
            +RDN S+  MI+GY         L L+R MQ+           +S+LS   ++  + +G
Sbjct: 302 IERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFD-RQALPYASLLSVAGSVPHIGIG 360

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K+IH  ++  G  S+++V +AL DMY KCG ++ A+  F    D+  VSWTAMI    Q 
Sbjct: 361 KQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQN 420

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G++EE   LF  + ++G+ P+  TF+  + A ++ A   LG+Q+H Y+ R G+    F+ 
Sbjct: 421 GQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSG 480

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           SAL+ MY+KCG ++ + + F+ MP  + +SW ++I+ YA  G    A++ FE +L  G +
Sbjct: 481 SALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFK 540

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD + F+ VL+AC+H GL ++ ++YF  ++ ++G++   +HY+C++D L R GRF + ++
Sbjct: 541 PDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQE 600

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++ +MP + D  +W+S+L  CR HGN DLA+ AAE LF +   +   YV ++NI+A A
Sbjct: 601 MLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKA 658



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 201/434 (46%), Gaps = 54/434 (12%)

Query: 50  SHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD-VCSYNTMISGFTKGGSL 108
           + +  +GF P  +  N LL      G ++ A+ LFD+M  R+   S N M+SG+++ G L
Sbjct: 23  ARMVKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQL 82

Query: 109 EQARNLFDEMPQ--RDNFSWTAMISGYVRY--NQPIEALDLYRMMQNFENSVSNKFTLSS 164
             A +LF   P   RD  +WT MI  +      +  +A+ L+R M   E    ++ T+++
Sbjct: 83  SAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLR-EGVAPDRVTVAT 141

Query: 165 VLS---AVSAIQCLRLGKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           VL+   A        +   +H + ++ G   S+ VV + L D Y K G +  AR++F +M
Sbjct: 142 VLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEM 201

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             RD V++ AM+    +EG   E   LF+ + + G+    FTF+ VL          LG+
Sbjct: 202 PHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGR 261

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN- 339
           QVHG + R       F  ++L+  YSKC  ++  KK+F+ M   D VS+  +IAGYA N 
Sbjct: 262 QVHGLVAR-ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNR 320

Query: 340 ---------------GMPDKALEYFELLLKSGTQPD---------HIVFVG--------- 366
                              +AL Y  LL  +G+ P           +V +G         
Sbjct: 321 CASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGN 380

Query: 367 -VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP- 424
            ++   +  G++D     F +  +K G+++TA    C+     ++G+  EA  +   M  
Sbjct: 381 ALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCV-----QNGQQEEALQLFCGMRR 435

Query: 425 --MKPDKFLWASLL 436
             + PD+  ++S +
Sbjct: 436 AGLSPDRATFSSTI 449


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 41/463 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP----------GVFISNCLLDMYAK 73
           P+ S   +L+    Q  AL +G  VH++   +   P          GV +   LLDMYAK
Sbjct: 111 PNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAK 170

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
           CG                               SL  AR +FD MP R+  +W+A+I G+
Sbjct: 171 CG-------------------------------SLLYARRVFDAMPARNEVTWSALIGGF 199

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           V  ++  +A  L++ M        +  +++S L A +++  LR+G+++H  + ++G  +D
Sbjct: 200 VLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHAD 259

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
               ++L  MY K G I++A  +FD+M  +D VS++A++  Y Q GR EE F +F ++  
Sbjct: 260 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 319

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             + P+A T   ++ AC+  AA + G+  HG +   G    +   +AL+ MY+KCG ++ 
Sbjct: 320 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 379

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           S++VFN MP  D+VSW ++IAGY  +G+  +A   F  +   G  PD + F+ +L+AC+H
Sbjct: 380 SRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSH 439

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           +GLV +G  +FH +   +GLT   +HY C+VDLL+R G   EA + I  MP++ D  +W 
Sbjct: 440 SGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 499

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LLG CR++ N+DL K+ +  + E+ PE    +V ++NIY++A
Sbjct: 500 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAA 542



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 54/442 (12%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+ +H H   +G +  +F+S  LLDMY KC  + DA  +F  M  RD+ ++N M++G+  
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G    A                                 L  M         N  TL +
Sbjct: 89  HGMYHHA------------------------------VAHLLSMQMQMHRLRPNASTLVA 118

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDE----------VVWSALSDMYGKCGSINEAR 214
           +L  ++    L  G  +H Y +R     +           ++ +AL DMY KCGS+  AR
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG---IRPNAFTFAGVLNACA 271
           ++FD M  R+ V+W+A+IG +    R  + F LF  ++  G   + P   + A  L ACA
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACA 236

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                 +G+Q+H  + + G      A ++L+ MY+K G ++ +  +F+ M   D VS+++
Sbjct: 237 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 296

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           L++GY QNG  ++A   F+ +     +PD    V ++ AC+H   +  G     S+  + 
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR- 355

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           GL         ++D+ A+ GR   +  V + MP + D   W +++ G  IHG   L K A
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEA 411

Query: 452 AEALFEIE----PENPATYVTM 469
                E+     P +  T++ +
Sbjct: 412 TALFLEMNNLGFPPDGVTFICL 433



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 140/333 (42%), Gaps = 56/333 (16%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N +T    L A SA+     G+ IH + +  G  +D  V +AL DMY KC  + +A  IF
Sbjct: 9   NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFA--LFSELIKSGIRPNAFTFAGVLNACADHAA 275
             M  RD+V+W AM+  Y   G      A  L  ++    +RPNA T   +L   A   A
Sbjct: 69  ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 128

Query: 276 EELGKQVHGYMTRIGYDPYS----------FAASALVHMYSKCGNVENSKKVFNGMPRPD 325
              G  VH Y  R    P               +AL+ MY+KCG++  +++VF+ MP  +
Sbjct: 129 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 188

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFE----------------------------------- 350
            V+W++LI G+       +A   F+                                   
Sbjct: 189 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 248

Query: 351 -LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
            LL KSG   D      +L+    AGL+D+ +  F  +  K  ++Y+A     +V    +
Sbjct: 249 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA-----LVSGYVQ 303

Query: 410 SGRFHEAEDVISKMP---MKPDKFLWASLLGGC 439
           +GR  EA  V  KM    ++PD     SL+  C
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 18/202 (8%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           +++  + PN +TF   L AC+  A    G+ +H +    G     F ++AL+ MY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-----PDHIVFV 365
           + ++  +F  MP  DLV+W +++AGYA +GM   A+ +   LL    Q     P+    V
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAH---LLSMQMQMHRLRPNASTLV 117

Query: 366 GVLTACTHAGLVDKGLQ-YFHSIK--------EKHGLTYTADHYACIVDLLARSGRFHEA 416
            +L      G + +G   + + I+         K  LT        ++D+ A+ G    A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 417 EDVISKMPMKPDKFLWASLLGG 438
             V   MP + ++  W++L+GG
Sbjct: 178 RRVFDAMPAR-NEVTWSALIGG 198


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/468 (31%), Positives = 268/468 (57%), Gaps = 36/468 (7%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L ++ +I  Q+     HP+   Y  +++ C     +E G+++HS    +GF+  +++S  
Sbjct: 327 LAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMY                               +K G L++AR + + + +RD  SW
Sbjct: 387 LIDMY-------------------------------SKYGCLDKARKILEMLEKRDVVSW 415

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T+MI+GYV+++   EAL  ++ MQ+      +   L+S  SA + I+ +R G +IH  + 
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDC-GVWPDNIGLASAASACAGIKAMRQGLQIHARVY 474

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +G+ +D  +W+ L ++Y +CG   EA  +F ++  +D ++W  +I  + Q    ++   
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALM 534

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F ++ ++G + N FTF   ++A A+ A  + GKQVHG   + G+   +  A+AL+ +Y 
Sbjct: 535 VFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYG 594

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E++K +F+ M   + VSW ++I   +Q+G   +AL+ F+ + + G +P+ + F+G
Sbjct: 595 KCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIG 654

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL AC+H GLV++GL YF S+   +GL    DHYAC+VD+L R+G+   A   + +MP+ 
Sbjct: 655 VLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPIT 714

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +  +W +LL  C++H N+++ + AA+ L E+EP + A+YV ++N YA
Sbjct: 715 ANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYA 762



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 214/431 (49%), Gaps = 38/431 (8%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA ++  Q+      P+P + SS++  C + +   +G+ +H+ +    F    F+ N L
Sbjct: 126 KEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNAL 185

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y   G+   A+ +F +M   D  ++NT+ISG  + G  E A  +FDEM         
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM--------- 236

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
             +SG     +P                  +  T++S+L+A +++  L+ GK++H Y+++
Sbjct: 237 -QLSGL----RP------------------DCVTVASLLAACASVGDLQKGKQLHSYLLK 273

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G   D +   +L D+Y KCG I  A  IF+     +VV W  M+  Y Q     + F +
Sbjct: 274 AGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEI 333

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F ++  +GI PN FT+  +L  C      ELG+Q+H    + G++   + +  L+ MYSK
Sbjct: 334 FGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSK 393

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G ++ ++K+   + + D+VSWTS+IAGY Q+   ++AL  F+ +   G  PD+I     
Sbjct: 394 YGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASA 453

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
            +AC     + +GLQ  H+     G       +  +V+L AR GR  EA  +  ++  K 
Sbjct: 454 ASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK- 511

Query: 428 DKFLWASLLGG 438
           D+  W  L+ G
Sbjct: 512 DEITWNGLISG 522



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 177/345 (51%), Gaps = 7/345 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I  + K G + QAR +F E+  RD+ SW AM+SGY +     EA  LY  M ++   
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQM-HWTAV 140

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           +   + LSSVLSA +  +    G+ IH  + +  F S+  V +AL  +Y   GS   A +
Sbjct: 141 IPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAER 200

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F  M+  D V++  +I  + Q G  E    +F E+  SG+RP+  T A +L ACA    
Sbjct: 201 VFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + GKQ+H Y+ + G         +L+ +Y KCG++E +  +FN   R ++V W  ++  
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q     K+ E F  +  +G  P+   +  +L  CT  G ++ G Q  HS+  K+G  +
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ-IHSLSIKNG--F 377

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +D Y    ++D+ ++ G   +A  ++ +M  K D   W S++ G
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKIL-EMLEKRDVVSWTSMIAG 421



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 11/287 (3%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           EIH   +  G  +D ++ + L D+Y K G + +ARQ+F ++  RD VSW AM+  Y Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
             +E F L+S++  + + P  +  + VL+AC        G+ +H  + +  +   +F  +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ +Y   G+ + +++VF  M   D V++ +LI+G+AQ G  + AL+ F+ +  SG +P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D +    +L AC   G + KG Q  HS   K G+++       ++DL  + G    A D+
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNL-DLAKRAAEALFEIEPENPAT 465
            + +  + +  LW  +L     +G + DLAK      FEI  +  AT
Sbjct: 303 FN-LGDRTNVVLWNLMLVA---YGQISDLAKS-----FEIFGQMQAT 340



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 69/260 (26%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRA---------------------------- 41
           R +EA  +  +I H     ++ LI    Q+R                             
Sbjct: 497 RSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAIS 556

Query: 42  -------LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCS 94
                  +++GK+VH     +G      ++N L+ +Y KCG+I DA+ +F EM  R+  S
Sbjct: 557 ALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS 616

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
           +NT+I+  ++ G   +A +LFD+M Q                                E 
Sbjct: 617 WNTIITSCSQHGRGLEALDLFDQMKQ--------------------------------EG 644

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEA 213
              N  T   VL+A S +  +  G      +    G +     ++ + D+ G+ G ++ A
Sbjct: 645 LKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRA 704

Query: 214 RQIFDKM-VDRDVVSWTAMI 232
           R+  D+M +  + + W  ++
Sbjct: 705 RRFVDEMPITANAMIWRTLL 724


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 239/450 (53%), Gaps = 47/450 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  +++ C     L EG  V       GF   VF+ N L+ MY +CG    A+ +FD   
Sbjct: 113 YPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFS 172

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E+D+ S+N+M+ G+   G +E A+N+FDEMP+RD  SW+ MI GY +             
Sbjct: 173 EKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGK------------- 219

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS----DEVVWSALSDMY 204
                                      ++G+       R  FDS    D V W+++ D Y
Sbjct: 220 ---------------------------KMGEVNRA---RVFFDSMPTRDLVSWNSMIDGY 249

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G +  AR+IFBKM+ ++V+SW+ MI  Y      +E   LF +++  GI+P+  +  
Sbjct: 250 AKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVV 309

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           G ++AC+   A + G+ +H YM R          +ALV MY KCG+ + ++ +FN MP  
Sbjct: 310 GAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPER 369

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           ++VSW  +I G   NG   +ALE F  +       D ++F+GVL AC+HA LV +GL  F
Sbjct: 370 NVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIF 429

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           + +K  + L    +HY C+VDLL R+G+  + +++I  MPMKP+  LW SLL  CRIH N
Sbjct: 430 NQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQN 489

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYA 474
           + LA+   E L E++ ++   YV M+NIYA
Sbjct: 490 VTLAEIVVERLAELKADDSGVYVLMSNIYA 519



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 10/264 (3%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSD-MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +IH  ++ T   SD    S L D +  K  ++N A  +F ++   +      M+  Y + 
Sbjct: 29  QIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTES 88

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              E     ++E+ K G+  + +T+  VL AC        G  V G   + G+    F  
Sbjct: 89  STPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVV 148

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + L+ MY +CG    ++ VF+G    DLVSW S++ GY   G  + A   F+ + +    
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVV 208

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
              I+  G        G V++   +F S+  +  +++ +     ++D  A+ G    A +
Sbjct: 209 SWSIMIDGY---GKKMGEVNRARVFFDSMPTRDLVSWNS-----MIDGYAKVGEMEVARE 260

Query: 419 VISKMPMKPDKFLWASLLGGCRIH 442
           +  KM ++ +   W+ ++ G   H
Sbjct: 261 IFBKM-LQKNVISWSIMIDGYAXH 283



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 2   IDILCNQRRLKEAL----QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID     R  KEAL    Q+L Q   P        +  C Q  AL++G+ +H ++K +  
Sbjct: 277 IDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRM 336

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
              + +   L+DMY KCG+  +A+ +F+ M ER+V S+N MI G    G  ++A   F +
Sbjct: 337 LLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQ 396

Query: 118 MPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           M       D+  +  ++      N   E L ++  M+
Sbjct: 397 MEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMK 433


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 249/446 (55%), Gaps = 53/446 (11%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C  +  L  GK VHS    S F+  +  SN LLDMY+KC                
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC---------------- 299

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A  +F++M +R+  SWT+MI+GY R  +   A+ L + M+
Sbjct: 300 ---------------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    +   ++S+L A +    L  GK++H YI     +S+  V +AL DMY KCGS+
Sbjct: 345 K-EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSM 403

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A  +F  MV +D++SW  MIG                      ++P++ T A VL AC
Sbjct: 404 EAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVLPAC 442

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  +A E GK++HGY+ R GY      A+ALV +Y KCG +  ++ +F+ +P  DLVSWT
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +IAGY  +G  ++A+  F  +  +G +PD + F+ +L AC+H+GL+++G ++F+ +K  
Sbjct: 503 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             +    +HYAC+VDLL+R+G   +A + I  +P+ PD  +W +LL GCR + +++LA++
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEK 622

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 623 VAERVFELEPENSGYYVLLANIYAEA 648



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 225/467 (48%), Gaps = 58/467 (12%)

Query: 5   LCNQRRLKEALQI--LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    L+ A+++  + + S      YSS++Q C   ++  +GKKVHS +KS+       
Sbjct: 76  FCQLGDLENAMELICMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEA 135

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL-------------- 108
           +   L+  YA CG++ + + +FD M++++V  +N M+S + K G                
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 109 ------EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
                 E A  LFD++  RD  SW +MISGYV        L +Y+ M      V +  T+
Sbjct: 196 IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATI 254

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
            SVL   +    L LGK +H   +++ F+      + L DMY KCG ++ A ++F+KM +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R+VVSWT+MI  Y ++GR +    L  ++ K G++ +      +L+ACA   + + GK V
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H Y+     +   F  +AL+ MY+KCG++E +  VF+ M   D++SW ++I         
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG-------- 426

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTAD 398
                  EL      +PD      VL AC     +++G       KE HG      Y++D
Sbjct: 427 -------EL------KPDSRTMACVLPACASLSALERG-------KEIHGYILRNGYSSD 466

Query: 399 HYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +    +VDL  + G    A  +   +P K D   W  ++ G  +HG
Sbjct: 467 RHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHG 512


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 231/380 (60%), Gaps = 1/380 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++++ + K G +  A ++F+   +R++ +W+AMI+GY +  +   A+ ++  M      
Sbjct: 259 NSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHA-AGF 317

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
              +FT   VL+A S +  L +GK+ HG +++ GF+    V SAL DMY KCG I +A++
Sbjct: 318 TPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKE 377

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            FD++ + D+V WTAM+  + Q G  EE   L++ + K GI P+  T A  L ACA  AA
Sbjct: 378 GFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAA 437

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            E GKQ+H  + + G    +   SAL  MYSKCGN+E+   VF  +P  D+++W S+I+G
Sbjct: 438 LEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISG 497

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           ++QNG  + AL+ FE +   GT PD+I F+ +L AC+H GLVD+G +YF  + + +GLT 
Sbjct: 498 FSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTP 557

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             DHYAC+VD+L+R+G   EA+D I  + +     LW  +LG CR   + D+   A E L
Sbjct: 558 RLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERL 617

Query: 456 FEIEPENPATYVTMANIYAS 475
            E+   + + Y+ ++NIYAS
Sbjct: 618 MELGTRDSSAYILLSNIYAS 637



 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 196/347 (56%), Gaps = 4/347 (1%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           VC+  ++++ + K G +  AR +FD MPQR++FSW+ M++GY       EA DL+R+M  
Sbjct: 155 VCT--SLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLE 212

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
              S  ++F  ++VLSAVS    L +G+++HG I++ G      V ++L  MY K G + 
Sbjct: 213 ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMG 272

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            A  +F+   +R+ ++W+AMI  Y Q G  +   ++FS++  +G  P  FTF GVLNA +
Sbjct: 273 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 332

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           D  A  +GKQ HG M ++G++   +  SALV MY+KCG + ++K+ F+ +   D+V WT+
Sbjct: 333 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 392

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +++G+ QNG  ++AL  +  + K G  P        L AC     ++ G Q  H+   K+
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ-LHTQIVKY 451

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           GL   A   + +  + ++ G   +   V  ++P + D   W S++ G
Sbjct: 452 GLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR-DVIAWNSIISG 497



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 33/276 (11%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  GK+ H  +   GF+  +++ + L+DMYAKCG I+DA+  FD++ E D+  +  M+S
Sbjct: 336 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS 395

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G  + G  E+A  L+  M +                                E  + +K 
Sbjct: 396 GHVQNGEHEEALTLYARMDK--------------------------------EGIIPSKS 423

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T++S L A + I  L  GK++H  I++ G      V SALS MY KCG++ +   +F ++
Sbjct: 424 TIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            DRDV++W ++I  + Q G       LF E+   G  P+  TF  +L AC+     + G 
Sbjct: 484 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 543

Query: 281 QVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSK 315
           +    MT+  G  P     + +V + S+ G ++ +K
Sbjct: 544 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAK 579



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 34/212 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS S  +S ++ C    ALE GK++H+ +   G   G  + + L  MY+KCGN+ D  ++
Sbjct: 420 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  + +RDV ++N++ISGF++ G    A +LF+EM                         
Sbjct: 480 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM------------------------- 514

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSD 202
                    E ++ +  T  ++L A S +  +  G E    + +  G       ++ + D
Sbjct: 515 -------KMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVD 567

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           +  + G + EA+   + + +D     W  ++G
Sbjct: 568 ILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 599



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 134/285 (47%), Gaps = 16/285 (5%)

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS--INEARQIFDKM--VDRDVVSWT 229
           C R G+ +H + +++G  S   V ++L + Y       +  A  +FD +    RDV SW 
Sbjct: 27  CPRHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWN 86

Query: 230 AMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           +++       R  +  + F  ++ S  + P+  +FA    A A  A+   G   H    +
Sbjct: 87  SLLNP-LSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACK 145

Query: 289 IGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           I     + +  ++L++MY K G V +++++F+GMP+ +  SW++++AGYA     ++A +
Sbjct: 146 IPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFD 205

Query: 348 YFELLLKS-GTQPDHIVFVGVLTACTHAGLVDKGL---QYFHSIKEKHGLTYTADHYACI 403
            F L+L+   ++    V   VL+A +    V  GL   +  H +  K GL         +
Sbjct: 206 LFRLMLEECPSEKSEFVATAVLSAVS----VPLGLLMGEQMHGLIVKDGLLDFVSVENSL 261

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           V + A++G    A  V      + +   W++++ G   +G  D A
Sbjct: 262 VTMYAKAGCMGAAFHVFES-SRERNSITWSAMITGYAQNGEADSA 305


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 266/467 (56%), Gaps = 5/467 (1%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           A ++  +IS      ++ +I    +N    E  +  S ++ +GFKP  F    +L     
Sbjct: 100 AREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLG 159

Query: 74  CGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
             N    +T+         ERD+     ++  +T+ G  + A   F +MP+ D   W+ M
Sbjct: 160 LQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFM 219

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           IS + +  Q  +AL+++  M+     + N+FT SSVL A + I+ L L K IHG+ ++ G
Sbjct: 220 ISRFAQSGQSEKALEIFCQMRR-AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAG 278

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
             +D  V +AL   Y KCG I ++ ++F+ + DR+ VSW  +I  Y Q G  E   +LFS
Sbjct: 279 LSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFS 338

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            +++  ++    T++ +L ACA  AA ELG QVH    +  Y       +AL+ MY+KCG
Sbjct: 339 NMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCG 398

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           ++++++ +F+ +   D VSW ++I GY+ +G+  +A++ F L+ ++  +PD + FVGVL+
Sbjct: 399 SIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLS 458

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC++ G +D+G QYF S+K+ +G+    +HY C+V L+ RSG   +A   I  +P +P  
Sbjct: 459 ACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSV 518

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +W +LLG C IH +++L + +A+ + E+EP + A++V ++NIYA A
Sbjct: 519 MIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARA 565



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 208/427 (48%), Gaps = 35/427 (8%)

Query: 18  LHQISHP-SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           LH   H  +P +++++++        E G+ VH  +   G+    FI   L+D Y+  G 
Sbjct: 37  LHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGC 96

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           +S A+ +FDE+  +D+ S+  MI+ + +     +A   F +M           ++G+   
Sbjct: 97  VSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMR----------VAGF--- 143

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
            +P                  N FT + VL A   +Q    GK +H  +++T ++ D  V
Sbjct: 144 -KP------------------NNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYV 184

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
              L ++Y +CG  ++A + F  M   DV+ W+ MI R+ Q G+ E+   +F ++ ++ +
Sbjct: 185 GVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFV 244

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
            PN FTF+ VL A AD  + +L K +HG+  + G     F ++AL+  Y+KCG +E S +
Sbjct: 245 IPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSME 304

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F  +   + VSW ++I  Y Q G  ++AL  F  +L+   Q   + +  +L AC     
Sbjct: 305 LFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAA 364

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ GLQ  H +  K            ++D+ A+ G   +A  +   + ++ DK  W +++
Sbjct: 365 LELGLQ-VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLR-DKVSWNAII 422

Query: 437 GGCRIHG 443
            G  +HG
Sbjct: 423 CGYSMHG 429



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 151/257 (58%), Gaps = 1/257 (0%)

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           +FDEMP+R+  S+  +I GY + N+ IEA +L+  +   E    N F  ++VL  + +++
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHG-EGHELNPFVFTTVLKLLVSME 60

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
              LG+ +HG +++ G+ S+  + +AL D Y   G ++ AR++FD++  +D+VSWT MI 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            Y +     E    FS++  +G +PN FTFAGVL AC      + GK VH  + +  Y+ 
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             +    L+ +Y++CG+ +++ + F  MP+ D++ W+ +I+ +AQ+G  +KALE F  + 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 354 KSGTQPDHIVFVGVLTA 370
           ++   P+   F  VL A
Sbjct: 241 RAFVIPNQFTFSSVLQA 257



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 167/337 (49%), Gaps = 43/337 (12%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           A++I C  RR   A  I      P+   +SS++Q      +L+  K +H H   +G    
Sbjct: 232 ALEIFCQMRR---AFVI------PNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTD 282

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           VF+SN L+  YAKCG I  +  LF+ + +R+  S+NT+I  + + G  E+A +LF  M  
Sbjct: 283 VFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNM-- 340

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                        +RY   ++A ++               T SS+L A + +  L LG +
Sbjct: 341 -------------LRYQ--VQATEV---------------TYSSILRACATLAALELGLQ 370

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H    +T +  D  V +AL DMY KCGSI +AR +FD +  RD VSW A+I  Y   G 
Sbjct: 371 VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGL 430

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAAS 299
             E   +F+ + ++  +P+  TF GVL+AC++    + GKQ    M +  G +P     +
Sbjct: 431 GVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYT 490

Query: 300 ALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            +V +  + GN++ + K    +P  P ++ W +L+  
Sbjct: 491 CMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGA 527


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 258/451 (57%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y  +++ C   R ++ G+++HS    +GF+  +++S  L+DMY+K G        
Sbjct: 343 PNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG-------- 394

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   LE+AR + + + ++D  SWT+MI+GYV++    +AL
Sbjct: 395 -----------------------WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ MQ       N   L+S +S  + I  +R G +IH  I  +G+  D  +W+AL ++
Sbjct: 432 AAFKEMQKCGIWPDN-IGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNL 490

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG I EA   F++M  +D ++   ++  + Q G  EE   +F  + +SG++ N FTF
Sbjct: 491 YARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L+A A+ A  + GKQ+H  + + G+   +   +AL+ +Y KCG+ E++K  F+ M  
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + VSW ++I   +Q+G   +AL+ F+ + K G +P+ + F+GVL AC+H GLV++GL Y
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+ +++G+    DHYAC++D+  R+G+   A+  I +MP+  D  +W +LL  C++H 
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHK 730

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           N+++ + AA+ L E+EP + A+YV ++N YA
Sbjct: 731 NIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 205/419 (48%), Gaps = 37/419 (8%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +  Q+      P+P + SS++  C +     +G+ +H+     GF   +F+ N +
Sbjct: 125 EEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAV 184

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y +CG                               S   A  +F +MP RD  ++ 
Sbjct: 185 ITLYLRCG-------------------------------SFRLAERVFCDMPHRDTVTFN 213

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            +ISG+ +      AL+++  MQ F     +  T+SS+L+A +++  L+ G ++H Y+ +
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQ-FSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK 272

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G  SD ++  +L D+Y KCG +  A  IF+     +VV W  M+  + Q     + F L
Sbjct: 273 AGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFEL 332

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F ++  +GIRPN FT+  +L  C      +LG+Q+H    + G++   + +  L+ MYSK
Sbjct: 333 FCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSK 392

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            G +E +++V   +   D+VSWTS+IAGY Q+     AL  F+ + K G  PD+I     
Sbjct: 393 YGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASA 452

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           ++ C     + +GLQ  H+     G +     +  +V+L AR GR  EA     +M +K
Sbjct: 453 ISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELK 510



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 7/345 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I  ++K G +  AR +F+E+  RDN SW AM+SGY +     EAL LYR M      
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHR-AGV 139

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V   + LSSVLS+ +  +    G+ IH    + GF S+  V +A+  +Y +CGS   A +
Sbjct: 140 VPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F  M  RD V++  +I  + Q G  E    +F E+  SG+ P+  T + +L ACA    
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + G Q+H Y+ + G         +L+ +Y KCG+VE +  +FN   R ++V W  ++  
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           + Q     K+ E F  +  +G +P+   +  +L  CT    +D G Q  HS+  K G  +
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSLSVKTG--F 376

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +D Y    ++D+ ++ G   +A  V+ +M  + D   W S++ G
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAG 420



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 155/325 (47%), Gaps = 14/325 (4%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M +R   S    ++G++ +  P + L L      F +       L  +  A +   C   
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSL------FADKARQHGGLGPLDFACALRACRGN 54

Query: 178 GK------EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           G+      EIH   +  G     +V + L D+Y K G +  AR++F+++  RD VSW AM
Sbjct: 55  GRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAM 114

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +  Y Q G  EE   L+ ++ ++G+ P  +  + VL++C        G+ +H    + G+
Sbjct: 115 LSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF 174

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
               F  +A++ +Y +CG+   +++VF  MP  D V++ +LI+G+AQ G  + ALE FE 
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEE 234

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +  SG  PD +    +L AC   G + KG Q  HS   K G++        ++DL  + G
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQ-LHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 412 RFHEAEDVISKMPMKPDKFLWASLL 436
              E   VI     + +  LW  +L
Sbjct: 294 DV-ETALVIFNSSDRTNVVLWNLML 317


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 41/463 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP----------GVFISNCLLDMYAK 73
           P+ S   +L+    Q  AL +G  VH++   +   P          GV +   LLDMYAK
Sbjct: 111 PNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAK 170

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
           CG                               SL  AR +FD MP R+  +W+A+I G+
Sbjct: 171 CG-------------------------------SLLYARRVFDAMPARNEVTWSALIGGF 199

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           V  ++  +A  L++ M        +  +++S L A +++  LR+G+++H  + ++G  +D
Sbjct: 200 VLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHAD 259

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
               ++L  MY K G I++A  +FD+M  +D VS++A++  Y Q GR EE F +F ++  
Sbjct: 260 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 319

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             + P+A T   ++ AC+  AA + G+  HG +   G    +   +AL+ MY+KCG ++ 
Sbjct: 320 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 379

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           S++VFN MP  D+VSW ++IAGY  +G+  +A   F  +   G  PD + F+ +L+AC+H
Sbjct: 380 SRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSH 439

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           +GLV +G  +FH +   +GLT   +HY C+VDLL+R G   EA + I  MP++ D  +W 
Sbjct: 440 SGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 499

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LLG CR++ N+DL K+ +  + E+ PE    +V ++NIY++A
Sbjct: 500 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAA 542



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 54/442 (12%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+ +H H   +G +  +F+S  LLDMY KC  + DA  +F  M  RD+ ++N M++G+  
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G    A                                 L  M         N  TL +
Sbjct: 89  HGMYHHA------------------------------VAHLLSMQMQMHRLRPNASTLVA 118

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDE----------VVWSALSDMYGKCGSINEAR 214
           +L  ++    L  G  +H Y +R     +           ++ +AL DMY KCGS+  AR
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG---IRPNAFTFAGVLNACA 271
           ++FD M  R+ V+W+A+IG +    R  + F LF  ++  G   + P   + A  L ACA
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACA 236

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                 +G+Q+H  + + G      A ++L+ MY+K G ++ +  +F+ M   D VS+++
Sbjct: 237 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 296

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           L++GY QNG  ++A   F+ +     +PD    V ++ AC+H   +  G     S+  + 
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR- 355

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           GL         ++D+ A+ GR   +  V + MP + D   W +++ G  IHG   L K A
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEA 411

Query: 452 AEALFEIE----PENPATYVTM 469
                E+     P +  T++ +
Sbjct: 412 TALFLEMNNLGFPPDGVTFICL 433



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 140/333 (42%), Gaps = 56/333 (16%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N +T    L A SA+     G+ IH + +  G  +D  V +AL DMY KC  + +A  IF
Sbjct: 9   NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFA--LFSELIKSGIRPNAFTFAGVLNACADHAA 275
             M  RD+V+W AM+  Y   G      A  L  ++    +RPNA T   +L   A   A
Sbjct: 69  ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 128

Query: 276 EELGKQVHGYMTRIGYDPYS----------FAASALVHMYSKCGNVENSKKVFNGMPRPD 325
              G  VH Y  R    P               +AL+ MY+KCG++  +++VF+ MP  +
Sbjct: 129 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 188

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFE----------------------------------- 350
            V+W++LI G+       +A   F+                                   
Sbjct: 189 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 248

Query: 351 -LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
            LL KSG   D      +L+    AGL+D+ +  F  +  K  ++Y+A     +V    +
Sbjct: 249 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA-----LVSGYVQ 303

Query: 410 SGRFHEAEDVISKMP---MKPDKFLWASLLGGC 439
           +GR  EA  V  KM    ++PD     SL+  C
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 18/202 (8%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           +++  + PN +TF   L AC+  A    G+ +H +    G     F ++AL+ MY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-----PDHIVFV 365
           + ++  +F  MP  DLV+W +++AGYA +GM   A+ +   LL    Q     P+    V
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAH---LLSMQMQMHRLRPNASTLV 117

Query: 366 GVLTACTHAGLVDKGLQ-YFHSIK--------EKHGLTYTADHYACIVDLLARSGRFHEA 416
            +L      G + +G   + + I+         K  LT        ++D+ A+ G    A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 417 EDVISKMPMKPDKFLWASLLGG 438
             V   MP + ++  W++L+GG
Sbjct: 178 RRVFDAMPAR-NEVTWSALIGG 198


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 250/446 (56%), Gaps = 53/446 (11%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C  +  L  GK VHS    S F+  +  SN LLDMY+KC                
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKC---------------- 299

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A  +F++M +R+  SWT+MI+GY R  +   A+ L + M+
Sbjct: 300 ---------------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQME 344

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    +    +S+L A +    L  GK++H YI     +S+  V +AL DMY KCGS+
Sbjct: 345 K-EGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSM 403

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + A  +F  MV +D++SW  MIG                      ++P++ T A +L AC
Sbjct: 404 DGANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACILPAC 442

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  +A E GK++HGY+ R GY      A+ALV +Y KCG +  ++ +F+ +P  DLVSWT
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +I+GY  +G  ++A+  F  +  +G +PD + F+ +L AC+H+GL+++G ++F+ +K  
Sbjct: 503 VMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             +    +HYAC+VDLL+R+G   +A + I  +P+ PD  +W +LL GCRI+ +++LA++
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEK 622

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 623 VAERVFELEPENTGYYVLLANIYAEA 648



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 229/467 (49%), Gaps = 58/467 (12%)

Query: 5   LCNQRRLKEALQI--LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    L+ A+++  + Q S      YSS++Q C  +++L +GKKVHS +KS+       
Sbjct: 76  FCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEV 135

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL-------------- 108
           +   L+ +YA CG++ + + +FD M++++V  +N M+S + K G                
Sbjct: 136 LGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 109 ------EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
                 E A  LFD++  RD  SW +MISGYV        L++Y+ M      V +  T+
Sbjct: 196 IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDV-DLATI 254

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
            SVL   +    L LGK +H   +++ F+      + L DMY KCG ++ A ++F+KM +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R+VVSWT+MI  Y ++GR +    L  ++ K G++ +      +L+ACA   + + GK V
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDV 374

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H Y+     +   F  +AL+ MY+KCG+++ +  VF+ M   D++SW ++I         
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG-------- 426

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTAD 398
                  EL      +PD      +L AC     +++G       KE HG      Y++D
Sbjct: 427 -------EL------KPDSRTMACILPACASLSALERG-------KEIHGYILRNGYSSD 466

Query: 399 HYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +    +VDL  + G    A  +   +P K D   W  ++ G  +HG
Sbjct: 467 RHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMISGYGMHG 512



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 164/402 (40%), Gaps = 91/402 (22%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +R V  YN  I  F + G+LE                                A++L  M
Sbjct: 63  DRQVTDYNAKILHFCQLGNLEN-------------------------------AMELVCM 91

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
            Q  E       T SSVL   +  + L  GK++H  I       DEV+   L  +Y  CG
Sbjct: 92  CQKSELETK---TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCG 148

Query: 209 SINEARQI---------------------------------------------------F 217
            + E R++                                                   F
Sbjct: 149 DLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELF 208

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           DK+ DRDV+SW +MI  Y   G  E G  ++ +++  GI  +  T   VL  CA+     
Sbjct: 209 DKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLS 268

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           LGK VH    +  ++     ++ L+ MYSKCG+++ + +VF  M   ++VSWTS+IAGY 
Sbjct: 269 LGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           ++G  D A+   + + K G + D +    +L AC  +G +D G      IK  +     +
Sbjct: 329 RDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANN---MES 385

Query: 398 DHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           + + C  ++D+  + G    A  V S M +K D   W +++G
Sbjct: 386 NLFVCNALMDMYTKCGSMDGANSVFSTMVVK-DIISWNTMIG 426


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 135/355 (38%), Positives = 235/355 (66%), Gaps = 1/355 (0%)

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  SW ++I G VR     +AL  ++ M++ +  + +++TL SVL++ ++++ ++    +
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKI-DEYTLPSVLNSFASMKVMQNAISV 63

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  I++TGF++ ++V +AL DMY K G ++ A  +F KMVD+DVVSWT+++  Y   G  
Sbjct: 64  HCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSY 123

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   LF ++  SG+ P+    A VL+ACA+    + G+Q+H  + + G +      ++L
Sbjct: 124 EEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSL 183

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V MY+KCG++ ++ + F+ MP  D++SWT+LI GYAQNG    +L++++ ++ +GT+PD+
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDY 243

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           I F+G+L AC+H GL+  G  YF ++ + +G+    +HYAC++DLL RSG+  EA+ +++
Sbjct: 244 ITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLN 303

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +M + PD  +W +LL  CR+H  L+L + AA+ LFE+EP N   YV ++N+Y++A
Sbjct: 304 QMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAA 358



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 158/312 (50%), Gaps = 38/312 (12%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           PS+ +S        + ++    VH  +  +GF+    ++N L+DMYAK G +  A  +F 
Sbjct: 45  PSVLNSFASM----KVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFS 100

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
           +M ++DV S+ ++++G++  GS E+A  LF +M           ISG             
Sbjct: 101 KMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMR----------ISGV------------ 138

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
                       ++  ++SVLSA + +  +  G++IH  ++++G +S   V ++L  MY 
Sbjct: 139 ----------YPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYA 188

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KCGSI +A + FD M  RDV+SWTA+I  Y Q GR +     + ++I +G +P+  TF G
Sbjct: 189 KCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIG 248

Query: 266 VLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PR 323
           +L AC+ +     G+     M ++ G  P     + ++ +  + G +  +K + N M   
Sbjct: 249 LLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVA 308

Query: 324 PDLVSWTSLIAG 335
           PD V W +L+A 
Sbjct: 309 PDAVVWKALLAA 320



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 55/96 (57%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P     +S++  C +   ++ G+++H+ L  SG +  + + N L+ MYAKCG+I DA  
Sbjct: 139 YPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANR 198

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
            FD M  RDV S+  +I G+ + G  + +   +D+M
Sbjct: 199 AFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQM 234



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 2   IDILCNQRRLKEALQILHQ-ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL---KSSGF 57
           ID+L    +L EA  +L+Q +  P   ++ +L+  CR ++ LE G+    +L   +    
Sbjct: 286 IDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNS 345

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC 93
            P V +SN    MY+  G   DA  +   M+ R +C
Sbjct: 346 MPYVMLSN----MYSAAGKWEDAARIRRLMRSRGIC 377


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/481 (34%), Positives = 256/481 (53%), Gaps = 38/481 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I  LC    LK+A+Q+L    +P+   +  LI  C +  +L +G  VH  L  SG     
Sbjct: 50  IQSLCRGGNLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDP 109

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           +++  L++MY   G++  A  +FDE +E+ +                             
Sbjct: 110 YLATKLINMYCDLGSVDHACKVFDETREKTI----------------------------- 140

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS----AIQCLRL 177
             F W A+       ++  + L LY  M N+    SN+FT + VL A      +I  LR 
Sbjct: 141 --FVWNAIFRALAMASRGEDLLVLYGQM-NWIGIPSNRFTYTYVLKACVVSELSICPLRK 197

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GKEIH +I+R G++    V + L D+Y + G ++ A  +F  M D+++VSW+AMI  Y +
Sbjct: 198 GKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAK 257

Query: 238 EGRREEGFALFSELIKSGIR--PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                +   LF  ++       PN  T   VL ACA  AA E GK VH Y+ R G D   
Sbjct: 258 NEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTL 317

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              + L+ MY +CG +   ++VF+ M + D++SW SLI+ Y  +G+  KA++ FE ++  
Sbjct: 318 PVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINR 377

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  P +I F+ VL AC+HAGLV++    F S+  K+ +    +HYAC+VD+L R+ R  E
Sbjct: 378 GVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDE 437

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A ++I  M  KP   +W SLLG CRIH N++LA+RA+  LFE+EP+N   YV +++IYA 
Sbjct: 438 AIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAK 497

Query: 476 A 476
           +
Sbjct: 498 S 498


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 229/376 (60%), Gaps = 2/376 (0%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K G L  AR LFDEMP R+  +W A+++  V   +PIE ++ Y  ++     + N  +
Sbjct: 164 YFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRG-AGGMPNVVS 222

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           + +  +A + + CL LG++ HG++ + GFD D  V +++ D YGKC  + +AR +FD M 
Sbjct: 223 VCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMG 282

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R+ VSW +M+  Y Q G  EE F ++    ++G  P  F  + +L  CA     +LG+ 
Sbjct: 283 VRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRA 342

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    R   D   F ASALV MY KCG ++++++VF  MP+ +LV+W ++I GYA  G 
Sbjct: 343 LHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGD 402

Query: 342 PDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              AL  F E+++   T P++I  V VLTAC+  GL  +G + F ++K++ G+    +HY
Sbjct: 403 AWNALAVFDEMIMGRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHY 462

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           AC+VDLL R+G   +A ++I  MPM+P   +W +LLGGC++HG  +L + AAE LFE++P
Sbjct: 463 ACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELGRVAAEKLFELDP 522

Query: 461 ENPATYVTMANIYASA 476
           ++   +V ++N+ ASA
Sbjct: 523 QDSGNHVLLSNMLASA 538



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 181/362 (50%), Gaps = 16/362 (4%)

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI--QCLR 176
           P     S+TA ISG  ++ +P++AL  +  M        N FT  S   A ++   +C  
Sbjct: 76  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRL-GLRPNDFTFPSAFKAAASAPPRCAA 134

Query: 177 -LGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
            +G ++H   +R G+  D+  V  A  DMY K G +  AR++FD+M +R+VV+W A++  
Sbjct: 135 AVGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTN 194

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
              +GR  E    +  L  +G  PN  +     NACA      LG+Q HG++ + G+D  
Sbjct: 195 AVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKD 254

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
              ++++V  Y KC  +  ++ VF+GM   + VSW S++  YAQNG  ++A   +    +
Sbjct: 255 VSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARR 314

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +G +P   +   +LT C  AGL+   L +  H++  +  +       + +VD+  + G  
Sbjct: 315 AGEEPTDFMVSSLLTTC--AGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGI 372

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE---IEPENPATYVTMA 470
            +AE V  +MP + +   W +++GG    G+       A A+F+   +  E    Y+T+ 
Sbjct: 373 QDAEQVFFEMPQR-NLVTWNAMIGGYAHIGD----AWNALAVFDEMIMGRETAPNYITIV 427

Query: 471 NI 472
           N+
Sbjct: 428 NV 429



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 148/320 (46%), Gaps = 37/320 (11%)

Query: 26  PSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P++ S  +    C     L  G++ H  +   GF   V +SN ++D Y KC  +  A+ +
Sbjct: 218 PNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLV 277

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  R+  S+ +M+  + + G+ E+A  ++              +       +P +  
Sbjct: 278 FDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVY--------------LGARRAGEEPTD-- 321

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                           F +SS+L+  + +  L LG+ +H    R+  D++  V SAL DM
Sbjct: 322 ----------------FMVSSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDM 365

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           YGKCG I +A Q+F +M  R++V+W AMIG Y   G      A+F E+I      PN  T
Sbjct: 366 YGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYIT 425

Query: 263 FAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
              VL AC+     + G ++   M  R G +P     + +V +  + G  E + ++  GM
Sbjct: 426 IVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGM 485

Query: 322 P-RPDLVSWTSLIAGYAQNG 340
           P RP +  W +L+ G   +G
Sbjct: 486 PMRPSISVWGALLGGCKMHG 505



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 7/280 (2%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS-DEVVWSALSDMYGKCGSINEARQIFDKM 220
           L+  + A  A +  RLG+  H   +R    +    + + L ++Y K      A       
Sbjct: 16  LAGAVEAAIASRSPRLGRAAHARALRLLAPALPPFICAHLVNLYSKLDLPGAAAAALAAD 75

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD---HAAEE 277
               VVS+TA I    Q  R  +  + F+ +++ G+RPN FTF     A A      A  
Sbjct: 76  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAA 135

Query: 278 LGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           +G QVH    R GY P  +F + A + MY K G +  ++++F+ MP  ++V+W +++   
Sbjct: 136 VGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNA 195

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
             +G P + +E +  L  +G  P+ +       AC     +  G Q FH    K G    
Sbjct: 196 VLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQ-FHGFVAKCGFDKD 254

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                 +VD   +     +A  V   M ++ +   W S++
Sbjct: 255 VSVSNSMVDFYGKCRCMGKARLVFDGMGVR-NSVSWCSMV 293



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 43/229 (18%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+  + SSL+  C     L+ G+ +H+    S     +F+++ L+DMY KCG I DA+ 
Sbjct: 318 EPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQ 377

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F EM +R++ ++N MI G+   G    A  +FDE           MI G          
Sbjct: 378 VFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDE-----------MIMG---------- 416

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM------RTGFDSDEVV 196
                       +  N  T+ +VL+A     C R G    GY +      R G +     
Sbjct: 417 ----------RETAPNYITIVNVLTA-----CSRGGLTKEGYELFQTMKQRFGIEPRIEH 461

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEG 244
           ++ + D+ G+ G   +A +I   M  R  +S W A++G     G+ E G
Sbjct: 462 YACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELG 510


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 263/473 (55%), Gaps = 38/473 (8%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           LK +L +  ++     +P+   +S+ ++ C    ALE+G ++H      GF+  V + N 
Sbjct: 459 LKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNS 518

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMY+KCG I+                               +A  +F  +  R   SW
Sbjct: 519 LVDMYSKCGRIN-------------------------------EAEKVFRRIVDRSLISW 547

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFE-NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
            AMI+G+V      +ALD + MMQ        ++FTL+S+L A S+   +  GK+IHG++
Sbjct: 548 NAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFL 607

Query: 186 MRTGFD--SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           +R+GF   S   +  +L D+Y KCG +  AR+ FD++ ++ ++SW+++I  Y QEG   E
Sbjct: 608 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 667

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF  L +   + ++F  + ++   AD A    GKQ+     ++     +   +++V 
Sbjct: 668 AMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVD 727

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY KCG V+ ++K F  M   D++SWT +I GY ++G+  K++  F  +L+   +PD + 
Sbjct: 728 MYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVC 787

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           ++ VL+AC+H+G++ +G + F  + E HG+    +HYAC+VDLL R+GR  EA+ +I  M
Sbjct: 788 YLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM 847

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P+KP+  +W +LL  CR+HG+++L K   + L  I+ +NPA YV M+N+Y  A
Sbjct: 848 PIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQA 900



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 202/411 (49%), Gaps = 48/411 (11%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +  SN L+DMY KC     A  +FD M ER+V S++ ++SG    G L+ + +LF EM +
Sbjct: 412 LITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGR 471

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +  +                                 N+FT S+ L A   +  L  G +
Sbjct: 472 QGIY--------------------------------PNEFTFSTNLKACGLLNALEKGLQ 499

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IHG+ ++ GF+    V ++L DMY KCG INEA ++F ++VDR ++SW AMI  +   G 
Sbjct: 500 IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGY 559

Query: 241 REEGFALFSELIKSGI--RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA- 297
             +    F  + ++ I  RP+ FT   +L AC+       GKQ+HG++ R G+   S A 
Sbjct: 560 GSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSAT 619

Query: 298 -ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
              +LV +Y KCG + +++K F+ +    ++SW+SLI GYAQ G   +A+  F+ L +  
Sbjct: 620 ITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELN 679

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQY-FHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           +Q D      ++       L+ +G Q    ++K   GL  +      +VD+  + G   E
Sbjct: 680 SQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV--LNSVVDMYLKCGLVDE 737

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE-----IEPE 461
           AE   ++M +K D   W  ++ G   HG   L K++    +E     IEP+
Sbjct: 738 AEKCFAEMQLK-DVISWTVVITGYGKHG---LGKKSVRIFYEMLRHNIEPD 784


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 231/380 (60%), Gaps = 1/380 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++++ + K G +  A ++F+   +R++ +W+AMI+GY +  +   A+ ++  M      
Sbjct: 259 NSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHA-AGF 317

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
              +FT   VL+A S +  L +GK+ HG +++ GF+    V SAL DMY KCG I +A++
Sbjct: 318 TPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKE 377

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            FD++ + D+V WTAM+  + Q G  EE   L++ + K GI P+  T A  L ACA  AA
Sbjct: 378 GFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAA 437

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            E GKQ+H  + + G    +   SAL  MYSKCGN+E+   VF  +P  D+++W S+I+G
Sbjct: 438 LEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISG 497

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           ++QNG  + AL+ FE +   GT PD+I F+ +L AC+H GLVD+G +YF  + + +GLT 
Sbjct: 498 FSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTP 557

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             DHYAC+VD+L+R+G   EA+D I  + +     LW  +LG CR   + D+   A E L
Sbjct: 558 RLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERL 617

Query: 456 FEIEPENPATYVTMANIYAS 475
            E+   + + Y+ ++NIYAS
Sbjct: 618 MELGTGDSSAYILLSNIYAS 637



 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 196/347 (56%), Gaps = 4/347 (1%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           VC+  ++++ + K G +  AR +FD MPQR++FSW+ M++GY       EA DL+R+M  
Sbjct: 155 VCT--SLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLE 212

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
              S  ++F  ++VLSAVS    L +G+++HG I++ G      V ++L  MY K G + 
Sbjct: 213 ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMG 272

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            A  +F+   +R+ ++W+AMI  Y Q G  +   ++FS++  +G  P  FTF GVLNA +
Sbjct: 273 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 332

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           D  A  +GKQ HG M ++G++   +  SALV MY+KCG + ++K+ F+ +   D+V WT+
Sbjct: 333 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 392

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +++G+ QNG  ++AL  +  + K G  P        L AC     ++ G Q  H+   K+
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ-LHTQIVKY 451

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           GL   A   + +  + ++ G   +   V  ++P + D   W S++ G
Sbjct: 452 GLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR-DVIAWNSIISG 497



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 33/276 (11%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  GK+ H  +   GF+  +++ + L+DMYAKCG I+DA+  FD++ E D+  +  M+S
Sbjct: 336 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS 395

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G  + G  E+A  L+  M +                                E  + +K 
Sbjct: 396 GHVQNGEHEEALTLYARMDK--------------------------------EGIIPSKS 423

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T++S L A + I  L  GK++H  I++ G      V SALS MY KCG++ +   +F ++
Sbjct: 424 TIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            DRDV++W ++I  + Q G       LF E+   G  P+  TF  +L AC+     + G 
Sbjct: 484 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 543

Query: 281 QVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSK 315
           +    MT+  G  P     + +V + S+ G ++ +K
Sbjct: 544 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAK 579



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 34/212 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS S  +S ++ C    ALE GK++H+ +   G   G  + + L  MY+KCGN+ D  ++
Sbjct: 420 PSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSV 479

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  + +RDV ++N++ISGF++ G    A +LF+EM                         
Sbjct: 480 FRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM------------------------- 514

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSD 202
                    E ++ +  T  ++L A S +  +  G E    + +  G       ++ + D
Sbjct: 515 -------KMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVD 567

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           +  + G + EA+   + + +D     W  ++G
Sbjct: 568 ILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 599



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 134/285 (47%), Gaps = 16/285 (5%)

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS--INEARQIFDKM--VDRDVVSWT 229
           C R G+ +H + +++G  S   V ++L + Y       +  A  +FD +    RDV SW 
Sbjct: 27  CPRHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWN 86

Query: 230 AMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           +++       R  +  + F  ++ S  + P+  +FA    A A  A+   G   H    +
Sbjct: 87  SLLNP-LSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACK 145

Query: 289 IGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           I     + +  ++L++MY K G V ++++VF+GMP+ +  SW++++AGYA     ++A +
Sbjct: 146 IPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFD 205

Query: 348 YFELLLKS-GTQPDHIVFVGVLTACTHAGLVDKGL---QYFHSIKEKHGLTYTADHYACI 403
            F L+L+   ++    V   VL+A +    V  GL   +  H +  K GL         +
Sbjct: 206 LFRLMLEECPSEKSEFVATAVLSAVS----VPLGLLMGEQMHGLIVKDGLLDFVSVENSL 261

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           V + A++G    A  V      + +   W++++ G   +G  D A
Sbjct: 262 VTMYAKAGCMGAAFHVFES-SRERNSITWSAMITGYAQNGEADSA 305


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 244/415 (58%), Gaps = 32/415 (7%)

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           +A+ LFD+M E +  S+N ++SG+ + G + +AR +FD+MP+R+  SWTAMI GYV+   
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGL 71

Query: 139 PIEA-LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD----SD 193
             EA L  +RM +   N VS    L  ++      +  +L            FD     D
Sbjct: 72  IEEAELLFWRMPER--NVVSWTVMLGGLIEDGRVDEARQL------------FDMMPVKD 117

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR-------------YFQEGR 240
            V  + + D     G + EAR+IFD+M  R+VV+WT+MI               Y ++G 
Sbjct: 118 VVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGF 177

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E  ALFS + + G+RP+  +   VL+ C   A+ + G+QVH  + R  +D   + +S 
Sbjct: 178 ELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSV 237

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY KCG++  +K+VF+     D+V W S+IAGYAQ+G  +KALE F  +  S   PD
Sbjct: 238 LITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPD 297

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I F+GVL+AC++ G V +GL+ F S+K K+ +    +HYAC+VDLL R+G+ +EA ++I
Sbjct: 298 EITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLI 357

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             MP++ D  +W +LLG CR H NLDLA+ AA+ L ++EP N   Y+ ++N+Y+S
Sbjct: 358 ENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSS 412



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 40/216 (18%)

Query: 23  HPS-PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
            PS PS+ S ++  C    +L+ G++VHS L  S F   +++S+ L+ MY KCG++  A+
Sbjct: 194 RPSFPSVIS-VLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAK 252

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +FD    +D+  +N++I+G+ + G  E+A  +F +M                       
Sbjct: 253 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDM----------------------- 289

Query: 142 ALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WS 198
                     F +S++ ++ T   VLSA S    ++ G EI    M++ +  D     ++
Sbjct: 290 ----------FSSSIAPDEITFIGVLSACSYTGKVKEGLEIFES-MKSKYQVDPKTEHYA 338

Query: 199 ALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            + D+ G+ G +NEA  + + M V+ D + W A++G
Sbjct: 339 CMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLG 374


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 257/453 (56%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++S +    ++ +L++ K++H ++   G    V++++ L+D+Y KC +   A  +
Sbjct: 210 PDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKM 269

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+   + D+  Y                               TAMISGYV      +AL
Sbjct: 270 FNLSTKFDIVIY-------------------------------TAMISGYVLNGMNKDAL 298

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +++R +   +  + N  T SS+L A + +  ++LG+E+HGYI++   +    V SA+ +M
Sbjct: 299 EIFRWLLQ-KKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNM 357

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG ++ A  IF ++  +D + W ++I  + Q+G+ EE   LF ++   G++ +  T 
Sbjct: 358 YAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTV 417

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +  L+ACA+  A   GK++HG+M +  ++   F  SAL++MY+KCG +  ++ VFN M  
Sbjct: 418 SAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQE 477

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + V+W S+IA Y  +G    +L  F  +L+ G QPDHI F+ +L++C HAG V+ G++Y
Sbjct: 478 KNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRY 537

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  + E++G+    +HYAC+ DL  R+G   EA +VI+ MP  P   +W +LLG CR+HG
Sbjct: 538 FRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHG 597

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++LA+ A+  L ++EP+N   Y+ + ++ A A
Sbjct: 598 NVELAEVASRYLLDLEPKNSGYYLLLTHVLADA 630



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 203/413 (49%), Gaps = 34/413 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +I+ C     +  GK +   +   GF   +F+++ L+ +YA  G I DA+  
Sbjct: 8   PDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRF 67

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+M ++D   +N MI+G+ + G  + A  LF +M   +                     
Sbjct: 68  FDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSE--------------------- 106

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                      +  +  T + VLS   +   +  G+++HG ++R+G D   +V + L  +
Sbjct: 107 -----------AKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTV 155

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K   + +AR++FD M   D+V W  MIG Y Q G  ++   LF+E+I +GI+P++ TF
Sbjct: 156 YSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITF 215

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L + A+ ++ +  K++HGY+ R G     +  SAL+ +Y KC +   + K+FN   +
Sbjct: 216 TSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTK 275

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V +T++I+GY  NGM   ALE F  LL+    P+ + F  +L AC     +  G + 
Sbjct: 276 FDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRE- 334

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            H    K+ L       + I+++ A+ GR   A  +  ++ +K D   W S++
Sbjct: 335 LHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIK-DAICWNSII 386



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 12/291 (4%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           +K+T   V+   + +  +RLGK I   I+  GFD D  V S+L  +Y   G I +AR+ F
Sbjct: 9   DKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFF 68

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           DKM+D+D V W  MI  Y Q G  +    LF +++ S  +P++ TFA VL+     A  E
Sbjct: 69  DKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVE 128

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+Q+HG + R G D      + LV +YSK   + +++K+F+ MP+ DLV W  +I GY 
Sbjct: 129 YGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYV 188

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           QNG  D A   F  ++ +G +PD I F   L +   +  + K ++  H    +HG+    
Sbjct: 189 QNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSL-KQIKEIHGYIVRHGVILDV 247

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPM-----KPDKFLWASLLGGCRIHG 443
              + ++DL      + +  D +    M     K D  ++ +++ G  ++G
Sbjct: 248 YLNSALIDL------YFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNG 292



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 100/196 (51%), Gaps = 2/196 (1%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           ++  G+ P+ +TF  V+  C       LGK +   +  +G+D   F AS+L+ +Y+  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +E++++ F+ M   D V W  +I GY Q G  D A++ F+ ++ S  +PD + F  VL+ 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
                +V+ G Q  H +  + GL +       +V + ++  +  +A  +   MP + D  
Sbjct: 121 SCSEAMVEYGRQ-LHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMP-QIDLV 178

Query: 431 LWASLLGGCRIHGNLD 446
           +W  ++GG   +G +D
Sbjct: 179 VWNRMIGGYVQNGFMD 194


>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
 gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
          Length = 673

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 243/451 (53%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS   Y   +  C   R LE+GK +H  + + GF   VF+ N L++MY+KC         
Sbjct: 112 PSDISYIHALCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRR------- 164

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   L+ AR  F+ +  +D  SW +MI+ + +     EAL
Sbjct: 165 ------------------------LDLAREAFERIDSKDVVSWNSMIAAHSQLGGSDEAL 200

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           + YR M   E     K TL   L A  +++     K +    +R G + D +V SAL   
Sbjct: 201 ETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQEDAIRLGLEGDLLVGSALVSA 260

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
            GKCG +++AR +FD+M  R+VVSW+ +I    + GR  +   LF  +   GI+PN  T 
Sbjct: 261 LGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDLDGIQPNEVTL 320

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL ACA   A   G++ H  ++  G++  +  A+ALV+MY KCG++ +++ VF+ M  
Sbjct: 321 LSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMTW 380

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++VSWT+++AGYA +G  ++A   F+ +   G QP+ I FV VL  C+HAG+V  GL+ 
Sbjct: 381 RNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNVITFVSVLFNCSHAGVVSDGLEQ 440

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           FH +    G+    +HY C++DLL R+G   EAE+++  MP++PDK  W SLLG C++H 
Sbjct: 441 FHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLRTMPVEPDKAAWNSLLGACKVHS 500

Query: 444 NLDLAKRAAEALFEIE-PENPATYVTMANIY 473
           + D AKR A+   ++  P   A YV ++N+Y
Sbjct: 501 HTDRAKRIAKLACDLALPFASAPYVLLSNMY 531



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 203/425 (47%), Gaps = 16/425 (3%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER--------DVCSYNTMISGFTKGGS 107
           G +P   I   LL+  A+    SD ++   E+Q R        DV     +IS   + G 
Sbjct: 5   GCRPNAVIFTRLLEACARSPEKSD-RSRLAEIQFRVVATGFDADVTVATALISALARCGD 63

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           LE AR  FD +P ++  SW +MI+    +     AL++YR M+  E    +  +    L 
Sbjct: 64  LEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEP-EGVKPSDISYIHALC 122

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           + S ++ L  GK IH  +   GFD+   V +AL +MY KC  ++ AR+ F+++  +DVVS
Sbjct: 123 SCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVS 182

Query: 228 WTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           W +MI  + Q G  +E    +  +I +  + P   T    L A     +    K +    
Sbjct: 183 WNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQEDA 242

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            R+G +      SALV    KCG ++ ++ VF+ M R ++VSW+ LIA  A++G    A+
Sbjct: 243 IRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRGRDAI 302

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           E F  +   G QP+ +  + VL AC   G + +G +  H+     G     +    +V++
Sbjct: 303 ELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEG-RRTHARVSGCGFEAETNVANALVNM 361

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA--AEALFEIEPENPA 464
             + G    A  V   M  + +   W ++L G   HG+ + A+R   A AL  I+P N  
Sbjct: 362 YGKCGHLGSARTVFDAMTWR-NVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQP-NVI 419

Query: 465 TYVTM 469
           T+V++
Sbjct: 420 TFVSV 424


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 249/446 (55%), Gaps = 53/446 (11%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C  +  L  GK VHS    S F+  +  SN LLDMY+KC                
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC---------------- 299

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A  +F++M +R+  SWT+MI+GY R  +   A+ L + M+
Sbjct: 300 ---------------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    +   ++S+L A +    L  GK++H YI     +S+  V +AL DMY KCGS+
Sbjct: 345 K-EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSM 403

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A  +F  MV +D++SW  MIG                      ++P++ T A VL AC
Sbjct: 404 EAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVLPAC 442

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  +A E GK++HGY+ R GY      A+ALV +Y KCG +  ++ +F+ +P  DLVSWT
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +IAGY  +G  ++A+  F  +  +G +PD + F+ +L AC+H+GL+++G ++F+ +K  
Sbjct: 503 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             +    +HYAC+VDLL+R+G   +A + +  +P+ PD  +W +LL GCR + +++LA++
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEK 622

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 623 VAERVFELEPENTGYYVLLANIYAEA 648



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 224/467 (47%), Gaps = 58/467 (12%)

Query: 5   LCNQRRLKEALQI--LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    L+ A+++  + Q S      Y S++Q C   ++  +GKKVHS +KS+       
Sbjct: 76  FCQLGDLENAMELICMCQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGA 135

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL-------------- 108
           +   L+  YA CG++ + + +FD M++++V  +N M+S + K G                
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 109 ------EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
                 E A  LFD++  RD  SW +MISGYV        L +Y+ M      V +  T+
Sbjct: 196 IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATI 254

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
            SVL   +    L LGK +H   +++ F+      + L DMY KCG ++ A ++F+KM +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R+VVSWT+MI  Y ++GR +    L  ++ K G++ +      +L+ACA   + + GK V
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H Y+     +   F  +AL+ MY+KCG++E +  VF+ M   D++SW ++I         
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG-------- 426

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTAD 398
                  EL      +PD      VL AC     +++G       KE HG      Y++D
Sbjct: 427 -------EL------KPDSRTMACVLPACASLSALERG-------KEIHGYILRNGYSSD 466

Query: 399 HYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +    +VDL  + G    A  +   +P K D   W  ++ G  +HG
Sbjct: 467 RHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHG 512


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 241/461 (52%), Gaps = 68/461 (14%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P       +++ C ++RA+ EG++VH      G    V++SN L+ MYA C 
Sbjct: 130 QMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVC- 188

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                          DV               +  AR +FD  PQRD  SWT MI GYV+
Sbjct: 189 ---------------DV---------------IRSARKVFDTSPQRDLVSWTTMIQGYVK 218

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                E + LY                                      I  +  + D  
Sbjct: 219 MGFAREGVGLY-------------------------------------IIRNSNVNLDVF 241

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +AL DMY KCG  N AR++F +M  ++VVSW +MI    Q+G+ +E   +F ++ + G
Sbjct: 242 VGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG 301

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           ++P+  T   VLN+CA+    ELGK VH Y+ R       F  +ALV MY+KCG+++ + 
Sbjct: 302 VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQAC 361

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            VF  M R D+ S+T++I G A +G   KAL+ F  + K G +PD + FVGVLTAC+H G
Sbjct: 362 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVG 421

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LV++G +YF  +   + L    +HY C+VDLL R+G  +EAE+ I  MP++PD F+  +L
Sbjct: 422 LVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGAL 481

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LG C+IHG ++L +   + + +IEP     YV M+NIY+SA
Sbjct: 482 LGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSA 522



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 168/347 (48%), Gaps = 47/347 (13%)

Query: 126 WTAMISGYVRYNQ-PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           + A+I G    N   IE L +Y+ M + +  V + +T+  VL A +  + +R G+E+HG 
Sbjct: 107 YNAIIRGLATSNNDSIEGLVVYKQMLS-KGIVPDNYTIPFVLKACAESRAVREGEEVHGQ 165

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++ G  SD  V + L  MY  C  I  AR++FD    RD+VSWT MI  Y + G   EG
Sbjct: 166 AIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREG 225

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             L+  +I++                                + +  D   F  +ALV M
Sbjct: 226 VGLY--IIRN--------------------------------SNVNLD--VFVGNALVDM 249

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCG+   ++KVF  MP  ++VSW S+I+G AQ G   ++L  F  + + G +PD +  
Sbjct: 250 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 309

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           V VL +C + G+++ G ++ H+  +++ +         +VD+ A+ G   +A  V   M 
Sbjct: 310 VAVLNSCANLGVLELG-KWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMN 368

Query: 425 MKPDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYV 467
            K D + + +++ G  +HG     LDL     +    IEP+   T+V
Sbjct: 369 RK-DVYSYTAMIVGLAMHGQGGKALDLFSEMPK--MGIEPDE-VTFV 411



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 146/296 (49%), Gaps = 18/296 (6%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRT--GFDSDEVVWSALSDMYGKCGSINE--ARQIFDK 219
           S LS +   + ++  K+IH  I++T    D+   + + LS +  +   I+   A  +  +
Sbjct: 39  SFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQ 98

Query: 220 MVDRDVVSWTAMI-GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           +   ++  + A+I G         EG  ++ +++  GI P+ +T   VL ACA+  A   
Sbjct: 99  LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE 158

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G++VHG   ++G     + ++ L+ MY+ C  + +++KVF+  P+ DLVSWT++I GY +
Sbjct: 159 GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVK 218

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVG--VLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
            G    A E   L +   +  +  VFVG  ++      G  +   + F  +  K+ +++ 
Sbjct: 219 MGF---AREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWN 275

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMP---MKPDKFLWASLLGGCRIHGNLDLAK 449
           +     ++  LA+ G+F E+  +  KM    +KPD     ++L  C   G L+L K
Sbjct: 276 S-----MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGK 326



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 128/332 (38%), Gaps = 82/332 (24%)

Query: 5   LCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L  + + KE+L +  ++      P      +++  C     LE GK VH++L  +  +  
Sbjct: 281 LAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRAD 340

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            FI N L+DMYAKCG+I  A  +F  M  +DV SY  MI G    G   +A +LF EMP+
Sbjct: 341 GFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPK 400

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                              IE                ++ T   VL+A S +  +  G++
Sbjct: 401 MG-----------------IEP---------------DEVTFVGVLTACSHVGLVEEGRK 428

Query: 181 IHG-----YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
                   Y +R   +     +  + D+ G+ G INEA +    M               
Sbjct: 429 YFEDMSTIYNLRPQLEH----YGCMVDLLGRAGLINEAEEFIRNM--------------- 469

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
                               I P+AF    +L AC  H   ELG+ V   + +I  +P  
Sbjct: 470 -------------------PIEPDAFVLGALLGACKIHGKVELGESVMKKIEKI--EPRK 508

Query: 296 FAASALV-HMYSKCGNVENSKKVFNGMPRPDL 326
             A  L+ ++YS      ++ K+   M   +L
Sbjct: 509 DGAYVLMSNIYSSANRWRDALKLRKTMKERNL 540


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 268/468 (57%), Gaps = 36/468 (7%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L ++ +I  Q+     HP+   Y  +++ C     +E G+++HS    +GF+  +++S  
Sbjct: 327 LAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMY+K                     Y            L++AR + + + +RD  SW
Sbjct: 387 LIDMYSK---------------------YRC----------LDKARKILEMLEKRDVVSW 415

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T+MI+GYV+++   EAL  ++ MQ+      +   L+S  SA + I+ +R G +IH  + 
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDC-GVWPDNIGLASAASACAGIKAMRQGLQIHARVY 474

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
            +G+ +D  +W+ L ++Y +CG   EA  +F ++  +D ++W  +I  + Q    E+   
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALM 534

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F ++ ++G + N FTF   ++A A+ A  + GKQVHG   + G+   +  A+AL+ +Y 
Sbjct: 535 VFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYG 594

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++E++K +F+ M   + VSW ++I   +Q+G   +AL+ F+ + + G +P+ + F+G
Sbjct: 595 KCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIG 654

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL AC+H GLV++GL YF S+   +GL    DHYAC+VD+L R+G+   A   + +MP+ 
Sbjct: 655 VLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPIT 714

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +  +W +LL  C++H N+++ + AA+ L E+EP + A+YV ++N YA
Sbjct: 715 ANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYA 762



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 216/436 (49%), Gaps = 39/436 (8%)

Query: 8   QRRL-KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           QR L KEA ++  Q+      P+P + SS++  C + +   +G+ +H+ +    F    F
Sbjct: 121 QRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + N L+ +Y   G+   A+ +F +M   D  ++NT+ISG  + G  E A  +FDEM    
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM---- 236

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                  +SG     +P                  +  T++S+L+A +++  L+ GK++H
Sbjct: 237 ------QLSGL----RP------------------DCVTVASLLAACASVGDLQKGKQLH 268

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
            Y+++ G   D +   +L D+Y KCG I  A  IF+     +VV W  M+  Y Q     
Sbjct: 269 SYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLA 328

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           + F +F ++  +GI PN FT+  +L  C      ELG+Q+H    + G++   + +  L+
Sbjct: 329 KSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLI 388

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MYSK   ++ ++K+   + + D+VSWTS+IAGY Q+   ++AL  F+ +   G  PD+I
Sbjct: 389 DMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNI 448

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
                 +AC     + +GLQ  H+     G       +  +V+L AR GR  EA  +  +
Sbjct: 449 GLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFRE 507

Query: 423 MPMKPDKFLWASLLGG 438
           +  K D+  W  L+ G
Sbjct: 508 IDHK-DEITWNGLISG 522



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 176/345 (51%), Gaps = 7/345 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I  + K G + QAR +F E+  RD+ SW AM+SGY +     EA  LY  M ++   
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQM-HWTAV 140

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           +   + LSSVLSA +  +    G+ IH  + +  F S+  V +AL  +Y   GS   A +
Sbjct: 141 IPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAER 200

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F  M+  D V++  +I  + Q G  E    +F E+  SG+RP+  T A +L ACA    
Sbjct: 201 VFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + GKQ+H Y+ + G         +L+ +Y KCG++E +  +FN   R ++V W  ++  
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q     K+ E F  +  +G  P+   +  +L  CT  G ++ G Q  HS+  K+G  +
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ-IHSLSIKNG--F 377

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +D Y    ++D+ ++     +A  ++ +M  K D   W S++ G
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKIL-EMLEKRDVVSWTSMIAG 421



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 11/287 (3%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           EIH   +  G  +D ++ + L D+Y K G + +ARQ+F ++  RD VSW AM+  Y Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
             +E F L+S++  + + P  +  + VL+AC        G+ +H  + +  +   +F  +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ +Y   G+ + +++VF  M   D V++ +LI+G+AQ G  + AL+ F+ +  SG +P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D +    +L AC   G + KG Q  HS   K G+++       ++DL  + G    A D+
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNL-DLAKRAAEALFEIEPENPAT 465
            + +  + +  LW  +L     +G + DLAK      FEI  +  AT
Sbjct: 303 FN-LGDRTNVVLWNLMLVA---YGQISDLAKS-----FEIFGQMQAT 340



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 69/260 (26%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALE-------------------------- 43
           R +EA  +  +I H     ++ LI    Q+R  E                          
Sbjct: 497 RSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAIS 556

Query: 44  ---------EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCS 94
                    +GK+VH     +G      ++N L+ +Y KCG+I DA+ +F EM  R+  S
Sbjct: 557 ALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS 616

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
           +NT+I+  ++ G   +A +LFD+M Q                                E 
Sbjct: 617 WNTIITSCSQHGRGLEALDLFDQMKQ--------------------------------EG 644

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEA 213
              N  T   VL+A S +  +  G      +    G +     ++ + D+ G+ G ++ A
Sbjct: 645 LKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRA 704

Query: 214 RQIFDKM-VDRDVVSWTAMI 232
           R+  D+M +  + + W  ++
Sbjct: 705 RRFVDEMPITANAMIWRTLL 724


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 168/449 (37%), Positives = 248/449 (55%), Gaps = 34/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L   C   R L  GK  H  +  +G     ++++ L+ MYA+CG +           
Sbjct: 131 YPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEM----------- 179

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                       GF        AR +FDEM  RD  SW +MISGY +     EA+ L+  
Sbjct: 180 ------------GF--------ARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFME 219

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+  E    ++ TL SVL A   +  L LG+ + G+++    + +  + SAL DMYGKCG
Sbjct: 220 MRE-EGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCG 278

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  AR++FD M ++DVV+W A+I  Y Q G   E   LF+ + ++G  P+  T   VL+
Sbjct: 279 DLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLS 338

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+   A +LGK V  + +  G     + ASAL+ MY+KCG+++++ +VF  MP  + VS
Sbjct: 339 ACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVS 398

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLK-SGT-QPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           W ++I+  A +G   +AL  F  + K +GT QP+ I F+GVL+AC HAGLVD+G Q F S
Sbjct: 399 WNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFES 458

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +    GL    +HY+C+VDL AR+G  +EA D+I KMP KPD+ +  SLLG C+   N D
Sbjct: 459 MNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNAD 518

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYAS 475
           + +R  +   E+E  N   YV  + IYA+
Sbjct: 519 VGERVIQLFLEMELSNSGNYVISSKIYAN 547



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 215/409 (52%), Gaps = 15/409 (3%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LL +  +C + +  + +  +M    +   N ++S       L  A  +F+++ + + +++
Sbjct: 36  LLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDLKDLAYASLVFNQLTKPNIYAF 95

Query: 127 TAMISG----YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             M+ G    + +Y+  +E   LY  +++     +N FT   +  A   ++ L  GK  H
Sbjct: 96  NVMLRGLATTWKKYDFCVE---LYYKLKSL-GLKANNFTYPFLFIACGNVRGLVHGKIGH 151

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
             + + G D DE V  +L  MY +CG +  AR++FD+M DRD+VSW +MI  Y + G  +
Sbjct: 152 CLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTK 211

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E   LF E+ + G  P+  T   VL AC D     LG+ V G++     +  S+  SAL+
Sbjct: 212 EAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALI 271

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY KCG++ ++++VF+ MP  D+V+W ++I GYAQNG  ++A+  F  + ++G  PD +
Sbjct: 272 DMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRV 331

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
             + VL+AC+  G +D G ++  +   + GL +     + ++D+ A+ G   +A  V   
Sbjct: 332 TMIEVLSACSTIGALDLG-KWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFES 390

Query: 423 MPMKPDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYV 467
           MP K ++  W +++     HG     L L +R ++    ++P N  T++
Sbjct: 391 MPHK-NEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQP-NDITFI 437



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 158/351 (45%), Gaps = 40/351 (11%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+ +  ++      P      S++  C     L  G+ V   +     +   ++ + L
Sbjct: 211 KEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSAL 270

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY KCG++  A+ +FD M  +DV ++N +I+G+ + G+  +A  LF+ M +       
Sbjct: 271 IDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMRE------- 323

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         ++ T+  VLSA S I  L LGK +  +   
Sbjct: 324 -------------------------AGPHPDRVTMIEVLSACSTIGALDLGKWVETHASE 358

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G   D  V SAL DMY KCGS+++A ++F+ M  ++ VSW AMI      G+ +E  +L
Sbjct: 359 KGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSL 418

Query: 248 FSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHM 304
           F  + K    ++PN  TF GVL+AC      + G+Q+   M    G  P     S +V +
Sbjct: 419 FRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDL 478

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            ++ G +  +  +   MP +PD +   SL+    +    D      +L L+
Sbjct: 479 CARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLE 529


>gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
 gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
          Length = 697

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 161/452 (35%), Positives = 257/452 (56%), Gaps = 8/452 (1%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+ +  Q+      PS   +S+ +  C +  AL EG ++H  +   G +    IS+ L
Sbjct: 243 KEAVSMFFQMFRESLMPSSFTFSNALIACSRMAALIEGGQIHGIVVKVGLEENEVISSSL 302

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY KCG +++A  +F +   R++ S+ +M+  +   G + +AR LF+EMP+R+  SW 
Sbjct: 303 IDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVISWN 362

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AM++GY+  +Q  EAL+   +M++    + ++ TL  +L+  +    +  GK++HG++ R
Sbjct: 363 AMLAGYIHSSQWEEALEFVHLMRSSIKDI-DRTTLCLILNVCTGSSDVERGKQVHGFVYR 421

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFA 246
           TGF ++  + +AL DMYGKCG++  A+  F +M   RD VSW A++  + + G  E+   
Sbjct: 422 TGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAMT 481

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +FSE+ +    PN FTFA +L ACA+  A E GKQ+HG+M R  Y        ALV MY 
Sbjct: 482 IFSEM-QLETDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNYAIDIVLTGALVDMYC 540

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL-LKSGTQPDHIVFV 365
           KC  ++ + KVF  +   D+V W S+I G   N     A++ F+L+ ++ G +PDH+ F 
Sbjct: 541 KCRELKYALKVFEHVASRDVVLWNSIILGCCHNRRDMLAIKLFQLMTMEEGIKPDHVTFQ 600

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G+L AC H  LV+ G +YF S+ EK  +    +HY C+V+L  + G   E E  I+ MP 
Sbjct: 601 GILLACLHENLVELGRKYFDSMSEKFCVIPRLEHYECMVELYGQHGNMDELEKFINNMPF 660

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            P   +   +   CR HG+  LA+  A  L E
Sbjct: 661 DPTVPMLERIFNACREHGHSRLAEWVAIRLNE 692



 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/508 (30%), Positives = 249/508 (49%), Gaps = 83/508 (16%)

Query: 10  RLKEALQILHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           RL +A+ IL     P P ++Y+ L Q C   RAL E +KV SHL +    P +F+ N  +
Sbjct: 42  RLGKAVLILFNSPFPFPHTLYTRLFQLCSSTRALVEARKVESHLATFCPTPPIFLLNRAI 101

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           + Y KCG + D                               AR LFDEMPQRD  SW A
Sbjct: 102 EAYGKCGCLKD-------------------------------ARELFDEMPQRDGGSWNA 130

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI+ Y +    +EAL+LY +  N     + + TL+S+L +  ++  L   ++IHG+I++ 
Sbjct: 131 MITAYTQNGYALEALNLY-LDLNKSGVYATEVTLASILRSCGSVLALHFSRQIHGHIVKC 189

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF  + ++ S+L D+YGKC  +N+AR +FD++ +R+ VSW  ++ RY + G  +E  ++F
Sbjct: 190 GFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVGNGKEAVSMF 249

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++ +  + P++FTF+  L AC+  AA   G Q+HG + ++G +     +S+L+ MY KC
Sbjct: 250 FQMFRESLMPSSFTFSNALIACSRMAALIEGGQIHGIVVKVGLEENEVISSSLIDMYVKC 309

Query: 309 GNVENSKKV-------------------------------FNGMPRPDLVSWTSLIAGYA 337
           G + N+ +V                               FN MP  +++SW +++AGY 
Sbjct: 310 GTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVISWNAMLAGYI 369

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +   ++ALE+  L+  S    D      +L  CT +  V++G       K+ HG  Y  
Sbjct: 370 HSSQWEEALEFVHLMRSSIKDIDRTTLCLILNVCTGSSDVERG-------KQVHGFVYRT 422

Query: 398 DHYA------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
             YA       ++D+  + G    A+    +M    DK  W +LL     HG  + A   
Sbjct: 423 GFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAMTI 482

Query: 452 -AEALFEIEPENPATYVTM----ANIYA 474
            +E   E +P N  T+ T+    AN++A
Sbjct: 483 FSEMQLETDPNN-FTFATLLGACANMFA 509


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 258/468 (55%), Gaps = 5/468 (1%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R   ALQ+ +++       ++S+I+ C     L   +K+   +     +  V     +++
Sbjct: 57  RFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMP----ERSVVSWTTMIN 112

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            + + G I  A+ LF +M  RD+ ++N+MI G+   G +E    LF EMP R+  SWT+M
Sbjct: 113 GFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSM 172

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           I G  ++ +  EAL L+R M      V     T   V++A +    L  G +IH ++ + 
Sbjct: 173 IGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKL 232

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G+  D  + +AL   Y  C  + ++ ++F   +  +VV WTA++  Y    + E+   +F
Sbjct: 233 GYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVF 292

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            E+++ G+ PN  +F   LN+C    A + G+++H    ++G +   F  ++L+ MY +C
Sbjct: 293 GEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRC 352

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GN+ +   +F  + + ++VSW S+I G AQ+G    AL +F  +++S  +PD I F G+L
Sbjct: 353 GNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLL 412

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+H+G+  KG   F    E        DHYAC+VD+L RSG+  EAE++I  MP+K +
Sbjct: 413 SACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKAN 472

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W  LL  C +H  L++A+RAA+ + ++EP   + YV ++N+YASA
Sbjct: 473 SMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASA 520



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 201/419 (47%), Gaps = 52/419 (12%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y S+I    +N+ ++E + V   +      P V++   ++  YA+      A  LF EM 
Sbjct: 14  YQSMITDHLRNQRIDEARTVFDKVSF----PDVYLYTMMITGYARNYRFDHALQLFYEMP 69

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            +DV S+N+MI G      L  AR LFDEMP+R   SWT MI+G++++ +   A  L+  
Sbjct: 70  VKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYK 129

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC- 207
           M                                           D   W+++  +YG C 
Sbjct: 130 MPF----------------------------------------RDIAAWNSM--IYGYCC 147

Query: 208 -GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNAFTFA 264
            G + +  ++F +M  R+V+SWT+MIG   Q GR EE   LF +++  G  ++P + T+ 
Sbjct: 148 NGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYC 207

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            V+ ACA+ +A   G Q+H ++ ++GY   ++ ++AL+  Y+ C  +E+S +VF+G    
Sbjct: 208 CVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHM 267

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           ++V WT+L+ GY  N   + AL+ F  +++ G  P+   F   L +C     +D G +  
Sbjct: 268 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-I 326

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           H+   K GL         ++ +  R G  ++   VI K   K +   W S++ GC  HG
Sbjct: 327 HTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGV-VIFKRISKKNIVSWNSVIVGCAQHG 384



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 87/177 (49%), Gaps = 17/177 (9%)

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE-YFELLL 353
           +F+  +++  + +   ++ ++ VF+ +  PD+  +T +I GYA+N   D AL+ ++E+ +
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 70

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           K     D + +  ++  C     +    + F  + E+  +++T      +++   + G+ 
Sbjct: 71  K-----DVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTT-----MINGFLQFGKI 120

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTM 469
             AE +  KMP + D   W S++ G   +G ++   R    LF+  P  N  ++ +M
Sbjct: 121 EVAEGLFYKMPFR-DIAAWNSMIYGYCCNGRVEDGLR----LFQEMPCRNVISWTSM 172


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 266/473 (56%), Gaps = 5/473 (1%)

Query: 5   LCNQRRLKEALQ-ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           LC+  RLK+AL      +     S++S + + CR   A+   +++H+   +SG     F 
Sbjct: 23  LCSSGRLKDALHHPFRGVLWSDASLFSHIFRACR---AIPLLRQLHAFAATSGAAADRFT 79

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +N LL  YA  G++  A+ LF+ + +R+V S+N +I G  K G L  AR LFD+MP R+ 
Sbjct: 80  TNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNV 139

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W AM++G        ++L  +  M+  E    ++F L SV    + +  +  G+++H 
Sbjct: 140 ATWNAMVAGLTNVGLDEDSLQFFLAMRR-EGMHPDEFGLGSVFRCCAGLLDVVSGRQVHA 198

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R+G DSD  V ++L+ MY +CG + E   +   +    +VS+   I    Q G  E 
Sbjct: 199 YVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEG 258

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
               FS +    + P+  TF   ++ C+D AA   G+QVH  + + G D      ++LVH
Sbjct: 259 ALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVH 318

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MYS+CG + +S++V++G    DL   +++I+    +G   KA+E F+ ++  G +P+ + 
Sbjct: 319 MYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVT 378

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ +L AC+H+GL D+GL++F  + + +G   +  HY CIVDLL RSG   EAE +I  M
Sbjct: 379 FLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSM 438

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P++ D  +W +LL  C+   N D+A+R AE + E +P + A YV ++NI A++
Sbjct: 439 PVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATS 491


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 149/455 (32%), Positives = 253/455 (55%), Gaps = 34/455 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +S+ ++ C     L+ G+++H     +GF     + N ++DMY+KCG I+     
Sbjct: 71  PNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRIN----- 125

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                     +A  +F+ MP R+  SW AMI+GY       +AL
Sbjct: 126 --------------------------EAACMFEVMPVRNLISWNAMIAGYTVAGFCEKAL 159

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF--DSDEVVWSALS 201
            L++ MQ       ++FT +S L A S +  ++ G +IH +++  GF    +  V  AL 
Sbjct: 160 VLFQKMQEV-GGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALI 218

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y KCG +  AR++F  + ++ V+SWTA+I  Y QEG   E   LF +L +S I+ + F
Sbjct: 219 DLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGF 278

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             + ++   AD A  + GKQ+H +  ++         ++++ MY KCG +  ++++F+ M
Sbjct: 279 ILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEM 338

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P  +++SWT +I GY ++G+  +A+  F+ +    T+PD + ++ VL  C+H+GLV+KG 
Sbjct: 339 PARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQ 398

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           +YF  +   HG+    +HYAC+VDLL R+GR  EA++++  MP++ +  +W +LL  CR+
Sbjct: 399 EYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRV 458

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HG+L+L K     L  ++ ENP  YV M+NIYA A
Sbjct: 459 HGDLELGKEVGGILLRLDSENPVNYVMMSNIYADA 493



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 207/387 (53%), Gaps = 16/387 (4%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+   N +I  + K G L  A ++FD M +R+  SWTA++ G+++   P+E+L L+  M 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKM- 64

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                  N FT S+ L A   +  L +G++IH   ++TGFD   VV +++ DMY KCG I
Sbjct: 65  GLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRI 124

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           NEA  +F+ M  R+++SW AMI  Y   G  E+   LF ++ + G   + FTF   L AC
Sbjct: 125 NEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKAC 184

Query: 271 ADHAAEELGKQVHGYMTRIG--YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +D  A + G Q+H ++   G  Y   +  A AL+ +Y KCG +  +++VF+ +    ++S
Sbjct: 185 SDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVIS 244

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSI 387
           WT+LI GYAQ G   +++E F  L +S  Q D  +   ++       LV +G Q +  +I
Sbjct: 245 WTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAI 304

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K   G+  +  +   I+D+  + G  +EAE + S+MP + +   W  ++ G   HG   L
Sbjct: 305 KVPSGVDISVCN--SILDMYLKCGMINEAERLFSEMPAR-NVISWTVMITGYGKHG---L 358

Query: 448 AKRAAEALFEI-----EPENPATYVTM 469
            K A     E+     EP++  TY+ +
Sbjct: 359 GKEAIRLFDEMQLDSTEPDD-VTYLAV 384



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 4/259 (1%)

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF  D ++ + L  MYGKCG +  A  +FD+M+ R+VVSWTA++  + Q G   E   LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           S++  SG++PN FTF+  L AC      ++G+Q+H    + G+D  +   ++++ MYSKC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G +  +  +F  MP  +L+SW ++IAGY   G  +KAL  F+ + + G   D   F   L
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADH--YACIVDLLARSGRFHEAEDVISKMPMK 426
            AC+  G + +G Q  H+     G  Y+ +      ++DL  + G+   A  V S +  K
Sbjct: 182 KACSDLGAIKEGNQ-IHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 427 PDKFLWASLLGGCRIHGNL 445
                W +L+ G    GNL
Sbjct: 241 -HVISWTALILGYAQEGNL 258


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 258/468 (55%), Gaps = 5/468 (1%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R   ALQ+ +++       ++S+I+ C     L   +K+   +     +  V     +++
Sbjct: 41  RFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMP----ERSVVSWTTMIN 96

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            + + G I  A+ LF +M  RD+ ++N+MI G+   G +E    LF EMP R+  SWT+M
Sbjct: 97  GFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSM 156

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           I G  ++ +  EAL L+R M      V     T   V++A +    L  G +IH ++ + 
Sbjct: 157 IGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKL 216

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G+  D  + +AL   Y  C  + ++ ++F   +  +VV WTA++  Y    + E+   +F
Sbjct: 217 GYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVF 276

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            E+++ G+ PN  +F   LN+C    A + G+++H    ++G +   F  ++L+ MY +C
Sbjct: 277 GEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRC 336

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GN+ +   +F  + + ++VSW S+I G AQ+G    AL +F  +++S  +PD I F G+L
Sbjct: 337 GNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLL 396

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+H+G+  KG   F    E        DHYAC+VD+L RSG+  EAE++I  MP+K +
Sbjct: 397 SACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKAN 456

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W  LL  C +H  L++A+RAA+ + ++EP   + YV ++N+YASA
Sbjct: 457 SMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASA 504



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 197/410 (48%), Gaps = 52/410 (12%)

Query: 38  QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNT 97
           +N+ ++E + V   +      P V++   ++  YA+      A  LF EM  +DV S+N+
Sbjct: 7   RNQRIDEARTVFDKVSF----PDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNS 62

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           MI G      L  AR LFDEMP+R   SWT MI+G++++ +   A  L+  M        
Sbjct: 63  MIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF------ 116

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--GSINEARQ 215
                                              D   W+++  +YG C  G + +  +
Sbjct: 117 ----------------------------------RDIAAWNSM--IYGYCCNGRVEDGLR 140

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADH 273
           +F +M  R+V+SWT+MIG   Q GR EE   LF +++  G  ++P + T+  V+ ACA+ 
Sbjct: 141 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 200

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           +A   G Q+H ++ ++GY   ++ ++AL+  Y+ C  +E+S +VF+G    ++V WT+L+
Sbjct: 201 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 260

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            GY  N   + AL+ F  +++ G  P+   F   L +C     +D G +  H+   K GL
Sbjct: 261 TGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-IHTAAVKLGL 319

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                    ++ +  R G  ++   VI K   K +   W S++ GC  HG
Sbjct: 320 ETDVFVGNSLIVMYYRCGNLNDGV-VIFKRISKKNIVSWNSVIVGCAQHG 368


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 254/461 (55%), Gaps = 26/461 (5%)

Query: 24  PSPSIYSSLIQFCRQNRAL---EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           P  S+ +SL    +   AL     G  +H+    SG     F +N LL++Y K       
Sbjct: 45  PRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVP----- 99

Query: 81  QTLFDEMQERDVCSY--NTMISGFTKGGS---LEQARNLFDEMPQRDNFSWTAMISGYVR 135
                       CSY  +T ++     GS    E  R +FDEM +RD  SW  ++ G   
Sbjct: 100 ------------CSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAE 147

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
             +  EAL   R M   E    + FTLS+VL   +    ++ G E+HG+  R GFDSD  
Sbjct: 148 EGRHHEALGFVRKMCR-EGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVF 206

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V S+L DMY  C   + + ++FD +  RD + W +++    Q G  EE   +F  ++++G
Sbjct: 207 VGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG 266

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           +RP   TF+ ++  C + A+   GKQ+H Y+   G++   F +S+L+ MY KCG +  + 
Sbjct: 267 VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAH 326

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            +F+ M  PD+VSWT++I GYA +G   +AL  FE +     +P+HI F+ VLTAC+HAG
Sbjct: 327 CIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAG 386

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LVDKG +YF S+   +G+  T +H+A + D L R+G   EA + ISKM +KP   +W++L
Sbjct: 387 LVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTL 446

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           L  CR+H N  LA+  A+ + E+EP +  ++V ++N+Y+++
Sbjct: 447 LRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSAS 487



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 150/330 (45%), Gaps = 38/330 (11%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EAL  + ++      P     S+++    +   ++ G +VH     +GF   VF+ +
Sbjct: 150 RHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGS 209

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMYA C     +  +FD +  RD   +N++++G  + GS+E+A  +F  M Q     
Sbjct: 210 SLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQ----- 264

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                +G     +P+                    T SS++     +  LR GK++H Y+
Sbjct: 265 -----AGV----RPVPV------------------TFSSLIPVCGNLASLRFGKQLHAYV 297

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +  GF+ +  + S+L DMY KCG I+ A  IFDKM   DVVSWTAMI  Y   G   E  
Sbjct: 298 ICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREAL 357

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHM 304
            LF  +     +PN  TF  VL AC+     + G +    M+   G  P     +AL   
Sbjct: 358 VLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADT 417

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLI 333
             + G ++ +    + M  +P    W++L+
Sbjct: 418 LGRAGELDEAYNFISKMQIKPTASVWSTLL 447



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 33/328 (10%)

Query: 11  LKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           ++EAL I  ++      P P  +SSLI  C    +L  GK++H+++   GF+  VFIS+ 
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSS 311

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRD 122
           L+DMY KCG IS A  +FD+M   DV S+  MI G+   G   +A  LF+ M     + +
Sbjct: 312 LIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPN 371

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--E 180
           + ++ A+++         +    ++ M N    V      +++   +      R G+  E
Sbjct: 372 HITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLG-----RAGELDE 426

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQ 237
            + +I +        VWS L        +   A ++  K+++   R + S   +   Y  
Sbjct: 427 AYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSA 486

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM----TRIGYDP 293
            GR  E   L   + K G++ +         AC   +  E+  ++H ++    +   YD 
Sbjct: 487 SGRWNEAAHLRESMRKKGMKKDP--------AC---SWIEVKSKLHVFVAHDRSHPWYDR 535

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGM 321
              A +A     ++ G+V N++ VF  +
Sbjct: 536 IIDALNAFSEQMAREGHVPNTEDVFQDI 563



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 23/242 (9%)

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF--TFAGVLNACADHAAEELGKQVHGY 285
           W   I     EG   +  +LF  +  S    ++   +    L +CA      LG  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 286 MTRIGYDPYSFAASALVHMYSK--CGNV-----------------ENSKKVFNGMPRPDL 326
             R G     F A+AL+++Y K  C  +                 E+ +KVF+ M   D+
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSW +L+ G A+ G   +AL +   + + G +PD      VL        V +GL+  H 
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLE-VHG 194

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              ++G        + ++D+ A   R   +  V   +P++ D  LW SLL GC  +G+++
Sbjct: 195 FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGSVE 253

Query: 447 LA 448
            A
Sbjct: 254 EA 255


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 149/452 (32%), Positives = 255/452 (56%), Gaps = 37/452 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    +  +I+ C   R  E G ++H  +   G++  VFISN L+ MY KC        
Sbjct: 7   QPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK------ 60

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                     E +R +FDEMP ++  SW+A+I   ++ ++  E 
Sbjct: 61  -------------------------YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEG 95

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             L+R M     S  ++ +  ++L+A++ ++      +++  ++  G D D+ V SA + 
Sbjct: 96  FSLFRQML----SEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAG 151

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           M+ +CG +  AR++FD ++ +D+V+W   I  Y +     E   L  +++  GI P+A T
Sbjct: 152 MFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAIT 211

Query: 263 FAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             GV+ AC+  A+ +L   VHG +T    Y+      +AL+ +Y KCG++  ++KVF+GM
Sbjct: 212 LLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGM 271

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              ++++W+++I+GY  +G   +AL  F+ + K+  +PDHI FV +L+AC+H+GLV +G 
Sbjct: 272 QERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGW 330

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + F+S+    G+T   +HYAC+VD+L R+G+  EA D I +MP++P+  +W +LLG CRI
Sbjct: 331 ECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRI 390

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           H N+DLA+  A ALF+++P N   YV + NIY
Sbjct: 391 HLNVDLAEMVARALFDLDPHNAGRYVILYNIY 422



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 164/338 (48%), Gaps = 16/338 (4%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C++  L    Q+  ++   +   +S++I  C Q+   +EG  +   + S G +P      
Sbjct: 58  CDKYELSR--QVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPS---RG 112

Query: 66  CLLDMYAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            +L+  A   +  +A  ++  + E     D    +     F + G +E AR LFD +  +
Sbjct: 113 AILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSK 172

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  +W   I  YV+ + P+EAL L + M   +    +  TL  V+ A S +   +L   +
Sbjct: 173 DLVTWATTIEAYVKADMPLEALGLLKQMM-LQGIFPDAITLLGVIRACSTLASFQLAHIV 231

Query: 182 HGYIMRTGFDSDEV--VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           HG I+ TGF  +++  V +AL D+Y KCGS+  AR++FD M +R++++W+AMI  Y   G
Sbjct: 232 HG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHG 290

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAA 298
              E   LF ++ K+ ++P+  TF  +L+AC+       G +    M R  G  P     
Sbjct: 291 WGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHY 349

Query: 299 SALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           + +V +  + G ++ +      MP RP+   W +L+  
Sbjct: 350 ACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGA 387



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 5/186 (2%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           +++ GI+P+ FTF  ++ AC+     E G ++H  + + GY    F +++L+ MY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
            E S++VF+ MP  + VSW+++I    Q+    +    F  +L  G++P     +  + A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-A 119

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C  +    +     + +  ++GL +     +    + AR GR   A  +   + M  D  
Sbjct: 120 CVRS---HEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGI-MSKDLV 175

Query: 431 LWASLL 436
            WA+ +
Sbjct: 176 TWATTI 181


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 251/452 (55%), Gaps = 33/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P +Y S+I  C Q++ L   + +HSHL  S      F+ N L+ MY KCG +SD    
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSD---- 115

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                      AR++FD +P RD  SWT +I+GY + + P EAL
Sbjct: 116 ---------------------------ARHVFDGIPTRDVVSWTYLITGYAQNDMPAEAL 148

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L   M       S  FT +S L A  A     +G+++H   ++   D D  V SAL DM
Sbjct: 149 GLLPDMLRARFRPSG-FTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDM 207

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +C  ++ A ++FD +  ++ VSW A+I  + ++G  E     F+E+ ++G     FT+
Sbjct: 208 YARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTY 267

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + V +A A   A E G+ VH +M + G    +F A+ ++ MY+K G++ +++KVF+ + +
Sbjct: 268 SSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQ 327

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLV+W +++  +AQ G+  +A+ +FE + K G Q + I F+ VLTAC+H GLV +G QY
Sbjct: 328 RDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQY 387

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +K+ + +    DHY   VDLL R+G   EA   + KMPM+P   +W +LLG CR+H 
Sbjct: 388 FDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHK 446

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N  + + AA+ +FE++PE+    V + NIYAS
Sbjct: 447 NAKIGQYAADHVFELDPEDTGPPVLLYNIYAS 478



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G RE    L  EL      P    +  ++ ACA        + +H +++R       F  
Sbjct: 46  GLRELDLLLTGELA-----PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLL 100

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++L+HMY KCG V +++ VF+G+P  D+VSWT LI GYAQN MP +AL     +L++  +
Sbjct: 101 NSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFR 160

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P    F   L A    G    G Q  H++  K+ L       + ++D+ AR  +   A  
Sbjct: 161 PSGFTFTSFLKAAGACGGRGIGEQ-MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIR 219

Query: 419 VISKMPMKPDKFLWASLLGG 438
           V   +  K ++  W +L+ G
Sbjct: 220 VFDWLDSK-NEVSWNALIAG 238


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 234/415 (56%), Gaps = 43/415 (10%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++    +CG I DAQ LFD+M++RDV S+ TM++G  K G +E AR LFD+MP R+  
Sbjct: 130 NTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVV 189

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW AMI+GY +  +  EAL L++ M                                   
Sbjct: 190 SWNAMITGYAQNRRLDEALQLFQRMP---------------------------------- 215

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
                 + D   W+ +   + + G +N A ++F +M +++V++WTAM+  Y Q G  EE 
Sbjct: 216 ------ERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEA 269

Query: 245 FALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             +F +++ +  ++PN  TF  VL AC+D A    G+Q+H  +++  +   +   SAL++
Sbjct: 270 LRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALIN 329

Query: 304 MYSKCGNVENSKKVFNG--MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           MYSKCG +  ++K+F+   + + DL+SW  +IA YA +G   +A+  F  + + G   + 
Sbjct: 330 MYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCAND 389

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           + FVG+LTAC+H GLV++G +YF  I +   +    DHYAC+VDL  R+GR  EA ++I 
Sbjct: 390 VTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIE 449

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +  +    +W +LL GC +HGN D+ K  AE + +IEP+N  TY  ++N+YAS 
Sbjct: 450 GLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSNMYASV 504



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 188/383 (49%), Gaps = 23/383 (6%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN- 123
           N  +    + G I  A+ +F+EM ERD+  + TMI+G+ K G + +AR LFD    + N 
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +WTAM++GY+++NQ  EA  L+  M    N VS    +          Q L L + +  
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMP-LRNVVSWNTMVDGYARNGLTQQALDLFRRMP- 122

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
                  + + V W+ +     +CG I +A+++FD+M DRDVVSWT M+    + GR E+
Sbjct: 123 -------ERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVED 175

Query: 244 GFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
             ALF ++ +++ +  NA       N   D A +   +     M          + + ++
Sbjct: 176 ARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMP---------SWNTMI 226

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDH 361
             + + G +  ++K+F  M   ++++WT+++ GY Q+G+ ++AL  F ++L  +  +P+ 
Sbjct: 227 TGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNT 286

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
             FV VL AC+    + +G Q  H +  K     +    + ++++ ++ G  H A  +  
Sbjct: 287 GTFVTVLGACSDLAGLTEG-QQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFD 345

Query: 422 K-MPMKPDKFLWASLLGGCRIHG 443
             +  + D   W  ++     HG
Sbjct: 346 DGLLSQRDLISWNGMIAAYAHHG 368


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 281/482 (58%), Gaps = 21/482 (4%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF-----ISN 65
           L  A  + +QI  PS  I++S+I+    + + +E   ++  ++  G+ P  F     +  
Sbjct: 55  LNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKA 114

Query: 66  C-LLDMY--AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           C L++ Y   +C +    +T F    E DV +   ++  +   G +E A  +FD++P+ +
Sbjct: 115 CSLVNGYNLGQCVHNCIVKTGF----EVDVYAATALLQMYAACGDMEAALKVFDDIPKWN 170

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             +WT++I+G +  + P EA+ +Y+ M+   +   N+ T+ +VL A +  + L  G+ +H
Sbjct: 171 VVAWTSLIAGCISNDCPSEAVRVYKDME-LWSVAPNEITMVNVLVACARSRDLNAGRWVH 229

Query: 183 GYIMRTGFDS-------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
               + G D        + ++ +A+ DMY KCGS+  AR +F+KM  R++V+W +MIG Y
Sbjct: 230 DRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAY 289

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G+  E   LFS++  +G  P+  TF  V+ ACA   A   G+ +H Y+++      +
Sbjct: 290 NQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDT 349

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK- 354
              +ALV MY+K G+ E +++VF+ + + D+ +WTSLI G A +G  ++AL +F+ + + 
Sbjct: 350 AIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQED 409

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           +   PD I ++GVL+AC+H G V+ G  +F S+K  HG+  T  HY C+VDLL+R+GR  
Sbjct: 410 TALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLG 469

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           EAE ++ KMP++P+  +W++LL GC+I+ N+D+A R    + E+E +    YV ++NIYA
Sbjct: 470 EAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYA 529

Query: 475 SA 476
            A
Sbjct: 530 GA 531



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 201/393 (51%), Gaps = 16/393 (4%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMIS--GFTKGGSLEQARNLFDEM 118
           N +L +  KC  +++ + L   M      +DV   + ++    ++  G+L  A+++F+++
Sbjct: 6   NSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQI 65

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
            +   + W +MI GY     P EAL +YR M+  +    + FT   VL A S +    LG
Sbjct: 66  DRPSLYIWNSMIKGYSISESPDEALTMYREMRQ-KGYAPDHFTFPFVLKACSLVNGYNLG 124

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           + +H  I++TGF+ D    +AL  MY  CG +  A ++FD +   +VV+WT++I      
Sbjct: 125 QCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISN 184

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS--- 295
               E   ++ ++    + PN  T   VL ACA       G+ VH    ++G DP+    
Sbjct: 185 DCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNS 244

Query: 296 ----FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                 A+A+V MY+KCG+++ ++ +FN MP  +LV+W S+I  Y Q G  ++AL+ F  
Sbjct: 245 NFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSD 304

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +  +G  PD   F+ V+ AC H G +  G Q  H+   K  LT        +VD+ A+SG
Sbjct: 305 MRIAGFDPDKATFLCVIGACAHLGALVSG-QALHAYVSKTNLTDDTAIGTALVDMYAKSG 363

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               A+ V S++  K D   W SL+ G  +HG+
Sbjct: 364 DAERAQQVFSEL-QKKDVTAWTSLIIGLAMHGH 395



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 152/295 (51%), Gaps = 11/295 (3%)

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM--YGKCGSINEARQIFDKM 220
           +S+LS +   + +   K +HG ++ T    D +  S L D   Y   G++N A+ +F+++
Sbjct: 6   NSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQI 65

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
               +  W +MI  Y      +E   ++ E+ + G  P+ FTF  VL AC+      LG+
Sbjct: 66  DRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQ 125

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
            VH  + + G++   +AA+AL+ MY+ CG++E + KVF+ +P+ ++V+WTSLIAG   N 
Sbjct: 126 CVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISND 185

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL------- 393
            P +A+  ++ +      P+ I  V VL AC  +  ++ G ++ H    + GL       
Sbjct: 186 CPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAG-RWVHDRTGQMGLDPFQSNS 244

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            +       IVD+ A+ G    A D+ +KMP + +   W S++G    +G  + A
Sbjct: 245 NFNVILATAIVDMYAKCGSLKTARDLFNKMPHR-NLVAWNSMIGAYNQYGQANEA 298



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 8/238 (3%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      LK A  + +++ H +   ++S+I    Q     E   + S ++ +GF P  
Sbjct: 255 VDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDK 314

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDE 117
               C++   A  G +   Q L   + +     D      ++  + K G  E+A+ +F E
Sbjct: 315 ATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSE 374

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           + ++D  +WT++I G   +    EAL  ++ MQ     + ++ T   VLSA S +  +  
Sbjct: 375 LQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVED 434

Query: 178 GKEIHGYIMRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMI 232
           GK  H   M+   G +     +  + D+  + G + EA ++ +KM V+ +   W+A++
Sbjct: 435 GKN-HFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALL 491


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/413 (36%), Positives = 239/413 (57%), Gaps = 41/413 (9%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL M  + G++  A+ LF  M ERDV ++ TM+ G  + G++++AR LFD MP+R+  
Sbjct: 169 NILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVV 228

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW AMISGY R ++  EALDL+  M + + +  N                          
Sbjct: 229 SWNAMISGYTRNHRLDEALDLFTKMPHRDIASCN-------------------------- 262

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           IM TGF  ++               +  AR++FD+M +R+VV+WT M+  Y +  + E  
Sbjct: 263 IMITGFIQNK--------------DLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELS 308

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF  ++ SGIRPN  TF G L+AC+D A    GKQVH  + +  +   +F  SAL+++
Sbjct: 309 LGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNV 368

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG V  ++K+F+     DL+SW  +IA YA +G+  +A+  +E +  +G +P+ + +
Sbjct: 369 YAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTY 428

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           V +L+AC+H+GLVD+GL+ F S+     +    +HY C++DL +R+GR  +A+ +I  + 
Sbjct: 429 VVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLK 488

Query: 425 MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +KP    +W++LLGGC  HGN  +   AA  L + EP+N  TY  ++NIYASA
Sbjct: 489 IKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASA 541



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 158/329 (48%), Gaps = 28/329 (8%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN- 123
           N L+   A  G + DA+ LFD   ERDV S+  ++S + + G L  AR+LFD    R N 
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +WTA++SGY R     EA  L++ M    N VS    L +   A  A     L      
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQ-RNVVSWNTMLEAYAVAGRAGDACAL------ 156

Query: 184 YIMRTGFD----SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
                 FD     D   W+ L  M  + GS+++AR++F +M +RDV++WT M+    + G
Sbjct: 157 ------FDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSG 210

Query: 240 RREEGFALFSELIKSGIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
             +E   LF  + +  +   NA       N   D A +   K  H  +          + 
Sbjct: 211 NVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIA---------SC 261

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + ++  + +  +++ ++K+F+ MP  ++V+WT+++ GY +    + +L  F  +L SG +
Sbjct: 262 NIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIR 321

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           P+ + F+G L AC+    + +G Q    I
Sbjct: 322 PNQVTFLGALDACSDLATLCEGKQVHQMI 350



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 149/338 (44%), Gaps = 78/338 (23%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           RL EAL +  ++ H   +  + +I    QN+ L+  +K                      
Sbjct: 242 RLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARK---------------------- 279

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
                        LFDEM ER+V ++ TM++G+ KG   E +  LF  M          +
Sbjct: 280 -------------LFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGM----------L 316

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           +SG +R NQ                      T    L A S +  L  GK++H  I +T 
Sbjct: 317 MSG-IRPNQ---------------------VTFLGALDACSDLATLCEGKQVHQMICKTA 354

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F  D  V SAL ++Y KCG +  AR++FD   ++D++SW  +I  Y   G   E   L+ 
Sbjct: 355 FQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYE 414

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA-----SALVHM 304
           ++  +G RPN  T+  +L+AC+     + G ++   M     +  S A      + L+ +
Sbjct: 415 KMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMV----NDRSIAVRDEHYTCLIDL 470

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVS-WTSLIAGYAQNG 340
            S+ G ++++K++ + +  +P   S W++L+ G   +G
Sbjct: 471 CSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG 508



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 127/302 (42%), Gaps = 53/302 (17%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I      G +  AR LFD  P+RD  SWTA++S Y R     +A  L+         
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFD-------- 95

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
                                          R+    + V W+AL   Y + G ++EA  
Sbjct: 96  -------------------------------RSDARRNVVTWTALLSGYARAGLVDEAEV 124

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHA 274
           +F +M  R+VVSW  M+  Y   GR  +  ALF  + ++     N      V +   D A
Sbjct: 125 LFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKA 184

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
            E  G+     +          A + +V   ++ GNV+ ++ +F+ MP  ++VSW ++I+
Sbjct: 185 RELFGRMPERDV---------MAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMIS 235

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GY +N   D+AL+ F  +        +I+  G +        + +  + F  + E++ +T
Sbjct: 236 GYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKD----LKRARKLFDEMPERNVVT 291

Query: 395 YT 396
           +T
Sbjct: 292 WT 293


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 277/511 (54%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  L    R++EAL ++  +      P  + Y+S +  C +  +LE GK++H  +  +  
Sbjct: 263 ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP 322

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               ++++ ++++YAKCG                                 ++A+ +F  
Sbjct: 323 HIDPYVASAMVELYAKCG-------------------------------CFKEAKRVFSS 351

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R++ SWT +I G+++Y    E+++L+  M+  E    ++F L++++S       + L
Sbjct: 352 LRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRA-ELMAVDQFALATLISGCCNTMDICL 410

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT-------- 229
           G ++H   +++G     VV ++L  MY KCG++  A  IF+ M +RD+VSWT        
Sbjct: 411 GSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQ 470

Query: 230 -----------------------AMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAG 265
                                  AM+G Y Q G  E+G  ++S+++ +  + P+  T+  
Sbjct: 471 VGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVT 530

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G+  ++G    +   +A++ MYSKCG +  ++K F+ + R D
Sbjct: 531 LFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKD 590

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           LVSW ++I GY+Q+GM  +A+E F+ +L  G +PD+I +V VL+ C+H+GLV++G  YF 
Sbjct: 591 LVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFD 650

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +K  H ++   +H++C+VDLL R+G   EA+++I +MPMKP   +W +LL  C+ HGN 
Sbjct: 651 MMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNN 710

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           DLA+ AA+ LF+++      Y+ +A +YA A
Sbjct: 711 DLAELAAKHLFDLDSPGSGGYMLLAKMYADA 741



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 225/475 (47%), Gaps = 41/475 (8%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF-DEMQERD 91
           ++ C    AL   + +HS L + G    VF+ N LL  Y  CG +SDA+ L  DE+ E +
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V ++N M++G+ K GSL  A  LF  MP RD  SW  ++SGY +  Q + ALD++  M+ 
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS-- 209
             +S+ N FT   V+ +  A+    +  ++ G + +     D  V +AL DM  +CG+  
Sbjct: 152 TGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMD 211

Query: 210 -----------------------------INEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                                        ++ A +IF  M +RDVVSW  +I    + GR
Sbjct: 212 FASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGR 271

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAA 298
             E   +  ++   G+RP++ T+   L ACA  ++ E GKQ+H  + R     DPY   A
Sbjct: 272 VREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY--VA 329

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           SA+V +Y+KCG  + +K+VF+ +   + VSWT LI G+ Q G   +++E F  +      
Sbjct: 330 SAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMA 389

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            D      +++ C +   +  G Q  HS+  K G T        ++ + A+ G    AE 
Sbjct: 390 VDQFALATLISGCCNTMDICLGSQ-LHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAEL 448

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           + + M  + D   W  ++      GN+    +A E   ++   N  T+  M   Y
Sbjct: 449 IFNFMAER-DIVSWTGMITAYSQVGNI---AKAREFFDDMSTRNVITWNAMLGAY 499



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 34/214 (15%)

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK------- 315
            A  L +C   +A    + +H  +  +G     F  + L+H Y  CG + +++       
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 316 -------------------------KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                                    ++F  MP  D+ SW ++++GY Q+G    AL+ F 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 351 LLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
            + ++G + P+   F  V+ +C   G  +  LQ    +  K       D    +VD+L R
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLL-GLLSKFDSQDDPDVQTALVDMLVR 206

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            G    A    S++         + L+G  + HG
Sbjct: 207 CGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHG 240


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 283/511 (55%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +  L    R++EAL ++  +         + Y+S +  C +  +L  GK++H+ +  +  
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               ++++ L+++YAKCG                                 ++A+ +F+ 
Sbjct: 302 CIDPYVASALVELYAKCG-------------------------------CFKEAKGVFNS 330

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R+N +WT +I+G++++    E+++L+  M+  E    ++F L++++S   +   L L
Sbjct: 331 LHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDLCL 389

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKC------------------------------ 207
           G+++H   +++G     VV ++L  MY KC                              
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQ 449

Query: 208 -GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAG 265
            G+I +AR+ FD M  ++V++W AM+G Y Q G  E+G  +++ ++ +  +RP+  T+  
Sbjct: 450 VGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVT 509

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G   ++G    +  A+A++ MYSKCG +  ++KVF+ +   D
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++I GY+Q+GM  +A+E F+ +LK G +PD+I +V VL+ C+H+GLV +G  YF 
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFD 629

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +K  H ++   +H++C+VDLL R+G   EA+D+I +MPMKP   +W +LL  C+IHGN 
Sbjct: 630 MMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNN 689

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ AA+ +FE++  +  +Y+ MA IYA A
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLMAKIYADA 720



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 218/479 (45%), Gaps = 41/479 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ-TLFDEM 87
           ++  ++ C    AL   + +H  L + G    VF+ N LL  Y  CG + DA+  L  ++
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDI 66

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
              +V ++N M++G+ K G L  A  LF  MP RD  SW  ++SGY +  Q + +L+ + 
Sbjct: 67  AHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFV 126

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M    +S  N FT +  + +  A+    L  ++ G + + G   D  V +AL DM+ +C
Sbjct: 127 SMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRC 186

Query: 208 GS-------------------------------INEARQIFDKMVDRDVVSWTAMIGRYF 236
           G+                               ++ A ++FD M +RDVVSW  M+    
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR--IGYDPY 294
           Q GR  E   +  ++   G+R ++ T+   L ACA  ++   GKQ+H  + R     DPY
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPY 306

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
              ASALV +Y+KCG  + +K VFN +   + V+WT LIAG+ Q+G   +++E F  +  
Sbjct: 307 --VASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRA 364

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
                D      +++ C     +  G Q  HS+  K G          ++ + A+     
Sbjct: 365 ELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQ 423

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            AE +   M  K D   W S++      GN+    +A E    +  +N  T+  M   Y
Sbjct: 424 SAESIFRFMNEK-DIVSWTSMITAHSQVGNI---AKAREFFDGMSTKNVITWNAMLGAY 478


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 253/454 (55%), Gaps = 36/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ + ++S+I+ C   + L   + +H     SG      +   L+    KC  I DA +L
Sbjct: 302 PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSL 361

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M                                 +   SWTAMISGY++     +A+
Sbjct: 362 FSLMH------------------------------GVQSVVSWTAMISGYLQNGDTDQAV 391

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+ +M+  E    N FT S++L+   A+       EIH  +++T ++    V +AL D 
Sbjct: 392 NLFSLMRR-EGVKPNHFTYSTILTVQHAV----FISEIHAEVIKTNYEKSSSVGTALLDA 446

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           + K G+I++A ++F+ +  +DV++W+AM+  Y Q G  EE   +F +L + GI+PN FTF
Sbjct: 447 FVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTF 506

Query: 264 AGVLNAC-ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             ++NAC A  A+ E GKQ H Y  ++  +     +S+LV +Y+K GN+E++ ++F    
Sbjct: 507 CSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK 566

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DLVSW S+I+GYAQ+G   KALE FE + K   + D I F+GV++AC HAGLV KG  
Sbjct: 567 ERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQN 626

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+ +   H +  T +HY+C++DL +R+G   +A D+I+ MP  P   +W  +L   R+H
Sbjct: 627 YFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVH 686

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++L K AAE +  +EP++ A YV ++NIYA+A
Sbjct: 687 RNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAA 720



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 232/473 (49%), Gaps = 48/473 (10%)

Query: 6   CNQRRLKEALQILHQI--SHPSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           C+Q   +EAL +   +  S  SP  Y  S ++  C  +     G++VH      G    +
Sbjct: 80  CDQT--QEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHL 137

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            + N L+DMY K GN+ D + +FDEM +RDV S+N++++G                    
Sbjct: 138 SVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTG-------------------- 177

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
             +SW        R+N  +   +L+ +MQ  E    + +T+S+V++A++    + +G +I
Sbjct: 178 --YSWN-------RFNDQV--WELFCLMQ-VEGYRPDYYTVSTVIAALANQGAVAIGMQI 225

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  +++ GF+++ +V ++L  M  K G + +AR +FD M ++D VSW +MI  +   G+ 
Sbjct: 226 HALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQD 285

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
            E F  F+ +  +G +P   TFA V+ +CA      L + +H    + G        +AL
Sbjct: 286 LEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTAL 345

Query: 302 VHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           +   +KC  ++++  +F+ M     +VSWT++I+GY QNG  D+A+  F L+ + G +P+
Sbjct: 346 MVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPN 405

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           H  +  +LT   HA  + +     H+   K     ++     ++D   + G   +A  V 
Sbjct: 406 HFTYSTILTV-QHAVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF 460

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMAN 471
             +  K D   W+++L G    G  + A +    L    I+P N  T+ ++ N
Sbjct: 461 ELIETK-DVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKP-NEFTFCSIIN 511



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 177/340 (52%), Gaps = 6/340 (1%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAV 169
           A+ LFD+ P RD      ++  Y R +Q  EAL L+  +  + + +S + +T+S VLS  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSL--YRSGLSPDSYTMSCVLSVC 112

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           +      +G+++H   ++ G      V ++L DMY K G++ + R++FD+M DRDVVSW 
Sbjct: 113 AGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWN 172

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           +++  Y      ++ + LF  +   G RP+ +T + V+ A A+  A  +G Q+H  + ++
Sbjct: 173 SLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKL 232

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G++      ++L+ M SK G + +++ VF+ M   D VSW S+IAG+  NG   +A E F
Sbjct: 233 GFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETF 292

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLA 408
             +  +G +P H  F  V+ +C  A L + GL +  H    K GL+   +    ++  L 
Sbjct: 293 NNMQLAGAKPTHATFASVIKSC--ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALT 350

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           +     +A  + S M        W +++ G   +G+ D A
Sbjct: 351 KCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA 390



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRA-LEEGKKVHSHLKSSGFKPGVFISNC 66
           +EA +I HQ++     P+   + S+I  C    A +E+GK+ H++         + +S+ 
Sbjct: 485 EEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSS 544

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           L+ +YAK GNI  A  +F   +ERD+ S+N+MISG+ + G  ++A  +F+EM +R+
Sbjct: 545 LVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRN 600



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 7/216 (3%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + +A+++   I       +S+++    Q    EE  K+   L   G KP  F    +++ 
Sbjct: 453 ISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINA 512

Query: 71  -YAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
             A   ++   +              +C  +++++ + K G++E A  +F    +RD  S
Sbjct: 513 CTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVS 572

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W +MISGY ++ Q  +AL+++  MQ   N   +  T   V+SA +    +  G+     +
Sbjct: 573 WNSMISGYAQHGQAKKALEVFEEMQK-RNLEVDAITFIGVISACAHAGLVGKGQNYFNIM 631

Query: 186 MRTGFDSDEVV-WSALSDMYGKCGSINEARQIFDKM 220
           +     +  +  +S + D+Y + G + +A  I + M
Sbjct: 632 INDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGM 667


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 274/467 (58%), Gaps = 6/467 (1%)

Query: 12  KEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           +EA ++  +I  P     S++I    ++    E   +   +   G KP  +I   +  + 
Sbjct: 304 EEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVA 363

Query: 72  AKCGNISDAQTLFDEMQERDVCSY----NTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           ++ G+ +  +++   + +          + +++ + K G+++ A   FD + + D FSW 
Sbjct: 364 SRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWN 423

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            ++S +   +   + L +++ M   E   +NK+T  SVL   +++  LR G ++H  I++
Sbjct: 424 TILSAFYSGSNCEQGLRIFKQMA-CEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILK 482

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +G  +D  V   L DMY + G    A  +F+++ +RD  SWT ++  Y +    E+    
Sbjct: 483 SGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEY 542

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F  +++  IRP+  T A  L+ C+D A+   G Q+H +  + G++  S  + ALV MY K
Sbjct: 543 FRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNS-SVVSGALVDMYVK 601

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CGN+ +++ +F+     D V+W ++I GY+Q+G   KAL+ F+ ++  G +PD I FVGV
Sbjct: 602 CGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGV 661

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC+HAGL+++G +YF S+   +G+T T +HYAC+VD+L+++GR  EAE +I++MP+ P
Sbjct: 662 LSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAP 721

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           D  +W ++LG CRIH N+++A+RAAE LFE+EP + ++ + ++NIYA
Sbjct: 722 DSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYA 768



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 199/421 (47%), Gaps = 37/421 (8%)

Query: 18  LHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           LH ++H     ++++ +Q C   R L  G+++H+ L  S   P  F+ + LL+MY KCG 
Sbjct: 41  LHTVAHAEELRLHAAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGR 100

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           + DA                               R +FD MP RD  +WTAMIS +   
Sbjct: 101 LVDA-------------------------------RRVFDGMPHRDIVAWTAMISAHTAA 129

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
               +ALD++  M N E    N FTL+SVL A S     +   ++HG +++     D  V
Sbjct: 130 GDSDQALDMFARM-NQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYV 188

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            S+L + Y  CG ++ A  +   + +R  VSW A++  Y + G       +  +L+ SG 
Sbjct: 189 GSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGD 248

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
             + +T   VL  C +    + G+ VH  + + G +  +   S LV MYS+C + E + +
Sbjct: 249 EISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYE 308

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF  +  PD+V  +++I+ + ++ M  +AL+ F  +   G +P+H +FVG+    +  G 
Sbjct: 309 VFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTG- 367

Query: 377 VDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            D  L +  H+   K G          I+++  + G   +A  V   +  +PD F W ++
Sbjct: 368 -DANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDAT-VTFDLIHEPDTFSWNTI 425

Query: 436 L 436
           L
Sbjct: 426 L 426



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 205/451 (45%), Gaps = 27/451 (5%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +++ C   RL +A ++   + H     ++++I         ++   + + +   G  P  
Sbjct: 92  LNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNG 151

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN---------TMISGFTKGGSLEQAR 112
           F    L  +   C   S ++  F       V   N         +++  +T  G L+ A 
Sbjct: 152 FT---LASVLKACSGGSHSK--FTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAE 206

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN-----KFTLSSVLS 167
            +   +P+R + SW A+++GY R+       D  R+M   E  V++     K+TL +VL 
Sbjct: 207 TVLLGLPERSDVSWNALLNGYARHG------DYRRVMIIIEKLVASGDEISKYTLPTVLK 260

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
               +   + G+ +H  +++ G ++D V+ S L +MY +C S  EA ++F ++ + DVV 
Sbjct: 261 CCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVH 320

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
            +AMI  + +     E   LF ++   G++PN + F G+    +      L + VH Y+ 
Sbjct: 321 CSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIV 380

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           + G+        A+++MY K G V+++   F+ +  PD  SW ++++ +      ++ L 
Sbjct: 381 KSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLR 440

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            F+ +   G   +   +V VL  CT    +  G Q  H+   K GL    D    +VD+ 
Sbjct: 441 IFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQ-VHACILKSGLQNDTDVSRMLVDMY 499

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           A+SG F  A  V  ++  + D F W  ++ G
Sbjct: 500 AQSGCFTSACLVFEQLKER-DAFSWTVIMSG 529


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 41/463 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHL----------KSSGFKPGVFISNCLLDMYAK 73
           P+ S   +L+    Q  AL +G  VH++             S    GV +   LLDMYAK
Sbjct: 226 PNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAK 285

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
           CG                               SL  AR +FD MP R+  +W+A+I G+
Sbjct: 286 CG-------------------------------SLLYARRVFDAMPARNEVTWSALIGGF 314

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           V  ++  +A  L++ M        +  +++S L A +++  LR+G+++H  + ++G  +D
Sbjct: 315 VLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHAD 374

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
               ++L  MY K G I++A  +FD+M  +D VS++A++  Y Q GR EE F +F ++  
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 434

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             + P+A T   ++ AC+  AA + G+  HG +   G    +   +AL+ MY+KCG ++ 
Sbjct: 435 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 494

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           S++VFN MP  D+VSW ++IAGY  +G+  +A   F  +   G  PD + F+ +L+AC+H
Sbjct: 495 SRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSH 554

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           +GLV +G  +FH ++  +GLT   +HY C+VDLL+R G   EA + I  MP++ D  +W 
Sbjct: 555 SGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 614

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LLG CR++ N+DL K+ +  + E+ PE    +V ++NIY++A
Sbjct: 615 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAA 657



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 201/442 (45%), Gaps = 54/442 (12%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+ +H H   +G +  +F+S  LLDMY KC  + DA  +F  M  RD+ ++N M++G+  
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G    A                                 L  M         N  TL +
Sbjct: 204 HGMYHHA------------------------------VAHLLSMQMQMHRLRPNASTLVA 233

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDE----------VVWSALSDMYGKCGSINEAR 214
           +L  ++    L  G  +H Y +R    S+           ++ +AL DMY KCGS+  AR
Sbjct: 234 LLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 293

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG---IRPNAFTFAGVLNACA 271
           ++FD M  R+ V+W+A+IG +    R  + F LF  ++  G   + P   + A  L ACA
Sbjct: 294 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACA 351

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                 +G+Q+H  + + G      A ++L+ MY+K G ++ +  +F+ M   D VS+++
Sbjct: 352 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 411

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           L++GY QNG  ++A   F+ +     +PD    V ++ AC+H   +  G     S+  + 
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR- 470

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           GL         ++D+ A+ GR   +  V + MP + D   W +++ G  IHG   L K A
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEA 526

Query: 452 AEALFEIE----PENPATYVTM 469
                E+     P +  T++ +
Sbjct: 527 TALFLEMNNLGFPPDGVTFICL 548



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 164/388 (42%), Gaps = 61/388 (15%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD---LYRMMQNFENSVSNKFTL 162
           G L +A +LFD++P  D  ++  +I  Y   + P  A D   LYR M        N +T 
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSS-SSPTAAADGLHLYRRMLR-HRVAPNNYTF 128

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
              L A SA+     G+ IH + +  G  +D  V +AL DMY KC  + +A  IF  M  
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 223 RDVVSWTAMIGRYFQEGRREEGFA--LFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
           RD+V+W AM+  Y   G      A  L  ++    +RPNA T   +L   A   A   G 
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 281 QVHGYMTRIGYDPYS----------FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
            VH Y  R                    +AL+ MY+KCG++  +++VF+ MP  + V+W+
Sbjct: 249 SVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 331 SLIAGYAQNGMPDKALEYFE------------------------------------LLLK 354
           +LI G+       +A   F+                                    LL K
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAK 368

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG   D      +L+    AGL+D+ +  F  +  K  ++Y+A     +V    ++GR  
Sbjct: 369 SGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA-----LVSGYVQNGRAE 423

Query: 415 EAEDVISKMP---MKPDKFLWASLLGGC 439
           EA  V  KM    ++PD     SL+  C
Sbjct: 424 EAFLVFKKMQACNVEPDAATMVSLIPAC 451


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 243/409 (59%), Gaps = 40/409 (9%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           ++  Y + G +++A+ LFDEM  R+V S+ TMISG+ + G ++ AR LF+ MP+++  SW
Sbjct: 177 MISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSW 236

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           TAM+ GY +  +  EA +L+  M                + AV A   + LG        
Sbjct: 237 TAMLMGYTQGGRIEEASELFDAMP---------------VKAVVACNAMILG-------- 273

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
                            +G+ G + +ARQ+FD++ ++D  +W+AMI  Y ++G   E   
Sbjct: 274 -----------------FGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALN 316

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF+ + + G++ N  +   VL+ CA  A+ + G+QVH  + +  +D   F AS L+ MY 
Sbjct: 317 LFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYV 376

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++  ++++F+     D+V W S+I GYAQ+G+ ++AL+ F  +  SG   D + FVG
Sbjct: 377 KCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVG 436

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC++ G V +GL+ F S+K K+ +    +HYAC+VDLL R+G  ++A D+I KMP++
Sbjct: 437 VLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVE 496

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            D  +W +LLG CR H N++LA+ AA+ L ++EP+N   Y+ ++NIYAS
Sbjct: 497 ADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYAS 545



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 190/412 (46%), Gaps = 34/412 (8%)

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
           G+   N ++  Y +     +A+ LFD+M ER+  S+N +ISG+ K   + +AR  FD MP
Sbjct: 46  GIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMP 105

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           +R+  SWTAM+ GYV+     EA  L+  M   +N VS    L  +      IQ  R+ +
Sbjct: 106 ERNVVSWTAMVRGYVQEGLVSEAETLFWQMPE-KNVVSWTVMLGGL------IQVRRIDE 158

Query: 180 EIHGYIMRTGFD----SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
                  R  FD     D V  + +   Y + G + EAR++FD+M  R+V+SWT MI  Y
Sbjct: 159 A------RGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGY 212

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G+ +    LF  + +     N  ++  +L         E   ++   M         
Sbjct: 213 VQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAMPVKAV---- 264

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
            A +A++  + + G V  +++VF+ +   D  +W+++I  Y + G   +AL  F L+ + 
Sbjct: 265 VACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQRE 324

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRF 413
           G Q +    + VL+ C     +D G Q    + +     + +D +  + ++ +  + G  
Sbjct: 325 GVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQ---FDSDVFVASVLITMYVKCGDL 381

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
            +A  +  +   K D  +W S++ G   HG   L + A +   E+     AT
Sbjct: 382 VKARQIFDRFSPK-DIVMWNSIITGYAQHG---LVEEALQVFHEMCSSGMAT 429



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 159/347 (45%), Gaps = 66/347 (19%)

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
           +YN+ I+ + + G +E AR +FDEMP +   SW +M++GY + N+P EA  L+  M    
Sbjct: 18  AYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPE-R 76

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           N+VS                                       W+ L   Y K   ++EA
Sbjct: 77  NTVS---------------------------------------WNGLISGYVKNRMVSEA 97

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           R+ FD M +R+VVSWTAM+  Y QEG   E   LF ++ +  +        G++      
Sbjct: 98  RKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRID 157

Query: 274 AAEELGKQVHGYMTRIGYD--PYS--FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
            A  L            +D  P     A + ++  Y + G +  ++++F+ MPR +++SW
Sbjct: 158 EARGL------------FDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISW 205

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T++I+GY QNG  D A + FE++     + + + +  +L   T  G +++  + F ++  
Sbjct: 206 TTMISGYVQNGQVDVARKLFEVM----PEKNEVSWTAMLMGYTQGGRIEEASELFDAMPV 261

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           K  +   A     ++    ++G   +A  V  ++  K D   W++++
Sbjct: 262 KAVVACNA-----MILGFGQNGEVAKARQVFDQIREKDDG-TWSAMI 302



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 37/211 (17%)

Query: 26  PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           PS+ S ++  C    +L+ G++VH+ L  S F   VF+++ L+ MY KCG++  A+ +FD
Sbjct: 331 PSLIS-VLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFD 389

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
               +D+  +N++I+G+ + G +E+A  +F EM            SG             
Sbjct: 390 RFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCS----------SGM------------ 427

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALSDM 203
                      ++  T   VLSA S    ++ G EI    M++ +  +     ++ + D+
Sbjct: 428 ----------ATDGVTFVGVLSACSYTGKVKEGLEIFES-MKSKYLVEPKTEHYACMVDL 476

Query: 204 YGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            G+ G +N+A  +  KM V+ D + W A++G
Sbjct: 477 LGRAGLVNDAMDLIQKMPVEADAIIWGALLG 507



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 14/166 (8%)

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           + A ++ +  Y++ G +E++++VF+ MP   +VSW S++AGY QN  P +A   F+ + +
Sbjct: 16  AIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPE 75

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
             T    + + G+++      +V +  + F ++ E++ +++TA     +V    + G   
Sbjct: 76  RNT----VSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTA-----MVRGYVQEGLVS 126

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           EAE +  +MP K +   W  +LGG      +D A+     LF+I P
Sbjct: 127 EAETLFWQMPEK-NVVSWTVMLGGLIQVRRIDEAR----GLFDIMP 167



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 23/245 (9%)

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           +++ + I RY + G+ E    +F E+   GI       AG         A  L  ++   
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP-- 74

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
                 +  + + + L+  Y K   V  ++K F+ MP  ++VSWT+++ GY Q G+  +A
Sbjct: 75  ------ERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEA 128

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
               E L     + + + +  +L        +D+    F  +  K  +  T      ++ 
Sbjct: 129 ----ETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTN-----MIS 179

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-NPA 464
              + GR  EA ++  +MP + +   W +++ G   +G +D+A++    LFE+ PE N  
Sbjct: 180 GYCQEGRLAEARELFDEMPRR-NVISWTTMISGYVQNGQVDVARK----LFEVMPEKNEV 234

Query: 465 TYVTM 469
           ++  M
Sbjct: 235 SWTAM 239


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 262/493 (53%), Gaps = 46/493 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   ++  +++ C Q    E G  +H  +   G +  + + N L+DMY KCGN   A+ +
Sbjct: 94  PDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLV 153

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNL----------------------------F 115
           F+EM+ERD+ S+N+MISG+   G  + A  L                            F
Sbjct: 154 FEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRF 213

Query: 116 DE-------MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
           DE       + Q +  SWT +IS Y +  +   +L +++ M   E    +   L SVL +
Sbjct: 214 DEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVS 273

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWS----ALSDMYGKCGSINEARQIFDKMVDRD 224
              I  LR GKEIHGY   T  +++ V +S    AL  MY KCG I +A  +F+ M   D
Sbjct: 274 CRHIGALRSGKEIHGY--GTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSD 331

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           +V+W AMI  + +    ++    F E+ +  I+ +  T + +L  C      + G  +H 
Sbjct: 332 IVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCD----LQYGNPIHA 387

Query: 285 YMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           Y+ + I         +A++HMY KCG V ++  +F  MP  D+VSW ++I G+  +G   
Sbjct: 388 YVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQ 447

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
            AL+  + ++ SG  P+   F  VL+AC+H+GLVD+G + F S+ E + +T   +HY+CI
Sbjct: 448 AALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCI 507

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VD+LAR+G+F +A   I KMP++PDK +W +LL  CR + NLD  + AAE L  +EP+  
Sbjct: 508 VDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQNLDFGRLAAEQLIRMEPKCA 567

Query: 464 ATYVTMANIYASA 476
             YVT++NIYA A
Sbjct: 568 GHYVTLSNIYARA 580



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 192/430 (44%), Gaps = 73/430 (16%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           ++Q C   ++L  GK++H  +  SG+    F+   L+ MYA C ++  AQ LFD      
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFD------ 54

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                                    +MPQ + ++WTA+   Y+R+    + +  Y  M+ 
Sbjct: 55  -------------------------KMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMK- 88

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
           + + + + +    VL A + +     G  IH  ++  G +S+  V ++L DMY KCG+  
Sbjct: 89  YSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNAR 148

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            AR +F++M +RD+ SW +MI  Y   G  +    L + +   G  P+  T+  +++A  
Sbjct: 149 SARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDA-- 206

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                                            Y + G  + + +V   + +P+++SWT+
Sbjct: 207 ---------------------------------YCQMGRFDEAWEVLKQIEQPNIISWTT 233

Query: 332 LIAGYAQNGMPDKALEYFE-LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKE 389
           LI+ Y++ G  D +L  F+ ++++    PD      VL +C H G +  G + + +  K 
Sbjct: 234 LISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKM 293

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +    + +   A ++ + A+ GR  +A +V   M  K D   W +++ G      LDL K
Sbjct: 294 ETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMD-KSDIVTWNAMILG---FVELDLGK 349

Query: 450 RAAEALFEIE 459
           +A E   E++
Sbjct: 350 QAIECFREMQ 359



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 150/325 (46%), Gaps = 43/325 (13%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN---CLLDMYAK 73
           I+ ++  P      S++  CR   AL  GK++H +  +      VF S+    LL MYAK
Sbjct: 255 IIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGY-GTKMETNTVFYSSAGAALLTMYAK 313

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
           CG I DA  +F+ M + D+ ++N MI GF +    +QA   F EM + D           
Sbjct: 314 CGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMD----------- 362

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDS 192
                          ++N      ++ T+S++L        L+ G  IH Y+ ++    S
Sbjct: 363 ---------------IKN------DQTTISTILPVCD----LQYGNPIHAYVRKSITLSS 397

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
              VW+A+  MY KCG +  A  IF  M ++DVVSW  MIG +   G  +    L  E+I
Sbjct: 398 VVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMI 457

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNV 311
            SGI PN+ TF  VL+AC+     + G ++   MT      P     S +V M ++ G  
Sbjct: 458 LSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQF 517

Query: 312 ENSKKVFNGMP-RPDLVSWTSLIAG 335
            ++    + MP  PD   W +L+A 
Sbjct: 518 ADAVTFIHKMPLEPDKSIWGALLAA 542


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 41/463 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP----------GVFISNCLLDMYAK 73
           P+ S   +L+    Q  AL +G  VH++   +   P          GV +   LLDMYAK
Sbjct: 226 PNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAK 285

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
           CG                               SL  AR +FD MP R+  +W+A+I G+
Sbjct: 286 CG-------------------------------SLLYARRVFDAMPARNEVTWSALIGGF 314

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           V  ++  +A  L++ M        +  +++S L A +++  LR+G+++H  + ++G  +D
Sbjct: 315 VLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHAD 374

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
               ++L  MY K G I++A  +FD+M  +D VS++A++  Y Q GR EE F +F ++  
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 434

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             + P+A T   ++ AC+  AA + G+  HG +   G    +   +AL+ MY+KCG ++ 
Sbjct: 435 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 494

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           S++VFN MP  D+VSW ++IAGY  +G+  +A   F  +   G  PD + F+ +L+AC+H
Sbjct: 495 SRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSH 554

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           +GLV +G  +FH +   +GLT   +HY C+VDLL+R G   EA + I  MP++ D  +W 
Sbjct: 555 SGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 614

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LLG CR++ N+DL K+ +  + E+ PE    +V ++NIY++A
Sbjct: 615 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAA 657



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 54/442 (12%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+ +H H   +G +  +F+S  LLDMY KC  + DA  +F  M  RD+ ++N M++G+  
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G    A                                 L  M         N  TL +
Sbjct: 204 HGMYHHA------------------------------VAHLLSMQMQMHRLRPNASTLVA 233

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDE----------VVWSALSDMYGKCGSINEAR 214
           +L  ++    L  G  +H Y +R     +           ++ +AL DMY KCGS+  AR
Sbjct: 234 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 293

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG---IRPNAFTFAGVLNACA 271
           ++FD M  R+ V+W+A+IG +    R  + F LF  ++  G   + P   + A  L ACA
Sbjct: 294 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACA 351

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                 +G+Q+H  + + G      A ++L+ MY+K G ++ +  +F+ M   D VS+++
Sbjct: 352 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 411

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           L++GY QNG  ++A   F+ +     +PD    V ++ AC+H   +  G     S+  + 
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR- 470

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           GL         ++D+ A+ GR   +  V + MP + D   W +++ G  IHG   L K A
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEA 526

Query: 452 AEALFEIE----PENPATYVTM 469
                E+     P +  T++ +
Sbjct: 527 TALFLEMNNLGFPPDGVTFICL 548



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 165/388 (42%), Gaps = 61/388 (15%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD---LYRMMQNFENSVSNKFTL 162
           G L +A +LFD++P  D  ++  +I  Y   + P  A D   LYR M        N +T 
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAY-SSSSPTAAADGLHLYRRMLR-HRVAPNNYTF 128

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
              L A SA+     G+ IH + +  G  +D  V +AL DMY KC  + +A  IF  M  
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 223 RDVVSWTAMIGRYFQEGRREEGFA--LFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
           RD+V+W AM+  Y   G      A  L  ++    +RPNA T   +L   A   A   G 
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 281 QVHGYMTRIGYDPYS----------FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
            VH Y  R    P               +AL+ MY+KCG++  +++VF+ MP  + V+W+
Sbjct: 249 SVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 331 SLIAGYAQNGMPDKALEYFE------------------------------------LLLK 354
           +LI G+       +A   F+                                    LL K
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAK 368

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG   D      +L+    AGL+D+ +  F  +  K  ++Y+A     +V    ++GR  
Sbjct: 369 SGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA-----LVSGYVQNGRAE 423

Query: 415 EAEDVISKMP---MKPDKFLWASLLGGC 439
           EA  V  KM    ++PD     SL+  C
Sbjct: 424 EAFLVFKKMQACNVEPDAATMVSLIPAC 451


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 258/470 (54%), Gaps = 42/470 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L E LQ+   ++H +   ++S +  C     L E K VH+ +  +GF   + + N L+ M
Sbjct: 487 LAELLQMGKVMNHVT---FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 543

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y K G                                + +A+ +   MPQ D  +W A+I
Sbjct: 544 YGKLG-------------------------------MMMEAKKVLQTMPQPDRVTWNALI 572

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ-CLRLGKEIHGYIMRTG 189
            G+    +P EA+  Y++++  +   +N  T+ SVL A SA    L+ G  IH +I+ TG
Sbjct: 573 GGHAENEEPNEAVKAYKLIRE-KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTG 631

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F+SD+ V ++L  MY KCG +N +  IFD + ++  ++W AM+      G  EE   +F 
Sbjct: 632 FESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFG 691

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           E+   G+  + F+F+G L A A+ A  E G+Q+HG + ++G++      +A + MY KCG
Sbjct: 692 EMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 751

Query: 310 NVENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
            + +  K+   +P+P     +SW  LI+ +A++G   KA E F  +LK G +PDH+ FV 
Sbjct: 752 EMHDVLKM---LPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVS 808

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L+AC H GLVD+GL Y+ S+  + G+    +H  CI+DLL RSGR   AE  I +MP+ 
Sbjct: 809 LLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVP 868

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P+   W SLL  CRIHGNL+LA++ AE L E++P + + YV  +N+ A++
Sbjct: 869 PNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATS 918



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 203/389 (52%), Gaps = 15/389 (3%)

Query: 65  NCLLDMYAKCGNISDA----QTLFDEMQ---ERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           N    + + CG + D     Q L   +Q   E  V   N++IS F+   S+E+A  +FD 
Sbjct: 298 NTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDH 357

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M + D  SW AMIS Y  +    E+L  +  M++  N  +N  TLSS+LS  S++  L+ 
Sbjct: 358 MNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE-TNSTTLSSLLSVCSSVDNLKW 416

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+ IHG +++ G DS+  + + L  +Y + G   +A  +F  M +RD++SW +M+  Y Q
Sbjct: 417 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 476

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
           +G+  +G  + +EL++ G   N  TFA  L AC++       K VH  +   G+  +   
Sbjct: 477 DGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIV 536

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV MY K G +  +KKV   MP+PD V+W +LI G+A+N  P++A++ ++L+ + G 
Sbjct: 537 GNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGI 596

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT-YTADHYA--CIVDLLARSGRFH 414
             ++I  V VL AC+     D  L++   I     LT + +D Y    ++ + A+ G  +
Sbjct: 597 PANYITMVSVLGACSAP---DDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLN 653

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +  +   +  K     W +++     HG
Sbjct: 654 SSNYIFDGLGNK-SPITWNAMVAANAHHG 681



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 212/460 (46%), Gaps = 51/460 (11%)

Query: 24  PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+  + +SLI  C R     +EG +VH  +  +G    V++   L+  Y   G + +AQ 
Sbjct: 193 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQ- 251

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                          LF+EMP  +  SWT+++ GY     P E 
Sbjct: 252 ------------------------------KLFEEMPDHNVVSWTSLMVGYSDSGNPGEV 281

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L++Y+ M+  E    N+ T ++V S+   ++   LG ++ G+I++ GF+    V ++L  
Sbjct: 282 LNVYQRMRQ-EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLIS 340

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           M+    S+ EA  +FD M + D++SW AMI  Y   G   E    F  +       N+ T
Sbjct: 341 MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 400

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            + +L+ C+     + G+ +HG + ++G D      + L+ +YS+ G  E+++ VF  M 
Sbjct: 401 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 460

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL+SW S++A Y Q+G     L+    LL+ G   +H+ F   L AC++   + +   
Sbjct: 461 ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES-- 518

Query: 383 YFHSIKEKHGLTYTADHY------ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                K  H L   A  +        +V +  + G   EA+ V+  MP +PD+  W +L+
Sbjct: 519 -----KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALI 572

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
           GG   H   +    A +A   I  +  PA Y+TM ++  +
Sbjct: 573 GG---HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGA 609



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 198/380 (52%), Gaps = 15/380 (3%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           NT+I+ ++K G++E AR +FDEM  R+  SW+ M+SGYVR     EA+ L+  M      
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGL-GV 191

Query: 156 VSNKFTLSSVLSAVSAIQCLR-LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
             N F ++S+++A S    +   G ++HG++++TG   D  V +AL   YG  G +  A+
Sbjct: 192 EPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQ 251

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++F++M D +VVSWT+++  Y   G   E   ++  + + G+  N  TFA V ++C    
Sbjct: 252 KLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLE 311

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
            + LG QV G++ + G++     A++L+ M+S   +VE +  VF+ M   D++SW ++I+
Sbjct: 312 DQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMIS 371

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            YA +G+  ++L  F  +     + +      +L+ C+    +  G +  H +  K GL 
Sbjct: 372 AYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWG-RGIHGLVVKLGL- 429

Query: 395 YTADHYACIVDLL----ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN--LDLA 448
              D   CI + L    + +GR  +AE V   M  + D   W S++  C +     LD  
Sbjct: 430 ---DSNVCICNTLLTLYSEAGRSEDAELVFQAMTER-DLISWNSMM-ACYVQDGKCLDGL 484

Query: 449 KRAAEALFEIEPENPATYVT 468
           K  AE L   +  N  T+ +
Sbjct: 485 KILAELLQMGKVMNHVTFAS 504



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 3/208 (1%)

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L   S I     GK +H + +    +      + L +MY K G+I  AR +FD+M  R+ 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC--ADHAAEELGKQVH 283
            SW+ M+  Y + G  EE   LF ++   G+ PN F  A ++ AC  + + A+E G QVH
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE-GFQVH 219

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G++ + G     +  +ALVH Y   G V N++K+F  MP  ++VSWTSL+ GY+ +G P 
Sbjct: 220 GFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPG 279

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTAC 371
           + L  ++ + + G   +   F  V ++C
Sbjct: 280 EVLNVYQRMRQEGVSGNQNTFATVTSSC 307



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 255 GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           GIR  NA  F   L   ++  ++  GK +H +      +   F  + L++MYSK GN+E+
Sbjct: 90  GIRCLNAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEH 147

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ VF+ M   +  SW+++++GY + G+ ++A+  F  +   G +P+  +   ++TAC+ 
Sbjct: 148 ARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSR 207

Query: 374 AG-LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           +G + D+G Q  H    K G+         +V      G  + A+ +  +MP   +   W
Sbjct: 208 SGYMADEGFQ-VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP-DHNVVSW 265

Query: 433 ASLLGGCRIHGN 444
            SL+ G    GN
Sbjct: 266 TSLMVGYSDSGN 277


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 256/453 (56%), Gaps = 34/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +SS++    + +  + GK++H      G +  +F++N L+DMYA           
Sbjct: 208 PNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYA----------- 256

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                               K G   QA N+F+++ +++  SW AM++ + +    + A+
Sbjct: 257 --------------------KSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAV 296

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL R MQ  +  + N  T ++VL A + I  LR GKEIH   +RTG   D  V +AL+DM
Sbjct: 297 DLVRQMQA-DGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDM 355

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +N AR++F K+  RD VS+  +I  Y Q     E   LF E+   G++ +  ++
Sbjct: 356 YAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSY 414

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            GV++ACA+ AA + GK+VHG   R     + F A+AL+  Y KCG ++ + KVF  +P 
Sbjct: 415 MGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPS 474

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D  SW S+I GY   G    A+  FE + + G + D + ++ VL+AC+H GLV++G +Y
Sbjct: 475 RDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKY 534

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  ++ ++ +  T  HYAC+VDLL R+G   EA  +I  +P++PD  +W +LLG CRIHG
Sbjct: 535 FEHMQVQN-IKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHG 593

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            ++LA  AAE LF+++P++   Y  ++N+YA A
Sbjct: 594 YIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEA 626



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 193/388 (49%), Gaps = 32/388 (8%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +++ C  + ++++G+++H  +   GF   VF+ N LL  Y  CG + D            
Sbjct: 13  VLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV----------- 61

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                               + +FDEM +RD  SW ++I  +  +    EA+ L+  M  
Sbjct: 62  --------------------KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNL 101

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                 N  ++ SVL   + ++    G++IH Y+++TG DS   V +AL D+YGKCG + 
Sbjct: 102 RSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVK 161

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           ++R++FD++ +R+ VSW A+I       R ++   +F  +I  G++PN+ TF+ +L    
Sbjct: 162 DSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLV 221

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           +    + GK++HG+  R G +   F A+AL+ MY+K G    +  VFN +   ++VSW +
Sbjct: 222 ELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNA 281

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           ++A +AQN +   A++    +   G  P+ + F  VL AC   G +  G +  H+   + 
Sbjct: 282 MVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPG-KEIHARAIRT 340

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDV 419
           G +        + D+ A+ G  + A  V
Sbjct: 341 GSSVDLFVSNALTDMYAKCGCLNLARRV 368



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/437 (29%), Positives = 212/437 (48%), Gaps = 57/437 (13%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G+++H ++  +G    V + N L+D+Y KCG + D+                        
Sbjct: 128 GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDS------------------------ 163

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMIS--GYVRYNQPIEALDLYRMMQNFENSVS-NKFT 161
                  R +FDE+ +R+  SW A+I+   Y+  NQ  +AL+++R+M   +  V  N  T
Sbjct: 164 -------RRVFDEISERNGVSWNAIITSLAYLERNQ--DALEMFRLM--IDGGVKPNSVT 212

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
            SS+L  +  ++    GKEIHG+ +R G +SD  V +AL DMY K G   +A  +F+++ 
Sbjct: 213 FSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIG 272

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
           ++++VSW AM+  + Q         L  ++   G  PN+ TF  VL ACA       GK+
Sbjct: 273 EKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKE 332

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    R G     F ++AL  MY+KCG +  +++VF    R D VS+  LI GY+Q   
Sbjct: 333 IHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLR-DEVSYNILIIGYSQTTN 391

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             ++L  F  +   G + D + ++GV++AC +   + +G       KE HGL      + 
Sbjct: 392 CSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQG-------KEVHGLAVRKHLHT 444

Query: 402 ------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
                  ++D   + GR   A  V  ++P + D   W S++ G  + G L +A      L
Sbjct: 445 HLFIANALLDFYIKCGRIDLAGKVFRQIPSR-DTASWNSMILGYGMLGELTIAIN----L 499

Query: 456 FEIEPENPATYVTMANI 472
           FE   E+   Y +++ I
Sbjct: 500 FEAMKEDGVEYDSVSYI 516



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 2/267 (0%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T   VL A +    ++ G+EIHG + + GFDSD  V + L   YG CG + + +++FD+M
Sbjct: 9   TFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEM 68

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELG 279
           ++RDVVSW ++IG +   G   E   LF E+ ++SG RPN  +   VL  CA       G
Sbjct: 69  LERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTG 128

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +Q+H Y+ + G D      +ALV +Y KCG V++S++VF+ +   + VSW ++I   A  
Sbjct: 129 RQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYL 188

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
                ALE F L++  G +P+ + F  +L       L D G +  H    + GL      
Sbjct: 189 ERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFG-KEIHGFSLRFGLESDIFV 247

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMK 426
              ++D+ A+SGR  +A +V +++  K
Sbjct: 248 ANALIDMYAKSGRSLQASNVFNQIGEK 274



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 6/172 (3%)

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G+R +  TF  VL ACAD  + + G+++HG + ++G+D   F  + L+  Y  CG +++ 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTH 373
           K+VF+ M   D+VSW S+I  ++ +G   +A+  F E+ L+SG +P+ +  V VL  C  
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVC-- 119

Query: 374 AGLVD--KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           AGL D   G Q  H    K GL         +VD+  + G   ++  V  ++
Sbjct: 120 AGLEDGVTGRQ-IHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEI 170



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 34/229 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  +I  C    AL++GK+VH           +FI+N LLD Y KCG I  A  +F ++ 
Sbjct: 414 YMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIP 473

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMIS-----GYV----R 135
            RD  S+N+MI G+   G L  A NLF+ M +     D+ S+ A++S     G V    +
Sbjct: 474 SRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKK 533

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE------------IHG 183
           Y + ++  ++     ++   V        +  AV  I+ L +  +            IHG
Sbjct: 534 YFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHG 593

Query: 184 YIMRTGFDSDEVV---------WSALSDMYGKCGSINEARQIFDKMVDR 223
           YI    + ++ +          +S LS+MY + G  +EA Q+   M  R
Sbjct: 594 YIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSR 642


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 248/446 (55%), Gaps = 53/446 (11%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C ++  L  GK VHS    S F+  +  SN LLDMY+KC                
Sbjct: 118 SVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC---------------- 161

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A  +F++M +R+  SWT+MI+GY R      A+ L + M+
Sbjct: 162 ---------------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME 206

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    +   ++S+L A +    L  GK++H YI      S+  V +AL DMY KCGS+
Sbjct: 207 K-EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSM 265

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A  +F  MV +D++SW  M+G                      ++P++ T A +L AC
Sbjct: 266 EGANSVFSTMVVKDIISWNTMVGE---------------------LKPDSRTMACILPAC 304

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  +A E GK++HGY+ R GY      A+ALV +Y KCG +  ++ +F+ +P  DLVSWT
Sbjct: 305 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 364

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +IAGY  +G  ++A+  F  +  +G +PD + F+ +L AC+H+GL+++G ++F+ +K  
Sbjct: 365 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 424

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             +    +HYAC+VDLL+R+G   +A   I  +P+ PD  +W +LL GCRI+ +++LA++
Sbjct: 425 FNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEK 484

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 485 VAERVFELEPENTGYYVLLANIYAEA 510



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 192/403 (47%), Gaps = 56/403 (13%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL------------------ 108
           L+  YA CG++ + + +FD M++++V  +N M+S + K G                    
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 109 --EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
             E A  LFD++  RD  SW +MISGYV        L +Y+ M      V +  T+ SVL
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVL 120

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
              +    L LGK +H   +++ F+      + L DMY KCG ++ A ++F+KM +R+VV
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SWT+MI  Y ++G  +    L  ++ K G++ +      +L+ACA   + + GK VH Y+
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 240

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
                    F  +AL+ MY+KCG++E +  VF+ M   D++SW +++             
Sbjct: 241 KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------ 288

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTADHYA- 401
              EL      +PD      +L AC     +++G       KE HG      Y++D +  
Sbjct: 289 ---EL------KPDSRTMACILPACASLSALERG-------KEIHGYILRNGYSSDRHVA 332

Query: 402 -CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +VDL  + G    A  +   +P K D   W  ++ G  +HG
Sbjct: 333 NALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHG 374


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 258/470 (54%), Gaps = 42/470 (8%)

Query: 11   LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
            L E LQ+   ++H +   ++S +  C     L E K VH+ +  +GF   + + N L+ M
Sbjct: 1137 LAELLQMGKVMNHVT---FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 1193

Query: 71   YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
            Y K G                                + +A+ +   MPQ D  +W A+I
Sbjct: 1194 YGKLG-------------------------------MMMEAKKVLQTMPQPDRVTWNALI 1222

Query: 131  SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ-CLRLGKEIHGYIMRTG 189
             G+    +P EA+  Y++++  +   +N  T+ SVL A SA    L+ G  IH +I+ TG
Sbjct: 1223 GGHAENEEPNEAVKAYKLIRE-KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTG 1281

Query: 190  FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
            F+SD+ V ++L  MY KCG +N +  IFD + ++  ++W AM+      G  EE   +F 
Sbjct: 1282 FESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFG 1341

Query: 250  ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            E+   G+  + F+F+G L A A+ A  E G+Q+HG + ++G++      +A + MY KCG
Sbjct: 1342 EMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 1401

Query: 310  NVENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
             + +  K+   +P+P     +SW  LI+ +A++G   KA E F  +LK G +PDH+ FV 
Sbjct: 1402 EMHDVLKM---LPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVS 1458

Query: 367  VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            +L+AC H GLVD+GL Y+ S+  + G+    +H  CI+DLL RSGR   AE  I +MP+ 
Sbjct: 1459 LLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVP 1518

Query: 427  PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            P+   W SLL  CRIHGNL+LA++ AE L E++P + + YV  +N+ A++
Sbjct: 1519 PNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATS 1568



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 250/474 (52%), Gaps = 41/474 (8%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R ++A  +   + H     +   Y S ++ C   R L+ G +V   ++   F   +F+ +
Sbjct: 111 RFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKS 170

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+D ++KCG + DA             SY                  LF  M +RD  S
Sbjct: 171 ALVDFHSKCGKMEDA-------------SY------------------LFGTMMERDVVS 199

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W AMI GY       ++  ++R M      V + +TL SVL A +    L +  +IHG I
Sbjct: 200 WNAMIGGYAVQGFADDSFCMFRSMLR-GGLVPDCYTLGSVLRASAEGGGLIIANQIHGII 258

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE-EG 244
            + G+ S ++V   L + Y K GS+  A+ +   M+ +D+ S TA+I  Y  EG    + 
Sbjct: 259 TQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDA 318

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP-YSFA-ASALV 302
             LF E+ +  I  +      +LN CA+ A+  LG Q+H +  +  Y P Y  A  +AL+
Sbjct: 319 LDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALK--YQPSYDVAMGNALI 376

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY+K G +E++K+ F+ M   +++SWTSLI+GYA++G    A+  ++ +   G +P+ +
Sbjct: 377 DMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDV 436

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ +L AC+H GL  +G + F+++  K+ +   A+HY+C+VDL AR G   EA +++ K
Sbjct: 437 TFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCK 496

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + +K +  LW ++LG   I+G + L K AA  LF ++PEN   YV +A+IY++A
Sbjct: 497 IDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAA 550



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 229/442 (51%), Gaps = 40/442 (9%)

Query: 6   CNQRRLKEALQILHQISHPS---PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           CN  RL EAL++L   S+P+   PS+Y  ++Q C   +A ++G  +H+HL ++GF   + 
Sbjct: 9   CNLGRLAEALKLLS--SNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLH 66

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           ++  L+  Y K G++  A+ +FD M ER V S+  M+SG+++ G  E+A  LF +M    
Sbjct: 67  LNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCG 126

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                      V+ NQ                     FT  S L A ++++CL +G ++ 
Sbjct: 127 -----------VKANQ---------------------FTYGSALRACTSLRCLDMGIQVQ 154

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           G I +  F  +  V SAL D + KCG + +A  +F  M++RDVVSW AMIG Y  +G  +
Sbjct: 155 GCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFAD 214

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           + F +F  +++ G+ P+ +T   VL A A+     +  Q+HG +T++GY  Y      L+
Sbjct: 215 DSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLI 274

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD-KALEYFELLLKSGTQPDH 361
           + Y+K G++ ++K +  GM + DL S T+LI GYA  G+    AL+ F+ + +     D 
Sbjct: 275 NAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDD 334

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           ++   +L  C +      G Q  H+   K+  +Y       ++D+ A+SG   +A+    
Sbjct: 335 VILCSMLNICANLASFALGTQ-IHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFD 393

Query: 422 KMPMKPDKFLWASLLGGCRIHG 443
           +M  K +   W SL+ G   HG
Sbjct: 394 EMEEK-NVISWTSLISGYAKHG 414



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 203/389 (52%), Gaps = 15/389 (3%)

Query: 65   NCLLDMYAKCGNISDA----QTLFDEMQ---ERDVCSYNTMISGFTKGGSLEQARNLFDE 117
            N    + + CG + D     Q L   +Q   E  V   N++IS F+   S+E+A  +FD 
Sbjct: 948  NTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDH 1007

Query: 118  MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
            M + D  SW AMIS Y  +    E+L  +  M++  N  +N  TLSS+LS  S++  L+ 
Sbjct: 1008 MNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE-TNSTTLSSLLSVCSSVDNLKW 1066

Query: 178  GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            G+ IHG +++ G DS+  + + L  +Y + G   +A  +F  M +RD++SW +M+  Y Q
Sbjct: 1067 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 1126

Query: 238  EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            +G+  +G  + +EL++ G   N  TFA  L AC++       K VH  +   G+  +   
Sbjct: 1127 DGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIV 1186

Query: 298  ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
             +ALV MY K G +  +KKV   MP+PD V+W +LI G+A+N  P++A++ ++L+ + G 
Sbjct: 1187 GNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGI 1246

Query: 358  QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT-YTADHYA--CIVDLLARSGRFH 414
              ++I  V VL AC+     D  L++   I     LT + +D Y    ++ + A+ G  +
Sbjct: 1247 PANYITMVSVLGACSAP---DDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLN 1303

Query: 415  EAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +  +   +  K     W +++     HG
Sbjct: 1304 SSNYIFDGLGNK-SPITWNAMVAANAHHG 1331



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 212/460 (46%), Gaps = 51/460 (11%)

Query: 24   PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+  + +SLI  C R     +EG +VH  +  +G    V++   L+  Y   G + +AQ 
Sbjct: 843  PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQ- 901

Query: 83   LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                           LF+EMP  +  SWT+++ GY     P E 
Sbjct: 902  ------------------------------KLFEEMPDHNVVSWTSLMVGYSDSGNPGEV 931

Query: 143  LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            L++Y+ M+  E    N+ T ++V S+   ++   LG ++ G+I++ GF+    V ++L  
Sbjct: 932  LNVYQRMRQ-EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLIS 990

Query: 203  MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            M+    S+ EA  +FD M + D++SW AMI  Y   G   E    F  +       N+ T
Sbjct: 991  MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 1050

Query: 263  FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             + +L+ C+     + G+ +HG + ++G D      + L+ +YS+ G  E+++ VF  M 
Sbjct: 1051 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 1110

Query: 323  RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              DL+SW S++A Y Q+G     L+    LL+ G   +H+ F   L AC++   + +   
Sbjct: 1111 ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES-- 1168

Query: 383  YFHSIKEKHGLTYTADHY------ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                 K  H L   A  +        +V +  + G   EA+ V+  MP +PD+  W +L+
Sbjct: 1169 -----KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALI 1222

Query: 437  GGCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
            GG   H   +    A +A   I  +  PA Y+TM ++  +
Sbjct: 1223 GG---HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGA 1259



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 198/380 (52%), Gaps = 15/380 (3%)

Query: 96   NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            NT+I+ ++K G++E AR +FDEM  R+  SW+ M+SGYVR     EA+ L+  M      
Sbjct: 783  NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGL-GV 841

Query: 156  VSNKFTLSSVLSAVSAIQCLR-LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
              N F ++S+++A S    +   G ++HG++++TG   D  V +AL   YG  G +  A+
Sbjct: 842  EPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQ 901

Query: 215  QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            ++F++M D +VVSWT+++  Y   G   E   ++  + + G+  N  TFA V ++C    
Sbjct: 902  KLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLE 961

Query: 275  AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             + LG QV G++ + G++     A++L+ M+S   +VE +  VF+ M   D++SW ++I+
Sbjct: 962  DQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMIS 1021

Query: 335  GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
             YA +G+  ++L  F  +     + +      +L+ C+    +  G +  H +  K GL 
Sbjct: 1022 AYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWG-RGIHGLVVKLGL- 1079

Query: 395  YTADHYACIVDLL----ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN--LDLA 448
               D   CI + L    + +GR  +AE V   M  + D   W S++  C +     LD  
Sbjct: 1080 ---DSNVCICNTLLTLYSEAGRSEDAELVFQAMTER-DLISWNSMM-ACYVQDGKCLDGL 1134

Query: 449  KRAAEALFEIEPENPATYVT 468
            K  AE L   +  N  T+ +
Sbjct: 1135 KILAELLQMGKVMNHVTFAS 1154



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 3/208 (1%)

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L   S I     GK +H + +    +      + L +MY K G+I  AR +FD+M  R+ 
Sbjct: 751 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC--ADHAAEELGKQVH 283
            SW+ M+  Y + G  EE   LF ++   G+ PN F  A ++ AC  + + A+E G QVH
Sbjct: 811 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE-GFQVH 869

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G++ + G     +  +ALVH Y   G V N++K+F  MP  ++VSWTSL+ GY+ +G P 
Sbjct: 870 GFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPG 929

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTAC 371
           + L  ++ + + G   +   F  V ++C
Sbjct: 930 EVLNVYQRMRQEGVSGNQNTFATVTSSC 957



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 5/208 (2%)

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           GR  E   L S    +  R +   +  +L  C D  A++ G  +H ++   G+       
Sbjct: 12  GRLAEALKLLSS---NPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLN 68

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + L+  Y K G+V  ++ VF+GMP   +VSWT++++GY+QNG  +KA   F  +   G +
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            +   +   L ACT    +D G+Q    I +K          + +VD  ++ G+  +A  
Sbjct: 129 ANQFTYGSALRACTSLRCLDMGIQVQGCI-QKGRFVENLFVKSALVDFHSKCGKMEDASY 187

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +   M M+ D   W +++GG  + G  D
Sbjct: 188 LFGTM-MERDVVSWNAMIGGYAVQGFAD 214



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 255 GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           GIR  NA  F   L   ++  ++  GK +H +      +   F  + L++MYSK GN+E+
Sbjct: 740 GIRCLNAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEH 797

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ VF+ M   +  SW+++++GY + G+ ++A+  F  +   G +P+  +   ++TAC+ 
Sbjct: 798 ARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSR 857

Query: 374 AG-LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           +G + D+G Q  H    K G+         +V      G  + A+ +  +MP   +   W
Sbjct: 858 SGYMADEGFQ-VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP-DHNVVSW 915

Query: 433 ASLLGGCRIHGN 444
            SL+ G    GN
Sbjct: 916 TSLMVGYSDSGN 927


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 166/484 (34%), Positives = 249/484 (51%), Gaps = 73/484 (15%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L + C +   +  G  +H+ +   GF+  +++SN L++MY  CG++  AQ       
Sbjct: 80  YLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQ------- 132

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                    +FDEMP+RD  SW +++ GY +  +  E L ++  
Sbjct: 133 ------------------------KVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEA 168

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGK----------------EIHGYIMRTGFD- 191
           M+       +  T+  V+ A     C  LG+                EI  Y+  T  D 
Sbjct: 169 MR-VAGVKGDAVTMVKVVLA-----CTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDM 222

Query: 192 -------------------SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
                               + V W+A+   YGK G++  AR++FD M  RDV+SWT MI
Sbjct: 223 YGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMI 282

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y Q G+  E   LF E+++S ++P+  T A VL+ACA   + ++G+  H Y+ +    
Sbjct: 283 TSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVK 342

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              +  +AL+ MY KCG VE + +VF  M + D VSWTS+I+G A NG  D AL+YF  +
Sbjct: 343 ADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRM 402

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           L+   QP H  FVG+L AC HAGLVDKGL+YF S+++ +GL     HY C+VDLL+RSG 
Sbjct: 403 LREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGN 462

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
              A + I +MP+ PD  +W  LL   ++HGN+ LA+ A + L E++P N   YV  +N 
Sbjct: 463 LQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNT 522

Query: 473 YASA 476
           YA +
Sbjct: 523 YAGS 526



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 192/387 (49%), Gaps = 38/387 (9%)

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
           YN + S      ++ +A NLF ++ +     W  MI G+   +QP EA+ +Y +M   + 
Sbjct: 14  YNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYR-QG 72

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
            + N  T   +  A + +  +  G  IH  +++ GF+S   V +AL +MYG CG +  A+
Sbjct: 73  LLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQ 132

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC---- 270
           ++FD+M +RD+VSW +++  Y Q  R  E   +F  +  +G++ +A T   V+ AC    
Sbjct: 133 KVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG 192

Query: 271 ----ADHAA---EELGKQVHGYMTRIGYDPYS--------------------FAASALVH 303
               AD      EE   ++  Y+     D Y                      + +A++ 
Sbjct: 193 EWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIM 252

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            Y K GN+  ++++F+ M + D++SWT++I  Y+Q G   +AL  F+ +++S  +PD I 
Sbjct: 253 GYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEIT 312

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVIS 421
              VL+AC H G +D G +  H   +K+ +   AD Y    ++D+  + G   +A +V  
Sbjct: 313 VASVLSACAHTGSLDVG-EAAHDYIQKYDV--KADIYVGNALIDMYCKCGVVEKALEVFK 369

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLA 448
           +M  K D   W S++ G  ++G  D A
Sbjct: 370 EM-RKKDSVSWTSIISGLAVNGFADSA 395



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 130/271 (47%), Gaps = 11/271 (4%)

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +I +A  +F ++    +  W  MI  +    +  E   +++ + + G+  N  T+  +  
Sbjct: 26  TILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFK 85

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           ACA       G  +H  + ++G++ + + ++AL++MY  CG++  ++KVF+ MP  DLVS
Sbjct: 86  ACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVS 145

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT---HAGLVDKGLQYFH 385
           W SL+ GY Q     + L  FE +  +G + D +  V V+ ACT     G+ D  + Y  
Sbjct: 146 WNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYI- 204

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
              E++ +         ++D+  R G  H A  V  +M  + +   W +++ G    GNL
Sbjct: 205 ---EENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWR-NLVSWNAMIMGYGKAGNL 260

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
             A+   +A+ +    +  ++  M   Y+ A
Sbjct: 261 VAARELFDAMSQ---RDVISWTNMITSYSQA 288



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 10  RLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           +  EAL++  ++      P     +S++  C    +L+ G+  H +++    K  +++ N
Sbjct: 290 QFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGN 349

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
            L+DMY KCG +  A  +F EM+++D  S+ ++ISG    G  + A + F  M
Sbjct: 350 ALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRM 402


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 244/453 (53%), Gaps = 32/453 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HPS     S++  C     L +G+ +H  +   G     FIS  LLDMYAKC  + DA  
Sbjct: 220 HPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDA-- 277

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                        R +FDE+   D   WTAMI GY +  +P++A
Sbjct: 278 -----------------------------RRVFDELEFVDIVLWTAMIVGYTQNKRPLDA 308

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L L+ + + F + V N  T+++V+SA + ++ L LG+ +H   ++ G    +VV +AL D
Sbjct: 309 LQLF-LHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVD 367

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KC ++ EA  IF +++ +DVV+W +M+  Y + G   E   LF+ +   GI P+A +
Sbjct: 368 MYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAIS 427

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
               L+AC   A   +GK  H Y  +  +    +  +AL+++YSKC ++ ++++VFN M 
Sbjct: 428 VVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMT 487

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             + V+W+++I GY   G    +++ F  +LK    P+ +VF  +L+AC+H G+V  G +
Sbjct: 488 DRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKE 547

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+     +T +  HYAC+VD++AR+G   EA + I  MP+K    +W S L GC++H
Sbjct: 548 YFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLH 607

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             L+  + A + +  + PE P  YV M+N+Y S
Sbjct: 608 SRLEFGEEAIKKMAALHPETPDFYVLMSNLYTS 640



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 175/342 (51%), Gaps = 4/342 (1%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR-MMQNFENSV 156
           ++S +   G L  AR + D  P+ D +++  M+   V      +A+ L+R M +    + 
Sbjct: 61  LLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAA 120

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
                LS  L A       R G+ +H  +++ G  +D  V ++L DMY K G +  AR++
Sbjct: 121 QADVVLSLALKACVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKV 179

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           FD++ +R+VVSWT+M+    Q G  EEG  LF+E+ +  + P+ +T   VL ACA     
Sbjct: 180 FDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGL 239

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
             G+ +HG + + G    SF +++L+ MY+KC  VE++++VF+ +   D+V WT++I GY
Sbjct: 240 HQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGY 299

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
            QN  P  AL+ F         P+ +    V++A      +  G +  H+I  K G   +
Sbjct: 300 TQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLG-RSVHAIGVKLGTMES 358

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                 +VD+ A+     EA  +  ++ +K D   W S++ G
Sbjct: 359 DVVRNALVDMYAKCQALPEANSIFGRILIK-DVVAWNSMMAG 399


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 277/511 (54%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +  L    R +EAL +   + +       + Y+S +  C +  +L  GK++H+ +  S  
Sbjct: 266 VSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLP 325

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               ++++ ++++YAKCG                                 ++AR +F  
Sbjct: 326 CIDPYVASAMVELYAKCG-------------------------------CFKEARRVFSS 354

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R+  SWT +I G+++Y    E+L+L+  M+  E    ++F L++++S  S    + L
Sbjct: 355 LRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRA-ELMTVDQFALATIISGCSNRMDMCL 413

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT-------- 229
            +++H   +++G     V+ ++L  MY KCG++  A  IF  M +RD+VSWT        
Sbjct: 414 ARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQ 473

Query: 230 -----------------------AMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAG 265
                                  AM+G Y Q G  E+G  ++S ++ +  + P+  T+  
Sbjct: 474 VGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVT 533

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G+  ++G    +   +A++ MYSKCG +  ++K+F+ + R D
Sbjct: 534 LFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKD 593

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           LVSW ++I GY+Q+GM  +A+E F+ +LK G +PD+I +V VL++C+H+GLV +G  YF 
Sbjct: 594 LVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFD 653

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +K  H ++   +H++C+VDLLAR+G   EA+++I +MPMKP   +W +LL  C+ HGN 
Sbjct: 654 MLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNN 713

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ AA+ LF+++  +   Y+ +A IYA A
Sbjct: 714 ELAELAAKHLFDLDSPDSGGYMLLAKIYADA 744



 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 218/460 (47%), Gaps = 43/460 (9%)

Query: 49  HSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF-DEMQERDVCSYNTMISGFTKGGS 107
           H  L S G    VF+ N LL  Y  CG + DA+ L   ++ E +V ++N M++G+ K GS
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L  A  LF  MP+RD  SW  ++SGY +  + ++A++ +  M+   +S+ N FT    + 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS------------------ 209
           +  A+    +  ++ G + + GF  D  V + + DM+ +CG+                  
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 210 -------------INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
                        ++ A ++F+ M +RDVVSW  M+    Q GR  E  ++  ++   G+
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGNVENS 314
           R ++ T+   L ACA  ++   GKQ+H  + R     DPY   ASA+V +Y+KCG  + +
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPY--VASAMVELYAKCGCFKEA 348

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           ++VF+ +   + VSWT LI G+ Q G   ++LE F  +       D      +++ C++ 
Sbjct: 349 RRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNR 408

Query: 375 GLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
             +D  L +  HS+  K G T        ++ + A+ G    AE + S M  + D   W 
Sbjct: 409 --MDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEER-DIVSWT 465

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            +L      GN+    +A E    +   N  T+  M   Y
Sbjct: 466 GMLTAYSQVGNIG---KAREFFDGMSTRNVITWNAMLGAY 502



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 39/232 (16%)

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-------------- 308
            A  L +C    A    + +HG +  +G     F  + L+H Y  C              
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 309 ------------------GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                             G++ +++++F  MPR D+ SW +L++GY Q+G    A+E F 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 351 LLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
            + +SG + P+   F   + +C   G  +  LQ    +  K G     D    IVD+  R
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLL-GLLTKFGFQGDPDVATGIVDMFVR 209

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
            G    A    S++  +P  F   S+L G      +D A      LFE  PE
Sbjct: 210 CGAVDFASKQFSQIE-RPTVFCRNSMLAGYAKSYGVDHALE----LFESMPE 256


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 149/462 (32%), Positives = 263/462 (56%), Gaps = 34/462 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++  Q   P+    SS+++ CR  + L  G  VH  +   G +  +++ N L++MYA C 
Sbjct: 101 EMFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCS 160

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                                          ++E A  +F ++  +++ +WT +I+G+  
Sbjct: 161 V------------------------------TMEAAFLIFRDIKVKNDVTWTTLITGFTH 190

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
               I  L +Y+ M   EN+    + ++  + A ++I  +  GK+IH  +++ GF S+  
Sbjct: 191 LGDGIGGLKMYKQML-LENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLP 249

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +++ D Y +CG ++EA++ F +M D+D+++W  +I    +     E   +F      G
Sbjct: 250 VMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQG 308

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
             PN +TF  ++ ACA+ AA   G+Q+HG + R G++     A+AL+ MY+KCG++ +S+
Sbjct: 309 FVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSE 368

Query: 316 KVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +VF  +  R +LVSWTS++ GY  +G   +A+E F+ ++ SG +PD IVF+ VL+AC HA
Sbjct: 369 RVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHA 428

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLV+KGL+YF+ ++ ++G+    D Y C+VDLL R+G+  EA +++ +MP KPD+  W +
Sbjct: 429 GLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGA 488

Query: 435 LLGGCRIHGNLDLAKR-AAEALFEIEPENPATYVTMANIYAS 475
           +LG C+ H +  L  R AA+ + E++P    TYV ++ IYA+
Sbjct: 489 ILGACKAHKHTGLISRLAAKKVMELKPRMVGTYVMLSYIYAA 530



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 181/360 (50%), Gaps = 11/360 (3%)

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
           ++  + + N ++S F KG  +E+AR+LFDEMP+RD  +WTAMI+GY   N    A + + 
Sbjct: 42  KKHHILATNLIVSYFEKG-LVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFH 100

Query: 148 MMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
            M  F+   S N+FTLSSVL +   ++ L  G  +HG +++ G +    V +AL +MY  
Sbjct: 101 EM--FKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYAT 158

Query: 207 CGSINEAR-QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI--KSGIRPNAFTF 263
           C    EA   IF  +  ++ V+WT +I  +   G    G  ++ +++   + + P   T 
Sbjct: 159 CSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITI 218

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A   +A  D      GKQ+H  + + G+       ++++  Y +CG +  +K+ F+ M  
Sbjct: 219 AVRASASIDSVTT--GKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMED 276

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DL++W +LI+   ++    +AL  F+     G  P+   F  ++ AC +   ++ G Q 
Sbjct: 277 KDLITWNTLISELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCG-QQ 334

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    + G     +    ++D+ A+ G   ++E V  ++  + +   W S++ G   HG
Sbjct: 335 LHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHG 394



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 167/330 (50%), Gaps = 40/330 (12%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK   Q+L + +  +P   +  ++      ++  GK++H+ +   GF+  + + N +LD 
Sbjct: 198 LKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDF 257

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y +CG +S+A+  F EM+++D+ ++NT+IS   +  S E                  A++
Sbjct: 258 YCRCGYLSEAKRYFHEMEDKDLITWNTLISELERSDSSE------------------ALL 299

Query: 131 SGYVRYNQPIEALDLYRMMQNFENS--VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                            M Q FE+   V N +T +S+++A + I  L  G+++HG I R 
Sbjct: 300 -----------------MFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRR 342

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFAL 247
           GF+ +  + +AL DMY KCG I ++ ++F ++ + R++VSWT+M+  Y   G   E   L
Sbjct: 343 GFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVEL 402

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYS 306
           F +++ SGIRP+   F  VL+AC      E G +    M +  G +P     + +V +  
Sbjct: 403 FDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLG 462

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           + G +  + ++   MP +PD  +W +++  
Sbjct: 463 RAGKIGEAYELVERMPFKPDESTWGAILGA 492


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 252/453 (55%), Gaps = 34/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS++    +    + G +VH        +  VFISN L+DMYA           
Sbjct: 340 PNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYA----------- 388

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                               K GS   A  +F++M  R+  SW AMI+ + R     EA+
Sbjct: 389 --------------------KSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAV 428

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L R MQ  +    N  T ++VL A + +  L +GKEIH  I+R G   D  V +AL+DM
Sbjct: 429 ELVRQMQA-KGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDM 487

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +N A+ +F+  V RD VS+  +I  Y +     E   LFSE+   G+RP+  +F
Sbjct: 488 YSKCGCLNLAQNVFNISV-RDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSF 546

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            GV++ACA+ A    GK++HG + R  +  + F A++L+ +Y++CG ++ + KVF  +  
Sbjct: 547 MGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQN 606

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+ SW ++I GY   G  D A+  FE + + G + D + FV VL+AC+H GL++KG +Y
Sbjct: 607 KDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKY 666

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  + + + +  T  HYAC+VDLL R+G   EA D+I  + + PD  +W +LLG CRIHG
Sbjct: 667 FKMMCDLN-IEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHG 725

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++L   AAE LFE++P++   Y+ ++N+YA A
Sbjct: 726 NIELGLWAAEHLFELKPQHCGYYILLSNMYAEA 758



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 194/400 (48%), Gaps = 34/400 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  +++ C     + +G++VH      GF   VF+ N LL  Y  CG   DA   
Sbjct: 135 PDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAM-- 192

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         +FDEMP+RD  SW  +I     +    EAL
Sbjct: 193 -----------------------------KVFDEMPERDKVSWNTVIGLCSLHGFYEEAL 223

Query: 144 DLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALS 201
             +R+M   +  +  +  T+ SVL   +  +   + + +H Y ++ G     V V +AL 
Sbjct: 224 GFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALV 283

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+YGKCGS   ++++FD++ +R+V+SW A+I  +   G+  +   +F  +I  G+RPN+ 
Sbjct: 284 DVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSV 343

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T + +L    +    +LG +VHG+  ++  +   F +++L+ MY+K G+   +  +FN M
Sbjct: 344 TISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKM 403

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              ++VSW ++IA +A+N +  +A+E    +   G  P+++ F  VL AC   G ++ G 
Sbjct: 404 GVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVG- 462

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           +  H+   + G +        + D+ ++ G  + A++V +
Sbjct: 463 KEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN 502



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 187/413 (45%), Gaps = 45/413 (10%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLDMYAKCGNIS 78
           Q S+P      +L+Q C     L + K+VH++    GF P  V +   L+  YA  G+ S
Sbjct: 33  QTSNPP-----NLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPS 87

Query: 79  DAQTLFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           ++  LF       R    +NT+I   +  G       +FD               G+  Y
Sbjct: 88  NSLLLFQHSVAYSRSAFLWNTLIRANSIAG-------VFD---------------GFGTY 125

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
           N  + A               ++ T   VL   S    +R G+E+HG   + GFD D  V
Sbjct: 126 NTMVRA-----------GVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFV 174

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI--KS 254
            + L   YG CG   +A ++FD+M +RD VSW  +IG     G  EE    F  ++  K 
Sbjct: 175 GNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKP 234

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVEN 313
           GI+P+  T   VL  CA+   + + + VH Y  ++G    +    +ALV +Y KCG+ + 
Sbjct: 235 GIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKA 294

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           SKKVF+ +   +++SW ++I  ++  G    AL+ F L++  G +P+ +    +L     
Sbjct: 295 SKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGE 354

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            GL   G++  H    K  +         ++D+ A+SG    A  + +KM ++
Sbjct: 355 LGLFKLGME-VHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVR 406



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA-LVHM 304
           + FS  +++   PN      +L  C         KQVH Y    G+ P S +  A L+  
Sbjct: 26  SFFSTSLQTSNPPN------LLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQ 79

Query: 305 YSKCGNVENSKKVFN---GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           Y+  G+  NS  +F       R   + W +LI   +  G+ D     +  ++++G +PD 
Sbjct: 80  YASFGHPSNSLLLFQHSVAYSRSAFL-WNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDE 137

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
             +  VL  C+    V KG +  H +  K G          ++      G F +A  V  
Sbjct: 138 CTYPFVLKVCSDFVEVRKGRE-VHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFD 196

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
           +MP + DK  W +++G C +HG  + A      +   +P      VT+ ++
Sbjct: 197 EMPER-DKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSV 246


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 158/403 (39%), Positives = 234/403 (58%), Gaps = 4/403 (0%)

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           IS    LF      D  + N +++ + +   ++ A +LFDEM + +  SWT+++SGYV  
Sbjct: 26  ISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNM 85

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
            +P  AL LY  M   E S  N FTL++V+++ S +  L+ GK +H ++   G   + VV
Sbjct: 86  GRPQSALWLYTKMSESEVS-PNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVV 144

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            S+L DMYGKC  ++ AR +FD M  R+VVSWTAMI  Y Q G+  E   +F E     +
Sbjct: 145 CSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMM 204

Query: 257 -RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
            RPN F  A V+NACA       GK  HG + R GY+     ASALV MY+KCG+   S+
Sbjct: 205 ERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSE 264

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           KVF  +  P ++ +TS+I G A+ G+   +L  FE +      P+ + FVG+L AC+H+G
Sbjct: 265 KVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHACSHSG 324

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK--FLWA 433
           LVD+GL+  +S+ EKHG+     HY C+VD+L+R GR  EA  +   + + P++   LW 
Sbjct: 325 LVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALLWG 384

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LL   R+HG +D+A  A++ L E   +    YVT++N Y  A
Sbjct: 385 TLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLA 427



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 178/360 (49%), Gaps = 39/360 (10%)

Query: 7   NQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N  R + AL +  ++S     P+    +++I  C     L+ GK VH+H++  G +  + 
Sbjct: 84  NMGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLV 143

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + + L+DMY KC ++  A+ +FD M  R+V S+  MI+G+ + G                
Sbjct: 144 VCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNG---------------- 187

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                    GY       EAL+++R   ++     N F L+SV++A +++  L  GK  H
Sbjct: 188 --------KGY-------EALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTH 232

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           G ++R G++ ++VV SAL DMY KCGS   + ++F ++ +  V+ +T+MI    + G  +
Sbjct: 233 GAVIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGK 292

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASAL 301
               LF E+    + PN  TF G+L+AC+     + G ++   M  + G  P     + +
Sbjct: 293 LSLNLFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCV 352

Query: 302 VHMYSKCGNVENSKKVFNGM---PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           V M S+ G ++ + K+   +   P    + W +L++    +G  D A+E  + L++   Q
Sbjct: 353 VDMLSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQ 412


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 256/458 (55%), Gaps = 36/458 (7%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H + + +    SSL+  CR    L + ++VH+ + ++G    + ++N LL MY + G + 
Sbjct: 47  HVLHYDTKRFRSSLLS-CRN---LFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALE 102

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           DAQ LFD M +R   S++ ++ G+ K G+      +F E+               +R   
Sbjct: 103 DAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFREL---------------LRSGA 147

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           P+                 + ++   V+ A   ++ L+ G+ IH   ++ G D    V +
Sbjct: 148 PL-----------------DDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCA 190

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
            L DMY +C  + +A QIF KM  RD+ +WT MIG   + G   E    F  +   GI P
Sbjct: 191 TLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVP 250

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           +      V+ ACA   A    K +H Y+   GY       +A++ MY+KCG+VE+++ +F
Sbjct: 251 DKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIF 310

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + M   ++++W+++IA Y  +G  +KALE F ++L+SG  P+ I FV +L AC+HAGL++
Sbjct: 311 DRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIE 370

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G ++F S+ +++G+T    HY C+VDLL R+GR  EA ++I  MP++ D+ LW +LLG 
Sbjct: 371 EGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGA 430

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           CRIH +LDLA+R A +L +++ + P  YV ++NIYA+A
Sbjct: 431 CRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANA 468


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 247/446 (55%), Gaps = 53/446 (11%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C  +  L  GK VHS    S F+  +  SN LLDMY+KC                
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC---------------- 299

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                          G L+ A  +F++M +R+  SWT+MI+GY R      A+ L + M+
Sbjct: 300 ---------------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME 344

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    +   ++S+L A +    L  GK++H YI      S+  V +AL DMY KCGS+
Sbjct: 345 K-EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSM 403

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A  +F  MV +D++SW  M+G                      ++P++ T A +L AC
Sbjct: 404 EGANSVFSTMVVKDIISWNTMVGE---------------------LKPDSRTMACILPAC 442

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  +A E GK++HGY+ R GY      A+ALV +Y KCG +  ++ +F+ +P  DLVSWT
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +IAGY  +G  ++A+  F  +  +G +PD + F+ +L AC+H+GL+++G ++F+ +K  
Sbjct: 503 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             +    +HYAC+VDLL+R+G   +A   I  +P+ PD  +W +LL GCRI+ +++LA++
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEK 622

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            AE +FE+EPEN   YV +ANIYA A
Sbjct: 623 VAERVFELEPENTGYYVLLANIYAEA 648



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 223/467 (47%), Gaps = 58/467 (12%)

Query: 5   LCNQRRLKEALQI--LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
            C    L+ A+++  + Q S      Y S++Q C   ++L +GKKVHS +KS+       
Sbjct: 76  FCQLGDLENAMELVCMCQKSELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEA 135

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL-------------- 108
           +   L+  YA CG++ + + +FD M++++V  +N M+S + K G                
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 109 ------EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
                 E A  LFD++  RD  SW +MISGYV        L +Y+ M      V +  T+
Sbjct: 196 IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATI 254

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
            SVL   +    L LGK +H   +++ F+      + L DMY KCG ++ A ++F+KM +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R+VVSWT+MI  Y ++G  +    L  ++ K G++ +      +L+ACA   + + GK V
Sbjct: 315 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H Y+         F  +AL+ MY+KCG++E +  VF+ M   D++SW +++         
Sbjct: 375 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG-------- 426

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT----YTAD 398
                  EL      +PD      +L AC     +++G       KE HG      Y++D
Sbjct: 427 -------EL------KPDSRTMACILPACASLSALERG-------KEIHGYILRNGYSSD 466

Query: 399 HYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +    +VDL  + G    A  +   +P K D   W  ++ G  +HG
Sbjct: 467 RHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHG 512


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 242/454 (53%), Gaps = 33/454 (7%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P     ++ I  C +   L+ G+++H  L +SGF+   F+S  L+DMY KCG       
Sbjct: 204 EPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQ------ 257

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                    LE A  +F++MP +   +W +MI+GY      I  
Sbjct: 258 -------------------------LEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISC 292

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + L++ M +     +     S++++   + Q L  GK +HGYI+R     D  + S+L D
Sbjct: 293 IQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLE-GKFVHGYIIRNRIQPDIFLNSSLMD 351

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y KCG +  A  IF  M     VSW  MI  Y  EG+  +   LF E+ KS + P+A T
Sbjct: 352 LYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAIT 411

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  VL AC+  AA E G+++H  +             AL+ MY+KCG VE +  VF  +P
Sbjct: 412 FTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP 471

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DLVSWTS+I  Y  +G   +ALE F  +L+S  +PD + F+ +L+AC+HAGLVD GL 
Sbjct: 472 ERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLY 531

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRI 441
           +F+ +   +G+    +HY+C++ LL R+GR HEA +++   P   D F L ++L   CR+
Sbjct: 532 HFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRL 591

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           H NLDL    AE L + +P++ +TY+ ++N+YAS
Sbjct: 592 HKNLDLGVEIAENLIDKDPDDSSTYIILSNMYAS 625



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 208/432 (48%), Gaps = 40/432 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+++ C   R +  G+ +H+ L   G    + + + L+ MYAKC     A  L
Sbjct: 104 PDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKL 163

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FDEM ++DV  +NT+IS + + G  E                               EAL
Sbjct: 164 FDEMPDKDVACWNTVISCYYQSGKFE-------------------------------EAL 192

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             + MM+ F     +  T+++ +S+ + +  L  G+EIH  ++ +GF  D  V +AL DM
Sbjct: 193 RYFGMMRRFGFE-PDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDM 251

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG +  A ++F++M ++ VV+W +MI  Y  +G       LF  +   G++P   T 
Sbjct: 252 YGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTL 311

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L AC+  A    GK VHGY+ R    P  F  S+L+ +Y KCG VE+++ +F  MP+
Sbjct: 312 TSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPK 371

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
              VSW  +I+GY   G    AL  F  + KS  +PD I F  VL AC+    ++KG + 
Sbjct: 372 TTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGRE- 430

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H++  +  L         ++D+ A+ G   EA  V   +P + D   W S++     HG
Sbjct: 431 IHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPER-DLVSWTSMITAYGSHG 489

Query: 444 NLDLAKRAAEAL 455
                 R  EAL
Sbjct: 490 ------RVYEAL 495



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 195/420 (46%), Gaps = 34/420 (8%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L++    +++L++GK +H  + + G +  V++   L+ +Y  C        LFD      
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSC-------NLFD------ 55

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW-TAMISGYVRYNQPIEALDLYRMMQ 150
                              A+N+FD +      S    +++GY R     EAL L+  + 
Sbjct: 56  ------------------YAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLM 97

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
            +     + +T  SVL A   ++ + LG+ IH  +++ G   D VV S+L  MY KC   
Sbjct: 98  CYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEF 157

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A ++FD+M D+DV  W  +I  Y+Q G+ EE    F  + + G  P++ T    +++C
Sbjct: 158 ECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSC 217

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A     + G+++H  +   G+   SF ++ALV MY KCG +E + +VF  MP   +V+W 
Sbjct: 218 ARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWN 277

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+I GY   G     ++ F+ +   G +P        L AC+ +  + +G ++ H    +
Sbjct: 278 SMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEG-KFVHGYIIR 336

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           + +       + ++DL  + G+   AE +   MP K     W  ++ G    G L  A R
Sbjct: 337 NRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMP-KTTTVSWNVMISGYVTEGKLFDALR 395


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 275/494 (55%), Gaps = 37/494 (7%)

Query: 1   AIDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           AI       + KEA  +  Q+      P+    SS ++ C +      G  +H  ++  G
Sbjct: 72  AIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFG 131

Query: 57  FK---PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           F     G+++   L+D Y K G++  A+ +FDEM ER+V S+N+M++G+ K G L  A+ 
Sbjct: 132 FSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQR 191

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNFEN---SVSNKFTLSSVLSA 168
           +FDE+PQ+D  SW +MISGY R     +AL L++ M  +NF +    +S       + SA
Sbjct: 192 VFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSA 251

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
                             R+ FD+    + V W  +   Y KCG ++ A ++FD++  +D
Sbjct: 252 ------------------RSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKD 293

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPNAFTFAGVLNACADHAAEELGKQV 282
           ++ + AMI  Y Q  R +E   LF+ ++     ++P+  T A V++AC+       G  +
Sbjct: 294 LLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWI 353

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
             YM R+G +     A+AL+ +Y+KCG+++ + ++F+G+ + DLV++T++I G   NG  
Sbjct: 354 ESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKA 413

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
             A++ F+ ++ +   P+ I F+G+LTA  HAGLV++G + F S+K K+ L  + DHY  
Sbjct: 414 IDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGI 472

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           +VDLL R+GR  EA ++I  MPM+P   +W +LL  CR+H N++  + AA+  FE+EP+ 
Sbjct: 473 MVDLLGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDT 532

Query: 463 PATYVTMANIYASA 476
                 ++NIYAS 
Sbjct: 533 TGYXSLLSNIYASG 546



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 179/385 (46%), Gaps = 34/385 (8%)

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D+FSW   I    ++ Q  EA  LY  MQ +       F LSS L A + I     G  I
Sbjct: 65  DSFSWACAIRFSTQHGQFKEAFALYVQMQRW-GLWPTTFALSSALKACARIAYRMGGLSI 123

Query: 182 HGYIMRTGFD--SDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           HG + + GF    D + V +AL D Y K G +  AR++FD+M +R+VVSW +M+  Y + 
Sbjct: 124 HGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS 183

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ------------VHGYM 286
           G       +F E+ +  +       +G   A     A  L +Q            + GY+
Sbjct: 184 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYV 243

Query: 287 -------TRIGYDPY----SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
                   R  +D      + +   ++  YSKCG+V+++ ++F+ +   DL+ + ++IA 
Sbjct: 244 EFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIAC 303

Query: 336 YAQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           YAQN  P +AL+ F  +L      QPD +    V++AC+  G +  G  +  S   + G+
Sbjct: 304 YAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFG-PWIESYMRRLGI 362

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN-LDLAKRAA 452
                    ++DL A+ G   +A ++   +  K D   + +++ GC I+G  +D  K   
Sbjct: 363 EMDGHLATALLDLYAKCGSIDKAYELFHGL-RKKDLVAYTAMILGCGINGKAIDAIKLFD 421

Query: 453 EAL-FEIEPENPATYVTMANIYASA 476
           E +  +I P N  T++ +   Y  A
Sbjct: 422 EMVDAQIFP-NLITFIGLLTAYNHA 445


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/413 (36%), Positives = 244/413 (59%), Gaps = 10/413 (2%)

Query: 65  NCLLDMYAKC-GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           N +L  Y K  G + +A  LFD++ E D  SYN M+  + +   ++ A   F++MP +D 
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDI 167

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SW  +ISG+ +  Q  +A DL+ +M        N  + S+++S       L   +E++ 
Sbjct: 168 ASWNTLISGFAQNGQMQKAFDLFSVMPE-----KNGVSWSAMISGYVEHGDLEAAEELYK 222

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            +   G  S  VV +A+   Y K G +  A +IF +M  +++V+W +MI  Y +  R E+
Sbjct: 223 NV---GMKS-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAED 278

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
           G  +F  +I+S +RPN  + + VL  C++ +A  LG+Q+H  +++      + A ++L+ 
Sbjct: 279 GLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLIS 338

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY KCG+++++ K+F  MPR D+++W ++I+GYAQ+G   KAL  F+ +     +PD I 
Sbjct: 339 MYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWIT 398

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           FV V+ AC HAG VD G+QYF S+K++ G+     HY C++DLL R+GR  EA  +I +M
Sbjct: 399 FVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P  P   ++ +LLG CRIH NLDLA+ AA  L  ++P +   YV +ANIYA+ 
Sbjct: 459 PFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 141/314 (44%), Gaps = 37/314 (11%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ++++A  +   +   +   +S++I    ++  LE  ++++   K+ G K  V +   +L 
Sbjct: 182 QMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY---KNVGMK-SVVVETAMLT 237

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y K G +  A+ +F  M  +++ ++N+MI+G+ +    E    +F             M
Sbjct: 238 GYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFK-----------TM 286

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I   VR                      N  +LSSVL   S +  L LG+++H  + ++ 
Sbjct: 287 IESRVR---------------------PNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSP 325

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
              D    ++L  MY KCG ++ A ++F +M  +DV++W AMI  Y Q G   +   LF 
Sbjct: 326 LSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFD 385

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKC 308
           ++    ++P+  TF  V+ AC      +LG Q    M +  G +      + ++ +  + 
Sbjct: 386 KMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRA 445

Query: 309 GNVENSKKVFNGMP 322
           G ++ +  +   MP
Sbjct: 446 GRLDEAVSLIKEMP 459



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 133/326 (40%), Gaps = 71/326 (21%)

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ-EGRREEGFALFSE 250
           SD V  +     + +   +  AR +F+KM  R  V+W  M+  Y +  G+ +E   LF +
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 251 LIKSGIRPNAFTFA----------GVLNACA--------DHAAEEL---GKQVHGYMTRI 289
           + +    P++ ++           GV  A A        D A+      G   +G M + 
Sbjct: 131 IPE----PDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQK- 185

Query: 290 GYDPYS-------FAASALVHMYSKCGNVENSKKVFNG---------------------- 320
            +D +S        + SA++  Y + G++E +++++                        
Sbjct: 186 AFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKV 245

Query: 321 ---------MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
                    M   +LV+W S+IAGY +N   +  L+ F+ +++S  +P+ +    VL  C
Sbjct: 246 ELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGC 305

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           ++   +  G Q  H +  K  L+        ++ +  + G    A  +  +MP K D   
Sbjct: 306 SNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK-DVIT 363

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFE 457
           W +++ G   HG    A R A  LF+
Sbjct: 364 WNAMISGYAQHG----AGRKALHLFD 385


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 247/471 (52%), Gaps = 48/471 (10%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P    Y  L + C +   +  G ++  H+   GF   +F+SN ++ +   CG+     
Sbjct: 75  TKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGD----- 129

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                     L+ AR +FD+   RD  SW +MI+GYVR     E
Sbjct: 130 --------------------------LDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYE 163

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           AL+ YR M+  E    ++ T+  V+S+ + ++ L LG+E H YI   G      + +AL 
Sbjct: 164 ALNFYREMK-VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALM 222

Query: 202 DMYGKCGSINEARQIFDKMV----------------DRDVVSWTAMIGRYFQEGRREEGF 245
           DMY KCG++  AR++FD M                 D+DVV W AMIG Y    R +E  
Sbjct: 223 DMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEAL 282

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           ALF+E+    I P+  T    L+AC+   A ++G  +H Y+ +          +AL+ MY
Sbjct: 283 ALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMY 342

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG +  + +VF  +P  + ++WT++I+G A +G    A+ YF  ++ +   PD + F+
Sbjct: 343 AKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFL 402

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G+L+AC H GLV++G +YF  +  K  L+    HY+C+VDLL R+G   EAE++I  MP+
Sbjct: 403 GLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPI 462

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + D  +W +L   CRIHGN+ + +RAA  L +++P +   YV +AN+Y  A
Sbjct: 463 EADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEA 513



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 180/353 (50%), Gaps = 18/353 (5%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L+   N+       + FSW   I G++    P EA+ LY+ +   + +  + +T   +  
Sbjct: 28  LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           A + +  +R+G EI G+++  GFDSD  V +A+  +   CG ++ AR++FDK   RD+VS
Sbjct: 88  ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W +MI  Y + G   E    + E+   GI+P+  T  GV+++CA     +LG++ H Y+ 
Sbjct: 148 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIE 207

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNG----------------MPRPDLVSWTS 331
             G       A+AL+ MY KCGN+E+++K+F+                 MP  D+V W +
Sbjct: 208 ENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNA 267

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I GY       +AL  F  +      PD +  V  L+AC+  G +D G+   H I EKH
Sbjct: 268 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI-EKH 326

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            L+        ++D+ A+ G+  +A  V  ++P + +   W +++ G  +HGN
Sbjct: 327 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGN 378



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 19/203 (9%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R KEAL + +++     +P      S +  C Q  AL+ G  +H +++       V +  
Sbjct: 277 RGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGT 336

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---- 121
            L+DMYAKCG I+ A  +F E+  R+  ++  +ISG    G+   A   F EM       
Sbjct: 337 ALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMP 396

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLG- 178
           D  ++  ++S         E    +  M       S+KF LS  L   S +  L  R G 
Sbjct: 397 DEVTFLGLLSACCHGGLVEEGRKYFSQM-------SSKFNLSPKLKHYSCMVDLLGRAGL 449

Query: 179 -KEIHGYIMRTGFDSDEVVWSAL 200
            +E    I     ++D VVW AL
Sbjct: 450 LEEAEELIKSMPIEADAVVWGAL 472


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 264/476 (55%), Gaps = 38/476 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ++ LC+ R +     +   +  P+  ++ S    C +    + G+++H      G    +
Sbjct: 282 LEALCHFREM-----LSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F    L DMYAKCG                                LE AR +F  + + 
Sbjct: 337 FAGCSLCDMYAKCG-------------------------------FLESARTVFYHIEKP 365

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  +W A+I+G+   +   E+   +  M++    V N  T+ S+L A S    L  G ++
Sbjct: 366 DLVAWNAIIAGFASVSNAKESSSFFSQMRH-TGLVPNDVTVLSLLCACSEPVMLNHGIQV 424

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGR 240
           H YI++ GF+ D  V ++L  MY KC ++N+A Q+F+ + ++ D+VSW  ++    Q+ +
Sbjct: 425 HSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E   L   +  S I+P+  T   VL +    A+ E+G Q+H ++ + G +     ++A
Sbjct: 485 AGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA 544

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L++MY+KCG++E ++K+F+ +  PD++SW+SLI GYAQ G   +A E F  +   G +P+
Sbjct: 545 LINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPN 604

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I FVG+LTAC+H G+V++GL+ + +++E + ++ T +H +C+VDLLAR+G    AED I
Sbjct: 605 EITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFI 664

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +MP  PD  +W +LL  C++HGNL++ KRAAE + +I+P N A  V + NI+AS+
Sbjct: 665 KQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASS 720



 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 239/480 (49%), Gaps = 45/480 (9%)

Query: 5   LCNQRRLKEALQILHQI----SHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           LC +   +EAL+         S P  S+ Y+ LI  C   R+LE G+K+H H+ +  ++P
Sbjct: 72  LCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQP 131

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            + + N +L MY KCG                               SL++ARN+FD MP
Sbjct: 132 DMILQNHILSMYGKCG-------------------------------SLKEARNMFDSMP 160

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
            ++  SWT+MISGY RY +   A+ LY  M      + + FT  S++ + S +   +L +
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLR-SGHIPDHFTFGSIVKSCSGLDDFKLAR 219

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           ++H +++++ F +D +  +AL  MY K   + +A  +F +++ +D++SW +MI  + Q G
Sbjct: 220 QLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLG 279

Query: 240 RREEGFALFSELIKSGI-RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              E    F E++   + +PN F F    +AC+     + G+Q+HG   + G     FA 
Sbjct: 280 YELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAG 339

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            +L  MY+KCG +E+++ VF  + +PDLV+W ++IAG+A      ++  +F  +  +G  
Sbjct: 340 CSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLV 399

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+ +  + +L AC+   +++ G+Q  HS   K G          ++ + ++    ++A  
Sbjct: 400 PNDVTVLSLLCACSEPVMLNHGIQ-VHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQ 458

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF--EIEPENPATYVTMANIYASA 476
           V   +  K D   W +LL  C          R  + +F   I+P+    +VT+ N+  S+
Sbjct: 459 VFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPD----HVTLTNVLVSS 514



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 3/349 (0%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+ + N +IS +TK   +  A N+F  +  +D  SW +MI+G+ +    +EAL  +R M 
Sbjct: 233 DLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREML 292

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +      N+F   S  SA S +     G++IHG  ++ G  SD     +L DMY KCG +
Sbjct: 293 SQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFL 352

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             AR +F  +   D+V+W A+I  +      +E  + FS++  +G+ PN  T   +L AC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLVSW 329
           ++      G QVH Y+ ++G++      ++L+ MYSKC N+ ++ +VF  +  + D+VSW
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSW 472

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            +L+    Q     + L   +L+  S  +PDH+    VL +       + G Q  H    
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQ-IHCFIM 531

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           K GL         ++++  + G    A  +   +   PD   W+SL+ G
Sbjct: 532 KSGLNLDISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLIVG 579



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 171/325 (52%), Gaps = 3/325 (0%)

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F   P   ++     I    + N   EAL  + + Q   +S     T + +++A S+++ 
Sbjct: 54  FSPCPLTVHYPHDDKIISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRS 113

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L  G++IH +++   +  D ++ + +  MYGKCGS+ EAR +FD M  ++VVSWT+MI  
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Y + G  +    L+ ++++SG  P+ FTF  ++ +C+     +L +Q+H ++ +  +   
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGAD 233

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLL 353
             A +AL+ MY+K   + ++  VF+ +   DL+SW S+IAG++Q G   +AL +F E+L 
Sbjct: 234 LIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLS 293

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +S  QP+  VF    +AC+     D G Q  H +  K GL         + D+ A+ G  
Sbjct: 294 QSVYQPNEFVFGSAFSACSKLLEPDCGRQ-IHGLCIKFGLGSDLFAGCSLCDMYAKCGFL 352

Query: 414 HEAEDVISKMPMKPDKFLWASLLGG 438
             A  V   +  KPD   W +++ G
Sbjct: 353 ESARTVFYHIE-KPDLVAWNAIIAG 376


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/427 (35%), Positives = 242/427 (56%), Gaps = 22/427 (5%)

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
           AK G +++A+ LFD M  ++V S+N MI+ + +   +++A  LF +MP +D+ SWT +I+
Sbjct: 246 AKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIIN 305

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFT-----------LSSVLSAVSAIQCLRLGKE 180
           GY+R  +  EA  +Y  M   + +                    + S + A   +     
Sbjct: 306 GYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSM 365

Query: 181 IHGY-----------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           I GY           + R     + V W+ +   Y + G ++ A +IF  M ++++VSW 
Sbjct: 366 IAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWN 425

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           ++I  + Q     +       + K G +P+  TFA  L+ACA+ AA ++G Q+H Y+ + 
Sbjct: 426 SLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKS 485

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           GY    F  +AL+ MY+KCG V+++++VF  +   DL+SW SLI+GYA NG  +KA + F
Sbjct: 486 GYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAF 545

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           E +      PD + F+G+L+AC+HAGL ++GL  F  + E   +   A+HY+C+VDLL R
Sbjct: 546 EQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGR 605

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
            GR  EA + +  M +K +  LW SLLG CR+H NL+L + AAE LFE+EP N + Y+T+
Sbjct: 606 VGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITL 665

Query: 470 ANIYASA 476
           +N++A A
Sbjct: 666 SNMHAEA 672



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 227/508 (44%), Gaps = 68/508 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPG 60
           I +L    R+++A Q+  Q+S  +   ++++I     N  +EE  ++   + +   F   
Sbjct: 55  ISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWA 114

Query: 61  VFIS---------------------------NCLLDMYAKCGNISDAQTLFDEMQERDVC 93
           + I+                           N ++  YAK G  +DA+ +F++M  +D+ 
Sbjct: 115 LMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLV 174

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
           SYN+M++G+T+ G +  A   F+ M +R+  SW  M++GYV+      A  L+  + N  
Sbjct: 175 SYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPN-- 232

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV-WSALSDMYGKCGSINE 212
               N  +  ++L  ++     + GK      +     S  VV W+A+   Y +   ++E
Sbjct: 233 ---PNAVSWVTMLCGLA-----KYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDE 284

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL-NACA 271
           A ++F KM  +D VSWT +I  Y + G+ +E   +++++    I       +G++ N   
Sbjct: 285 AVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRI 344

Query: 272 DHAAEELGK-----------QVHGYMTRIGYD-----------PYSFAASALVHMYSKCG 309
           D A +   +            + GY      D             S + + ++  Y++ G
Sbjct: 345 DEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAG 404

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            ++ + ++F  M   ++VSW SLIAG+ QN +   AL+   ++ K G +PD   F   L+
Sbjct: 405 QMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLS 464

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKP 427
           AC +   +  G Q  H    K G  Y  D +    ++ + A+ GR   AE V   +    
Sbjct: 465 ACANLAALQVGNQ-LHEYILKSG--YMNDLFVGNALIAMYAKCGRVQSAEQVFRDIEC-V 520

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           D   W SL+ G  ++G  + A +A E +
Sbjct: 521 DLISWNSLISGYALNGYANKAFKAFEQM 548



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 207/468 (44%), Gaps = 97/468 (20%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           +++EA++I   ++H +   Y+S+I                                    
Sbjct: 32  KVEEAIRIFFNMTHKNLVTYNSMI-----------------------------------S 56

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           + AK   I DA+ LFD+M  R++ S+NTMI+G+     +E+A  LFD MP+RDNFSW  M
Sbjct: 57  VLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALM 116

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+ Y R  +  +A +L  +       V +K                              
Sbjct: 117 ITCYTRKGKLEKARELLEL-------VPDKL----------------------------- 140

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
              D   W+A+   Y K G  N+A+++F++M  +D+VS+ +M+  Y Q G+       F 
Sbjct: 141 ---DTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFE 197

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            + +  +       AG + +    +A +L +++         +P + +   ++   +K G
Sbjct: 198 SMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIP--------NPNAVSWVTMLCGLAKYG 249

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
            +  ++++F+ MP  ++VSW ++IA Y Q+   D+A++ F    K     D + +  ++ 
Sbjct: 250 KMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLF----KKMPHKDSVSWTTIIN 305

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
                G +D+  Q ++ +  K     TA     ++  L ++GR  EA+ + S++    D 
Sbjct: 306 GYIRVGKLDEARQVYNQMPCKDITAQTA-----LMSGLIQNGRIDEADQMFSRIGAH-DV 359

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
             W S++ G    G +D     A  LF   P +N  ++ TM + YA A
Sbjct: 360 VCWNSMIAGYSRSGRMD----EALNLFRQMPIKNSVSWNTMISGYAQA 403



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 5/147 (3%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK  + +  +   P  S ++  +  C    AL+ G ++H ++  SG+   +F+ N L+ M
Sbjct: 441 LKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAM 500

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSW 126
           YAKCG +  A+ +F +++  D+ S+N++ISG+   G   +A   F++M       D  ++
Sbjct: 501 YAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTF 560

Query: 127 TAMISGYVRYNQPIEALDLYR-MMQNF 152
             M+S         + LD+++ M+++F
Sbjct: 561 IGMLSACSHAGLANQGLDIFKCMIEDF 587



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K G VE + ++F  M   +LV++ S+I+  A+N     A + F+ +        + +  G
Sbjct: 29  KLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAG 88

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            L    H  +V++  + F  + E+   +     +A ++    R G+  +A +++  +P K
Sbjct: 89  YL----HNNMVEEASELFDVMPERDNFS-----WALMITCYTRKGKLEKARELLELVPDK 139

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
            D   W +++ G    G  + AK+  E +
Sbjct: 140 LDTACWNAMIAGYAKKGQFNDAKKVFEQM 168


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/479 (33%), Positives = 270/479 (56%), Gaps = 11/479 (2%)

Query: 6   CNQRRLKEALQILHQISHP-SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           CNQ     AL I    +H  +   ++++I     N   EEG + +  +++ G  P  F  
Sbjct: 85  CNQMNF--ALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTF 142

Query: 65  NCLLDMYAKCGNISDAQ-TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            C +        I      LF    E DV   + +++ + K G +E A+  F+E+P RD 
Sbjct: 143 PCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDV 202

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
             W AM++GY +  Q    L+ +R M N E+ V ++FT++ VLS  + +  L  G+ IHG
Sbjct: 203 VLWNAMVNGYAQIGQFEMVLETFRRM-NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHG 261

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           + M+ G+DS   V ++L DMYGKC  I +A +IF+ M ++D+ SW +++  + Q G  + 
Sbjct: 262 FAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDG 321

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYS----FA 297
              L   ++ +GI+P+  T   VL AC+  AA   G+++HGYM  + +G D         
Sbjct: 322 TLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLL 381

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +A++ MY+KCG++ ++  VF  M   D+ SW  +I GY  +G  ++ALE F  + +   
Sbjct: 382 KNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQL 441

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD + FVGVL+AC+HAG V +G  +   +K K+ +  T +HY C++D+L R+G+  EA 
Sbjct: 442 KPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAY 501

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++   MP++ +  +W +LL  CR+H +  LA+ AA+ +FE+EPE+  +YV M+N+Y + 
Sbjct: 502 ELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAV 560



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 153/318 (48%), Gaps = 13/318 (4%)

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           +Q+F+    N  T  + L A +  + L  GKEIH Y++  GF +  +  ++L +MY KC 
Sbjct: 28  IQSFQQPY-NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCN 86

Query: 209 SINEARQIF-DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
            +N A  IF D   + +V ++ A+I  +   G  EEGF  + ++   G+ P+ FTF   +
Sbjct: 87  QMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAI 146

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC D    E+ K++HG + + G +   F  SALV+ Y K G +E+++  F  +P  D+V
Sbjct: 147 KACLD--VLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVV 203

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            W +++ GYAQ G  +  LE F  +      P      GVL+     G ++ G +  H  
Sbjct: 204 LWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG-RIIHGF 262

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG---GCRIH-G 443
             K G          ++D+  +     +A ++   M  K D F W S++     C  H G
Sbjct: 263 AMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHDG 321

Query: 444 NLDLAKRAAEALFEIEPE 461
            L L  R   A   I+P+
Sbjct: 322 TLRLLDRMLGA--GIQPD 337


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/473 (33%), Positives = 252/473 (53%), Gaps = 38/473 (8%)

Query: 10  RLKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R +EAL + + +      P  +   S +  C   + LE G KVH  ++ +  +  + + N
Sbjct: 265 RPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRN 324

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMY++CG                                +++A  +F E  ++D  +
Sbjct: 325 ALVDMYSRCG-------------------------------GMDEASLVFAETKEKDVIT 353

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WT+MI+GY+       AL L   MQ  +  V N  TL+S+LSA +++ CL+ GK +H ++
Sbjct: 354 WTSMINGYIMNGNAKSALALCPAMQ-LDGVVPNAVTLASLLSACASLCCLKQGKSLHAWV 412

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           MR   DSD +V +AL DMY KC +++ + Q+F K   +  V W A++          E  
Sbjct: 413 MRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAV 472

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF  ++   +  N  TF  V+ A A  A  +    +H Y+ R G+       + L+ MY
Sbjct: 473 GLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMY 532

Query: 306 SKCGNVENSKKVFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           SKCG+++ + K+F+ +P    D++ W+ LIAGY  +G  + A+  F  ++ SG QP+ I 
Sbjct: 533 SKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEIT 592

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F  VL AC+H GLVD GL  F  + E +  +   +HY C+VDLL R+GR  EA D+I  M
Sbjct: 593 FTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSM 652

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P + +  +W +LLG C IH N++L + AAE LFE+EPE+   Y+ +ANIYA+ 
Sbjct: 653 PFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAV 705



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 199/423 (47%), Gaps = 36/423 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +I+ C     L  G  +H     SGF   +F+ N LL MY  CG +  A+ +
Sbjct: 182 PDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQV 241

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M +R V S+NTMISG+ + G  E+A  +F+           +M+   V   +P  A 
Sbjct: 242 FNVMLKRSVVSWNTMISGWFQNGRPEEALAVFN-----------SMMDARV---EPDSA- 286

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                            T+ S L +   ++ L LG ++H  + +        V +AL DM
Sbjct: 287 -----------------TIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDM 329

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG ++EA  +F +  ++DV++WT+MI  Y   G  +   AL   +   G+ PNA T 
Sbjct: 330 YSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTL 389

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A +L+ACA     + GK +H ++ R   D      +AL+ MY+KC  V  S +VF     
Sbjct: 390 ASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSM 449

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD-KGLQ 382
              V W +L++G   N +  +A+  F+ +L    + +H  F  V+ A  +A L D K + 
Sbjct: 450 KRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPA--YAILADLKQVM 507

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK-PDKFLWASLLGGCRI 441
             HS   + G          ++D+ ++ G    A  +  ++P K  D  +W+ L+ G  +
Sbjct: 508 NLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGM 567

Query: 442 HGN 444
           HG+
Sbjct: 568 HGH 570



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 180/375 (48%), Gaps = 13/375 (3%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G +  AR LFD++     F W A+I  YV      +AL ++  M        +K+T   V
Sbjct: 131 GCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLV 190

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           + A S +  L +G  IHG  + +GF S+  V ++L  MY  CG +  ARQ+F+ M+ R V
Sbjct: 191 IKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSV 250

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSW  MI  +FQ GR EE  A+F+ ++ + + P++ T    L +C      ELG +VH  
Sbjct: 251 VSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKL 310

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + +          +ALV MYS+CG ++ +  VF      D+++WTS+I GY  NG    A
Sbjct: 311 VQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSA 370

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L     +   G  P+ +    +L+AC     + +G +  H+   +  L         ++D
Sbjct: 371 LALCPAMQLDGVVPNAVTLASLLSACASLCCLKQG-KSLHAWVMRKKLDSDVLVVTALID 429

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF------EIE 459
           + A+      +  V +K  MK     W +LL G  IH  L    R A  LF      E+E
Sbjct: 430 MYAKCNAVSYSFQVFAKTSMK-RTVPWNALLSGL-IHNEL---AREAVGLFKSMLIEEVE 484

Query: 460 PENPATYVTMANIYA 474
             N AT+ ++   YA
Sbjct: 485 -ANHATFNSVIPAYA 498



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 151/293 (51%), Gaps = 6/293 (2%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF-DSDEVVW--SALSDMYGKCGSINE 212
           ++N     S+L   +A + L   K +HG+ + +G   S   +   S L+  Y  CG +  
Sbjct: 76  IANVHRCDSLLCHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPL 135

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACA 271
           AR++FD + D  +  W A+I  Y  +G   +   +F  +I SG   P+ +TF  V+ AC+
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS 195

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
             +   +G  +HG     G+    F  ++L+ MY  CG V  +++VFN M +  +VSW +
Sbjct: 196 VMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNT 255

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I+G+ QNG P++AL  F  ++ +  +PD    V  L +C H   ++ G++  H + +K+
Sbjct: 256 MISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIK-VHKLVQKN 314

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            L    +    +VD+ +R G   EA  V ++   K D   W S++ G  ++GN
Sbjct: 315 HLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEK-DVITWTSMINGYIMNGN 366


>gi|242037439|ref|XP_002466114.1| hypothetical protein SORBIDRAFT_01g001585 [Sorghum bicolor]
 gi|241919968|gb|EER93112.1| hypothetical protein SORBIDRAFT_01g001585 [Sorghum bicolor]
          Length = 627

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 251/429 (58%), Gaps = 7/429 (1%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           ++VHS    +GF    +I +CL+++Y++CG++  A+ +   M  + V +   +I  +++ 
Sbjct: 131 EQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEV---MGSQSVYASTALIDFYSRH 187

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G  + A  +F+ +  ++  SW +M+   +R  +  +AL ++  M + E    N+F  S  
Sbjct: 188 GDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMIS-EAVEPNEFAFSIA 246

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L A   + CL  G++IH  +++    +D  V +AL  MYG+ G ++E   +  K+ + D+
Sbjct: 247 LGACGFV-CL--GRQIHCSVIKCNLMTDIRVSNALLSMYGRSGFVSEIDAVLGKIENPDL 303

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSWTA I   FQ G  E+  AL  ++   G  PN + F+  L++CAD A  + G+Q+H  
Sbjct: 304 VSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCL 363

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
             ++G D      +AL++MYSKCG + +++  F+ M   D++SW SLI G AQ+G  +  
Sbjct: 364 ALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLV 423

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           LE F  +  SG QPD   F+ VL  C HAGLV +G  +F  + +++GLT T  HYAC++D
Sbjct: 424 LEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMID 483

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
           +L R+GRF EA  +I  MP +PD  +W +LL  C++H NLD+ K A + L E+   + A+
Sbjct: 484 MLGRNGRFDEALHMIENMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSAS 543

Query: 466 YVTMANIYA 474
           YV M+N+YA
Sbjct: 544 YVLMSNLYA 552



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 172/383 (44%), Gaps = 36/383 (9%)

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           + G  K G L  A +LFD MP+++  +WT  IS   R N  +EA              +N
Sbjct: 50  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISECTR-NGWLEATAAMFADMLESGVAAN 108

Query: 159 KFTLSSVLSAVSAIQCLRL--GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ- 215
            F  ++ L+A +A     L   +++H   +R GF +D  + S L ++Y +CGS+  A + 
Sbjct: 109 DFACNAALAACAAASAHALSLDEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEV 168

Query: 216 ---------------------------IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
                                      +F+ +  ++VVSW +M+    ++GR E+   +F
Sbjct: 169 MGSQSVYASTALIDFYSRHGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVF 228

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           SE+I   + PN F F+  L AC       LG+Q+H  + +         ++AL+ MY + 
Sbjct: 229 SEMISEAVEPNEFAFSIALGACGFVC---LGRQIHCSVIKCNLMTDIRVSNALLSMYGRS 285

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G V     V   +  PDLVSWT+ I+   QNG  +KA+     +   G  P+   F   L
Sbjct: 286 GFVSEIDAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGL 345

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           ++C    L+D+G Q  H +  K G  +       ++++ ++ G+   A      M +  D
Sbjct: 346 SSCADLALLDQGRQ-LHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMNLH-D 403

Query: 429 KFLWASLLGGCRIHGNLDLAKRA 451
              W SL+ G   HG  +L   A
Sbjct: 404 VMSWNSLIHGLAQHGAANLVLEA 426



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 143/312 (45%), Gaps = 10/312 (3%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S++Q C ++  LE+  +V S + S   +P  F  +  L     CG +   + +   + 
Sbjct: 208 WCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIAL---GACGFVCLGRQIHCSVI 264

Query: 89  E----RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           +     D+   N ++S + + G + +   +  ++   D  SWTA IS   +     +A+ 
Sbjct: 265 KCNLMTDIRVSNALLSMYGRSGFVSEIDAVLGKIENPDLVSWTAAISANFQNGFSEKAVA 324

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L   M + E    N +  SS LS+ + +  L  G+++H   ++ G D      +AL +MY
Sbjct: 325 LLLQMHS-EGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMY 383

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            KCG I  AR  FD M   DV+SW ++I    Q G        FSE+  SG +P+  TF 
Sbjct: 384 SKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFI 443

Query: 265 GVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP- 322
            VL  C      + G+     MT R G  P     + ++ M  + G  + +  +   MP 
Sbjct: 444 AVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIENMPF 503

Query: 323 RPDLVSWTSLIA 334
            PD++ W +L+A
Sbjct: 504 EPDVLIWKTLLA 515



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 113/258 (43%), Gaps = 20/258 (7%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           LQ+  +   P+   +SS +  C     L++G+++H      G    V   N L++MY+KC
Sbjct: 327 LQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKC 386

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMI 130
           G I  A+  FD M   DV S+N++I G  + G+       F EM     Q D+ ++ A++
Sbjct: 387 GQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVL 446

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL-----RLGKEIHGYI 185
            G        E    +R+M       ++++ L+   S  + +  +     R  + +H  I
Sbjct: 447 VGCNHAGLVKEGETFFRLM-------TDRYGLTPTPSHYACMIDMLGRNGRFDEALH-MI 498

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV---DRDVVSWTAMIGRYFQEGRRE 242
               F+ D ++W  L        +++  +   DK++   +RD  S+  M   Y      +
Sbjct: 499 ENMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASYVLMSNLYAMHEEWQ 558

Query: 243 EGFALFSELIKSGIRPNA 260
           +   +   + + G++ +A
Sbjct: 559 DAERVRRRMDEIGVKKDA 576


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/419 (36%), Positives = 223/419 (53%), Gaps = 49/419 (11%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G +  AR LFD +P+   FSW  M  GY R   P   + LY  M    N   + +T   +
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLE-RNVKPDCYTYPFL 120

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD------- 218
               +    L+LG+E+H ++++ G DS+    +AL +MY  CG I+ AR IFD       
Sbjct: 121 FKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDV 180

Query: 219 -----------------------------------------KMVDRDVVSWTAMIGRYFQ 237
                                                    KM +RD VSWTAMI  Y +
Sbjct: 181 VTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLR 240

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               +E   LF E+  S I+P+ FT   VL ACA   A ELG+ +  Y+ +      +F 
Sbjct: 241 LNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFV 300

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +AL+ MY KCGNVE +  +FN +P+ D  +WT+++ G A NG  ++AL  F  +LK+  
Sbjct: 301 GNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASV 360

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD + +VGVL+ACTH G+VD+G ++F S+  +HG+     HY C+VDLL ++G   EA 
Sbjct: 361 TPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAH 420

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++I  MPMKP+  +W +LLG CRIH + ++A+RA E + E+EP N A YV   NIYA+ 
Sbjct: 421 EIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAAC 479



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 203/390 (52%), Gaps = 24/390 (6%)

Query: 4   ILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           I C +  +   L++L +   P    Y  L +   ++ AL+ G+++H H+   G    VF 
Sbjct: 92  IACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFA 151

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS-----------------GFTKGG 106
            N L++MY+ CG I  A+ +FD   + DV ++N MIS                 GF   G
Sbjct: 152 HNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTG 211

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
            ++ AR  F +MP+RD+ SWTAMI GY+R N   EAL L+R MQ  +    ++FT+ SVL
Sbjct: 212 QVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIK-PDEFTMVSVL 270

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
           +A + +  L LG+ I  YI +    +D  V +AL DMY KCG++  A  IF+ +  RD  
Sbjct: 271 TACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKF 330

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           +WTAM+      G  EE   +FS+++K+ + P+  T+ GVL+AC      + GK+    M
Sbjct: 331 TWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASM 390

Query: 287 T-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG---YAQNGM 341
           T R G +P       +V +  K G+++ + ++   MP +P+ + W +L+     +    M
Sbjct: 391 TARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEM 450

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
            ++A+E   L L+      +++   +  AC
Sbjct: 451 AERAIEQI-LELEPNNGAVYVLQCNIYAAC 479


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 248/446 (55%), Gaps = 33/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +S I+ C Q+  L+ GK VH +L  SGF+      N L+DMYAKC               
Sbjct: 326 TSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC--------------- 370

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                           G L  A+ +FD    +D+ +W ++I+GY +     E L+ ++MM
Sbjct: 371 ----------------GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMM 414

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +      S  F L  +LS  S +  +  G+ IH  +++ GF+++ ++ ++L D+Y KCG 
Sbjct: 415 KMERKPDSVTFVL--LLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGE 472

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +++  ++F  M   D++SW  +I           GF + +E+   G+ P+  T  G+L  
Sbjct: 473 MDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+  A    GK++HGY+ + G++      +AL+ MYSKCG++EN  KVF  M   D+V+W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T+LI+ +   G   KAL+ F+ +  SG  PD + F+  + AC+H+G+V +GL++F  +K 
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            + L    +HYAC+VDLLARSG   +AE+ I  MPMKPD  LW +LL  CR  GN ++A+
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
           R ++ + E+  ++   YV ++NIYA+
Sbjct: 713 RVSKKILELNSDDTGYYVLVSNIYAT 738



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 199/401 (49%), Gaps = 35/401 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    + S+I  C +   LE G  VH H    GF+  ++I N L+DMY++  ++ +A+ 
Sbjct: 118 QPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARY 177

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+EM  RD  S+N++ISG+   G  E A +++ +      F  T M             
Sbjct: 178 VFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK------FRMTGM------------- 218

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                        V + FT+SSVL A  ++  ++ G  +HG I + G   D ++ + L  
Sbjct: 219 -------------VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLS 265

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY K   + EAR++F KM  +D V+W  MI  Y Q GR E    LF ++I  G  P+  +
Sbjct: 266 MYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLS 324

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
               + AC      ++GK VH Y+   G++  + A + L+ MY+KCG++  +++VF+   
Sbjct: 325 ITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTK 384

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D V+W SLI GY Q+G   + LE F+ ++K   +PD + FV +L+  +    +++G +
Sbjct: 385 CKDSVTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQG-R 442

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
             H    K G          ++D+ A+ G   +   V S M
Sbjct: 443 GIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 211/457 (46%), Gaps = 43/457 (9%)

Query: 24  PSPS---IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           P PS   + SSL++     +   + + VHS + +SG    V  S  L+  YA+  +   +
Sbjct: 14  PEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISS 73

Query: 81  QTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
            ++F  +    +V  +N++I   T  G   QA   + EM ++                QP
Sbjct: 74  VSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKL--------------QP 119

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                             + FT  SV+++ + I  L LG  +H + M  GF+SD  + +A
Sbjct: 120 ------------------DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNA 161

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY +   ++ AR +F++M +RD VSW ++I  Y   G  E+   ++ +   +G+ P+
Sbjct: 162 LIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPD 221

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            FT + VL AC    A + G  VHG + +IG        + L+ MY K   +  +++VF+
Sbjct: 222 CFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFS 281

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D V+W ++I GYAQ G  + +++ F  ++  G  PD +     + AC  +G +  
Sbjct: 282 KMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQV 340

Query: 380 GLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           G ++ H  K   G  +  D  AC  ++D+ A+ G    A++V      K D   W SL+ 
Sbjct: 341 G-KFVH--KYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLIN 396

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           G    G       + + +      +  T+V + +I++
Sbjct: 397 GYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFS 433



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 224/481 (46%), Gaps = 14/481 (2%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+      L  A  +  ++S+     ++SLI     N   E+   ++   + +G  P  
Sbjct: 163 IDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDC 222

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F  + +L        + +   +   +++     DV   N ++S + K   L +AR +F +
Sbjct: 223 FTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSK 282

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  +D+ +W  MI GY +  +   ++ L+  M   +  V +  +++S + A      L++
Sbjct: 283 MAVKDSVTWNTMICGYAQLGRHEASVKLF--MDMIDGFVPDMLSITSTIRACGQSGDLQV 340

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK +H Y++ +GF+ D V  + L DMY KCG +  A+++FD    +D V+W ++I  Y Q
Sbjct: 341 GKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQ 400

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  +EG   F +++K   +P++ TF  +L+  +  A    G+ +H  + + G++     
Sbjct: 401 SGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELII 459

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++L+ +Y+KCG +++  KVF+ M   D++SW ++IA            +    +   G 
Sbjct: 460 GNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGL 519

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD    +G+L  C+   +  +G +  H    K G          ++++ ++ G      
Sbjct: 520 MPDEATVLGILPMCSLLAVRRQG-KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCI 578

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYAS 475
            V   M  K D   W +L+    ++G     K+A +A  ++E     P +   +A I+A 
Sbjct: 579 KVFKYMKEK-DVVTWTALISAFGMYGE---GKKALKAFQDMELSGVLPDSVAFIAFIFAC 634

Query: 476 A 476
           +
Sbjct: 635 S 635


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 266/455 (58%), Gaps = 15/455 (3%)

Query: 24  PSPSIYSSLIQFCRQNR--ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           P+P+  S +   C   R   + E +++   +        V   N ++  Y +  ++ +A 
Sbjct: 229 PNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRN----VVAWNAMIAAYVQNCHVDEAI 284

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
           +LF EM E++  S+ T+I+G+ + G L++AR L ++MP R+  + TAMISGYV+  +  +
Sbjct: 285 SLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDD 344

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A  ++  +     S+ +    +++++  S  QC R+ + +H  + +     D V W+ + 
Sbjct: 345 ARQIFNQI-----SIRDVVCWNTMIAGYS--QCGRMDEALH--LFKQMVKKDIVSWNTMV 395

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
             Y + G ++ A +IF++M ++++VSW ++I    Q G   +    F  +   G +P+  
Sbjct: 396 ASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQS 455

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TFA  L++CA  AA ++GKQ+H  + + GY    F ++AL+ MY+KCG++ +++ +F  +
Sbjct: 456 TFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDI 515

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+VSW SLIA YA NG   +AL+ F  +   G  PD + FVG+L+AC+H GL+D+GL
Sbjct: 516 DHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 575

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           + F  + + + +   A+HYAC+VDLL R+GR  EA  ++  M +  +  +W +LLG CRI
Sbjct: 576 KLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRI 635

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGNL+LAK AAE L E EP   + YV ++N+ A A
Sbjct: 636 HGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEA 670



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 176/313 (56%), Gaps = 6/313 (1%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           +L EA Q+L+Q+ + + +  +++I    QN+ +++ +++ + +        V   N ++ 
Sbjct: 310 KLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIR----DVVCWNTMIA 365

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y++CG + +A  LF +M ++D+ S+NTM++ + + G ++ A  +F+EM +++  SW ++
Sbjct: 366 GYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSL 425

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           ISG  +    ++AL  + M+   E    ++ T +  LS+ + +  L++GK++H  +M++G
Sbjct: 426 ISGLTQNGSYLDALKSF-MLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSG 484

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           + +D  V +AL  MY KCGSI+ A  +F  +   DVVSW ++I  Y   G   E   LF 
Sbjct: 485 YATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFH 544

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKC 308
           ++   G+ P+  TF G+L+AC+     + G ++   M +    +P +   + +V +  + 
Sbjct: 545 KMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRA 604

Query: 309 GNVENSKKVFNGM 321
           G +E + ++  GM
Sbjct: 605 GRLEEAFQLVRGM 617



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 218/468 (46%), Gaps = 82/468 (17%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           ++E  KV  H+            N ++  +AK G ISDA+ LFD M +R++ S+N+MI+ 
Sbjct: 31  IDEAIKVFQHMTHKN----TVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAA 86

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV----- 156
           +     +E+AR LFD+MP RD +SWT MI+ Y R  +  +A +L+ ++    N V     
Sbjct: 87  YLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAM 146

Query: 157 ----------------------SNKFTLSSVLSAVSAIQCLRLGKE----------IHGY 184
                                  +  + +S+L+  +    +RLG +          +   
Sbjct: 147 VAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWN 206

Query: 185 IMRTGF-----------------DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           +M  GF                 + + V W  +   + + G I EAR++FD+M  R+VV+
Sbjct: 207 LMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVA 266

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W AMI  Y Q    +E  +LF E+ +     N+ ++  V+N        +  +Q+   M 
Sbjct: 267 WNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQM- 321

Query: 288 RIGYDPYSFAA--SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
                PY   A  +A++  Y +   +++++++FN +   D+V W ++IAGY+Q G  D+A
Sbjct: 322 -----PYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEA 376

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L  F+ ++K     D + +  ++ +    G +D  ++ F  +KEK+ +++ +     ++ 
Sbjct: 377 LHLFKQMVKK----DIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNS-----LIS 427

Query: 406 LLARSGRFHEAEDVISKM---PMKPDKFLWASLLGGCRIHGNLDLAKR 450
            L ++G + +A      M     KPD+  +A  L  C     L + K+
Sbjct: 428 GLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQ 475



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 194/431 (45%), Gaps = 36/431 (8%)

Query: 48  VHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG 106
           + S LKS G     VF  N  +    K G I +A  +F  M  ++  ++N+MIS F K G
Sbjct: 1   MKSSLKSVGEHGSYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNG 60

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
            +  AR LFD MPQR+  SW +MI+ Y+  ++  EA  L+           +K     + 
Sbjct: 61  RISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLF-----------DKMPTRDLY 109

Query: 167 SAVSAIQCLRLGKEI---HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           S    I C     E+           +  + V  +A+   Y K    +EAR++FD M  +
Sbjct: 110 SWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK 169

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           D+VSW +M+  Y + G    G   F E+ +  +        G +     +++ E  +++ 
Sbjct: 170 DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP 229

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
                   +P + +   ++  +++ G +  ++++F+ MP  ++V+W ++IA Y QN   D
Sbjct: 230 --------NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVD 281

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +A+  F  +     + + I +  V+      G +D+  Q  + +  ++    TA     +
Sbjct: 282 EAISLFMEM----PEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTA-----M 332

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +    ++ R  +A  + +++ ++ D   W +++ G    G +D    A     ++  ++ 
Sbjct: 333 ISGYVQNKRMDDARQIFNQISIR-DVVCWNTMIAGYSQCGRMD---EALHLFKQMVKKDI 388

Query: 464 ATYVTMANIYA 474
            ++ TM   YA
Sbjct: 389 VSWNTMVASYA 399


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/504 (32%), Positives = 268/504 (53%), Gaps = 67/504 (13%)

Query: 11  LKEALQILHQ--ISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           L   L+IL Q  + H P PS Y+ + QF  ++  ++ G++ H+ +   G +P  F++  +
Sbjct: 59  LNLQLRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKM 118

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYA  G++  A  +FD +       YN++I  +T+ G                     
Sbjct: 119 VAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXX---------------X 163

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
             +  Y R               +F   + + FTL  VL + + +  + +G+ +HG  +R
Sbjct: 164 XXLEAYAR--------------MHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR 209

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD----------------------- 224
            G + D  V ++L DMY KCG I +AR++FDKM+ RD                       
Sbjct: 210 VGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDL 269

Query: 225 --------VVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHA 274
                   +VSWTAMI  Y Q G  E+   LF E+++ G  ++PN  T   VL ACA  A
Sbjct: 270 FERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSA 329

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSL 332
           A E G+++H +   IG    S   +AL  MY+KC ++  ++  F+ + +   +L++W ++
Sbjct: 330 ALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTM 389

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I  YA +G   +A+  FE +L++G QPD + F+G+L+ C+H+GL+D GL +F+ +   H 
Sbjct: 390 ITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHS 449

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +    +HYAC+VDLL R+GR  EA+++IS+MPM+    +W +LL  CR H NL++A+ AA
Sbjct: 450 VEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAA 509

Query: 453 EALFEIEPENPATYVTMANIYASA 476
             LF +EP+N   YV ++N+YA A
Sbjct: 510 RRLFVLEPDNSGNYVLLSNLYAEA 533


>gi|308081250|ref|NP_001182909.1| uncharacterized protein LOC100501193 [Zea mays]
 gi|238008118|gb|ACR35094.1| unknown [Zea mays]
          Length = 402

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 229/375 (61%), Gaps = 1/375 (0%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           ++K G L +A  +FD+MPQ+D  +WT MI GY +      A+ ++R M+      +++  
Sbjct: 2   YSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQHV 61

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI-NEARQIFDKM 220
             S LSA   ++    G+ +H  I++ GF+ + VV +AL DMY K G + N +R +    
Sbjct: 62  FCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVSIDP 121

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
              +VVS T++I  Y + GR EE    ++EL + G+ PN FTFA ++  CA H   E G 
Sbjct: 122 GGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGA 181

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H  + +      SF  S LV+MY  CG +  S ++FN +     ++W ++I  YAQ+G
Sbjct: 182 QLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYRTEIAWNAVINVYAQHG 241

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
               A++ F+ +  SG +P+HI FV +LTAC+HAGLVD+GL YFHS+K+ HG+   A+HY
Sbjct: 242 HGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEGLGYFHSMKDAHGIEPKAEHY 301

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           +CI+D+  R+GR  EAE  IS+MP+KP  + W SLLG CR+ GN +L + AA+ L +++P
Sbjct: 302 SCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLGACRMQGNKELGEVAAQNLMKLDP 361

Query: 461 ENPATYVTMANIYAS 475
            N   +++++ IY S
Sbjct: 362 NNTGIHISLSGIYTS 376



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 141/301 (46%), Gaps = 39/301 (12%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD-EMQERDVCSYNTMISGFT 103
           G+ +H  +  +GF+    + N LLDMYAK G++ +A  +   +    +V S  ++I G+ 
Sbjct: 78  GRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYV 137

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           + G +E+A   + E+ +                 Q +E                N+FT +
Sbjct: 138 EAGRIEEALETYTELGR-----------------QGVE---------------PNEFTFA 165

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           S++   +    L  G ++H  +++T   SD  V S L  MYG CG I+ + Q+F+++  R
Sbjct: 166 SMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYR 225

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA---EELGK 280
             ++W A+I  Y Q G        F  +  SGIRPN  TF  +L AC+ HA    E LG 
Sbjct: 226 TEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACS-HAGLVDEGLG- 283

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQN 339
             H      G +P +   S ++ MY + G ++ ++K  + MP +P   +W SL+      
Sbjct: 284 YFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLGACRMQ 343

Query: 340 G 340
           G
Sbjct: 344 G 344



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 2/182 (1%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAF 261
           MY KCG ++EA ++FD+M  +D V+WT MI  Y + G  E    +F ++   G +  +  
Sbjct: 1   MYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQH 60

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
            F   L+A         G+ +H  + + G++  +   +AL+ MY+K G++EN+ +V +  
Sbjct: 61  VFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVSID 120

Query: 322 PRP-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           P   ++VS TSLI GY + G  ++ALE +  L + G +P+   F  ++  C    L+++G
Sbjct: 121 PGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQG 180

Query: 381 LQ 382
            Q
Sbjct: 181 AQ 182



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 40/264 (15%)

Query: 2   IDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID      R++EAL+   ++      P+   ++S+I+ C  +  LE+G ++H+ +  +  
Sbjct: 133 IDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNL 192

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               F+ + L+ MY  CG IS +  LF+E+  R   ++N +I+ + + G    A   FD 
Sbjct: 193 ISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDR 252

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M            S  +R                      N  T   +L+A S    +  
Sbjct: 253 MT-----------SSGIR---------------------PNHITFVCLLTACSHAGLVDE 280

Query: 178 G-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRY 235
           G    H      G +     +S + DMYG+ G ++EA +   +M V     +W +++G  
Sbjct: 281 GLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLGAC 340

Query: 236 FQEGRREEGFALFSELIKSGIRPN 259
             +G +E G      L+K  + PN
Sbjct: 341 RMQGNKELGEVAAQNLMK--LDPN 362



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 42/187 (22%)

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHI 362
           MYSKCG +  + +VF+ MP+ D V+WT++I GYA+NG  + A+  F  +   G    D  
Sbjct: 1   MYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQH 60

Query: 363 VFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           VF   L+A    GL D    +  H    K G          ++D+ A+SG    A  V+S
Sbjct: 61  VFCSALSA--SGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVS 118

Query: 422 KMP-----------------------------------MKPDKFLWASLLGGCRIHGNLD 446
             P                                   ++P++F +AS++ GC +H   D
Sbjct: 119 IDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMH---D 175

Query: 447 LAKRAAE 453
           L ++ A+
Sbjct: 176 LLEQGAQ 182


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 256/452 (56%), Gaps = 33/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P +Y + I  C Q++ LE+ +KVH+HL SS F    F+ N L+ +Y KCG        
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCG-------- 100

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  S+ +AR +FDEM ++D  SWT++I+GY + + P EA+
Sbjct: 101 -----------------------SVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAI 137

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L   M        N FT +S+L A  A     +G++IH   ++  +  D  V SAL DM
Sbjct: 138 GLLPGMLKGRFK-PNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDM 196

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG ++ A  +FDK+  ++ VSW A+I  + ++G  E     F+E++++G     FT+
Sbjct: 197 YARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTY 256

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + V ++ A   A E GK VH +M +      +FA + L+ MY+K G++ +++KVF+ +  
Sbjct: 257 SSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDD 316

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLV+W +++  +AQ G+  +A+ +FE + KSG   + + F+ +LTAC+H GLV +G +Y
Sbjct: 317 KDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRY 376

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +KE + L    DH+  +V LL R+G  + A   I KMP++P   +W +LL  CR+H 
Sbjct: 377 FEMMKE-YDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHK 435

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N  + + AA+ +FE++P++    V + NIYAS
Sbjct: 436 NAKVGQFAADHVFELDPDDSGPPVLLYNIYAS 467



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 68/370 (18%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEE----------------- 44
           I + C    + EA ++  ++       ++SLI    QN   EE                 
Sbjct: 93  IHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNG 152

Query: 45  ------------------GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
                             G+++H+      +   V++ + LLDMYA+CG +  A  +FD+
Sbjct: 153 FTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDK 212

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           +  ++  S+N +ISGF + G  E A   F EM                            
Sbjct: 213 LDSKNGVSWNALISGFARKGDGETALMTFAEM---------------------------- 244

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
            +   FE   +  FT SSV S+++ +  L  GK +H +++++         + L DMY K
Sbjct: 245 -LRNGFE---ATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAK 300

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            GS+ +AR++FD++ D+D+V+W  M+  + Q G  +E  + F E+ KSGI  N  TF  +
Sbjct: 301 SGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCI 360

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPD 325
           L AC+     + GK+    M     +P       +V +  + G +  +      MP  P 
Sbjct: 361 LTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPT 420

Query: 326 LVSWTSLIAG 335
              W +L+A 
Sbjct: 421 AAVWGALLAA 430



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 19/234 (8%)

Query: 250 ELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           +L+ +G + P    +   + ACA     E  ++VH ++    +   +F  ++L+H+Y KC
Sbjct: 40  DLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKC 99

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+V  ++KVF+ M R D+VSWTSLIAGYAQN MP++A+     +LK   +P+   F  +L
Sbjct: 100 GSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLL 159

Query: 369 TAC-THAGLVDKGLQYFHSIKEKHGLTYTADHY------ACIVDLLARSGRFHEAEDVIS 421
            A   HA   D G+      ++ H L    D +      + ++D+ AR G    A  V  
Sbjct: 160 KAAGAHA---DSGIG-----RQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFD 211

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           K+  K +   W +L+ G    G+ + A      +     E  AT+ T +++++S
Sbjct: 212 KLDSK-NGVSWNALISGFARKGDGETALMTFAEMLRNGFE--ATHFTYSSVFSS 262


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 280/511 (54%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +  L    R++EAL ++  +         + Y+S +  C +  +L  GK++H+ +  +  
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               ++++ L+++YAK                                G  ++A+ +F+ 
Sbjct: 302 HIDPYVASALVELYAK-------------------------------SGCFKEAKGVFNS 330

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R+N +WT +ISG+++Y    E+++L+  M+  E    ++F L++++S   +   L L
Sbjct: 331 LHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDLCL 389

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKC------------------------------ 207
           G+++H   +++G     VV ++L  MY KC                              
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 449

Query: 208 -GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAG 265
            G++ +AR+ FD M +++V++W AM+G Y Q G  E+G  ++  ++    +RP+  T+  
Sbjct: 450 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 509

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G   ++G    +  A+A++ MYSKCG +  ++KVF+ +   D
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++I GY+Q+GM  +A+E F+ +LK G +PD+I +V VL+ C+H+GLV +G  YF 
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 629

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +K  H ++   +H++C+VDLL R+G   EA+D+I  MPMKP   +W +LL  C+IHGN 
Sbjct: 630 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNN 689

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ AA+ +FE++  +  +Y+ MA IYA A
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLMAKIYADA 720



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/479 (27%), Positives = 217/479 (45%), Gaps = 41/479 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ-TLFDEM 87
           ++  ++ C    AL   + +H  L + G    VF+ N LL  Y  CG +SDA+  L  ++
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
              +V ++N M++G+ K G L  A  LF  MP RD  SW  ++SGY +  Q + +L+ + 
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M    +S  N FTL+  + +  A+    L  ++   + +     D  V +AL DM+ +C
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 186

Query: 208 GS-------------------------------INEARQIFDKMVDRDVVSWTAMIGRYF 236
           G+                               ++ A ++FD M +RDVVSW  M+    
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR--IGYDPY 294
           Q GR  E   +  ++   G+R ++ T+   L ACA  ++   GKQ+H  + R     DPY
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 306

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
              ASALV +Y+K G  + +K VFN +   + V+WT LI+G+ Q G   +++E F  +  
Sbjct: 307 --VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA 364

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
                D      +++ C     +  G Q  HS+  K G          ++ + A+     
Sbjct: 365 ELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQ 423

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            AE +   M  K D   W S++      GN+  A+   + + E   +N  T+  M   Y
Sbjct: 424 SAEAIFRFMNEK-DIVSWTSMITAYSQVGNVAKAREFFDGMSE---KNVITWNAMLGAY 478


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 264/476 (55%), Gaps = 38/476 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ++ LC+ R +     +   +  P+  ++ S    C +    + G+++H      G    +
Sbjct: 282 LEALCHFREM-----LSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F    L DMYAKCG                                LE AR +F  + + 
Sbjct: 337 FAGCSLCDMYAKCG-------------------------------FLESARTVFYHIEKP 365

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  +W A+I+G+   +   E+   +  M++    V N  T+ S+L A S    L  G ++
Sbjct: 366 DLVAWNAIIAGFASVSNAKESSSFFSQMRH-TGLVPNDVTVLSLLCACSEPVMLNHGIQV 424

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGR 240
           H YI++ GF+ D  V ++L  MY KC ++N+A Q+F+ + ++ D+VSW  ++    Q+ +
Sbjct: 425 HSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E   L   +  S I+P+  T   VL +    A+ E+G Q+H ++ + G +     ++A
Sbjct: 485 AGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA 544

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L++MY+KCG++E ++K+F+ +  PD++SW+SLI GYAQ G   +A E F  +   G +P+
Sbjct: 545 LINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPN 604

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I FVG+LTAC+H G+V++GL+ + +++E + ++ T +H +C+VDLLAR+G    AED I
Sbjct: 605 EITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFI 664

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +MP  PD  +W +LL  C++HGNL++ KRAAE + +I+P N A  V + NI+AS+
Sbjct: 665 RQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASS 720



 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 239/480 (49%), Gaps = 45/480 (9%)

Query: 5   LCNQRRLKEALQILHQI----SHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           LC +   +EAL+         S P  S+ Y+ LI  C   R+LE G+K+H H+ +  ++P
Sbjct: 72  LCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQP 131

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            + + N +L MY KCG                               SL++ARN+FD MP
Sbjct: 132 DMILQNHILSMYGKCG-------------------------------SLKEARNMFDSMP 160

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
            ++  SWT+MISGY RY +   A+ LY  M      + + FT  S++ + S +   +L +
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLR-SGHIPDHFTFGSIVKSCSGLDDFKLAR 219

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           ++H +++++ F +D +  +AL  MY K   + +A  +F +++ +D++SW +MI  + Q G
Sbjct: 220 QLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLG 279

Query: 240 RREEGFALFSELIKSGI-RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              E    F E++   + +PN F F    +AC+     + G+Q+HG   + G     FA 
Sbjct: 280 YELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAG 339

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            +L  MY+KCG +E+++ VF  + +PDLV+W ++IAG+A      ++  +F  +  +G  
Sbjct: 340 CSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLV 399

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+ +  + +L AC+   +++ G+Q  HS   K G          ++ + ++    ++A  
Sbjct: 400 PNDVTVLSLLCACSEPVMLNHGIQ-VHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQ 458

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF--EIEPENPATYVTMANIYASA 476
           V   +  K D   W +LL  C          R  + +F   I+P+    +VT+ N+  S+
Sbjct: 459 VFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPD----HVTLTNVLVSS 514



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 3/349 (0%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+ + N +IS +TK   +  A N+F  +  +D  SW +MI+G+ +    +EAL  +R M 
Sbjct: 233 DLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREML 292

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +      N+F   S  SA S +     G++IHG  ++ G  SD     +L DMY KCG +
Sbjct: 293 SQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFL 352

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             AR +F  +   D+V+W A+I  +      +E  + FS++  +G+ PN  T   +L AC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLVSW 329
           ++      G QVH Y+ ++G++      ++L+ MYSKC N+ ++ +VF  +  + D+VSW
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSW 472

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            +L+    Q     + L   +L+  S  +PDH+    VL +       + G Q  H    
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQ-IHCFIM 531

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           K GL         ++++  + G    A  +   +   PD   W+SL+ G
Sbjct: 532 KSGLNLDISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLIVG 579



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 171/325 (52%), Gaps = 3/325 (0%)

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           F   P   ++     I    + N   EAL  + + Q   +S     T + +++A S+++ 
Sbjct: 54  FSPCPLTVHYPHDDKIISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRS 113

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L  G++IH +++   +  D ++ + +  MYGKCGS+ EAR +FD M  ++VVSWT+MI  
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Y + G  +    L+ ++++SG  P+ FTF  ++ +C+     +L +Q+H ++ +  +   
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGAD 233

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLL 353
             A +AL+ MY+K   + ++  VF+ +   DL+SW S+IAG++Q G   +AL +F E+L 
Sbjct: 234 LIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLS 293

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +S  QP+  VF    +AC+     D G Q  H +  K GL         + D+ A+ G  
Sbjct: 294 QSVYQPNEFVFGSAFSACSKLLEPDCGRQ-IHGLCIKFGLGSDLFAGCSLCDMYAKCGFL 352

Query: 414 HEAEDVISKMPMKPDKFLWASLLGG 438
             A  V   +  KPD   W +++ G
Sbjct: 353 ESARTVFYHIE-KPDLVAWNAIIAG 376


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/514 (33%), Positives = 271/514 (52%), Gaps = 42/514 (8%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I    N   LK AL +  +I  P    ++ LI    Q+   ++   ++S L S   +P  
Sbjct: 18  IKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDK 77

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F+   +    A  G++  A+ + D+  +    +D+   N +I  F K   +  AR +FD+
Sbjct: 78  FVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDD 137

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  +D  SWT+M   YV      + + L+R M       +N  T+SS+L A +    ++L
Sbjct: 138 MVVKDVVSWTSMTYCYVNCGMCRQGILLFREM-GLNGIRANSLTVSSILPACA--DYIKL 194

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+E+HG+I+R   + +  V SAL +MY     + +AR +FD M  RD+VSW  M+  YF 
Sbjct: 195 GREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFL 254

Query: 238 EGRREEGFALFSELIK-----------------------------------SGIRPNAFT 262
               E G  LF ++ K                                   SGI+PN  T
Sbjct: 255 NKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRIT 314

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
               L  C +  +   GK++HGY+ R  +       +ALV +Y+KCG++E S+ VFN MP
Sbjct: 315 IVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMP 374

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D+V+W ++I   + +G   ++L  F  +L SG +P+ + F+GVL+ C+H+ L D+GL 
Sbjct: 375 RKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLL 434

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            F+S+  +H +T  ADHY+C+VD+L+R+GR  EA D I KMP++P    W +LLG CR++
Sbjct: 435 VFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVY 494

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++L   AA  LFEIEP+N   YV ++NI  +A
Sbjct: 495 KNVELGTLAASQLFEIEPDNAGNYVLLSNILVTA 528



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 193/386 (50%), Gaps = 40/386 (10%)

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
           C    +I      G L++A  LFD++P+ D  +WT +ISG+ ++  P +A+D+Y  + + 
Sbjct: 12  CQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLS- 70

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
            N   +KF L SV  A +A   L + K+IH   ++ GF+ D V+ +AL DM+GKC  +N 
Sbjct: 71  RNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNG 130

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           AR +FD MV +DVVSWT+M   Y   G   +G  LF E+  +GIR N+ T + +L ACAD
Sbjct: 131 ARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD 190

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
           +   +LG++VHG++ R   +   + +SALV+MY+    ++ ++ VF+ M   D+VSW  +
Sbjct: 191 YI--KLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVM 248

Query: 333 -----------------------------------IAGYAQNGMPDKALEYFELLLKSGT 357
                                              I+G  QNG  + AL     +  SG 
Sbjct: 249 LTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGI 308

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P+ I  V  L  CT+   + +G +  H    +H           +V L A+ G    + 
Sbjct: 309 KPNRITIVSALPGCTNLESL-RGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSR 367

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHG 443
            V + MP K D   W +++    +HG
Sbjct: 368 HVFNTMPRK-DVVAWNTMIMANSMHG 392


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 247/461 (53%), Gaps = 46/461 (9%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           + S   +++  C     +++G+ +HS +  SGF+  + ++N ++ MY +CG         
Sbjct: 159 TKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCG--------- 209

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEA 142
                                 ++E+AR +FD M +  RD  SW  M+S YV  ++  +A
Sbjct: 210 ----------------------AVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDA 247

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + LY+ MQ       +K T  S+LSA S+ + + LG+ +H  I+    + + +V +AL  
Sbjct: 248 IQLYQRMQ----LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVS 303

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS---ELIKSG---- 255
           MY KCGS  EAR +FDKM  R ++SWT +I  Y +     E   LF    EL K+G    
Sbjct: 304 MYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQR 363

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           ++P+A  F  +LNACAD +A E GK V       G        +A+V++Y KCG +E ++
Sbjct: 364 VKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEAR 423

Query: 316 KVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           ++F+ +  RPD+  W ++IA YAQ G   +AL+ F  +   G +PD   FV +L AC+H 
Sbjct: 424 RIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHT 483

Query: 375 GLVDKGLQYFHSIK-EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           GL D+G  YF S+  E   +T T  H+ C+ DLL R GR  EAE+ + K+P+KPD   W 
Sbjct: 484 GLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWT 543

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           SLL  CR H +L  AK  A  L  +EP     YV ++NIYA
Sbjct: 544 SLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYA 584



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 214/439 (48%), Gaps = 48/439 (10%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KE L+ L ++      P    + + +  C    +L +G ++H  +  S  +    +SN L
Sbjct: 40  KETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNAL 99

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L+MY KCG++S A+ +F +M                     E+ RN+          SW+
Sbjct: 100 LNMYKKCGSLSHAKRVFAKM---------------------ERTRNV---------ISWS 129

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            M   +  +    EAL  +R M       + K  + ++LSA S+   ++ G+ IH  I  
Sbjct: 130 IMAGAHALHGNVWEALRHFRFML-LLGIKATKSAMVTILSACSSPALVQDGRMIHSCIAL 188

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGF 245
           +GF+S+ +V +A+  MYG+CG++ EAR++FD M +  RDVVSW  M+  Y    R ++  
Sbjct: 189 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAI 248

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            L+  +    +RP+  T+  +L+AC+      LG+ +H  +     +      +ALV MY
Sbjct: 249 QLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 305

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL---KSGT----Q 358
           +KCG+   ++ VF+ M +  ++SWT++I+ Y +  +  +A   F+ +L   K+G+    +
Sbjct: 306 AKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVK 365

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD + FV +L AC     +++G +         GL+        +V+L  + G   EA  
Sbjct: 366 PDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARR 424

Query: 419 VISKMPMKPDKFLWASLLG 437
           +   +  +PD  LW +++ 
Sbjct: 425 IFDAVCSRPDVQLWNAMIA 443



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 38/354 (10%)

Query: 10  RLKEALQILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R K+A+Q+  ++   P    Y SL+  C     +  G+ +H  + +   +  V + N L+
Sbjct: 243 RGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALV 302

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MYAKCG+ ++A+ +FD+M++R + S+ T+IS + +   + +A +LF +M + +      
Sbjct: 303 SMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK----- 357

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
             +G  +  +P                  +     ++L+A + +  L  GK +       
Sbjct: 358 --NGSSQRVKP------------------DALAFVTILNACADVSALEQGKMVSEQAASC 397

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFAL 247
           G  SD+ V +A+ ++YGKCG I EAR+IFD +  R DV  W AMI  Y Q G+  E   L
Sbjct: 398 GLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKL 457

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH---- 303
           F  +   G+RP++F+F  +L AC+    E+ GK     MT      Y      + H    
Sbjct: 458 FWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMT----TEYRNVTRTIQHFGCV 513

Query: 304 --MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
             +  + G ++ +++    +P +PD V+WTSL+A    +    +A E    LL+
Sbjct: 514 ADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLR 567



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 163/324 (50%), Gaps = 18/324 (5%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD-LYRMMQNFENSVSNKFTLSSVLSAV 169
           A+  FD + QR+ +SWT +++ +    Q  E L  L RM Q+      +  T  + L + 
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQD--GVRPDAVTFITALGSC 68

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSW 228
              + LR G  IH  ++ +  + D  V +AL +MY KCGS++ A+++F KM   R+V+SW
Sbjct: 69  GDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW 128

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           + M G +   G   E    F  ++  GI+        +L+AC+  A  + G+ +H  +  
Sbjct: 129 SIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIAL 188

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP--DLVSWTSLIAGYAQNGMPDKAL 346
            G++     A+A++ MY +CG VE ++KVF+ M     D+VSW  +++ Y  N   D+  
Sbjct: 189 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHN---DRGK 245

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL----QYFHSIKEKHGLTYTADHYAC 402
           +  +L  +   +PD + +V +L+AC+ A  V  G     Q  +   EK+ +   A     
Sbjct: 246 DAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNA----- 300

Query: 403 IVDLLARSGRFHEAEDVISKMPMK 426
           +V + A+ G   EA  V  KM  +
Sbjct: 301 LVSMYAKCGSHTEARAVFDKMEQR 324



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 126/273 (46%), Gaps = 39/273 (14%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY  C S  +A+  FD +  R++ SWT ++  +   G+ +E       + + G+RP+A T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 263 FAGVLNACADHAAEELGKQVHGYM--TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           F   L +C D  +   G ++H  +  +R+  DP    ++AL++MY KCG++ ++K+VF  
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPK--VSNALLNMYKKCGSLSHAKRVFAK 118

Query: 321 MPRP-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           M R  +++SW+ +   +A +G   +AL +F  +L  G +      V +L+AC+   LV  
Sbjct: 119 MERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQD 178

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA-----------EDVIS------- 421
           G +  HS     G          ++ +  R G   EA            DV+S       
Sbjct: 179 G-RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLST 237

Query: 422 ---------------KMPMKPDKFLWASLLGGC 439
                          +M ++PDK  + SLL  C
Sbjct: 238 YVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSAC 270


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 280/511 (54%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +  L    R++EAL ++  +         + Y+S +  C +  +L  GK++H+ +  +  
Sbjct: 262 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 321

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               ++++ L+++YAK                                G  ++A+ +F+ 
Sbjct: 322 HIDPYVASALVELYAK-------------------------------SGCFKEAKGVFNS 350

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R+N +WT +ISG+++Y    E+++L+  M+  E    ++F L++++S   +   L L
Sbjct: 351 LHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDLCL 409

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKC------------------------------ 207
           G+++H   +++G     VV ++L  MY KC                              
Sbjct: 410 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 469

Query: 208 -GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAG 265
            G++ +AR+ FD M +++V++W AM+G Y Q G  E+G  ++  ++    +RP+  T+  
Sbjct: 470 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 529

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G   ++G    +  A+A++ MYSKCG +  ++KVF+ +   D
Sbjct: 530 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 589

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++I GY+Q+GM  +A+E F+ +LK G +PD+I +V VL+ C+H+GLV +G  YF 
Sbjct: 590 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 649

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +K  H ++   +H++C+VDLL R+G   EA+D+I  MPMKP   +W +LL  C+IHGN 
Sbjct: 650 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNN 709

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ AA+ +FE++  +  +Y+ MA IYA A
Sbjct: 710 ELAELAAKHVFELDSPDSGSYMLMAKIYADA 740



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/479 (27%), Positives = 217/479 (45%), Gaps = 41/479 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ-TLFDEM 87
           ++  ++ C    AL   + +H  L + G    VF+ N LL  Y  CG +SDA+  L  ++
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
              +V ++N M++G+ K G L  A  LF  MP RD  SW  ++SGY +  Q + +L+ + 
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M    +S  N FTL+  + +  A+    L  ++   + +     D  V +AL DM+ +C
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 206

Query: 208 GS-------------------------------INEARQIFDKMVDRDVVSWTAMIGRYF 236
           G+                               ++ A ++FD M +RDVVSW  M+    
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 266

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR--IGYDPY 294
           Q GR  E   +  ++   G+R ++ T+   L ACA  ++   GKQ+H  + R     DPY
Sbjct: 267 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 326

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
              ASALV +Y+K G  + +K VFN +   + V+WT LI+G+ Q G   +++E F  +  
Sbjct: 327 --VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA 384

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
                D      +++ C     +  G Q  HS+  K G          ++ + A+     
Sbjct: 385 ELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQ 443

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            AE +   M  K D   W S++      GN+  A+   + + E   +N  T+  M   Y
Sbjct: 444 SAEAIFRFMNEK-DIVSWTSMITAYSQVGNVAKAREFFDGMSE---KNVITWNAMLGAY 498


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 260/471 (55%), Gaps = 43/471 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++L +   P    +  +++ C   R ++ G  VH  +  +GF+  +++S CLL MY  CG
Sbjct: 97  EMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCG 156

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            ++                                   +F+++PQ +  +W ++ISG+V 
Sbjct: 157 EVN-------------------------------YGLRVFEDIPQWNVVAWGSLISGFVN 185

Query: 136 YNQPIEALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS-- 192
            N+  +A++ +R MQ+  N V +N+  +  +L A    + +  GK  HG++   GFD   
Sbjct: 186 NNRFSDAIEAFREMQS--NGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYF 243

Query: 193 ------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
                 + ++ ++L DMY KCG +  AR +FD M +R +VSW ++I  Y Q G  EE   
Sbjct: 244 QSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALC 303

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F +++  GI P+  TF  V+ A       +LG+ +H Y+++ G+   +    ALV+MY+
Sbjct: 304 MFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYA 363

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFV 365
           K G+ E++KK F  + + D ++WT +I G A +G  ++AL  F+ + + G   PD I ++
Sbjct: 364 KTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYL 423

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           GVL AC+H GLV++G +YF  +++ HGL  T +HY C+VD+L+R+GRF EAE ++  MP+
Sbjct: 424 GVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV 483

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           KP+  +W +LL GC IH NL+L  R    + E E      YV ++NIYA A
Sbjct: 484 KPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKA 534



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 186/378 (49%), Gaps = 11/378 (2%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
           +L  AR++F+ +     + W +MI GY     P +AL  Y+ M   +    + FT   VL
Sbjct: 56  NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLR-KGYSPDYFTFPYVL 114

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
            A S ++ ++ G  +HG++++TGF+ +  V + L  MY  CG +N   ++F+ +   +VV
Sbjct: 115 KACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVV 174

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           +W ++I  +    R  +    F E+  +G++ N      +L AC        GK  HG++
Sbjct: 175 AWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFL 234

Query: 287 TRIGYDPY--------SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
             +G+DPY           A++L+ MY+KCG++  ++ +F+GMP   LVSW S+I GY+Q
Sbjct: 235 QGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQ 294

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           NG  ++AL  F  +L  G  PD + F+ V+ A    G    G Q  H+   K G    A 
Sbjct: 295 NGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLG-QSIHAYVSKTGFVKDAA 353

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
               +V++ A++G    A+     +  K D   W  ++ G   HG+ + A    + + E 
Sbjct: 354 IVCALVNMYAKTGDAESAKKAFEDLE-KKDTIAWTVVIIGLASHGHGNEALSIFQRMQEK 412

Query: 459 EPENPATYVTMANIYASA 476
               P     +  +YA +
Sbjct: 413 GNATPDGITYLGVLYACS 430



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 140/295 (47%), Gaps = 13/295 (4%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG---SINEARQIFDKMV 221
           +LS +   + L    ++HG ++++    + +  S L D    C    +++ AR +F+ + 
Sbjct: 9   ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 68

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
              V  W +MI  Y      ++    + E+++ G  P+ FTF  VL AC+     + G  
Sbjct: 69  CPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSC 128

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VHG++ + G++   + ++ L+HMY  CG V    +VF  +P+ ++V+W SLI+G+  N  
Sbjct: 129 VHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNR 188

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG--------L 393
              A+E F  +  +G + +  + V +L AC     +  G ++FH   +  G        +
Sbjct: 189 FSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTG-KWFHGFLQGLGFDPYFQSKV 247

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            +       ++D+ A+ G    A  +   MP +     W S++ G   +G+ + A
Sbjct: 248 GFNVILATSLIDMYAKCGDLRTARYLFDGMPERT-LVSWNSIITGYSQNGDAEEA 301


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/530 (32%), Positives = 268/530 (50%), Gaps = 70/530 (13%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +LH    P+   Y  +++ C    A+E+G ++HSH K  G +  VF+   L+D YAKCG 
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 77  ISDAQTLFD-------------------------------EMQERDVCSYNTMISG---- 101
           + +AQ LF                                +MQE  +C  ++ I G    
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 102 -----------------------------------FTKGGSLEQARNLFDEMPQRDNFSW 126
                                              + K   L  AR +FD M  R+  SW
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSW 279

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           +AMI GYV  +   EAL+L+  M   +       TL SVL A + +  L  G+++H YI+
Sbjct: 280 SAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII 339

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G   D ++ + L  MY KCG I++A + FD M  +D VS++A++    Q G      +
Sbjct: 340 KLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALS 399

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F  +  SGI P+  T  GVL AC+  AA + G   HGY+   G+   +   +AL+ MYS
Sbjct: 400 IFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYS 459

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  +++VFN M R D+VSW ++I GY  +G+  +AL  F  LL  G +PD I F+ 
Sbjct: 460 KCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFIC 519

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L++C+H+GLV +G  +F ++     +    +H  C+VD+L R+G   EA   I  MP +
Sbjct: 520 LLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFE 579

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W++LL  CRIH N++L +  ++ +  + PE+   +V ++NIY++A
Sbjct: 580 PDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAA 629



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 192/422 (45%), Gaps = 37/422 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L++ C Q+++L E KK+H H   +       + + L  +Y  C  +           
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV---------- 60

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE-ALDLYR 147
                                 AR LFDE+P      W  +I  Y  +N P + A+DLY 
Sbjct: 61  ---------------------LARRLFDEIPNPSVILWNQIIRAYA-WNGPFDGAIDLYH 98

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M +      NK+T   VL A S +  +  G EIH +    G +SD  V +AL D Y KC
Sbjct: 99  SMLHL-GVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKC 157

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G + EA+++F  M  RDVV+W AMI      G  ++   L  ++ + GI PN+ T  GVL
Sbjct: 158 GILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL 217

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
               +  A   GK +HGY  R  +D      + L+ MY+KC  +  ++K+F+ M   + V
Sbjct: 218 PTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEV 277

Query: 328 SWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           SW+++I GY  +    +ALE F +++LK    P  +    VL AC     + +G +  H 
Sbjct: 278 SWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG-RKLHC 336

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              K G          ++ + A+ G   +A      M  K D   +++++ GC  +GN  
Sbjct: 337 YIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPK-DSVSFSAIVSGCVQNGNAA 395

Query: 447 LA 448
           +A
Sbjct: 396 VA 397


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/517 (33%), Positives = 277/517 (53%), Gaps = 60/517 (11%)

Query: 14  ALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVH-SHLKSSGFKPGVF----IS 64
           ALQ+  Q+      P P  +SS++       +L   ++ H   L    FK G      + 
Sbjct: 114 ALQLFVQMKRLGFVPDPFTFSSVLG----ALSLIADEETHCQQLHCEVFKWGALSVPSVL 169

Query: 65  NCLLDMYAKCGN---------ISDAQTLFDEMQ--ERDVCSYNTMISGFTKGGSLEQARN 113
           N L+  Y  C +         ++ A+ LFDE     RD  ++ T+I+G+ +   L  AR 
Sbjct: 170 NALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARE 229

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           L + M      +W AMISGYV      EA DL R M +    + +++T +SV+SA S   
Sbjct: 230 LLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQL-DEYTYTSVISAASNAG 288

Query: 174 CLRLGKEIHGYIMRTGFD-SDEVVWS---ALSDMYGKCGSINEARQIFDKMVDRDVVSW- 228
              +G+++H Y++RT    S   V S   AL  +Y +CG + EAR++FDKM  +D+VSW 
Sbjct: 289 LFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWN 348

Query: 229 ------------------------------TAMIGRYFQEGRREEGFALFSELIKSGIRP 258
                                         T MI    Q G  EEG  LF+++   G+ P
Sbjct: 349 AILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEP 408

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
             + +AG + +C+   + + G+Q+H  + ++G+D      +AL+ MYS+CG VE +  VF
Sbjct: 409 CDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVF 468

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
             MP  D VSW ++IA  AQ+G   +A++ +E +LK    PD I F+ +L+AC+HAGLV 
Sbjct: 469 LTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVK 528

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G  YF +++  +G+T   DHY+ ++DLL R+G F EA++V   MP +P   +W +LL G
Sbjct: 529 EGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAG 588

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           C IHGN++L  +AA+ L E+ P+   TY++++N+YA+
Sbjct: 589 CWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAA 625



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 213/480 (44%), Gaps = 83/480 (17%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
            + VH+H+ +SGFKP   I N L+D Y K  NI  A+ LFD++ + D+ +  TM+S ++ 
Sbjct: 15  ARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSA 74

Query: 105 GGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
            G+++ A  LF+  P   RD  S+ AMI+ +   +    AL L+  M+     V + FT 
Sbjct: 75  AGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRL-GFVPDPFTF 133

Query: 163 SSVLSAVSAI-----QCLRLGKEIHGY--------------------------------I 185
           SSVL A+S I      C +L  E+  +                                 
Sbjct: 134 SSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAA 193

Query: 186 MRTGFDS------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
            R  FD       DE  W+ +   Y +   +  AR++ + M D   V+W AMI  Y   G
Sbjct: 194 ARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRG 253

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS-FAA 298
             EE F L   +   GI+ + +T+  V++A ++     +G+QVH Y+ R    P   F  
Sbjct: 254 FYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVL 313

Query: 299 S---ALVHMYSKCGNVENSKKVFNGMPRPDLVS--------------------------- 328
           S   AL+ +Y++CG +  +++VF+ MP  DLVS                           
Sbjct: 314 SVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVR 373

Query: 329 ----WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
               WT +I+G AQNG  ++ L+ F  +   G +P    + G + +C+  G +D G Q  
Sbjct: 374 SLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNG-QQL 432

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           HS   + G   +      ++ + +R G    A+ V   MP   D   W +++     HG+
Sbjct: 433 HSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV-DSVSWNAMIAALAQHGH 491



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 120/254 (47%), Gaps = 9/254 (3%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N RR++EA  I  ++   S   ++ +I    QN   EEG K+ + +K  G +P  +    
Sbjct: 356 NARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAG 415

Query: 67  LLDMYAKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +   +  G++ + Q L  ++     +  +   N +I+ +++ G +E A  +F  MP  D
Sbjct: 416 AIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVD 475

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + SW AMI+   ++   ++A+ LY  M   E+ + ++ T  ++LSA S    ++ G+   
Sbjct: 476 SVSWNAMIAALAQHGHGVQAIQLYEKMLK-EDILPDRITFLTILSACSHAGLVKEGRHYF 534

Query: 183 GYIMRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEG 239
              MR   G   +E  +S L D+  + G  +EA+ + + M  +     W A++   +  G
Sbjct: 535 D-TMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHG 593

Query: 240 RREEGFALFSELIK 253
             E G      L++
Sbjct: 594 NMELGIQAADRLLE 607


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 281/538 (52%), Gaps = 93/538 (17%)

Query: 10  RLKEALQILHQISHPSPSIYS------SLIQFCRQNRALE------EGKKVHSHLKSSGF 57
           R  +A+++L ++  P+P ++S       L Q  +  RA++      E   V  +L   GF
Sbjct: 158 RFDDAVKLLREM--PAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGF 215

Query: 58  -----------------KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
                             P V     LL+ Y + G ISDA+ LFD M ER+V + N M+ 
Sbjct: 216 VRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLD 275

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
           G+ +   LE+A  LFDEMP +++ SWT +ISG  R  +  EA DL   M    N V+ K 
Sbjct: 276 GYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSF--NCVAAKT 333

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTG-------FDS----DEVVWSALSDMYGKCGS 209
            L                  +HGY+ R         FD     D V W+ +   Y + G 
Sbjct: 334 AL------------------MHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGM 375

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF---------------SELIKS 254
           + EA  +F +M ++D VSW  MI  Y Q G+  +   +F               S  +++
Sbjct: 376 LEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQN 435

Query: 255 GIRPNAF----------------TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G+  +AF                T+A  L ACA+ AA  +G+Q+H  + R G+    FA 
Sbjct: 436 GLFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFAR 495

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +AL+  Y+KCG +  +K++F+ M   D+VSW +L+ GYA NG   +A+  F  +  +G +
Sbjct: 496 NALISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVR 555

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD + FVG+L+AC+ AGL+D+GL +F+S+ E++ L   A+HYAC+ DLL R+G+ +EA +
Sbjct: 556 PDEVTFVGILSACSRAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFE 615

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++  M ++P+  +W +LLG C+++ N +LA+ AAE L E+EP   + YV ++NI A A
Sbjct: 616 LVQGMQIQPNAGVWGALLGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEA 673



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 192/439 (43%), Gaps = 79/439 (17%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N +L   A+ G I +A+ LFD M  R+  S+N MI+  +  G +  AR LFD MP RD+F
Sbjct: 53  NSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDF 112

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQ-------------------NFENSVS-------- 157
           SWT M+S Y R  +   A D+   M                     F+++V         
Sbjct: 113 SWTVMVSCYARAGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAP 172

Query: 158 NKFTLSSVLSA-------VSAIQCLRLGKE---------IHGYIMRTGFDS--------- 192
           + F+ +S L+        V A+Q      E         + G++     D+         
Sbjct: 173 DLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIE 232

Query: 193 --DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             + V W  L + Y + G I++AR +FD+M +R+VV+   M+  Y +  R EE   LF E
Sbjct: 233 SPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDE 292

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF----AASALVHMYS 306
           +       N+ ++  +++  A     +  K +         D  SF    A +AL+H Y 
Sbjct: 293 MPGK----NSISWTTIISGLARAGKLQEAKDL--------LDKMSFNCVAAKTALMHGYL 340

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           +   V +++++F+GM   D V W ++I+GY Q GM ++A+    LL +     D + +  
Sbjct: 341 QRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAM----LLFQRMPNKDTVSWNT 396

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           ++      G + K +  F  +  K+ +++ +     ++    ++G F +A      M   
Sbjct: 397 MIAGYAQGGQMRKAIGIFRRMSRKNTVSWNS-----VISGFVQNGLFVDAFHHFMLMRRG 451

Query: 427 PDKFLWASLLGGCRIHGNL 445
            ++  W++     R   NL
Sbjct: 452 TNRADWSTYASCLRACANL 470



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           ++ G +  ++++F+ MPR + V++ S+++  A++G  D+A   F+ +       + + + 
Sbjct: 29  ARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGM----PSRNAVSWN 84

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            ++ A +  G V      F  +  +   ++T      +V   AR+G    A DV+ +MP 
Sbjct: 85  AMIAALSDHGRVADARGLFDRMPSRDDFSWTV-----MVSCYARAGELELARDVLDRMPG 139

Query: 426 KPDKFLWASLLGGCRIHGNLDLA 448
                 + +++ G   +G  D A
Sbjct: 140 DKCTACYNAMISGYAKNGRFDDA 162


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/483 (35%), Positives = 272/483 (56%), Gaps = 44/483 (9%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSS----LIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L  QR+ +EAL +   +   S    +     L++ C          ++H+H+  +G +P 
Sbjct: 29  LSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVIRTGSQPD 88

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQ-ARNLFDEMP 119
            +  + L++ YAKC                                SL   AR +FDEMP
Sbjct: 89  PYTRSSLINTYAKC--------------------------------SLHHHARKVFDEMP 116

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE------NSVSNKFTLSSVLSAVSAIQ 173
                 + AMISGY   ++P+ A+ L+R M+  E      +   N  TL S++S  S   
Sbjct: 117 N-PTICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVAT 175

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            L +G  +HG  +R GF +D  V ++L  MY KCG +  AR++FD+M+ RD+++W AMI 
Sbjct: 176 HLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMIS 235

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            Y Q G       ++SE+  SG+  +A T  GV++ACA+  A+ +G++V   + R G+  
Sbjct: 236 GYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGC 295

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F  +ALV+MY++CGN+  +++VF+      +VSWT++I GY  +G  + ALE F+ ++
Sbjct: 296 NPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMV 355

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +S  +PD  VFV VL+AC+HAGL D+GL+YF  ++ K+GL    +HY+C+VDLL R+GR 
Sbjct: 356 ESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRL 415

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            EA ++I  M +KPD  +W +LLG C+IH N ++A+ A + + E+EP N   YV ++NIY
Sbjct: 416 EEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIY 475

Query: 474 ASA 476
             A
Sbjct: 476 TDA 478


>gi|242039301|ref|XP_002467045.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
 gi|241920899|gb|EER94043.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
          Length = 564

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/434 (36%), Positives = 248/434 (57%), Gaps = 36/434 (8%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G ++H      GF   +F+++ L DMY+KCG + +A  +FD+M  RD  ++ TMI G+ K
Sbjct: 138 GTQLHCIGTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAK 197

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            GSL+ A   F +M             G V  +Q +                       S
Sbjct: 198 NGSLKAAILAFRDMK----------CEGLVGADQHV---------------------FCS 226

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR- 223
            LSA   ++    G+ +H  I++ GF+ + VV +AL DMY K G +  A ++    +D  
Sbjct: 227 ALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLESASRVVK--IDPG 284

Query: 224 --DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
             +VVS T++I  Y +  R EE    ++EL + G+ PN FTFA ++  CA     E G Q
Sbjct: 285 GWNVVSGTSLIDGYIEVDRIEEALETYTELGRQGVEPNEFTFASMIKGCAMQDLLEQGAQ 344

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H  + +      SF  S LV+MY KCG +  S ++FN +     V+W ++I  YAQ+G 
Sbjct: 345 LHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSLQLFNEIGYHSEVAWNAVINVYAQHGH 404

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              A++ F+ +  SG +P+HI FV +LTAC+HAGLVD+GL+YF+S+K+ HG+    +HY+
Sbjct: 405 GWGAIQAFDRMTASGIRPNHITFVCLLTACSHAGLVDEGLEYFYSMKDAHGIEPKEEHYS 464

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           CI+D+  R+GR  EAE  IS+MP+KP+ + W SLLG CR+ GN +L + AA+ L +++P+
Sbjct: 465 CIIDMYGRAGRLDEAEKFISEMPVKPNAYGWCSLLGACRMRGNKELGEIAAQNLMKLDPD 524

Query: 462 NPATYVTMANIYAS 475
           N   +V+++ IYAS
Sbjct: 525 NTGIHVSLSGIYAS 538



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 170/352 (48%), Gaps = 35/352 (9%)

Query: 34  QFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           Q C +   +  G+ +H+ L  +G      F++N L+ MY+ C + + A            
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAV----------- 73

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                                +F  +P+ +  SWT ++SG V+ +   +AL  +  M+  
Sbjct: 74  --------------------RVFGVLPRPNPVSWTTLVSGLVQNSMHHDALAAFAAMRR- 112

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
            +    +F LSS   A +A+   R G ++H    R GFD++  V S L+DMY KCG ++E
Sbjct: 113 AHVAPTQFALSSAARAAAALSAPRPGTQLHCIGTRFGFDTELFVASNLADMYSKCGLLDE 172

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACA 271
           A ++FD+M  RD V+WT MI  Y + G  +     F ++   G +  +   F   L+A  
Sbjct: 173 ACRVFDQMPHRDAVTWTTMIDGYAKNGSLKAAILAFRDMKCEGLVGADQHVFCSALSASG 232

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-DLVSWT 330
                  G+ +H  + + G++  +   +AL+ MY+K G++E++ +V    P   ++VS T
Sbjct: 233 GLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLESASRVVKIDPGGWNVVSGT 292

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           SLI GY +    ++ALE +  L + G +P+   F  ++  C    L+++G Q
Sbjct: 293 SLIDGYIEVDRIEEALETYTELGRQGVEPNEFTFASMIKGCAMQDLLEQGAQ 344



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 137/305 (44%), Gaps = 18/305 (5%)

Query: 175 LRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
           +R G+ +H  ++ TG  +    + + L  MY  C     A ++F  +   + VSWT ++ 
Sbjct: 33  IRRGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAVRVFGVLPRPNPVSWTTLVS 92

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
              Q     +  A F+ + ++ + P  F  +    A A  +A   G Q+H   TR G+D 
Sbjct: 93  GLVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAALSAPRPGTQLHCIGTRFGFDT 152

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             F AS L  MYSKCG ++ + +VF+ MP  D V+WT++I GYA+NG    A+  F  + 
Sbjct: 153 ELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAKNGSLKAAILAFRDMK 212

Query: 354 KSG-TQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSG 411
             G    D  VF   L+A    GL D    +  H    K G          ++D+ A+SG
Sbjct: 213 CEGLVGADQHVFCSALSA--SGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSG 270

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHG--NLDLAKRAAEALFE-----IEPENPA 464
               A  V+     K D   W  + G   I G   +D  + A E   E     +EP N  
Sbjct: 271 DLESASRVV-----KIDPGGWNVVSGTSLIDGYIEVDRIEEALETYTELGRQGVEP-NEF 324

Query: 465 TYVTM 469
           T+ +M
Sbjct: 325 TFASM 329



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 2   IDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID      R++EAL+   ++      P+   ++S+I+ C     LE+G ++H+ +  +  
Sbjct: 295 IDGYIEVDRIEEALETYTELGRQGVEPNEFTFASMIKGCAMQDLLEQGAQLHAQVIKTSL 354

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               F+ + L+ MY KCG IS +  LF+E+      ++N +I+ + + G    A   FD 
Sbjct: 355 ISDSFVGSTLVYMYGKCGLISLSLQLFNEIGYHSEVAWNAVINVYAQHGHGWGAIQAFDR 414

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M            SG     +P                  N  T   +L+A S    +  
Sbjct: 415 MTA----------SGI----RP------------------NHITFVCLLTACSHAGLVDE 442

Query: 178 GKEIHGYIMRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGR 234
           G E + Y M+   G +  E  +S + DMYG+ G ++EA +   +M V  +   W +++G 
Sbjct: 443 GLE-YFYSMKDAHGIEPKEEHYSCIIDMYGRAGRLDEAEKFISEMPVKPNAYGWCSLLGA 501

Query: 235 YFQEGRREEGFALFSELIK 253
               G +E G      L+K
Sbjct: 502 CRMRGNKELGEIAAQNLMK 520


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 267/452 (59%), Gaps = 11/452 (2%)

Query: 32  LIQFCRQNRALEEGKKVHS---HLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           LIQF R+  +++  K       H+  S F    + +N L D   K    S  + L  E+ 
Sbjct: 8   LIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAY-ANALQDCIQK-DEPSRGKGLHCEIL 65

Query: 89  ER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           +R    D+ ++N +++ + K   L  A  LFDEMP+R+  S+  +I GY    + +EA++
Sbjct: 66  KRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIE 125

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L+  +      + N+FT +SVL A + ++ L LG +IH ++++ G  SD  V +AL D+Y
Sbjct: 126 LFVRLH--REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVY 183

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            KCG +  + ++F +   R+ V+W  +I  + Q G  E+   LF  +++  ++    T++
Sbjct: 184 AKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYS 243

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
             L ACA  AA E G Q+H    +  +D      +AL+ MY+KCG++++++ VF+ M + 
Sbjct: 244 SALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQ 303

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D VSW ++I+GY+ +G+  +AL  F+ + ++  +PD + FVGVL+AC +AGL+D+G  YF
Sbjct: 304 DEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYF 363

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            S+ + HG+    +HY C+V LL R G   +A  +I ++P +P   +W +LLG C IH +
Sbjct: 364 TSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHND 423

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++L + +A+ + E+EP++ AT+V ++N+YA+A
Sbjct: 424 IELGRISAQRVLEMEPQDKATHVLLSNMYATA 455



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 37/331 (11%)

Query: 10  RLKEALQI---LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           R  EA+++   LH+   P+   ++S++Q C     L  G ++H H+   G    VF+SN 
Sbjct: 119 RFLEAIELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNA 178

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+YAKCG + ++  LF E   R+  ++NT+I G  + G  E+A  LF  M +      
Sbjct: 179 LMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLE------ 232

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                              YR+        + + T SS L A +++  L  G +IH   +
Sbjct: 233 -------------------YRVQ-------ATEVTYSSALRACASLAALEPGLQIHSLTV 266

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +T FD D VV +AL DMY KCGSI +AR +FD M  +D VSW AMI  Y   G   E   
Sbjct: 267 KTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALR 326

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMY 305
           +F ++ ++ ++P+  TF GVL+ACA+    + G+     M +  G +P     + +V + 
Sbjct: 327 IFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLL 386

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            + G+++ + K+ + +P +P ++ W +L+  
Sbjct: 387 GRGGHLDKAVKLIDEIPFQPSVMVWRALLGA 417



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 68/115 (59%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++ L+  L +L      +   YSS ++ C    ALE G ++HS    + F   + ++N L
Sbjct: 221 EKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNAL 280

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           +DMYAKCG+I DA+ +FD M ++D  S+N MISG++  G   +A  +FD+M + +
Sbjct: 281 IDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETE 335


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 34/463 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
            +L   S P    +  +++ C        G+++H H+   G +   F+   L+ MY KCG
Sbjct: 40  SMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCG 99

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS--WTAMISGY 133
            + D                               AR +F+E P        + A+ISGY
Sbjct: 100 LVED-------------------------------ARKVFEENPHSSQLGVCYNALISGY 128

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
              ++  +A  ++R M+    SV +  T+  ++   +  + L LG+ +HG  ++ G  S+
Sbjct: 129 TANSKVSDAAFMFRRMKETGVSV-DSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSE 187

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V ++   MY KCGS+   R++FD+M  + +++W A+I  Y Q G   +   LF ++  
Sbjct: 188 VAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKS 247

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           SG+ P+ FT   VL++CA   A+++G++V   +   G+ P  F ++AL+ MY++CGN+  
Sbjct: 248 SGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAK 307

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++ VF+ MP   LVSWT++I  Y  +GM +  L  F+ ++K G +PD  VFV VL+AC+H
Sbjct: 308 ARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSH 367

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           +GL DKGL+ F ++K ++ L    +HY+C+VDLL R+GR  EA + I  MP++PD  +W 
Sbjct: 368 SGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWG 427

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LLG C+IH N+D+A+ A   + E EP N   YV M+NIY+ +
Sbjct: 428 ALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDS 470



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 160/321 (49%), Gaps = 5/321 (1%)

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW   +      +   E++ LYR M     S  + F+   +L + +++     G+++H +
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLR-SGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 75

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV--VSWTAMIGRYFQEGRRE 242
           ++R G +++  V +AL  MY KCG + +AR++F++        V + A+I  Y    +  
Sbjct: 76  VIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   +F  + ++G+  ++ T  G++  C       LG+ +HG   + G        ++ +
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY KCG+VE+ +++F+ MP   L++W ++I+GY+QNG+    LE FE +  SG  PD  
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
             V VL++C H G    G Q    + E +G          ++ + AR G   +A  V   
Sbjct: 256 TLVSVLSSCAHLGAKKIG-QEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDI 314

Query: 423 MPMKPDKFLWASLLGGCRIHG 443
           MP+K     W +++G   +HG
Sbjct: 315 MPVK-SLVSWTAMIGCYGMHG 334



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 152/329 (46%), Gaps = 40/329 (12%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           RR+KE       +S  S +I   L+  C     L  G+ +H      G    V + N  +
Sbjct: 142 RRMKET-----GVSVDSVTILG-LVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY KCG++   + LFDEM  + + ++N +ISG+++ G       LF++M          
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKS-------- 247

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                                        + FTL SVLS+ + +   ++G+E+   +   
Sbjct: 248 ------------------------SGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEAN 283

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF  +  + +AL  MY +CG++ +AR +FD M  + +VSWTAMIG Y   G  E G  LF
Sbjct: 284 GFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLF 343

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSK 307
            ++IK GIRP+   F  VL+AC+     + G ++   M R    +P     S LV +  +
Sbjct: 344 DDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGR 403

Query: 308 CGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            G ++ + +  + MP  PD   W +L+  
Sbjct: 404 AGRLDEAMEFIDSMPVEPDGAVWGALLGA 432


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/530 (32%), Positives = 269/530 (50%), Gaps = 70/530 (13%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +LH    P+   Y  +++ C    A+E+G ++HSH K  G +  VF+   L+D YAKCG 
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 77  ISDAQTLFD-------------------------------EMQERDVCSYNTMISG---- 101
           + +AQ LF                                +MQE  +C  ++ I G    
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 102 -----------------------------------FTKGGSLEQARNLFDEMPQRDNFSW 126
                                              + K   L  AR +FD M  R+  SW
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSW 279

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           +AMI GYV  +   EAL+L+  M   +       TL SVL A + +  L  G+++H YI+
Sbjct: 280 SAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII 339

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G   D ++ + L  MY KCG I++A + FD+M  +D VS++A++    Q G      +
Sbjct: 340 KLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALS 399

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F  +  SGI P+  T  GVL AC+  AA + G   HGY+   G+   +   +AL+ MYS
Sbjct: 400 IFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYS 459

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  +++VFN M R D+VSW ++I GY  +G+  +AL  F  LL  G +PD I F+ 
Sbjct: 460 KCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFIC 519

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L++C+H+GLV +G  +F ++     +    +H  C+VD+L R+G   EA   I  MP +
Sbjct: 520 LLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFE 579

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W++LL  CRIH N++L +  ++ +  + PE+   +V ++NIY++A
Sbjct: 580 PDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAA 629



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 193/422 (45%), Gaps = 37/422 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L++ C Q+++L E KK+H H   +       + + L  +Y  C  +           
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV---------- 60

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE-ALDLYR 147
                                 AR LFDE+P      W  +I  Y  +N P + A+DLY 
Sbjct: 61  ---------------------LARRLFDEIPNPSVILWNQIIRAYA-WNGPFDGAIDLYH 98

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M +      NK+T   VL A S +  +  G EIH +    G +SD  V +AL D Y KC
Sbjct: 99  SMLHL-GVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKC 157

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G + EA+++F  M  RDVV+W AMI      G  ++   L  ++ + GI PN+ T  GVL
Sbjct: 158 GILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL 217

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
               +  A   GK +HGY  R  +D      + L+ MY+KC  +  ++K+F+ M   + V
Sbjct: 218 PTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEV 277

Query: 328 SWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           SW+++I GY  +    +ALE F +++LK    P  +    VL AC     + +G +  H 
Sbjct: 278 SWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG-RKLHC 336

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
              K G          ++ + A+ G   +A     +M  K D   +++++ GC  +GN  
Sbjct: 337 YIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPK-DSVSFSAIVSGCVQNGNAA 395

Query: 447 LA 448
           +A
Sbjct: 396 VA 397


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 248/446 (55%), Gaps = 33/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +S I+ C Q+  L+ GK VH +L  SGF+      N L+DMYAKC               
Sbjct: 326 TSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC--------------- 370

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                           G L  A+ +FD    +D+ +W ++I+GY +     E L+ ++MM
Sbjct: 371 ----------------GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMM 414

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +      S  F L  +LS  S +  +  G+ IH  +++ GF+++ ++ ++L D+Y KCG 
Sbjct: 415 KMERKPDSVTFVL--LLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGE 472

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +++  ++F  M   D++SW  +I           GF + +E+   G+ P+  T  G+L  
Sbjct: 473 MDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+  A    GK++HGY+ + G++      +AL+ MYSKCG++EN  KVF  M   D+V+W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T+LI+ +   G   KAL+ F+ +  SG  PD + F+  + AC+H+G+V +GL++F  +K 
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            + L    +HYAC+VDLLARSG   +AE+ I  MPMKPD  LW +LL  CR  GN ++A+
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
           R ++ + E+  ++   YV ++NIYA+
Sbjct: 713 RVSKKILELNSDDTGYYVLVSNIYAT 738



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 199/401 (49%), Gaps = 35/401 (8%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    + S+I  C +   LE G  VH H    GF+  ++I N L+DMY++  ++ +A+ 
Sbjct: 118 QPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARY 177

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+EM  RD  S+N++ISG+   G  E A +++ +      F  T M             
Sbjct: 178 VFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK------FRMTGM------------- 218

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                        V + FT+SSVL A  ++  ++ G  +HG I + G   D ++ + L  
Sbjct: 219 -------------VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLS 265

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY K   + EAR++F KM  +D V+W  MI  Y Q GR E    LF ++I  G  P+  +
Sbjct: 266 MYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLS 324

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
               + AC      ++GK VH Y+   G++  + A + L+ MY+KCG++  +++VF+   
Sbjct: 325 ITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTK 384

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D V+W SLI GY Q+G   + LE F+ ++K   +PD + FV +L+  +    +++G +
Sbjct: 385 CKDSVTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQG-R 442

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
             H    K G          ++D+ A+ G   +   V S M
Sbjct: 443 GIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 211/457 (46%), Gaps = 43/457 (9%)

Query: 24  PSPS---IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           P PS   + SSL++     +   + + VHS + +SG    V  S  L+  YA+  +   +
Sbjct: 14  PEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISS 73

Query: 81  QTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
            ++F  +    +V  +N++I   T  G   QA   + EM ++                QP
Sbjct: 74  VSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKL--------------QP 119

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                             + FT  SV+++ + I  L LG  +H + M  GF+SD  + +A
Sbjct: 120 ------------------DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNA 161

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY +   ++ AR +F++M +RD VSW ++I  Y   G  E+   ++ +   +G+ P+
Sbjct: 162 LIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPD 221

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            FT + VL AC    A + G  VHG + +IG        + L+ MY K   +  +++VF+
Sbjct: 222 CFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFS 281

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D V+W ++I GYAQ G  + +++ F  ++  G  PD +     + AC  +G +  
Sbjct: 282 KMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQV 340

Query: 380 GLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           G ++ H  K   G  +  D  AC  ++D+ A+ G    A++V      K D   W SL+ 
Sbjct: 341 G-KFVH--KYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLIN 396

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           G    G       + + +      +  T+V + +I++
Sbjct: 397 GYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFS 433



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 224/481 (46%), Gaps = 14/481 (2%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+      L  A  +  ++S+     ++SLI     N   E+   ++   + +G  P  
Sbjct: 163 IDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDC 222

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F  + +L        + +   +   +++     DV   N ++S + K   L +AR +F +
Sbjct: 223 FTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSK 282

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  +D+ +W  MI GY +  +   ++ L+  M   +  V +  +++S + A      L++
Sbjct: 283 MAVKDSVTWNTMICGYAQLGRHEASVKLF--MDMIDGFVPDMLSITSTIRACGQSGDLQV 340

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK +H Y++ +GF+ D V  + L DMY KCG +  A+++FD    +D V+W ++I  Y Q
Sbjct: 341 GKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQ 400

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  +EG   F +++K   +P++ TF  +L+  +  A    G+ +H  + + G++     
Sbjct: 401 SGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELII 459

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++L+ +Y+KCG +++  KVF+ M   D++SW ++IA            +    +   G 
Sbjct: 460 GNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGL 519

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD    +G+L  C+   +  +G +  H    K G          ++++ ++ G      
Sbjct: 520 MPDEATVLGILPMCSLLAVRRQGKE-IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCI 578

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYAS 475
            V   M  K D   W +L+    ++G     K+A +A  ++E     P +   +A I+A 
Sbjct: 579 KVFKYMKEK-DVVTWTALISAFGMYGE---GKKALKAFQDMELSGVLPDSVAFIAFIFAC 634

Query: 476 A 476
           +
Sbjct: 635 S 635


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 271/506 (53%), Gaps = 43/506 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A ++   I +P   IY+ +I+   +    +    + S L+  G  P  F    +   
Sbjct: 87  LNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKA 146

Query: 71  YAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
               G +S A+ L   +     E D    N++I  + +    +  + LFDEMP RD  SW
Sbjct: 147 IGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISW 206

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             MISGYV+  +  +A++++  MQ     + ++ T+ S LSA +A++ L LGK+IH Y+ 
Sbjct: 207 NVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYV- 265

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD------------------------ 222
           R       ++ +AL DMY KCG ++ AR +F++M                          
Sbjct: 266 RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARE 325

Query: 223 -------RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
                  RDVV WTAMI  Y Q  R +E  ALF E+    ++P+ F    +L  CA   A
Sbjct: 326 LFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGA 385

Query: 276 EELGKQVHGYM--TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
            E GK +H ++   RI  D  +   +AL+ MY+KCG +E + ++F G+   D  SWTS+I
Sbjct: 386 IEQGKWIHEFIDENRIPID--AVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSII 443

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
            G A NG   KALE F  + ++G +PD I F+GVL+AC+H GLV++G ++F+S++ ++ +
Sbjct: 444 CGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQI 503

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF---LWASLLGGCRIHGNLDLAKR 450
               +HY C+VDLL R+G  +EAE++I K+P +       L+ SLL  CRI+GN+++ +R
Sbjct: 504 KPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGER 563

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
            A+ L + E  + + +  +ANIYA A
Sbjct: 564 VAKQLVKFESSDSSVHTLLANIYAFA 589



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 202/452 (44%), Gaps = 77/452 (17%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC-----GNISDAQTLFD 85
           S I + +  +++   K++H+ +   G    +   N L+   A C     GN++ A+ +F 
Sbjct: 39  SCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLM---AFCTDPFNGNLNYAEKMFK 95

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
            ++   +  YN +I  F K G+ ++   LF ++  R++  W                   
Sbjct: 96  YIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKL--REDGLW------------------- 134

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
                       + FT   V  A+  +  +   +++ G + +TG + D  V ++L DMY 
Sbjct: 135 -----------PDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYA 183

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFA 264
           +    +  + +FD+M DRDV+SW  MI  Y +  R E+   +F  +  +SG+ P+  T  
Sbjct: 184 QLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVV 243

Query: 265 GVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSK---------------- 307
             L+AC      ELGK++H Y+   + + P     +AL+ MY K                
Sbjct: 244 STLSACTALKRLELGKKIHHYVRDNVKFTP--IIGNALLDMYCKCGCLSIARAVFEEMPS 301

Query: 308 ---------------CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                          CG +E ++++F G P  D+V WT++I GY Q    D+A+  F  +
Sbjct: 302 KNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREM 361

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
                +PD  + V +LT C   G +++G ++ H   +++ +   A     ++++ A+ G 
Sbjct: 362 QIRKVKPDKFIVVSLLTGCAQTGAIEQG-KWIHEFIDENRIPIDAVVGTALIEMYAKCGF 420

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             +A ++   + +K D   W S++ G  ++G 
Sbjct: 421 IEKALEIFYGLRVK-DTASWTSIICGLAMNGK 451



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 151/318 (47%), Gaps = 17/318 (5%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC-----GSINEARQIFD 218
           S +S + + + +   K+IH  I R G   D V   +L+ +   C     G++N A ++F 
Sbjct: 39  SCISYLKSCKSMTHLKQIHAQIFRVGLHQDIV---SLNKLMAFCTDPFNGNLNYAEKMFK 95

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            +    ++ +  +I  + ++G  +    LFS+L + G+ P+ FT+  V  A         
Sbjct: 96  YIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSK 155

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            +++ G +T+ G +  ++  ++L+ MY++    +  K +F+ MP  D++SW  +I+GY +
Sbjct: 156 AEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVK 215

Query: 339 NGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
               + A+  F  +  +SG  PD    V  L+ACT    ++ G +  H +++   + +T 
Sbjct: 216 CRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRD--NVKFTP 273

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
                ++D+  + G    A  V  +MP K +   W +++ G    G L+ A+     LFE
Sbjct: 274 IIGNALLDMYCKCGCLSIARAVFEEMPSK-NVICWTTMVSGYANCGELEEARE----LFE 328

Query: 458 IEP-ENPATYVTMANIYA 474
             P  +   +  M N Y 
Sbjct: 329 GSPIRDVVIWTAMINGYV 346



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 39/221 (17%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EA+ +  ++      P   I  SL+  C Q  A+E+GK +H  +  +       +  
Sbjct: 350 RFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGT 409

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L++MYAKCG I  A  +F  ++ +D  S+ ++I G    G   +A  LF +M Q     
Sbjct: 410 ALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAG--- 466

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                   VR                      +  T   VLSA S    +  G++     
Sbjct: 467 --------VR---------------------PDDITFIGVLSACSHGGLVEEGRKFFNS- 496

Query: 186 MRTGFDSDEVV--WSALSDMYGKCGSINEARQIFDKMVDRD 224
           MR  +     V  +  L D+ G+ G +NEA ++  K+ D +
Sbjct: 497 MRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDEN 537


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 255/464 (54%), Gaps = 34/464 (7%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           + +H  +    F+  V +S  LL MY  C ++ +A+ LFDEM E+++ S+N M++G++K 
Sbjct: 218 RMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKA 277

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G ++ AR +F+ +P +D  +W  +I GYVR  +  EAL +YR M +      N   +  +
Sbjct: 278 GFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMIS-AGWEPNDVMMVDL 336

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA------------ 213
           +S       +  G+++   +++ GFD  + + S +  +Y  CG INEA            
Sbjct: 337 ISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENV 396

Query: 214 -------------------RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                               ++F++M +RDV SW+ MI  Y Q  +      LF +++ S
Sbjct: 397 ASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVAS 456

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI+PN  T   VL+A A     + G+  H Y+           ++A++ MY+KCG++ N+
Sbjct: 457 GIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNA 516

Query: 315 KKVFNGM-PRPDLVS-WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
            +VF  +  +   VS W ++I G A +G  + +L+ F  L +   + + I F+GVLTAC 
Sbjct: 517 LEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACC 576

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           H GLV+ G ++F S+K +H +     HY C+VDLL R+GR  EAE++I  MPMK D  +W
Sbjct: 577 HVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIW 636

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +LL  CR HGN+D+ +RAAE L  +EP + A+ V ++N+YA A
Sbjct: 637 GTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADA 680



 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 244/486 (50%), Gaps = 65/486 (13%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +  S ++FC  +  L +GK++H  +  SG     FI N L++MY KCG + DA+++FD  
Sbjct: 68  VLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVC 127

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
              D  SYN MISG+ K G L+ A  LFDEMP +   S+T MI G+ +     +A++L++
Sbjct: 128 PRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFK 187

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M+N    V N+ T+++++SA S    +   + +HG +++  F+   +V + L  MY  C
Sbjct: 188 QMRNV-GVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVC 246

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEG---------------------------- 239
            S+ EAR +FD+M ++++VSW  M+  Y + G                            
Sbjct: 247 SSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYV 306

Query: 240 ---RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
              R  E   ++  +I +G  PN      +++ C    A   G+Q+   + ++G+D Y F
Sbjct: 307 RVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDF 366

Query: 297 AASALVHMYSKCGN-------------------------------VENSKKVFNGMPRPD 325
             S ++H+Y+ CG                                ++ + ++FN MP  D
Sbjct: 367 IQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERD 426

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           + SW+++I+GY QN  P+ ALE F  ++ SG +P+ +  V VL+A   +G + +G ++ H
Sbjct: 427 VFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEG-RWAH 485

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL-WASLLGGCRIHGN 444
                + +T + +  A I+D+ A+ G  + A +V  ++  K      W +++ G  +HG+
Sbjct: 486 EYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGH 545

Query: 445 LDLAKR 450
            +L+ +
Sbjct: 546 ANLSLK 551



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 187/368 (50%), Gaps = 11/368 (2%)

Query: 2   IDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID      R+ EAL +   +      P+  +   LI  C +  A+ EG+++ S +   GF
Sbjct: 302 IDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGF 361

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
               FI + ++ +YA CG I++A   F    + +V S+N +I+G+ +   +++A  LF+E
Sbjct: 362 DCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNE 421

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+RD FSW+ MISGY +  QP  AL+L+  M        N+ T+ SVLSA++    L+ 
Sbjct: 422 MPERDVFSWSTMISGYTQNEQPNLALELFHKMVA-SGIKPNEVTMVSVLSAIATSGTLKE 480

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR--DVVSWTAMIGRY 235
           G+  H Y+        + + +A+ DMY KCGSIN A ++F ++ ++   V  W A+I   
Sbjct: 481 GRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGL 540

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPY 294
              G       +FS+L +  I+ NA TF GVL AC      E GK+    M +    DP 
Sbjct: 541 AVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPD 600

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
                 +V +  + G +E ++++   MP + D+V W +L+A    +G  D      E L 
Sbjct: 601 IKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERAAENLA 660

Query: 354 KSGTQPDH 361
           +   +P H
Sbjct: 661 R--LEPSH 666



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 161/378 (42%), Gaps = 67/378 (17%)

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           +  L S L   S    L  GK+IH  + ++G  S+  + ++L +MYGKCG + +A+ IFD
Sbjct: 66  ELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFD 125

Query: 219 KMVDRDVVSWTAMIGRYFQEGRRE-------------------------------EGFAL 247
                D VS+  MI  Y + G+ +                               +   L
Sbjct: 126 VCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVEL 185

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F ++   G+ PN  T A +++A +        + +HG + ++ ++ +   ++ L+ MY  
Sbjct: 186 FKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCV 245

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL---------------- 351
           C ++  ++ +F+ MP  ++VSW  ++ GY++ G  D A   FE                 
Sbjct: 246 CSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGY 305

Query: 352 ---------------LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
                          ++ +G +P+ ++ V +++ C     + +G Q   ++  K G    
Sbjct: 306 VRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVV-KMGFDCY 364

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
               + I+ L A  GR +EA  +  ++  K +   W +L+ G   +  +D   RA E   
Sbjct: 365 DFIQSTIIHLYAACGRINEA-CLQFRIGSKENVASWNALIAGYVRNRMID---RAMELFN 420

Query: 457 EIEPENPATYVTMANIYA 474
           E+   +  ++ TM + Y 
Sbjct: 421 EMPERDVFSWSTMISGYT 438


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/490 (33%), Positives = 266/490 (54%), Gaps = 25/490 (5%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLI-------QFCRQNRALEEGKKVHSHLKS 54
           ID+    R L EA  +  +    +   ++S+I         CR    L++ +   + +K+
Sbjct: 246 IDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKA 305

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFD--------EMQERDVCSYNTMISGFTKGG 106
             F         +L++   C   S+ Q+L +         +Q  ++ + N  I+ +T+ G
Sbjct: 306 DEFT--------ILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVA-NAFIAAYTRCG 356

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
           +L  +  +FD M  +   SW A++ GY + + P +ALDLY  M +      + FT+ S+L
Sbjct: 357 ALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD-SGLDPDWFTIGSLL 415

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
            A S ++ L  G+EIHG+ +R G   D  +  +L  +Y  CG    A+ +FD M  R +V
Sbjct: 416 LACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLV 475

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SW  MI  Y Q G  +E   LF +++  GI+P       V  AC+  +A  LGK++H + 
Sbjct: 476 SWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFA 535

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            +       F +S+++ MY+K G +  S+++F+ +   D+ SW  +IAGY  +G   +AL
Sbjct: 536 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEAL 595

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           E FE +L+ G +PD   F G+L AC+HAGLV+ GL+YF+ +   H +    +HY C+VD+
Sbjct: 596 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDM 655

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466
           L R+GR  +A  +I +MP  PD  +W+SLL  CRIHGNL L ++ A  L E+EPE P  Y
Sbjct: 656 LGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENY 715

Query: 467 VTMANIYASA 476
           V ++N++A +
Sbjct: 716 VLISNLFAGS 725



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 206/435 (47%), Gaps = 38/435 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +   +++  C     +E+G  VH      G    + ++N L+DMY+KC  +S+AQ  
Sbjct: 202 PDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQL- 260

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         LFD+  +++  SW +MI GY R        
Sbjct: 261 ------------------------------LFDKNDKKNIVSWNSMIGGYAREEDVCRTF 290

Query: 144 DLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            L + MQ  +  + +++FT+ +VL        L+  KE+HGY  R G  S+E+V +A   
Sbjct: 291 YLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIA 350

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            Y +CG++  + ++FD M  + V SW A++  Y Q     +   L+ ++  SG+ P+ FT
Sbjct: 351 AYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFT 410

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L AC+   +   G+++HG+  R G     F   +L+ +Y  CG    ++ +F+GM 
Sbjct: 411 IGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGME 470

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              LVSW  +IAGY+QNG+PD+A+  F  +L  G QP  I  + V  AC+    +  G +
Sbjct: 471 HRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG-K 529

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H    K  LT      + I+D+ A+ G    ++ +  ++  K D   W  ++ G  IH
Sbjct: 530 ELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-DVASWNVIIAGYGIH 588

Query: 443 GNLDLAKRAAEALFE 457
           G     K A E LFE
Sbjct: 589 GR---GKEALE-LFE 599



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 191/374 (51%), Gaps = 15/374 (4%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKS-SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +++++    +N   E+   + S L S +  KP  F   C++   A   ++   Q +    
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 127

Query: 88  QERDVCS----YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            + D+ S     N +I+ + K G +E+A  +F+ MP+R+  SW ++I G+       E+ 
Sbjct: 128 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESF 187

Query: 144 DLYR-MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + +R M+   E+ V +  TL +VL   +  + +  G  +HG  ++ G + + +V ++L D
Sbjct: 188 NAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLID 247

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK--SGIRPNA 260
           MY KC  ++EA+ +FDK   +++VSW +MIG Y +E      F L  ++    + ++ + 
Sbjct: 248 MYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADE 307

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           FT   VL  C + +  +  K++HGY  R G       A+A +  Y++CG + +S++VF+ 
Sbjct: 308 FTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDL 367

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           M    + SW +L+ GYAQN  P KAL+ +  +  SG  PD      +L AC+        
Sbjct: 368 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR------- 420

Query: 381 LQYFHSIKEKHGLT 394
           ++  H  +E HG  
Sbjct: 421 MKSLHYGEEIHGFA 434



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 190/415 (45%), Gaps = 44/415 (10%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC-LLDMYAKCGNISDAQTLFDEMQER 90
           L+Q C Q + +E G+++H  + +S      F+ N  ++ MY+ CG+ SD+          
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDS---------- 53

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                                R +FD++ +++ F W A++S Y R     +A+ ++  + 
Sbjct: 54  ---------------------RMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +      + FTL  V+ A + +  L LG+ IHG   +    SD  V +AL  MYGKCG +
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI--KSGIRPNAFTFAGVLN 268
            EA ++F+ M +R++VSW ++I  + + G  +E F  F E++  +    P+  T   VL 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            CA     E G  VHG   ++G +      ++L+ MYSKC  +  ++ +F+   + ++VS
Sbjct: 213 VCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS 272

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQ-----PDHIVFVGVLTACTHAGLVDKGLQY 383
           W S+I GYA+    +     F LL K  T+      D    + VL  C     + + L+ 
Sbjct: 273 WNSMIGGYARE---EDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSEL-QSLKE 328

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            H    +HGL          +    R G    +E V   M  K     W +LL G
Sbjct: 329 LHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSS-WNALLCG 382


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 263/473 (55%), Gaps = 7/473 (1%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSH--LKSSGFKPGVFISNCL 67
           + + A ++L QI  PS  ++ SL+        L       S+  ++ +G  P       L
Sbjct: 51  QFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPL 110

Query: 68  LDMYAKCGNISDAQTLFDEMQ---ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           L    K  + +  Q     ++   + D+   N++ISG++  G  E    +FD    +D  
Sbjct: 111 LKAVFKLRDANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVV 170

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWTAMI G+VR +  +EA+  +  M+      +N+ T+ SVL A    + +R G+ IHG+
Sbjct: 171 SWTAMIDGFVRNDSSLEAMTYFVEMKR-SGVAANEMTVVSVLKATRKAEDVRFGRSIHGF 229

Query: 185 IMRTG-FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            +  G    D  + S+L DMYGKCG  ++A+++FD+M  R+VV+WTA+I  Y Q    E+
Sbjct: 230 YLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEK 289

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
           G  +F E++KS + PN  T + VL+ACA   A   G++VH Y+ +   +  +   + L+ 
Sbjct: 290 GMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLID 349

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
            Y+KCG +E +  VF  +   ++ +WT++I G+A +G    A++ F  +L S   P+ + 
Sbjct: 350 FYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVT 409

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ VL+AC H GLV++G + F S+KE+  L   ADHYAC+VDL  R G   EA+ +I +M
Sbjct: 410 FIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERM 469

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PM+P   +W +L G C IH + +L K AA  + +++P +   Y  +AN+Y+ +
Sbjct: 470 PMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSES 522


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/494 (32%), Positives = 273/494 (55%), Gaps = 37/494 (7%)

Query: 1   AIDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           AI       + KEA  +  Q+      P+    SS ++ C +      G  +H  ++  G
Sbjct: 76  AIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFG 135

Query: 57  FK---PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           F     G+++   L+D Y K G++  A+ +FDEM ER+V S+N+M++G+ K G L  A+ 
Sbjct: 136 FSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQR 195

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNFEN---SVSNKFTLSSVLSA 168
           +FDE+PQ+D  SW +MISGY R     +AL L++ M  +NF +    +S       + SA
Sbjct: 196 VFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSA 255

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
                             R+ FD+    + V W  +   Y KCG ++ A ++FD++  +D
Sbjct: 256 ------------------RSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKD 297

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPNAFTFAGVLNACADHAAEELGKQV 282
           ++ + AMI  Y Q  R +E   LF+ ++     ++P+  T A V++AC+       G  +
Sbjct: 298 LLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWI 357

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
             YM R+G +     A+AL+ +Y+KCG+++ + ++F+G+ + DLV++T++I G   NG  
Sbjct: 358 ESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKA 417

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
             A++ F+ ++ +   P+ I F+G+LTA  HAGLV++G   F S+K K+ L  + DHY  
Sbjct: 418 IDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMK-KYNLVPSVDHYGI 476

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           +VDL  R+GR  EA ++I  MPM+P   +W +LL  CR+H N++  + AA+  FE+EP+ 
Sbjct: 477 MVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDT 536

Query: 463 PATYVTMANIYASA 476
                 ++NIYAS 
Sbjct: 537 TGYCSLLSNIYASG 550



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 179/385 (46%), Gaps = 34/385 (8%)

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D+FSW   I    ++ Q  EA  LY  MQ +       F LSS L A + I     G  I
Sbjct: 69  DSFSWACAIRFSTQHGQFKEAFALYVQMQRW-GLWPTTFALSSALKACARIAYRMGGLSI 127

Query: 182 HGYIMRTGFD--SDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           HG + + GF    D + V +AL D Y K G +  AR++FD+M +R+VVSW +M+  Y + 
Sbjct: 128 HGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS 187

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ------------VHGYM 286
           G       +F E+ +  +       +G   A     A  L +Q            + GY+
Sbjct: 188 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYV 247

Query: 287 -------TRIGYDPY----SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
                   R  +D      + +   ++  YSKCG+V+++ ++F+ +   DL+ + ++IA 
Sbjct: 248 EFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIAC 307

Query: 336 YAQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           YAQN  P +AL+ F  +L      QPD +    V++AC+  G +  G  +  S   + G+
Sbjct: 308 YAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFG-PWIESYMRRLGI 366

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN-LDLAKRAA 452
                    ++DL A+ G   +A ++   +  K D   + +++ GC I+G  +D  K   
Sbjct: 367 EMDGHLATALLDLYAKCGSIDKAYELFHGL-RKKDLVAYTAMILGCGINGKAIDAIKLFD 425

Query: 453 EAL-FEIEPENPATYVTMANIYASA 476
           E +  +I P N  T++ +   Y  A
Sbjct: 426 EMVDAQIFP-NSITFIGLLTAYNHA 449


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 37/475 (7%)

Query: 7   NQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N  R  +AL +L  +     S+    ++S +  C      E+G+ +H  +  SG      
Sbjct: 322 NDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQI 381

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           I N L+ MY K G +S                               ++R +  +MP+RD
Sbjct: 382 IGNALVSMYGKIGEMS-------------------------------ESRRVLLQMPRRD 410

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA-VSAIQCLRLGKEI 181
             +W A+I GY     P +AL  ++ M+  E   SN  T+ SVLSA +     L  GK +
Sbjct: 411 VVAWNALIGGYAEDEDPDKALAAFQTMR-VEGVSSNYITVVSVLSACLLPGDLLERGKPL 469

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H YI+  GF+SDE V ++L  MY KCG ++ ++ +F+ + +R++++W AM+      G  
Sbjct: 470 HAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHG 529

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   L S++   G+  + F+F+  L+A A  A  E G+Q+HG   ++G++  SF  +A 
Sbjct: 530 EEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAA 589

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
             MYSKCG +    K+        L SW  LI+   ++G  ++    F  +L+ G +P H
Sbjct: 590 ADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGH 649

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           + FV +LTAC+H GLVDKGL Y+  I    GL    +H  C++DLL RSGR  EAE  IS
Sbjct: 650 VTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFIS 709

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           KMPMKP+  +W SLL  C+IHGNLD  ++AAE L ++EPE+ + YV  +N++A+ 
Sbjct: 710 KMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATT 764



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 203/416 (48%), Gaps = 35/416 (8%)

Query: 24  PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           PS  + +SL+  C R      EG +VH  +  SG    V++S  +L +Y   G +S    
Sbjct: 39  PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVS---- 94

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                     CS                 R +F+EMP R+  SWT+++ GY    +P E 
Sbjct: 95  ----------CS-----------------RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV 127

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +D+Y+ M+  E    N+ ++S V+S+   ++   LG++I G ++++G +S   V ++L  
Sbjct: 128 IDIYKGMRG-EGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLIS 186

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           M G  G+++ A  IFD+M +RD +SW ++   Y Q G  EE F +FS + +     N+ T
Sbjct: 187 MLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTT 246

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            + +L+       ++ G+ +HG + ++G+D      + L+ MY+  G    +  VF  MP
Sbjct: 247 VSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP 306

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL+SW SL+A +  +G    AL     ++ SG   +++ F   L AC      +KG +
Sbjct: 307 TKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-R 365

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             H +    GL Y       +V +  + G   E+  V+ +MP + D   W +L+GG
Sbjct: 366 ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 420



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 183/357 (51%), Gaps = 4/357 (1%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E  +   N++IS     G+++ A  +FD+M +RD  SW ++ + Y +     E+  ++ +
Sbjct: 175 ESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSL 234

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+ F + V N  T+S++LS +  +   + G+ IHG +++ GFDS   V + L  MY   G
Sbjct: 235 MRRFHDEV-NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 293

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
              EA  +F +M  +D++SW +++  +  +GR  +   L   +I SG   N  TF   L 
Sbjct: 294 RSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALA 353

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC      E G+ +HG +   G        +ALV MY K G +  S++V   MPR D+V+
Sbjct: 354 ACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVA 413

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSI 387
           W +LI GYA++  PDKAL  F+ +   G   ++I  V VL+AC   G L+++G +  H+ 
Sbjct: 414 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG-KPLHAY 472

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               G          ++ + A+ G    ++D+ + +  + +   W ++L     HG+
Sbjct: 473 IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGH 528



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 168/324 (51%), Gaps = 12/324 (3%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS-AIQCLR 176
           MP R+  SW  M+SG VR    +E ++ +R M +     S+ F ++S+++A   +    R
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSS-FVIASLVTACGRSGSMFR 59

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            G ++HG++ ++G  SD  V +A+  +YG  G ++ +R++F++M DR+VVSWT+++  Y 
Sbjct: 60  EGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
            +G  EE   ++  +   G+  N  + + V+++C     E LG+Q+ G + + G +    
Sbjct: 120 DKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLA 179

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             ++L+ M    GNV+ +  +F+ M   D +SW S+ A YAQNG  +++   F L+ +  
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 239

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SGR 412
            + +      +L+   H      G +  H +  K G     D   C+ + L R    +GR
Sbjct: 240 DEVNSTTVSTLLSVLGHVDHQKWG-RGIHGLVVKMGF----DSVVCVCNTLLRMYAGAGR 294

Query: 413 FHEAEDVISKMPMKPDKFLWASLL 436
             EA  V  +MP K D   W SL+
Sbjct: 295 SVEANLVFKQMPTK-DLISWNSLM 317


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 243/431 (56%), Gaps = 32/431 (7%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           +++H  +  SGF    F+ + L+D YAK G + +AQ+                       
Sbjct: 198 RQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSA---------------------- 235

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
                    FDE+  RD   W  M+S Y       +A  ++++M+  E    + FT +S+
Sbjct: 236 ---------FDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMR-LEGVKGDNFTFTSM 285

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           +++   +    LGK++HG I+R  FD D +V SAL DMY K  +I +AR+ FD M+ +++
Sbjct: 286 INSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNI 345

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSWT MI  Y Q G  +E   L  E+I+    P+    A +L++C + +A     QVH Y
Sbjct: 346 VSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAY 405

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           +   G++ +   A+ALV  YSKCG++ ++ + F+ +  PD++SWTSL+  YA +G+  + 
Sbjct: 406 VVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEG 465

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           +E FE +L S  +PD + F+GVL+AC H G V +GL YF+ +   + +   ++HY CI+D
Sbjct: 466 VEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIID 525

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
           LL R+G   EA ++++ MP++P      + LG C++H N+ LA+ A+E LF +EP  PA 
Sbjct: 526 LLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPAN 585

Query: 466 YVTMANIYASA 476
           Y  M+N+YAS 
Sbjct: 586 YSLMSNMYASV 596



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 213/427 (49%), Gaps = 56/427 (13%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  GK++H+H+   G    + + N +L +Y KC   +D   +FDEM  ++V S+NT+I G
Sbjct: 89  LHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICG 148

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
             +G                 N  +  +  G+  + Q +            E    N  T
Sbjct: 149 VVEG-----------------NCKFALVRLGFHYFRQMV-----------LEMMAPNCIT 180

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L+ +L A   +  + + +++H +I+++GFDS+  V SAL D Y K G ++EA+  FD++ 
Sbjct: 181 LNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVS 240

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            RD+V W  M+  Y   G + + F +F  +   G++ + FTF  ++N+C    +  LGKQ
Sbjct: 241 SRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQ 300

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VHG + R+ +D     ASALV MYSK  N+E+++K F+GM   ++VSWT++I GY Q+G 
Sbjct: 301 VHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGD 360

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTAC-----------THAGLVDKGLQYFHSIKEK 390
             +A+   + +++  T PD +    +L++C            HA +V+ G + F SI   
Sbjct: 361 GKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANA 420

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
                       +V   ++ G    A    S +  +PD   W SL+G    HG   L+K 
Sbjct: 421 ------------LVSAYSKCGSIGSAFQSFSSVA-EPDIISWTSLMGAYAFHG---LSKE 464

Query: 451 AAEALFE 457
             E +FE
Sbjct: 465 GVE-VFE 470



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 33/295 (11%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S+I  C    +   GK+VH  +    F   V +++ L+DMY+K  NI DA+  FD M 
Sbjct: 282 FTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMI 341

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            +++ S+ TMI G+ + G  ++A  L  EM +               Y  P         
Sbjct: 342 VKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIR--------------VYTYP--------- 378

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    ++  L+S+LS+   +       ++H Y++  GF++   + +AL   Y KCG
Sbjct: 379 ---------DELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCG 429

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SI  A Q F  + + D++SWT+++G Y   G  +EG  +F +++ S +RP+   F GVL+
Sbjct: 430 SIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLS 489

Query: 269 ACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           ACA       G      M  +    P S   + ++ +  + G ++ +  +   MP
Sbjct: 490 ACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMP 544



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++L ++    ++P     +S++  C    A  E  +VH+++  +GF+  + I+N L
Sbjct: 362 KEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANAL 421

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDN 123
           +  Y+KCG+I  A   F  + E D+ S+ +++  +   G  ++   +F++M     + D 
Sbjct: 422 VSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDK 481

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQN 151
            ++  ++S        +E L  + +M N
Sbjct: 482 VAFLGVLSACAHGGFVLEGLHYFNLMIN 509


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/508 (31%), Positives = 261/508 (51%), Gaps = 90/508 (17%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI------- 77
           S S ++S+ + C    AL  G ++H H   + F   V I    LDMY KC N+       
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 78  --------------------SDAQTLFDEMQ----------------------------- 88
                               SD     DE+                              
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLC 393

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + ++C  N ++  + K G+L +A  +F+EM  RD  SW A+I+ + +     + L L+  
Sbjct: 394 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF-- 451

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                                           IH  I+++    D  V  AL DMY KCG
Sbjct: 452 --------------------------------IHNRIIKSRLGLDSFVGIALIDMYSKCG 479

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +A ++ D++ ++ VVSW A+I  +  + + EE    FS++++ G+ P+ FT+A +L+
Sbjct: 480 MMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILD 539

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            CA+    ELGKQ+H  + +      ++ +S LV MYSKCGN+++ + +F   P  D V+
Sbjct: 540 TCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVT 599

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W +++ GYAQ+G+ ++AL+ FE +     +P+H  F+ VL AC H GLV+KGL YFHS+ 
Sbjct: 600 WNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSML 659

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             +GL    +HY+C+VD++ RSG+  +A ++I  MP + D  +W +LL  C+IHGN+++A
Sbjct: 660 SNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVA 719

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           ++AA ++ ++EPE+ A YV ++NIYA+A
Sbjct: 720 EKAAYSILQLEPEDSAAYVLLSNIYANA 747



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/426 (31%), Positives = 220/426 (51%), Gaps = 17/426 (3%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           +Q +      +S + Q C   +AL  GK+ H+ +  + FKP VF++NCL+ MY KC ++ 
Sbjct: 35  YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLE 94

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
            A  +FD M +RD  S+N M+ G+   G +  A+ LFD MP+RD  SW ++ISGY+    
Sbjct: 95  FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGD 154

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             + +D++  M     +V ++ T + VL + S+++    G +IHG  ++ GFD D V  S
Sbjct: 155 HRKVIDVFLQMGRM-GTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGS 213

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL DMY KC  ++ + Q F  M +++ VSW+A+I    Q      G  LF E+ K+G+  
Sbjct: 214 ALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGV 273

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           +  TFA V  +CA  +A  LG Q+HG+  +  +       +A + MY KC N+ +++K+F
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           N +P  +L S+ ++I GYA++   DK L             D +   G   AC       
Sbjct: 334 NSLPNHNLQSYNAIIVGYARS---DKGLGL-----------DEVSLSGAFRACAVIKGDL 379

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +GLQ  H +  K            I+D+  + G   EA  V  +M +  D   W +++  
Sbjct: 380 EGLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAA 437

Query: 439 CRIHGN 444
              +GN
Sbjct: 438 HEQNGN 443



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 133/306 (43%), Gaps = 34/306 (11%)

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +++ + + K T S +    S  + L  GK+ H  ++ T F     V + L  MY KC  +
Sbjct: 34  SYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDL 93

Query: 211 NEARQIFDKMVDRDVVSWTAMI----GR---------------------------YFQEG 239
             A ++FD M  RD VSW AM+    GR                           Y   G
Sbjct: 94  EFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNG 153

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              +   +F ++ + G   +  TFA VL +C+       G Q+HG   ++G+D      S
Sbjct: 154 DHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGS 213

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           AL+ MY+KC  ++ S + F+ MP  + VSW+++IAG  QN      LE F+ + K+G   
Sbjct: 214 ALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGV 273

Query: 360 DHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
               F  V  +C     +  G Q + H++K   G           +D+  +     +A+ 
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIG--TATLDMYMKCNNLSDAQK 331

Query: 419 VISKMP 424
           + + +P
Sbjct: 332 LFNSLP 337



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 34/211 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y++++  C     +E GK++H+ +     +   +IS+ L+DMY+KCGN+ D Q +
Sbjct: 529 PDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLI 588

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F++   RD  ++N M+ G+ + G  E+A  +F+ M                         
Sbjct: 589 FEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYM------------------------- 623

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-IHGYIMRTGFDSDEVVWSALSD 202
                    EN   N  T  +VL A   +  +  G    H  +   G D     +S + D
Sbjct: 624 -------QLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVD 676

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMI 232
           + G+ G +++A ++ + M  + D V W  ++
Sbjct: 677 IMGRSGQVSKALELIEGMPFEADAVIWRTLL 707


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 260/462 (56%), Gaps = 34/462 (7%)

Query: 16  QILHQ-ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           ++LHQ +  P+  I+ S+   C      E G+++H      G    VF    L DMYAKC
Sbjct: 255 EMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKC 314

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G +S              C                 AR +F ++ + D  +W A+I+G+ 
Sbjct: 315 GLLS--------------C-----------------ARVVFYQIGRPDLVAWNAIIAGFA 343

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                 EA+  +  M++ +  + ++ T+ S+L A ++   L  G ++HGYI + G D D 
Sbjct: 344 YGGDAKEAIAFFSQMRH-QGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDV 402

Query: 195 VVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
            V + L  MY KC  + +A   F++M  + D+VSW A++    +  + EE F L   +  
Sbjct: 403 PVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCI 462

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           S  RP+  T   VL A A+  + E+G QVH Y  + G +  +   + L+ +Y+KCG+++ 
Sbjct: 463 SQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKT 522

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           + K+F+ M  PD+VSW+SLI GYAQ G  ++AL+ F+ + +   +P+H+ FVGVLTAC+H
Sbjct: 523 AHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSH 582

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            GLV++G + + +++++ G+  T +H +C+VDLLAR+G  +EAE  I +M   PD  +W 
Sbjct: 583 VGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWK 642

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +LL  C+ HGN+D+ KRAAE + +I+P N A +V + NIYAS
Sbjct: 643 TLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYAS 684



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/482 (29%), Positives = 235/482 (48%), Gaps = 43/482 (8%)

Query: 2   IDILCNQRRLKEALQILHQISHPSP-----SIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           I  LC Q+   EA++    +   +      S Y+ LI  C   R+LE GKK+H H+  S 
Sbjct: 34  ITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSK 93

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
             P + + N +L+MY KC ++ DAQ                                +FD
Sbjct: 94  SHPDLTLQNHILNMYGKCKSLKDAQ-------------------------------KVFD 122

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
            MP+R+  SWT++I+GY +  Q   AL+ Y +M+Q+    + ++FT  S++ A S++  +
Sbjct: 123 AMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQS--GVMPDQFTFGSIIKACSSLGDI 180

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
            LG+++H +++++ F +  +  +AL  MY K   I +A  +F +M  RD++SW +MI  +
Sbjct: 181 GLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGF 240

Query: 236 FQEGRREEGFALFSELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
            Q G   E    F E++  G+  PN F F  V +AC+     E G+Q+HG   + G    
Sbjct: 241 SQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRD 300

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            FA  +L  MY+KCG +  ++ VF  + RPDLV+W ++IAG+A  G   +A+ +F  +  
Sbjct: 301 VFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRH 360

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
            G  PD I    +L ACT    + +G+Q  H    K GL         ++ + A+     
Sbjct: 361 QGLIPDEITVRSLLCACTSPSELYQGMQ-VHGYINKMGLDLDVPVCNTLLTMYAKCSELR 419

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +A     +M    D   W ++L  C  H   +   R  + L  I    P  Y+T+ N+  
Sbjct: 420 DAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLK-LMCISQHRP-DYITLTNVLG 477

Query: 475 SA 476
           ++
Sbjct: 478 AS 479



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 207/435 (47%), Gaps = 7/435 (1%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           + LK+A ++   +   +   ++S+I    QN       + +  +  SG  P  F    ++
Sbjct: 112 KSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSII 171

Query: 69  DMYAKCGNISDAQTLFDEMQERD----VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
              +  G+I   + L   + + +    + + N +IS +TK   +  A ++F  M  RD  
Sbjct: 172 KACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLI 231

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW +MI+G+ +    +EAL  ++ M +    + N+F   SV SA S++     G+++HG 
Sbjct: 232 SWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGM 291

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++ G   D     +L DMY KCG ++ AR +F ++   D+V+W A+I  +   G  +E 
Sbjct: 292 SIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEA 351

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
            A FS++   G+ P+  T   +L AC   +    G QVHGY+ ++G D      + L+ M
Sbjct: 352 IAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTM 411

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           Y+KC  + ++   F  M    DLVSW +++    ++   ++     +L+  S  +PD+I 
Sbjct: 412 YAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYIT 471

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
              VL A      ++ G Q  H    K GL         ++DL A+ G    A  +   M
Sbjct: 472 LTNVLGASAETVSIEIGNQ-VHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSM 530

Query: 424 PMKPDKFLWASLLGG 438
            + PD   W+SL+ G
Sbjct: 531 -INPDVVSWSSLILG 544



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 10/224 (4%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           ++E G +VH +   +G      ++N L+D+YAKCG++  A  +FD M   DV S++++I 
Sbjct: 484 SIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLIL 543

Query: 101 GFTKGGSLEQARNLFDEMPQRD----NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
           G+ + G  E+A  LF  M + D    + ++  +++         E   LY  M+      
Sbjct: 544 GYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIA 603

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
             +   S ++  ++   CL    E  G+I +  FD D VVW  L       G+++  ++ 
Sbjct: 604 PTREHCSCMVDLLARAGCL---NEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRA 660

Query: 217 FDKMVDRDVVSWTA---MIGRYFQEGRREEGFALFSELIKSGIR 257
            + ++  D  +  A   +   Y  +G  E+   L S + + G+R
Sbjct: 661 AENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVR 704


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 249/418 (59%), Gaps = 15/418 (3%)

Query: 67  LLDMYAKCGNISDAQ-----TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           +L + A+ G + +A+     T+  E+Q  DV   N +I+ ++K G +E AR +FD M +R
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQG-DVTLSNVLINAYSKCGFVELARQVFDGMLER 127

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV----SAIQCLRL 177
              SW  MI  Y R     EALD++  M+N E    ++FT+SSVLSA      A++C   
Sbjct: 128 SLVSWNTMIGLYTRNRMESEALDIFWEMRN-EGFKFSEFTISSVLSACGANCDALEC--- 183

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            K++H   M+T  D +  V +AL D+Y KCG IN+A Q+F+ M D+  V+W++M+  Y Q
Sbjct: 184 -KKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQ 242

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               EE   L+    +  +  N FT + V+ AC++ AA   GKQ+H  + + G+    F 
Sbjct: 243 SKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFV 302

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           AS+ V MY+KCG++  S  +F+ +   ++  W ++I+G+A++  P + +  FE + + G 
Sbjct: 303 ASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGM 362

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+ + F  +L+ C H GLV++G ++F  ++  +GL+    HY+C+VD+L R+G   EA 
Sbjct: 363 HPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAY 422

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           ++I  +P +P   +W SLL  CR+  NL+LA+ AA+ LFE+EPEN   +V ++NIYA+
Sbjct: 423 ELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAA 480



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 35/193 (18%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           SS+I  C    AL EGK++H+ ++ SGF   VF+++  +DMYAKCG++ ++  +F E+QE
Sbjct: 269 SSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 328

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           +++  +NT+ISGF K                               + +P E + L+  M
Sbjct: 329 KNIELWNTIISGFAK-------------------------------HARPKEVMILFEKM 357

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT--GFDSDEVVWSALSDMYGKC 207
           Q  +    N+ T SS+LS       +  G+     +MRT  G   + V +S + D+ G+ 
Sbjct: 358 QQ-DGMHPNEVTFSSLLSVCGHTGLVEEGRRFFK-LMRTTYGLSPNVVHYSCMVDILGRA 415

Query: 208 GSINEARQIFDKM 220
           G ++EA ++   +
Sbjct: 416 GLLSEAYELIKSI 428



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 2/179 (1%)

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           A  F  +L  CA + A    K  HG   R+        ++ L++ YSKCG VE +++VF+
Sbjct: 63  ASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFD 122

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           GM    LVSW ++I  Y +N M  +AL+ F  +   G +        VL+AC  A     
Sbjct: 123 GMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACG-ANCDAL 181

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             +  H +  K  L         ++DL A+ G  ++A  V   M  K     W+S++ G
Sbjct: 182 ECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSS-VTWSSMVAG 239



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 10/121 (8%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVFIS 64
           R KE + +  ++     HP+   +SSL+  C     +EEG++    ++++ G  P V   
Sbjct: 346 RPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHY 405

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSLE----QARNLFDEMP 119
           +C++D+  + G +S+A  L   +  E     + ++++      +LE     A+ LF+  P
Sbjct: 406 SCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEP 465

Query: 120 Q 120
           +
Sbjct: 466 E 466


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 250/461 (54%), Gaps = 34/461 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA-KC 74
           ++L     P+    SS+++ C+  +AL  G   HS     G    V++ N LLDMYA  C
Sbjct: 99  EMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASC 158

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
             + DA ++F+++                               P +   SWT +I+G+ 
Sbjct: 159 ATMDDALSVFNDI-------------------------------PLKTAVSWTTLIAGFT 187

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                   L  +R M   E+   N F+ S    A ++I     GK+IH  + + G   D 
Sbjct: 188 HRGDGYSGLLAFRQML-LEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDA 246

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +++ DMY +C  + +A++ F ++ ++++++W  +I  Y +     E  +LF ++   
Sbjct: 247 PVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSE 305

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G +PN FTF  +  ACA+ A    G+QVHG + R G+D      ++L+ MY+KCG++ +S
Sbjct: 306 GYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDS 365

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            K+F  MP  DLVSWT+++ GY  +G   +A++ F+ +++SG QPD IVF+GVL  C+HA
Sbjct: 366 HKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHA 425

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLVDKGL+YF S+ E + +    + Y C+VDLL R+GR  EA  ++  MP +PD+ +W +
Sbjct: 426 GLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGA 485

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LLG C+ +   +L   AA+ + +  P    TY+ ++ IYA+
Sbjct: 486 LLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAA 526



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 177/353 (50%), Gaps = 6/353 (1%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V + N + S F KG + E A NLF+E+P+RD  +WTAMI G+   N   +A  ++  M  
Sbjct: 44  VWATNLIKSYFDKGLTRE-ACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR 102

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY-GKCGSI 210
            E    N FT+SSVL A   ++ L  G   H    + G D    V +AL DMY   C ++
Sbjct: 103 SEVQ-PNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATM 161

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++A  +F+ +  +  VSWT +I  +   G    G   F +++   + PN+F+F+    AC
Sbjct: 162 DDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARAC 221

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  ++   GKQ+H  +T+ G    +   ++++ MY +C  + ++K+ F  +   +L++W 
Sbjct: 222 ASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWN 281

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +LIAGY ++    ++L  F  +   G +P+   F  +  AC +  ++  G Q  H    +
Sbjct: 282 TLIAGYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCG-QQVHGGIVR 339

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            G          ++D+ A+ G   ++  +   MP + D   W +++ G   HG
Sbjct: 340 RGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGR-DLVSWTTMMIGYGAHG 391


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 251/449 (55%), Gaps = 34/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L+  C ++R L  G+++H+ + ++G +  +F++N +L MY KCG + D         
Sbjct: 36  YLDLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMED--------- 86

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
                              L +A   F EM +R+  SW A+IS Y + ++  +A+ ++ R
Sbjct: 87  -------------------LSRA---FSEMKRRNIVSWNAVISAYAQNDRSSDAIVIFLR 124

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M+   +    +  T +SVL+A +  +  R  K +H   +  GF S  VV +AL +MY K 
Sbjct: 125 ML--LDGIQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKV 182

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           GSI+ ARQ+FD++  +DVVSW+ MI  Y Q G   E   +F  +   GI+ N  TF  V+
Sbjct: 183 GSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVV 242

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +AC   A     + +H  +   G +  +   +AL++MY KCG +  +KK+F+ +   D+V
Sbjct: 243 HACVLVARITDARTIHRRIIEAGLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVV 302

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            W++++  YA++G P  AL+ F L+ + G +P+ + FVGVL AC H G V +G  +F S+
Sbjct: 303 VWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASL 362

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
              H L  TA H  C++D+L R+G+  EAE  I++MP+K +   W+  LG CR +G+L+ 
Sbjct: 363 VRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLER 422

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            KRAAE +FE  P   A Y+T+A++Y  A
Sbjct: 423 GKRAAEKVFEFLPHCRAGYLTLASMYTDA 451


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/479 (33%), Positives = 270/479 (56%), Gaps = 11/479 (2%)

Query: 6   CNQRRLKEALQILHQISHP-SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           CNQ     AL I    +H  +   ++++I     N   EEG + +  +++ G  P  F  
Sbjct: 85  CNQMNF--ALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTF 142

Query: 65  NCLLDMYAKCGNISDAQ-TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            C +        I      LF    E DV   + +++ + K G +E A+  F+E+P RD 
Sbjct: 143 PCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDV 202

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
             W AM++GY +  Q    L+ +R M N E+ V ++FT++ VLS  + +  L  G+ IHG
Sbjct: 203 VLWNAMVNGYAQIGQFEMVLETFRRM-NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHG 261

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           + M+ G+DS   V ++L DMYGKC  I +A +IF+ M ++D+ SW +++  + Q G  + 
Sbjct: 262 FAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDG 321

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYS----FA 297
              L   ++ +GI+P+  T   VL AC+  AA   G+++HGYM  + +G D         
Sbjct: 322 TLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLL 381

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +A++ MY+KCG++ ++  VF  M   D+ SW  +I GY  +G  ++ALE F  + +   
Sbjct: 382 KNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQL 441

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD + FVGVL+AC+HAG V +G  +   +K K+ +  T +HY C++D+L R+G+  EA 
Sbjct: 442 KPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAY 501

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++   MP++ +  +W +LL  CR+H +  LA+ AA+ +FE+EPE+  +YV M+N+Y + 
Sbjct: 502 ELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAV 560



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 153/318 (48%), Gaps = 13/318 (4%)

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           +Q+F+    N  T  + L A +  + L  GKEIH Y++  GF +  +  ++L +MY KC 
Sbjct: 28  IQSFQQPY-NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCN 86

Query: 209 SINEARQIF-DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
            +N A  IF D   + +V ++ A+I  +   G  EEGF  + ++   G+ P+ FTF   +
Sbjct: 87  QMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAI 146

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC D    E+ K++HG + + G +   F  SALV+ Y K G +E+++  F  +P  D+V
Sbjct: 147 KACLD--VLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVV 203

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            W +++ GYAQ G  +  LE F  +      P      GVL+     G ++ G +  H  
Sbjct: 204 LWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG-RIIHGF 262

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG---GCRIH-G 443
             K G          ++D+  +     +A ++   M  K D F W S++     C  H G
Sbjct: 263 AMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHDG 321

Query: 444 NLDLAKRAAEALFEIEPE 461
            L L  R   A   I+P+
Sbjct: 322 TLRLLDRMLGA--GIQPD 337


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 37/475 (7%)

Query: 7   NQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N  R  +AL +L  +     S+    ++S +  C      E+G+ +H  +  SG      
Sbjct: 429 NDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQI 488

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           I N L+ MY K G +S                               ++R +  +MP+RD
Sbjct: 489 IGNALVSMYGKIGEMS-------------------------------ESRRVLLQMPRRD 517

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA-VSAIQCLRLGKEI 181
             +W A+I GY     P +AL  ++ M+  E   SN  T+ SVLSA +     L  GK +
Sbjct: 518 VVAWNALIGGYAEDEDPDKALAAFQTMR-VEGVSSNYITVVSVLSACLLPGDLLERGKPL 576

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H YI+  GF+SDE V ++L  MY KCG ++ ++ +F+ + +R++++W AM+      G  
Sbjct: 577 HAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHG 636

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   L S++   G+  + F+F+  L+A A  A  E G+Q+HG   ++G++  SF  +A 
Sbjct: 637 EEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAA 696

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
             MYSKCG +    K+        L SW  LI+   ++G  ++    F  +L+ G +P H
Sbjct: 697 ADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGH 756

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           + FV +LTAC+H GLVDKGL Y+  I    GL    +H  C++DLL RSGR  EAE  IS
Sbjct: 757 VTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFIS 816

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           KMPMKP+  +W SLL  C+IHGNLD  ++AAE L ++EPE+ + YV  +N++A+ 
Sbjct: 817 KMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATT 871



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 222/468 (47%), Gaps = 50/468 (10%)

Query: 24  PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           PS  + +SL+  C R      EG +VH  +  SG    V++S  +L +Y   G +S ++ 
Sbjct: 171 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 230

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQ-------------------------------- 110
           +F+EM +R+V S+ +++ G++  G  E+                                
Sbjct: 231 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENS 290

Query: 111 -------------ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
                        A  +FD+M +RD  SW ++ + Y +     E+  ++ +M+ F + V 
Sbjct: 291 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV- 349

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N  T+S++LS +  +   + G+ IHG +++ GFDS   V + L  MY   G   EA  +F
Sbjct: 350 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVF 409

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            +M  +D++SW +++  +  +GR  +   L   +I SG   N  TF   L AC      E
Sbjct: 410 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 469

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+ +HG +   G        +ALV MY K G +  S++V   MPR D+V+W +LI GYA
Sbjct: 470 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 529

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKEKHGLTYT 396
           ++  PDKAL  F+ +   G   ++I  V VL+AC   G L+++G +  H+     G    
Sbjct: 530 EDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG-KPLHAYIVSAGFESD 588

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
                 ++ + A+ G    ++D+ + +  + +   W ++L     HG+
Sbjct: 589 EHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGH 635



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 176/350 (50%), Gaps = 37/350 (10%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V   NT+I+ +TK G ++ AR+LFD MP R+  SW  M+SG VR    +E ++ +R M +
Sbjct: 107 VLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCD 166

Query: 152 FENSVSNKFTLSSVLSAVS-AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                S+ F ++S+++A   +    R G ++HG++ ++G  SD  V +A+  +YG  G +
Sbjct: 167 LGIKPSS-FVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLV 225

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + +R++F++M DR+VVSWT+++  Y  +G  EE   ++ +                    
Sbjct: 226 SCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKD-------------------- 265

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
                E LG+Q+ G + + G +      ++L+ M    GNV+ +  +F+ M   D +SW 
Sbjct: 266 -----ESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWN 320

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+ A YAQNG  +++   F L+ +   + +      +L+   H      G +  H +  K
Sbjct: 321 SIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWG-RGIHGLVVK 379

Query: 391 HGLTYTADHYACIVDLLAR----SGRFHEAEDVISKMPMKPDKFLWASLL 436
            G     D   C+ + L R    +GR  EA  V  +MP K D   W SL+
Sbjct: 380 MGF----DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLM 424



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 128/265 (48%), Gaps = 16/265 (6%)

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           S I     G+ +H   ++       +  + L +MY K G +  AR +FD M  R+ VSW 
Sbjct: 83  SQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWN 142

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE-ELGKQVHGYMTR 288
            M+    + G   EG   F ++   GI+P++F  A ++ AC    +    G QVHG++ +
Sbjct: 143 TMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 202

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G     + ++A++H+Y   G V  S+KVF  MP  ++VSWTSL+ GY+  G P++ ++ 
Sbjct: 203 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 262

Query: 349 FE----------LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           ++           ++KSG +    V   +++     G VD     F  + E+  +++ + 
Sbjct: 263 YKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNS- 321

Query: 399 HYACIVDLLARSGRFHEAEDVISKM 423
               I    A++G   E+  + S M
Sbjct: 322 ----IAAAYAQNGHIEESFRIFSLM 342



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
           E  G+ VH    +          + L++MY+K G V+ ++ +F+ MP  + VSW ++++G
Sbjct: 88  ETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSG 147

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKEKHGLT 394
             + G+  + +E+F  +   G +P   V   ++TAC  +G +  +G+Q  H    K GL 
Sbjct: 148 IVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ-VHGFVAKSGLL 206

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                   I+ L    G    +  V  +MP + +   W SL+ G
Sbjct: 207 SDVYVSTAILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVG 249


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 247/460 (53%), Gaps = 32/460 (6%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
            +L   + P+ S Y   ++       LE GK++HSH   SG      ++  + +MY KCG
Sbjct: 101 NMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCG 160

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                                           LE A  +F++M +++  +WT ++ GY +
Sbjct: 161 -------------------------------WLEGAELVFEKMSEKNAVAWTGIMVGYTQ 189

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
             + ++AL L+  M N E    +++  S VL A + ++ L  G++IHG+I++ G +S+  
Sbjct: 190 AERQMDALALFAKMVN-EGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVS 248

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V + L D Y KC ++  A + F+ + + + VSW+A+I  Y Q G  EE    F  L    
Sbjct: 249 VGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRS 308

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           +  N+FT+  +  AC+  A    G Q H    +     Y    SA++ MYS+CG ++ + 
Sbjct: 309 VDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYAT 368

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           +VF  +  PD V+WT++IAGYA  G   +AL+ F  +   G +P+ + F+ VLTAC+H+G
Sbjct: 369 RVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSG 428

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           LV +G QY  S+   +G+  T DHY C+VD+ +R+G   EA ++I  MP  PD   W  L
Sbjct: 429 LVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCL 488

Query: 436 LGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LGGC  + NL++ + AAE LF+++PE+ A Y+ M N+YAS
Sbjct: 489 LGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYAS 528



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 214/420 (50%), Gaps = 34/420 (8%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           SP  Y  L + C + ++L +G+  H  ++ +   P  F+ N +L MY KCG+++DA+ +F
Sbjct: 9   SPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVF 68

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
           DEM+ER++ S+NT+IS + + G  ++   +F  M + +     +   G++R         
Sbjct: 69  DEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLR--------- 119

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
                              S+L+       L +GK+IH + +R+G  S+  V +A+S+MY
Sbjct: 120 -------------------SLLNPSG----LEIGKQIHSHAIRSGLGSNASVNTAISNMY 156

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            KCG +  A  +F+KM +++ V+WT ++  Y Q  R+ +  ALF++++  G+  + + F+
Sbjct: 157 VKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFS 216

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            VL ACA       G+Q+HG++ ++G +      + LV  Y KC N+E++ K F  +  P
Sbjct: 217 IVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEP 276

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           + VSW++LI GY Q G  ++AL+ FE L       +   +  +  AC+     + G Q  
Sbjct: 277 NDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQA- 335

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           H+   K  L       + ++ + +R GR   A  V   +   PD   W +++ G    GN
Sbjct: 336 HADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESID-DPDAVAWTAIIAGYAYQGN 394



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 146/291 (50%), Gaps = 2/291 (0%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           +  A   I+ L  G+  H  + RT  +  E + +++  MY KCGS+ +AR++FD+M +R+
Sbjct: 16  LFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERN 75

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
           +VSW  +I  Y + G  ++GF +FS +++   +PN  T+ G L +  + +  E+GKQ+H 
Sbjct: 76  LVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHS 135

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           +  R G    +   +A+ +MY KCG +E ++ VF  M   + V+WT ++ GY Q      
Sbjct: 136 HAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMD 195

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           AL  F  ++  G + D  VF  VL AC     ++ G Q  H    K GL         +V
Sbjct: 196 ALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQ-IHGHIVKLGLESEVSVGTPLV 254

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           D   +      A      +  +P+   W++L+ G    G  + A +  E+L
Sbjct: 255 DFYVKCSNLESATKAFEWIS-EPNDVSWSALITGYCQMGEFEEALKTFESL 304



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 2/185 (1%)

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           +GI  +  ++  +  AC    +   G+  H  M R   +P  F  ++++ MY KCG++ +
Sbjct: 4   AGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLAD 63

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++KVF+ M   +LVSW ++I+ YA+NG+ DK    F  +L+  T+P+   ++G L +  +
Sbjct: 64  ARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLN 123

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
              ++ G Q  HS   + GL   A     I ++  + G    AE V  KM  K +   W 
Sbjct: 124 PSGLEIGKQ-IHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEK-NAVAWT 181

Query: 434 SLLGG 438
            ++ G
Sbjct: 182 GIMVG 186


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 248/450 (55%), Gaps = 14/450 (3%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +++ C     ++ GK +H+    +G    V I   L+ MYAKCGN+ D++ +FD M ER+
Sbjct: 100 VLKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERN 159

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
             ++N MI G+   G  + A  LF++M  R   +W  MI G+ R      A    R   +
Sbjct: 160 AVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETA---RRFFDD 216

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEI-HGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             + + N  T + ++   +    +   +E+  G   R  F      WS++   Y K G++
Sbjct: 217 VPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFF-----AWSSMISGYCKKGNV 271

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EAR IFD++  R++V+W ++I  Y Q G  EE    F ++   G  P+  T A VL+AC
Sbjct: 272 KEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSAC 331

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +     + GK++H  M   G     F  + LV MY+KCG++ N++ +F GM   +   W 
Sbjct: 332 SQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWN 391

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+I+G+A +G   +ALE+F  +  S   PD I F+ VL+AC H G V+ GL+ F  + EK
Sbjct: 392 SMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM-EK 450

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +GLT    HY C++DLL R+GR  EA D+I +MP+KP+  +W +LLG CR+H ++++A R
Sbjct: 451 YGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADR 510

Query: 451 AAEALFEIEPENPAT----YVTMANIYASA 476
             E + +++    +     YV ++NIYA++
Sbjct: 511 VVEEIVKVDSNISSGCDSHYVLLSNIYAAS 540



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 37/227 (16%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL+   ++      P     +S++  C Q   L+ GKK+H  +   G K   F+ N L
Sbjct: 303 EEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGL 362

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG++++A+ +F+ M  R+   +N+MISGF   G                     
Sbjct: 363 VDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHG--------------------- 401

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                     Q  EAL+ +  M++      ++ T  SVLSA +    +  G EI   + +
Sbjct: 402 ----------QSKEALEFFGRMEDSHEG-PDEITFLSVLSACAHGGFVNAGLEIFSRMEK 450

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            G  +    +  L D+ G+ G I EA  +  +M V  + V W A++G
Sbjct: 451 YGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLG 497



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 16/162 (9%)

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG----VLTACTHAG 375
           G   P L +W  LI  Y   G P +A     LL+ +G +   +  +G    VL AC    
Sbjct: 54  GKGTPSLSNWCHLIRSYLSQGAPREA-----LLVYTGLRRKGVYLLGVAPLVLKACASLS 108

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           +V  G +  H+   K+G+ +       +V + A+ G   ++  V   MP + +   W ++
Sbjct: 109 IVKHG-KALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPER-NAVTWNAM 166

Query: 436 LGGCRIHGNLDLAKRAAEALFE-IEPENPATYVTMANIYASA 476
           +  C   GN D   ++A  LFE +      T++ M + +A +
Sbjct: 167 I--CGYLGNGD--SKSAVLLFEKMSIRTAVTWIEMIDGFARS 204


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 250/461 (54%), Gaps = 34/461 (7%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA-KC 74
           ++L     P+    SS+++ C+  +AL  G   HS     G    V++ N LLDMYA  C
Sbjct: 99  EMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASC 158

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
             + DA ++F+++                               P +   SWT +I+G+ 
Sbjct: 159 ATMDDALSVFNDI-------------------------------PLKTAVSWTTLIAGFT 187

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                   L  +R M   E+   N F+ S    A ++I     GK+IH  + + G   D 
Sbjct: 188 HRGDGYSGLLAFRQML-LEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDA 246

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +++ DMY +C  + +A++ F ++ ++++++W  +I  Y +     E  +LF ++   
Sbjct: 247 PVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSE 305

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G +PN FTF  +  ACA+ A    G+QVHG + R G+D      ++L+ MY+KCG++ +S
Sbjct: 306 GYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDS 365

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
            K+F  MP  DLVSWT+++ GY  +G   +A++ F+ +++SG QPD IVF+GVL  C+HA
Sbjct: 366 HKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHA 425

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLVDKGL+YF S+ E + +    + Y C+VDLL R+GR  EA  ++  MP +PD+ +W +
Sbjct: 426 GLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGA 485

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           LLG C+ +   +L   AA+ + +  P    TY+ ++ IYA+
Sbjct: 486 LLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAA 526



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 177/353 (50%), Gaps = 6/353 (1%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V + N + S F KG + E A NLF+E+P+RD  +WTAMI G+   N   +A  ++  M  
Sbjct: 44  VWATNLIKSYFDKGLTRE-ACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR 102

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY-GKCGSI 210
            E    N FT+SSVL A   ++ L  G   H    + G D    V +AL DMY   C ++
Sbjct: 103 SEVQ-PNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATM 161

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++A  +F+ +  +  VSWT +I  +   G    G   F +++   + PN+F+F+    AC
Sbjct: 162 DDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARAC 221

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A  ++   GKQ+H  +T+ G    +   ++++ MY +C  + ++K+ F  +   +L++W 
Sbjct: 222 ASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWN 281

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +LIAGY ++    ++L  F  +   G +P+   F  +  AC +  ++  G Q  H    +
Sbjct: 282 TLIAGYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCG-QQVHGGIVR 339

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            G          ++D+ A+ G   ++  +   MP + D   W +++ G   HG
Sbjct: 340 RGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGR-DLVSWTTMMIGYGAHG 391


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 269/475 (56%), Gaps = 11/475 (2%)

Query: 10  RLKEALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           ++ EA+ + +   H      Y+++I     N    +G + +  ++  G  P  +   C++
Sbjct: 61  QMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVV 120

Query: 69  DMYAKCGNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
               +   +        +M  E DV   + +++ + K GS+E A+ +F E+  RD   W 
Sbjct: 121 RTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWN 180

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AMI+GY +     EAL+++R M   +    ++FT++ +LS  ++   L  GK +HG +M+
Sbjct: 181 AMINGYAKIGCLDEALEVFRRMH-VKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMK 239

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G+DS   V +AL DMYGKC  I +A  IF+ + ++D+ SW ++I  + Q G  +    L
Sbjct: 240 MGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRL 299

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYSFA------AS 299
           F +++ SGI P+  T   VL AC+  AA   G+++HGYM    +G D  + A      ++
Sbjct: 300 FDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSN 359

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           A++ MY+KCG++ N+ K+F+ M + D+ SW  +I GY  +G   +AL  F  + ++  +P
Sbjct: 360 AVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKP 419

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           + +  VGVL+AC HAG V  G  +   ++   G+  T +HY C++D+L R+G   +A ++
Sbjct: 420 NEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEI 479

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           + KMP++ +  +W +LLG CR+HGN +LA+ AA  + ++EPE+  +YV M+N+Y 
Sbjct: 480 VQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYG 534



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 6/265 (2%)

Query: 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF-DKMVDRDVVSWTAM 231
           Q L  GK++H  ++  GF       ++L +MY KCG + EA  +F D   +R+V ++ A+
Sbjct: 25  QNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAI 84

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  +   G   +GF  + ++   G+ P+ +TF  V+  C +    E+ K++HG + ++G 
Sbjct: 85  ISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCE--VMEV-KKIHGCLLKMGL 141

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
           +   F  SALV+ Y K G++E+++KVF  +   D+V W ++I GYA+ G  D+ALE F  
Sbjct: 142 ELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRR 201

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +   G  P      G+L+     G +D G +  H I  K G          ++D+  +  
Sbjct: 202 MHVKGVAPSRFTITGILSVFASRGDLDNG-KTVHGIVMKMGYDSGVSVSNALIDMYGKCK 260

Query: 412 RFHEAEDVISKMPMKPDKFLWASLL 436
              +A  +I +M  + D F W S++
Sbjct: 261 HIGDAL-IIFEMINEKDIFSWNSII 284



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 6/191 (3%)

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N       L +CADH     GKQ+H  M   G+ P   + ++L++MYSKCG +  +  VF
Sbjct: 10  NVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVF 69

Query: 319 -NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
            +     ++ ++ ++I+G+  NG+  K  ++++ +   G  PD   F  V+  C     V
Sbjct: 70  YDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV 129

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            K     H    K GL       + +V+   ++G   +A+ V  ++ ++ D  LW +++ 
Sbjct: 130 KK----IHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR-DVVLWNAMIN 184

Query: 438 GCRIHGNLDLA 448
           G    G LD A
Sbjct: 185 GYAKIGCLDEA 195


>gi|326513920|dbj|BAJ92110.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 503

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 264/473 (55%), Gaps = 5/473 (1%)

Query: 5   LCNQRRLKEALQ-ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           LC+  RLK+AL      +    P++++ + + CR   A+    ++H+   +SG     F 
Sbjct: 23  LCSSGRLKDALHHPFRDVLWSDPNLFAHVFRACR---AIPLLHQLHAFAATSGAAADRFT 79

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +N L+  YA  G++  A  LF+ + + +V S+N +I G+ K   L  AR LFDEMP R+ 
Sbjct: 80  TNNLMLAYADLGDLPTACRLFERIPKPNVMSWNILIGGYIKNSHLGSARKLFDEMPTRNV 139

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W AM++G        + L  +  M+  E    ++F L SV    + +  L  G+++H 
Sbjct: 140 ATWNAMVAGLTNAGLDEDGLGFFLAMRR-EGLHPDEFGLGSVFRCCAGLSDLVSGRQVHA 198

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R G D D  V ++L+ MY +CG + E   +   +    VVS+   I    Q G  E 
Sbjct: 199 YVVRCGMDIDMCVGNSLAHMYMRCGCLAEGEAVLKALPSLTVVSFNTTIAGRTQLGDSEG 258

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
               FS +   G+  +  TF  V++ C+D AA   G+QVH  + + G D      + LVH
Sbjct: 259 ALEYFSMMRGVGLVADVVTFVSVISCCSDLAALAQGQQVHAQVIKAGVDKVIPVITCLVH 318

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MYS+CG + +S++V++G    DL   +++I+    +G   KA+E F+ ++ +G +P+ + 
Sbjct: 319 MYSRCGCLGDSERVYSGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNAGARPNEVT 378

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ +L AC+H+GL ++GL++F  + + +GL  +  HY CIVDLL RSG   EAE +I  M
Sbjct: 379 FLALLYACSHSGLKEEGLEFFELMTKAYGLQPSVKHYTCIVDLLGRSGCLDEAEALILSM 438

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P++ D  +W +LL  C+   N D+A+R AE + E +P++ A YV ++NI A++
Sbjct: 439 PVRADGVIWKTLLSACKTQKNFDMAERIAERVIEFDPQDSAPYVLLSNIRATS 491


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 255/451 (56%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  I +  I  C     +EEG++ H  L  +GF    ++ N L+ MY+KC  + DA  +
Sbjct: 131 PNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGV 190

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           ++E+   D+ +YN+++S   +                          +GY+R     E L
Sbjct: 191 WNEVPVNDIVAYNSILSSLVE--------------------------NGYLR-----EGL 219

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           ++ R M + E+   +K T  +  S  ++++ LRLG  +HG ++ +  + D  V SA+ +M
Sbjct: 220 EVLRSMVS-ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINM 278

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG    AR +FD +  R+VV WTA++   FQ G  EE   LFS++ +  ++ N FT+
Sbjct: 279 YGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTY 338

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A +LNACA  +A   G  +HG+  + G+  +    +AL++MY+K G++E +KKVF+ M  
Sbjct: 339 AVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMH 398

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+++W ++I G++ +G+  KAL  F+ +L +   P+++ F GVL+AC H GLV +G  Y
Sbjct: 399 RDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYY 458

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H + ++ G+    +HY CIV LL+++G+ +EA + +   P+K D   W +LL  C +H 
Sbjct: 459 LHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQ 518

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           N  L +  AE + E++P +  TY  ++NIYA
Sbjct: 519 NYGLGRWVAEFVLEMDPNDVGTYTLLSNIYA 549



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 212/457 (46%), Gaps = 37/457 (8%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           +S  SP     L++     + L+ GK +HSHL                            
Sbjct: 24  VSPSSPLDLIKLLKLSADTKNLKVGKTIHSHL---------------------------- 55

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
             +     E  +   N++I+ + K   +  A NLFD MP+R+  SW+A+++GY+     +
Sbjct: 56  -IVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSL 114

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           + + L + M +  N   N++ L+  +S+      +  G++ HG +++TGF     V +AL
Sbjct: 115 KVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNAL 174

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MY KC  + +A  +++++   D+V++ +++    + G   EG  +   ++   ++ + 
Sbjct: 175 VSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDK 234

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            TF    + CA      LG  VHG M     +  ++ +SA+++MY KCG    ++ VF+G
Sbjct: 235 VTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDG 294

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL-VDK 379
           +   ++V WT+++A   QNG  ++AL  F  + +   + +   +  +L AC  AGL   +
Sbjct: 295 LQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNAC--AGLSARR 352

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
                H   EK G  +       ++++ A+SG    A+ V S M M  D   W +++ G 
Sbjct: 353 NGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDM-MHRDIITWNAMICGF 411

Query: 440 RIHGNLDLAKRAAEALFE-IEPENPATYVTMANIYAS 475
             HG   L K+A     + +  E    YVT   + ++
Sbjct: 412 SHHG---LGKKALLVFQDMLAAEEHPNYVTFTGVLSA 445


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/410 (35%), Positives = 241/410 (58%), Gaps = 2/410 (0%)

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MY+K G+   A  ++  M++++  S N +I+G+ + G L  AR +FDEMP R   +W 
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           AMI+G +++    E L L+R M     S  +++TL SV S  + ++ + +G++IHGY ++
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK 119

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G + D VV S+L+ MY + G + +   +   M  R++V+W  +I    Q G  E    L
Sbjct: 120 YGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYL 179

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           +  +  SG RPN  TF  VL++C+D A    G+Q+H    +IG        S+L+ MYSK
Sbjct: 180 YKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSK 239

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVG 366
           CG + ++ K F+     D V W+S+I+ Y  +G  D+A+E F  +  ++  + + + F+ 
Sbjct: 240 CGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLN 299

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC+H+GL DKGL+ F  + EK+G      HY C+VDLL R+G   +AE +I  MP+K
Sbjct: 300 LLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIK 359

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            D  +W +LL  C IH N ++A+R  + + +I+P + A YV +AN++ASA
Sbjct: 360 TDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASA 409



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 146/318 (45%), Gaps = 35/318 (11%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           R++  G+++H +    G +  + +++ L  MY + G + D + +   M  R++ ++NT+I
Sbjct: 105 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
            G  + G                                P   L LY+MM+       NK
Sbjct: 165 MGNAQNGC-------------------------------PETVLYLYKMMK-ISGCRPNK 192

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T  +VLS+ S +     G++IH   ++ G  S   V S+L  MY KCG + +A + F +
Sbjct: 193 ITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE 252

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEEL 278
             D D V W++MI  Y   G+ +E   LF+ +  ++ +  N   F  +L AC+    ++ 
Sbjct: 253 REDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDK 312

Query: 279 GKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGY 336
           G ++   M  + G+ P     + +V +  + G ++ ++ +   MP + D+V W +L++  
Sbjct: 313 GLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSAC 372

Query: 337 AQNGMPDKALEYFELLLK 354
             +   + A   F+ +L+
Sbjct: 373 NIHKNAEMAQRVFKEILQ 390



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 35/238 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + +++  C       +G+++H+     G    V + + L+ MY+KCG + DA   
Sbjct: 190 PNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKA 249

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F E ++ D   +++MIS +   G  ++A  LF+ M ++ N                    
Sbjct: 250 FSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNME------------------ 291

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSD 202
                         N+    ++L A S       G E+   ++ + GF      ++ + D
Sbjct: 292 -------------INEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVD 338

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           + G+ G +++A  I   M +  D+V W  ++         E    +F E+++  I PN
Sbjct: 339 LLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--IDPN 394


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 37/475 (7%)

Query: 7   NQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N  R  +AL +L  +     S+    ++S +  C      E+G+ +H  +  SG      
Sbjct: 339 NDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQI 398

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           I N L+ MY K G +S                               ++R +  +MP+RD
Sbjct: 399 IGNALVSMYGKIGEMS-------------------------------ESRRVLLQMPRRD 427

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA-VSAIQCLRLGKEI 181
             +W A+I GY     P +AL  ++ M+  E   SN  T+ SVLSA +     L  GK +
Sbjct: 428 VVAWNALIGGYAEDEDPDKALAAFQTMR-VEGVSSNYITVVSVLSACLLPGDLLERGKPL 486

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H YI+  GF+SDE V ++L  MY KCG ++ ++ +F+ + +R++++W AM+      G  
Sbjct: 487 HAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHG 546

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   L S++   G+  + F+F+  L+A A  A  E G+Q+HG   ++G++  SF  +A 
Sbjct: 547 EEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAA 606

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
             MYSKCG +    K+        L SW  LI+   ++G  ++    F  +L+ G +P H
Sbjct: 607 ADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGH 666

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           + FV +LTAC+H GLVDKGL Y+  I    GL    +H  C++DLL RSGR  EAE  IS
Sbjct: 667 VTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFIS 726

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           KMPMKP+  +W SLL  C+IHGNLD  ++AAE L ++EPE+ + YV  +N++A+ 
Sbjct: 727 KMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATT 781



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 203/416 (48%), Gaps = 35/416 (8%)

Query: 24  PSPSIYSSLIQFC-RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           PS  + +SL+  C R      EG +VH  +  SG    V++S  +L +Y   G +S    
Sbjct: 56  PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVS---- 111

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                     CS                 R +F+EMP R+  SWT+++ GY    +P E 
Sbjct: 112 ----------CS-----------------RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV 144

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +D+Y+ M+  E    N+ ++S V+S+   ++   LG++I G ++++G +S   V ++L  
Sbjct: 145 IDIYKGMRG-EGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLIS 203

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           M G  G+++ A  IFD+M +RD +SW ++   Y Q G  EE F +FS + +     N+ T
Sbjct: 204 MLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTT 263

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            + +L+       ++ G+ +HG + ++G+D      + L+ MY+  G    +  VF  MP
Sbjct: 264 VSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP 323

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL+SW SL+A +  +G    AL     ++ SG   +++ F   L AC      +KG +
Sbjct: 324 TKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-R 382

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             H +    GL Y       +V +  + G   E+  V+ +MP + D   W +L+GG
Sbjct: 383 ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 437



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 183/357 (51%), Gaps = 4/357 (1%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E  +   N++IS     G+++ A  +FD+M +RD  SW ++ + Y +     E+  ++ +
Sbjct: 192 ESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSL 251

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+ F + V N  T+S++LS +  +   + G+ IHG +++ GFDS   V + L  MY   G
Sbjct: 252 MRRFHDEV-NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 310

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
              EA  +F +M  +D++SW +++  +  +GR  +   L   +I SG   N  TF   L 
Sbjct: 311 RSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALA 370

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC      E G+ +HG +   G        +ALV MY K G +  S++V   MPR D+V+
Sbjct: 371 ACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVA 430

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSI 387
           W +LI GYA++  PDKAL  F+ +   G   ++I  V VL+AC   G L+++G +  H+ 
Sbjct: 431 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG-KPLHAY 489

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               G          ++ + A+ G    ++D+ + +  + +   W ++L     HG+
Sbjct: 490 IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGH 545



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 180/340 (52%), Gaps = 12/340 (3%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           +TK G ++ AR+LFD MP R+  SW  M+SG VR    +E ++ +R M +     S+ F 
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSS-FV 60

Query: 162 LSSVLSAVS-AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           ++S+++A   +    R G ++HG++ ++G  SD  V +A+  +YG  G ++ +R++F++M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            DR+VVSWT+++  Y  +G  EE   ++  +   G+  N  + + V+++C     E LG+
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+ G + + G +      ++L+ M    GNV+ +  +F+ M   D +SW S+ A YAQNG
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             +++   F L+ +   + +      +L+   H      G +  H +  K G     D  
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWG-RGIHGLVVKMGF----DSV 295

Query: 401 ACIVDLLAR----SGRFHEAEDVISKMPMKPDKFLWASLL 436
            C+ + L R    +GR  EA  V  +MP K D   W SL+
Sbjct: 296 VCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLM 334



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 3/267 (1%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY K G +  AR +FD M  R+ VSW  M+    + G   EG   F ++   GI+P++F 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 263 FAGVLNACADHAAE-ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
            A ++ AC    +    G QVHG++ + G     + ++A++H+Y   G V  S+KVF  M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P  ++VSWTSL+ GY+  G P++ ++ ++ +   G   +      V+++C        G 
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           Q    +  K GL         ++ +L   G    A  +  +M  + D   W S+      
Sbjct: 181 QIIGQVV-KSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSER-DTISWNSIAAAYAQ 238

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVT 468
           +G+++ + R    +     E  +T V+
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVS 265


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/509 (33%), Positives = 281/509 (55%), Gaps = 48/509 (9%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           RL  A +    IS P+   ++++I  + +++R L     +   L     +P +   N L+
Sbjct: 58  RLAWARKAFQDISDPNVFSFNAIIAAYAKESRPL-----IAHQLFDQIPEPDLVSYNTLI 112

Query: 69  DMYAKCGNISDAQTLFDEMQERD------------------------------------- 91
             YA CG  + A  LF  M+E                                       
Sbjct: 113 SAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSY 172

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           V   N +++ + K G L+ A+ +F  M   RD  SW +MI  Y ++ +  +AL L++ M 
Sbjct: 173 VSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMV 232

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS- 209
               +V + FTL+SVL+A + ++ L  G + HG +++TGF  +  V S L D+Y KCG  
Sbjct: 233 RRGLNV-DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGG 291

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQ-EGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +++ R++F+++ + D+V W  M+  Y Q E   E+    F ++   G RPN  +F  V++
Sbjct: 292 MSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVIS 351

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAA-SALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           AC++ ++   GKQ+H    +        +  +AL+ MYSKCGN+++++++F+ M   + V
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTV 411

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           S  S+IAGYAQ+G+  ++L  F+ +L+    P  I F+ VL+AC H G V++G  YF+ +
Sbjct: 412 SLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMM 471

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           KEK  +   A+HY+C++DLL R+G+  EAE++I++MP  P    WASLLG CR HGN++L
Sbjct: 472 KEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIEL 531

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
           A +AA  + ++EP N A YV ++N+YASA
Sbjct: 532 AVKAANQVLQLEPSNAAPYVVLSNMYASA 560



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 210/403 (52%), Gaps = 16/403 (3%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +  L++ C   R L  GK +HS    S   P  + SN  + +Y+KCG ++ A+  F ++ 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + +V S+N +I+ + K      A  LFD++P+ D  S+  +IS Y    +   AL L+  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLG--KEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           M+     + + FTLS+V++A     C  +G   ++H   + +GFDS   V +AL   YGK
Sbjct: 131 MREMGLDM-DGFTLSAVITAC----CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 207 CGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
            G +++A+++F  M   RD VSW +MI  Y Q     +   LF E+++ G+  + FT A 
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-GNVENSKKVFNGMPRP 324
           VL A         G Q HG + + G+   S   S L+ +YSKC G + + +KVF  +  P
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 325 DLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           DLV W ++++GY+QN    + ALE F  +   G +P+   FV V++AC++     +G Q 
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ- 364

Query: 384 FHSIKEKHGLT---YTADHYACIVDLLARSGRFHEAEDVISKM 423
            HS+  K  +     + D+   ++ + ++ G   +A  +  +M
Sbjct: 365 IHSLALKSDIPSNRISVDN--ALIAMYSKCGNLQDARRLFDRM 405


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 282/515 (54%), Gaps = 60/515 (11%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           RL  A +    IS P+   ++++I  + +++R L     +   L     +P +   N L+
Sbjct: 58  RLAWARKAFQDISDPNVFSFNAIIAAYAKESRPL-----IAHQLFDQIPEPDLVSYNTLI 112

Query: 69  DMYAKCGNISDAQTLFDEMQERD------------------------------------- 91
             YA CG  + A  LF  M+E                                       
Sbjct: 113 SAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSY 172

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           V   N +++ + K G L+ A+ +F  M   RD  SW +MI  Y ++ +  +AL L++ M 
Sbjct: 173 VSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMV 232

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS- 209
               +V + FTL+SVL+A + ++ L  G + HG +++TGF  +  V S L D+Y KCG  
Sbjct: 233 RRGLNV-DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGG 291

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQ-EGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           +++ R++F+++ + D+V W  M+  Y Q E   E+    F ++   G RPN  +F  V++
Sbjct: 292 MSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVIS 351

Query: 269 ACADHAAEELGKQVHGYM-------TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           AC++ ++   GKQ+H           RI  D      +AL+ MYSKCGN+++++++F+ M
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVD------NALIAMYSKCGNLQDARRLFDRM 405

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              + VS  S+IAGYAQ+G+  ++L  F+ +L+    P  I F+ VL+AC H G V++G 
Sbjct: 406 AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGW 465

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
            YF+ +KEK  +   A+HY+C++DLL R+G+  EAE++I++MP  P    WASLLG CR 
Sbjct: 466 NYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRT 525

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGN++LA +AA  + ++EP N A YV ++N+YASA
Sbjct: 526 HGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASA 560



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 210/403 (52%), Gaps = 16/403 (3%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +  L++ C   R L  GK +HS    S   P  + SN  + +Y+KCG ++ A+  F ++ 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + +V S+N +I+ + K      A  LFD++P+ D  S+  +IS Y    +   AL L+  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLG--KEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           M+     + + FTLS+V++A     C  +G   ++H   + +GFDS   V +AL   YGK
Sbjct: 131 MREMGLDM-DXFTLSAVITAC----CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 207 CGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
            G +++A+++F  M   RD VSW +MI  Y Q     +   LF E+++ G+  + FT A 
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-GNVENSKKVFNGMPRP 324
           VL A         G Q HG + + G+   S   S L+ +YSKC G + + +KVF  +  P
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 325 DLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           DLV W ++++GY+QN    + ALE F  +   G +P+   FV V++AC++     +G Q 
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ- 364

Query: 384 FHSIKEKHGLT---YTADHYACIVDLLARSGRFHEAEDVISKM 423
            HS+  K  +     + D+   ++ + ++ G   +A  +  +M
Sbjct: 365 IHSLALKSDIPSNRISVDN--ALIAMYSKCGNLQDARRLFDRM 405


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 261/482 (54%), Gaps = 9/482 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG- 60
           ID+     R  +AL + H I   +   ++ ++    +NR  +        +   G  PG 
Sbjct: 17  IDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGE 76

Query: 61  ----VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
               +F+S C        G       L   ++E  +     ++S + K G    A ++F 
Sbjct: 77  VGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQ-TALVSLYGKLGHCTDAASVFL 135

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
            M  RD  +W+AM++ Y R   P EAL L+R M + +    NK TL S L A +++  LR
Sbjct: 136 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQM-DLDGVAPNKVTLVSGLDACASLGDLR 194

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            G  +H  +   G  S  VV +AL ++YGKCG I  A + F ++V+++VV+W+A+   Y 
Sbjct: 195 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYA 254

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG--YDPY 294
           +  R  +   +   +   G+ PN+ TF  VL+ACA  AA + G+++H  +  +G   +  
Sbjct: 255 RNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESD 314

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            +  +ALV+MYSKCGN+  +  +F+ +   DLV W SLIA  AQ+G  +KALE FE +  
Sbjct: 315 VYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 374

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
            G QP  I F  VL AC+HAG++D+G ++F S    HG+   A+H+ C+VDLL R+G   
Sbjct: 375 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 434

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           ++ED++  MP +P    W + LG CR + N+D A  AAE LF+++P   A YV ++N+YA
Sbjct: 435 DSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYA 494

Query: 475 SA 476
            A
Sbjct: 495 KA 496



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 187/423 (44%), Gaps = 38/423 (8%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111
           ++  G+    F+ N L+D+Y KC    DA  +F  +Q ++V                   
Sbjct: 1   MEELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNV------------------- 41

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
                       FSWT M++ +   N+  +   L+      +     +  +S  LSA + 
Sbjct: 42  ------------FSWTMMLAAFAE-NRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTD 88

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
            + + +G+ I   I+ TG + + +V +AL  +YGK G   +A  +F +M  RDVV+W+AM
Sbjct: 89  AREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAM 148

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +  Y + G   E   LF ++   G+ PN  T    L+ACA       G  +H  +   G 
Sbjct: 149 VAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGI 208

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                  +ALV++Y KCG +E + + F  +   ++V+W+++ A YA+N     A+     
Sbjct: 209 QSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHR 268

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLAR 409
           +   G  P+   FV VL AC     + +G +  H      G    +D Y    +V++ ++
Sbjct: 269 MDLEGLAPNSTTFVSVLDACAAIAALKQG-RRIHERIHVLGGGLESDVYVLTALVNMYSK 327

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
            G    A ++  K+    D  LW SL+     HG  + A    E +  +E   P T +T 
Sbjct: 328 CGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFERM-RLEGLQP-TIITF 384

Query: 470 ANI 472
            ++
Sbjct: 385 TSV 387



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G+  +  + + L D+Y KC   ++A  +F  +  ++V SWT M+  + +    +  +  F
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             ++  GI P     +  L+AC D     +G+ +   +   G +  S   +ALV +Y K 
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+  ++  VF  M   D+V+W++++A YA+NG P +AL  F  +   G  P+ +  V  L
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC   G +  G    H   E  G+         +V+L  + GR   A +   ++ ++ +
Sbjct: 185 DACASLGDLRSG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKN 242

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPATYVTMANIYAS 475
              W+++      +   D  + A   L  ++ E    N  T+V++ +  A+
Sbjct: 243 VVAWSAISAA---YARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAA 290


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 256/455 (56%), Gaps = 34/455 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +S+ ++ C     +E G ++H     SGF+    + N  +DMY+KCG I      
Sbjct: 103 PNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIG----- 157

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                      A  +F++MP R+  SW AMI+G+       ++L
Sbjct: 158 --------------------------MAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSL 191

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF--DSDEVVWSALS 201
            L++ MQ  +  V ++FT +S L A  A+  +R G +IH  ++  GF      ++ SA+ 
Sbjct: 192 VLFQRMQG-QGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIV 250

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y KCG + EA+++FD++  ++++SW+A+I  + QEG   E   LF +L +S    + F
Sbjct: 251 DLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGF 310

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             + ++   AD A  E GKQ+H Y+ ++        A++++ MY KCG  E ++++F+ M
Sbjct: 311 VLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEM 370

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              ++VSWT +I GY ++G+ +KA+  F  +   G + D + ++ +L+AC+H+GL+ +  
Sbjct: 371 QVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQ 430

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           +YF  +   H +    +HYAC+VD+L R+G+  EA+++I  M +KP++ +W +LL  CR+
Sbjct: 431 EYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRV 490

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           HGNL++ +   E LF ++ +NP  YV M+NIYA A
Sbjct: 491 HGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEA 525



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 212/418 (50%), Gaps = 40/418 (9%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           + L++ C +N   ++G +VH+   + GF   + ++N L+DMY KC  +  A         
Sbjct: 8   AKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLA--------- 58

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
              CS                   +FD M +R+  SWTA++ GY++      +L L   M
Sbjct: 59  ---CS-------------------VFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEM 96

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
             +     N+FT S+ L A  A+  +  G +IHG  +++GF+   VV +A  DMY KCG 
Sbjct: 97  -GYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGR 155

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I  A Q+F+KM  R++VSW AMI  +  EG   +   LF  +   G  P+ FTF   L A
Sbjct: 156 IGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKA 215

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYS---FAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           C    A   G Q+H  +   G+ P S     ASA+V +Y+KCG +  ++KVF+ + + +L
Sbjct: 216 CGALGAIRGGTQIHASLITRGF-PISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNL 274

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFH 385
           +SW++LI G+AQ G   +A++ F  L +S +  D  V   ++       LV++G Q + +
Sbjct: 275 ISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCY 334

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +K   GL  +  +   I+D+  + G   EAE + S+M ++ +   W  ++ G   HG
Sbjct: 335 ILKVPSGLDISVAN--SIIDMYLKCGLTEEAERLFSEMQVR-NVVSWTVMITGYGKHG 389



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 166/310 (53%), Gaps = 8/310 (2%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           +S +  L+ +L   S       G ++H   +  GF  D ++ + L DMYGKC  ++ A  
Sbjct: 1   MSERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACS 60

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD+M++R+VVSWTA++  Y QEG  +   AL  E+  SG++PN FTF+  L AC     
Sbjct: 61  VFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGV 120

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            E G Q+HG   + G++  S   +A + MYSKCG +  +++VFN MP  +LVSW ++IAG
Sbjct: 121 VENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAG 180

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           +   G   K+L  F+ +   G  PD   F   L AC   G +  G Q   S+  + G   
Sbjct: 181 HTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITR-GFPI 239

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL----DLAK 449
           +  +   + IVDL A+ G   EA+ V  ++  K +   W++L+ G    GNL    DL +
Sbjct: 240 SIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK-NLISWSALIQGFAQEGNLLEAMDLFR 298

Query: 450 RAAEALFEIE 459
           +  E++  ++
Sbjct: 299 QLRESVSNVD 308



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 113/246 (45%), Gaps = 41/246 (16%)

Query: 11  LKEALQILHQ----ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L EA+ +  Q    +S+    + S ++        +E+GK++H ++        + ++N 
Sbjct: 290 LLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANS 349

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRD 122
           ++DMY KCG   +A+ LF EMQ R+V S+  MI+G+ K G  E+A +LF+ M     + D
Sbjct: 350 IIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELD 409

Query: 123 NFSWTAMI-----SGYVRYNQP---------------------IEALDLYRMMQNFENSV 156
             ++ A++     SG +R +Q                      ++ L     ++  +N +
Sbjct: 410 EVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLI 469

Query: 157 S------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                  N+    ++LSA      L +G+E+   + R   D + V +  +S++Y + G  
Sbjct: 470 ENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTD-NPVNYVMMSNIYAEAGYW 528

Query: 211 NEARQI 216
            E  ++
Sbjct: 529 KECERV 534


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 247/453 (54%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P      S++  C   +AL   ++VH+     GF   V +S  +LD+Y KCG        
Sbjct: 325 PDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCG-------- 376

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  +++ AR +FD M  R++ SW AMI GY       EAL
Sbjct: 377 -----------------------AVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEAL 413

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L++ M      V++   L++ L A   +  L  G+ +H  ++R G +S+  V +AL  M
Sbjct: 414 ALFKRMVGEGVDVTDVSVLAA-LHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITM 472

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC   + A Q+FD++  +  VSW AMI    Q G  E+   LFS +    ++P++FT 
Sbjct: 473 YCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTL 532

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             ++ A AD +     + +HGY  R+  D   +  +AL+ MY+KCG V  ++ +FN    
Sbjct: 533 VSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARD 592

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             +++W ++I GY  +G    A+E FE +  SG  P+   F+ VL+AC+HAGLVD+G +Y
Sbjct: 593 RHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEY 652

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+KE +GL    +HY  +VDLL R+G+ HEA   I KMPM+P   ++ ++LG C++H 
Sbjct: 653 FSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHK 712

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++LA+ +A+ +FE+EPE    +V +ANIYA+A
Sbjct: 713 NVELAEESAQRIFELEPEEGVYHVLLANIYANA 745



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 198/438 (45%), Gaps = 41/438 (9%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           S P    ++SL++ C     L  G+ VH+ L + G  P    +  L +MYAKC    DA 
Sbjct: 221 SGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA- 279

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                         R +FD MP RD  +W A+++GY R      
Sbjct: 280 ------------------------------RRVFDRMPARDRVAWNALVAGYARNGLAEA 309

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+ +   MQ  +    +  TL SVL A +  Q L   +E+H + +R GFD    V +A+ 
Sbjct: 310 AVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAIL 369

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D+Y KCG+++ AR++FD M DR+ VSW AMI  Y + G   E  ALF  ++  G+     
Sbjct: 370 DVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDV 429

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           +    L+AC +    + G++VH  + RIG +      +AL+ MY KC   + + +VF+ +
Sbjct: 430 SVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDEL 489

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
                VSW ++I G  QNG  + A+  F  +     +PD    V ++ A      +   L
Sbjct: 490 GYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALAD---ISDPL 546

Query: 382 Q--YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           Q  + H    +  L         ++D+ A+ GR   A  + +    +     W +++ G 
Sbjct: 547 QARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDR-HVITWNAMIHGY 605

Query: 440 RIHGNLDLAKRAAEALFE 457
             HG+     + A  LFE
Sbjct: 606 GSHGS----GKVAVELFE 619



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 108/269 (40%), Gaps = 69/269 (25%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-- 59
           I + C  +R   A Q+  ++ + +   ++++I  C QN + E+  ++ S ++    KP  
Sbjct: 470 ITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDS 529

Query: 60  ---------------------------------GVFISNCLLDMYAKCGNISDAQTLFDE 86
                                             V++   L+DMYAKCG +S A++LF+ 
Sbjct: 530 FTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS 589

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
            ++R V ++N MI G+   GS + A  LF+EM                            
Sbjct: 590 ARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKS-------------------------- 623

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSDMYG 205
                    V N+ T  SVLSA S    +  G+E    +    G +     +  + D+ G
Sbjct: 624 ------SGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLG 677

Query: 206 KCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           + G ++EA     KM ++  +  + AM+G
Sbjct: 678 RAGKLHEAWSFIQKMPMEPGISVYGAMLG 706


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 259/451 (57%), Gaps = 34/451 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S Y  L++ C  ++AL EGK+VHS L   G+     I+N L++MY KCG I+        
Sbjct: 25  STYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIA-------- 76

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR--DNFSWTAMISGYVRYNQPIEALD 144
                                  +AR++FD++ ++  D  SW  +I  Y +     EAL 
Sbjct: 77  -----------------------EARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALH 113

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L++ M + E  ++N+ TL + + A +++     G+ +H   +    +SD +V ++L +M+
Sbjct: 114 LFKTM-DLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMF 172

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
           GKC +++ AR +FD +  +++V+W  M+  Y Q  + ++   +F  +   G++P+A TF 
Sbjct: 173 GKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFL 232

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            +++ACA  AA   G+ VH  +T  G        +A++H Y KCG ++N++ +F+ + + 
Sbjct: 233 TIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKK 292

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           + V+W++++A YAQNG   +A+E +  +++ G + + I F+G+L AC+HAG    G+ YF
Sbjct: 293 NTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYF 352

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            S+    G+    +HY  ++DLL RSG+   +ED+I+ MP +PD   W +LLG CR+HG+
Sbjct: 353 VSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGD 412

Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +D   R AE ++E++PE+   Y+ ++N+Y+S
Sbjct: 413 VDRGARIAELIYELDPEDSGPYILLSNLYSS 443



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 19/201 (9%)

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W+A  G    + RREE                  T+  +L  CAD  A   GK+VH  + 
Sbjct: 8   WSAANGNRTVDERREE----------------ISTYVLLLKKCADSKALLEGKRVHSCLV 51

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM--PRPDLVSWTSLIAGYAQNGMPDKA 345
           + GY      A+ L+ MY KCG +  ++ VF+ +     D++SW  +I  Y QNG+  +A
Sbjct: 52  KDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEA 111

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L  F+ +   G   + +  +  + AC      ++G +  H+I     L         +V+
Sbjct: 112 LHLFKTMDLEGVIANQVTLINAIDACASLPSEEEG-RIVHAIAVDKRLESDTMVGTSLVN 170

Query: 406 LLARSGRFHEAEDVISKMPMK 426
           +  +      A  V   +P K
Sbjct: 171 MFGKCKNVDAARAVFDSLPRK 191



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           K+A+Q+   +      P    + ++I  C    A  EG+ VH  + +SG    V +   +
Sbjct: 210 KKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAV 269

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +  Y KCG + +A+ +FD + +++  +++ +++ + + G   +A  L+ EM Q
Sbjct: 270 MHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQ 322


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/507 (32%), Positives = 269/507 (53%), Gaps = 43/507 (8%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNCL 67
           R L   ++IL+ + +P+   ++++I+ C ++   ++G  ++   L  +G +P  +  + L
Sbjct: 101 RNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFL 160

Query: 68  LDMYAKCGNISDAQTLFDEMQE-------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
              +  C N+  +   F+ + +       +D+  YN +I      G    A  +FDE   
Sbjct: 161 ---FKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCV 217

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           RD  SW ++I+GYVR  QP EA+ +Y+ M   E+   ++ T+  V+SA + ++ L+LG+E
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQMIT-EHVKPDEVTMIGVVSACAQLESLKLGRE 276

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT----------- 229
           IH YI  +G +    + +AL DMY KCG +   + +FD M  + VVSWT           
Sbjct: 277 IHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGL 336

Query: 230 --------------------AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
                               AMIG   Q     E   LF E+  S ++P+  T    L+A
Sbjct: 337 LDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSA 396

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+   A + G   H Y+ +          +AL+ MY+KCGN+  + +VFN MPR + ++W
Sbjct: 397 CSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTW 456

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T++I G A  G  + A+ YF  ++ SG  PD I F+GVLTAC H GLV++G +YF  +K 
Sbjct: 457 TAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKS 516

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +  L+    HY+C+V+LL R+G   EAE++I  MPM+ D  +W +L   C IH NL + +
Sbjct: 517 RFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGE 576

Query: 450 RAAEALFEIEPENPATYVTMANIYASA 476
           RAA  L +++P +   YV +AN+Y  A
Sbjct: 577 RAASKLLDLDPHDSGIYVLLANMYREA 603



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 182/331 (54%), Gaps = 7/331 (2%)

Query: 8   QRRLKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           +R+ +EA+ I  Q+      P       ++  C Q  +L+ G+++H +++ SG    + +
Sbjct: 233 RRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISL 292

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            N L+DMY KCG++   + LFD M+++ V S+ TMI G+ K G L+ A  LF +MP+++ 
Sbjct: 293 VNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNV 352

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W AMI   V+ N   EAL+L+R MQ + N   +K T+   LSA S +  L  G   H 
Sbjct: 353 VAWNAMIGSCVQANLSFEALELFREMQ-WSNMKPDKVTMLHCLSACSQLGALDTGMWTHN 411

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           YI +     D  + +AL DMY KCG++ +A Q+F++M  R+ ++WTA+IG     G   +
Sbjct: 412 YIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVND 471

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALV 302
               FS++I SG+ P+  TF GVL AC      E G++    M +R    P     S +V
Sbjct: 472 AIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMV 531

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSL 332
           ++  + G +E ++++   MP   D + W +L
Sbjct: 532 NLLGRAGLLEEAEELIKTMPMEADAMVWGAL 562



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 206/421 (48%), Gaps = 39/421 (9%)

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL------FD 116
           +SN LL +   C + S  + +  +M    +       S      ++ ++RNL       +
Sbjct: 52  LSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILN 111

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
            +   + FSW A+I G V    P + L LY+ M        + +T S +    + +    
Sbjct: 112 NLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSY 171

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           +G EI G +++ GFD D  +++ +  M    G    A ++FD+   RD+VSW ++I  Y 
Sbjct: 172 MGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYV 231

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           +  +  E   ++ ++I   ++P+  T  GV++ACA   + +LG+++H Y+   G +    
Sbjct: 232 RRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKIS 291

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG-----------MPDK- 344
             +AL+ MY KCG++E  K +F+ M +  +VSWT++I GYA+NG           MP+K 
Sbjct: 292 LVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKN 351

Query: 345 -------------------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
                              ALE F  +  S  +PD +  +  L+AC+  G +D G+ + H
Sbjct: 352 VVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGM-WTH 410

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           +  +KH L+        ++D+ A+ G   +A  V ++MP + +   W +++GG  ++GN+
Sbjct: 411 NYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP-RRNSLTWTAIIGGLALYGNV 469

Query: 446 D 446
           +
Sbjct: 470 N 470



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 152/315 (48%), Gaps = 18/315 (5%)

Query: 155 SVSNKFTLSS-VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           + ++ + LS+ +LS +   +     K+I   ++ TG   D     A S +   C +I+E+
Sbjct: 45  NTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGF---ASSRLISFC-AISES 100

Query: 214 R------QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGV 266
           R      +I + + + +V SW A+I    +    ++G  L+  ++ ++G RP+ +T++ +
Sbjct: 101 RNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFL 160

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
              CA+     +G ++ G + ++G+D   +  + ++HM    G    + KVF+     DL
Sbjct: 161 FKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDL 220

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VSW SLI GY +   P +A+  ++ ++    +PD +  +GV++AC     +  G +  H 
Sbjct: 221 VSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGRE-IHR 279

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
             E+ GL         ++D+  + G   EA  V+     K     W +++ G   +G LD
Sbjct: 280 YIEESGLNLKISLVNALMDMYVKCGDL-EAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLD 338

Query: 447 LAKRAAEALFEIEPE 461
           +A +    LF   PE
Sbjct: 339 MAGK----LFHDMPE 349


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/433 (37%), Positives = 246/433 (56%), Gaps = 39/433 (9%)

Query: 49  HSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL 108
           H+++  SGF    F +N L++ Y +    +DA  LF+EM+E +V S+ ++++GF K G  
Sbjct: 50  HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109

Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
           + A  +F +M +    SW                             + N FT ++V++A
Sbjct: 110 KSALLIFCKMLE----SWV----------------------------LPNAFTFATVVNA 137

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
            S +  LR G++IH ++   G   + VV S+L DMYGKC ++++AR++FD M  R+VVSW
Sbjct: 138 CSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSW 197

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGI---RPNAFTFAGVLNACADHAAEELGKQVHGY 285
           T+MI  Y Q    E    LF E   +G+    PN F  A V+NACA       GK  H  
Sbjct: 198 TSMITAYGQNALGECALQLFREF--NGLPLSSPNHFMLASVINACASLGRLVSGKVAHAA 255

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           + R G++     ASALV MY+KCG +  S KVF  +P P ++ +TS+I G A+ G+   +
Sbjct: 256 VIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFS 315

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           L+ F+ +L    +P+ + FVGVL AC+H+GLVD GL+Y HS+ +KHG+     HY C+VD
Sbjct: 316 LDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVD 375

Query: 406 LLARSGRFHEAEDVISKMPMKPDK--FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +L R+GR  EA  +   + ++PD+   LW +LL   R++G +D+A  A++ L E   +  
Sbjct: 376 MLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVA 435

Query: 464 ATYVTMANIYASA 476
           A YVTM+N YA A
Sbjct: 436 AAYVTMSNTYAMA 448



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 168/339 (49%), Gaps = 35/339 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +++++  C     L  G+K+HSH++  G +  + + + L+DMY KC N+ DA+ +
Sbjct: 126 PNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRV 185

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  R+V S+ +MI+ +         +N   E                        AL
Sbjct: 186 FDGMDYRNVVSWTSMITAY--------GQNALGEC-----------------------AL 214

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+R       S  N F L+SV++A +++  L  GK  H  ++R G +S++VV SAL DM
Sbjct: 215 QLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDM 274

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG I  + ++F ++ D  V+ +T+MI    + G  +    +F E++   I+PN  TF
Sbjct: 275 YAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTF 334

Query: 264 AGVLNACADHAAEELGKQ-VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM- 321
            GVL+AC+     + G + +H    + G  P +   + +V M  + G ++ + ++   + 
Sbjct: 335 VGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQ 394

Query: 322 --PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
             P    + W +L++     G  D A+E  + L++S  Q
Sbjct: 395 VEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQ 433



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 41/250 (16%)

Query: 14  ALQILHQ-----ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           ALQ+  +     +S P+  + +S+I  C     L  GK  H+ +   G +    +++ L+
Sbjct: 213 ALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALV 272

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKCG I  +  +F  + +  V  Y +MI G  K G  + + ++F EM  R       
Sbjct: 273 DMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRR------ 326

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE-IHGYIMR 187
                    +P                  N  T   VL A S    +  G E +H    +
Sbjct: 327 --------IKP------------------NDVTFVGVLHACSHSGLVDDGLEYLHSMHKK 360

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM---VDRDVVSWTAMIGRYFQEGRREEG 244
            G   D   ++ + DM G+ G ++EA Q+   +    D+  + W  ++      GR +  
Sbjct: 361 HGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIA 420

Query: 245 FALFSELIKS 254
                 LI+S
Sbjct: 421 VEASKWLIES 430


>gi|357119036|ref|XP_003561252.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71490-like [Brachypodium distachyon]
          Length = 692

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 255/457 (55%), Gaps = 5/457 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+++ C +   L  G+ VH H  ++G    +F  N L+ MYAK G++  A+ +
Sbjct: 160 PDAFTYPSVLRACAEAGDLALGRAVHLHGLATGVGGHLFFQNALVSMYAKSGDLVAARKV 219

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQP 139
           F+ M ++DV S+N+MIS +   G   QA  LF+ M     + ++ +W  +   Y+     
Sbjct: 220 FEGMAQKDVVSWNSMISAYVAVGQWVQAVELFERMRAEEAEVNSVTWNTIAGVYINTRDH 279

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             A+ L R M + + +  +  TL    +A S +  LRLGKEIHG  +R   D  E V +A
Sbjct: 280 RAAVGLIREMVS-DGAAVDFVTLVIGSNACSRVGWLRLGKEIHGLAVRMNCDGVESVANA 338

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY +C  ++ A  +F  +    VV+W  MI  +      EE   L  E++ +G++PN
Sbjct: 339 LITMYARCKHMDSACLLFKMLACPGVVTWNTMIASFALSDEAEEASRLVHEMVGAGVQPN 398

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T   +L  CA  A  + G+++H ++ + G+  Y    ++L+ MYSK G +  ++ VF+
Sbjct: 399 YVTVVTLLALCARVANLQHGQELHSHIVKNGFKGYRLLWNSLIDMYSKSGXLSVAQNVFD 458

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D++S+T +IAGY   G    AL  F+ ++ SG +PDHI  V VL+AC+H+GLV +
Sbjct: 459 TMDDRDMISYTXMIAGYGMQGKGTIALRLFDQMIDSGIKPDHISMVTVLSACSHSGLVTE 518

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G + F  +   +G+    +HY+C+VDL ARSG   +AE ++++    P   +WA+L+G C
Sbjct: 519 GEKLFDKMTSSYGIKPQMEHYSCMVDLYARSGLLEKAEGMLNESSSPPTSMMWAALVGAC 578

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              GN+ + +RAA  L E++ EN   YV +AN+YA+A
Sbjct: 579 HDRGNIIIGERAARRLLEMKTENAGHYVLIANMYAAA 615



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 70/125 (56%)

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           + +  +I    + G      A + ++ +S + P+AFT+  VL ACA+     LG+ VH +
Sbjct: 128 LPYNILISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHLH 187

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
               G   + F  +ALV MY+K G++  ++KVF GM + D+VSW S+I+ Y   G   +A
Sbjct: 188 GLATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQA 247

Query: 346 LEYFE 350
           +E FE
Sbjct: 248 VELFE 252



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           LI+   ++G P  AL  ++ + +S   PD   +  VL AC  AG +  G +  H     H
Sbjct: 133 LISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALG-RAVH----LH 187

Query: 392 GL-TYTADHY---ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           GL T    H      +V + A+SG    A  V   M  K D   W S++      G    
Sbjct: 188 GLATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQK-DVVSWNSMISAYVAVGQWVQ 246

Query: 448 AKRAAEALFEIEPE-NPATYVTMANIY 473
           A    E +   E E N  T+ T+A +Y
Sbjct: 247 AVELFERMRAEEAEVNSVTWNTIAGVY 273


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 252/443 (56%), Gaps = 32/443 (7%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           ++ C   R ++ G+++H+H+   GF   ++++N L  MY +CG + D             
Sbjct: 205 LKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGL----------- 253

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                                LF+ M +RD   WT++I+ Y+R  Q  +A++ + +M+N 
Sbjct: 254 --------------------RLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNS 293

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           + S  N+ T +S  +A +++  L  G+++HG +   G      V +++  MY  C  ++ 
Sbjct: 294 QVS-PNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDS 352

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A  +F  M  RD++SW+ +IG Y Q    EE F  FS + ++G +P  F  A +L+    
Sbjct: 353 ASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGI 412

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
            A  E G+QVH     +G +      SAL++MYSKCG++  + KVF    R D+VS T++
Sbjct: 413 MAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAM 472

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I GYA++G  ++A++ FE  LK   +PD + F+ VLTAC+H+G +D G QYF+ ++E + 
Sbjct: 473 INGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENYN 532

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           +    +HY C+VDLL R+GR ++AE +I++MP K D  +W +LL  C+  G+++  +RAA
Sbjct: 533 MRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAA 592

Query: 453 EALFEIEPENPATYVTMANIYAS 475
           + + E++P +  T VT+ANI++S
Sbjct: 593 QRILELDPTSFTTLVTLANIHSS 615



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 213/454 (46%), Gaps = 66/454 (14%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           + S  ++ C Q+  +  G+ +H++ + +     VF+ + LLDMY + G I          
Sbjct: 98  VLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKI---------- 147

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                                +++  +F EMP R++ +WTA I+G V      E L  + 
Sbjct: 148 ---------------------DKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFS 186

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M  F+   S+ F  +  L A + ++ ++ G+EIH +++  GF +   V ++L+ MY +C
Sbjct: 187 QMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTEC 246

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G + +  ++F+ M +RDVV WT++I  Y + G+ E+    F  +  S + PN  TFA   
Sbjct: 247 GEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTF 306

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            ACA  +    G+Q+HG +  +G       +++++ MYS C  ++++  +F GM   D++
Sbjct: 307 AACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDII 366

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW+++I GY+Q    ++  +YF  + ++G QP       +L+      ++++G Q  H++
Sbjct: 367 SWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQ-VHAL 425

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAE---------DVIS----------------- 421
               GL       + ++++ ++ G   EA          D++S                 
Sbjct: 426 ALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEA 485

Query: 422 --------KMPMKPDKFLWASLLGGCRIHGNLDL 447
                   K+  +PD   + S+L  C   G LDL
Sbjct: 486 IDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDL 519



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 168/335 (50%), Gaps = 4/335 (1%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSS 164
           G L  AR +FD+MP+RD  SWTA++ GYV   +P EAL L+  M+     VS + + LS 
Sbjct: 42  GKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSV 101

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
            L A      +  G+ +H Y  +T   S   V SAL DMY + G I+++ ++F +M  R+
Sbjct: 102 ALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRN 161

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVH 283
            V+WTA I      G   EG   FS++ +   +  + F FA  L ACAD    + G+++H
Sbjct: 162 SVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIH 221

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            ++   G+    + A++L  MY++CG +++  ++F  M   D+V WTSLI  Y + G  +
Sbjct: 222 THVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEE 281

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           KA+  F L+  S   P+   F     AC     +  G Q  H      GL  +      +
Sbjct: 282 KAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQ-LHGNVFSLGLGDSLSVSNSM 340

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           + + +   +   A  +   M  + D   W++++GG
Sbjct: 341 MKMYSTCAKLDSASVLFQGMRCR-DIISWSTIIGG 374



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 35/323 (10%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           Q+S P+   ++S    C     L  G+++H ++ S G    + +SN ++ MY+ C  +  
Sbjct: 294 QVS-PNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDS 352

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A  LF  M+ RD+ S++T+I G+++    E+    F  M Q                 QP
Sbjct: 353 ASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAG--------------PQP 398

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            +                  F L+S+LS    +  L  G+++H   +  G + +  + SA
Sbjct: 399 TD------------------FALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSA 440

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L +MY KCGSI EA ++F++    D+VS TAMI  Y + G+ EE   LF + +K   RP+
Sbjct: 441 LINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPD 500

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVF 318
             TF  VL AC+     +LG Q    M       P       +V +  + G + +++K+ 
Sbjct: 501 DVTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMI 560

Query: 319 NGMP-RPDLVSWTSLIAGYAQNG 340
           N MP + D V WT+L+    + G
Sbjct: 561 NEMPWKKDDVVWTTLLRACKEKG 583



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS--G 255
           S L D+    G +  ARQ+FDKM  RD+ SWTA++  Y    + EE   LFS +     G
Sbjct: 33  SQLQDLIDS-GKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLG 91

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           +  + +  +  L AC   +    G+ +H Y  +       F  SAL+ MY + G ++ S 
Sbjct: 92  VSGDTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSC 151

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHA 374
           +VF  MP  + V+WT+ I G    G+  + L YF  + +      D   F   L AC   
Sbjct: 152 RVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADL 211

Query: 375 GLVDKGLQYFHS---IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
             V  G +  H+   +K    + + A+  A    +    G   +   +   M  + D  L
Sbjct: 212 RQVKYGRE-IHTHVIVKGFAAILWVANSLA---TMYTECGEMQDGLRLFESMSER-DVVL 266

Query: 432 WASLL 436
           W SL+
Sbjct: 267 WTSLI 271



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 13/217 (5%)

Query: 24  PSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           P P+ ++  SL+        LE+G++VH+     G +    I + L++MY+KCG+I +A 
Sbjct: 396 PQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEAS 455

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYN 137
            +F+E    D+ S   MI+G+ + G  E+A +LF++  +     D+ ++ ++++      
Sbjct: 456 KVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSG 515

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--EIHGYIMRTGFDSDEV 195
           Q       + +MQ   N    K     ++  +      R G+  +    I    +  D+V
Sbjct: 516 QLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLC-----RAGRLNDAEKMINEMPWKKDDV 570

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
           VW+ L     + G +   R+   ++++ D  S+T ++
Sbjct: 571 VWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLV 607


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 254/463 (54%), Gaps = 36/463 (7%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           ++I     HP    Y+ L+Q   + + L +   VH+H+  SG+    F+   LL++    
Sbjct: 1   MEIKQHHKHPHSPAYNLLLQAGPRLKLLHQ---VHAHVIVSGYGCSRFLLTKLLNLACAA 57

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G+IS                                 R +F  +P  D+F +T++I    
Sbjct: 58  GSIS-------------------------------YTRQIFLIVPNPDSFLFTSLIRSTS 86

Query: 135 RY-NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           ++ N  + +L  Y  M    N   + +T +SV+ + + +  LR G+ IHG+++  GF SD
Sbjct: 87  KFHNFSVYSLYFYTRMV-LSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSD 145

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V +AL   YGKCG +  AR++FDKM DR VV+W +MI  Y Q G  +E   LF  + +
Sbjct: 146 VYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKE 205

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
            G+ PN+ TF  VL+ACA   A  LG  VH Y    G D      ++L++MY++CGNV  
Sbjct: 206 IGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSK 265

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           +++VF+ M   ++V+WT++I+GY  NG   +A+E F  + ++G  P+ I FV VL+AC H
Sbjct: 266 AREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAH 325

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           AGLV++G + F S++E++ L    +H+ C+VD+L R+G   EA + I ++  +P   +W 
Sbjct: 326 AGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWT 385

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++LG C++H N  L  + AE     EP NPA YV ++NIYA A
Sbjct: 386 AMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALA 428



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 188/409 (45%), Gaps = 79/409 (19%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS   ++S+I+ C    AL  G+ +H H+  +GF   V++   L+  Y KCG + +A+ +
Sbjct: 109 PSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKV 168

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+M++R V ++N+MISG+ + G  ++A  LFD M +                 +P    
Sbjct: 169 FDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIG--------------VEP---- 210

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         N  T  SVLSA + +    LG  +H Y +  G D + V+ ++L +M
Sbjct: 211 --------------NSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINM 256

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +CG++++AR++FD M +R+VV+WTAMI  Y   G   +   LF E+ ++G+ PN+ TF
Sbjct: 257 YTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITF 316

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL+ACA HA                                  G V   ++VF  M  
Sbjct: 317 VAVLSACA-HA----------------------------------GLVNEGRRVFESMRE 341

Query: 324 -----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
                P++     L+    + G+ D+A  + + + +   +P   ++  +L AC       
Sbjct: 342 EYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHE---EPAPAIWTAMLGACKMHKNFG 398

Query: 379 KGLQYF-HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            G Q   H +  + G      HY  + ++ A +GR  + E V   M  K
Sbjct: 399 LGAQVAEHRLASEPG---NPAHYVILSNIYALAGRMDQVEMVRDNMIRK 444


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 152/431 (35%), Positives = 234/431 (54%), Gaps = 35/431 (8%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           EG++VH+  +  GF   + + N L+ +Y  CG   DA+ +FDEM  RDV S+  ++S F 
Sbjct: 131 EGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFV 190

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           +GG   +A  L  +M                                   + V N+ TL+
Sbjct: 191 RGGRFAEALVLVGQM-----------------------------------DVVPNEGTLA 215

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            VL A   +   R GK +HG+ +R   D   +V +A+ DMY KC  ++ AR++FD+++ R
Sbjct: 216 CVLVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVR 275

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DV+SWT MI    Q     +   +F+E+ KS ++P+    + VL+AC    A E G+ VH
Sbjct: 276 DVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVH 335

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y+ R G +      ++LV MY+KCG +E S  +F  MP  +L SW +LI G+A +G   
Sbjct: 336 EYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGR 395

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +ALE+F+ ++ SG  P+ + F+ VL AC H+GLV +GLQ F S+K  + L+   +HY  +
Sbjct: 396 EALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSV 455

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLL R+G  HEA  V   MPM+P  F W +LL  C+ H  +D +++    + E+E    
Sbjct: 456 VDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHELESSES 515

Query: 464 ATYVTMANIYA 474
             Y  ++NIYA
Sbjct: 516 GVYALLSNIYA 526



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 13  EALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +AL++ +++      P   + S+++  C    ALE G+ VH +++  G +  V +   L+
Sbjct: 295 KALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLV 354

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNF 124
           DMYAKCG +  + ++F +M  +++ S+N +I+GF   G   +A   FD M       +  
Sbjct: 355 DMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEV 414

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQN 151
           S+  ++          E L L+  M+N
Sbjct: 415 SFIIVLGACCHSGLVQEGLQLFESMKN 441



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 13/163 (7%)

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGI----RPNAFTFAGVLNACADHAAEEL----- 278
           + A+I      G     F  F+ L+ +G     RP+ +T    L ACA   A        
Sbjct: 71  FNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAGGDDGGLR 130

Query: 279 -GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+QVH    + G+       +ALV +Y  CG   ++++VF+ M   D+VSWT+L++ + 
Sbjct: 131 EGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFV 190

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           + G   +  E   L+ +    P+      VL AC   G    G
Sbjct: 191 RGG---RFAEALVLVGQMDVVPNEGTLACVLVACGRLGAARAG 230


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 249/452 (55%), Gaps = 33/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P +Y S+I  C Q + L   + +H+HL  S      F+ N L+ MY KCG +SD    
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSD---- 113

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                      AR++FD+MP RD  SWT +I+GY +   P EA+
Sbjct: 114 ---------------------------ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAI 146

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L   M        N FT +S+L A  A     +G+++H   ++  +D D  V SAL DM
Sbjct: 147 GLLPDMLR-ARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDM 205

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y +C  ++ A  +FD++V ++ VSW A+I  + ++   E     F+E+ ++G     FT+
Sbjct: 206 YARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTY 265

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + + +A A   A E G+ VH ++ + G    +F  + ++ MY+K G++ +++KVF+ M +
Sbjct: 266 SSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDK 325

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLV+W +++   AQ G+  +A+ +FE + K G Q + I F+ VLTAC+H GLV +G  Y
Sbjct: 326 RDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHY 385

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +K+ + +    DHY   VDLL R+G   EA   + KMPM+P   +W +LLG CR+H 
Sbjct: 386 FDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHK 444

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           N  + + AA+ +FE++P++    V + NIYAS
Sbjct: 445 NAKMGQYAADHVFELDPDDTGPPVLLYNIYAS 476



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 7/192 (3%)

Query: 250 ELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           +L+ +G + P    +  ++ ACA        + +H +++R      +F  ++L+HMY KC
Sbjct: 49  DLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKC 108

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G V +++ VF+ MP  D+VSWT LIAGYAQN MP +A+     +L++  +P+   F  +L
Sbjct: 109 GAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLL 168

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMK 426
            A    G    G Q  H++  K+   +  D Y  + ++D+ AR  +   A  V  ++  K
Sbjct: 169 KATGACGGCSIGEQ-MHALAVKY--NWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSK 225

Query: 427 PDKFLWASLLGG 438
            ++  W +L+ G
Sbjct: 226 -NEVSWNALIAG 236


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 262/503 (52%), Gaps = 36/503 (7%)

Query: 4   ILCNQRRLKEALQILHQISHPSPSI----------YSSLI----------QFCRQNRAL- 42
           I  NQ R  +A  +LH +  P+  I          YSS +           F    R L 
Sbjct: 44  ISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLT 103

Query: 43  ------EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI----SDAQTLFDEMQERDV 92
                 E    ++  +K SG KP  F  N +    AK   I    S   +LF    ERDV
Sbjct: 104 NTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDV 163

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
              +++I  + K G +  AR LFDE+ +RD  SW +MISGY       +A+DL+R M+  
Sbjct: 164 HINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEE- 222

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           E    ++ TL S+L A S +  LR G+ +    +         + S L  MYGKCG ++ 
Sbjct: 223 EGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDS 282

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           AR++F++M+ +D V+WTAMI  Y Q G+  E F LF E+ K+G+ P+A T + VL+AC  
Sbjct: 283 ARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 342

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
             A ELGKQ+  + + +      + A+ LV MY KCG VE + +VF  MP  +  +W ++
Sbjct: 343 VGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAM 402

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I  YA  G   +AL  F+   +    P  I F+GVL+AC HAGLV +G +YFH +    G
Sbjct: 403 ITAYAHQGHAKEALLLFD---RMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFG 459

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           L    +HY  I+DLL+R+G   EA + + + P KPD+ + A++LG C    ++ + ++A 
Sbjct: 460 LVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAM 519

Query: 453 EALFEI-EPENPATYVTMANIYA 474
             L E+ E +N   YV  +N+ A
Sbjct: 520 RMLMEMKEAKNAGNYVISSNVLA 542



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 195/394 (49%), Gaps = 23/394 (5%)

Query: 57  FKPGVF-------ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLE 109
           FKP  F       +    L +  KC +++  + +  +M    V   N +I    + G   
Sbjct: 19  FKPRQFEEARRGDLERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFN 78

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVR-YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
            +  LF    + +++S+  MI G    +N    AL LYR M+ F     +KFT + V  A
Sbjct: 79  YSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMK-FSGLKPDKFTYNFVFIA 137

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
            + ++ + +G+ +H  + + G + D  +  +L  MY KCG +  AR++FD++ +RD VSW
Sbjct: 138 CAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSW 197

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH--GYM 286
            +MI  Y + G  ++   LF ++ + G  P+  T   +L AC+       G+ +      
Sbjct: 198 NSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAIT 257

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            +IG    +F  S L+ MY KCG+++++++VFN M + D V+WT++I  Y+QNG   +A 
Sbjct: 258 KKIGLS--TFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAF 315

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH----YAC 402
           + F  + K+G  PD      VL+AC   G ++ G Q      E H    +  H       
Sbjct: 316 KLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQI-----ETHASELSLQHNIYVATG 370

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +VD+  + GR  EA  V   MP+K ++  W +++
Sbjct: 371 LVDMYGKCGRVEEALRVFEAMPVK-NEATWNAMI 403


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 249/453 (54%), Gaps = 36/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +++ C +   ++EG++VH      GF   +++ N LL  Y+ CG        
Sbjct: 103 PDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGK------- 155

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                GG    A  +FDEM  RD  SWT +ISGYVR     EA+
Sbjct: 156 --------------------WGG----AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAI 191

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M    + V N  T  SVL A   +  L +GK +HG + +  F    VV +AL DM
Sbjct: 192 NLFLKM----DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDM 247

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  + EAR++FD++ DRD+VSWT++I    Q  + ++   LF ++  SG+ P+    
Sbjct: 248 YVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIIL 307

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL+ACA   A + G+ V  Y+ R G +      +ALV MY+KCG +E +  +FNG+P 
Sbjct: 308 TSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPN 367

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++ +W +L+ G A +G   +AL++FEL++ +G +P+ + F+ +LTAC H+GLV +G  Y
Sbjct: 368 RNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSY 427

Query: 384 FHS-IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           F+  I +    +   +HY C++DLL R+G   EA   I  MP+ PD  +W +LL  C+ +
Sbjct: 428 FYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKAN 487

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           GN++L++     L E++ ++   YV ++NIYA+
Sbjct: 488 GNVELSQEILSHLLELKSQDSGVYVLLSNIYAT 520



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 23/284 (8%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           +L+++   + +R  K+IH +++ +G   DE V S +S+ +GK   I      FD +   D
Sbjct: 8   LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGK--HIGFVDYAFDFLNQTD 65

Query: 225 V----VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
           +    + +  +I  Y      +  F ++  ++ +G  P+ +TF  VL AC      + G+
Sbjct: 66  LHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGE 125

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           QVHG   ++G+    +  ++L+H YS CG    + +VF+ M   D+VSWT LI+GY + G
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTG 185

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
           + D+A+  F   LK    P+   FV VL AC   G +  G       K  HGL Y     
Sbjct: 186 LFDEAINLF---LKMDVVPNVATFVSVLVACGRMGYLSMG-------KGVHGLVYKRAFG 235

Query: 401 A------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                   +VD+  +     EA  +  ++P + D   W S++ G
Sbjct: 236 IGLVVGNALVDMYVKCECLCEARKLFDELPDR-DIVSWTSIISG 278


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 152/389 (39%), Positives = 232/389 (59%), Gaps = 4/389 (1%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D  + N +I+ + +  +++ A+ LFDEMP R+  SWT++++GYV   QP  AL L+  MQ
Sbjct: 58  DTFATNHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLMAGYVSQGQPNMALCLFHQMQ 117

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                + N+FT +++++A S +  L +G+ IH  +  +G  S+ V  S+L DMYGKC  +
Sbjct: 118 G-TLVLPNEFTFATLINACSILANLEIGRRIHALVEVSGLGSNLVACSSLIDMYGKCNHV 176

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI-RPNAFTFAGVLNA 269
           +EAR IFD M  R+VVSWT+MI  Y Q  +      LF E   S + +PN F     ++A
Sbjct: 177 DEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEFNHSRLDKPNHFMLCSAVSA 236

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA   +   GK  HG + R+G++     ASALV MY+KCG V  S K+F  +  P ++ +
Sbjct: 237 CASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAKCGCVNYSAKIFRRIQNPSVIPY 296

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           TS+I G A+ G+   +L+ F+ ++    +P+ I FVGVL AC+H+GLVDKGL+   S+  
Sbjct: 297 TSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACSHSGLVDKGLELLDSMDG 356

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF--LWASLLGGCRIHGNLDL 447
           K+G+T  A HY CI D+L R GR  EA  +   + ++ D +  LW +LL   R++G +D+
Sbjct: 357 KYGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQVEGDGYAMLWGTLLSASRLYGRVDI 416

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
           A  A+  L E   +    YVT++N YA A
Sbjct: 417 ALEASNRLIESNQQVAGAYVTLSNAYALA 445



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 170/353 (48%), Gaps = 39/353 (11%)

Query: 14  ALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           AL + HQ+      P+   +++LI  C     LE G+++H+ ++ SG    +   + L+D
Sbjct: 109 ALCLFHQMQGTLVLPNEFTFATLINACSILANLEIGRRIHALVEVSGLGSNLVACSSLID 168

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY KC ++ +A+ +FD M  R+V S+ +MI+ +++      A  LF E            
Sbjct: 169 MYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEF----------- 217

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
              + R ++P                  N F L S +SA +++  L  GK  HG ++R G
Sbjct: 218 --NHSRLDKP------------------NHFMLCSAVSACASLGSLGSGKITHGVVIRLG 257

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
            ++ +V+ SAL DMY KCG +N + +IF ++ +  V+ +T+MI    + G       LF 
Sbjct: 258 HEASDVIASALVDMYAKCGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQ 317

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKC 308
           E++   I+PN  TF GVL+AC+     + G ++   M  + G  P +   + +  M  + 
Sbjct: 318 EMVVRRIKPNDITFVGVLHACSHSGLVDKGLELLDSMDGKYGVTPDAKHYTCIADMLGRV 377

Query: 309 GNVENSKKVFNGMPRPD---LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           G +E + ++   +        + W +L++     G  D ALE    L++S  Q
Sbjct: 378 GRIEEAYQLAKSVQVEGDGYAMLWGTLLSASRLYGRVDIALEASNRLIESNQQ 430



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 141/269 (52%), Gaps = 15/269 (5%)

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  ++++G  +D    + L + Y +  +I+ A+++FD+M  R+VVSWT+++  Y  +G+ 
Sbjct: 47  HSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLMAGYVSQGQP 106

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
                LF ++  + + PN FTFA ++NAC+  A  E+G+++H  +   G      A S+L
Sbjct: 107 NMALCLFHQMQGTLVLPNEFTFATLINACSILANLEIGRRIHALVEVSGLGSNLVACSSL 166

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPD 360
           + MY KC +V+ ++ +F+ M   ++VSWTS+I  Y+QN     AL+ F+    S   +P+
Sbjct: 167 IDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEFNHSRLDKPN 226

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFH 414
           H +    ++AC   G +  G       K  HG+     H A       +VD+ A+ G  +
Sbjct: 227 HFMLCSAVSACASLGSLGSG-------KITHGVVIRLGHEASDVIASALVDMYAKCGCVN 279

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            +  +  ++   P    + S++ G   +G
Sbjct: 280 YSAKIFRRIQ-NPSVIPYTSMIVGAAKYG 307



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 107/269 (39%), Gaps = 49/269 (18%)

Query: 14  ALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           ALQ+  + +H     P+  +  S +  C    +L  GK  H  +   G +    I++ L+
Sbjct: 210 ALQLFKEFNHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEASDVIASALV 269

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKCG ++ +  +F  +Q   V  Y +MI G  K G    +  LF EM          
Sbjct: 270 DMYAKCGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEM---------- 319

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI-MR 187
                VR  +P                  N  T   VL A S    +  G E+   +  +
Sbjct: 320 ----VVRRIKP------------------NDITFVGVLHACSHSGLVDKGLELLDSMDGK 357

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRD--VVSWTAMIGRYFQEGRREEG 244
            G   D   ++ ++DM G+ G I EA Q+   + V+ D   + W  ++      GR +  
Sbjct: 358 YGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQVEGDGYAMLWGTLLSASRLYGRVDIA 417

Query: 245 FALFSELIKSGIR--------PNAFTFAG 265
               + LI+S  +         NA+  AG
Sbjct: 418 LEASNRLIESNQQVAGAYVTLSNAYALAG 446


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 147/408 (36%), Positives = 240/408 (58%), Gaps = 2/408 (0%)

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY+K G+   A  ++  M++++  S N +I+G+ + G L  AR +FDEMP R   +W AM
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+G +++    E L L+R M     S  +++TL SV S  + ++ + +G++IHGY ++ G
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYG 119

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
            + D VV S+L+ MY + G + +   +   M  R++V+W  +I    Q G  E    L+ 
Sbjct: 120 LELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYK 179

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
            +  SG RPN  TF  VL++C+D A    G+Q+H    +IG        S+L+ MYSKCG
Sbjct: 180 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCG 239

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVGVL 368
            + ++ K F+     D V W+S+I+ Y  +G  D+A+E F  +  ++  + + + F+ +L
Sbjct: 240 CLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 299

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC+H+GL DKGL+ F  + EK+G      HY C+VDLL R+G   +AE +I  MP+K D
Sbjct: 300 YACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTD 359

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W +LL  C IH N ++A+R  + + +I+P + A YV +AN++ASA
Sbjct: 360 IVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASA 407



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 146/318 (45%), Gaps = 35/318 (11%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           R++  G+++H +    G +  + +++ L  MY + G + D + +   M  R++ ++NT+I
Sbjct: 103 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 162

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
            G  + G                                P   L LY+MM+       NK
Sbjct: 163 MGNAQNGC-------------------------------PETVLYLYKMMK-ISGCRPNK 190

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T  +VLS+ S +     G++IH   ++ G  S   V S+L  MY KCG + +A + F +
Sbjct: 191 ITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE 250

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEEL 278
             D D V W++MI  Y   G+ +E   LF+ +  ++ +  N   F  +L AC+    ++ 
Sbjct: 251 REDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDK 310

Query: 279 GKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGY 336
           G ++   M  + G+ P     + +V +  + G ++ ++ +   MP + D+V W +L++  
Sbjct: 311 GLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSAC 370

Query: 337 AQNGMPDKALEYFELLLK 354
             +   + A   F+ +L+
Sbjct: 371 NIHKNAEMAQRVFKEILQ 388



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 35/238 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + +++  C       +G+++H+     G    V + + L+ MY+KCG + DA   
Sbjct: 188 PNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKA 247

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F E ++ D   +++MIS +   G  ++A  LF+ M ++ N                    
Sbjct: 248 FSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNME------------------ 289

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSD 202
                         N+    ++L A S       G E+   ++ + GF      ++ + D
Sbjct: 290 -------------INEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVD 336

Query: 203 MYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           + G+ G +++A  I   M +  D+V W  ++         E    +F E+++  I PN
Sbjct: 337 LLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--IDPN 392


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 262/503 (52%), Gaps = 36/503 (7%)

Query: 4   ILCNQRRLKEALQILHQISHPSPSI----------YSSLI----------QFCRQNRAL- 42
           I  NQ R  +A  +LH +  P+  I          YSS +           F    R L 
Sbjct: 48  ISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLT 107

Query: 43  ------EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI----SDAQTLFDEMQERDV 92
                 E    ++  +K SG KP  F  N +    AK   I    S   +LF    ERDV
Sbjct: 108 NTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDV 167

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
              +++I  + K G +  AR LFDE+ +RD  SW +MISGY       +A+DL+R M+  
Sbjct: 168 HINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEE- 226

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           E    ++ TL S+L A S +  LR G+ +    +         + S L  MYGKCG ++ 
Sbjct: 227 EGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDS 286

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           AR++F++M+ +D V+WTAMI  Y Q G+  E F LF E+ K+G+ P+A T + VL+AC  
Sbjct: 287 ARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 346

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
             A ELGKQ+  + + +      + A+ LV MY KCG VE + +VF  MP  +  +W ++
Sbjct: 347 VGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAM 406

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I  YA  G   +AL  F+   +    P  I F+GVL+AC HAGLV +G +YFH +    G
Sbjct: 407 ITAYAHQGHAKEALLLFD---RMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFG 463

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           L    +HY  I+DLL+R+G   EA + + + P KPD+ + A++LG C    ++ + ++A 
Sbjct: 464 LVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAM 523

Query: 453 EALFEI-EPENPATYVTMANIYA 474
             L E+ E +N   YV  +N+ A
Sbjct: 524 RMLMEMKEAKNAGNYVISSNVLA 546



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 209/430 (48%), Gaps = 31/430 (7%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           +LQ+L +    + SIY    +F  + R  EE ++               +    L +  K
Sbjct: 2   SLQMLIKPEKLAFSIYRQFPKF--KPRQFEEARRGD-------------LERDFLFLLKK 46

Query: 74  CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
           C +++  + +  +M    V   N +I    + G    +  LF    + +++S+  MI G 
Sbjct: 47  CISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGL 106

Query: 134 VR-YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
              +N    AL LYR M+ F     +KFT + V  A + ++ + +G+ +H  + + G + 
Sbjct: 107 TNTWNDHEAALSLYRRMK-FSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLER 165

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D  +  +L  MY KCG +  AR++FD++ +RD VSW +MI  Y + G  ++   LF ++ 
Sbjct: 166 DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKME 225

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVH--GYMTRIGYDPYSFAASALVHMYSKCGN 310
           + G  P+  T   +L AC+       G+ +       +IG    +F  S L+ MY KCG+
Sbjct: 226 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS--TFLGSKLISMYGKCGD 283

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           ++++++VFN M + D V+WT++I  Y+QNG   +A + F  + K+G  PD      VL+A
Sbjct: 284 LDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSA 343

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADH----YACIVDLLARSGRFHEAEDVISKMPMK 426
           C   G ++ G Q      E H    +  H       +VD+  + GR  EA  V   MP+K
Sbjct: 344 CGSVGALELGKQI-----ETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVK 398

Query: 427 PDKFLWASLL 436
            ++  W +++
Sbjct: 399 -NEATWNAMI 407


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 248/455 (54%), Gaps = 34/455 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +SS +  C     + +G+++ +   +SG+     + N L++MY+KC         
Sbjct: 161 PDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC--------- 211

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                 GSLE AR +FD +  RD  +W  MISGY +     +AL
Sbjct: 212 ----------------------GSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQAL 249

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    +   N  T   +L+A + ++ L  G+ IH  +   G++SD V+ + L +M
Sbjct: 250 ELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNM 308

Query: 204 YGKCGS-INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           Y KC S + EARQ+F++M  RDV++W  +I  Y Q G+ ++   +F ++    + PN  T
Sbjct: 309 YTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEIT 368

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            + VL+ACA   A+  GK VH  +            ++L++MY++CG+++++  VF  + 
Sbjct: 369 LSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR 428

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              LVSW++LIA YAQ+G     LE+F  LL+ G   D +  V  L+AC+H G++ +G+Q
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQ 488

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            F S+   HGL     H+ C+VDLL+R+GR   AE++I  MP  PD   W SLL GC++H
Sbjct: 489 TFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLH 548

Query: 443 GNLDLAKRAAEALFEIEPENPATYVT-MANIYASA 476
            +   A R A+ LFE+E E+  + VT ++N+YA A
Sbjct: 549 NDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 24/479 (5%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-----VFISN 65
           + +AL + H I HP+   ++ ++    +N    E    +  +   G +P      V I  
Sbjct: 8   VADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV 67

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
           C      K G +  A  L   + E D+     +I+ + +   LE AR  FDEM ++   +
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 126 WTAMISGYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           W A+I+GY R      AL +Y+ M  ++ E    +  T SS L A + +  +  G+EI  
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEA 187

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
             + +G+ SD +V +AL +MY KCGS+  AR++FD++ +RDV++W  MI  Y ++G   +
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF  +  +  +PN  TF G+L AC +    E G+ +H  +   GY+      + L++
Sbjct: 248 ALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLN 307

Query: 304 MYSKC-GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           MY+KC  ++E +++VF  M   D+++W  LI  Y Q G    AL+ F+ +      P+ I
Sbjct: 308 MYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEI 367

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV---DLLARSGRFHEAEDV 419
               VL+AC   G   +G       K  H L  +    A +V    L+    R    +D 
Sbjct: 368 TLSNVLSACAVLGAKRQG-------KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 420 ISKMPMKPDKFL--WASLLGGCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
           +       DK L  W++L+     HG+   ++   E  +E+  E   A  VTM +  ++
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGH---SRTGLEHFWELLQEGLAADDVTMVSTLSA 476



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 180/357 (50%), Gaps = 41/357 (11%)

Query: 13  EALQILHQI--SHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +AL++  ++  + P P++ +   L+  C     LE+G+ +H  ++  G++  + I N LL
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLL 306

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           +MY KC +                              SLE+AR +F+ M  RD  +W  
Sbjct: 307 NMYTKCSS------------------------------SLEEARQVFERMRTRDVITWNI 336

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I  YV+Y Q  +ALD+++ MQ  EN   N+ TLS+VLSA + +   R GK +H  I   
Sbjct: 337 LIVAYVQYGQAKDALDIFKQMQ-LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
              +D V+ ++L +MY +CGS+++   +F  + D+ +VSW+ +I  Y Q G    G   F
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHF 455

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG---YDPYSFAASALVHMY 305
            EL++ G+  +  T    L+AC+      L + V  +++ +G     P       +V + 
Sbjct: 456 WELLQEGLAADDVTMVSTLSACSHGGM--LKEGVQTFLSMVGDHGLAPDYRHFLCMVDLL 513

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           S+ G +E ++ + + MP  PD V+WTSL++G   +    +A    + L +  ++ +H
Sbjct: 514 SRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 198/382 (51%), Gaps = 16/382 (4%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K GS+  A  +F  +   ++ SWT +++ + R     EAL  YR M   E    +   
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMV-LEGLRPDGAM 60

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
               +   S+ + L+ G+ +H  I+ T   + D ++ +AL  MY +C  +  AR+ FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS---GIRPNAFTFAGVLNACADHAAEE 277
             + +V+W A+I  Y + G       ++ +++     G++P+A TF+  L AC       
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+++       GY   S   +AL++MYSKCG++E+++KVF+ +   D+++W ++I+GYA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           + G   +ALE F+ +  +  +P+ + F+G+LTACT+   +++G      ++E     Y +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED---GYES 297

Query: 398 DHYA--CIVDLLAR-SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
           D      ++++  + S    EA  V  +M  + D   W  L+     +G    AK A + 
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQ---AKDALDI 353

Query: 455 LFEIEPENPA-TYVTMANIYAS 475
             +++ EN A   +T++N+ ++
Sbjct: 354 FKQMQLENVAPNEITLSNVLSA 375



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 9/270 (3%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MYGKCGS+ +A  +F  +   + VSWT ++  + + G   E    +  ++  G+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNGM 321
           F   +  C+     + G+ +H  +       +     +AL+ MY++C ++E ++K F+ M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALE-YFELLLKS--GTQPDHIVFVGVLTACTHAGLVD 378
            +  LV+W +LIAGY++NG    AL+ Y +++ KS  G +PD I F   L ACT  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G +   +     G    +     ++++ ++ G    A  V  ++  + D   W +++ G
Sbjct: 181 QGRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISG 238

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVT 468
               G    A +A E    + P +P   V 
Sbjct: 239 YAKQG---AATQALELFQRMGPNDPKPNVV 265


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 160/479 (33%), Positives = 269/479 (56%), Gaps = 11/479 (2%)

Query: 6   CNQRRLKEALQILHQISHP-SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           CNQ     AL I    +H  +   ++++I     N   EEG + +  +++ G  P  F  
Sbjct: 5   CNQMNF--ALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTF 62

Query: 65  NCLLDMYAKCGNISDAQ-TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            C +        I      LF    E DV   + +++ + K G +E A+  F+E+P RD 
Sbjct: 63  PCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDV 122

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
             W AM++GY +  Q    L+ +R M N E+ V ++FT++ +LS  + +  L  G+ IHG
Sbjct: 123 VLWNAMVNGYAQIGQFEMVLETFRRM-NDESVVPSRFTVTGILSVFAVMGDLNNGRIIHG 181

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           + M+ G+DS   V ++L DMYGKC  I +A +IF+ M ++D+ SW ++   + Q G  + 
Sbjct: 182 FAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDG 241

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPYS----FA 297
              L   ++ +GI+P+  T   VL AC+  AA   G+++HGYM  + +G D         
Sbjct: 242 TLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLL 301

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +A++ MY+KCG++ ++  VF  M   D+ SW  +I GY  +G  ++ALE F  + +   
Sbjct: 302 KNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQL 361

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD + FVGVL+AC+HAG V +G  +   +K K+ +  T +HY C++D+L R+G+  EA 
Sbjct: 362 KPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAY 421

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++   MP++ +  +W +LL  CR+H +  LA+ AA+ +FE+EPE+  +YV M+N+Y + 
Sbjct: 422 ELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAV 480



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 6/234 (2%)

Query: 203 MYGKCGSINEARQIF-DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           MY KC  +N A  IF D   + +V ++ A+I  +   G  EEGF  + ++   G+ P+ F
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TF   + AC D    E+ K++HG + + G +   F  SALV+ Y K G +E+++  F  +
Sbjct: 61  TFPCAIKACLD--VLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL 117

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P  D+V W +++ GYAQ G  +  LE F  +      P      G+L+     G ++ G 
Sbjct: 118 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNG- 176

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           +  H    K G          ++D+  +     +A ++   M  K D F W S+
Sbjct: 177 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSI 229


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 246/417 (58%), Gaps = 13/417 (3%)

Query: 67  LLDMYAKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           +L + A+ G + +A+    ++     E DV   N +I+ ++K G +E AR +FD M +R 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV----SAIQCLRLG 178
             SW  MI  Y R     EALD++  M+N E    ++FT+SSVLSA      A++C    
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRN-EGFKFSEFTISSVLSACGVNCDALEC---- 181

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K++H   ++T  D +  V +AL D+Y KCG I +A Q+F+ M D+  V+W++M+  Y Q 
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              EE   L+    +  +  N FT + V+ AC++ AA   GKQ+H  + + G+    F A
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 301

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           S+ V MY+KCG++  S  +F+ +   +L  W ++I+G+A++  P + +  FE + + G  
Sbjct: 302 SSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 361

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+ + F  +L+ C H GLV++G ++F  ++  +GL+    HY+C+VD+L R+G   EA +
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYE 421

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +I  +P  P   +W SLL  CR++ NL+LA+ AAE LFE+EPEN   +V ++NIYA+
Sbjct: 422 LIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAA 478



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 160/327 (48%), Gaps = 9/327 (2%)

Query: 118 MPQRDNFS-WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +P+R N S  +  IS    Y+Q  E +   R    + N  SN+  +  +L   +    + 
Sbjct: 25  LPRRSNTSSLSRNISVLASYDQ--EEVSPGR----YSNEFSNRNLVHEILQLCARNGAVM 78

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
             K  HG I+R   + D  + + L + Y KCG +  ARQ+FD M++R +VSW  MIG Y 
Sbjct: 79  EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 138

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           +     E   +F E+   G + + FT + VL+AC  +      K++H    +   D   +
Sbjct: 139 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLY 198

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             +AL+ +Y+KCG ++++ +VF  M     V+W+S++AGY QN   ++AL  +    +  
Sbjct: 199 VGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 258

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            + +      V+ AC++   + +G Q  H++  K G        +  VD+ A+ G   E+
Sbjct: 259 LEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSGFGSNVFVASSAVDMYAKCGSLRES 317

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHG 443
             + S++  K  + LW +++ G   H 
Sbjct: 318 YIIFSEVQEKNLE-LWNTIISGFAKHA 343



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 38/339 (11%)

Query: 2   IDILCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I +    R   EAL I  ++ +     S    SS++  C  N    E KK+H     +  
Sbjct: 134 IGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCI 193

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
              +++   LLD+YAKCG I DA  +F+ MQ++   ++++M++G+ +  + E        
Sbjct: 194 DLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE-------- 245

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
                                  EAL LYR  Q       N+FTLSSV+ A S +  L  
Sbjct: 246 -----------------------EALLLYRRAQRMSLE-QNQFTLSSVICACSNLAALIE 281

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK++H  I ++GF S+  V S+  DMY KCGS+ E+  IF ++ ++++  W  +I  + +
Sbjct: 282 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAK 341

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSF 296
             R +E   LF ++ + G+ PN  TF+ +L+ C      E G++    M T  G  P   
Sbjct: 342 HARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVV 401

Query: 297 AASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
             S +V +  + G +  + ++   +P  P    W SL+A
Sbjct: 402 HYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLA 440


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 252/457 (55%), Gaps = 11/457 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM- 87
           ++S+I    QN+  E+  K ++ ++ +G  P  F     L   A  G I   Q    E  
Sbjct: 172 WNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGI 231

Query: 88  ---QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EAL 143
               + DV   NT+++ + +   L + + +F  M +RD  SW  +I         + EA+
Sbjct: 232 KLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAI 291

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +++  M     S  N+ T  ++L+ VS++   +L  +IH  I++     D  + +AL   
Sbjct: 292 EVFLEMMRAGWS-PNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLAC 350

Query: 204 YGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           YGK G +    +IF +M +R D VSW +MI  Y       +   L   +++ G R + FT
Sbjct: 351 YGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFT 410

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           FA VL+ACA  A  E G +VH    R   +      SALV MYSKCG ++ + + FN MP
Sbjct: 411 FATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMP 470

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             +L SW S+I+GYA++G  D AL  F  +  SG  PDHI FVGVL+AC+H GLVD+G +
Sbjct: 471 VRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFE 530

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+ E +GL    +HY+C+VDLL R+G   + E+ I+KMP+KP+  +W ++LG C   
Sbjct: 531 YFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGAC-CR 589

Query: 443 GN---LDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           GN    +L +RAAE LF ++P+N   YV ++N+YAS 
Sbjct: 590 GNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASG 626



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 187/354 (52%), Gaps = 8/354 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           NT+I+ + + G    AR LFDEMP R+  +W  +ISGY +   P +A  + + M  FE  
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMI-FEGF 97

Query: 156 VSNKFTLSSVLSAVS-AIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEA 213
           + N+F   S + A   ++   R G+++HGY +RTG +  +V V + L +MY KCG I+ A
Sbjct: 98  LPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHA 157

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           R +F  MVD+D VSW +MI    Q    E+    ++ + K+G+ P+ F     L++CA  
Sbjct: 158 RSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASL 217

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               LG+Q HG   ++G D     ++ L+ +Y++   +   +KVF+ M   D VSW ++I
Sbjct: 218 GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVI 277

Query: 334 AGYAQNGMP-DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY-FHSIKEKH 391
              A +G    +A+E F  ++++G  P+ + F+ +L   T + L    L +  H++  K+
Sbjct: 278 GALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLA--TVSSLSTSKLSHQIHALILKY 335

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +         ++    +SG     E++ S+M  + D+  W S++ G  IH  L
Sbjct: 336 NVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG-YIHNEL 388



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 215/431 (49%), Gaps = 38/431 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALE-EGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQ 81
           P+   + S I+ C+++     +G++VH +   +G     V + N L++MYAKCG+I  A+
Sbjct: 99  PNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
           ++F  M ++D  S+N+MI+G  +    E A   ++ M +          +G +  N    
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK----------TGLMPSN---- 204

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
                             F L S LS+ +++ C+ LG++ HG  ++ G D D  V + L 
Sbjct: 205 ------------------FALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLL 246

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR-EEGFALFSELIKSGIRPNA 260
            +Y +   + E +++F  M++RD VSW  +IG     G    E   +F E++++G  PN 
Sbjct: 247 ALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNR 306

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            TF  +L   +  +  +L  Q+H  + +      +   +AL+  Y K G +EN +++F+ 
Sbjct: 307 VTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSR 366

Query: 321 MP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           M  R D VSW S+I+GY  N +  KA++   L+++ G + D   F  VL+AC     ++ 
Sbjct: 367 MSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLEC 426

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G++  H+   +  L       + +VD+ ++ GR   A    + MP++ + + W S++ G 
Sbjct: 427 GME-VHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGY 484

Query: 440 RIHGNLDLAKR 450
             HG+ D A R
Sbjct: 485 ARHGHGDNALR 495



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 135/259 (52%), Gaps = 4/259 (1%)

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  +++ GFDSD  + + L ++Y + G    AR++FD+M DR+ V+W  +I  Y Q G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAA-EELGKQVHGYMTRIGYDPYSFA-AS 299
           E+   +  E+I  G  PN F F   + AC +       G+QVHGY  R G +    A  +
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            L++MY+KCG++++++ VF  M   D VSW S+I G  QN   + A++ +  + K+G  P
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
            +   +  L++C   G +  G Q  H    K GL         ++ L A + R  E + V
Sbjct: 203 SNFALISALSSCASLGCILLG-QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 420 ISKMPMKPDKFLWASLLGG 438
            S M ++ D+  W +++G 
Sbjct: 262 FSWM-LERDQVSWNTVIGA 279


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 251/479 (52%), Gaps = 91/479 (18%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           + S +  C     L  G +VH+ +  S +   V++ + L+DMY+KCG+++          
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA---------- 199

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
               C                 A  +F  M +R+  +W ++I+ Y +     EAL+++ R
Sbjct: 200 ----C-----------------AEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVR 238

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGK 206
           MM +      ++ TL+SV+SA +++  L+ G +IH  +++T  F  D V+ +AL DMY K
Sbjct: 239 MMDS--GLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAK 296

Query: 207 CGSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRY 235
           C  +NEAR++FD                               KM  R+VVSW A+I  Y
Sbjct: 297 CSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGY 356

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G  EE   LF  L +  I P  +TF  +L +                          
Sbjct: 357 TQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDI------------------------ 392

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F  ++L+ MY KCG++E+  +VF  M   D VSW ++I GYAQNG   +AL+ F  +L  
Sbjct: 393 FVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVC 452

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PDH+  +GVL AC+HAGLV++G  YF S+ E+HGL    DHY C+VDLL R+G  +E
Sbjct: 453 GEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNE 511

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           A+++I  MP+ PD  +W SLL  C++HGN+++ K AAE L EI+P N   YV ++N+YA
Sbjct: 512 AKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYA 570



 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 242/462 (52%), Gaps = 52/462 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ S ++ L+  C ++R+    + VH+ +  + F   +FI N L+D+Y KC  + DA+ L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M +R+  ++N++IS  TK G L++A  LF  MP+ D  SW +M+SG+ ++++  E+L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           + +  M   E+ + N+++  S LSA + +  L +G ++H  + ++ + +D  + SAL DM
Sbjct: 133 EYFVKMHR-EDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+  A ++F  M++R++V+W ++I  Y Q G   E   +F  ++ SG+ P+  T 
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFN--- 319
           A V++ACA   A + G Q+H  + +   +       +ALV MY+KC  V  +++VF+   
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 320 ----------------------------GMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                                        M + ++VSW +LIAGY QNG  ++AL  F L
Sbjct: 312 IRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRL 371

Query: 352 LLKSGTQPDHI---------VFVG--VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
           L +    P H          +FVG  ++      G ++ G + F  +KE+  +++ A   
Sbjct: 372 LKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNA--- 428

Query: 401 ACIVDLLARSGRFHEAEDVISKMPM---KPDKFLWASLLGGC 439
             I+   A++G   EA  +  KM +   KPD      +L  C
Sbjct: 429 --IIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCAC 468



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 39/220 (17%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           L++    PN+  FA +L++C    +    + VH  +    +    F  + L+ +Y KC  
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 311 VENSKKVFN-------------------------------GMPRPDLVSWTSLIAGYAQN 339
           +++++K+F+                                MP PD  SW S+++G+AQ+
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTAD 398
              +++LEYF  + +     +   F   L+AC  AGL+D  +    H++  K    Y+ D
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSAC--AGLMDLNMGTQVHALVSKS--RYSTD 181

Query: 399 HY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            Y  + ++D+ ++ G    AE+V S M ++ +   W SL+
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLI 220


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 267/470 (56%), Gaps = 15/470 (3%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL++  ++       +   ++ L++    ++ALE+G+ +H  +   GF   VF+ N L
Sbjct: 56  KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSL 115

Query: 68  LDMYAKCG-NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L  YA C  N+  A  +F+EM ERDV S+N+MIS +   G ++ A  L D+MP+R+  +W
Sbjct: 116 LGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTW 175

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            +++ G  +      A  ++  M      + N+ + +S++S    I  +R  + I  Y M
Sbjct: 176 NSVVCGLSKAGNMELAHSVFEQM-----PLRNEVSWNSMISGYVRIGDVRAAQSIF-YQM 229

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
               +   V W+A+   Y   G +  A  IF+ M  ++VVSW AMI  Y      ++   
Sbjct: 230 P---EKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALC 286

Query: 247 LFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           +F  ++ +G  RP+  T   +L+ACA   + E GK ++ Y+ +          +AL+ M+
Sbjct: 287 VFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMF 346

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG+VEN+K+VF+ M +  +++WT++++G A NG   +A+  F+ +   GT+PD ++F+
Sbjct: 347 AKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFI 406

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VL+ACTH GLV++G + F  + ++ G+    +HY C+VDLL R+G+  EA    ++M +
Sbjct: 407 AVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHL 466

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           KP+  +WA+LL  C+IHGN DL K   E + + EP NP+    ++N+ AS
Sbjct: 467 KPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSAS 516


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 251/457 (54%), Gaps = 38/457 (8%)

Query: 25  SPSIYSSL--IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           SPS ++++  +  C   R L  G++VH      G      +SN L+ MY  CG  S++  
Sbjct: 473 SPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWE 532

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+ M E D+ S+N+++                             M+S +    + +E 
Sbjct: 533 IFNSMAEHDIVSWNSIMG---------------------------VMVSSHAPTAESVEV 565

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                MM++      NK T  ++LSA+S +  L LGK++H  +++ G   D  V +AL  
Sbjct: 566 FS--NMMRS--GLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMS 621

Query: 203 MYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
            Y K G ++   Q+F  M   RD VSW +MI  Y   G  +E       ++ S    +  
Sbjct: 622 CYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCC 681

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TF+ VLNACA  AA E G ++H +  R   +      SAL+ MYSKCG ++ + KVFN M
Sbjct: 682 TFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSM 741

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
            + +  SW S+I+GYA++G+ +KALE FE + ++G  PDH+ FV VL+AC+HAGLVD+GL
Sbjct: 742 SQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGL 801

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
            YF  + E HG+    +HY+C++DLL R+G+  + ++ I++MPMKP+  +W ++L  CR 
Sbjct: 802 DYFE-MMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQ 860

Query: 442 HGN---LDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             +   +DL K A+  L E+EP+NP  YV  +N YA+
Sbjct: 861 SKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAA 897



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 231/453 (50%), Gaps = 43/453 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGF-KPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           + S++ +F      L  G++VH H+  +G     + +SN L++MYAKCG I  A  +F  
Sbjct: 376 LLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRL 435

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           +  RD  S+NT+IS   + G                 F   AM++              Y
Sbjct: 436 LCARDRVSWNTIISVLDQNG-----------------FCEGAMMN--------------Y 464

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
            MM+    S SN F   S LS+ ++++ L  G+++H   ++ G D D  V +AL  MYG 
Sbjct: 465 CMMRQGCISPSN-FAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGD 523

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYF-QEGRREEGFALFSELIKSGIRPNAFTFAG 265
           CG+ +E+ +IF+ M + D+VSW +++G          E   +FS +++SG+ PN  TF  
Sbjct: 524 CGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVN 583

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RP 324
           +L+A +  +  ELGKQVH  + + G    +   +AL+  Y+K G++++ +++F+ M  R 
Sbjct: 584 LLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRR 643

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D VSW S+I+GY  NG   + ++   L++ S    D   F  VL AC     +++G++  
Sbjct: 644 DAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGME-M 702

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           H+   +  L       + ++D+ ++ GR   A  V + M  K ++F W S++ G   HG 
Sbjct: 703 HAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQK-NEFSWNSMISGYARHG- 760

Query: 445 LDLAKRAAEALFEIEPENPAT--YVTMANIYAS 475
             L ++A E +FE    N A   +VT  ++ ++
Sbjct: 761 --LGEKALE-IFEEMQRNGACPDHVTFVSVLSA 790



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 183/356 (51%), Gaps = 9/356 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           + ++S F + G L++A+++F  + +R+  +   +I G V+ +   EA+ ++  M   ++ 
Sbjct: 309 SALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF--MGTRDSF 366

Query: 156 VSNKFTLSSVLSAVSAIQC----LRLGKEIHGYIMRTGFDSDEVVWS-ALSDMYGKCGSI 210
           V N  T   +LSAV+        L  G+E+HG+I+RTG    ++  S  L +MY KCG+I
Sbjct: 367 VVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAI 426

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++A ++F  +  RD VSW  +I    Q G  E     +  + +  I P+ F     L++C
Sbjct: 427 DKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSC 486

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A       G+QVH    + G D  +  ++ALV MY  CG    S ++FN M   D+VSW 
Sbjct: 487 ASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWN 546

Query: 331 SLIAGYAQNGMPD-KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           S++     +  P  +++E F  +++SG  P+ + FV +L+A +   +++ G Q  H++  
Sbjct: 547 SIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQ-VHAVVL 605

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           KHG          ++   A+SG     E + S M  + D   W S++ G   +G+L
Sbjct: 606 KHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHL 661



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 34/323 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + +L+        LE GK+VH+ +   G      + N L+  YAK G++   + L
Sbjct: 576 PNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQL 635

Query: 84  FDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           F  M   RD  S+N+MISG+   G L+                               E 
Sbjct: 636 FSSMSGRRDAVSWNSMISGYIYNGHLQ-------------------------------ET 664

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           +D   +M +  N + +  T S VL+A +++  L  G E+H + +R+  +SD VV SAL D
Sbjct: 665 MDCVWLMMH-SNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLD 723

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG I+ A ++F+ M  ++  SW +MI  Y + G  E+   +F E+ ++G  P+  T
Sbjct: 724 MYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVT 783

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  VL+AC+     + G      M   G  P+    S ++ +  + G +   ++  N MP
Sbjct: 784 FVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMP 843

Query: 323 -RPDLVSWTSLIAGYAQNGMPDK 344
            +P+ + W +++    Q+   D+
Sbjct: 844 MKPNTLIWRTVLVACRQSKDGDR 866



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 151/312 (48%), Gaps = 23/312 (7%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNFE 153
           N +++ + KG  L  AR +FD M +R+  SWT ++SGYV      EA  +++ M  +  E
Sbjct: 95  NHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSE 154

Query: 154 NSVSNKFTLSSVLSAV--SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--GS 209
            S    FT  SVL A   +    L    ++HG + +T + S+  V +AL  MYG C  G 
Sbjct: 155 FSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGL 214

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG----IRPNAFTFAG 265
             +A+Q+FD    RD+++W A++  Y ++G     F LF  ++       +RPN  TF  
Sbjct: 215 PLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGS 274

Query: 266 VLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           ++ A +    +  +  QV   + + G     +  SALV  +++ G ++ +K +F  +   
Sbjct: 275 LITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKER 334

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV----FVGVLTACTHAGLVDKG 380
           + V+   LI G  +    ++A+  F      GT+   +V    FV +L+A     + + G
Sbjct: 335 NAVTLNGLIVGLVKQHCSEEAVGIF-----MGTRDSFVVNTDTFVVLLSAVAEFSIPEDG 389

Query: 381 LQYFHSIKEKHG 392
           L      +E HG
Sbjct: 390 LMRG---REVHG 398



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 15/254 (5%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           + +H  +++ G   D  + + L ++Y K   +  ARQ+FD M++R+ VSWT ++  Y   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 239 GRREEGFALFSELIKSG---IRPNAFTFAGVLNACADHAAEEL--GKQVHGYMTRIGYDP 293
           G  +E F +F  ++  G    RP  FTF  VL AC D   + L    QVHG +++  Y  
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 294 YSFAASALVHMYSKC--GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
            +   +AL+ MY  C  G    +++VF+  P  DL++W +L++ YA+ G        F  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 352 LLKSGT----QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVD 405
           +L   +    +P+   F  ++TA + +      L    +   K G   ++D Y  + +V 
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSG--SSSDLYVGSALVS 313

Query: 406 LLARSGRFHEAEDV 419
             AR G   EA+D+
Sbjct: 314 AFARHGMLDEAKDI 327



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
           E   +++H  + + G     F ++ LV++Y+K   +  +++VF+GM   + VSWT L++G
Sbjct: 72  EAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSG 131

Query: 336 YAQNGMPDKALEYFELLLKSGTQ---PDHIVFVGVLTACTHAG 375
           Y  +G+ D+A   F+ +L  G++   P    F  VL AC  AG
Sbjct: 132 YVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 159/449 (35%), Positives = 253/449 (56%), Gaps = 33/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+S++Q C  +R+L  G+++H  L  SG  P   ++  L+D+YA CG +           
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVG---------- 114

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                 AR LFD MP+R+ F W  +I  Y R      A+ LYR 
Sbjct: 115 ---------------------HARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRG 153

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M ++     N FT    L A +A+  L  G+E+H  ++ T +  D  V + L DMY KCG
Sbjct: 154 MVDYGVEPDN-FTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCG 212

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +++AR +FD++  RD V W +MI  Y Q GR  E  +L  ++  +G+ P   T    ++
Sbjct: 213 CVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTIS 272

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           A AD AA   G+++HG+  R G+D      ++LV MY+K G V+ ++ +F  + + +LVS
Sbjct: 273 AAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVS 332

Query: 329 WTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           W ++I GY  +G  D+AL+ F ++ +++   PD+I FVGVL+AC H G+V +  ++F  +
Sbjct: 333 WNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLM 392

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            + + +  T  H+ C+VD+L  +GRF EA D+I  MPM+PD  +W +LL GC+IH N++L
Sbjct: 393 VDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVEL 452

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            + A + L E+EPE+   YV ++NIYA +
Sbjct: 453 GELALQKLIELEPEDAGNYVLLSNIYAQS 481



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 97/182 (53%), Gaps = 7/182 (3%)

Query: 258 PNAFT-FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           PN++  +  VL +C    +   G+Q+HG +   G  P +  A+ LV +Y+ CG V ++++
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F+GMP+ ++  W  LI  YA++G  + A++ +  ++  G +PD+  +   L AC     
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLD 178

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           ++ G +    +   H   +  D + C  +VD+ A+ G   +A  V  ++ ++ D  +W S
Sbjct: 179 LETGREVHERVLGTH---WGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVR-DSVVWNS 234

Query: 435 LL 436
           ++
Sbjct: 235 MI 236


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 245/449 (54%), Gaps = 41/449 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  LI+ C     L+EG+ VH      G    V++ + L+  Y KC  I  A+ +FDE+ 
Sbjct: 108 YPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIP 167

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           ER+V S+  M++G+   G LE A+ +F+ MP+R+  SW AMISG  +      A DL   
Sbjct: 168 ERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGK------AGDLSGA 221

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
            + F+  V                                  + + V ++ + D Y K G
Sbjct: 222 RKVFDEMV----------------------------------ERNVVSFTVMIDGYAKVG 247

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  AR +FD+  ++DVV+W+A+I  Y +  +  E   +F E++   ++P+ F    +++
Sbjct: 248 DMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMS 307

Query: 269 ACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           AC+     +L K V  Y+++   D   +   +AL+ M++KCGN+E + K+F  MP  DL+
Sbjct: 308 ACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLI 367

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
              SLI G + +G   +A+E F  +L  G  PD + F  +LTAC+  GL++ G  +F ++
Sbjct: 368 PCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTM 427

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
           K K+ +  + +HYAC+VDLL+R+G+   A D++  MP+KP    W +LLG C++HG+++L
Sbjct: 428 KNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVEL 487

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            +  A  L E+EPE   +YV ++NIYASA
Sbjct: 488 REEVANRLLELEPEKAGSYVLLSNIYASA 516



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 172/337 (51%), Gaps = 9/337 (2%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
           S+  + ++F+ +     F +  ++  + + +Q I+   L+  M+  E ++S+K+T   ++
Sbjct: 53  SVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLI 112

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
              S    L+ G+ +HG  +R G   D  V S+L   YGKC  I  AR++FD++ +R+VV
Sbjct: 113 KVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVV 172

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SWTAM+  Y   G  E    +F  + +  + P+       L    D +     ++V   M
Sbjct: 173 SWTAMVAGYASVGDLENAKRVFERMPERNL-PSWNAMISGLGKAGDLSG---ARKVFDEM 228

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
             +  +  SF  + ++  Y+K G++ +++ +F+  P  D+V+W++LI+GY++N  P++A+
Sbjct: 229 --VERNVVSF--TVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAV 284

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           + F  ++    +PD  + V +++AC+  G  D        + +    T  A   A ++D+
Sbjct: 285 KIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDM 344

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            A+ G   +A  +   MP + D     SL+ G  IHG
Sbjct: 345 HAKCGNMEKAVKLFQDMPSR-DLIPCCSLIQGLSIHG 380


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 248/444 (55%), Gaps = 32/444 (7%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L+Q   +NRA  EG   H+ +   G +     SN L++MY+KC                 
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKC----------------- 95

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                         G +E AR LFDEMP R   SW  M+  + +     +AL L+  MQ 
Sbjct: 96  --------------GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQK 141

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            E    ++FT+SSV+ A +A  C+   K++HG+ ++T  DS+  V +AL D+Y KCG + 
Sbjct: 142 -EGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 200

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A  +F+ M +R  V+W++M+  Y Q    EE   LF      G+  N FT +  L+ACA
Sbjct: 201 DASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACA 260

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
             AA   GKQV   + + G     F  S+L+ MY+KCG +E +  VF+ +   ++V W +
Sbjct: 261 ARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNA 320

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +++G++++    +A+ YFE + + G  P+ I ++ VLTAC+H GLV+KG +YF  +   H
Sbjct: 321 MLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVH 380

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            ++    HY+C+VD+L R+G  HEA+D+I +MP      +W SLL  CRI+ NL+ A+ A
Sbjct: 381 NVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVA 440

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           A+ LFEIEP N   +V ++NIYA+
Sbjct: 441 AKHLFEIEPHNAGNHVLLSNIYAA 464



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 146/307 (47%), Gaps = 34/307 (11%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           SS++  C     + E K++H     +     VF+   LLD+YAKCG + DA  +F+ M E
Sbjct: 152 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPE 211

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R   ++++M++G+ +    E+A  LF                         +A+ L    
Sbjct: 212 RSDVTWSSMVAGYVQNELYEEALVLFHRA----------------------QAMGLEH-- 247

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   N+FT+SS LSA +A   L  GK++   + +TG  S+  V S+L DMY KCG 
Sbjct: 248 --------NQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGI 299

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I EA  +F  + +++VV W AM+  + +  R  E    F ++ + GI PN  T+  VL A
Sbjct: 300 IEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTA 359

Query: 270 CADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           C+     E G++    M R+    P     S +V +  + G +  +K + + MP     S
Sbjct: 360 CSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATAS 419

Query: 329 -WTSLIA 334
            W SL+A
Sbjct: 420 MWGSLLA 426



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 3/190 (1%)

Query: 250 ELIKSGIRPNAFT-FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           EL+  GIR    +    +L + A + A   G   H  + R+G    +  ++ L++MYSKC
Sbjct: 36  ELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKC 95

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G VE+++K+F+ MP   LVSW +++  + QNG  +KAL  F  + K G          V+
Sbjct: 96  GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVV 155

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC     V +  Q  H    K  L         ++D+ A+ G   +A  V   MP + D
Sbjct: 156 CACAAKCCVFECKQ-LHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSD 214

Query: 429 KFLWASLLGG 438
              W+S++ G
Sbjct: 215 -VTWSSMVAG 223


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 159/476 (33%), Positives = 258/476 (54%), Gaps = 46/476 (9%)

Query: 11  LKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           ++EAL+   ++    + P+  I  + +  C +      G ++H+ +  +GF+  +F+++ 
Sbjct: 82  VREALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSA 141

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+YAKC  I DA                               + +FD M + D  SW
Sbjct: 142 LVDLYAKCDAIVDA-------------------------------KRVFDGMEKHDQVSW 170

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI-----QCLRLGKEI 181
           T++ISG+ +  +  EA+  ++ M   +    N  T  SV+SA + +     QC  L    
Sbjct: 171 TSIISGFSKNGRGKEAILFFKEMLGSQIK-PNCVTYVSVISACTGLETIFDQCALL---- 225

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H ++++ GF     V S L D Y KCG I++A  +F   ++RD + + +MI  Y Q    
Sbjct: 226 HAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFG 285

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   LF E+  +G+ P   T   +LNAC      + G+QVH  + ++G +   F  SAL
Sbjct: 286 EEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSAL 345

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE-LLLKSGTQPD 360
           + MYSKCG+++ ++ VF+     + V WTS+I GYAQ+G   + L  FE L+ + G  PD
Sbjct: 346 LDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPD 405

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           HI F  VLTAC HAG +DKG+ YF+ ++  +GL    D YAC+VDL  R+G   +A++++
Sbjct: 406 HICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELM 465

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +P +P+  +W S L  C+++G  +L + AA+ LF++EP + A YV MA+IYA A
Sbjct: 466 EAIPCEPNSVMWGSFLSSCKLYGEAELGREAADKLFKMEPCSTAPYVAMASIYAQA 521



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 195/400 (48%), Gaps = 50/400 (12%)

Query: 10  RLKEAL----QILHQISHPSPSIYSSLIQFCRQNRAL-EEGKKVHSHLKSSGFKPGVFIS 64
           R KEA+    ++L     P+   Y S+I  C     + ++   +H+H+   GF    F+ 
Sbjct: 182 RGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVV 241

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           +CL+D Y+KCG I  A  LF    ERD   +N+MISG+++        NLF E       
Sbjct: 242 SCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQ--------NLFGE------- 286

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHG 183
                           EAL L+  M+N  N ++    TL+S+L+A  ++  L+ G+++H 
Sbjct: 287 ----------------EALKLFVEMRN--NGLNPTDHTLTSILNACGSLTILQQGRQVHS 328

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            + + G +S+  V SAL DMY KCGSI+EAR +FD+ V+++ V WT+MI  Y Q GR  E
Sbjct: 329 LVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPE 388

Query: 244 GFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASAL 301
           G  LF  L+ + G  P+   F  VL AC      + G      M R  G  P     + L
Sbjct: 389 GLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACL 448

Query: 302 VHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK---SGT 357
           V +Y + G++  +K++   +P  P+ V W S ++     G  +   E  + L K     T
Sbjct: 449 VDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAADKLFKMEPCST 508

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            P    +V + +    AGL  + ++    +K+K GL  +A
Sbjct: 509 AP----YVAMASIYAQAGLWSEVVEIRKLMKQK-GLRKSA 543


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 255/468 (54%), Gaps = 42/468 (8%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R++E L   +QI+         L+  C++  AL +GK +H +L   G + G ++   LLD
Sbjct: 193 RMREELIEANQIT------LGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLD 246

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           +YAKCG + DA                               R++FDE+   D  SWTAM
Sbjct: 247 LYAKCGVVRDA-------------------------------RSVFDELHGIDIVSWTAM 275

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           I GY +   P EAL L+  +Q  + +V  N  T++SV S+ S +  L LG+ IHG  ++ 
Sbjct: 276 IVGYTQNGCPEEALKLF--LQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKL 333

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G   D +V ++L D Y KC    +AR +F+ + DRDVV+W ++I  + Q G   E   LF
Sbjct: 334 G-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELF 392

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY-DPYSFAASALVHMYSK 307
            ++    + P+A T   VL+ACA   A ++G   H Y  + G      +  +AL+  Y+K
Sbjct: 393 HQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAK 452

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+ E+++ +F+GM +   V+W+++I+GY   G    +L  F  +LK+  +P+  +F  +
Sbjct: 453 CGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSI 512

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC+H G++ +G + F  I + + L  +  HY C+VDLLAR+GR  EA D I KMP++P
Sbjct: 513 LSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQP 572

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           D  L+ + L GC +H   DL + A + + E+ P +   YV M N+YAS
Sbjct: 573 DVSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGDACYYVLMCNLYAS 620



 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 212/419 (50%), Gaps = 39/419 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++S +++ C ++R  +EG+KVH  +   G  P  F+   L+DMYAKCG I  ++++FDE 
Sbjct: 105 VFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSRSVFDEN 163

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            +R+V S+++MI+G+ +    +    LF+ M +                 + IEA     
Sbjct: 164 LDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMRE-----------------ELIEA----- 201

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
                     N+ TL  ++ A   +  L  GK +HGY+++ G +    + +AL D+Y KC
Sbjct: 202 ----------NQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKC 251

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G + +AR +FD++   D+VSWTAMI  Y Q G  EE   LF +  +  + PN  T A V 
Sbjct: 252 GVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVF 311

Query: 268 NACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++C+      LG+ +HG   ++G  DP     ++LV  Y+KC    +++ VF  +   D+
Sbjct: 312 SSCSQLLNLNLGRSIHGLSIKLGSRDP--IVTNSLVDFYAKCQMNRDARYVFETISDRDV 369

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V+W S+I+ ++QNG   +ALE F  +      PD +  V VL+AC     +  G   FH+
Sbjct: 370 VAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVG-SSFHA 428

Query: 387 IKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
              K GL  +  +    ++   A+ G    A  +   M  K     W++++ G  I GN
Sbjct: 429 YAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQK-STVTWSAMISGYGIQGN 486



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 163/307 (53%), Gaps = 6/307 (1%)

Query: 71  YAKCGNISDAQT----LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           Y+ C NI+        L  +   RD+     ++S +   G L+ AR +FD +P  D  SW
Sbjct: 12  YSLCDNINTLMEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSW 71

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             +I  Y   ++  + +  Y  M+       N    S VL A S  +    G+++H  I+
Sbjct: 72  KVIIRWYFLNSEFRDIVGFYNRMRVCLKECDN-VVFSHVLKACSESRNFDEGRKVHCQIV 130

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           + G + D  V++ L DMY KCG I  +R +FD+ +DR+V SW++MI  Y Q    ++G  
Sbjct: 131 KFG-NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLV 189

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF+ + +  I  N  T   +++AC    A   GK +HGY+ + G +  S+  +AL+ +Y+
Sbjct: 190 LFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYA 249

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG V +++ VF+ +   D+VSWT++I GY QNG P++AL+ F    +    P+ +    
Sbjct: 250 KCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIAS 309

Query: 367 VLTACTH 373
           V ++C+ 
Sbjct: 310 VFSSCSQ 316



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           E+H Y++  G   D    + L  +YG  G ++ AR +FD +   D +SW  +I  YF   
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
              +    ++ +       +   F+ VL AC++    + G++VH  + + G +P SF  +
Sbjct: 83  EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFT 141

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            LV MY+KCG +E S+ VF+     ++ SW+S+IAGY QN +    L  F  + +   + 
Sbjct: 142 GLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEA 201

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           + I    ++ AC   G + +G ++ H    K G+   +     ++DL A+ G   +A  V
Sbjct: 202 NQITLGILVHACKKLGALHQG-KWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSV 260

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY---VTMANIYAS 475
             ++    D   W +++ G   +G        A  LF ++ E  A     VT+A++++S
Sbjct: 261 FDELH-GIDIVSWTAMIVGYTQNG----CPEEALKLF-LQKEQVAVLPNDVTIASVFSS 313


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 227/381 (59%), Gaps = 2/381 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++++ + K   ++ A  +F    +R++ +W+AMI+GY +  +   A  ++  M +   S
Sbjct: 264 NSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFS 323

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
              +FT   +L+A S +  L +GK+ HG +++ GF+    V SAL DMY KCG   +A+ 
Sbjct: 324 -PTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKD 382

Query: 216 IFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            F ++ D  DVV WTAMI  + Q G  EE   L+S + K G+ P+  T   VL ACA  A
Sbjct: 383 GFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLA 442

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A E GKQ+H  + + G+       +AL  MYSKCGN+E+S  VF  MP  D++SW S+I+
Sbjct: 443 ALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIIS 502

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G++Q+G    AL+ FE +   G  PDHI F+ VL AC+H GLVD+G  YF ++ + +GL 
Sbjct: 503 GFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLI 562

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              DHYACIVD+L+R+G+  EA+D I  + +     LW  +LG CR   + D+   A E 
Sbjct: 563 PKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQ 622

Query: 455 LFEIEPENPATYVTMANIYAS 475
           L E+  E+ + Y+ ++NIYA+
Sbjct: 623 LMELGTEDSSAYILLSNIYAA 643



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 211/438 (48%), Gaps = 41/438 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHS---HLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           P+P  ++++     +  +   G   H+    L SS     VF+S  LL+MY K G ISDA
Sbjct: 118 PTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDA 177

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
                                          R +FD+MP R+  SW AM+SGY       
Sbjct: 178 -------------------------------RRVFDQMPHRNAVSWAAMVSGYATGKCSE 206

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           EA +L+R+M        N+F  ++VLSAVS    L +G ++HG +++ G      V ++L
Sbjct: 207 EAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSL 266

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MY K   ++ A  +F    +R+ ++W+AMI  Y Q G  +    +F ++  +G  P  
Sbjct: 267 VTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTE 326

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           FTF G+LNA +D  A  +GKQ HG M ++G++   +  SALV MY+KCG   ++K  F+ 
Sbjct: 327 FTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQ 386

Query: 321 M-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           +    D+V WT++I G+ QNG  ++AL  +  + K G  P ++    VL AC     ++ 
Sbjct: 387 LYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEP 446

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G Q  H+   K G          +  + ++ G   ++  V  +MP + D   W S++ G 
Sbjct: 447 GKQ-LHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDR-DIISWNSIISGF 504

Query: 440 RIHGNLDLAKRAAEALFE 457
             HG      R A  LFE
Sbjct: 505 SQHGR----GRDALDLFE 518



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 21/295 (7%)

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS----INEARQIFDKMVD- 222
           A S+++  R G  +HG+ +++G  S   V ++L   Y  C      +  A  +F  +   
Sbjct: 23  AASSVRTRRAGDALHGWALKSGAASHTPVSNSLITFY--CSPPRPLLGAAFAVFADIPAG 80

Query: 223 -RDVVSWTAMIGRYFQEGRREEGFAL--FSELIKS--GIRPNAFTFAGVLNACADHAAEE 277
            RDV SW +++       R +   AL  F  ++ S   + P   +FA V  A A   +  
Sbjct: 81  LRDVASWNSLLNPL---SRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSAS 137

Query: 278 LGKQVHGYMTRIGYDPYS---FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
            G   H +  ++     S   F ++AL++MY K G + ++++VF+ MP  + VSW ++++
Sbjct: 138 AGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVS 197

Query: 335 GYAQNGMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           GYA     ++A E F L+L+    + +  V   VL+A +    +  G+Q  H +  K GL
Sbjct: 198 GYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQ-LHGLVLKDGL 256

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
                    +V + A++     A  V      + +   W++++ G   +G  D A
Sbjct: 257 VGFVSVENSLVTMYAKAECMDAAMAVFGSSKER-NSITWSAMITGYAQNGEADCA 310


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 232/432 (53%), Gaps = 41/432 (9%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           + VHSH+   G     F+ N L+D Y+K G  SDA+ +FDEM ERDV S+NT ++   + 
Sbjct: 25  RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE 84

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G L   R LFDEMP++D  SW  ++ GY +  +   A +L++ M                
Sbjct: 85  GELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMP--------------- 129

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
                                    + + V WS +   Y K G +  AR IFDKM  +++
Sbjct: 130 -------------------------ERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 164

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V+WT M+    Q+G  +E   LF+++ ++ +  +      +L ACA+  +  LGK++H Y
Sbjct: 165 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 224

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG-MPRPDLVSWTSLIAGYAQNGMPDK 344
           + +      +   +AL+ M+ KCG V  +  VF+    + D VSW S+I G+A +G  DK
Sbjct: 225 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 284

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           ALE F  + + G  PD +  + VL+ACTH G VD+G ++F +++  +G+    +HY C++
Sbjct: 285 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 344

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           DLL R G   EA D+I  MP +P++ +W SLL  CR+H N++ A+ A   L +++P N  
Sbjct: 345 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 404

Query: 465 TYVTMANIYASA 476
            Y  ++NIYA A
Sbjct: 405 NYAVLSNIYAEA 416



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 6   CNQRRL-KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           C Q+ L  EA ++  Q+   S  +      S++  C ++ +L  GK++H +++       
Sbjct: 174 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 233

Query: 61  VFISNCLLDMYAKCGNISDAQTLFD-EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             + N L+DM+ KCG ++ A  +FD E  ++D  S+N++I GF   G  ++A  LF +M 
Sbjct: 234 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 293

Query: 120 QR 121
           Q+
Sbjct: 294 QQ 295


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 256/465 (55%), Gaps = 40/465 (8%)

Query: 18  LHQISH-------PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LH + H       P+P +Y + I  C Q++ L++ +K+H+HL SS F    F+ N L+ +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHL 95

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y KCG                               S+ +A  +FD+M  +D  SWT++I
Sbjct: 96  YCKCG-------------------------------SVVEAHKVFDKMRNKDMVSWTSLI 124

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +GY + + P EA+ L   M        N FT +S+L AV A     +G +IH   ++  +
Sbjct: 125 AGYAQNDMPAEAIGLLPGMLKGRFK-PNGFTFASLLKAVGAYADSGIGGQIHALAVKCDW 183

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             D  V SAL DMY +CG ++ A  +FDK+  ++ VSW A+I  + ++G  E    +F+E
Sbjct: 184 HEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAE 243

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + ++G     FT++ + +A A   A E GK VH +M +      +F  + ++ MY+K G+
Sbjct: 244 MQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGS 303

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           + +++KVF  +   DLV+W S++  +AQ G+  +A+ +FE + KSG   + I F+ +LTA
Sbjct: 304 MIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTA 363

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H GLV +G  YF  IKE + L    +HY  +VDLL R+G  + A   I KMPM+P   
Sbjct: 364 CSHGGLVKEGKHYFDMIKE-YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAA 422

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +W +LL  CR+H N  + + AA+ +F+++P++    V + NIYAS
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYAS 467


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 249/462 (53%), Gaps = 34/462 (7%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +L   + P+   +   I+ C        GK++H H+  +G     F+   L+ MY KC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS--WTAMISGYV 134
           I                               + AR LFDE PQ    +  + +++SGY 
Sbjct: 61  I-------------------------------DNARKLFDENPQSRKLTVCYNSLLSGYA 89

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
             ++  + + L+  M+     + N  T+  ++        L LG  +HG+ ++ G D D 
Sbjct: 90  LNSRVKDVVVLFCEMRELGVEI-NGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDS 148

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V + L  MY K G I+  R++FD+M  + +++W AMI  Y Q G       L+ E+   
Sbjct: 149 SVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESK 208

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           G  P+  T  GVL++CA   A  +GK+V   M   G+    F  +ALV+MY++CGN++ +
Sbjct: 209 GFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKA 268

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + +F+GMP   +VSWT++I GY  +G  + A+  F+ +++ G +PD   FV VL+AC+HA
Sbjct: 269 RDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHA 328

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GL +KGL YF  ++ K+GL   A+HY+C+VDLL R+GR +EA ++I  M ++ D  LW +
Sbjct: 329 GLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGA 388

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LLG C+IH N++LA+ A E + E+EP N   YV ++N+Y  A
Sbjct: 389 LLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEA 430


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 262/491 (53%), Gaps = 53/491 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   +Y  LI+      A   G   H+H+   G     F+ N ++DMYA+ G I  A+ +
Sbjct: 98  PDAFVYPILIK-----SAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKV 152

Query: 84  FDEMQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
           FDE+   ER V  +N M+SG+ K  S  QA+ LFD MP+R+  +WTAM++GY +  + +E
Sbjct: 153 FDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKV-KDLE 211

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW---- 197
           A   Y       + VS    LS       A + LRL  E+    +  G + DE  W    
Sbjct: 212 AARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM----VNAGIEPDETTWVTVI 267

Query: 198 -------------------------------SALSDMYGKCGSINEARQIFDKMVDRDVV 226
                                          +AL DMY K G ++ AR++F+ M  R+VV
Sbjct: 268 SACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVV 327

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           +W +MI  Y Q G+      LF E+I +  + P+  T   V++AC    A ELG  V  +
Sbjct: 328 TWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRF 387

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           +T           +A++ MYS+CG++E++K+VF  M   D+VS+ +LI+G+A +G   +A
Sbjct: 388 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 447

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           +     + + G +PD + F+GVLTAC+HAGL+++G + F SIK+        DHYAC+VD
Sbjct: 448 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDP-----AIDHYACMVD 502

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465
           LL R G   +A+  + +MPM+P   ++ SLL   RIH  ++L + AA  LFE+EP+N   
Sbjct: 503 LLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGN 562

Query: 466 YVTMANIYASA 476
           ++ ++NIYASA
Sbjct: 563 FILLSNIYASA 573



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 177/400 (44%), Gaps = 81/400 (20%)

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           LF+     + F +T+M+  Y       + + +Y  MQ       + F    ++ +     
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGC-GVRPDAFVYPILIKSAGT-- 112

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD----------- 222
               G   H ++++ G  SD  V +A+ DMY + G I  AR++FD++ D           
Sbjct: 113 ---GGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAM 169

Query: 223 ----------------------RDVVSWTAMIG------------RYF------------ 236
                                 R+V++WTAM+             RYF            
Sbjct: 170 VSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN 229

Query: 237 -------QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA----AEELGKQVHGY 285
                  Q G  EE   LF E++ +GI P+  T+  V++AC+       A  L + +H  
Sbjct: 230 AMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH-- 287

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
             RI  +   F  +AL+ MY+K G++++++K+FN MP  ++V+W S+IAGYAQNG    A
Sbjct: 288 QKRIQLN--CFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMA 345

Query: 346 LEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           +E F E++      PD +  V V++AC H G ++ G      + E       + H A I 
Sbjct: 346 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 405

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            + +R G   +A+ V  +M  + D   + +L+ G   HG+
Sbjct: 406 -MYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAHGH 443


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 240/383 (62%), Gaps = 5/383 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
           N +I+ ++K G L++AR +F  + + RD  SW +M+  Y+++ +  +AL+LY  M     
Sbjct: 177 NALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEM-TVRG 235

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS-INEA 213
            + + FTL+SVL+A + +Q L  G + H  ++++G+  +  V S L D+Y KCG  + + 
Sbjct: 236 LIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDC 295

Query: 214 RQIFDKMVDRDVVSWTAMIGRY-FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           R++FD++ + D+V W  MI  Y   E   +E    F +L   G RP+  +   V++AC++
Sbjct: 296 RKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSN 355

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
            ++   G+QVHG   ++       + + AL+ MYSKCGN+ ++K +F+ MP  + VS+ S
Sbjct: 356 MSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNS 415

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +IAGYAQ+GM  ++L  F+ +L+ G  P +I F+ VL AC H G V+ G  YF+ +K+K 
Sbjct: 416 MIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKF 475

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           G+   A H++C++DLL R+G+  EAE +I  +P  P  F W++LLG CRIHGN++LA +A
Sbjct: 476 GIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKA 535

Query: 452 AEALFEIEPENPATYVTMANIYA 474
           A  L +++P N A YV +ANIY+
Sbjct: 536 ANRLLQLDPLNAAPYVMLANIYS 558



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 230/456 (50%), Gaps = 30/456 (6%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +   ++ C  +R L  GK +H+    S      ++SN  L +Y+KC  +S A+ +FD   
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
           + +V S+NT+IS + K   +E A  LFDEMPQ D+ S+  +I+ Y R      A  L+  
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M + F +   + FTLS +++A      + L +++H   + TG DS   V +AL   Y K 
Sbjct: 131 MREAFLD--MDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKN 186

Query: 208 GSINEARQIFDKMV-DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           G + EAR+IF  +  DRD VSW +M+  Y Q     +   L+ E+   G+  + FT A V
Sbjct: 187 GFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASV 246

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN-VENSKKVFNGMPRPD 325
           L A  +      G Q H  + + GY   S   S L+ +YSKCG  + + +KVF+ +  PD
Sbjct: 247 LTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPD 306

Query: 326 LVSWTSLIAGYA-QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           LV W ++I+GY+    + D+ALE F  L   G +PD    V V++AC++     +G    
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQG---- 362

Query: 385 HSIKEKHGLTYTADHYA-------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
              ++ HGL    D  +        ++ + ++ G   +A+ +   MP + +   + S++ 
Sbjct: 363 ---RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIA 418

Query: 438 GCRIHG----NLDLAKRAAEALFEIEPENPATYVTM 469
           G   HG    +L L +R  E  F   P N  T++++
Sbjct: 419 GYAQHGMGFQSLHLFQRMLEMGF--TPTN-ITFISV 451


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 237/443 (53%), Gaps = 34/443 (7%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCS 94
           C   R    G ++H+     G+ PG  F+S   +DMY                       
Sbjct: 123 CAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMY----------------------- 159

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
                    K G L  AR LF+EMP R+  +W A+++  V   +P+E    Y  ++    
Sbjct: 160 --------FKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLRE-AG 210

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
            + N  ++ +  +A +    L LG++ HG+++  GFD D  V +A+ D YGKC    +AR
Sbjct: 211 GMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKAR 270

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            +FD M  R+ VSW +MI  Y Q G  E+  A++     +G  P  F  + VL  CA   
Sbjct: 271 AVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLL 330

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
               G+ +H    R   D   F ASALV MY KCG VE++++VF  MP  +LV+W ++I 
Sbjct: 331 GLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIG 390

Query: 335 GYAQNGMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           GYA  G    AL  F+ +++S GT P+HI  V V+TAC+  GL   G + F +++E+ G+
Sbjct: 391 GYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGV 450

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
               +HYAC+VDLL R+G    A ++I +MPM+P   +W +LLG C++HG  +L + A+E
Sbjct: 451 EPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASE 510

Query: 454 ALFEIEPENPATYVTMANIYASA 476
            LFE++P++   +V ++N+ ASA
Sbjct: 511 KLFELDPQDSGNHVLLSNMLASA 533



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 175/354 (49%), Gaps = 13/354 (3%)

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI--QCLRLGKEIH 182
           S+TA ISG  ++ +P+ AL  +  M        N FT  S   A +    +C  +G +IH
Sbjct: 78  SFTAFISGAAQHARPLAALSAFAAMLRV-GLRPNDFTFPSAFKAAACAPPRCSTVGPQIH 136

Query: 183 GYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
              +R G+   D  V  A  DMY K G +  AR++F++M +R+V++W A++     +GR 
Sbjct: 137 ALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRP 196

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
            E F  +  L ++G  PN  +     NACA      LG+Q HG++   G+D     ++A+
Sbjct: 197 LETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAM 256

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V  Y KC     ++ VF+GM   + VSW S+I  YAQ+G  + AL  +     +G +P  
Sbjct: 257 VDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTD 316

Query: 362 IVFVGVLTACTHAGLVDKGLQY---FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            +   VLT C  AGL+  GL +    H++  +  +       + +VD+  + G   +AE 
Sbjct: 317 FMVSSVLTTC--AGLL--GLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQ 372

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
           V   MP + +   W +++GG    G+   A    +A+      +P  ++T+ N+
Sbjct: 373 VFLDMPER-NLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSP-NHITLVNV 424



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 119/286 (41%), Gaps = 6/286 (2%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           L +   A  + +  RLG+  H   +R         + + L ++Y K      A       
Sbjct: 12  LGAAFEAAISSRSPRLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASD 71

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN--ACADHAAEEL 278
            +  VVS+TA I    Q  R     + F+ +++ G+RPN FTF       ACA      +
Sbjct: 72  PNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTV 131

Query: 279 GKQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           G Q+H    R GY P   F + A + MY K G +  ++++F  MP  ++++W +++    
Sbjct: 132 GPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAV 191

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +G P +  + +  L ++G  P+ +       AC  A  +  G Q FH      G     
Sbjct: 192 IDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQ-FHGFVVTCGFDMDV 250

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                +VD   +     +A  V   M ++ +   W S++     HG
Sbjct: 251 SVSNAMVDFYGKCRCAGKARAVFDGMRVR-NSVSWCSMIVAYAQHG 295



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 33/223 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + SS++  C     L  G+ +H+    S     +F+++ L+DMY KCG + DA+ +
Sbjct: 314 PTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQV 373

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +M ER++ ++N MI G+   G  + A  +FD M +    S                  
Sbjct: 374 FLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTS------------------ 415

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSD 202
                         N  TL +V++A S     + G E+   +  R G +     ++ + D
Sbjct: 416 -------------PNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVD 462

Query: 203 MYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEG 244
           + G+ G    A +I  +M  R  +S W A++G     G+ E G
Sbjct: 463 LLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELG 505



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 14/198 (7%)

Query: 256 IRPNAFTFAGVLNACADHA----AEELGKQVHGYMTRI---GYDPYSFAASALVHMYSKC 308
           +RP A     +L A  + A    +  LG+  H    R+   G  P  F  + LV++YSK 
Sbjct: 1   MRPAAAADPQLLGAAFEAAISSRSPRLGRAAHARALRLLSPGLPP--FICAHLVNLYSKL 58

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
                +       P P +VS+T+ I+G AQ+  P  AL  F  +L+ G +P+   F    
Sbjct: 59  DLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAF 118

Query: 369 --TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC-IVDLLARSGRFHEAEDVISKMPM 425
              AC        G Q  H++  + G        +C  +D+  ++G    A  +  +MP 
Sbjct: 119 KAAACAPPRCSTVGPQ-IHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPN 177

Query: 426 KPDKFLWASLLGGCRIHG 443
           + +   W +++    I G
Sbjct: 178 R-NVIAWNAVMTNAVIDG 194


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 255/465 (54%), Gaps = 40/465 (8%)

Query: 18  LHQISH-------PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LH + H       P+P +Y + I  C Q++ L++ +K+H HL SS F+   F+ N L+ +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y KCG                               S+ +A  +FD+M ++D  SWT++I
Sbjct: 96  YCKCG-------------------------------SVVEAHKVFDKMRKKDMVSWTSLI 124

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +GY + + P EA+ L   M        N FT +S+L A  A     +G +IH   ++  +
Sbjct: 125 AGYAQNDMPAEAIGLLPGMLKGRFK-PNGFTFASLLKAAGAYADSGIGGQIHALAVKCDW 183

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             D  V SAL DMY +CG ++ A  +FDK+  ++ VSW A+I  + ++G  E    +F+E
Sbjct: 184 HEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAE 243

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + ++G     FT++ + +  A   A E GK VH +M +      +F  + ++ MY+K G+
Sbjct: 244 MQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGS 303

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           + +++KVF  +   DLV+W S++  +AQ G+  +A+ +FE + KSG   + I F+ +LTA
Sbjct: 304 MIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTA 363

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H GLV +G  YF  IKE + L    +HY  +VDLL R+G  + A   I KMPM+P   
Sbjct: 364 CSHGGLVKEGKHYFDMIKE-YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAA 422

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +W +LL  CR+H N  + + AA+ +F+++P++    V + NIYAS
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYAS 467


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 246/454 (54%), Gaps = 41/454 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+I+ C       EGK +H      G    +++   L+DMY KCG I+DA+ +
Sbjct: 126 PDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKV 185

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M +R+V S+  M+ G+   G + +AR LFDEMP R+  SW +M+ G+V+      A 
Sbjct: 186 FDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGAR 245

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  M                                         + + V ++ + D 
Sbjct: 246 GVFDAMP----------------------------------------EKNVVSFTTMIDG 265

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G +  AR +FD  +++DVV+W+A+I  Y Q G   +   +F E+    ++P+ F  
Sbjct: 266 YAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFIL 325

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +++A A     EL + V  Y+++I  D       +AL+ M +KCGN+E + K+F+  P
Sbjct: 326 VSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKP 385

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D+V + S+I G + +G  ++A+  F  +L  G  PD + F  +LTAC+ AGLVD+G  
Sbjct: 386 RRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRN 445

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF S+K+K+ ++   DHYAC+VDLL+RSG   +A ++I  +P +P    W +LLG C+++
Sbjct: 446 YFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLY 505

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           G+ +L +  A  LFE+EP N A YV +++IYA+A
Sbjct: 506 GDSELGEIVANRLFELEPLNAANYVLLSDIYAAA 539



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 155/328 (47%), Gaps = 19/328 (5%)

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGK---EIHGYIMRTGFDSDE-VVWSALSDMYGKCGSI 210
           S S+ F L S  S  + ++  +  +   ++H  I+  G + D  +V+  +S  +    ++
Sbjct: 19  SHSSPFRLHSAASITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTL 78

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           + A  +F +++    V W  +I  + Q+       + F+ +   G  P++FT+  V+ AC
Sbjct: 79  SYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKAC 138

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +       GK +HG   R G D   +  ++L+ MY KCG + +++KVF+GM   ++VSWT
Sbjct: 139 SGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWT 198

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +++ GY   G   +A + F+ +           +  +L      G +      F ++ EK
Sbjct: 199 AMLVGYVAVGDVVEARKLFDEMPHRNVAS----WNSMLQGFVKMGDLSGARGVFDAMPEK 254

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           + +++T      ++D  A++G    A   +    ++ D   W++L+ G   +G   L  +
Sbjct: 255 NVVSFTT-----MIDGYAKAGDMAAAR-FLFDCSLEKDVVAWSALISGYVQNG---LPNQ 305

Query: 451 AAEALFEIEPEN--PATYVTMANIYASA 476
           A     E+E  N  P  ++ ++ + ASA
Sbjct: 306 ALRVFLEMELMNVKPDEFILVSLMSASA 333


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 227/416 (54%), Gaps = 65/416 (15%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+  Y +C  I +AQ +F+ M +RDV S+NTM+SG  + G + +AR LFD  P RD F
Sbjct: 194 NALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVF 253

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           +WTA++SGY +     EA  ++  M        N  + +++++A    + +   KE+   
Sbjct: 254 TWTAVVSGYAQNGMLEEAKRVFDAMPE-----KNAVSWNAMMAAYVQRRMMEEAKEL--- 305

Query: 185 IMRTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                FD+    +   W+ +   Y + G ++EAR IFD M  +D VSW AM+  Y Q G 
Sbjct: 306 -----FDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGF 360

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF E+ +                CA                             
Sbjct: 361 SEETLQLFKEMGR----------------CA----------------------------- 375

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
              MY KCGN+E +   F  M   D+VSW ++IAGYA++G   +ALE F+ + K+ T+PD
Sbjct: 376 ---MYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPD 432

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I  VGVL AC+H+GLV+KG+ YF+S+    G+T   +HY C++DLL R+GR  EA +++
Sbjct: 433 DITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLM 492

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             MP +PD  +W +LLG  RIH N +L + AAE +FE+EPEN   YV ++NIYAS+
Sbjct: 493 KDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASS 548



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 184/414 (44%), Gaps = 67/414 (16%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGG-------------- 106
           V   N  +  + + G + DA+ LF  M  R   +YN M+ G+   G              
Sbjct: 35  VIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPR 94

Query: 107 -----------------SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                            SL  AR LFDEMP +D+ S+  MIS +  +        L  + 
Sbjct: 95  PDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHG-------LVSLA 147

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +++ +    K  +S      + I+  R+ +    +  RT +D+  + W+AL   Y +C  
Sbjct: 148 RHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDA--ISWNALMAGYVQCSQ 205

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I EA+++F++M  RDVVSW  M+  + + G   E   LF     + IR + FT+  V++ 
Sbjct: 206 IEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFD---VAPIR-DVFTWTAVVSG 261

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
            A +   E  K+V   M     +  + + +A++  Y +   +E +K++F+ MP  ++ SW
Sbjct: 262 YAQNGMLEEAKRVFDAMP----EKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW 317

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            +++ GYAQ GM D+A   F+++     Q D + +  +L A +  G  ++ LQ F  +  
Sbjct: 318 NTMLTGYAQAGMLDEARAIFDMM----PQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGR 373

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                  A ++ C        G   EA     +M  + D   W +++ G   HG
Sbjct: 374 ------CAMYFKC--------GNMEEAHSAFEEMEER-DIVSWNTMIAGYARHG 412


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 257/454 (56%), Gaps = 34/454 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PSP   +SLIQ C     L+ GK +H ++   G    + +    +DMY+K G+I      
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDI------ 282

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                    E AR +F +MP R+  SW AMISG VR     E+ 
Sbjct: 283 -------------------------ESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESF 317

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL+  +        +  T+ S+L   S    L  GK +HG  +R+ F+S+ ++ +A+ D+
Sbjct: 318 DLFHRLVRSSGGF-DLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDL 375

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+ +A  +F++M DR+V++WTAM+    Q G  E+   LF+++ + GI  N+ TF
Sbjct: 376 YSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTF 435

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-GMP 322
             ++++CA   + + G+ +HG++ R+G+       +ALV MY+KCG +  ++++F+ G  
Sbjct: 436 VSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSI 495

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D+V W S+I GY  +G   +A+  +  +++ G +P+   F+ +L+AC+H+ LV++G+ 
Sbjct: 496 SKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGIS 555

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            F+S++  H +     HYAC+VDLL+R+GRF EA+ +I KMP +P   +  +LL GCR H
Sbjct: 556 LFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTH 615

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            N++L  + ++ L  ++  NP  Y+ ++NIYA A
Sbjct: 616 KNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEA 649



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 220/456 (48%), Gaps = 46/456 (10%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           + + L++     R+LE  + V        F+P   + N +L  Y + G   +   LF  M
Sbjct: 66  VATKLVKAYSDLRSLEAARYVFDQF----FQPKGLLCNAMLCGYLQSGRYRETLELFGLM 121

Query: 88  QERDV------CSY---------------------------------NTMISGFTKGGSL 108
           + R++      C++                                 ++MIS   K G +
Sbjct: 122 RSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKI 181

Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
            +A+ +FD MP +D   W ++I GYV+      A  L+  M        +  T++S++ A
Sbjct: 182 GEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHG-SGIKPSPITMTSLIQA 240

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
              I  L+LGK +HGY++  G  +D +V ++  DMY K G I  AR +F KM  R++VSW
Sbjct: 241 CGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSW 300

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
            AMI    + G   E F LF  L++S    +  T   +L  C+  A+   GK +HG   R
Sbjct: 301 NAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR 360

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
             ++     ++A+V +YSKCG+++ +  VFN M   ++++WT+++ G AQNG  + AL  
Sbjct: 361 -SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRL 419

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  + + G   + + FV ++ +C H G + +G +  H    + G  +   +   +VD+ A
Sbjct: 420 FAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG-RSIHGHLFRLGFAFDIVNMTALVDMYA 478

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           + G+ + AE + S   +  D  LW S++ G  +HG+
Sbjct: 479 KCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGH 514



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 199/381 (52%), Gaps = 17/381 (4%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ--NFE-N 154
           ++  ++   SLE AR +FD+  Q       AM+ GY++  +  E L+L+ +M+  N E +
Sbjct: 70  LVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVD 129

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           S S  F L +  S++       +G EI    +  G + +  V S++     K G I EA+
Sbjct: 130 SCSCTFALKACASSLD----YEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQ 185

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++FD M ++DVV W ++IG Y Q G  +  F LF E+  SGI+P+  T   ++ AC    
Sbjct: 186 RVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIG 245

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             +LGK +HGY+  +G        ++ V MYSK G++E+++ VF  MP  +LVSW ++I+
Sbjct: 246 NLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMIS 305

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVDKGLQYFHSIK--EKH 391
           G  +NG+  ++ + F  L++S    D    V +L  C+  A L    + +  +I+  E +
Sbjct: 306 GCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESN 365

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            +  TA     IVDL ++ G   +A  V ++M  + +   W ++L G   +G+ + A R 
Sbjct: 366 LILSTA-----IVDLYSKCGSLKQATFVFNRMKDR-NVITWTAMLVGLAQNGHAEDALRL 419

Query: 452 -AEALFEIEPENPATYVTMAN 471
            A+   E    N  T+V++ +
Sbjct: 420 FAQMQEEGIAANSVTFVSLVH 440



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 2/265 (0%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K  H  I+     +D+ V + L   Y    S+  AR +FD+      +   AM+  Y Q 
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           GR  E   LF  +    +  ++ +    L ACA     E+G ++       G +   F  
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           S+++    K G +  +++VF+GMP  D+V W S+I GY Q G  D A + F  +  SG +
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P  I    ++ AC   G +  G +  H      GL          VD+ ++ G    A  
Sbjct: 229 PSPITMTSLIQACGGIGNLKLG-KCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARW 287

Query: 419 VISKMPMKPDKFLWASLLGGCRIHG 443
           V  KMP + +   W +++ GC  +G
Sbjct: 288 VFYKMPTR-NLVSWNAMISGCVRNG 311


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 269/479 (56%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+     R+  A  I  ++       +++LI  C  N       ++   +KSSG  P V
Sbjct: 151 VDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNV 210

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDE 117
           F+ + +L   A  G     + +   M + +  S +     ++  + K   L+ A  +FD 
Sbjct: 211 FMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDW 270

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  RD   W A+ISG     +  EA  ++  ++  E    N+ TL++VL + ++++    
Sbjct: 271 MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK-EGLGVNRTTLAAVLKSTASLEAASA 329

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            +++H    + GF  D  V + L D Y KC  +++A ++F++    D+++ T+MI    Q
Sbjct: 330 TRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQ 389

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               E    LF E+++ G+ P+ F  + +LNACA  +A E GKQVH ++ +  +   +FA
Sbjct: 390 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 449

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV+ Y+KCG++E+++  F+ +P   +VSW+++I G AQ+G   +ALE F  ++  G 
Sbjct: 450 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 509

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI    VL AC HAGLVD+  +YF+S+KE  G+  T +HY+C++DLL R+G+  +A 
Sbjct: 510 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 569

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++++ MP + +  +W +LLG  R+H + +L K AAE LF +EPE   T+V +AN YAS+
Sbjct: 570 ELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASS 628



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 230/469 (49%), Gaps = 50/469 (10%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +A+Q+  ++      P+   +S ++  C  +R ++ G++VH+ +   G++  VF +N L+
Sbjct: 92  DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALV 151

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY K G +  A  +F++M + DV S+N +ISG    G   +A  L  +M          
Sbjct: 152 DMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS-------- 203

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
             SG                       V N F LSS+L A +      LG++IHG++++ 
Sbjct: 204 --SGL----------------------VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA 239

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
             DSD+ +   L DMY K   +++A ++FD M  RD++ W A+I      GR +E F++F
Sbjct: 240 NADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIF 299

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             L K G+  N  T A VL + A   A    +QVH    +IG+   +   + L+  Y KC
Sbjct: 300 YGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKC 359

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
             + ++ +VF      D+++ TS+I   +Q    + A++ F  +L+ G +PD  V   +L
Sbjct: 360 SCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLL 419

Query: 369 TACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPM 425
            AC      ++G Q + H IK +    + +D +A   +V   A+ G   +AE   S +P 
Sbjct: 420 NACASLSAYEQGKQVHAHLIKRQ----FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 475

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE--NPATYVTMANI 472
           +     W++++GG   HG+    KRA E    +  E  NP  ++TM ++
Sbjct: 476 R-GVVSWSAMIGGLAQHGH---GKRALELFGRMVDEGINP-NHITMTSV 519



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 197/432 (45%), Gaps = 72/432 (16%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFT 103
           G +VH+   ++GF   VF++N L+ MY   G + DA+ +FDE   ER+  S+N ++S + 
Sbjct: 26  GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 85

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           K      A  +F EM       W+ +        QP E                  F  S
Sbjct: 86  KNDQCGDAIQVFGEMV------WSGI--------QPTE------------------FGFS 113

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            V++A +  + +  G+++H  ++R G++ D    +AL DMY K G ++ A  IF+KM D 
Sbjct: 114 CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS 173

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVVSW A+I      G       L  ++  SG+ PN F  + +L ACA   A +LG+Q+H
Sbjct: 174 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 233

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G+M +   D   +    LV MY+K   ++++ KVF+ M   DL+ W +LI+G +  G  D
Sbjct: 234 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 293

Query: 344 KALEYFELLLKSGTQPDHIVFVGVL--TACTHAGLVDKGLQYFHSIKEKHGLTYTA---- 397
           +A   F  L K G   +      VL  TA   A       +  H++ EK G  + A    
Sbjct: 294 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAA---SATRQVHALAEKIGFIFDAHVVN 350

Query: 398 ---DHY---ACIVDLL-----ARSGRFHEAEDVISKMP-------------------MKP 427
              D Y   +C+ D +       SG       +I+ +                    ++P
Sbjct: 351 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP 410

Query: 428 DKFLWASLLGGC 439
           D F+ +SLL  C
Sbjct: 411 DPFVLSSLLNAC 422



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 156/303 (51%), Gaps = 18/303 (5%)

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           E    N+F L  VL  V   Q   LG ++H   M TGF SD  V +AL  MYG  G +++
Sbjct: 4   EGVCCNEFALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 60

Query: 213 ARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           AR++FD+   +R+ VSW  ++  Y +  +  +   +F E++ SGI+P  F F+ V+NAC 
Sbjct: 61  ARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 120

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                + G+QVH  + R+GY+   F A+ALV MY K G V+ +  +F  MP  D+VSW +
Sbjct: 121 GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNA 180

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           LI+G   NG   +A+E    +  SG  P+  +   +L AC  AG  D G Q        H
Sbjct: 181 LISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI-------H 233

Query: 392 GLTYTA----DHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           G    A    D Y    +VD+ A++    +A  V   M  + D  LW +L+ GC   G  
Sbjct: 234 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRH 292

Query: 446 DLA 448
           D A
Sbjct: 293 DEA 295


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 248/444 (55%), Gaps = 32/444 (7%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L+Q   +NRA  EG   H+ +   G +     SN L++MY+KC                 
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKC----------------- 95

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                         G +E AR LFDEMP R   SW  M+  + +     +AL L+  MQ 
Sbjct: 96  --------------GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQK 141

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            E +  ++FT+SSV+ A +A  C+   K++HG+ ++T  DS+  V +AL D+Y KCG + 
Sbjct: 142 -EGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 200

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A  +F+ M +R  V+W++M+  Y Q    EE   LF      G+  N FT +  L+ACA
Sbjct: 201 DANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACA 260

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
             AA   GKQV     + G     F  S+L+ MY+KCG +E +  VF+ +   ++V W +
Sbjct: 261 ARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNA 320

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +++G++++    +A+ YFE + + G  P+ I ++ VL+AC+H GLV+KG +YF  +   H
Sbjct: 321 ILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH 380

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            ++    HY+C+VD+L R+G  HEA+D I +MP      +W SLL  CRI+ NL+LA+ A
Sbjct: 381 NVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVA 440

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           A+ LFEIEP N   +V ++NIYA+
Sbjct: 441 AKHLFEIEPHNAGNHVLLSNIYAA 464



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 145/307 (47%), Gaps = 34/307 (11%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           SS++  C     + E K++H     +     VF+   LLD+YAKCG + DA  +F+ M E
Sbjct: 152 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 211

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R   ++++M++G+ +    E+A  LF                         +A+ L    
Sbjct: 212 RSDVTWSSMVAGYVQNELYEEALVLF----------------------HRAQAMGLEH-- 247

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   N+FT+SS LSA +A   L  GK++     +TG  S+  V S+L DMY KCG 
Sbjct: 248 --------NQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGI 299

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I EA  +F  + +++VV W A++  + +  R  E    F ++ + GI PN  T+  VL+A
Sbjct: 300 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 359

Query: 270 CADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           C+     E G++    M R+    P     S +V +  + G +  +K   + MP     S
Sbjct: 360 CSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 419

Query: 329 -WTSLIA 334
            W SL+A
Sbjct: 420 MWGSLLA 426



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 3/190 (1%)

Query: 250 ELIKSGIRPNAFT-FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           EL+  GIR    +    +L + A + A   G   H  + R+G    +  ++ L++MYSKC
Sbjct: 36  ELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKC 95

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G VE+++K+F+ MP   LVSW +++  + QNG  +KAL  F  + K GT         V+
Sbjct: 96  GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVV 155

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC     V +  Q  H    K  L         ++D+ A+ G   +A  V   MP + D
Sbjct: 156 CACAAKCCVFECKQ-LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD 214

Query: 429 KFLWASLLGG 438
              W+S++ G
Sbjct: 215 -VTWSSMVAG 223


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 269/479 (56%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+     R+  A  I  ++       +++LI  C  N       ++   +KSSG  P V
Sbjct: 244 VDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNV 303

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDE 117
           F+ + +L   A  G     + +   M + +  S +     ++  + K   L+ A  +FD 
Sbjct: 304 FMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDW 363

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  RD   W A+ISG     +  EA  ++  ++  E    N+ TL++VL + ++++    
Sbjct: 364 MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK-EGLGVNRTTLAAVLKSTASLEAASA 422

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            +++H    + GF  D  V + L D Y KC  +++A ++F++    D+++ T+MI    Q
Sbjct: 423 TRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQ 482

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               E    LF E+++ G+ P+ F  + +LNACA  +A E GKQVH ++ +  +   +FA
Sbjct: 483 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV+ Y+KCG++E+++  F+ +P   +VSW+++I G AQ+G   +ALE F  ++  G 
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI    VL AC HAGLVD+  +YF+S+KE  G+  T +HY+C++DLL R+G+  +A 
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++++ MP + +  +W +LLG  R+H + +L K AAE LF +EPE   T+V +AN YAS+
Sbjct: 663 ELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASS 721



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 230/469 (49%), Gaps = 50/469 (10%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +A+Q+  ++      P+   +S ++  C  +R ++ G++VH+ +   G++  VF +N L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALV 244

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY K G +  A  +F++M + DV S+N +ISG    G   +A  L  +M          
Sbjct: 245 DMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS-------- 296

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
             SG                       V N F LSS+L A +      LG++IHG++++ 
Sbjct: 297 --SGL----------------------VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA 332

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
             DSD+ +   L DMY K   +++A ++FD M  RD++ W A+I      GR +E F++F
Sbjct: 333 NADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIF 392

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             L K G+  N  T A VL + A   A    +QVH    +IG+   +   + L+  Y KC
Sbjct: 393 YGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKC 452

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
             + ++ +VF      D+++ TS+I   +Q    + A++ F  +L+ G +PD  V   +L
Sbjct: 453 SCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLL 512

Query: 369 TACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPM 425
            AC      ++G Q + H IK +    + +D +A   +V   A+ G   +AE   S +P 
Sbjct: 513 NACASLSAYEQGKQVHAHLIKRQ----FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE--NPATYVTMANI 472
           +     W++++GG   HG+    KRA E    +  E  NP  ++TM ++
Sbjct: 569 R-GVVSWSAMIGGLAQHGH---GKRALELFGRMVDEGINP-NHITMTSV 612



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/416 (32%), Positives = 201/416 (48%), Gaps = 52/416 (12%)

Query: 40  RALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           +AL  G  +H++L  SGF     + N L+  Y+KC               R  C      
Sbjct: 18  QALLPGAHLHANLLKSGFLAS--LRNHLISFYSKC--------------RRPCC------ 55

Query: 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159
                      AR +FDE+P   + SW+++++ Y     P  A+  +  M+  E    N+
Sbjct: 56  -----------ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGVCCNE 103

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
           F L  VL  V   Q   LG ++H   M TGF SD  V +AL  MYG  G +++AR++FD+
Sbjct: 104 FALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDE 160

Query: 220 M-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
              +R+ VSW  ++  Y +  +  +   +F E++ SGI+P  F F+ V+NAC      + 
Sbjct: 161 AGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDA 220

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G+QVH  + R+GY+   F A+ALV MY K G V+ +  +F  MP  D+VSW +LI+G   
Sbjct: 221 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA- 397
           NG   +A+E    +  SG  P+  +   +L AC  AG  D G Q        HG    A 
Sbjct: 281 NGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI-------HGFMIKAN 333

Query: 398 ---DHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
              D Y    +VD+ A++    +A  V   M  + D  LW +L+ GC   G  D A
Sbjct: 334 ADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHDEA 388



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 197/432 (45%), Gaps = 72/432 (16%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFT 103
           G +VH+   ++GF   VF++N L+ MY   G + DA+ +FDE   ER+  S+N ++S + 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 178

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           K      A  +F EM       W+ +        QP E                  F  S
Sbjct: 179 KNDQCGDAIQVFGEM------VWSGI--------QPTE------------------FGFS 206

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            V++A +  + +  G+++H  ++R G++ D    +AL DMY K G ++ A  IF+KM D 
Sbjct: 207 CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS 266

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVVSW A+I      G       L  ++  SG+ PN F  + +L ACA   A +LG+Q+H
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 326

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G+M +   D   +    LV MY+K   ++++ KVF+ M   DL+ W +LI+G +  G  D
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 386

Query: 344 KALEYFELLLKSGTQPDHIVFVGVL--TACTHAGLVDKGLQYFHSIKEKHGLTYTA---- 397
           +A   F  L K G   +      VL  TA   A       +  H++ EK G  + A    
Sbjct: 387 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAA---SATRQVHALAEKIGFIFDAHVVN 443

Query: 398 ---DHY---ACIVDLL-----ARSGRFHEAEDVISKMP-------------------MKP 427
              D Y   +C+ D +       SG       +I+ +                    ++P
Sbjct: 444 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 428 DKFLWASLLGGC 439
           D F+ +SLL  C
Sbjct: 504 DPFVLSSLLNAC 515



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 13/311 (4%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T+S  L+  +A Q L  G  +H  ++++GF +   + + L   Y KC     AR++FD++
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEI 63

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            D   VSW++++  Y   G        F  +   G+  N F    VL    D    +LG 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---AQLGA 120

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN--GMPRPDLVSWTSLIAGYAQ 338
           QVH      G+    F A+ALV MY   G ++++++VF+  G  R + VSW  L++ Y +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSER-NAVSWNGLMSAYVK 179

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           N     A++ F  ++ SG QP    F  V+ ACT +  +D G Q  H++  + G      
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDVF 238

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
               +VD+  + GR   A  +  KMP   D   W +L+ GC ++G+     RA E L ++
Sbjct: 239 TANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGH---DHRAIELLLQM 294

Query: 459 EPENPATYVTM 469
           +       V M
Sbjct: 295 KSSGLVPNVFM 305


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 231/419 (55%), Gaps = 32/419 (7%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + D+  +N +I      G L  AR LFDE   RD  SW ++I+GYVR     EA DLY  
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M    N + ++ T+  V+SA + ++ L LG+++H  I   G +    + +AL DMY KC 
Sbjct: 247 MGEL-NVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCK 305

Query: 209 SINEARQIFDKMVDRDVVSWT-------------------------------AMIGRYFQ 237
           +I  A+ +F+ M  + VVSWT                               A+IG + Q
Sbjct: 306 NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQ 365

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             R +E  ALF E+  S + P+  T    L+AC+   A ++G  +H Y+ +         
Sbjct: 366 AKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVAL 425

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV MY+KCGN++ + +VF  MP  + ++WT++I G A +G P  A+ YF  ++  G 
Sbjct: 426 GTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGL 485

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD I F+GVL+AC H GLVD+G  YF+ +  K+G++    HY+C+VDLL R+G   EAE
Sbjct: 486 VPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAE 545

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++I  MP +PD  +W +L  G RIHGN+ + +RAA  L E++P +   YV +AN+Y  A
Sbjct: 546 ELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDA 604



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 199/417 (47%), Gaps = 39/417 (9%)

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL------FDE 117
           SN LL +   C +++  + +  +M    + S    +S      ++ + RNL       + 
Sbjct: 54  SNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNN 113

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
               + FSW   I GYV    PI A+ LYR M    +++ + +T   +    +       
Sbjct: 114 AANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWT 173

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
             EI G++++ GFDSD  V +A+  +   CG +  AR++FD+   RD+VSW ++I  Y +
Sbjct: 174 ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVR 233

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  +E F L+ ++ +  + P+  T  GV++A A      LG+++H  +  +G +     
Sbjct: 234 CGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPL 293

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ-----------NGMPDK-- 344
           A+AL+ MY KC N+E +K +F  M +  +VSWT+++ GYA+           N MP+K  
Sbjct: 294 ANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353

Query: 345 ------------------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
                             AL  F  +  S   PD I  V  L+AC+  G +D G+ + H 
Sbjct: 354 VLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI-WMHH 412

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +KH LT        +VD+ A+ G   +A  V  +MP + +   W +++ G  +HG
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHG 468


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 181/516 (35%), Positives = 260/516 (50%), Gaps = 75/516 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P P +Y  LI+      A + G   H+++   G     FI N +LDMYAK G +  A+ L
Sbjct: 98  PQPFVYIYLIKL-----AGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNL 152

Query: 84  FDEMQERDVCSYNTMISG-------------------------------FTKGGSLEQAR 112
           F++M ER +  +N+MISG                               + K G LE AR
Sbjct: 153 FEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESAR 212

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172
             FDEMP+R   SW AM S Y +   P EAL+L+  M   E    +  T    +S+ S+I
Sbjct: 213 RYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGITPDDTTWVVTISSCSSI 271

Query: 173 -------QCLRLGKEIHGY--------------------IMRTGFDS-----DEVVWSAL 200
                    LR+  + H                      I R  FD      + V W+ +
Sbjct: 272 GDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIM 331

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPN 259
              Y + G ++ AR++FD M  RDVVSW +MI  Y Q G       LF E+I    I+P+
Sbjct: 332 ISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPD 391

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T A VL+AC    A +L   V   +            ++L+ MYSKCG+V ++ ++F 
Sbjct: 392 EVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQ 451

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D+VS+ +LI+G+A NG   +A++    + + G +PDH+ ++GVLTAC+HAGL+++
Sbjct: 452 TMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNE 511

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G   F SI+       T DHYAC+VDLL R+G   EA+ +I  MPMKP   ++ SLL   
Sbjct: 512 GKNVFKSIQAP-----TVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNAS 566

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           RIH  + L + AA  LFE+EP+N   YV ++NIYAS
Sbjct: 567 RIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYAS 602



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/368 (19%), Positives = 143/368 (38%), Gaps = 82/368 (22%)

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE----ARQ 215
           + L ++ S +S I+ LR   + HG+++     S    W +L  +   C  ++        
Sbjct: 2   YELVALASKISNIRQLR---QFHGHLVHNSLHSHNY-WVSL--LLINCTRLHAHPAYVDS 55

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           IF      D   ++ M+  Y + G   +  +LF       +RP  F +  ++       A
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LA 110

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK------------------- 316
            + G   H Y+ ++G+    F  +A++ MY+K G V+ ++                    
Sbjct: 111 GKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 317 ------------VFNGMPRPDLVSWTSLIAGYAQNG-----------MPDK--------- 344
                       +FN MP  ++++WTS++ GYA+ G           MP++         
Sbjct: 171 CWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230

Query: 345 -----------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
                      AL  F  +L+ G  PD   +V  +++C+  G           I +KH +
Sbjct: 231 SAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKH-I 289

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
              +     ++D+ A+ G    A ++  ++  + +   W  ++      G L LA+    
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARE--- 346

Query: 454 ALFEIEPE 461
            LF+  P+
Sbjct: 347 -LFDNMPK 353


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/507 (31%), Positives = 270/507 (53%), Gaps = 74/507 (14%)

Query: 42   LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
            LE GK++H  +  SG    V + NCL++MY K G++S A+++F +M E D+ S+NTMISG
Sbjct: 951  LELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG 1010

Query: 102  FTKGGSLEQARNLF------DEMPQR---------------------------------- 121
             T  G  E +  +F        +P +                                  
Sbjct: 1011 CTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVL 1070

Query: 122  DNFSWTAMISGYVRYNQPIEALDLYRMMQNFE----NSV--------------------- 156
            D+F  TA+I  Y +  +  EA  L+     F+    N++                     
Sbjct: 1071 DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQ 1130

Query: 157  -----SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                 S++ TL +   A   +  L+ GK+IH  +++ GF+ D  V S + DMY KCG + 
Sbjct: 1131 ESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEME 1190

Query: 212  EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
             AR++F ++   D V+WT MI    + G+ E     + ++  S ++P+ +TFA ++ AC+
Sbjct: 1191 SARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250

Query: 272  DHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
               A E G+Q+H  + ++   +DP  F  ++LV MY+KCGN+E+++ +F       + SW
Sbjct: 1251 LLTALEQGRQIHANIVKLNCAFDP--FVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASW 1308

Query: 330  TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
             ++I G AQ+G   +AL++F+ +   G  PD + F+GVL+AC+H+GLV +  + F+S+++
Sbjct: 1309 NAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQK 1368

Query: 390  KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
             +G+    +HY+C+VD L+R+GR  EAE VIS MP +    ++ +LL  CR+  + +  K
Sbjct: 1369 NYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGK 1428

Query: 450  RAAEALFEIEPENPATYVTMANIYASA 476
            R AE L  +EP + A YV ++N+YA+A
Sbjct: 1429 RVAEKLLALEPSDSAAYVLLSNVYAAA 1455



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 178/426 (41%), Gaps = 69/426 (16%)

Query: 23   HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            H  P  +S L Q    +  L  GK+ H+ + +SG  P  F++N L+ MYAKCG       
Sbjct: 654  HSLPQCFSILRQAIAASD-LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCG------- 705

Query: 83   LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRY-NQP 139
                                    SL  AR LFD  P   RD  +W A++S    + ++ 
Sbjct: 706  ------------------------SLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKS 741

Query: 140  IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             +   L+R+++    S + + TL+ V             + +HGY ++ G   D  V  A
Sbjct: 742  HDGFHLFRLLRRSVVSTT-RHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGA 800

Query: 200  LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
            L ++Y K G I EAR +FD M  RDVV W  M+  Y       E   LFSE  ++G RP+
Sbjct: 801  LVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPD 860

Query: 260  AFTFAGV--LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
              T   +  +  C  +  E   KQ   Y T++              MY   G+       
Sbjct: 861  DVTLRTLSRVVKCKKNILEL--KQFKAYATKL-------------FMYDDDGS------- 898

Query: 318  FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
                   D++ W   ++ + Q G   +A++ F  ++ S    D + FV +LT       +
Sbjct: 899  -------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCL 951

Query: 378  DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            + G Q  H I  + GL        C++++  ++G    A  V  +M  + D   W +++ 
Sbjct: 952  ELGKQ-IHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMIS 1009

Query: 438  GCRIHG 443
            GC + G
Sbjct: 1010 GCTLSG 1015



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 159/377 (42%), Gaps = 63/377 (16%)

Query: 91   DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
            DV     +++ + K G + +AR LFD M  RD   W  M+  YV      EA+ L+    
Sbjct: 794  DVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLF---- 849

Query: 151  NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                                         E H    RTGF  D+V    LS +     +I
Sbjct: 850  ----------------------------SEFH----RTGFRPDDVTLRTLSRVVKCKKNI 877

Query: 211  NEARQ-------IFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             E +Q       +F  M D    DV+ W   + R+ Q G   E    F ++I S +  + 
Sbjct: 878  LELKQFKAYATKLF--MYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDG 935

Query: 261  FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
             TF  +L   A     ELGKQ+HG + R G D      + L++MY K G+V  ++ VF  
Sbjct: 936  LTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQ 995

Query: 321  MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
            M   DL+SW ++I+G   +G+ + ++  F  LL+    PD      VL AC+      +G
Sbjct: 996  MNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSL----EG 1051

Query: 381  LQYF----HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF---LWA 433
              Y     H+   K G+   +     ++D+ ++ G+  EAE +     +  D F    W 
Sbjct: 1052 GYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF----VNQDGFDLASWN 1107

Query: 434  SLLGGCRIHGNLDLAKR 450
            +++ G  + G+   A R
Sbjct: 1108 AIMHGYIVSGDFPKALR 1124



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 13/152 (8%)

Query: 12   KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLK--SSGFKPGVFISN 65
            + AL   HQ+      P    +++L++ C    ALE+G+++H+++   +  F P  F+  
Sbjct: 1221 EHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP--FVMT 1278

Query: 66   CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---- 121
             L+DMYAKCGNI DA+ LF     R + S+N MI G  + G+ ++A   F  M  R    
Sbjct: 1279 SLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMP 1338

Query: 122  DNFSWTAMISGYVRYNQPIEALD-LYRMMQNF 152
            D  ++  ++S         EA +  Y M +N+
Sbjct: 1339 DRVTFIGVLSACSHSGLVSEAYENFYSMQKNY 1370


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 252/453 (55%), Gaps = 10/453 (2%)

Query: 29  YSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA----QTL 83
           +SS+I  + R  R  E    ++  + + G +P V    C L   A    ++D     Q +
Sbjct: 99  WSSIIAAYARAGRG-EMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRI 157

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                 +D    +++++ + K   + +AR +F+ M  R+  S+TAMIS YV+  +  EAL
Sbjct: 158 LASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEAL 217

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M   E    N +T +++L AV  +  L  G+++H ++   GFD++ VV +AL  M
Sbjct: 218 ELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTM 277

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCGS  EAR++FD M  R+V+SWT+MI  Y Q G  +E   LF  +    + P+  +F
Sbjct: 278 YGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSF 334

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +  LNACA   A + G+++H  +            S L+ MY++CG+++++++VFN M  
Sbjct: 335 SSALNACALLGALDEGREIHHRVVEANLASPQMETS-LLSMYARCGSLDDARRVFNRMKT 393

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D  S  ++IA + Q+G   +AL  +  + + G   D I FV VL AC+H  LV     +
Sbjct: 394 RDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDF 453

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             S+   HG+    +HY C+VD+L RSGR  +AE+++  MP + D   W +LL GC+ HG
Sbjct: 454 LQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHG 513

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LD  +RAA  +FE+ P     YV ++N+YA+A
Sbjct: 514 DLDRGERAARKVFELAPAETLPYVFLSNMYAAA 546



 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 142/450 (31%), Positives = 228/450 (50%), Gaps = 43/450 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           I +SL+  C + +ALEEG+++H HL  +GF+  + +   LL MYAKCG            
Sbjct: 32  IVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCG------------ 79

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                              SL+ A+ +F+ M  +D F+W+++I+ Y R  +   A+ LYR
Sbjct: 80  -------------------SLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M   E    N  T +  L   +++  L  G+ IH  I+ +    D+V+  +L +MY KC
Sbjct: 121 RMIA-EGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKC 179

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGV 266
             + EAR++F+ M  R+V S+TAMI  Y Q G   E   LFS + K   I PNA+TFA +
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L A       E G++VH ++   G+D      +ALV MY KCG+   ++KVF+ M   ++
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 299

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SWTS+IA YAQ+G P +AL  F+   +   +P  + F   L AC   G +D+G +  H 
Sbjct: 300 ISWTSMIAAYAQHGNPQEALNLFK---RMDVEPSGVSFSSALNACALLGALDEGREIHHR 356

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + E +    +      ++ + AR G   +A  V ++M  + D F   +++     HG   
Sbjct: 357 VVEAN--LASPQMETSLLSMYARCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQHGR-- 411

Query: 447 LAKRAAEALFEIEPEN-PATYVTMANIYAS 475
             K+A     ++E E  PA  +T  ++  +
Sbjct: 412 -KKQALRIYRKMEQEGIPADGITFVSVLVA 440



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 176/337 (52%), Gaps = 13/337 (3%)

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI+  VR  +P++AL+L+  M+     V++KF ++S+++A + +Q L  G+ +H +++ T
Sbjct: 1   MIAACVREGRPLQALELWGEMEE-RGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIIT 59

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF +D  + +AL  MY KCGS+++A+++F+ M  +D+ +W+++I  Y + GR E    L+
Sbjct: 60  GFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLY 119

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             +I  G+ PN  TFA  L  CA  A    G+ +H  +             +L++MY KC
Sbjct: 120 RRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKC 179

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGV 367
             +  ++KVF GM   ++ S+T++I+ Y Q G   +ALE F  + K    +P+   F  +
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L A    G ++KG +    +  + G          +V +  + G   EA  V   M  + 
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASR-GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTAR- 297

Query: 428 DKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEP 460
           +   W S++     HGN    L+L KR      ++EP
Sbjct: 298 NVISWTSMIAAYAQHGNPQEALNLFKR-----MDVEP 329



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 16/121 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI-YSSLIQFCRQNRALEEGKKVHS---HLKSSGF 57
           +D+L    RL +A +++  + + + ++ + +L+  C+++  L+ G++       L  +  
Sbjct: 474 VDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAET 533

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV-----CSY---NTMISGFTKGGSLE 109
            P VF+SN    MYA      DA+ +  EM+ER V      SY   +  +  FT GG  E
Sbjct: 534 LPYVFLSN----MYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDE 589

Query: 110 Q 110
           Q
Sbjct: 590 Q 590


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 252/450 (56%), Gaps = 31/450 (6%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+   +S+++  C    A   G+++HS +   GF   VF+ + L+DMYAKC ++  A+ 
Sbjct: 127 YPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEK 186

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F+EM  R++ S+NTMI GF +    +QA   F  +                        
Sbjct: 187 VFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTL------------------------ 222

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                +++N   +  ++ + SSV SA +    L  GK++HG  ++ G  +   + ++LSD
Sbjct: 223 -----LLENL--TALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSD 275

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MYGKCG  N+  ++F     RDVV+W  MI  Y      E+    F  + + G  P+  +
Sbjct: 276 MYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEAS 335

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           ++ VL++CA+ AA   G  +H  + R G+      AS+L+ MY+KCG++ ++ ++F    
Sbjct: 336 YSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETE 395

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             ++V WT++IA   Q+G  +  +E FE +L+ G +PD+I FV VL+AC+H G V++G  
Sbjct: 396 DRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFF 455

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+ + HG+    +HYACIVDLL+R+G    A+  I  MP+KPD  +W +LL  CR H
Sbjct: 456 YFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNH 515

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANI 472
            NL + K  A  LF++EP+NP  YV + NI
Sbjct: 516 SNLIMGKEVALKLFDLEPDNPGNYVLLCNI 545



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 213/460 (46%), Gaps = 45/460 (9%)

Query: 23  HPSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           H +P ++  +SL      +R  +   ++HS L ++      F+ N LL++YAKCG++   
Sbjct: 22  HQTPFLHPLTSLNSLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVD-- 79

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQ 138
           QTL                              LF   P   ++  SWT++I+   R+ +
Sbjct: 80  QTLL-----------------------------LFSSAPDDSKNVVSWTSLITQLTRFKR 110

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           P +AL  +  M+       N +T S+VLSA +       G+++H  + + GF ++  V S
Sbjct: 111 PFKALTFFNHMRR-SGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVS 169

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL DMY KC  +  A ++F++M  R++VSW  MI  + Q    ++    F  L+   +  
Sbjct: 170 ALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTA 229

Query: 259 -NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
            +  +F+ V +ACA+    E GKQVHG   ++G     +  ++L  MY KCG   +  K+
Sbjct: 230 LDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKL 289

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+     D+V+W  +I  Y  N   + A   F ++ + G+ PD   +  VL +C +   +
Sbjct: 290 FSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAAL 349

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +G    H+   + G        + ++ + A+ G   +A  +  +   + +   W +++ 
Sbjct: 350 YQG-TLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDR-NVVCWTAIIA 407

Query: 438 GCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
            C+ HG+ +      E +    I+P+    Y+T  ++ ++
Sbjct: 408 ACQQHGHANWVVELFEQMLREGIKPD----YITFVSVLSA 443



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           S P  + YSS++  C    AL +G  +H+ +  SGF   + +++ L+ MYAKCG++ DA 
Sbjct: 329 SIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAF 388

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
            +F+E ++R+V  +  +I+   + G       LF++M
Sbjct: 389 QIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQM 425


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/486 (32%), Positives = 250/486 (51%), Gaps = 62/486 (12%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P    +  L++ C + +    G  V  ++ S GF   VF+ N  +   A C       
Sbjct: 116 ARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCS------ 169

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                    S+ +AR LFD    RD  SW  +I GYVR   P E
Sbjct: 170 -------------------------SMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPRE 204

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           AL+++  M        ++ T+  V+S  + ++ L LG+ +HGY+   G      + + + 
Sbjct: 205 ALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVM 264

Query: 202 DMYGKCGSI-------------------------------NEARQIFDKMVDRDVVSWTA 230
           DMY KCG +                               ++AR++FD+M +RDV  W A
Sbjct: 265 DMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNA 324

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           ++  Y Q  R +E   LF ++ ++ + P+  T   +L+AC+   A E+G  VH Y+ R  
Sbjct: 325 LMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRR 384

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                   + LV MYSKCGN+E + +VF  +P  + ++WT++I+G A +G  D A++YF+
Sbjct: 385 VSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQ 444

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +++ G QPD I F+GVL+AC HAGLV +G ++F  +  K+ L     HY+C+VDLL R+
Sbjct: 445 RMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRA 504

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   EAE +++ MPM+PD  +W +L   CR+HGN+ L ++AA  L E++P +   YV +A
Sbjct: 505 GYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLA 564

Query: 471 NIYASA 476
           N+YA A
Sbjct: 565 NMYAEA 570


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 253/453 (55%), Gaps = 10/453 (2%)

Query: 29  YSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA----QTL 83
           +SS+I  + R  R  E    ++  + + G +P V    C L   A    ++D     Q +
Sbjct: 79  WSSIISAYARAGRG-EMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRI 137

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                 +D    +++++ + K   + +AR +F+ M  R+  S+TAMIS YV+  +  EAL
Sbjct: 138 LASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEAL 197

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M   E    N +T +++L AV  +  L  G+++H ++   GFD++ VV +AL  M
Sbjct: 198 ELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTM 257

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCGS  EAR++FD M  R+V+SWT+MI  Y Q G  +E   LF  +    + P+  +F
Sbjct: 258 YGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSF 314

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +  LNACA   A + G+++H  +            S L+ MY++CG+++++++VFN M  
Sbjct: 315 SSALNACALLGALDEGREIHHRVVEAHLASPQMETS-LLSMYARCGSLDDARRVFNRMKT 373

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D  S  ++IA + Q+G   +AL  +  + + G   D I FV VL AC+H  LV     +
Sbjct: 374 RDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDF 433

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+   HG+    +HY C+VD+L RSGR  +AE+++  MP + D   W +LL GC+ HG
Sbjct: 434 FQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHG 493

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +L+  +RAA  +FE+ P     YV ++N+YA+A
Sbjct: 494 DLNRGERAARKVFELAPAETLPYVFLSNMYAAA 526



 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 227/450 (50%), Gaps = 43/450 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           I +SL+  C + +ALEEG+++H HL  +GF+  + +   LL MYAKCG            
Sbjct: 12  IVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCG------------ 59

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                              SL+ A+ +F+ M  +D F+W+++IS Y R  +   A+ LYR
Sbjct: 60  -------------------SLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYR 100

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M   E    N  T +  L   +++  L  G+ IH  I+ +    D+V+  +L +MY KC
Sbjct: 101 RMIA-EGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKC 159

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGV 266
             + EAR++F+ M  R+V S+TAMI  Y Q G   E   LFS + K   I PNA+TFA +
Sbjct: 160 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 219

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L A       E G++VH ++   G+D      +ALV MY KCG+   ++KVF+ M   ++
Sbjct: 220 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 279

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SWTS+IA YAQ+G P +AL  F+   +   +P  + F   L AC   G +D+G +  H 
Sbjct: 280 ISWTSMIAAYAQHGNPQEALNLFK---RMDVEPSGVSFSSALNACALLGALDEGREIHHR 336

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + E H    +      ++ + AR G   +A  V ++M  + D F   +++     HG   
Sbjct: 337 VVEAH--LASPQMETSLLSMYARCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQHGR-- 391

Query: 447 LAKRAAEALFEIEPEN-PATYVTMANIYAS 475
             K+A      +E E  PA  +T  ++  +
Sbjct: 392 -KKQALRIYRRMEQEGIPADGITFVSVLVA 420



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 160/310 (51%), Gaps = 12/310 (3%)

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V++KF ++S+++A + +Q L  G+ +H +++ TGF +D  + +AL  MY KCGS+++A++
Sbjct: 7   VADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKR 66

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+ M  +D+ +W+++I  Y + GR E    L+  +I  G+ PN  TFA  L  CA  A 
Sbjct: 67  VFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAG 126

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              G+ +H  +             +L++MY KC  +  ++KVF GM   ++ S+T++I+ 
Sbjct: 127 LADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISA 186

Query: 336 YAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           Y Q G   +ALE F  + K    +P+   F  +L A    G ++KG +    +  + G  
Sbjct: 187 YVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASR-GFD 245

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN----LDLAKR 450
                   +V +  + G   EA  V   M  + +   W S++     HGN    L+L KR
Sbjct: 246 TNVVVQNALVTMYGKCGSPVEARKVFDSMTAR-NVISWTSMIAAYAQHGNPQEALNLFKR 304

Query: 451 AAEALFEIEP 460
                 ++EP
Sbjct: 305 -----MDVEP 309



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 112/237 (47%), Gaps = 44/237 (18%)

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           + GI  + F    ++ AC    A E G+++H ++   G+       +AL+ MY+KCG+++
Sbjct: 3   ERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLD 62

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
           ++K+VF GM   DL +W+S+I+ YA+ G  + A+  +  ++  G +P+ + F   L  C 
Sbjct: 63  DAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCA 122

Query: 373 H-AGLVD----------------------------------KGLQYFHSIKEKHGLTYTA 397
             AGL D                                  +  + F  +K ++  +YTA
Sbjct: 123 SVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTA 182

Query: 398 DHYACIVDLLARSGRFHEAEDVISKM----PMKPDKFLWASLLGGCRIHGNLDLAKR 450
                ++    ++G   EA ++ S+M     ++P+ + +A++LG     GNL+  ++
Sbjct: 183 -----MISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRK 234


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 231/419 (55%), Gaps = 32/419 (7%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           + D+  +N +I      G L  AR LFDE   RD  SW ++I+GYVR     EA DLY  
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M    N + ++ T+  V+SA + ++ L LG+++H  I   G +    + +AL DMY KC 
Sbjct: 247 MGEL-NVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCK 305

Query: 209 SINEARQIFDKMVDRDVVSWT-------------------------------AMIGRYFQ 237
           +I  A+ +F+ M  + VVSWT                               A+IG + Q
Sbjct: 306 NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQ 365

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             R +E  ALF E+  S + P+  T    L+AC+   A ++G  +H Y+ +         
Sbjct: 366 AKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVAL 425

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV MY+KCGN++ + +VF  MP  + ++WT++I G A +G P  A+ YF  ++  G 
Sbjct: 426 GTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGL 485

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD I F+GVL+AC H GLVD+G  YF+ +  K+G++    HY+C+VDLL R+G   EAE
Sbjct: 486 VPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAE 545

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++I  MP +PD  +W +L  G RIHGN+ + +RAA  L E++P +   YV +AN+Y  A
Sbjct: 546 ELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDA 604



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 199/417 (47%), Gaps = 39/417 (9%)

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL------FDE 117
           SN LL +   C +++  + +  +M    + S    +S      ++ + RNL       + 
Sbjct: 54  SNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNN 113

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
               + FSW   I GYV    PI A+ LYR M    +++ + +T   +    +       
Sbjct: 114 AANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWT 173

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
             EI G++++ GFDSD  V +A+  +   CG +  AR++FD+   RD+VSW ++I  Y +
Sbjct: 174 ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVR 233

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  +E F L+ ++ +  + P+  T  GV++A A      LG+++H  +  +G +     
Sbjct: 234 CGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPL 293

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ-----------NGMPDK-- 344
           A+AL+ MY KC N+E +K +F  M +  +VSWT+++ GYA+           N MP+K  
Sbjct: 294 ANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353

Query: 345 ------------------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
                             AL  F  +  S   PD I  V  L+AC+  G +D G+ + H 
Sbjct: 354 VLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI-WMHH 412

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
             +KH LT        +VD+ A+ G   +A  V  +MP + +   W +++ G  +HG
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHG 468


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 271/477 (56%), Gaps = 5/477 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      ++EALQI       +  +++ ++    Q   L +   +   + ++G +P  
Sbjct: 286 LDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNK 345

Query: 62  FISNCLLDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F   C+L      G I   + +         + D+     +I  ++K G L++A+ + D 
Sbjct: 346 FTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDM 405

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           + ++D  SWT+MI+GYV++    EAL+ ++ MQ       N   L+S +SA + I+ +  
Sbjct: 406 IEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDN-IGLASAISACAGIKAVHQ 464

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G +IH  +  +G+ +D  +W+ L  +Y +CG   EA   F+ +  ++ ++W  +I  + Q
Sbjct: 465 GSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQ 524

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  EE   +F ++ ++G + N FTF   ++A A+ A  + GKQ+H  + + GY   +  
Sbjct: 525 SGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEI 584

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           ++AL+ +Y KCG++E++K  F  M + + VSW ++I   +Q+G   +AL+ F+ + + G 
Sbjct: 585 SNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGL 644

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P  + FVGVLTAC+H GLV++GL YF S+  +HG+    DHYAC+VD+L R+G+   A+
Sbjct: 645 KPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAK 704

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
             + +MP+  D  +W +LL  C++H NL++ + AA+ L E+EP + A+YV ++N YA
Sbjct: 705 RFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYA 761



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 197/415 (47%), Gaps = 34/415 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P + SS++  C +    + G+ +H  +   GF    F+ N L+ +Y +C +   A  +
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F +M   D  ++NT+                               ISG+ +      AL
Sbjct: 201 FCDMLYCDSVTFNTL-------------------------------ISGHAQCGHGDRAL 229

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  MQ       +  T++S+L+A SA+  LR GK++H Y+++ G   D ++  +L D+
Sbjct: 230 GIFDEMQ-LSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDL 288

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G I EA QIFD     +VV W  M+  Y Q     + F +F  ++ +G+RPN FT+
Sbjct: 289 YVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTY 348

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L  C       LG+Q+H    + G+    + +  L+ MYSK G ++ ++++ + +  
Sbjct: 349 PCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEE 408

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+VSWTS+IAGY Q+    +ALE F+ +   G  PD+I     ++AC     V +G Q 
Sbjct: 409 KDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQ- 467

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            H+     G +     +  +V L AR G   EA      +  K +   W  L+ G
Sbjct: 468 IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLISG 521



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 194/374 (51%), Gaps = 15/374 (4%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I  + K G + +AR +F+E+  RDN SW A++SGY +     EA+ LYR M      
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHR-SGV 139

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V   + LSS+LSA +  +  +LG+ IH  + + GF S+  V +AL  +Y +C S   A +
Sbjct: 140 VPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADR 199

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F  M+  D V++  +I  + Q G  +    +F E+  SG+ P++ T A +L AC+    
Sbjct: 200 VFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGD 259

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              GKQ+H Y+ + G         +L+ +Y K G++E + ++F+   R ++V W  ++  
Sbjct: 260 LRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVA 319

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q     K+ + F  +L +G +P+   +  +L  CTH G +  G Q  HS+  K+G  +
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQ-IHSLTIKNG--F 376

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
            +D Y    ++D+ ++ G   +A+ ++  +  K D   W S++ G   H   +  K A E
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK-DVVSWTSMIAGYVQH---EFCKEALE 432

Query: 454 ALFEIE-----PEN 462
              E++     P+N
Sbjct: 433 TFKEMQACGIWPDN 446



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 154/315 (48%), Gaps = 12/315 (3%)

Query: 132 GYVRYNQPIEAL----DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK------EI 181
           G   +N+P+       D  +++  F         L +V  A +   C   G+      EI
Sbjct: 5   GAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEI 64

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H   +  G     ++ + L D+Y K G +  AR++F+++  RD VSW A++  Y Q G  
Sbjct: 65  HAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLG 124

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           EE   L+ E+ +SG+ P  +  + +L+AC      +LG+ +H  + + G+   +F  +AL
Sbjct: 125 EEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNAL 184

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           + +Y +C +   + +VF  M   D V++ +LI+G+AQ G  D+AL  F+ +  SG  PD 
Sbjct: 185 ISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDS 244

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           +    +L AC+  G + KG Q  HS   K G++        ++DL  +SG   EA  +  
Sbjct: 245 VTIASLLAACSAVGDLRKGKQ-LHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303

Query: 422 KMPMKPDKFLWASLL 436
               + +  LW  +L
Sbjct: 304 SGD-RTNVVLWNLML 317


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 257/460 (55%), Gaps = 33/460 (7%)

Query: 18  LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNCLLDMYAKCGN 76
           LH  S  + SI  SL+       ++     +H+  +KS  +  G FI + L+ MY K G 
Sbjct: 131 LHNSSLLADSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDG-FIGDRLVSMYFKLGY 189

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
             DAQ LFDEM  RD+ S+N+++SG +  G L    N F  M                  
Sbjct: 190 DEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESG------------- 236

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
            QP                  N+ TL SV+SA + +  L  GK +HG +++ G      V
Sbjct: 237 RQP------------------NEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKV 278

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L +MYGK G ++ A Q+F++M  R +VSW +M+  +   G  E+G  LF+ + ++GI
Sbjct: 279 VNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGI 338

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
            P+  T   +L AC D       + +H Y+ R G++     A+AL+++Y+K G +  S+ 
Sbjct: 339 NPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASED 398

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F  +   D ++WT+++AGYA +    +A++ F+L++K G + DH+ F  +L+AC+H+GL
Sbjct: 399 IFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGL 458

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           V++G +YF  + E + +    DHY+C+VDLL RSGR  +A ++I  MPM+P   +W +LL
Sbjct: 459 VEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 518

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           G CR++GN++L K  AE L  ++P +   Y+ ++NIY++A
Sbjct: 519 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 558



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 163/356 (45%), Gaps = 35/356 (9%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+     S++  C    AL+EGK +H  +   G      + N L++MY K G +  A  
Sbjct: 238 QPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 297

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF+EM  R + S+N+M+      G  E+  +LF+ M +          +G      P +A
Sbjct: 298 LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR----------AGI----NPDQA 343

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                             T+ ++L A +     R  + IH YI R GF++D ++ +AL +
Sbjct: 344 ------------------TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 385

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y K G +N +  IF+++ DRD ++WTAM+  Y       E   LF  ++K G+  +  T
Sbjct: 386 LYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 445

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F  +L+AC+     E GK+    M+ +   +P     S +V +  + G +E++ ++   M
Sbjct: 446 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 505

Query: 322 P-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           P  P    W +L+      G  +   E  E LL S    DH  ++ +    + AGL
Sbjct: 506 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLL-SLDPSDHRNYIMLSNIYSAAGL 560


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 246/417 (58%), Gaps = 13/417 (3%)

Query: 67  LLDMYAKCGNISDAQTLFDEM----QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           +L + A+ G + +A+    ++     E DV   N +I+ ++K G +E AR +FD M +R 
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV----SAIQCLRLG 178
             SW  MI  Y R     EALD++  M+N E    ++FT+SSVLSA      A++C    
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRN-EGFKFSEFTISSVLSACGVNCDALEC---- 173

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K++H   ++T  D +  V +AL D+Y KCG I +A Q+F+ M D+  V+W++M+  Y Q 
Sbjct: 174 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 233

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              EE   L+    +  +  N FT + V+ AC++ AA   GKQ+H  + + G+    F A
Sbjct: 234 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 293

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           S+ V MY+KCG++  S  +F+ +   +L  W ++I+G+A++  P + +  FE + + G  
Sbjct: 294 SSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 353

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+ + F  +L+ C H GLV++G ++F  ++  +GL+    HY+C+VD+L R+G   EA +
Sbjct: 354 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYE 413

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +I  +P  P   +W SLL  CR++ NL+LA+ AAE LFE+EPEN   +V ++NIYA+
Sbjct: 414 LIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAA 470



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 160/327 (48%), Gaps = 9/327 (2%)

Query: 118 MPQRDNFS-WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +P+R N S  +  IS    Y+Q  E +   R    + N  SN+  +  +L   +    + 
Sbjct: 17  LPRRSNTSSLSRNISVLASYDQ--EEVSPGR----YSNEFSNRNLVHEILQLCARNGAVM 70

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
             K  HG I+R   + D  + + L + Y KCG +  ARQ+FD M++R +VSW  MIG Y 
Sbjct: 71  EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 130

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           +     E   +F E+   G + + FT + VL+AC  +      K++H    +   D   +
Sbjct: 131 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLY 190

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             +AL+ +Y+KCG ++++ +VF  M     V+W+S++AGY QN   ++AL  +    +  
Sbjct: 191 VGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 250

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            + +      V+ AC++   + +G Q  H++  K G        +  VD+ A+ G   E+
Sbjct: 251 LEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSGFGSNVFVASSAVDMYAKCGSLRES 309

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHG 443
             + S++  K +  LW +++ G   H 
Sbjct: 310 YIIFSEVQEK-NLELWNTIISGFAKHA 335



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 38/339 (11%)

Query: 2   IDILCNQRRLKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I +    R   EAL I  ++ +     S    SS++  C  N    E KK+H     +  
Sbjct: 126 IGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCI 185

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
              +++   LLD+YAKCG I DA  +F+ MQ++   ++++M++G+ +  + E        
Sbjct: 186 DLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE-------- 237

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
                                  EAL LYR  Q       N+FTLSSV+ A S +  L  
Sbjct: 238 -----------------------EALLLYRRAQRMSLE-QNQFTLSSVICACSNLAALIE 273

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK++H  I ++GF S+  V S+  DMY KCGS+ E+  IF ++ ++++  W  +I  + +
Sbjct: 274 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAK 333

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSF 296
             R +E   LF ++ + G+ PN  TF+ +L+ C      E G++    M T  G  P   
Sbjct: 334 HARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVV 393

Query: 297 AASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
             S +V +  + G +  + ++   +P  P    W SL+A
Sbjct: 394 HYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLA 432


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 248/444 (55%), Gaps = 32/444 (7%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L+Q   +NRA  EG   H+ +   G +     SN L++MY+KC                 
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKC----------------- 68

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                         G +E AR LFDEMP R   SW  M+  + +     +AL L+  MQ 
Sbjct: 69  --------------GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQK 114

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            E +  ++FT+SSV+ A +A  C+   K++HG+ ++T  DS+  V +AL D+Y KCG + 
Sbjct: 115 -EGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 173

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +A  +F+ M +R  V+W++M+  Y Q    EE   LF      G+  N FT +  L+ACA
Sbjct: 174 DANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACA 233

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
             AA   GKQV     + G     F  S+L+ MY+KCG +E +  VF+ +   ++V W +
Sbjct: 234 ARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNA 293

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +++G++++    +A+ YFE + + G  P+ I ++ VL+AC+H GLV+KG +YF  +   H
Sbjct: 294 ILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH 353

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            ++    HY+C+VD+L R+G  HEA+D I +MP      +W SLL  CRI+ NL+LA+ A
Sbjct: 354 NVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVA 413

Query: 452 AEALFEIEPENPATYVTMANIYAS 475
           A+ LFEIEP N   +V ++NIYA+
Sbjct: 414 AKHLFEIEPHNAGNHVLLSNIYAA 437



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 145/307 (47%), Gaps = 34/307 (11%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           SS++  C     + E K++H     +     VF+   LLD+YAKCG + DA  +F+ M E
Sbjct: 125 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 184

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R   ++++M++G+ +    E+A  LF                         +A+ L    
Sbjct: 185 RSDVTWSSMVAGYVQNELYEEALVLF----------------------HRAQAMGLEH-- 220

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   N+FT+SS LSA +A   L  GK++     +TG  S+  V S+L DMY KCG 
Sbjct: 221 --------NQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGI 272

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I EA  +F  + +++VV W A++  + +  R  E    F ++ + GI PN  T+  VL+A
Sbjct: 273 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 332

Query: 270 CADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           C+     E G++    M R+    P     S +V +  + G +  +K   + MP     S
Sbjct: 333 CSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 392

Query: 329 -WTSLIA 334
            W SL+A
Sbjct: 393 MWGSLLA 399



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 3/190 (1%)

Query: 250 ELIKSGIRPNAFT-FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           EL+  GIR    +    +L + A + A   G   H  + R+G    +  ++ L++MYSKC
Sbjct: 9   ELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKC 68

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G VE+++K+F+ MP   LVSW +++  + QNG  +KAL  F  + K GT         V+
Sbjct: 69  GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVV 128

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC     V +  Q  H    K  L         ++D+ A+ G   +A  V   MP + D
Sbjct: 129 CACAAKCCVFECKQ-LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD 187

Query: 429 KFLWASLLGG 438
              W+S++ G
Sbjct: 188 -VTWSSMVAG 196


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/448 (34%), Positives = 245/448 (54%), Gaps = 32/448 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +++S++        +  GK++H     +G    V + N L+ MYAKCG            
Sbjct: 211 VFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG------------ 258

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                              SL+ A   F+    +++ +W+AMI+GY +     +AL L+ 
Sbjct: 259 -------------------SLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFS 299

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M +      ++FT   V++A S +     GK++H Y+++ GF+S   V +AL DMY KC
Sbjct: 300 SM-HLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKC 358

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
            SI +AR+ FD + + D+V WT+MIG Y Q G  E+  +L+  +   GI PN  T A VL
Sbjct: 359 SSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVL 418

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC+  AA E GKQ+H    + G+       SAL  MY+KCG +++   VF  MP  D++
Sbjct: 419 KACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVI 478

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW ++I+G +QNG   +ALE FE +   GT+PD++ FV +L+AC+H GLV++G  YF  +
Sbjct: 479 SWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            ++ G+    +HYAC+VD+L+R+G+  EA +      +     LW  +LG CR + N +L
Sbjct: 539 FDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYEL 598

Query: 448 AKRAAEALFEIEPENPATYVTMANIYAS 475
              A E L E+  +  + YV +++IY++
Sbjct: 599 GAYAGEKLMELGSQESSAYVLLSSIYSA 626



 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 251/462 (54%), Gaps = 20/462 (4%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS-NCLLDMYAKCG 75
           I++  S   PS  S +++  ++ RA       H+         GVF + + L+D  A  G
Sbjct: 77  IINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTF-------AGVFTAASTLVD--AAGG 127

Query: 76  NISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
            ++ A  +  +M   RDV   +++++ + K G   +AR +FD MP+R++ SW  MISGY 
Sbjct: 128 RLAHAVAI--KMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYA 185

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
                 EAL L+R+M+  E    N+F  +SVLSA++  + +  GK+IH   ++ G  S  
Sbjct: 186 SQKLAAEALGLFRLMRR-EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIV 244

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +AL  MY KCGS+++A Q F+   D++ ++W+AMI  Y Q G  ++   LFS +  S
Sbjct: 245 SVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLS 304

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GIRP+ FTF GV+NAC+D  A   GKQVH Y+ ++G++   +  +ALV MY+KC ++ ++
Sbjct: 305 GIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDA 364

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           +K F+ +  PD+V WTS+I GY QNG  + AL  +  +   G  P+ +    VL AC+  
Sbjct: 365 RKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSL 424

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             +++G Q  H+   K+G        + +  + A+ G   +   V  +MP + D   W +
Sbjct: 425 AALEQGKQ-IHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR-DVISWNA 482

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPE-NPATYVTMANIYAS 475
           ++ G   +G     K A E   E++ E     YVT  NI ++
Sbjct: 483 MISGLSQNG---CGKEALELFEEMQLEGTKPDYVTFVNILSA 521



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 200/414 (48%), Gaps = 38/414 (9%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S +++L+Q+   NR+L++GK +H+ +  S     V+I+N L+++YAKC            
Sbjct: 8   SFFTALLQYT-HNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQR---------- 55

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY--NQPIEALD 144
                                L +A+ +F+ +  +D  SW  +I+GY ++  +     ++
Sbjct: 56  ---------------------LREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVME 94

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L++ M+  EN+  N  T + V +A S +     G+  H   ++     D  V S+L +MY
Sbjct: 95  LFQRMRA-ENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMY 153

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G   EAR++FD M +R+ VSW  MI  Y  +    E   LF  + +     N F F 
Sbjct: 154 CKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFT 213

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            VL+A         GKQ+H    + G        +ALV MY+KCG+++++ + F      
Sbjct: 214 SVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDK 273

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           + ++W+++I GYAQ+G  DKAL+ F  +  SG +P    FVGV+ AC+  G   +G Q  
Sbjct: 274 NSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQ-V 332

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           H    K G          +VD+ A+     +A      +  +PD  LW S++GG
Sbjct: 333 HDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ-EPDIVLWTSMIGG 385



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 9/278 (3%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L+ GK +H  I+++   S   + ++L ++Y KC  + EA+ +F+++ ++DVVSW  +I  
Sbjct: 22  LQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIING 80

Query: 235 YFQEGRREEG--FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
           Y Q G         LF  +      PNA TFAGV  A +       G+  H    ++   
Sbjct: 81  YSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSC 140

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              F  S+L++MY K G    ++KVF+ MP  + VSW ++I+GYA   +  +AL  F L+
Sbjct: 141 RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLM 200

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
            +     +  VF  VL+A T   LV+ G Q  H I  K+GL         +V + A+ G 
Sbjct: 201 RREEEGENEFVFTSVLSALTLPELVNNGKQ-IHCIAVKNGLLSIVSVGNALVTMYAKCGS 259

Query: 413 FHEAEDVISKMPMKPDK--FLWASLLGGCRIHGNLDLA 448
               +D +       DK    W++++ G    G+ D A
Sbjct: 260 L---DDALQTFETSSDKNSITWSAMITGYAQSGDSDKA 294



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           GK +H  + +       + A++LV++Y+KC  +  +K VF  +   D+VSW  +I GY+Q
Sbjct: 25  GKALHAQIIK-SSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQ 83

Query: 339 NGMPDKA--LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD-KGLQYFHSIKEKHGLTY 395
           +G    +  +E F+ +    T P+   F GV TA +   LVD  G +  H++  K     
Sbjct: 84  HGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAST--LVDAAGGRLAHAVAIKMDSCR 141

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
                + ++++  ++G   EA  V   MP + +   WA+++ G          K AAEAL
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPER-NSVSWATMISGYASQ------KLAAEAL 194


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 234/412 (56%), Gaps = 40/412 (9%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL    + GNI  A+ LFD M ER+V ++ TM++G  + GS+ +AR LFD MP+R+  
Sbjct: 164 NILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVV 223

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW AMISGY R +   EA DL+  M   + +  N                          
Sbjct: 224 SWNAMISGYARNHMIDEAHDLFMKMPTRDIASWN-------------------------- 257

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           IM TGF  ++              ++  A+++FDKM  R+VV+WT M+  Y Q  + E  
Sbjct: 258 IMITGFIQNK--------------NLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETA 303

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF+ ++  GIRPN  TF G ++AC++ A    G+QVH  + +  +   +F  S L+++
Sbjct: 304 LQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNL 363

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG +  ++KVFN     D++SW  +IA YA +G+  +A+  +E + ++G +P+ + +
Sbjct: 364 YAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTY 423

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VG+L+AC+H+GLVD+GL+ F  + +   +    +HY C++DL +R+GR  +A+ +I  + 
Sbjct: 424 VGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLK 483

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++P   +W +LLGGC  HGN  +   AA  L E EP N  TY  + NIYASA
Sbjct: 484 VEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASA 535



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 177/401 (44%), Gaps = 57/401 (14%)

Query: 80  AQTLFDEMQERDVCSY----NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI----- 130
           A   +D     DV ++    N  ++     G +  AR LFD  P RD  SWTA++     
Sbjct: 19  AAFFYDSAAAVDVSNHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYAC 78

Query: 131 ---------------------------SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
                                      SGY R  +  EA  L+  M    N VS    L 
Sbjct: 79  QGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPE-RNVVSWNTMLE 137

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           +  S+        L    +G  +R     D   W+ L     + G+I++AR++FD+M +R
Sbjct: 138 AYTSSGRVGDACTL---FNGMPVR-----DAGSWNILLAALVRSGNIDKARKLFDRMPER 189

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA-DHAAEELGKQV 282
           +V++WT M+    + G   E  ALF  + +     N  ++  +++  A +H  +E     
Sbjct: 190 NVMAWTTMVAGIARSGSVNEARALFDGMPER----NVVSWNAMISGYARNHMIDEAHDLF 245

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
               TR   D  S+  + ++  + +  N+E ++++F+ MPR ++V+WT+++ GY Q+   
Sbjct: 246 MKMPTR---DIASW--NIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQS 300

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           + AL+ F  +L  G +P+ + F+G + AC++   + +G Q  H +  K    +     + 
Sbjct: 301 ETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG-QQVHQMICKTPFQFDTFIEST 359

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +++L A+ G    A  V + +  + D   W  ++     HG
Sbjct: 360 LMNLYAKCGEIILARKVFN-LSKEKDVISWNGMIAAYAHHG 399



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 129/266 (48%), Gaps = 20/266 (7%)

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G +++AR++FD+  DRDVVSWTA++  Y  +G   +  ALF    +   R N  T+  +L
Sbjct: 49  GRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD---RPDARRNVVTWTALL 105

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +  A     +  + + G M       +    + ++  Y+  G V ++  +FNGMP  D  
Sbjct: 106 SGYARAGRVDEAEALFGRMPERNVVSW----NTMLEAYTSSGRVGDACTLFNGMPVRDAG 161

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW  L+A   ++G  DKA + F+ +     + + + +  ++     +G V++    F  +
Sbjct: 162 SWNILLAALVRSGNIDKARKLFDRM----PERNVMAWTTMVAGIARSGSVNEARALFDGM 217

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            E++ +++ A     ++   AR+    EA D+  KMP + D   W  ++ G   + NL+ 
Sbjct: 218 PERNVVSWNA-----MISGYARNHMIDEAHDLFMKMPTR-DIASWNIMITGFIQNKNLE- 270

Query: 448 AKRAAEALFEIEPENPATYVTMANIY 473
             RA E   ++   N  T+ TM N Y
Sbjct: 271 --RAQELFDKMPRRNVVTWTTMMNGY 294



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 38/214 (17%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +   +  C     L EG++VH  +  + F+   FI + L+++YAKCG I  A+ +
Sbjct: 317 PNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKV 376

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+  +E+DV S+N M                               I+ Y  +   +EA+
Sbjct: 377 FNLSKEKDVISWNGM-------------------------------IAAYAHHGVGLEAI 405

Query: 144 DLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIM--RTGFDSDEVVWSAL 200
            LY  MQ  EN    N  T   +LSA S    +  G  I  Y++  R+    DE  ++ L
Sbjct: 406 HLYEKMQ--ENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDE-HYTCL 462

Query: 201 SDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            D+  + G + +A+++   + V+     W A++G
Sbjct: 463 IDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLG 496


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/494 (32%), Positives = 272/494 (55%), Gaps = 37/494 (7%)

Query: 1   AIDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           AI       + KEA  +  Q+      P+    SS ++ C +      G  +H  ++  G
Sbjct: 76  AIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQKFG 135

Query: 57  FK---PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           F     G+++   L+D Y K G++  A+ +FDEM ER+V S+N+M++G+ K G L  A+ 
Sbjct: 136 FSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQR 195

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNFEN---SVSNKFTLSSVLSA 168
           +FDE+PQ+D  SW +MISGY R     +A  L++ M  +NF +    +S       + SA
Sbjct: 196 VFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSA 255

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
                             R+ FD+    + V W  +   Y KCG ++ A ++FD++  +D
Sbjct: 256 ------------------RSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKD 297

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPNAFTFAGVLNACADHAAEELGKQV 282
           ++ + AMI  Y Q  R  E   LF+ ++     ++P+  T A V++AC+       G  +
Sbjct: 298 LLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWI 357

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
             YM R+G +     A+AL+ +Y+KCG+++ + ++F+G+ + DLV++T++I G   NG  
Sbjct: 358 ESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKA 417

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
             A++ F+ ++ +   P+ I F+G+LTA  HAGLV++G + F S+K K+ L  + DHY  
Sbjct: 418 IDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGI 476

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           +VDL  R+GR  EA ++I  MPM+P   +W +LL  CR+H N++  + AA+  FE+EP+ 
Sbjct: 477 MVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDT 536

Query: 463 PATYVTMANIYASA 476
                 ++NIYAS 
Sbjct: 537 TGYRSLLSNIYASG 550



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 179/385 (46%), Gaps = 34/385 (8%)

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D+FSW   I    ++ Q  EA  LY  MQ +       F LSS L A + I     G  I
Sbjct: 69  DSFSWACAIRFSTQHGQFKEAFALYVQMQRW-GLCPTTFALSSALKACARIAYRMGGISI 127

Query: 182 HGYIMRTGFD--SDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           HG + + GF    D + V +AL D Y K G +  AR++FD+M +R+VVSW +M+  Y + 
Sbjct: 128 HGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS 187

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ------------VHGYM 286
           G       +F E+ +  +       +G   A     A  L +Q            + G++
Sbjct: 188 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHV 247

Query: 287 -------TRIGYDPY----SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
                   R  +D      + +   ++  YSKCG+V+++ ++F+ +   DL+ + ++IA 
Sbjct: 248 EFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIAC 307

Query: 336 YAQNGMPDKALEYFELLLKS--GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           YAQN  P++AL  F  +L      QPD +    V++AC+  G +  G  +  S   + G+
Sbjct: 308 YAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFG-PWIESYMRRLGI 366

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN-LDLAKRAA 452
                    ++DL A+ G   +A ++   +  K D   + +++ GC I+G  +D  K   
Sbjct: 367 EMDGHLATALLDLYAKCGSIDKAYELFHGL-RKKDLVAYTAMILGCGINGKAIDAIKLFD 425

Query: 453 EAL-FEIEPENPATYVTMANIYASA 476
           E +  +I P N  T++ +   Y  A
Sbjct: 426 EMVDAQIFP-NSITFIGLLTAYNHA 449


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/516 (35%), Positives = 260/516 (50%), Gaps = 75/516 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P P +Y  LI+      A + G   H+++   G     FI N +LDMYAK G +  A+ L
Sbjct: 98  PQPFVYIYLIKL-----AGKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNL 152

Query: 84  FDEMQERDVCSYNTMISG-------------------------------FTKGGSLEQAR 112
           F++M ER +  +N+MISG                               + K G LE AR
Sbjct: 153 FEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESAR 212

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172
             FDEMP+R   SW AM S Y +   P EAL+L+  M   E    +  T    +S+ S+I
Sbjct: 213 RYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGITPDDTTWVVTISSCSSI 271

Query: 173 -------QCLRLGKEIHGY--------------------IMRTGFDS-----DEVVWSAL 200
                    LR+  + H                      I R  FD      + V W+ +
Sbjct: 272 GDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIM 331

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPN 259
              Y + G ++ AR++FD M  RDVVSW +MI  Y Q G       LF E+I    I+P+
Sbjct: 332 ISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPD 391

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T A VL+AC    A +L   V   +            ++L+ MYSKCG+V ++ ++F 
Sbjct: 392 EVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQ 451

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D+VS+ +LI+G+A NG   +A++    + + G +PDH+ ++GVLTAC+HAGL+++
Sbjct: 452 TMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNE 511

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G   F SI+       T DHYAC+VDLL R+G   EA+ +I  MPMKP   ++ SLL   
Sbjct: 512 GKNVFKSIQAP-----TVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNAS 566

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           RIH  + L + AA  LFE+EP+N   YV ++NIYAS
Sbjct: 567 RIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYAS 602



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/368 (19%), Positives = 143/368 (38%), Gaps = 82/368 (22%)

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE----ARQ 215
           + L ++ S +S I+ LR   + HG+++     S    W +L  +   C  ++        
Sbjct: 2   YELVALASKISNIRQLR---QFHGHLVHNSLHSHNY-WVSL--LLINCTRLHAHPAYVDS 55

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           IF      D   ++ M+  Y + G   +  +LF       +RP  F +  ++       A
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LA 110

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK------------------- 316
            + G   H Y+ ++G+    F  +A++ MY+K G V+ ++                    
Sbjct: 111 GKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 317 ------------VFNGMPRPDLVSWTSLIAGYAQNG-----------MPDK--------- 344
                       +FN MP  ++++WTS++ GYA+ G           MP++         
Sbjct: 171 CWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230

Query: 345 -----------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
                      AL  F  +L+ G  PD   +V  +++C+  G           I +KH +
Sbjct: 231 SAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKH-I 289

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
              +     ++D+ A+ G    A ++  ++  + +   W  ++      G L LA+    
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARE--- 346

Query: 454 ALFEIEPE 461
            LF+  P+
Sbjct: 347 -LFDNMPK 353


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/518 (31%), Positives = 264/518 (50%), Gaps = 72/518 (13%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+SLI  C   ++L   K +H+H+  SG     F  + L+D Y KC  I++A+ LFDEM 
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEM------------------------------ 118
            R + ++N+MIS     G  ++A  L+  M                              
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 119 ----------PQRDNFSWTAMISGYVRYNQPIEALDLY---------------------- 146
                        D F  T ++  Y ++ +  +A  ++                      
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHG 182

Query: 147 ---RMMQNFENSVS-----NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
                ++ FE+ V      N++TL+SVL +   +  L  GK IHG +++ G +S     +
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQT 242

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           +L  MY KC  + ++ ++F+ +     V+WT+ I    Q GR E   ++F E+++  I P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISP 302

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N FT + +L+AC+  A  E G+Q+H    ++G D   F  +AL+H+Y KCGNVE ++ VF
Sbjct: 303 NHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVF 362

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + +   D+VS  ++I  YAQNG   +ALE FE L K G +P+ + F+ +L AC +AGLV+
Sbjct: 363 DSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVE 422

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G Q F  I+  H +  T DHY C++DLL R+ RF EA  +I +    PD   W +LL  
Sbjct: 423 EGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEE-GKNPDVIQWRTLLNA 481

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C+IHG +++A++  + + +  P +  T++ + NIYASA
Sbjct: 482 CKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASA 519


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 264/515 (51%), Gaps = 64/515 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++ L   C   RA+EEG++VH H    GF   ++++N L+ MY+ CG + DA+ +
Sbjct: 101 PDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKV 160

Query: 84  FD-------------------------------EMQERDVCSYNTMISGFTKGGSLEQAR 112
           FD                                M ER   + ++M+S F + G +++AR
Sbjct: 161 FDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEAR 220

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172
            +FD + ++D F+WTAMIS + R  +  EAL L+  M+  E    ++  +  V++A + +
Sbjct: 221 KVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRG-EGWPVDEAVMVCVVAACARL 279

Query: 173 QCLRLGKEIHGYIMRTG---------------------------FDS----DEVVWSALS 201
           +  R G+  HG   R G                           FDS    D+  W+++ 
Sbjct: 280 EVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMI 339

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
             Y K GS+ +A+++F  M D+D VSWT MI    Q  +  E   +F+ +   GI+P+  
Sbjct: 340 AGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEV 399

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   V++AC + ++ E GK +H Y+    Y       ++L+ MY KCG +E++ +VF+ M
Sbjct: 400 TLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTM 459

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKG 380
                  W ++I G A NG+  K+L+ F  +  S T  P+ I F GVL+AC HAGLV++G
Sbjct: 460 EERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEG 519

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
             +F  ++ K+ +     HY C+VDLL R+G   EAE++I  MPM PD   W +LLG C 
Sbjct: 520 QHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCW 579

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            HG+ ++ +R    L  ++P +   +  ++NIYAS
Sbjct: 580 KHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYAS 614



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 173/437 (39%), Gaps = 102/437 (23%)

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           + FS   ++     +  P   L LY  M    ++  + +T + + +A +  + +  G+++
Sbjct: 70  NAFSCNMVLKAAREHGLPHLCLPLYASM----SAAPDCYTHTILAAACATRRAIEEGRQV 125

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H + +R GF  +  + +AL  MY  CG + +AR++FD     D VSW  ++  Y Q    
Sbjct: 126 HCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDV 185

Query: 242 EEGFALFSELIKSGI---------------------------RPNAFTFAGVLN------ 268
           ++   +F+ + + G                            R + FT+  +++      
Sbjct: 186 DQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNG 245

Query: 269 -----------------------------ACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
                                        ACA       G+  HG   R G        +
Sbjct: 246 KFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQN 305

Query: 300 ALVHMYS-------------------------------KCGNVENSKKVFNGMPRPDLVS 328
           AL+HMYS                               K G+V+++K++F  MP  D VS
Sbjct: 306 ALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVS 365

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT++I+G  QN    +AL  F  +   G +PD +  V V++ACT+   +++G      I+
Sbjct: 366 WTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIR 425

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           E H  T T      ++D+  + G    A +V   M  +     W +++ G  ++G   L 
Sbjct: 426 E-HQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTP-CWNAVIVGLAMNG---LV 480

Query: 449 KRAAEALFEIEPENPAT 465
            ++ +   E+E  + AT
Sbjct: 481 MKSLDMFSEMESSSTAT 497



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 45/251 (17%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL I + +      P      S+I  C    +LE+GK +H +++   +   V +   L+
Sbjct: 381 EALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLI 440

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY KCG +  A  +FD M+ER    +N +I G    G +                    
Sbjct: 441 DMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLV-------------------- 480

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI-----HG 183
                      +++LD++  M++   +  N+ T + VLSA      +  G+       H 
Sbjct: 481 -----------MKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHK 529

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRRE 242
           Y +          +  + D+ G+ G + EA  + + M +  DV +W A++G  ++ G  E
Sbjct: 530 YHIIPNIRH----YGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNE 585

Query: 243 EGFALFSELIK 253
            G  +  +L+ 
Sbjct: 586 VGERVGRKLVN 596


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 243/439 (55%), Gaps = 34/439 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           +++G+++H + + SG  P V +   ++ MY KCG + DA+  F+E+Q ++  ++N M++ 
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           +   G   +A  LF EM +R             R  +P                  +KF+
Sbjct: 107 YKLDGRDREALELFREMCERS------------RSARP------------------DKFS 136

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            S  + A S ++ L  G+EIH  + R G     D VV +AL +MY KCG + EAR++FD 
Sbjct: 137 FSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDS 196

Query: 220 MV-DRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEE 277
           +  D D V W AMI  Y Q GR ++   L+  +   + + P   TF  V++ CA+ +A +
Sbjct: 197 IRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALK 256

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+ +H  +    +D     ++ALVHMY KCG ++ +  VF+ M   D +SW ++I+ YA
Sbjct: 257 QGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYA 316

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +G  D+AL  ++ +   G +P  + FVG+L+AC+H GLV  GL YF+ +++ H +  + 
Sbjct: 317 YHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSV 376

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            H+ CI+DLL R GR  EAE V+  MP++ +   W SLLG C+ HG+L    RAA+ + +
Sbjct: 377 PHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVD 436

Query: 458 IEPENPATYVTMANIYASA 476
             P     YV ++NIYA+A
Sbjct: 437 RVPWTSGGYVLLSNIYAAA 455



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 198/430 (46%), Gaps = 77/430 (17%)

Query: 10  RLKEALQILHQI------SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG--FKPGV 61
           R +EAL++  ++      + P    +S  I+ C     LE+G+++H  L+  G      V
Sbjct: 112 RDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDV 171

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            +   LL+MY+KCG++ +A+ +FD ++ + D   +N MI+ + + G  +Q          
Sbjct: 172 VVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQ---------- 221

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                                ALDLYR M +  +    + T  +V+   + +  L+ G+ 
Sbjct: 222 ---------------------ALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRA 260

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           IH  +  T FD++ +V +AL  MYGKCG ++EA  +F  M  +D +SW  +I  Y   G 
Sbjct: 261 IHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGH 320

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            ++   L+ E+   G++P   TF G+L+AC+           HG +   G D +      
Sbjct: 321 SDQALLLYQEMDLQGVKPTEVTFVGLLSACS-----------HGGLVADGLDYFY----- 364

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQP 359
                     +++  ++     +P +  +  +I    + G   +A    EL+LKS   Q 
Sbjct: 365 ---------RMQDDHRI-----KPSVPHFGCIIDLLGRGGRLAEA----ELVLKSMPIQA 406

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           + + ++ +L AC   G + +G++    + ++  + +T+  Y  + ++ A +GR+ + E +
Sbjct: 407 NAVQWMSLLGACKTHGDLKRGVRAADQVVDR--VPWTSGGYVLLSNIYAAAGRWKDVEKI 464

Query: 420 ISKMPMKPDK 429
              M  +  K
Sbjct: 465 RKIMAARGVK 474



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 159/315 (50%), Gaps = 9/315 (2%)

Query: 141 EALDLYRMM-QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           EAL  +R M Q+ E      F++     A      +  G+EIH Y   +G   + VV +A
Sbjct: 12  EALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTA 71

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK--SGIR 257
           +  MYGKCG +++AR  F+++  ++ V+W AM+  Y  +GR  E   LF E+ +     R
Sbjct: 72  VISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSAR 131

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSKCGNVENSK 315
           P+ F+F+  + AC++    E G+++H  + R G + +      +AL++MYSKCG++E ++
Sbjct: 132 PDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEAR 191

Query: 316 KVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALE-YFELLLKSGTQPDHIVFVGVLTACTH 373
           KVF+ +    D V W ++IA YAQ+G   +AL+ Y  +   +   P    FV V+  C  
Sbjct: 192 KVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAE 251

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
              + +G +  H+                +V +  + G   EA DV   M +K D+  W 
Sbjct: 252 LSALKQG-RAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLK-DEISWN 309

Query: 434 SLLGGCRIHGNLDLA 448
           +++     HG+ D A
Sbjct: 310 TIISSYAYHGHSDQA 324



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 117/250 (46%), Gaps = 13/250 (5%)

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL--GKQVHGYMTRIGYD 292
           +   G   E    F  + +SG RP+  TF+ +L A A   A  +  G+++H Y    G  
Sbjct: 4   FSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLL 63

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-EL 351
           P     +A++ MY KCG +++++  F  +   + V+W +++  Y  +G   +ALE F E+
Sbjct: 64  PNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREM 123

Query: 352 LLKS-GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLA 408
             +S   +PD   F   + AC++   +++G +  H +  + G     D      ++++ +
Sbjct: 124 CERSRSARPDKFSFSIAIEACSNLEDLEQGRE-IHEMLRREGKELHKDVVVGTALLNMYS 182

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPA 464
           + G   EA  V   +    D   W +++     HG     LDL  R+     ++ P+   
Sbjct: 183 KCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLY-RSMHDTTDLAPKQ-G 240

Query: 465 TYVTMANIYA 474
           T+VT+ ++ A
Sbjct: 241 TFVTVIDVCA 250


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/413 (36%), Positives = 238/413 (57%), Gaps = 41/413 (9%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL    + G++  A+ LF  M ERDV ++ TM+ G  + G +++AR LFD MP+R+  
Sbjct: 171 NILLATLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVV 230

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW AMISGY R ++  EALDL+  M   + +  N                          
Sbjct: 231 SWNAMISGYTRNHRIDEALDLFMKMPERDIASCN-------------------------- 264

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           IM TGF  ++               +  AR++FD+M +R+VV+WT M+  Y +  + E  
Sbjct: 265 IMVTGFIQNK--------------DLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELA 310

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LFS ++ +G RPN  TF G L+AC+D AA   GKQVH  + +  +   +F  SAL+++
Sbjct: 311 LGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNV 370

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG +  ++K+F+     DL+SW  +IA YA +G+  +A+  +E + ++G +P+ + +
Sbjct: 371 YAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTY 430

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           V +L+AC+H+GLVD+GL+ F S+     +    +HY C++DL +R+GR  +A+ +I  + 
Sbjct: 431 VVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLK 490

Query: 425 MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +KP    +W++LLGGC  HGN  +   AA  L + EP+N  TY  ++NIYASA
Sbjct: 491 IKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASA 543



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 125/302 (41%), Gaps = 53/302 (17%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I+     G +  AR LFD  P  D  SWTA++S Y R     +A +L+         
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFD-------- 97

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
                                          R     + V W+AL   Y +   ++EA  
Sbjct: 98  -------------------------------RPDARRNVVTWTALLSGYARARLVDEAEA 126

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHA 274
           +F +M  R+VVSW  M+  Y   GR  +  ALF  + ++     N      V +   D A
Sbjct: 127 LFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKA 186

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
            E  G+     +          A + +V   ++ G V+ ++ +F+ MP  ++VSW ++I+
Sbjct: 187 RELFGRMPERDV---------MAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMIS 237

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GY +N   D+AL+ F  + +      +I+  G +        + +  + F  + E++ +T
Sbjct: 238 GYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKD----LKRARELFDEMPERNVVT 293

Query: 395 YT 396
           +T
Sbjct: 294 WT 295



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 35/200 (17%)

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+   +  G V +++K+F+G P  D+VSWT+L++ YA+ GM   A E F+   +   + +
Sbjct: 48  LIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFD---RPDARRN 104

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT------------------------ 396
            + +  +L+    A LVD+    F  + +++ +++                         
Sbjct: 105 VVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPV 164

Query: 397 --ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
             A  +  ++  L RSG   +A ++  +MP + D   W +++ G    G +D A+     
Sbjct: 165 RDAGSWNILLATLVRSGSVDKARELFGRMPER-DVMAWTTMVDGVARSGKVDEAR----V 219

Query: 455 LFEIEPE-NPATYVTMANIY 473
           LF+  PE N  ++  M + Y
Sbjct: 220 LFDSMPERNVVSWNAMISGY 239



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P+   +   +  C    AL EGK+VH  +  + F+   F+ + L+++YAKCG I  A+
Sbjct: 322 TRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLAR 381

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYN 137
            LFD  +E+D+ S+N +I+ +   G   +A  L+++M +     ++ ++  ++S      
Sbjct: 382 KLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSG 441

Query: 138 QPIEALDLYRMMQN 151
              E L ++  M N
Sbjct: 442 LVDEGLKIFESMVN 455


>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 260/518 (50%), Gaps = 75/518 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLDMYAKCGNISDAQTLFDE- 86
           Y S +Q C        G  +H+     GF P  +F  N +L+ Y KCG +S    LFDE 
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLK-GFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEM 276

Query: 87  ----------------------------------------------------MQERDVCS 94
                                                               + +R +CS
Sbjct: 277 PERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICS 336

Query: 95  Y------------------NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           Y                  N  ++   +   L +A  +F+    +D  SW AM++GY++ 
Sbjct: 337 YQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQL 396

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
               E    +R M N E+   + FT +S+L+ ++A+   RLG ++HG ++++G+ +D  V
Sbjct: 397 -AYFELPKFWRRM-NLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICV 454

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L DMY K   + +  + FD+M   DV SWT M     Q G   +   +  E+   G+
Sbjct: 455 GNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGV 514

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           R N FT A  LN+CA+ A+ E GK+ HG   ++G D      +AL+ MY+KCG + ++  
Sbjct: 515 RLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANV 574

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF  M    +VSWT++I G+A NG   +AL+ F+ + K   +P+HI F+ VL AC+  G 
Sbjct: 575 VFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGF 634

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +D+  +YF S+   HG+  + DHY C+V+LL R+G   EAED+I +MP +P   +W +LL
Sbjct: 635 IDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLL 694

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           G C +HG+++  KRAAE    ++  +P+TY+ ++N++A
Sbjct: 695 GACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNMFA 732



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 19/255 (7%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +AL++++++ +    +     ++ +  C    ++EEGKK H      G    V + N LL
Sbjct: 501 KALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALL 560

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNF 124
           DMYAKCG ++ A  +F  M ER V S+ TMI GF   G  ++A  +FDEM     + ++ 
Sbjct: 561 DMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHI 620

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           ++  +++   +     EA   +  M        ++     +++ +    C+   KE    
Sbjct: 621 TFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCI---KEAEDL 677

Query: 185 IMRTGFDSDEVVWSALSDMYGKC---GSINEARQIFDKM--VDRDVVSWTAMIGRYFQEG 239
           I++  F    +VW  L    G C   G I   ++  +    +DR+  S   ++   F  G
Sbjct: 678 ILQMPFQPGSLVWQTL---LGACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNMFAGG 734

Query: 240 RREEGFALFSELIKS 254
              +   +  EL+++
Sbjct: 735 DNWDSVGILRELMET 749


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/491 (32%), Positives = 253/491 (51%), Gaps = 63/491 (12%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +Q L     P+   +  L++     + ++EG++VH+ +  +GF    F+S  LL  Y  C
Sbjct: 80  MQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVAC 139

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G +   + +FDEM++  +                                 WT +I  YV
Sbjct: 140 GLVGKGRQVFDEMRQPGL-------------------------------VLWTLIIRAYV 168

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
               P +AL+L+R M+       +   +S+V+SA   +  L + K +H +I ++G + D 
Sbjct: 169 CVTFPEKALELFRTMREV-GLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDA 227

Query: 195 VVWSALSDMYGKCGSINEA-------------------------------RQIFDKMVDR 223
            V S L   YG+CGS++ A                               +Q+F  M DR
Sbjct: 228 FVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDR 287

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVVSW +MIG + + G+ +E    F E+  SG+ PNA T    L+ACA H A + G  +H
Sbjct: 288 DVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIH 347

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y+ +   +      S+L+ MYSKCG+++ + ++F    R DL +WTS++ G A +G  +
Sbjct: 348 AYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGE 407

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           KAL YF  + ++  QPD +  VGVL+AC HAGL+D+G  YF S+++  GL    +HY C+
Sbjct: 408 KALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCM 467

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLL R G   EA D+I  MPM+ ++ +W + L  CR+H N++L + AA  L  ++P +P
Sbjct: 468 VDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDP 527

Query: 464 ATYVTMANIYA 474
              V ++N+YA
Sbjct: 528 WARVMLSNMYA 538



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 177/388 (45%), Gaps = 44/388 (11%)

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIH 182
           F W  MI   V          L   MQ     +  N  T   +L A+ + Q ++ G+E+H
Sbjct: 55  FVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVH 114

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
             ++RTGF   E V  AL   Y  CG + + RQ+FD+M    +V WT +I  Y      E
Sbjct: 115 ASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPE 174

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   LF  + + G+ P+    + V++AC       + K +H ++ + G +  +F +S L+
Sbjct: 175 KALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLI 234

Query: 303 HMYSKCG-------------------------------NVENSKKVFNGMPRPDLVSWTS 331
             Y +CG                               N+E  K++F  MP  D+VSW S
Sbjct: 235 STYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I G+A+ G   +AL +F  +  SG  P+ +  +  L+AC   G +D G  + H+  +K+
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG-AWIHAYVDKN 353

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA--- 448
            +       + ++D+ ++ G   +A  +  +   + D F W S++ G  +HG  + A   
Sbjct: 354 DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAMHGRGEKALHY 412

Query: 449 -KRAAEALFEIEPENPATYVTMANIYAS 475
             +  EA  +++P++    VTM  + ++
Sbjct: 413 FSKMKEA--QVQPDD----VTMVGVLSA 434


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 248/455 (54%), Gaps = 34/455 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +SS +  C     + +G+++ +   +SG+     + N L++MY+KC         
Sbjct: 161 PDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC--------- 211

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                 GSLE AR +FD +  RD  +W  MISGY +     +AL
Sbjct: 212 ----------------------GSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQAL 249

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L++ M    +   N  T   +L+A + ++ L  G+ IH  +   G++SD V+ + L +M
Sbjct: 250 ELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNM 308

Query: 204 YGKCGS-INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           Y KC S + EARQ+F+++  RDV++W  +I  Y Q G+ ++   +F ++    + PN  T
Sbjct: 309 YTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEIT 368

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            + VL+ACA   A+  GK VH  +            ++L++MY++CG+++++  VF  + 
Sbjct: 369 LSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR 428

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              LVSW++LIA YAQ+G     LE+F  LL+ G   D +  V  L+AC+H G++ +G+Q
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQ 488

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            F S+   HGL     H+ C+VDLL+R+GR   AE++I  MP  PD   W SLL GC++H
Sbjct: 489 SFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLH 548

Query: 443 GNLDLAKRAAEALFEIEPENPATYVT-MANIYASA 476
            +   A R A+ LFE+E E+  + VT ++N+YA A
Sbjct: 549 NDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 229/479 (47%), Gaps = 24/479 (5%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-----VFISN 65
           + +AL + H I HP+   ++ ++    +N    E    +  +   G +P      V I  
Sbjct: 8   VADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV 67

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
           C      K G +  A  L  ++ E D+     +I+ + +   LE AR  FDEM ++   +
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 126 WTAMISGYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           W A+I+GY R      AL +Y+ M  ++ E    +  T SS L A S +  +  G+EI  
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEA 187

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
             + +G+ SD +V +AL +MY KCGS+  AR++FD++ +RDV++W  MI  Y ++G   +
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF  +  +  +PN  TF G+L AC +    E G+ +H  +   GY+      + L++
Sbjct: 248 ALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLN 307

Query: 304 MYSKC-GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
           MY+KC  ++E +++VF  +   D+++W  LI  Y Q G    AL+ F+ +      P+ I
Sbjct: 308 MYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEI 367

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV---DLLARSGRFHEAEDV 419
               VL+AC   G   +G       K  H L  +    A +V    L+    R    +D 
Sbjct: 368 TLSNVLSACAVLGAKRQG-------KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 420 ISKMPMKPDKFL--WASLLGGCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
           +       DK L  W++L+     HG+   ++   E  +E+  E   A  VTM +  ++
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGH---SRTGLEHFWELLQEGLAADDVTMVSTLSA 476



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 180/357 (50%), Gaps = 41/357 (11%)

Query: 13  EALQILHQI--SHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +AL++  ++  + P P++ +   L+  C     LE+G+ +H  +K  G++  + I N LL
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLL 306

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           +MY KC +                              SLE+AR +F+ +  RD  +W  
Sbjct: 307 NMYTKCSS------------------------------SLEEARQVFERLRTRDVITWNI 336

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I  YV+Y Q  +ALD+++ MQ  EN   N+ TLS+VLSA + +   R GK +H  I   
Sbjct: 337 LIVAYVQYGQAKDALDIFKQMQ-LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
              +D V+ ++L +MY +CGS+++   +F  + D+ +VSW+ +I  Y Q G    G   F
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHF 455

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG---YDPYSFAASALVHMY 305
            EL++ G+  +  T    L+AC+      L + V  +++ +G     P       +V + 
Sbjct: 456 WELLQEGLAADDVTMVSTLSACSHGGM--LKEGVQSFLSMVGDHGLAPDYRHFLCMVDLL 513

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           S+ G +E ++ + + MP  PD V+WTSL++G   +    +A    + L +  ++ +H
Sbjct: 514 SRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 201/382 (52%), Gaps = 16/382 (4%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K GS+  A  +F  +   ++ SWT +++ + R     EAL  YR M   E    +   
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMV-LEGLRPDGAM 60

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
               +   S+ + L+ G+ +H  I+ T   + D ++ +AL  MY +C  +  AR+ FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS---GIRPNAFTFAGVLNACADHAAEE 277
             + +V+W A+I  Y + G       ++ +++     G++P+A TF+  L AC+      
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G+++       GY   S   +AL++MYSKCG++E+++KVF+ +   D+++W ++I+GYA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           + G   +ALE F+ +  +  +P+ + F+G+LTACT+   +++G      +KE HG  Y +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE-HG--YES 297

Query: 398 DHYA--CIVDLLAR-SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
           D      ++++  + S    EA  V  ++  + D   W  L+     +G    AK A + 
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYGQ---AKDALDI 353

Query: 455 LFEIEPENPA-TYVTMANIYAS 475
             +++ EN A   +T++N+ ++
Sbjct: 354 FKQMQLENVAPNEITLSNVLSA 375



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 131/270 (48%), Gaps = 9/270 (3%)

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MYGKCGS+ +A  +F  +   + VSWT ++  + + G   E    +  ++  G+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNGM 321
           F   +  C+     + G+ +H  +       +     +AL+ MY++C ++E ++K F+ M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALE-YFELLLKS--GTQPDHIVFVGVLTACTHAGLVD 378
            +  LV+W +LIAGY++NG    AL+ Y +++ KS  G +PD I F   L AC+  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G +   +     G    +     ++++ ++ G    A  V  ++  + D   W +++ G
Sbjct: 181 QGRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISG 238

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVT 468
               G    A +A E    + P +P   V 
Sbjct: 239 YAKQG---AATQALELFQRMGPNDPKPNVV 265


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/473 (32%), Positives = 267/473 (56%), Gaps = 15/473 (3%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF-----ISNCLLDMY 71
           +L QI +PS  I++S+I+    +        ++  +  +G+ P  F     +  C +   
Sbjct: 60  VLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIAD 119

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
             CG    +  +     E D  +   ++  +     ++    +FD +P+ +  +WT +I+
Sbjct: 120 QDCGKCIHS-CIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIA 178

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           GYV+ NQP EAL ++  M ++ N   N+ T+ + L A +  + +  G+ +H  I + G+D
Sbjct: 179 GYVKNNQPYEALKVFEDMSHW-NVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYD 237

Query: 192 -------SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
                  S+ ++ +A+ +MY KCG +  AR +F+KM  R++VSW +MI  Y Q  R +E 
Sbjct: 238 PFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEA 297

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF ++  SG+ P+  TF  VL+ CA   A  LG+ VH Y+ + G       A+AL+ M
Sbjct: 298 LDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDM 357

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIV 363
           Y+K G + N++K+F+ + + D+V WTS+I G A +G  ++AL  F+ + + S   PDHI 
Sbjct: 358 YAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHIT 417

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           ++GVL AC+H GLV++  ++F  + E +G+    +HY C+VDLL+R+G F EAE ++  M
Sbjct: 418 YIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETM 477

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            ++P+  +W +LL GC+IH N+ +A +    L E+EP     ++ ++NIYA A
Sbjct: 478 TVQPNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKA 530



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 190/394 (48%), Gaps = 18/394 (4%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF------TKGGSLEQARNLFDEM 118
           N +L + AKC ++ + + L   +           +S        ++ G +  A  +  ++
Sbjct: 5   NTILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQI 64

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRL 177
                + W +MI G+V  + P  ++ LYR M   EN  S + FT   VL A   I     
Sbjct: 65  HNPSVYIWNSMIRGFVNSHNPRMSMLLYRQM--IENGYSPDHFTFPFVLKACCVIADQDC 122

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK IH  I+++GF++D    + L  MY  C  +    ++FD +   +VV+WT +I  Y +
Sbjct: 123 GKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVK 182

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS-- 295
             +  E   +F ++    + PN  T    L ACA     + G+ VH  + + GYDP+   
Sbjct: 183 NNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMST 242

Query: 296 -----FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                  A+A++ MY+KCG ++ ++ +FN MP+ ++VSW S+I  Y Q     +AL+ F 
Sbjct: 243 SNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFF 302

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            +  SG  PD   F+ VL+ C H   +  G Q  H+   K G+         ++D+ A++
Sbjct: 303 DMWTSGVYPDKATFLSVLSVCAHQCALALG-QTVHAYLLKTGIATDISLATALLDMYAKT 361

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           G    A+ + S +  K D  +W S++ G  +HG+
Sbjct: 362 GELGNAQKIFSSL-QKKDVVMWTSMINGLAMHGH 394


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 264/515 (51%), Gaps = 64/515 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    ++ L   C   RA+EEG++VH H    GF   ++++N L+ MY+ CG + DA+ +
Sbjct: 101 PDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKV 160

Query: 84  FD-------------------------------EMQERDVCSYNTMISGFTKGGSLEQAR 112
           FD                                M ER   + ++M+S F + G +++AR
Sbjct: 161 FDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEAR 220

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172
            +FD + ++D F+WTAMIS + R  +  EAL L+  M+  E    ++  +  V++A + +
Sbjct: 221 KVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRG-EGWPVDEAVMVCVVAACARL 279

Query: 173 QCLRLGKEIHGYIMRTG---------------------------FDS----DEVVWSALS 201
           +  R G+  HG   R G                           FDS    D+  W+++ 
Sbjct: 280 EVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMI 339

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
             Y K GS+ +A+++F  M D+D VSWT MI    Q  +  E   +F+ +   GI+P+  
Sbjct: 340 AGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEV 399

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T   V++AC + ++ E GK +H Y+    Y       ++L+ MY KCG +E++ +VF+ M
Sbjct: 400 TLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTM 459

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKG 380
                  W ++I G A NG+  K+L+ F  +  S T  P+ I F GVL+AC HAGLV++G
Sbjct: 460 EERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEG 519

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
             +F  ++ K+ +     HY C+VDLL R+G   EAE++I  MPM PD   W +LLG C 
Sbjct: 520 QHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCW 579

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            HG+ ++ +R    L  ++P +   +  ++NIYAS
Sbjct: 580 KHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYAS 614



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 173/437 (39%), Gaps = 102/437 (23%)

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           + FS   ++     +  P   L LY  M    ++  + +T + + +A +  + +  G+++
Sbjct: 70  NAFSCNMVLKAAREHGLPHLCLPLYASM----SAAPDCYTHTILAAACATRRAIEEGRQV 125

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H + +R GF  +  + +AL  MY  CG + +AR++FD     D VSW  ++  Y Q    
Sbjct: 126 HCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDV 185

Query: 242 EEGFALFSELIKSGI---------------------------RPNAFTFAGVLN------ 268
           ++   +F+ + + G                            R + FT+  +++      
Sbjct: 186 DQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNG 245

Query: 269 -----------------------------ACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
                                        ACA       G+  HG   R G        +
Sbjct: 246 KFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQN 305

Query: 300 ALVHMYS-------------------------------KCGNVENSKKVFNGMPRPDLVS 328
           AL+HMYS                               K G+V+++K++F  MP  D VS
Sbjct: 306 ALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVS 365

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT++I+G  QN    +AL  F  +   G +PD +  V V++ACT+   +++G      I+
Sbjct: 366 WTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIR 425

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           E H  T T      ++D+  + G    A +V   M  +     W +++ G  ++G   L 
Sbjct: 426 E-HQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTP-CWNAVIVGLAMNG---LV 480

Query: 449 KRAAEALFEIEPENPAT 465
            ++ +   E+E  + AT
Sbjct: 481 MKSLDMFSEMESSSTAT 497



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 45/251 (17%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL I + +      P      S+I  C    +LE+GK +H +++   +   V +   L+
Sbjct: 381 EALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLI 440

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY KCG +  A  +FD M+ER    +N +I G    G +                    
Sbjct: 441 DMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLV-------------------- 480

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI-----HG 183
                      +++LD++  M++   +  N+ T + VLSA      +  G+       H 
Sbjct: 481 -----------MKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHK 529

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRRE 242
           Y +          +  + D+ G+ G + EA  + + M +  DV +W A++G  ++ G  E
Sbjct: 530 YHIIPNIRH----YGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNE 585

Query: 243 EGFALFSELIK 253
            G  +  +L+ 
Sbjct: 586 VGERVGRKLVN 596


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 256/459 (55%), Gaps = 8/459 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y S+++ C +    + G  VH  ++ S  K  +F+ N L+ MY + G +  A+ L
Sbjct: 191 PDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMYGRFGKLEVAREL 250

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQP 139
           FD M  RD  S+NTMIS +   G  ++A  LF  M +    R+   W  +  G +     
Sbjct: 251 FDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNF 310

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             AL L+  M+      S    +   L+A S I  ++LGKEIHG+ +RT FD  + V + 
Sbjct: 311 KGALKLFSQMRAVIQLDSVAMVVG--LNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNT 368

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY +C  +N A  +F K+ ++ +++W AM+  +    R EE   L  E+++ G+ PN
Sbjct: 369 LITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPN 428

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGNVENSKKV 317
             T A +L  CA  A  + GK+ H YM +    +  Y    ++LV MYS+ G V  ++KV
Sbjct: 429 YVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKV 488

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+ + R D V++TS+I GY  +G  + AL+ F  + +   +PDH+  V VL AC+H+GLV
Sbjct: 489 FDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLV 548

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +G   F  + E +G+    +HY+C+VDL  R+G   +A++VI+ M  KP   +WA+L+G
Sbjct: 549 AQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIG 608

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            C+IHGN  + + AA  L E++P++   Y+ +AN+YA+A
Sbjct: 609 ACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAA 647



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 211/478 (44%), Gaps = 74/478 (15%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L+  C   ++L +GK++H+H+ S G      + + L++ YA    ++DAQ + +      
Sbjct: 98  LLLGCTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAE------ 151

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
            CS                  N FD +       W  +IS YV+     +A+ +YR M +
Sbjct: 152 -CS------------------NSFDPL------HWNMVISLYVKNCLFEDAISVYRRMLS 186

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            +  + + +T  SVL A   +     G  +H  I  +       V +AL  MYG+ G + 
Sbjct: 187 -KGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMYGRFGKLE 245

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV----- 266
            AR++FD M  RD VSW  MI  Y   G  +E F LF  + ++GI  N   +  +     
Sbjct: 246 VARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCL 305

Query: 267 -----------------------------LNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
                                        LNAC+   A +LGK++HG+  R  +D +   
Sbjct: 306 HTGNFKGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNV 365

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            + L+ MYS+C ++ ++  +F  +    L++W ++++G+A     ++       +L+ G 
Sbjct: 366 KNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGV 425

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYF-HSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
           +P+++    +L  C     +  G ++  + +K +         +  +V++ +RSG+  EA
Sbjct: 426 EPNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEA 485

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR--AAEALFEIEPENPATYVTMANI 472
             V   +  K D+  + S++ G  + G+ + A +  A      I+P+    +VTM  +
Sbjct: 486 RKVFDSLSRK-DEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPD----HVTMVAV 538



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 126/263 (47%), Gaps = 2/263 (0%)

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKF--TLSSVLSAVSAIQCLRLGKEIHGYI 185
           A +  ++ YN    A   +  +Q+   S  +     +  +L   + ++ L  GK+IH +I
Sbjct: 59  ASLKDFITYNHLSNAFKTFIHIQHHHASSFDIIFQPIKHLLLGCTNLKSLSQGKQIHAHI 118

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +  G   + ++ S L + Y     + +A+ + +     D + W  +I  Y +    E+  
Sbjct: 119 ISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVKNCLFEDAI 178

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           +++  ++  G+ P+ +T+  VL AC +    + G  VH  +         F  +ALV MY
Sbjct: 179 SVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMY 238

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            + G +E ++++F+ MP  D VSW ++I+ YA  G+ D+A   F  + ++G + + I++ 
Sbjct: 239 GRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWN 298

Query: 366 GVLTACTHAGLVDKGLQYFHSIK 388
            +   C H G     L+ F  ++
Sbjct: 299 TIAGGCLHTGNFKGALKLFSQMR 321


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 268/470 (57%), Gaps = 6/470 (1%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ++ EA  I + +       ++S++    QN    E  + +  ++ +G KP +     ++ 
Sbjct: 368 KMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIA 427

Query: 70  MYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
             A+ GN  +   +         + D+   N+++  + K  S++    +FD+MP +D  S
Sbjct: 428 ASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 487

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WT +I+G+ +      AL+L+R +Q  E    +   +SS+L A S ++ +   KEIH YI
Sbjct: 488 WTTIIAGHAQNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKLISSVKEIHSYI 546

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +R G  SD V+ + + D+YG+CG+++ A ++F+ +  +DVVSWT+MI  Y   G   E  
Sbjct: 547 IRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEAL 605

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF  + ++G+ P++ +   +L+A A  +A + GK++HG++ R G+      AS LV MY
Sbjct: 606 ELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMY 665

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           ++CG +E S+ VFN +   DLV WTS+I  Y  +G    A++ F  +      PDHI FV
Sbjct: 666 ARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFV 725

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VL AC+H+GL+++G ++  S+K ++ L    +HY C+VDLL R+    EA   +  M +
Sbjct: 726 AVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEV 785

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +P   +W +LLG C+IH N +L + AA+ L E++PENP  YV ++N+YA+
Sbjct: 786 EPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAA 835



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/474 (30%), Positives = 235/474 (49%), Gaps = 46/474 (9%)

Query: 5   LCNQRRLKEALQILHQI-SHPSPS------IYSSLIQFCRQNRALEEGKKVHSHL-KSSG 56
           +C +  + EA Q L  + ++ SPS       YSS+++ C   +AL EG++VH+H+  S+ 
Sbjct: 86  ICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNA 145

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
               VF+S  L+ MY KCG + DA+                                LFD
Sbjct: 146 LFNSVFLSTRLVFMYGKCGCLVDAE-------------------------------KLFD 174

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
            MP +  F+W AMI  YV   +P+ +L+LYR M+       +  T   +L A   ++  R
Sbjct: 175 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR-VSGIPLDACTFPCILKACGLLKDRR 233

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRY 235
            G E+HG  ++ G+ S   V +++  MY KC  +N ARQ+FD+M ++ DVVSW +MI  Y
Sbjct: 234 CGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 293

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
              G+  E   LF E+ K+ + PN +TF   L AC D +  + G  +H  + +  Y    
Sbjct: 294 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV 353

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F A+AL+ MY++ G +  +  +F  M   D +SW S+++G+ QNG+  +AL+++  +  +
Sbjct: 354 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 413

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD +  + ++ A   +G    G+Q  H+   K+GL         +VD+ A+      
Sbjct: 414 GQKPDLVAVISIIAASARSGNTLNGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKY 472

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
            + +  KMP K D   W +++ G   H       RA E   E++ E     V M
Sbjct: 473 MDCIFDKMPDK-DVVSWTTIIAG---HAQNGSHSRALELFREVQLEGIDLDVMM 522



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 233/471 (49%), Gaps = 46/471 (9%)

Query: 13  EALQILHQISHPS--PSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL++  ++   S  P+ Y+  + +Q C  +  +++G  +H+ +  S +   VF++N L+
Sbjct: 301 EALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 360

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MYA+ G + +A  +F  M + D  S+N+M+SGF + G   +A   + EM  RD      
Sbjct: 361 AMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM--RD------ 412

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
             +G     +P    DL  ++     S  +  TL+              G +IH Y M+ 
Sbjct: 413 --AG----QKP----DLVAVISIIAASARSGNTLN--------------GMQIHAYAMKN 448

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G DSD  V ++L DMY K  S+     IFDKM D+DVVSWT +I  + Q G       LF
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            E+   GI  +    + +L AC+        K++H Y+ R G        + +V +Y +C
Sbjct: 509 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVL-QNGIVDVYGEC 567

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GNV+ + ++F  +   D+VSWTS+I+ Y  NG+ ++ALE F L+ ++G +PD I  V +L
Sbjct: 568 GNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSIL 627

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +A      + KG +  H    + G        + +VD+ AR G   ++ +V + +  K D
Sbjct: 628 SAAASLSALKKGKE-IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK-D 685

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALF---EIEPENPATYVTMANIYASA 476
             LW S++    +HG      RAA  LF   E E   P     +A +YA +
Sbjct: 686 LVLWTSMINAYGMHG----CGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 245/430 (56%), Gaps = 26/430 (6%)

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           +A+ G I +A+ LFD M  ++V S+N MI+ + +   +++A  LF E P +D  SWT MI
Sbjct: 245 FARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMI 304

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTL-------------SSVLSAVSAIQCLRL 177
           +GYVR  +  EA ++Y  M      V+ K  L             S V S ++    +  
Sbjct: 305 NGYVRVGKLDEAREVYNQMP--YKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICW 362

Query: 178 GKEIHGY-----------IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
              I GY           + R     + V W+ +   Y + G ++ A +IF+ M  R+V+
Sbjct: 363 NSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVI 422

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SW ++I  + Q G   +       + + G +P+  TFA  L++CA+ AA ++GKQ+H  +
Sbjct: 423 SWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELI 482

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            + GY    F ++AL+ MY+KCG V++++KVF  +   DL+SW SLI+GYA NG  ++A 
Sbjct: 483 LKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAF 542

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             FE +   GT PD + F+G+L+AC+HAGL ++G+  F  + E   +   A+HY+C+VDL
Sbjct: 543 WAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDL 602

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466
           L R GR  EA +++  M +K +  LW SLL  CR+H N++L K AA  L E+EP N + Y
Sbjct: 603 LGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNY 662

Query: 467 VTMANIYASA 476
           +T++N++A A
Sbjct: 663 ITLSNMHAEA 672



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 209/439 (47%), Gaps = 72/439 (16%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           ++E K+V S++            N ++ ++AK G +SDA+ LFD+M +R++ S+NTMI+G
Sbjct: 33  IDEAKRVFSNVIHKNHAT----YNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAG 88

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           +     +E+A  LFD M +RDNFSW  MI+ Y R     +A +L+ +       V +K  
Sbjct: 89  YLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFEL-------VPDKL- 140

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
                                          D   W+A+   Y K G  ++A ++F+KM 
Sbjct: 141 -------------------------------DTACWNAMIAGYAKKGRFDDAEKVFEKMP 169

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            +D+VS+ +M+  Y Q G+       F  + +  +       AG +N C   +A EL ++
Sbjct: 170 VKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEK 229

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +         DP + +   ++  +++ G +  ++K+F+ MP  ++VSW ++IA Y Q+  
Sbjct: 230 IP--------DPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQ 281

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            D+A++ F    K     D + +  ++      G +D+  + ++ +  K     TA    
Sbjct: 282 IDEAVKLF----KETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTA---- 333

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-CRIHGNLDLAKRAAEA--LFEI 458
            ++  L ++GR  EA  V S++  K D   W S++ G C+       + R +EA  LF  
Sbjct: 334 -LMSGLIQNGRIDEASQVFSQLN-KRDAICWNSMIAGYCQ-------SGRMSEALNLFRQ 384

Query: 459 EP-ENPATYVTMANIYASA 476
            P +N  ++ TM + YA A
Sbjct: 385 MPVKNAVSWNTMISGYAQA 403



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 171/328 (52%), Gaps = 7/328 (2%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           +L EA ++ +Q+ +   +  ++L+    QN  ++E  +V S L     K      N ++ 
Sbjct: 312 KLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLN----KRDAICWNSMIA 367

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y + G +S+A  LF +M  ++  S+NTMISG+ + G +++A  +F+ M  R+  SW ++
Sbjct: 368 GYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSL 427

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+G+++    ++AL    +M   E    ++ T +  LS+ + +  L++GK++H  I+++G
Sbjct: 428 ITGFLQNGLYLDALKSLVLMGQ-EGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSG 486

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           + +D  V +AL  MY KCG +  A ++F  +   D++SW ++I  Y   G   E F  F 
Sbjct: 487 YINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFE 546

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKC 308
           ++   G  P+  TF G+L+AC+       G  +   M      +P +   S LV +  + 
Sbjct: 547 QMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRM 606

Query: 309 GNVENSKKVFNGMP-RPDLVSWTSLIAG 335
           G +E +  +  GM  + +   W SL+A 
Sbjct: 607 GRLEEAFNIVRGMKVKANAGLWGSLLAA 634


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/484 (33%), Positives = 260/484 (53%), Gaps = 68/484 (14%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S+ S L    RQ+  L   KK+H+ +  +G      I N LL+ Y KC            
Sbjct: 6   SLQSQLCSAARQSPLL--AKKLHAQIIKAGLNQHEPIPNTLLNAYGKC------------ 51

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                              G ++ A  LFD +P+RD  +W ++++     N+P  AL + 
Sbjct: 52  -------------------GLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSIS 92

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRL--GKEIHGYIMRTGFDSDEVVWSALSDMY 204
           R + +      + F  +S++ A + +  L +  GK++H     + F  D+VV S+L DMY
Sbjct: 93  RSLLS-TGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMY 151

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF---------------S 249
            K G  +  R +FD +   + +SWT MI  Y + GR+ E F LF               S
Sbjct: 152 AKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALIS 211

Query: 250 ELIKSGIRPNAF-----------------TFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
            L++SG   +AF                   + V+ ACA+ A  ELGKQ+HG +  +GY+
Sbjct: 212 GLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYE 271

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              F ++AL+ MY+KC ++  +K +F  M R D+VSWTS+I G AQ+G  ++AL  ++ +
Sbjct: 272 SCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEM 331

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           + +G +P+ + FVG++ AC+HAGLV KG   F ++ E HG++ +  HY C++DL +RSG 
Sbjct: 332 VLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGH 391

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
             EAE++I  MP+ PD+  WA+LL  C+ HGN  +A R A+ L  ++PE+P++Y+ ++NI
Sbjct: 392 LDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNI 451

Query: 473 YASA 476
           YA A
Sbjct: 452 YAGA 455



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 194/350 (55%), Gaps = 4/350 (1%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRAL--EEGKKVHSHLKSSGFKPGVFISN 65
            R L  +  +L    HP   +++SL++ C     L  ++GK+VH+    S F     + +
Sbjct: 86  HRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKS 145

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMYAK G     + +FD +   +  S+ TMISG+ + G   +A  LF + P R+ F+
Sbjct: 146 SLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFA 205

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WTA+ISG V+    ++A  L+  M++   SV++   LSSV+ A + +    LGK++HG +
Sbjct: 206 WTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVV 265

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +  G++S   + +AL DMY KC  +  A+ IF +M  +DVVSWT++I    Q G+ EE  
Sbjct: 266 ITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEAL 325

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHM 304
           AL+ E++ +G++PN  TF G+++AC+       G+ +   M    G  P     + L+ +
Sbjct: 326 ALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDL 385

Query: 305 YSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
           +S+ G+++ ++ +   MP  PD  +W +L++   ++G    A+   + LL
Sbjct: 386 FSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLL 435


>gi|125605681|gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
          Length = 701

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 260/468 (55%), Gaps = 37/468 (7%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R ++   ++ HQ   P+   Y+S+  F   N ++E G ++HS     GF  G+ + + L 
Sbjct: 246 RSVQLLRRMFHQGLRPNDKCYASV--FSSVN-SIEFGGQLHSSAIKEGFIHGILVGSALS 302

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY++C N+ D              SY                  +F+EM +RD  SWTA
Sbjct: 303 TMYSRCDNVQD--------------SYK-----------------VFEEMQERDGVSWTA 331

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           M++G+  +   +EA   +R M   +    +  +L+++LSA +  +CL  GKE+HG+ +R 
Sbjct: 332 MVAGFATHGHSVEAFLTFRNMI-LDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRV 390

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
            +     +      MY KC  +  AR+IFD    +D V W++MI  Y   G  EE  +LF
Sbjct: 391 -YGETTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLF 449

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             ++ + IR +++  + +L+ CAD A     K +HGY  + G       +S+LV +YS+ 
Sbjct: 450 QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRS 509

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GN+++S+KVF+ +  PDLV+WT++I GYAQ+G    AL  F+L+++ G +PD +V V VL
Sbjct: 510 GNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVL 569

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+  GLV++G  YF+S++  +G+     HY C+VDLL RSGR  EA+  +  MPMKPD
Sbjct: 570 SACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPD 629

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W++LL  CR+H +  L +     + E   ++  ++ T++NI A++
Sbjct: 630 LMVWSTLLAACRVHDDTVLGRFVENKIREGNYDS-GSFATLSNILANS 676



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 237/525 (45%), Gaps = 84/525 (16%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+   YS  +  C     L  G+ VH  +     +  VF+   L++MYAKCG++  A  
Sbjct: 58  EPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMR 117

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQ 138
            F  M  R+V S+ T I+GF +      A  L  EM +     + ++ T+++    + + 
Sbjct: 118 EFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSM 177

Query: 139 PIEALDLYRMMQNFE-------------------------------NSVSNKFTLSSVLS 167
             EA  ++ M+   E                                +VSN+   S+ +S
Sbjct: 178 VREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFIS 237

Query: 168 AVS------AIQCLR-------------------------LGKEIHGYIMRTGFDSDEVV 196
            VS      ++Q LR                          G ++H   ++ GF    +V
Sbjct: 238 GVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILV 297

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            SALS MY +C ++ ++ ++F++M +RD VSWTAM+  +   G   E F  F  +I  G 
Sbjct: 298 GSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGF 357

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  +   +L+AC        GK+VHG+  R+ Y   +F     + MYSKC  V+ +++
Sbjct: 358 KPDHVSLTAILSACNRPECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARR 416

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F+  PR D V W+S+I+GYA NG  ++A+  F+L++ +  + D  +   +L+ C     
Sbjct: 417 IFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCA---- 472

Query: 377 VDKGLQYF----HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
            D    ++    H    K G+       + +V + +RSG   ++  V  ++ + PD   W
Sbjct: 473 -DIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISV-PDLVAW 530

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPE---NPATYVTMANIYA 474
            +++ G   HG    + + A A+F++  +    P T V ++ + A
Sbjct: 531 TTIIDGYAQHG----SSQNALAMFDLMVQLGVRPDTVVLVSVLSA 571



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 8/348 (2%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           M+    K G L  A  +F +        W A +SG VR  +   A++++R M  + +   
Sbjct: 1   MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMV-WGSCEP 59

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N FT S  LSA +A + L +G+ +HG ++R   + D  V ++L +MY KCG +  A + F
Sbjct: 60  NSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREF 119

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            +M  R+VVSWT  I  + Q+        L  E++++G+  N +T   +L ACA  +   
Sbjct: 120 WRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVR 179

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS-WTSLIAGY 336
              Q+HG + +           AL+  Y+  G +E S+KVF         S W++ I+G 
Sbjct: 180 EASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGV 239

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           + + +  ++++    +   G +P+   +  V ++      ++ G Q  HS   K G  + 
Sbjct: 240 SNHSLL-RSVQLLRRMFHQGLRPNDKCYASVFSSVNS---IEFGGQ-LHSSAIKEGFIHG 294

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               + +  + +R     ++  V  +M  + D   W +++ G   HG+
Sbjct: 295 ILVGSALSTMYSRCDNVQDSYKVFEEMQER-DGVSWTAMVAGFATHGH 341



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 17/254 (6%)

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           + D+  K G + +A ++F        V W A +    + G       +F +++     PN
Sbjct: 1   MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPN 60

Query: 260 AFTFAGVLNACADHAAEEL--GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           +FT++G L+ACA  A EEL  G+ VHG + R   +   F  ++LV+MY+KCG++  + + 
Sbjct: 61  SFTYSGALSACA--AGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMRE 118

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F  MP  ++VSWT+ IAG+ Q+  P  A+     ++++G   +      +L AC    +V
Sbjct: 119 FWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMV 178

Query: 378 DKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARS-----GRFHEAEDVISKMPMKPDKFL 431
            +  Q        HG+    + Y  C+V     S     G    +E V  +     ++ +
Sbjct: 179 REASQI-------HGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSI 231

Query: 432 WASLLGGCRIHGNL 445
           W++ + G   H  L
Sbjct: 232 WSAFISGVSNHSLL 245


>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 260/518 (50%), Gaps = 75/518 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLDMYAKCGNISDAQTLFDE- 86
           Y S +Q C        G  +H+     GF P  +F  N +L+ Y KCG +S    LFDE 
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLK-GFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEM 276

Query: 87  ----------------------------------------------------MQERDVCS 94
                                                               + +R +CS
Sbjct: 277 PERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICS 336

Query: 95  Y------------------NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           Y                  N  ++   +   L +A  +F+    +D  SW AM++GY++ 
Sbjct: 337 YQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQL 396

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
               E    +R M N E+   + FT +S+L+ ++A+   RLG ++HG ++++G+ +D  V
Sbjct: 397 -AYFELPKFWRRM-NLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICV 454

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L DMY K   + +  + FD+M   DV SWT M     Q G   +   +  E+   G+
Sbjct: 455 GNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGV 514

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           R N FT A  LN+CA+ A+ E GK+ HG   ++G D      +AL+ MY+KCG + ++  
Sbjct: 515 RLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANV 574

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF  M    +VSWT++I G+A NG   +AL+ F+ + K   +P+HI F+ VL AC+  G 
Sbjct: 575 VFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGF 634

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +D+  +YF S+   HG+  + DHY C+V+LL R+G   EAED+I +MP +P   +W +LL
Sbjct: 635 IDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLL 694

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           G C +HG+++  KRAAE    ++  +P+TY+ ++N++A
Sbjct: 695 GACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNMFA 732



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 19/255 (7%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +AL++++++ +    +     ++ +  C    ++EEGKK H      G    V + N LL
Sbjct: 501 KALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALL 560

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNF 124
           DMYAKCG ++ A  +F  M ER V S+ TMI GF   G  ++A  +FDEM     + ++ 
Sbjct: 561 DMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHI 620

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           ++  +++   +     EA   +  M        ++     +++ +    C+   KE    
Sbjct: 621 TFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCI---KEAEDL 677

Query: 185 IMRTGFDSDEVVWSALSDMYGKC---GSINEARQIFDKM--VDRDVVSWTAMIGRYFQEG 239
           I++  F    +VW  L    G C   G I   ++  +    +DR+  S   ++   F  G
Sbjct: 678 ILQMPFQPGSLVWQTL---LGACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNMFAGG 734

Query: 240 RREEGFALFSELIKS 254
              +   +  EL+++
Sbjct: 735 DNWDSVGILRELMET 749


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 228/381 (59%), Gaps = 1/381 (0%)

Query: 96   NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            N ++  ++   +L+ A  LFD M  RD+ SW+ M+ G+ +    +     +R +      
Sbjct: 774  NKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGAR 833

Query: 156  VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
              N +TL  V+ A   ++ L++G+ IH  + + G D D  V +AL DMYGKC  I +AR 
Sbjct: 834  PDN-YTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARF 892

Query: 216  IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            +FDKM +RD+V+WT MIG Y + G   E   LF ++ + G+ P+      V+ ACA   A
Sbjct: 893  LFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 952

Query: 276  EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
                + +  Y+ R  +       +A++ M++KCG VE+++++F+ M   +++SW+++IA 
Sbjct: 953  MHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAA 1012

Query: 336  YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
            Y  +G   KAL+ F ++L+SG  P+ I  V +L AC+HAGLV++GL++F  + E + +  
Sbjct: 1013 YGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRX 1072

Query: 396  TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
               HY C+VDLL R+GR  EA  +I  M  + D+ LW + LG CR H ++ LA++AA +L
Sbjct: 1073 DVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSL 1132

Query: 456  FEIEPENPATYVTMANIYASA 476
             E++P+NP  Y+ ++NIYA+A
Sbjct: 1133 LELQPQNPGHYILLSNIYANA 1153



 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 35/459 (7%)

Query: 18  LHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
            H +   +P  Y S +  CR    L + ++VH+     G    + ++N L+  Y      
Sbjct: 54  FHFLQRLNPKFYISALVNCRN---LTQVRQVHAQASVHGMLENIVVANKLIYFY------ 104

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
                           SY           +L+ A  LFD M  RD+ SW+ M+ G+ +  
Sbjct: 105 ----------------SYYR---------ALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 139

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
             I     +R +        N +TL  V+ A   ++ L++G+ IH  + + G D D  V 
Sbjct: 140 DYINCFGTFRELIRCGARPDN-YTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 198

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           +AL DMY KC  I +AR +FDKM +RD+V+WT MIG Y + G+  E   LF ++ + G+ 
Sbjct: 199 AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 258

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+      V+ ACA   A    + +  Y+ R  +       +A++ MY+KCG VE+++++
Sbjct: 259 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 318

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+ M   +++SW+++IA Y  +G   KAL+ F ++L SG  PD I    +L AC+HAGLV
Sbjct: 319 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLV 378

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           ++GL++F S+ E + +     HY C+VDLL R+GR  EA  +I  M ++ D+ LW + LG
Sbjct: 379 EEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLG 438

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            CR H ++ LA++AA +L E++ +NP  YV ++NIYA+A
Sbjct: 439 ACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANA 477



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 41/305 (13%)

Query: 22   SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
            + P       +I+ CR  + L+ G+ +H  +   G     F+   L+DMY KC  I DA+
Sbjct: 832  ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDAR 891

Query: 82   TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
             LFD+M ERD+ ++  MI G+ + G+  ++  LFD+M +                     
Sbjct: 892  FLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE--------------------- 930

Query: 142  ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
                       E  V +K  + +V+ A + +  +   + I  YI R  F  D ++ +A+ 
Sbjct: 931  -----------EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMI 979

Query: 202  DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
            DM+ KCG +  AR+IFD+M +++V+SW+AMI  Y   G+  +   LF  +++SGI PN  
Sbjct: 980  DMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKI 1039

Query: 262  TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA-----SALVHMYSKCGNVENSKK 316
            T   +L AC+     E G +    M    ++ YS        + +V +  + G ++ + K
Sbjct: 1040 TLVSLLYACSHAGLVEEGLRFFSXM----WEDYSVRXDVKHYTCVVDLLGRAGRLDEALK 1095

Query: 317  VFNGM 321
            +   M
Sbjct: 1096 LIXSM 1100



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 134/266 (50%), Gaps = 2/266 (0%)

Query: 179  KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
            +++H      G   + +V + L   Y    ++++A  +FD M  RD VSW+ M+G + + 
Sbjct: 755  RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 239  GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            G     F  F ELI+ G RP+ +T   V+ AC D    ++G+ +H  + + G D   F  
Sbjct: 815  GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 874

Query: 299  SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            +ALV MY KC  +E+++ +F+ M   DLV+WT +I GYA+ G  +++L  F+ + + G  
Sbjct: 875  AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934

Query: 359  PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            PD +  V V+ AC   G + K       I+ K            ++D+ A+ G    A +
Sbjct: 935  PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK-FQLDVILGTAMIDMHAKCGCVESARE 993

Query: 419  VISKMPMKPDKFLWASLLGGCRIHGN 444
            +  +M  K +   W++++     HG 
Sbjct: 994  IFDRMEEK-NVISWSAMIAAYGYHGQ 1018


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 237/413 (57%), Gaps = 9/413 (2%)

Query: 70  MYAKCGNISDAQT-------LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           ++  C N+ + +        +F    + D  + N+M++ + + G    AR +FDE+ ++D
Sbjct: 123 VFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKD 182

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             SW +++SGY +     EA++++  ++       ++ +L SVL A   +  L LG+ + 
Sbjct: 183 LVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVE 242

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           G+++  G   +  + SAL  MY KCG +  +R+IFD M  RD ++W A I  Y Q G  +
Sbjct: 243 GFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMAD 302

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E  +LF  + ++G+ PN  T   VL+ACA   A +LGKQ+  Y T  G     F A+AL+
Sbjct: 303 EAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALI 362

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQPD 360
            MY+KCG++E++++VFN MPR +  SW ++I+  A +G   +AL  FE +   G   +P+
Sbjct: 363 DMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPN 422

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I FV +L+AC HAGLVD+G + F  +    GL    +HY+C+VDLL+R+G  +EA DVI
Sbjct: 423 DITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVI 482

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            KMP KPD     +L   C+   N+D+ +R  + L E++P N   Y+  + IY
Sbjct: 483 EKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIY 535



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 203/411 (49%), Gaps = 13/411 (3%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM-PQRDNFS 125
           LL +  +C +    Q +  +     +   N ++S          +  +F  + P  ++++
Sbjct: 24  LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA 83

Query: 126 WTAMISGYVR--YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           +  M+       ++ P+  L LY  M+   N   N FT   V  A + ++ +R+ +  H 
Sbjct: 84  FNIMLRATTTTWHDYPL-TLHLYHQMKTL-NISPNNFTFPFVFLACANLEEIRMARLAHC 141

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            + + G D+D    +++  MY +CG    AR++FD++ ++D+VSW +++  Y + G   E
Sbjct: 142 EVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFARE 201

Query: 244 GFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
              +F  L  +SG  P+  +   VL AC +    ELG+ V G++   G    S+  SAL+
Sbjct: 202 AVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALI 261

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MYSKCG + +S+++F+GMP  D ++W + I+ YAQNGM D+A+  F  + ++G  P+ +
Sbjct: 262 SMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKV 321

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               VL+AC   G +D G Q         GL +       ++D+ A+ G    A+ V + 
Sbjct: 322 TLTAVLSACASIGALDLGKQ-MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFND 380

Query: 423 MPMKPDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYVTM 469
           MP K D   W +++     HG     L L +R ++      P N  T+V++
Sbjct: 381 MPRKNDAS-WNAMISALASHGKAKEALSLFERMSDEGGSARP-NDITFVSL 429



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 163/353 (46%), Gaps = 43/353 (12%)

Query: 12  KEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +EA+++  ++       P      S++  C +   LE G+ V   +   G K   +I + 
Sbjct: 200 REAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSA 259

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MY+KCG +  ++ +FD M  RD  ++N  IS + + G  ++A +LF  M        
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK------- 312

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                     EN V  NK TL++VLSA ++I  L LGK++  Y 
Sbjct: 313 --------------------------ENGVDPNKVTLTAVLSACASIGALDLGKQMDEYA 346

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              G   D  V +AL DMY KCGS+  A+++F+ M  ++  SW AMI      G+ +E  
Sbjct: 347 THRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEAL 406

Query: 246 ALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALV 302
           +LF  +   G   RPN  TF  +L+AC      + G ++   M T  G  P     S +V
Sbjct: 407 SLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMV 466

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            + S+ G++  +  V   MP +PD V+  +L +   +    D      ++LL+
Sbjct: 467 DLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLE 519


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 244/411 (59%), Gaps = 29/411 (7%)

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G I DA+ L+D M  +DV +   MI G  + G +++AR +FDEM +R+  +WT MI+GY 
Sbjct: 155 GRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYG 214

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           +  +   A  L+ +M         + + +S+L          LG  + G I     D++E
Sbjct: 215 QNKRVDVARKLFEVMPE-----KTEVSWTSML----------LGYTLSGRIE----DAEE 255

Query: 195 ----------VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
                     +  +A+    G+ G I +AR++FD+M DRD  +W  MI  Y ++G   E 
Sbjct: 256 FFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEA 315

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF+++ + G+RP+  +   +L+ CA  A+ + G+QVH ++ R  +D   + AS L+ M
Sbjct: 316 LELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTM 375

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCG +  +K VF+  P  D++ W S+I+GYA +G+ ++AL+ F  +  SGT P+ +  
Sbjct: 376 YVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTL 435

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           + +LTAC++ G +++GL+ F S++ K  +T T +HY+C VD+L R+G+  +A ++I+ M 
Sbjct: 436 IAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMT 495

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +KPD  +W +LLG C+ H  LDLA+ AA+ LFEIEPEN   Y+ +++I AS
Sbjct: 496 IKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINAS 546



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 169/334 (50%), Gaps = 9/334 (2%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LC + R+ EA +I  ++   +   ++++I    QN+ ++  +K+   +     K  V  +
Sbjct: 182 LCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPE---KTEVSWT 238

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           + LL  Y   G I DA+  F+ M  + V + N MI    + G + +AR +FD+M  RDN 
Sbjct: 239 SMLLG-YTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNA 297

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHG 183
           +W  MI  Y R    +EAL+L+  MQ     V   F +L S+LS  + +  L+ G+++H 
Sbjct: 298 TWRGMIKAYERKGFELEALELFAQMQR--QGVRPSFPSLISILSVCATLASLQYGRQVHA 355

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           +++R  FD D  V S L  MY KCG + +A+ +FD+   +D++ W ++I  Y   G  EE
Sbjct: 356 HLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEE 415

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALV 302
              +F E+  SG  PN  T   +L AC+     E G ++   M ++    P     S  V
Sbjct: 416 ALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTV 475

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            M  + G V+ + ++ N M  +PD   W +L+  
Sbjct: 476 DMLGRAGKVDKAMELINSMTIKPDATVWGALLGA 509



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 208/441 (47%), Gaps = 38/441 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNR--ALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +K    ILH+    S  + +S  +  R +R   + E +K    L+           N ++
Sbjct: 1   MKSLKLILHRAYSTSTGVNNSF-EISRLSRIGQINEARKFFDSLRYKAIGSW----NSIV 55

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
             Y   G   +A+ +FDEM ER++ S+N ++SG+ K   +E+ARN+F+ MP+R+  SWTA
Sbjct: 56  SGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTA 115

Query: 129 MISGYVRYNQPIEA-LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           M+ GYV+    +EA L  +RM +  E S +  F           I   R+      Y M 
Sbjct: 116 MVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFG--------GLIDGGRIDDARKLYDMM 167

Query: 188 TGFDSDEVVWSALSDMYGKC--GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
            G D    V ++ + + G C  G ++EAR+IFD+M +R+V++WT MI  Y Q  R +   
Sbjct: 168 PGKD----VVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVAR 223

Query: 246 ALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
            LF  +  K+ +   +      L+   + A E        +   +   P   A +A++  
Sbjct: 224 KLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE--------FFEVMPMKPV-IACNAMIVA 274

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
             + G +  +++VF+ M   D  +W  +I  Y + G   +ALE F  + + G +P     
Sbjct: 275 LGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSL 334

Query: 365 VGVLTACTHAGLVDKGLQ-YFHSIK-EKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
           + +L+ C     +  G Q + H ++ +  G  Y A   + ++ +  + G   +A+ V  +
Sbjct: 335 ISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVA---SVLMTMYVKCGELVKAKLVFDR 391

Query: 423 MPMKPDKFLWASLLGGCRIHG 443
            P K D  +W S++ G   HG
Sbjct: 392 FPSK-DIIMWNSIISGYASHG 411


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 252/453 (55%), Gaps = 36/453 (7%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S S ++S+I+ C   + L   +++H  +   GF     I   L+  Y+KC  + DA  LF
Sbjct: 294 SESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLF 353

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
            E+     C  N +                          SWTAMISG+++ +   EA+D
Sbjct: 354 KEIG----CVGNVV--------------------------SWTAMISGFLQNDGKEEAVD 383

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           L+  M+  +    N+FT S +L+A+  I       E+H  +++T ++    V +AL D Y
Sbjct: 384 LFSEMKR-KGVRPNEFTYSVILTALPVIS----PSEVHAQVVKTNYERSSTVGTALLDAY 438

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            K G + EA ++F  + D+D+V+W+AM+  Y Q G  E    +F EL K GI+PN FTF+
Sbjct: 439 VKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFS 498

Query: 265 GVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            +LN CA  +A+   GKQ HG+  +   D     +SAL+ MY+K GN+E++++VF     
Sbjct: 499 SILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQRE 558

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            DLVSW S+I+GYAQ+G   KAL+ F+ + K   + D + F+GV  ACTHAGLV++G +Y
Sbjct: 559 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +     +  T +H +C+VDL +R+G+  +A  VI  MP      +W ++L  CR+H 
Sbjct: 619 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHK 678

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +L + AAE +  ++PE+ A YV ++N+YA +
Sbjct: 679 KTELGRLAAEKIIAMKPEDSAAYVLLSNMYAES 711



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 217/453 (47%), Gaps = 42/453 (9%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           SI+SS+++          G+++H      GF   V +   L+D Y K  N  D + +FDE
Sbjct: 94  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M+ER+V ++ T+ISG+        ARN  ++                       E L L+
Sbjct: 154 MKERNVVTWTTLISGY--------ARNSMND-----------------------EVLTLF 182

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             MQN E +  N FT ++ L  ++       G ++H  +++ G D    V ++L ++Y K
Sbjct: 183 MRMQN-EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLK 241

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG++ +AR +FDK   + VV+W +MI  Y   G   E   +F  +  + +R +  +FA V
Sbjct: 242 CGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASV 301

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPD 325
           +  CA+       +Q+H  + + G+       +AL+  YSKC  + ++ ++F  +    +
Sbjct: 302 IKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGN 361

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSWT++I+G+ QN   ++A++ F  + + G +P+   +  +LTA       +   Q   
Sbjct: 362 VVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVK 421

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           +  E+     TA     ++D   + G+  EA  V S +  K D   W+++L G    G  
Sbjct: 422 TNYERSSTVGTA-----LLDAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAGYAQTGET 475

Query: 446 DLAKRAAEALFE--IEPENPATYVTMANIYASA 476
           + A +    L +  I+P N  T+ ++ N+ A+ 
Sbjct: 476 EAAIKMFGELTKGGIKP-NEFTFSSILNVCAAT 507



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 178/376 (47%), Gaps = 47/376 (12%)

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA----LDLYRMMQNFENSV 156
           G      L  A NLFD+ P RD  S+ +++ G+ R  +  EA    L+++R+    + S+
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 157 SNKFTLSSVLSAVSAIQCLRL-GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
                 SSVL  VSA  C  L G+++H   ++ GF  D  V ++L D Y K  +  + R+
Sbjct: 96  -----FSSVLK-VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRK 149

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD+M +R+VV+WT +I  Y +    +E   LF  +   G +PN+FTFA  L   A+   
Sbjct: 150 VFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGV 209

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              G QVH  + + G D     +++L+++Y KCGNV  ++ +F+      +V+W S+I+G
Sbjct: 210 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 269

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT-----------HAGLVDKGLQYF 384
           YA NG+  +AL  F  +  +  +     F  V+  C            H  +V  G  + 
Sbjct: 270 YAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFD 329

Query: 385 HSIKEKHGLTYT---------------------ADHYACIVDLLARSGRFHEAEDVISKM 423
            +I+    + Y+                         A I   L   G+  EA D+ S+M
Sbjct: 330 QNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGK-EEAVDLFSEM 388

Query: 424 PMK---PDKFLWASLL 436
             K   P++F ++ +L
Sbjct: 389 KRKGVRPNEFTYSVIL 404



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 24  PSPSIYSSLIQFCR-QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P+   +SS++  C   N ++ +GK+ H     S     + +S+ LL MYAK GNI  A+ 
Sbjct: 492 PNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEE 551

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           +F   +E+D+ S+N+MISG+ + G   +A ++F EM +R
Sbjct: 552 VFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 590


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 232/432 (53%), Gaps = 41/432 (9%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           + VHSH+   G     F+ N L+D Y+K G  SDA+ +FDEM ERDV S+NT ++   + 
Sbjct: 148 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE 207

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G L   R LFDEMP++D  SW  ++ GY +  +   A +L++ M                
Sbjct: 208 GELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMP--------------- 252

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
                                    + + V WS +   Y K G +  AR IFDKM  +++
Sbjct: 253 -------------------------ERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 287

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V+WT M+    Q+G  +E   LF+++ ++ +  +      +L ACA+  +  LGK++H Y
Sbjct: 288 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 347

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG-MPRPDLVSWTSLIAGYAQNGMPDK 344
           + +      +   +AL+ M+ KCG V  +  VF+    + D VSW S+I G+A +G  DK
Sbjct: 348 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 407

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           ALE F  + + G  PD +  + VL+ACTH G VD+G ++F +++  +G+    +HY C++
Sbjct: 408 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 467

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           DLL R G   EA D+I  MP +P++ +W SLL  CR+H N++ A+ A   L +++P N  
Sbjct: 468 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 527

Query: 465 TYVTMANIYASA 476
            Y  ++NIYA A
Sbjct: 528 NYAVLSNIYAEA 539



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 6   CNQRRL-KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           C Q+ L  EA ++  Q+   S  +      S++  C ++ +L  GK++H +++       
Sbjct: 297 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 356

Query: 61  VFISNCLLDMYAKCGNISDAQTLFD-EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             + N L+DM+ KCG ++ A  +FD E  ++D  S+N++I GF   G  ++A  LF +M 
Sbjct: 357 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 416

Query: 120 QR 121
           Q+
Sbjct: 417 QQ 418


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 232/412 (56%), Gaps = 40/412 (9%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N LL    + GN+  A+ LFD M ER+V ++ TM++G  + GS+++AR LFD MP+R+  
Sbjct: 164 NILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVV 223

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW AMISGY R ++  EA DL+  M   + +  N                          
Sbjct: 224 SWNAMISGYARNHRIDEAHDLFMKMPTRDIASWN-------------------------- 257

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           IM TGF  D                +  A+ +FDKM  R+V++WT M+  Y Q  + E  
Sbjct: 258 IMITGFIQDR--------------DLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETA 303

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             +F+ ++  GIRPN  TF G ++AC++ A    G+QVH  + +  +   +F  S L+++
Sbjct: 304 LQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNL 363

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG +  ++KVF+     D++SW  +IA YA +G+  +A+  +E + + G +P+ + +
Sbjct: 364 YAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTY 423

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VG+L+AC+H+GLVD+GL+ F  + +   +    +HY C++DL +R+GR  +A+ +I  + 
Sbjct: 424 VGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLK 483

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++P   +W +LLGGC  HGN  +   AA  L E EP N  TY  + NIYASA
Sbjct: 484 VEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASA 535



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 168/372 (45%), Gaps = 35/372 (9%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N  ++     G +  AR LFD  P RD  SWTA+++ Y R     +A  L+       N 
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNV 98

Query: 156 VSNKFTLSS------VLSAVSAIQCLRLGKEIHGYIMRTGFDS----------------- 192
           V+    LS       V  A +  Q +     +    M   + S                 
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVR 158

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           D   W+ L     + G++++AR++FD+M +R+V++WT M+    + G  +E  ALF  + 
Sbjct: 159 DAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMP 218

Query: 253 KSGIRPNAFTFAGVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           +     N  ++  +++  A +H  +E         TR   D  S+  + ++  + +  ++
Sbjct: 219 ER----NVVSWNAMISGYARNHRIDEAHDLFMKMPTR---DIASW--NIMITGFIQDRDL 269

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           E ++ +F+ MPR ++++WT+++ GY Q+   + AL+ F  +L  G +P+ + F+G + AC
Sbjct: 270 ERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDAC 329

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           ++   + +G Q  H +  K    +     + +++L A+ G    A  V   +  + D   
Sbjct: 330 SNLAGLSEG-QQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFD-LSKEKDVIS 387

Query: 432 WASLLGGCRIHG 443
           W  ++     HG
Sbjct: 388 WNGMIAAYAHHG 399



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 131/268 (48%), Gaps = 22/268 (8%)

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G +++AR++FD+  DRDVVSWTA++  Y ++G   +  ALF    +   R N  T+  +
Sbjct: 48  AGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD---RPDARRNVVTWTAL 104

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+  A     +  + +   M       +    + ++  Y+  G V ++  +F+GMP  D 
Sbjct: 105 LSGYARAGRVDEAEALFQRMPERNVVSW----NTMLEAYTSAGRVRDAWTLFDGMPVRDA 160

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            SW  L+A   ++G  DKA + F+ +     + + + +  ++     +G VD+    F  
Sbjct: 161 GSWNILLAALVRSGNMDKARKLFDRM----PERNVMAWTTMVAGIARSGSVDEARALFDG 216

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + E++ +++ A     ++   AR+ R  EA D+  KMP + D   W  ++ G     + D
Sbjct: 217 MPERNVVSWNA-----MISGYARNHRIDEAHDLFMKMPTR-DIASWNIMITG--FIQDRD 268

Query: 447 LAKRAAEALFEIEP-ENPATYVTMANIY 473
           L +  A+ LF+  P  N  T+ TM N Y
Sbjct: 269 LER--AQDLFDKMPRRNVITWTTMMNGY 294



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           + ALQI + +      P+   +   +  C     L EG++VH  +  + F+   FI + L
Sbjct: 301 ETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTL 360

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           +++YAKCG I  A+ +FD  +E+DV S+N MI+ +   G   +A +L+++M ++
Sbjct: 361 MNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEK 414


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 271/453 (59%), Gaps = 8/453 (1%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S+L+  C +  A  +G+++H++    G +  + +SN ++  Y +CG+++    LF+ M  
Sbjct: 309 STLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPV 368

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RM 148
           RD+ ++  MI+ + + G ++ A ++F++MP++++ S+ A+++G+ + N+ ++AL+L+ RM
Sbjct: 369 RDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRM 428

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           +Q  E +    FTL+ V++A   +  L + ++IHG+I++ GF S+  + +AL DM  KCG
Sbjct: 429 VQ--EGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCG 486

Query: 209 SINEARQIFDKMVDR--DVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAG 265
            +++A ++F  +     + +  T+MI  Y + G  EE   LF      G +  +   F  
Sbjct: 487 RMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTS 546

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +L  C      E+GKQ+H    + G+       ++++ MYSKC N++++ K FN MP  D
Sbjct: 547 ILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHD 606

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA--CTHAGLVDKGLQY 383
           +VSW  LIAG   +   D+AL  +  + K+G +PD I FV +++A   T + L+D+    
Sbjct: 607 VVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRSL 666

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+K  H L  T++HYA +V +L   G   EAE++I+KMP  P+  +W +LL GCR+H 
Sbjct: 667 FLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELINKMPFDPEVSVWRALLDGCRLHA 726

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N  + KR A+ +  +EP +P+TYV ++N+YA++
Sbjct: 727 NTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAAS 759



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 237/504 (47%), Gaps = 74/504 (14%)

Query: 10  RLKEALQILHQ--ISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EA+Q+  +  IS   P+ YS  +++  C ++  LE G +VH+     G+   VF++N
Sbjct: 183 RETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVAN 242

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ +Y KCG                                L+ A +LFDEMPQRD  S
Sbjct: 243 ALIGLYGKCG-------------------------------CLDHAIHLFDEMPQRDIAS 271

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W  MIS  V+     +AL+L+R++   +   +++FTLS++L+A +       G+EIH Y 
Sbjct: 272 WNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYA 331

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG------ 239
           +R G +++  V +A+   Y +CGS+N    +F++M  RD+++WT MI  Y + G      
Sbjct: 332 IRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAV 391

Query: 240 ----------------------RREEGFA---LFSELIKSGIRPNAFTFAGVLNACADHA 274
                                 +  EG     LF  +++ G     FT  GV+NAC    
Sbjct: 392 DMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLL 451

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP--DLVSWTSL 332
             E+ +Q+HG++ + G+   +   +AL+ M SKCG ++++ ++F  +     + +  TS+
Sbjct: 452 KLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSM 511

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           I GYA+NG+P++A+  F      GT   D + F  +L  C   G  + G Q  H    K 
Sbjct: 512 ICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQ-IHCQALKT 570

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH--GNLDLAK 449
           G          I+ + ++     +A    + MP   D   W  L+ G  +H  G+  LA 
Sbjct: 571 GFHAELGVGNSIISMYSKCYNIDDAIKAFNTMP-GHDVVSWNGLIAGQLLHRQGDEALAI 629

Query: 450 RAAEALFEIEPENPATYVTMANIY 473
            ++     I+P+   T+V + + Y
Sbjct: 630 WSSMEKAGIKPD-AITFVLIVSAY 652



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 172/393 (43%), Gaps = 65/393 (16%)

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + N ++  Y K G + DA  +F  M   DV SY+ +IS F+K                  
Sbjct: 139 LGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSK------------------ 180

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                         N+  EA+ L+  M+       N+++  ++L+A      L +G ++H
Sbjct: 181 -------------LNRETEAIQLFFRMR-ISGIEPNEYSFVAILTACIRSLELEMGLQVH 226

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
              ++ G+     V +AL  +YGKCG ++ A  +FD+M  RD+ SW  MI    +    E
Sbjct: 227 ALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYE 286

Query: 243 EGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           +   LF  L ++ G + + FT + +L ACA   A   G+++H Y  RIG +     ++A+
Sbjct: 287 KALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAI 346

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD------------------ 343
           +  Y++CG++ +   +F  MP  D+++WT +I  Y + G+ D                  
Sbjct: 347 IGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYN 406

Query: 344 -------------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
                        KAL  F  +++ G +       GV+ AC     ++   Q  H    K
Sbjct: 407 ALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQ-IHGFIIK 465

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            G    A   A ++D+ ++ GR  +A+ +   +
Sbjct: 466 FGFRSNACIEAALIDMCSKCGRMDDADRMFQSL 498



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 169/359 (47%), Gaps = 29/359 (8%)

Query: 93  CSYNTMISGFTKGG--SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           C +++  S F      SL + +NL    P   N+      S     +  IE  DL+ +++
Sbjct: 58  CHFSSCTSQFLLSSPLSLTKPQNLESSFPLDSNYH-----SPQTNTDCLIEVDDLFNLLR 112

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                +S K+T             + L + +H  I++ G D+   + +A+   Y K G +
Sbjct: 113 -----LSVKYTD------------IDLARALHASILKLGEDTH--LGNAVIAAYIKLGLV 153

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A ++F  M   DVVS++A+I  + +  R  E   LF  +  SGI PN ++F  +L AC
Sbjct: 154 VDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTAC 213

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
                 E+G QVH    ++GY    F A+AL+ +Y KCG ++++  +F+ MP+ D+ SW 
Sbjct: 214 IRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWN 273

Query: 331 SLIAGYAQNGMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           ++I+   +    +KALE F +L ++ G + D      +LTAC       +G +  H+   
Sbjct: 274 TMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGRE-IHAYAI 332

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + GL         I+    R G  +    +  +MP++ D   W  ++      G +DLA
Sbjct: 333 RIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVR-DIITWTEMITAYMEFGLVDLA 390



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S++  C      E GK++H     +GF   + + N ++ MY+KC NI DA   F+ M 
Sbjct: 544 FTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMP 603

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGY--VRYNQPIEA 142
             DV S+N +I+G       ++A  ++  M +     D  ++  ++S Y     N   E 
Sbjct: 604 GHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDEC 663

Query: 143 LDLY---RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             L+   +M+ + E +  +  +L  VL     ++      E    I +  FD +  VW A
Sbjct: 664 RSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLE------EAEELINKMPFDPEVSVWRA 717

Query: 200 LSD 202
           L D
Sbjct: 718 LLD 720


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 268/470 (57%), Gaps = 6/470 (1%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ++ EA  I + +       ++S++    QN    E  + +  ++ +G KP +     ++ 
Sbjct: 332 KMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIA 391

Query: 70  MYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
             A+ GN      +         + D+   N+++  + K  S++    +FD+MP +D  S
Sbjct: 392 ASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 451

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WT +I+G+ +      AL+L+R +Q  E    +   +SS+L A S ++ +   KEIH YI
Sbjct: 452 WTTIIAGHAQNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKLISSVKEIHSYI 510

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +R G  SD V+ + + D+YG+CG+++ A ++F+ +  +DVVSWT+MI  Y   G   E  
Sbjct: 511 IRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEAL 569

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF  + ++G+ P++ +   +L+A A  +A + GK++HG++ R G+      AS LV MY
Sbjct: 570 ELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMY 629

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           ++CG +E S+ VFN +   DLV WTS+I  Y  +G    A++ F  +      PDHI FV
Sbjct: 630 ARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFV 689

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VL AC+H+GL+++G ++  S+K ++ L    +HYAC+VDLL R+    EA   +  M +
Sbjct: 690 AVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEV 749

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +P   +W +LLG C+IH N +L + AA+ L E++PENP  YV ++N+Y++
Sbjct: 750 EPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSA 799



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/474 (30%), Positives = 235/474 (49%), Gaps = 46/474 (9%)

Query: 5   LCNQRRLKEALQILHQI-SHPSPS------IYSSLIQFCRQNRALEEGKKVHSHL-KSSG 56
           +C +  + EA Q L  + ++ SPS       YSS+++ C   +AL EG++VH+H+  S+ 
Sbjct: 50  ICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNA 109

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
               VF+S  L+ MY KCG + DA+                                LFD
Sbjct: 110 LFNSVFLSTRLVFMYGKCGCLVDAE-------------------------------KLFD 138

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
            MP +  F+W AMI  YV   +P+ +L+LYR M+       +  T   +L A   ++  R
Sbjct: 139 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR-VSGIPLDACTFPCILKACGLLKDRR 197

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRY 235
            G E+HG  ++ G+ S   V +++  MY KC  +N ARQ+FD+M ++ DVVSW +MI  Y
Sbjct: 198 YGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 257

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
              G+  E   LF E+ K+ + PN +TF   L AC D +  + G  +H  + +  Y    
Sbjct: 258 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV 317

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F A+AL+ MY++ G +  +  +F  M   D +SW S+++G+ QNG+  +AL+++  +  +
Sbjct: 318 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 377

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD +  + ++ A   +G    G+Q  H+   K+GL         +VD+ A+      
Sbjct: 378 GQKPDLVAVISIIAASARSGNTLHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKY 436

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
            + +  KMP K D   W +++ G   H       RA E   E++ E     V M
Sbjct: 437 MDCIFDKMPDK-DVVSWTTIIAG---HAQNGSHSRALELFREVQLEGIDLDVMM 486



 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 232/471 (49%), Gaps = 46/471 (9%)

Query: 13  EALQILHQISHPS--PSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL++  ++   S  P+ Y+  + +Q C  +  +++G  +H+ +  S +   VF++N L+
Sbjct: 265 EALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 324

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MYA+ G + +A  +F  M + D  S+N+M+SGF + G   +A   + EM  RD      
Sbjct: 325 AMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM--RD------ 376

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
             +G     +P    DL  ++     S  +  TL               G +IH Y M+ 
Sbjct: 377 --AG----QKP----DLVAVISIIAASARSGNTLH--------------GMQIHAYAMKN 412

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G DSD  V ++L DMY K  S+     IFDKM D+DVVSWT +I  + Q G       LF
Sbjct: 413 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 472

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            E+   GI  +    + +L AC+        K++H Y+ R G        + +V +Y +C
Sbjct: 473 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVL-QNGIVDVYGEC 531

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GNV+ + ++F  +   D+VSWTS+I+ Y  NG+ ++ALE F L+ ++G +PD I  V +L
Sbjct: 532 GNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSIL 591

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +A      + KG +  H    + G        + +VD+ AR G   ++ +V + +  K D
Sbjct: 592 SAAASLSALKKGKE-IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK-D 649

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALF---EIEPENPATYVTMANIYASA 476
             LW S++    +HG      RAA  LF   E E   P     +A +YA +
Sbjct: 650 LVLWTSMINAYGMHG----CGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 239/433 (55%), Gaps = 32/433 (7%)

Query: 44  EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           EG ++H     S     + ++N +LDMY KC                             
Sbjct: 377 EGLQLHGLAIKSNLSSNICVANAILDMYGKC----------------------------- 407

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
             G+L +A  LFDEM  RD  SW A+I+   +     + L  +  M   +    ++FT  
Sbjct: 408 --GALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKME-PDEFTYG 464

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SVL A +  +    G E+HG I+++G      V SAL DMY KCG + EA +I  ++ ++
Sbjct: 465 SVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQ 524

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
            +VSW A+I  +  + + E+    FS +++ G+ P+ FT+A VL+ CA+ A   LGKQ+H
Sbjct: 525 TMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIH 584

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
             M ++      +  S LV MYSKCGN+ +S  +F   P+ D V+W ++I G+A +G+ +
Sbjct: 585 AQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGE 644

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +ALE FE +L    +P+H  FV VL AC+H G   KGL YF  +   + L    +HY+C+
Sbjct: 645 EALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCM 704

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VD+L RSG+  EA  +I  MP + D  +W +LL  C+I GN+++A++AA +L +++PE+ 
Sbjct: 705 VDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDS 764

Query: 464 ATYVTMANIYASA 476
           + Y  ++NIYA A
Sbjct: 765 SAYTLLSNIYADA 777



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/413 (32%), Positives = 225/413 (54%), Gaps = 4/413 (0%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S + Q C   RAL+ GK+ H+H+  SGF P VF++NCL+ MY KC  +  A  +F+EM 
Sbjct: 27  FSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMP 86

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-DNFSWTAMISGYVRYNQPIEALDLYR 147
           +RD+ S+NTM+ G    G +E A+ +F+ MP   D  SW ++ISGY++     +++ ++ 
Sbjct: 87  QRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFL 146

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M++    + +  TL+  L   S ++   LG +IHG  ++ GFD D V  SAL DMY KC
Sbjct: 147 KMRDL-GVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
            S+ ++  +F ++ D++ +SW+A I    Q  +   G  LF E+ + GI  +  T+A V 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            +CA  +A  LG Q+H +  +  +       +A + MY+KC N+ ++ K+F+ +P  +L 
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           S+ ++I GYA+N    +A + F  L K+    D +   G L+A        +GLQ  H +
Sbjct: 326 SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQ-LHGL 384

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
             K  L+        I+D+  + G   EA  +  +M ++ D   W +++  C 
Sbjct: 385 AIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIR-DPVSWNAIITACE 436



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 224/452 (49%), Gaps = 47/452 (10%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S S Y+S+ + C    A   G ++H H   + F   V +    LDMYAKC N+SDA    
Sbjct: 257 SQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDA---- 312

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                                        LF  +P  +  S+ AMI GY R  Q  +A  
Sbjct: 313 ---------------------------YKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFK 345

Query: 145 LYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           L+  +Q  +NS S ++ +LS  LSA + I+    G ++HG  +++   S+  V +A+ DM
Sbjct: 346 LFLQLQ--KNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDM 403

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG++ EA  +FD+M  RD VSW A+I    Q     +  + F  +++S + P+ FT+
Sbjct: 404 YGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTY 463

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL ACA   A   G +VHG + + G     F  SALV MYSKCG +E ++K+   +  
Sbjct: 464 GSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEE 523

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             +VSW ++I+G++     + +  +F  +L+ G +PD+  +  VL  C +   V  G Q 
Sbjct: 524 QTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQ- 582

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+   K  L       + +VD+ ++ G  H++  +  K P K D   W +++ G   HG
Sbjct: 583 IHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHG 641

Query: 444 NLDLAKRAAEALFE------IEPENPATYVTM 469
              L + A E LFE      I+P N AT+V++
Sbjct: 642 ---LGEEALE-LFEHMLHENIKP-NHATFVSV 668



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 134/297 (45%), Gaps = 35/297 (11%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T S +    S  + L+ GKE H +++ +GF     V + L  MY KC ++  A ++F++M
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 221 VDRDVVSWTAMI------GR--------------------------YFQEGRREEGFALF 248
             RD+VSW  M+      GR                          Y Q G  ++  A+F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++   G+  +  T A  L  C+    + LG Q+HG   ++G+D      SALV MY+KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
            ++E+S  VF+ +P  + +SW++ IAG  QN    + L+ F+ + + G       +  V 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 369 TACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
            +C        G Q + H++K   G           +D+ A+     +A  + S +P
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVG--TATLDMYAKCDNMSDAYKLFSLLP 320



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 34/210 (16%)

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TF+ +   C++  A + GK+ H +M   G+ P  F  + L+ MY KC  +E + KVF  M
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 322 PRPDL--------------------------------VSWTSLIAGYAQNGMPDKALEYF 349
           P+ D+                                VSW SLI+GY QNG   K++  F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +   G   DH      L  C+       G+Q  H I  + G  Y     + +VD+ A+
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQ-IHGIAVQMGFDYDVVTGSALVDMYAK 204

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
                ++ DV S++P K +   W++ + GC
Sbjct: 205 CNSLEDSLDVFSELPDK-NWISWSAAIAGC 233


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 144/420 (34%), Positives = 235/420 (55%), Gaps = 32/420 (7%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
           + DV   N      +  G +E AR LFD  P RD  SW  +I GYVR   P EAL+L+ R
Sbjct: 157 DSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWR 216

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M+        ++ T+ + +S    ++ L LG+ +HG++   G      + +AL DMY KC
Sbjct: 217 MVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKC 276

Query: 208 GSI-------------------------------NEARQIFDKMVDRDVVSWTAMIGRYF 236
           GS+                               ++AR++FD+M +RDV  W A++  Y 
Sbjct: 277 GSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYV 336

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           Q  + +E  +LF E+ ++ + P+  T   +L AC+   A E+G  VH Y+ +        
Sbjct: 337 QCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVA 396

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             ++L+ MY+KCGN+E +  +F  +P  + ++WT++I G A +G  ++A+E+F  +++ G
Sbjct: 397 LGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELG 456

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD I F+GVL+AC HAGLV +G ++F  ++ K+ L     HY+C++DLL R+G   EA
Sbjct: 457 QKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEA 516

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           E +++ MPM+PD  +W ++   CR+ GN+ L ++AA  L EI+P +   YV +AN+YA A
Sbjct: 517 EQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEA 576



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 177/314 (56%), Gaps = 3/314 (0%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           +  P      + +  C Q R LE G+++H  + S G    V + N L+DMY KCG++  A
Sbjct: 223 VVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMA 282

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           +++F+ ++ R V S+ TMI GF K G ++ AR +FDEMP+RD F W A+++GYV+  Q  
Sbjct: 283 KSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCK 342

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           EAL L+  MQ   + V ++ T+ ++L+A S +  L +G  +H YI +        + ++L
Sbjct: 343 EALSLFHEMQE-ASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSL 401

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            DMY KCG+I +A  IF ++ +++ ++WTAMI      G   E    F  +I+ G +P+ 
Sbjct: 402 IDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDE 461

Query: 261 FTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            TF GVL+AC      + G++    M T+   +      S ++ +  + G+++ ++++ N
Sbjct: 462 ITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVN 521

Query: 320 GMP-RPDLVSWTSL 332
            MP  PD V W ++
Sbjct: 522 TMPMEPDAVVWGAI 535



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 35/349 (10%)

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L LYR +     +  +  T   +L A + ++    G     +++R G DSD  V +A + 
Sbjct: 109 LPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATH 168

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNA 260
                G + +AR++FD+   RD+VSW  +IG Y + G   E   LF  ++     +RP+ 
Sbjct: 169 FLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDE 228

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T    ++ C      ELG+++HG++   G        +AL+ MY KCG++E +K VF  
Sbjct: 229 VTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFER 288

Query: 321 MPRPDLVSWTSLIAGYAQNG-----------MPDK--------------------ALEYF 349
           +    +VSWT++I G+A+ G           MP++                    AL  F
Sbjct: 289 IEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLF 348

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             + ++   PD I  V +LTAC+  G ++ G+ + H   EKH L ++      ++D+ A+
Sbjct: 349 HEMQEASVVPDEITMVNLLTACSQLGALEMGM-WVHRYIEKHRLVFSVALGTSLIDMYAK 407

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
            G   +A  +  ++P K +   W +++ G   HG+ + A      + E+
Sbjct: 408 CGNIEKAIHIFKEIPEK-NALTWTAMICGLANHGHANEAIEHFRTMIEL 455


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/524 (32%), Positives = 269/524 (51%), Gaps = 75/524 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P  ++S++       AL+ G++VH+     G +  VF+ N L++MYAKCG + DA+++
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE-------MPQRDNFS----------- 125
           F+ M+ RD+ S+NT+++G        +A  LF E       M Q    +           
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 126 ---------------------WTAMISGYVRYNQPIEALDLYRMMQNFENSVS------- 157
                                 TA+   Y +  +  +AL+++ M     N VS       
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 158 ------------------------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
                                   N+FT S++L A  +I    L  +IH  +++T +   
Sbjct: 379 CIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHI 434

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V +AL   Y K GS  +A  IF  +  +DVV+W+AM+  + Q G  E    LF+++  
Sbjct: 435 PFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAI 494

Query: 254 SGIRPNAFTFAGVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
            GI+PN FT + V++ACA   A  + G+Q H    +  Y      +SALV MYS+ GN++
Sbjct: 495 QGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNID 554

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
           +++ VF      DLVSW S+I+GYAQ+G   KA+E F  +  SG Q D + F+ V+  CT
Sbjct: 555 SAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCT 614

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           H GLV +G QYF S+   H +  T +HYAC+VDL +R+G+  E   +I  MP      +W
Sbjct: 615 HNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVW 674

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +LLG CR+H N++L K +A+ L  +EP + +TYV ++NIYA+A
Sbjct: 675 RTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAA 718



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 4/340 (1%)

Query: 111 ARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
           AR   DE+P+RD       ++  Y R    +E LD + + +     + +  TLS VL A 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARR-GGVLVDSATLSCVLKAC 109

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
            ++    LG+++H   ++ G D  EV   ++L DMY KCGS+ E  ++F+ M  ++VV+W
Sbjct: 110 RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T+++          E  ALF  +   GI PN FTFA VL+A A   A +LG++VH    +
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK 229

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G     F  ++L++MY+KCG VE++K VFN M   D+VSW +L+AG   N    +AL+ 
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F     +  +     +  V+  C +   +    Q  HS   KHG   T +    + D  +
Sbjct: 290 FHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYS 348

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + G   +A ++ S      +   W +++ GC  +G++ LA
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 172/357 (48%), Gaps = 28/357 (7%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +V +  +++  + K GS+ +   +F+ MP+++  +WT++++G        E + L+  M+
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    N FT +SVLSAV++   L LG+ +H   ++ G  S   V ++L +MY KCG +
Sbjct: 194 A-EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLV 252

Query: 211 NEARQIFDKMVDRDVVSW-TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
            +A+ +F+ M  RD+VSW T M G    E    E   LF E   +  +    T+A V+  
Sbjct: 253 EDAKSVFNWMETRDMVSWNTLMAGLQLNECEL-EALQLFHESRATMGKMTQSTYATVIKL 311

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-GMPRPDLVS 328
           CA+     L +Q+H  + + G+       +AL   YSKCG + ++  +F+      ++VS
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-------THAGLVDKGL 381
           WT++I+G  QNG    A+  F  + +    P+   +  +L A         HA ++    
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNY 431

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS--KMPMKPDKFLWASLL 436
           Q+   +                  LLA   +F   ED +S  KM  + D   W+++L
Sbjct: 432 QHIPFVGTA---------------LLASYSKFGSTEDALSIFKMIEQKDVVAWSAML 473


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 258/459 (56%), Gaps = 33/459 (7%)

Query: 20  QISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
           Q++  SP  ++   L++ C     L+ G+ VH+ +   GF+  VF+ N L+ +YAKC  +
Sbjct: 111 QLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRL 170

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
             A+T+F+ +                              +P+R   SWTA++S Y +  
Sbjct: 171 GCARTVFEGL-----------------------------PLPERTIVSWTAIVSAYAQNG 201

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           +P+EAL+++  M+  +    +   L SVL+A + +Q L  G+ IH  +M+ G +++  + 
Sbjct: 202 EPVEALEIFSQMRKMDVK-PDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLL 260

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
            +L+ MY KCG +  A+ +FDKM   +++ W AMI  Y + G  ++   LF E+I   +R
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVR 320

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+  +    ++ACA   + E  + +  Y++R  Y    F +SAL+ M++KCG+VE ++ V
Sbjct: 321 PDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSV 380

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+     D+V W+++I GY  +G   +A+  +  + + G  P+ + F+G+L AC H+G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMV 440

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +G  +F+ + + H +     HYACI+DLL R+G   +A +VI  MP++P   +W +LL 
Sbjct: 441 REGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            C+ H +++L K AA+ LF I+P N   YV ++N+YA+A
Sbjct: 500 ACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAA 538



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 178/351 (50%), Gaps = 9/351 (2%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I   +  G +  AR +FD++P+   F W A+I GY R N   +AL +Y  MQ       
Sbjct: 59  LIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQ-LARVSP 117

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + FT   +L A   +  L++G+ +H  + R GF++D  V + L  +Y KC  +  AR +F
Sbjct: 118 DSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVF 177

Query: 218 D--KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +   + +R +VSWTA++  Y Q G   E   +FS++ K  ++P+      VLNA      
Sbjct: 178 EGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQD 237

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            E G+ +H  + ++G +       +L  MY+KCG V  +K +F+ M  P+L+ W ++I+G
Sbjct: 238 LEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           YA+NG    A++ F  ++    +PD I     ++AC   G +++       +       Y
Sbjct: 298 YAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS---DY 354

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             D +  + ++D+ A+ G    A  V  +  +  D  +W++++ G  +HG 
Sbjct: 355 RDDVFISSALIDMFAKCGSVECARSVFDR-TLDRDVVVWSAMIVGYGLHGQ 404



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 154/302 (50%), Gaps = 9/302 (2%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++IH  ++  G      + + L       G I  ARQ+FD +    V  W A+I  Y + 
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              ++   ++S++  + + P++FTF  +L AC   +  ++G+ VH  + R+G++   F  
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQ 157

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
           + L+ +Y+KC  +  ++ VF G+P P+  +VSWT++++ YAQNG P +ALE F  + K  
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD 217

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +PD +  V VL A T    +++G +  H+   K GL    D    +  + A+ G+   A
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQG-RSIHASVMKMGLETEPDLLISLNTMYAKCGQVATA 276

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYA 474
           + +  KM   P+  LW +++ G   +G    AK A +   E+  ++  P T    + I A
Sbjct: 277 KILFDKMK-SPNLILWNAMISGYAKNG---FAKDAIDLFHEMINKDVRPDTISITSAISA 332

Query: 475 SA 476
            A
Sbjct: 333 CA 334


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 257/470 (54%), Gaps = 47/470 (10%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R++EA ++ +++   +   ++++I    +N   +E   +   +     +  V   N ++ 
Sbjct: 123 RIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMP----ERNVVSWNTVMT 178

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
             A CG I DA+ LF+EM+ERDV S+ TM++G +K G ++ AR +FD+MP R+  SW AM
Sbjct: 179 ALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAM 238

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+GY +  +  EAL L+  M                                        
Sbjct: 239 IAGYAQNGRFDEALKLFERMP--------------------------------------- 259

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
            + D   W+ +   + + G +N A Q+F  M  ++V++WTAM+  Y Q G  EE   LF+
Sbjct: 260 -ERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFN 318

Query: 250 EL-IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           ++    G++P   TF  VL AC+D A    G+Q+H  +++  +   ++  SAL++MYSKC
Sbjct: 319 KMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKC 378

Query: 309 GNVENSKKVFN-GMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           G+   +KK+F+ G+    DL++W  +IA YA +G  ++A+  F  + + G Q + + +VG
Sbjct: 379 GDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVG 438

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +LTAC+HAGL D+G +YF  + +   +    DHY C++DL  R+GR  EA ++I  +  +
Sbjct: 439 LLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKE 498

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
               LW +LL GC +HGN D+ K  A+ + ++EPEN  TY+  +N+YAS 
Sbjct: 499 VSLSLWGALLAGCSVHGNADIGKLVADKVLKMEPENADTYLLASNMYASV 548


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 266/469 (56%), Gaps = 19/469 (4%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS+++ C  +  L+ GK VH+ +  +G    V + N +LD+Y KC     A+ L
Sbjct: 388 PNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERL 447

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M E DV S+N MI  + + G +E++ ++F  +P +D  SW  ++ G ++      AL
Sbjct: 448 FELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHAL 507

Query: 144 D-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + LY M++      +  F+++ +L+  S++  + LG+++HG +++ GFDSD  + S+L +
Sbjct: 508 EQLYCMVECGTEFSAVTFSIALILA--SSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVE 565

Query: 203 MYGKCGSINEARQIF-DKMVD---------------RDVVSWTAMIGRYFQEGRREEGFA 246
           MY KCG +++A  I  D  +D                 +VSW +M+  Y   G+ E+G  
Sbjct: 566 MYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLK 625

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
            F  +++  +  +  T   +++ACA+    E G+ VH Y+ +IG+   ++  S+L+ MYS
Sbjct: 626 TFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYS 685

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K G+++++  VF     P++V WTS+I+GYA +G    A+  FE +L  G  P+ + F+G
Sbjct: 686 KSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLG 745

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL AC+HAGL+++G +YF  +K+ + +    +H   +VDL  R+G   + ++ I K  + 
Sbjct: 746 VLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGIS 805

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
               +W S L  CR+H N+++ K  +E L ++ P +P  YV ++N+ AS
Sbjct: 806 HLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCAS 854



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 200/395 (50%), Gaps = 50/395 (12%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +++ + K  ++  A+ LFDE+PQR+  +WT +ISG+ R        +L+R MQ  + +
Sbjct: 328 NHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQA-KGA 386

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N++TLSSVL   S    L+LGK +H +++R G D D V+ +++ D+Y KC     A +
Sbjct: 387 CPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAER 446

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL------------------------ 251
           +F+ M + DVVSW  MIG Y + G  E+   +F  L                        
Sbjct: 447 LFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHA 506

Query: 252 -------IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
                  ++ G   +A TF+  L   +  +  ELG+Q+HG + + G+D   F  S+LV M
Sbjct: 507 LEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEM 566

Query: 305 YSKCGNVENSKKVFNGM----------------PRPDLVSWTSLIAGYAQNGMPDKALEY 348
           Y KCG ++ +  +   +                P+  +VSW S+++GY  NG  +  L+ 
Sbjct: 567 YCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKT 626

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F L+++     D      +++AC +AG+++ G ++ H+  +K G    A   + ++D+ +
Sbjct: 627 FRLMVRELVVVDIRTVTTIISACANAGILEFG-RHVHAYVQKIGHRIDAYVGSSLIDMYS 685

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +SG   +A  V  +   +P+  +W S++ G  +HG
Sbjct: 686 KSGSLDDAWMVF-RQSNEPNIVMWTSMISGYALHG 719



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+ L+ +Y+K  N+ +++K+F+ +P+ +  +WT LI+G+A+ G  +     F  +   G 
Sbjct: 327 ANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGA 386

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQY---FHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
            P+      VL  C+    +D  LQ     H+   ++G+         I+DL  +   F 
Sbjct: 387 CPNQYTLSSVLKCCS----LDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFE 442

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGN----LDLAKR 450
            AE +   M  + D   W  ++G     G+    LD+ +R
Sbjct: 443 YAERLFELMN-EGDVVSWNIMIGAYLRAGDVEKSLDMFRR 481


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 240/448 (53%), Gaps = 35/448 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           ++ ++L    R    L EG + H+  + +GF   V + N L+  Y  CG   DA      
Sbjct: 119 TLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDA------ 172

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                                    R +FDEM +RD  SWTA++S + R    +EAL + 
Sbjct: 173 -------------------------RKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVL 207

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M    +   N+ TL+SVL A   +   R GK +HG+  R   + + +V +AL DMY K
Sbjct: 208 AEM----DVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVK 263

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           C  ++ AR++FD ++ RD+VSWT MI    Q  R  E   +F+ +  SG++P+    + V
Sbjct: 264 CEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTV 323

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+ACA   A E G+ VH Y+ R G +      +++V MY KCG ++ +  +F  MP  ++
Sbjct: 324 LSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNV 383

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            SW +LI G+A +G   +AL+ F+ ++ SG  P+ + F+ VL AC H+GLV +G Q F  
Sbjct: 384 SSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFEL 443

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           + + + L+   DHY C+VDLL R+G   EA DVI  MPM+P  F W +LL  C+ HG +D
Sbjct: 444 MTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMD 503

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYA 474
            +++    + E+E      YV ++N+YA
Sbjct: 504 FSQQILMHIHELESSGNGIYVLLSNMYA 531



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 156/334 (46%), Gaps = 35/334 (10%)

Query: 13  EALQILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           EAL +L ++   P+    +S++  C        GK VH        +  + + N LLDMY
Sbjct: 202 EALGVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMY 261

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
            KC  +  A+ +FD +  RD+ S+  MISG                              
Sbjct: 262 VKCEKLDLARRVFDMLLARDIVSWTVMISGL----------------------------- 292

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
             V+  +P EAL+++  MQ       +K  LS+VLSA +++  L  G+ +H YI R G +
Sbjct: 293 --VQCKRPSEALEVFNAMQ-ISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIE 349

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            D  V +++ DMY KCG ++ A  IF +M  ++V SW A+I  +   GR  E    F  +
Sbjct: 350 WDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRM 409

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGN 310
           + SG+ PN  TF  VL AC      + G+Q+   MT+     P+      +V +  + G 
Sbjct: 410 VASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGL 469

Query: 311 VENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPD 343
           ++ +  V   MP RP + +W +L++    +G  D
Sbjct: 470 IQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMD 503



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 38/247 (15%)

Query: 2   IDILCNQRRLKEALQILH--QIS--HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  L   +R  EAL++ +  QIS   P   + S+++  C    ALE G+ VH +++  G 
Sbjct: 289 ISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGI 348

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +  V +   ++DMY KCG +  A ++F EM  ++V S+N +I+GF   G   +A + FD 
Sbjct: 349 EWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDR 408

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M          + SG      P                  N+ T  +VL A      ++ 
Sbjct: 409 M----------VASGL----HP------------------NEVTFITVLGACCHSGLVQE 436

Query: 178 GKEIHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRY 235
           G+++   + ++      E  +  + D+ G+ G I EA  +   M  R  V +W  ++   
Sbjct: 437 GRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSAC 496

Query: 236 FQEGRRE 242
              GR +
Sbjct: 497 QAHGRMD 503



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 42/258 (16%)

Query: 228 WTAMIGRYFQEGRREEGFALFSELI-----KSGIRPNAFTFAGVLNACAD-HAAEELGKQ 281
           + A+I      G     F  F+ L+      +G RP+ +T    L ACA        G Q
Sbjct: 80  FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
            H    + G+       +ALV  Y  CG   +++KVF+ M   D+VSWT+L++ + + GM
Sbjct: 140 AHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGM 199

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ----YFHSIKEKHGLTYTA 397
               +E   +L +    P+ +    VL AC + G    G      YF   KE + +   A
Sbjct: 200 ---FMEALGVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNA 256

Query: 398 --DHYA------------------------CIVDLLARSGRFHEAEDVISKMPM---KPD 428
             D Y                          ++  L +  R  EA +V + M +   KPD
Sbjct: 257 LLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPD 316

Query: 429 KFLWASLLGGCRIHGNLD 446
           K + +++L  C   G L+
Sbjct: 317 KVVLSTVLSACASLGALE 334


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 269/479 (56%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+     R+  A  I  ++       +++LI  C  N       ++   +K SG  P V
Sbjct: 244 VDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNV 303

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDE 117
           F  + +L   +  G     + +   M + +  S +     ++  + K   L+ AR +FD 
Sbjct: 304 FTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDW 363

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  RD     A+ISG     +  EAL L+  ++  E    N+ TL++VL + ++++    
Sbjct: 364 MFHRDLILCNALISGCSHGGRHDEALSLFYELRK-EGLGVNRTTLAAVLKSTASLEAAST 422

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            +++H   ++ GF  D  V + L D Y KC  +++A ++F++    D+++ T+MI    Q
Sbjct: 423 TRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQ 482

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               E    LF E+++ G+ P+ F  + +LNACA  +A E GKQVH ++ +  +   +FA
Sbjct: 483 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV+ Y+KCG++E+++  F+ +P   +VSW+++I G AQ+G   +ALE F  ++  G 
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI    VL AC HAGLVD+  +YF+S+KE  G+  T +HY+C++DLL R+G+  +A 
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++++ MP + +  +W +LLG  R+H + +L K AAE LF +EPE   T+V +AN YASA
Sbjct: 663 ELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASA 721



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 229/469 (48%), Gaps = 50/469 (10%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +A+Q+  ++      P+   +S ++  C  +R +E G++VH+ +   G+   VF +N L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY K G +  A  +F++M + DV S+N +ISG    G   +A  L  +M          
Sbjct: 245 DMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM---------- 294

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                                  +   V N FTLSS+L A S      LG++IHG++++ 
Sbjct: 295 ----------------------KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKA 332

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
             DSD+ +   L DMY K   +++AR++FD M  RD++   A+I      GR +E  +LF
Sbjct: 333 NADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLF 392

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            EL K G+  N  T A VL + A   A    +QVH    +IG+   +   + L+  Y KC
Sbjct: 393 YELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKC 452

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
             + ++ +VF      D+++ TS+I   +Q    + A++ F  +L+ G +PD  V   +L
Sbjct: 453 SCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLL 512

Query: 369 TACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPM 425
            AC      ++G Q + H IK +    + +D +A   +V   A+ G   +AE   S +P 
Sbjct: 513 NACASLSAYEQGKQVHAHLIKRQ----FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE--NPATYVTMANI 472
           +     W++++GG   HG+    KRA E    +  E  NP  ++TM ++
Sbjct: 569 R-GVVSWSAMIGGLAQHGH---GKRALELFGRMVDEGINP-NHITMTSV 612



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 187/373 (50%), Gaps = 22/373 (5%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +IS ++K      AR  FDE+P   + SW+++++ Y     P  A+  +  M+  E  
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGV 99

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N+F L  VL  V      RLG ++H   M TGF SD  V +AL  MYG  G +++AR+
Sbjct: 100 CCNEFALPVVLKCVPDA---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 156

Query: 216 IFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           +F++   +R+ VSW  ++  Y +  +  +   +F E++ SGI+P  F F+ V+NAC    
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             E G+QVH  + R+GYD   F A+ALV MY K G V+ +  +F  MP  D+VSW +LI+
Sbjct: 217 NIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALIS 276

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G   NG   +A+E    +  SG  P+      +L AC+ AG  D G Q        HG  
Sbjct: 277 GCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI-------HGFM 329

Query: 395 YTA----DHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             A    D Y    +VD+ A++    +A  V   M    D  L  +L+ GC   G  D  
Sbjct: 330 IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHD-- 386

Query: 449 KRAAEALFEIEPE 461
             A    +E+  E
Sbjct: 387 -EALSLFYELRKE 398



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 199/432 (46%), Gaps = 72/432 (16%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFT 103
           G +VH+   ++GF   VF++N L+ MY   G + DA+ +F+E   ER+  S+N ++S + 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           K      A  +F EM       W+ +        QP E                  F  S
Sbjct: 179 KNDQCGDAIQVFGEM------VWSGI--------QPTE------------------FGFS 206

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            V++A +  + +  G+++H  ++R G+D D    +AL DMY K G ++ A  IF+KM D 
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVVSW A+I      G       L  ++  SG+ PN FT + +L AC+   A +LG+Q+H
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G+M +   D   +    LV MY+K   +++++KVF+ M   DL+   +LI+G +  G  D
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 344 KALEYFELLLKSGTQPDHIVFVGVL--TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
           +AL  F  L K G   +      VL  TA   A    + +   H++  K G  + A    
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQV---HALAVKIGFIFDAHVVN 443

Query: 402 CIVD------LLARSGRFHE---AEDVISKMPM-------------------------KP 427
            ++D       L+ + R  E   + D+I+   M                         +P
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 428 DKFLWASLLGGC 439
           D F+ +SLL  C
Sbjct: 504 DPFVLSSLLNAC 515


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 237/413 (57%), Gaps = 9/413 (2%)

Query: 70  MYAKCGNISDAQT-------LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           ++  C N+ + +        +F    + D  + N+M++ + + G    AR +FDE+ ++D
Sbjct: 123 VFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKD 182

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             SW +++SGY +     EA++++  ++       ++ +L SVL A   +  L LG+ + 
Sbjct: 183 LVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVE 242

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           G+++  G   +  + SAL  MY KCG +  +R+IFD M  RD ++W A I  Y Q G  +
Sbjct: 243 GFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMAD 302

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E  +LF  + ++G+ PN  T   VL+ACA   A +LGKQ+  Y T  G     F A+AL+
Sbjct: 303 EAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALI 362

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQPD 360
            MY+KCG++E++++VFN MPR +  SW ++I+  A +G   +AL  FE +   G   +P+
Sbjct: 363 DMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPN 422

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I FV +L+AC HAGLVD+G + F  +    GL    +HY+C+VDLL+R+G  +EA DVI
Sbjct: 423 DITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVI 482

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
            KMP KPD     +L   C+   N+D+ +R  + L E++P N   Y+  + IY
Sbjct: 483 EKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIY 535



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 203/411 (49%), Gaps = 13/411 (3%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM-PQRDNFS 125
           LL +  +C +    Q +  +     +   N ++S          +  +F  + P  ++++
Sbjct: 24  LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA 83

Query: 126 WTAMISGYVR--YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           +  M+       ++ P+  L LY  M+   N   N FT   V  A + ++ +R+ +  H 
Sbjct: 84  FNIMLRATTTTWHDYPL-TLHLYHQMKTL-NISPNNFTFPFVFLACANLEEIRMARLAHC 141

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            + + G D+D    +++  MY +CG    AR++FD++ ++D+VSW +++  Y + G   E
Sbjct: 142 EVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFARE 201

Query: 244 GFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
              +F  L  +SG  P+  +   VL AC +    ELG+ V G++   G    S+  SAL+
Sbjct: 202 AVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALI 261

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MYSKCG + +S+++F+GMP  D ++W + I+ YAQNGM D+A+  F  + ++G  P+ +
Sbjct: 262 SMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKV 321

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
               VL+AC   G +D G Q         GL +       ++D+ A+ G    A+ V + 
Sbjct: 322 TLTAVLSACASIGALDLGKQ-MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFND 380

Query: 423 MPMKPDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEPENPATYVTM 469
           MP K D   W +++     HG     L L +R ++      P N  T+V++
Sbjct: 381 MPRKNDAS-WNAMISALASHGKAKEALSLFERMSDEGGSARP-NDITFVSL 429



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 163/353 (46%), Gaps = 43/353 (12%)

Query: 12  KEALQILHQISH-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +EA+++  ++       P      S++  C +   LE G+ V   +   G K   +I + 
Sbjct: 200 REAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSA 259

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ MY+KCG +  ++ +FD M  RD  ++N  IS + + G  ++A +LF  M        
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK------- 312

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                     EN V  NK TL++VLSA ++I  L LGK++  Y 
Sbjct: 313 --------------------------ENGVDPNKVTLTAVLSACASIGALDLGKQMDEYA 346

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              G   D  V +AL DMY KCGS+  A+++F+ M  ++  SW AMI      G+ +E  
Sbjct: 347 THRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEAL 406

Query: 246 ALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALV 302
           +LF  +   G   RPN  TF  +L+AC      + G ++   M T  G  P     S +V
Sbjct: 407 SLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMV 466

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            + S+ G++  +  V   MP +PD V+  +L +   +    D      ++LL+
Sbjct: 467 DLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLE 519


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 247/453 (54%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS     S++      R +  GK++H +   SGF   V IS  L+DMYAKCG        
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG-------- 285

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  SLE AR LFD M +R+  SW +MI  YV+   P EA+
Sbjct: 286 -----------------------SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            +++ M + E       ++   L A + +  L  G+ IH   +  G D +  V ++L  M
Sbjct: 323 LIFQKMLD-EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISM 381

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  ++ A  +F K+  R +VSW AMI  + Q GR  +    FS++    ++P+ FT+
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTY 441

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             V+ A A+ +     K +HG + R   D   F  +ALV MY+KCG +  ++ +F+ M  
Sbjct: 442 VSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE 501

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             + +W ++I GY  +G    ALE FE + K   +P+ + F+ V++AC+H+GLV+ GL+ 
Sbjct: 502 RHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKC 561

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+ +KE + +  + DHY  +VDLL R+GR +EA D I +MP+KP   ++ ++LG C+IH 
Sbjct: 562 FYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHK 621

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++ A++AAE LFE+ P++   +V +ANIY +A
Sbjct: 622 NVNFAEKAAERLFELNPDDGGYHVLLANIYRAA 654



 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 225/451 (49%), Gaps = 42/451 (9%)

Query: 11  LKEALQILHQISHP--SPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L +ALQ   ++ +    P +Y  + L++ C     L  GK++H  L  SGF   +F    
Sbjct: 116 LDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTG 175

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L +MYAKC  ++                               +AR +FD MP+RD  SW
Sbjct: 176 LENMYAKCRQVN-------------------------------EARKVFDRMPERDLVSW 204

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             +++GY +      AL++ + M   EN   +  T+ SVL AVSA++ + +GKEIHGY M
Sbjct: 205 NTIVAGYSQNGMARMALEMVKSMCE-ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAM 263

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R+GFDS   + +AL DMY KCGS+  ARQ+FD M++R+VVSW +MI  Y Q    +E   
Sbjct: 264 RSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML 323

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F +++  G++P   +  G L+ACAD    E G+ +H     +G D      ++L+ MY 
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYC 383

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KC  V+ +  +F  +    LVSW ++I G+AQNG P  AL YF  +     +PD   +V 
Sbjct: 384 KCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           V+TA     +     ++ H +  +  L         +VD+ A+ G    A  +I  M  +
Sbjct: 444 VITAIAELSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR-LIFDMMSE 501

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
                W +++ G   HG      +AA  LFE
Sbjct: 502 RHVTTWNAMIDGYGTHG----FGKAALELFE 528



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 5/272 (1%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           +L   S+++ LR   +I   + + G   +    + L  ++ + GS++EA ++F+ +  + 
Sbjct: 43  LLERCSSLKELR---QILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
            V +  M+  + +    ++    F  +    + P  + F  +L  C D A   +GK++HG
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
            + + G+    FA + L +MY+KC  V  ++KVF+ MP  DLVSW +++AGY+QNGM   
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           ALE  + + +   +P  I  V VL A +   L+  G +  H    + G     +    +V
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG-KEIHGYAMRSGFDSLVNISTALV 278

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           D+ A+ G    A  +   M ++ +   W S++
Sbjct: 279 DMYAKCGSLETARQLFDGM-LERNVVSWNSMI 309


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 232/432 (53%), Gaps = 41/432 (9%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           + VHSH+   G     F+ N L+D Y+K G  SDA+ +FDEM ERDV S+NT ++   + 
Sbjct: 455 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE 514

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G L   R LFDEMP++D  SW  ++ GY +  +   A +L++ M                
Sbjct: 515 GELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMP--------------- 559

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
                                    + + V WS +   Y K G +  AR IFDKM  +++
Sbjct: 560 -------------------------ERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 594

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V+WT M+    Q+G  +E   LF+++ ++ +  +      +L ACA+  +  LGK++H Y
Sbjct: 595 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 654

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG-MPRPDLVSWTSLIAGYAQNGMPDK 344
           + +      +   +AL+ M+ KCG V  +  VF+    + D VSW S+I G+A +G  DK
Sbjct: 655 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 714

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           ALE F  + + G  PD +  + VL+ACTH G VD+G ++F +++  +G+    +HY C++
Sbjct: 715 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 774

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           DLL R G   EA D+I  MP +P++ +W SLL  CR+H N++ A+ A   L +++P N  
Sbjct: 775 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 834

Query: 465 TYVTMANIYASA 476
            Y  ++NIYA A
Sbjct: 835 NYAVLSNIYAEA 846



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 6   CNQRRL-KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           C Q+ L  EA ++  Q+   S  +      S++  C ++ +L  GK++H +++       
Sbjct: 604 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 663

Query: 61  VFISNCLLDMYAKCGNISDAQTLFD-EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             + N L+DM+ KCG ++ A  +FD E  ++D  S+N++I GF   G  ++A  LF +M 
Sbjct: 664 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 723

Query: 120 QR 121
           Q+
Sbjct: 724 QQ 725


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/479 (32%), Positives = 269/479 (56%), Gaps = 5/479 (1%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+     R+  A  I  ++       +++LI  C  N       ++   +K SG  P V
Sbjct: 244 VDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNV 303

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDE 117
           F  + +L   +  G     + +   M + +  S +     ++  + K   L+ AR +FD 
Sbjct: 304 FTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDW 363

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  RD     A+ISG     +  EAL L+  ++  E    N+ TL++VL + ++++    
Sbjct: 364 MFHRDLILCNALISGCSHGGRHDEALSLFYELRK-EGLGVNRTTLAAVLKSTASLEAAST 422

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            +++H   ++ GF  D  V + L D Y KC  +++A ++F++    D+++ T+MI    Q
Sbjct: 423 TRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQ 482

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               E    LF E+++ G+ P+ F  + +LNACA  +A E GKQVH ++ +  +   +FA
Sbjct: 483 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV+ Y+KCG++E+++  F+ +P   +VSW+++I G AQ+G   +ALE F  ++  G 
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            P+HI    VL AC HAGLVD+  +YF+S+KE  G+  T +HY+C++DLL R+G+  +A 
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++++ MP + +  +W +LLG  R+H + +L K AAE LF +EPE   T+V +AN YASA
Sbjct: 663 ELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASA 721



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 229/469 (48%), Gaps = 50/469 (10%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +A+Q+  ++      P+   +S ++  C  +R +E G++VH+ +   G+   VF +N L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMY K G +  A  +F++M + DV S+N +ISG    G   +A  L  +M          
Sbjct: 245 DMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM---------- 294

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                                  +   V N FTLSS+L A S      LG++IHG++++ 
Sbjct: 295 ----------------------KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKA 332

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
             DSD+ +   L DMY K   +++AR++FD M  RD++   A+I      GR +E  +LF
Sbjct: 333 NADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLF 392

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            EL K G+  N  T A VL + A   A    +QVH    +IG+   +   + L+  Y KC
Sbjct: 393 YELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKC 452

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
             + ++ +VF      D+++ TS+I   +Q    + A++ F  +L+ G +PD  V   +L
Sbjct: 453 SCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLL 512

Query: 369 TACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPM 425
            AC      ++G Q + H IK +    + +D +A   +V   A+ G   +AE   S +P 
Sbjct: 513 NACASLSAYEQGKQVHAHLIKRQ----FMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE--NPATYVTMANI 472
           +     W++++GG   HG+    KRA E    +  E  NP  ++TM ++
Sbjct: 569 R-GVVSWSAMIGGLAQHGH---GKRALELFGRMVDEGINP-NHITMTSV 612



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 188/373 (50%), Gaps = 22/373 (5%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +IS ++K      AR +FDE+P   + SW+++++ Y     P  A+  +  M+  E  
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGV 99

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             N+F L  VL  V      RLG ++H   M TGF SD  V +AL  MYG  G +++AR+
Sbjct: 100 CCNEFALPVVLKCVPDA---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 156

Query: 216 IFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           +F++   +R+ VSW  ++  Y +  +  +   +F E++ SGI+P  F F+ V+NAC    
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             E G+QVH  + R+GYD   F A+ALV MY K G V+ +  +F  MP  D+VSW +LI+
Sbjct: 217 NIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALIS 276

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G   NG   +A+E    +  SG  P+      +L AC+ AG  D G Q        HG  
Sbjct: 277 GCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI-------HGFM 329

Query: 395 YTA----DHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             A    D Y    +VD+ A++    +A  V   M    D  L  +L+ GC   G  D  
Sbjct: 330 IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHD-- 386

Query: 449 KRAAEALFEIEPE 461
             A    +E+  E
Sbjct: 387 -EALSLFYELRKE 398



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 199/432 (46%), Gaps = 72/432 (16%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFT 103
           G +VH+   ++GF   VF++N L+ MY   G + DA+ +F+E   ER+  S+N ++S + 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           K      A  +F EM       W+ +        QP E                  F  S
Sbjct: 179 KNDQCGDAIQVFGEM------VWSGI--------QPTE------------------FGFS 206

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
            V++A +  + +  G+++H  ++R G+D D    +AL DMY K G ++ A  IF+KM D 
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVVSW A+I      G       L  ++  SG+ PN FT + +L AC+   A +LG+Q+H
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G+M +   D   +    LV MY+K   +++++KVF+ M   DL+   +LI+G +  G  D
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 344 KALEYFELLLKSGTQPDHIVFVGVL--TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
           +AL  F  L K G   +      VL  TA   A    + +   H++  K G  + A    
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQV---HALAVKIGFIFDAHVVN 443

Query: 402 CIVD------LLARSGRFHE---AEDVISKMPM-------------------------KP 427
            ++D       L+ + R  E   + D+I+   M                         +P
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 428 DKFLWASLLGGC 439
           D F+ +SLL  C
Sbjct: 504 DPFVLSSLLNAC 515


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/387 (37%), Positives = 230/387 (59%), Gaps = 1/387 (0%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +R++   N +I+ + K G       +FDEM +R+  +WTA+ISG V+     ++L L+  
Sbjct: 91  QREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVE 150

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M N      N  T  S L A S +Q LR G +IHG + + G  SD  V SAL DMY KCG
Sbjct: 151 MTNGLVE-PNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCG 209

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           S+ +  QIF+     D VS T ++  + Q G  EE    F +++++G   ++   + VL 
Sbjct: 210 SMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLG 269

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
                 +  LG+Q+H  + +  +    F  + L++MYSKCG++E+S KVF+ MP  + VS
Sbjct: 270 VFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVS 329

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W S+IA +A++G   +AL+ ++ +   G +P  + F+ +L AC+H GLV+KG+++  S+ 
Sbjct: 330 WNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMT 389

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           E H LT   +HYAC+VD+L R+G  +EA+  I  +P+KPD  +W +LLG C IHG+ ++ 
Sbjct: 390 EVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMG 449

Query: 449 KRAAEALFEIEPENPATYVTMANIYAS 475
           K AAE L    PE P+ Y+ +ANIY+S
Sbjct: 450 KYAAEHLILSAPEKPSPYILLANIYSS 476



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 180/346 (52%), Gaps = 8/346 (2%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K G L  A  LFDEMP RD  SW  MISG+++          ++ MQ+      ++ T
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L+++LSA    +   + K +H   +  GF  +  V +AL   Y KCG  +   Q+FD+M+
Sbjct: 62  LTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEML 121

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
           +R+V++WTA+I    Q     +   LF E+    + PN+ T+   L AC+   A   G Q
Sbjct: 122 ERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQ 181

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +HG + ++G        SAL+ MYSKCG++ ++ ++F    + D VS T ++AG+AQNG 
Sbjct: 182 IHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGF 241

Query: 342 PDKALEYFELLLKSGTQPDHIV---FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            ++A+++F  +L++GT+ D  +    +GV  A T  GL     Q  HS+  K        
Sbjct: 242 EEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLG----QQIHSLVIKRSFGSNPF 297

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               ++++ ++ G   ++  V S+MP   +   W S++     HG+
Sbjct: 298 VGNGLINMYSKCGDLEDSTKVFSRMPCM-NSVSWNSMIAAFARHGD 342



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 163/358 (45%), Gaps = 35/358 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L+  +++ + +  P+   Y S +  C   +AL EG ++H  +   G +    + + L+DM
Sbjct: 145 LRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDM 204

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y+KCG++ D   +F+   + D  S   +++GF + G  E+A   F               
Sbjct: 205 YSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFF--------------- 249

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
                           +M++      SN   +S+VL    A   L LG++IH  +++  F
Sbjct: 250 ---------------VKMLEAGTEIDSN--MVSAVLGVFGADTSLGLGQQIHSLVIKRSF 292

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            S+  V + L +MY KCG + ++ ++F +M   + VSW +MI  + + G       L+ E
Sbjct: 293 GSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKE 352

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCG 309
           +   G+ P   TF  +L+AC+     E G +    MT +    P     + +V M  + G
Sbjct: 353 MRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAG 412

Query: 310 NVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFE-LLLKSGTQPDHIVFV 365
            +  +K    G+P +PD++ W +L+     +G P+      E L+L +  +P   + +
Sbjct: 413 LLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILL 470


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 259/478 (54%), Gaps = 38/478 (7%)

Query: 5   LCNQRRLKEALQILHQI--SHPSPSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFKPG 60
           L  QR  +EAL +  Q+  S  SP+ ++    F  C        G ++H H+  +G +P 
Sbjct: 31  LARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPE 90

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
            F+   L+ MY KC  I+ A                               R +FDE   
Sbjct: 91  PFVQTSLISMYCKCSTIASA-------------------------------RKVFDENHH 119

Query: 121 RDNFS--WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
             N +  + A+I+GY   ++  +A+ L+R M+  E    N  T+  ++   +    L  G
Sbjct: 120 SRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRK-EGVSVNAVTMLGLIPVCAGPIHLGFG 178

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
             +H   +R G D D  V + L  MY +CGS++ AR++FD M ++ +++W AMI  Y Q 
Sbjct: 179 TSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQN 238

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G       L+ ++  +GI P+  T  GVL++CA   A   G++V   +   G+    F  
Sbjct: 239 GLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLK 298

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +AL++MY++CGN+  ++ +F+GM   +++SWT++IAGY  +G  + A++ F+ ++ S   
Sbjct: 299 NALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL 358

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD   FV VL+AC+HAGL +KGL YF +++  +GL    +HY+C+VDLL R+GR  EA  
Sbjct: 359 PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARK 418

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +I  M ++PD  +W +LLG C+IH N++LA+ A E + E EP N   YV ++NI++ A
Sbjct: 419 LIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEA 476



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 167/331 (50%), Gaps = 5/331 (1%)

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           Q    SW A +    R     EAL+LY  M    +S  N FT      + +++     G 
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDS-PNAFTFPFAFKSCASLSLPLAGS 76

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK-MVDRDV-VSWTAMIGRYFQ 237
           ++HG++++TG + +  V ++L  MY KC +I  AR++FD+    R++ V + A+I  Y  
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
             R  +   LF ++ K G+  NA T  G++  CA       G  +H    R G D     
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            + L+ MY +CG+V+ ++K+F+GMP   L++W ++I+GYAQNG+    L+ +  +  +G 
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD +  VGVL++C H G    G +    I E  G  +       ++++ AR G   +A 
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRI-ELSGFGFNPFLKNALINMYARCGNLVKAR 315

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            +   M  K +   W +++ G  +HG  +LA
Sbjct: 316 AIFDGMTEK-NVISWTAIIAGYGMHGQGELA 345


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 252/446 (56%), Gaps = 32/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +S++  C    A+ +G+++H+H+  +  +   ++ N L+DMYAKC +             
Sbjct: 326 TSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEH------------- 372

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                             L +AR +FD + + D  S+ AMI GY +     EA+++++ M
Sbjct: 373 ------------------LTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRM 414

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           + F    S   T  S+L   S+   + L K+IHG I+++G   D    SAL D+Y KC  
Sbjct: 415 RFFSLRPS-LLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSL 473

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +N+A+ +F+ +  +D+V W +MI  + Q  + EE   LF++L+ SG+ PN FTF  ++  
Sbjct: 474 VNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTV 533

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
            +  A+   G+Q H ++ + G D     ++AL+ MY+KCG ++  + +F      D++ W
Sbjct: 534 ASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICW 593

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            S+I  YAQ+G  ++AL+ F L+ ++  +P+++ FVGVL+AC HAG V +GL +F+S+K 
Sbjct: 594 NSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKS 653

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            + +    +HYA +V+L  RSG+ H A++ I +MP+KP   +W SLL  C + GN ++ +
Sbjct: 654 NYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGR 713

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            AAE     +P +   YV ++NIYAS
Sbjct: 714 YAAEMALLADPTDSGPYVLLSNIYAS 739



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 208/415 (50%), Gaps = 34/415 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + +S+++ C Q++A+  G++VH           V++   L+++YAK G        
Sbjct: 118 PNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLG-------- 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   +++A  +F  +P R   +W  +I+GY +      AL
Sbjct: 170 -----------------------CMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVAL 206

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M   E    ++F L+S +SA SA+  L  G++IHGY  R+  ++D  V + L D+
Sbjct: 207 ELFDRM-GIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDL 265

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  ++ AR++FD M  R++VSWT MI  Y Q     E   +F  + ++G +P+ F  
Sbjct: 266 YCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFAC 325

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +LN+C   AA   G+Q+H ++ +   +   +  +AL+ MY+KC ++  ++ VF+ +  
Sbjct: 326 TSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAE 385

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D +S+ ++I GY++N    +A+  F+ +     +P  + FV +L   +    ++   Q 
Sbjct: 386 DDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQ- 444

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            H +  K G +      + ++D+ ++    ++A+ V + +  K D  +W S++ G
Sbjct: 445 IHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYK-DMVIWNSMIFG 498



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 176/336 (52%), Gaps = 7/336 (2%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+   N ++ G++  G L  AR+LFD MP R+  SW ++IS Y ++ +   A+ L+   Q
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
                V N+F L+SVL A +  + + LG+++HG  ++   D++  V +AL ++Y K G +
Sbjct: 112 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCM 171

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           +EA  +F  +  R  V+W  +I  Y Q G       LF  +   G+RP+ F  A  ++AC
Sbjct: 172 DEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSAC 231

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +     E G+Q+HGY  R   +  +   + L+ +Y KC  +  ++K+F+ M   +LVSWT
Sbjct: 232 SALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWT 291

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKE 389
           ++I+GY QN    +A+  F  + ++G QPD      +L +C     + +G Q + H IK 
Sbjct: 292 TMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKA 351

Query: 390 KHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKM 423
                  AD Y    ++D+ A+     EA  V   +
Sbjct: 352 D----LEADEYVKNALIDMYAKCEHLTEARAVFDAL 383



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 3/264 (1%)

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           RL   IH      G   D  + + L   Y   G + +AR +FD+M  R++VSW ++I  Y
Sbjct: 35  RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMY 94

Query: 236 FQEGRREEGFALFSELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
            Q GR +   +LF    K+    PN F  A VL AC    A  LG+QVHG   ++  D  
Sbjct: 95  TQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDAN 154

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            +  +AL+++Y+K G ++ +  VF+ +P    V+W ++I GYAQ G    ALE F+ +  
Sbjct: 155 VYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGI 214

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
            G +PD  V    ++AC+  G ++ G Q  H    +            ++DL  +  R  
Sbjct: 215 EGVRPDRFVLASAVSACSALGFLEGGRQ-IHGYAYRSATETDTSVINVLIDLYCKCSRLS 273

Query: 415 EAEDVISKMPMKPDKFLWASLLGG 438
            A  +   M  + +   W +++ G
Sbjct: 274 AARKLFDCMEYR-NLVSWTTMISG 296



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 6/181 (3%)

Query: 262 TFAGVLNACADHAAEELGK---QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           + A VL +C     + L +    +H   T  G     F  + L+  YS  G + +++ +F
Sbjct: 17  SLARVLLSCLPTGGDRLRRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLF 76

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLV 377
           + MP  +LVSW S+I+ Y Q+G  D A+  F    K+  + P+  +   VL ACT +  V
Sbjct: 77  DRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAV 136

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             G Q  H I  K  L         +++L A+ G   EA  V   +P++     W +++ 
Sbjct: 137 SLGEQ-VHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRT-PVTWNTVIT 194

Query: 438 G 438
           G
Sbjct: 195 G 195


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/524 (32%), Positives = 269/524 (51%), Gaps = 75/524 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+P  ++S++       AL+ G++VH+     G +  VF+ N L++MYAKCG + DA+++
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE-------MPQRDNFS----------- 125
           F+ M+ RD+ S+NT+++G        +A  LF E       M Q    +           
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 126 ---------------------WTAMISGYVRYNQPIEALDLYRMMQNFENSVS------- 157
                                 TA+   Y +  +  +AL+++ M     N VS       
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 158 ------------------------NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
                                   N+FT S++L A  +I    L  +IH  +++T +   
Sbjct: 379 CIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHI 434

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V +AL   Y K GS  +A  IF  +  +DVV+W+AM+  + Q G  E    LF+++  
Sbjct: 435 PSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAI 494

Query: 254 SGIRPNAFTFAGVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
            GI+PN FT + V++ACA   A  + G+Q H    +  Y      +SALV MYS+ GN++
Sbjct: 495 QGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNID 554

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
           +++ VF      DLVSW S+I+GYAQ+G   KA+E F  +  SG Q D + F+ V+  CT
Sbjct: 555 SAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCT 614

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           H GLV +G QYF S+   H +  T +HYAC+VDL +R+G+  E   +I  MP      +W
Sbjct: 615 HNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVW 674

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +LLG CR+H N++L K +A+ L  +EP + +TYV ++NIYA+A
Sbjct: 675 RTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAA 718



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 172/340 (50%), Gaps = 4/340 (1%)

Query: 111 ARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
           AR   DE+P+RD       ++  Y R     E LD + + +     + +  TLS VL A 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARR-GGVLVDSATLSCVLKAC 109

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
            ++    LG+++H   ++ G D  EV   ++L DMY KCGS+ E  ++F+ M  ++VV+W
Sbjct: 110 RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           T+++          E  ALF  +   GI PN FTFA VL+A A   A +LG++VH    +
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK 229

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G     F  ++L++MY+KCG VE++K VFN M   D+VSW +L+AG   N    +AL+ 
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F     +  +     +  V+  C +   +    Q  HS   KHG   T +    + D  +
Sbjct: 290 FHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYS 348

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           + G   +A ++ S      +   W +++ GC  +G++ LA
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 173/357 (48%), Gaps = 28/357 (7%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +V +  +++  + K GS+ +   +F+ MP+++  +WT++++G        E + L+  M+
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    N FT +SVLSAV++   L LG+ +H   ++ G  S   V ++L +MY KCG +
Sbjct: 194 A-EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLV 252

Query: 211 NEARQIFDKMVDRDVVSW-TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
            +A+ +F+ M  RD+VSW T M G    E    E   LF E   +  +    T+A V+  
Sbjct: 253 EDAKSVFNWMETRDMVSWNTLMAGLQLNECEL-EALQLFHESRATMGKMTQSTYATVIKL 311

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-GMPRPDLVS 328
           CA+     L +Q+H  + + G+       +AL   YSKCG + ++  +F+      ++VS
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-------THAGLVDKGL 381
           WT++I+G  QNG    A+  F  + +    P+   +  +L A         HA ++    
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNY 431

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS--KMPMKPDKFLWASLL 436
           Q+  S+                  LLA   +F   ED +S  KM  + D   W+++L
Sbjct: 432 QHIPSVGTA---------------LLASYSKFGSTEDALSIFKMIEQKDVVAWSAML 473


>gi|115479139|ref|NP_001063163.1| Os09g0413300 [Oryza sativa Japonica Group]
 gi|113631396|dbj|BAF25077.1| Os09g0413300 [Oryza sativa Japonica Group]
          Length = 810

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 260/468 (55%), Gaps = 37/468 (7%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R ++   ++ HQ   P+   Y+S+  F   N ++E G ++HS     GF  G+ + + L 
Sbjct: 355 RSVQLLRRMFHQGLRPNDKCYASV--FSSVN-SIEFGGQLHSSAIKEGFIHGILVGSALS 411

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY++C N+ D              SY                  +F+EM +RD  SWTA
Sbjct: 412 TMYSRCDNVQD--------------SYK-----------------VFEEMQERDGVSWTA 440

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           M++G+  +   +EA   +R M   +    +  +L+++LSA +  +CL  GKE+HG+ +R 
Sbjct: 441 MVAGFATHGHSVEAFLTFRNMI-LDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRV 499

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
            +     +      MY KC  +  AR+IFD    +D V W++MI  Y   G  EE  +LF
Sbjct: 500 -YGETTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLF 558

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             ++ + IR +++  + +L+ CAD A     K +HGY  + G       +S+LV +YS+ 
Sbjct: 559 QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRS 618

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GN+++S+KVF+ +  PDLV+WT++I GYAQ+G    AL  F+L+++ G +PD +V V VL
Sbjct: 619 GNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVL 678

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+  GLV++G  YF+S++  +G+     HY C+VDLL RSGR  EA+  +  MPMKPD
Sbjct: 679 SACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPD 738

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W++LL  CR+H +  L +     + E   ++  ++ T++NI A++
Sbjct: 739 LMVWSTLLAACRVHDDTVLGRFVENKIREGNYDS-GSFATLSNILANS 785



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 229/506 (45%), Gaps = 81/506 (16%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+   YS  +  C     L  G+ VH  +     +  VF+   L++MYAKCG++  A  
Sbjct: 167 EPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMR 226

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQ 138
            F  M  R+V S+ T I+GF +      A  L  EM +     + ++ T+++    + + 
Sbjct: 227 EFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSM 286

Query: 139 PIEALDLYRMMQNFE-------------------------------NSVSNKFTLSSVLS 167
             EA  ++ M+   E                                +VSN+   S+ +S
Sbjct: 287 VREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFIS 346

Query: 168 AVS------AIQCLR-------------------------LGKEIHGYIMRTGFDSDEVV 196
            VS      ++Q LR                          G ++H   ++ GF    +V
Sbjct: 347 GVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILV 406

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            SALS MY +C ++ ++ ++F++M +RD VSWTAM+  +   G   E F  F  +I  G 
Sbjct: 407 GSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGF 466

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  +   +L+AC        GK+VHG+  R+ Y   +F     + MYSKC  V+ +++
Sbjct: 467 KPDHVSLTAILSACNRPECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARR 525

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F+  PR D V W+S+I+GYA NG  ++A+  F+L++ +  + D  +   +L+ C     
Sbjct: 526 IFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCA---- 581

Query: 377 VDKGLQYF----HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
            D    ++    H    K G+       + +V + +RSG   ++  V  ++ + PD   W
Sbjct: 582 -DIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISV-PDLVAW 639

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEI 458
            +++ G   HG    + + A A+F++
Sbjct: 640 TTIIDGYAQHG----SSQNALAMFDL 661



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 8/348 (2%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           M+    K G L  A  +F +        W A +SG VR  +   A++++R M  + +   
Sbjct: 110 MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMV-WGSCEP 168

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N FT S  LSA +A + L +G+ +HG ++R   + D  V ++L +MY KCG +  A + F
Sbjct: 169 NSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREF 228

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            +M  R+VVSWT  I  + Q+        L  E++++G+  N +T   +L ACA  +   
Sbjct: 229 WRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVR 288

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS-WTSLIAGY 336
              Q+HG + +           AL+  Y+  G +E S+KVF         S W++ I+G 
Sbjct: 289 EASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGV 348

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           + + +  ++++    +   G +P+   +  V ++      ++ G Q  HS   K G  + 
Sbjct: 349 SNHSLL-RSVQLLRRMFHQGLRPNDKCYASVFSSVNS---IEFGGQ-LHSSAIKEGFIHG 403

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               + +  + +R     ++  V  +M  + D   W +++ G   HG+
Sbjct: 404 ILVGSALSTMYSRCDNVQDSYKVFEEMQER-DGVSWTAMVAGFATHGH 450



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 17/275 (6%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++++    + G   +  V + + D+  K G + +A ++F        V W A +    + 
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL--GKQVHGYMTRIGYDPYSF 296
           G       +F +++     PN+FT++G L+ACA  A EEL  G+ VHG + R   +   F
Sbjct: 149 GEGGLAVEMFRDMVWGSCEPNSFTYSGALSACA--AGEELSVGRAVHGLVLRRDPEYDVF 206

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             ++LV+MY+KCG++  + + F  MP  ++VSWT+ IAG+ Q+  P  A+     ++++G
Sbjct: 207 VGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNG 266

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARS----- 410
              +      +L AC    +V +  Q        HG+    + Y  C+V     S     
Sbjct: 267 VAINKYTATSILLACAQMSMVREASQI-------HGMVLKTEMYLDCVVKEALISTYTNF 319

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           G    +E V  +     ++ +W++ + G   H  L
Sbjct: 320 GFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLL 354



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 2/181 (1%)

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+ F +   L ACA   A  L +QV+    + G    ++  + +V + +K G + ++ +V
Sbjct: 67  PSQFAYGNALAACARAPAPALAEQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRV 126

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F        V W + ++G  +NG    A+E F  ++    +P+   + G L+AC     +
Sbjct: 127 FADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEEL 186

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             G +  H +  +    Y       +V++ A+ G    A     +MP++ +   W + + 
Sbjct: 187 SVG-RAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVR-NVVSWTTAIA 244

Query: 438 G 438
           G
Sbjct: 245 G 245


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 240/448 (53%), Gaps = 32/448 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           IY+S++        +  GK++H     +G      + N L+ MY KCG            
Sbjct: 216 IYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCG------------ 263

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                               L+ A   F+    +D+ +W+AMI+GY +     EAL+L+ 
Sbjct: 264 -------------------CLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 304

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M    N  S +FT   V++A S I  L  GK+IHGY ++ G++      +AL DMY KC
Sbjct: 305 NMHLNGNKPS-EFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKC 363

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           GS+ +AR+ FD + + D+V WT+MI  Y Q G  E    L+  +    I P+  T A VL
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVL 423

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC+  AA E GKQ+H    + G+       SAL  MY+KCG++E+   VF  MP  D++
Sbjct: 424 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIM 483

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           +W ++I+G +QNG   KALE FE L    T+PD++ FV VL+AC+H GLV++G  YF  +
Sbjct: 484 TWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMM 543

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            ++ G+    +HYAC+VD+L+R+G+ HE ++ I    +     LW  LLG CR + N +L
Sbjct: 544 LDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYEL 603

Query: 448 AKRAAEALFEIEPENPATYVTMANIYAS 475
              A E L E+  +  + Y+ +++IY +
Sbjct: 604 GAYAGEKLMELGSQESSAYILLSSIYTA 631



 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 212/386 (54%), Gaps = 7/386 (1%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           DV   +++I+ + K G +  AR +FD +P+R+  SW  +ISGY       EA +L+ +M+
Sbjct: 147 DVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMR 206

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E    +KF  +SVLSA++    +  GK+IH   ++ G  S   V +AL  MYGKCG +
Sbjct: 207 R-EEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCL 265

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           ++A + F+   D+D ++W+AMI  Y Q G   E   LF  +  +G +P+ FTF GV+NAC
Sbjct: 266 DDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINAC 325

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +D  A E GKQ+HGY  + GY+   +  +ALV MY+KCG++ +++K F+ +  PD+V WT
Sbjct: 326 SDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWT 385

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+I+GYAQNG  + AL  +  +      P  +    VL AC+    +++G Q  H+   K
Sbjct: 386 SMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQ-IHAQTIK 444

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +G +      + +  + A+ G   +   V  +MP + D   W +++ G   +G      +
Sbjct: 445 YGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSR-DIMTWNAMISGLSQNGE---GLK 500

Query: 451 AAEALFEIE-PENPATYVTMANIYAS 475
           A E   E+        YVT  N+ ++
Sbjct: 501 ALELFEELRHGTTKPDYVTFVNVLSA 526



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 201/420 (47%), Gaps = 42/420 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  L+  C + + L++GK +H+ L  +G    V+++N L+++YAKCG        
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCG-------- 59

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY-----VRYNQ 138
                                  S+ +A+ +F+ +  +D  SW  +I+GY     V Y+ 
Sbjct: 60  -----------------------SIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSF 96

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
            +E   L++ M+  EN++ N  T S V +A S+      G + H   ++T    D  V S
Sbjct: 97  VME---LFQRMRA-ENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGS 152

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           +L +MY K G + +AR++FD + +R+ VSW  +I  Y  E    E + LF  + +     
Sbjct: 153 SLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAH 212

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           + F +  VL+A         GKQ+H    + G    +   +ALV MY KCG ++++ K F
Sbjct: 213 DKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTF 272

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
                 D ++W+++I GYAQ G   +AL  F  +  +G +P    FVGV+ AC+  G ++
Sbjct: 273 ELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALE 332

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G Q  H    K G          +VD+ A+ G   +A      +  +PD  LW S++ G
Sbjct: 333 EGKQ-IHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLK-EPDIVLWTSMISG 390



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 152/309 (49%), Gaps = 37/309 (11%)

Query: 13  EALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EAL + + +    + PS   +  +I  C    ALEEGK++H +   +G++  ++    L+
Sbjct: 298 EALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALV 357

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKCG++ DA+  FD ++E D+  + +MISG+ + G  E                   
Sbjct: 358 DMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENET------------------ 399

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                        AL LY  MQ  E  + ++ T++SVL A S++  L  GK+IH   ++ 
Sbjct: 400 -------------ALTLYCRMQ-MERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKY 445

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF  +  + SALS MY KCGS+ +   +F +M  RD+++W AMI    Q G   +   LF
Sbjct: 446 GFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELF 505

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSK 307
            EL     +P+  TF  VL+AC+     E GK     M    G  P     + +V + S+
Sbjct: 506 EELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSR 565

Query: 308 CGNVENSKK 316
            G +  +K+
Sbjct: 566 AGKLHETKE 574


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 257/451 (56%), Gaps = 34/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS +    +    + G++VH      G +  +FI+N L+DMYAK G+ ++A  +
Sbjct: 141 PNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNV 200

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F ++  ++V S+N MI+ F        A+N F+                       + A+
Sbjct: 201 FYKLDAKNVVSWNAMIANF--------AQNRFE-----------------------LVAV 229

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L R MQ++   + N  T ++VL A + +  +R GKEIH   +  G   D  V +AL+DM
Sbjct: 230 GLVRQMQDY-GELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDM 288

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G +  AR +FD  + RD VS+  +I  + Q     E  +LFSE+   G++ +  +F
Sbjct: 289 YAKSGHLKLARNVFDTSL-RDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSF 347

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G L+ACA+  A + GK++HG++ R  +  + F A++L+  Y+KCG +  ++ +F+ M  
Sbjct: 348 MGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTN 407

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+ SW ++I GY   G  D A++ FE + K   + D + F+ VL+AC+H GL++KG +Y
Sbjct: 408 KDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKY 467

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +K + G+  T  HYAC+VDLL R+G   EA ++I  +P+ PD  +W +LLG CRI+G
Sbjct: 468 FDELKAR-GIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYG 526

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           NL+LA  AAE LFE++PE+   Y  ++N+YA
Sbjct: 527 NLELAAWAAEHLFELKPEHSGYYTLLSNMYA 557



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 201/432 (46%), Gaps = 48/432 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +++ C     + +G++VH  +   GF+  VF+ N LL  Y  C         
Sbjct: 39  PDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNC--------- 89

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY-VRYNQPIEA 142
                                 G L  A  +FDEMP++D  SW  MI  + V      +A
Sbjct: 90  ----------------------GGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDA 127

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           LD++R+M + E    N  T+SS L  +  ++  + G+E+HG  +R G +SD  + ++L D
Sbjct: 128 LDMFRLMID-EGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLID 186

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY K G   EA  +F K+  ++VVSW AMI  + Q         L  ++   G  PN+ T
Sbjct: 187 MYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVT 246

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  VL ACA       GK++H     +G     F ++AL  MY+K G+++ ++ VF+   
Sbjct: 247 FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL 306

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D VS+  LI G++Q     ++L  F  +   G + D++ F+G L+AC +   + +G  
Sbjct: 307 R-DEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQG-- 363

Query: 383 YFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                KE HG       +        ++D   + GR   A ++  +M  K D   W +++
Sbjct: 364 -----KEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNK-DVASWNTMI 417

Query: 437 GGCRIHGNLDLA 448
            G  + G LD A
Sbjct: 418 LGYGMLGELDTA 429



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 4/297 (1%)

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           F W  +I GY         L++Y  M        +  T   VL A +    +R G+E+HG
Sbjct: 8   FLWNTLIRGYSIAGVG-GGLEVYNQMVRI-GVRPDDHTFPFVLKACADAFEVRKGREVHG 65

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG-RRE 242
            +++ GF+SD  V + L   YG CG + +A ++FD+M ++D+VSW  MIG +   G    
Sbjct: 66  SVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYR 125

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   +F  +I  G++PN+ T +  L    +    + G++VHG   R+G +   F A++L+
Sbjct: 126 DALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLI 185

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MY+K G+   +  VF  +   ++VSW ++IA +AQN     A+     +   G  P+ +
Sbjct: 186 DMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSV 245

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
            F  VL AC   GLV  G +  H+     G  +       + D+ A+SG    A +V
Sbjct: 246 TFTNVLPACARMGLVRPG-KEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNV 301



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W  +I  Y   G    G  +++++++ G+RP+  TF  VL ACAD      G++VHG + 
Sbjct: 10  WNTLIRGYSIAGV-GGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK-AL 346
           ++G++   F  + L+  Y  CG + ++ +VF+ MP  DLVSW ++I  ++ NG   + AL
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG----LTYTADHYAC 402
           + F L++  G +P+ I     L            L++F + +E HG    +   +D +  
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVE-------LEFFKAGREVHGSSIRMGLESDIFIA 181

Query: 403 --IVDLLARSGRFHEAEDVISKMPMK 426
             ++D+ A+SG   EA +V  K+  K
Sbjct: 182 NSLIDMYAKSGHSTEASNVFYKLDAK 207


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/432 (35%), Positives = 240/432 (55%), Gaps = 32/432 (7%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK +H +   +GF   V IS  L DMY+KCG                             
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCG----------------------------- 297

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
             S+E AR +FD M Q+   SW +M+ GYV+  +P +A+ ++  M   E       T+  
Sbjct: 298 --SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE-EGIDPTGVTIME 354

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
            L A + +  L  GK +H ++ +    SD  V ++L  MY KC  ++ A  IF+ +  R 
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
            VSW AMI  Y Q GR  E    FSE+   G++P++FT   V+ A A+ +     K +HG
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
            + R   D   F  +ALV MYSKCG +  ++K+F+ +    +++W ++I GY  +G+   
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           AL+ F+ + K   +P+ I ++ V++AC+H+GLVD+GL++F S+K+ +GL  + DHY  +V
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMV 594

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           DLL R+GR  EA D I  MP+ P   ++ ++LG C+IH N+++ ++AA+ LFE+ P+   
Sbjct: 595 DLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGG 654

Query: 465 TYVTMANIYASA 476
            +V +ANIYAS 
Sbjct: 655 YHVLLANIYAST 666



 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 148/471 (31%), Positives = 230/471 (48%), Gaps = 53/471 (11%)

Query: 11  LKEALQILHQISHP--SPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L+ AL  L ++ +    P +Y  + L++ C  N  L+ GK++H  L ++ F   VF    
Sbjct: 128 LETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG 187

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +++MYAKC  I DA                                 +FD MP+RD  SW
Sbjct: 188 VVNMYAKCRQIDDAY-------------------------------KMFDRMPERDLVSW 216

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             +I+G+ +     +AL+L   MQ+ E    +  TL +VL A + +  L +GK IHGY +
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQD-EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAI 275

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R GF     + +AL+DMY KCGS+  AR IFD M  + VVSW +M+  Y Q G  E+  A
Sbjct: 276 RAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIA 335

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F ++++ GI P   T    L+ACAD    E GK VH ++ ++         ++L+ MYS
Sbjct: 336 VFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYS 395

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KC  V+ +  +FN +     VSW ++I GYAQNG   +AL  F  +   G +PD    V 
Sbjct: 396 KCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVS 455

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           V+ A      V +  ++ H +  +  L         +VD+ ++ G  H A  +     M 
Sbjct: 456 VIPALAELS-VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD---MI 511

Query: 427 PDKFL--WASLLGGCRIHGNLDLAKRAAEALFE------IEPENPATYVTM 469
            D+ +  W +++ G   HG      RAA  LF+      +EP N  TY+++
Sbjct: 512 SDRHVITWNAMIDGYGTHG----LGRAALDLFDKMKKGAVEP-NDITYLSV 557



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 215/437 (49%), Gaps = 47/437 (10%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H   HP+    + L++ C   + L +   +   +K+  +   +F +  L+ +++K G+I+
Sbjct: 46  HVYKHPA----AVLLELCTSMKELHQ--IIPLVIKNGLYNEHLFQTK-LVSLFSKYGSIN 98

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           +A  +F+ + ++    Y+TM+ G+ K  SLE A      M                RY+ 
Sbjct: 99  EAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM----------------RYD- 141

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
                D+  ++ NF          + +L        L+ GKEIHG ++   F ++    +
Sbjct: 142 -----DVKPVVYNF----------TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMT 186

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
            + +MY KC  I++A ++FD+M +RD+VSW  +I  + Q G  ++   L   +   G RP
Sbjct: 187 GVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRP 246

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           ++ T   VL A AD     +GK +HGY  R G+      ++AL  MYSKCG+VE ++ +F
Sbjct: 247 DSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIF 306

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           +GM +  +VSW S++ GY QNG P+KA+  FE +L+ G  P  +  +  L AC   G ++
Sbjct: 307 DGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLE 366

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G ++ H   ++  L         ++ + ++  R   A D+ + +  +     W +++ G
Sbjct: 367 RG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT-HVSWNAMILG 424

Query: 439 CRIHGNLDLAKRAAEAL 455
              +G      R +EAL
Sbjct: 425 YAQNG------RVSEAL 435



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 6/301 (1%)

Query: 179 KEIHGYI---MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           KE+H  I   ++ G  ++ +  + L  ++ K GSINEA ++F+ + D+    +  M+  Y
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            +    E   A    +    ++P  + F  +L  C D+A  + GK++HG +    +    
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           FA + +V+MY+KC  ++++ K+F+ MP  DLVSW ++IAG++QNG   KALE    +   
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDE 242

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD I  V VL A    GL+  G +  H    + G     +    + D+ ++ G    
Sbjct: 243 GQRPDSITLVTVLPAAADVGLLMVG-KSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  +   M  K     W S++ G   +G  + A    E + E E  +P     M  ++A 
Sbjct: 302 ARLIFDGMDQKT-VVSWNSMMDGYVQNGEPEKAIAVFEKMLE-EGIDPTGVTIMEALHAC 359

Query: 476 A 476
           A
Sbjct: 360 A 360



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 69/262 (26%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP--------- 59
           +R+  A  I + ++  +   ++++I    QN  + E     S +KS G KP         
Sbjct: 398 KRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVI 457

Query: 60  --------------------------GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC 93
                                      +F++  L+DMY+KCG I  A+ LFD + +R V 
Sbjct: 458 PALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVI 517

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
           ++N MI G+   G    A +LFD+M +           G V   +P              
Sbjct: 518 TWNAMIDGYGTHGLGRAALDLFDKMKK-----------GAV---EP-------------- 549

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLG-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
               N  T  SV+SA S    +  G +         G +     + A+ D+ G+ G I E
Sbjct: 550 ----NDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKE 605

Query: 213 ARQIFDKM-VDRDVVSWTAMIG 233
           A    + M +   +  + AM+G
Sbjct: 606 AWDFIENMPISPGITVYGAMLG 627


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 275/522 (52%), Gaps = 72/522 (13%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   + SS++  C     L+ GK++H+++  S  K  V   N L+D Y KCG +   + L
Sbjct: 241 PDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKAL 300

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM------------------------- 118
           FD +  +++ S+ TMI+G+ +     +A  L  EM                         
Sbjct: 301 FDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDAL 360

Query: 119 --------------PQRDNFSWTAMISGY---------------------VRYNQPIE-- 141
                          + DNF   A+I  Y                     V YN  IE  
Sbjct: 361 QHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGY 420

Query: 142 --------ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
                   AL++++ M+  ++   +  T  S+L   +A+ CL+L K+IHG I++ GF  D
Sbjct: 421 SRQGYLCGALEVFQEMR-LKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLD 479

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
           +   SAL D+Y KC  I +AR +F+   ++D+V W ++   Y  + + EE F L+S+L  
Sbjct: 480 KFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQL 539

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           S  RPN FTFA +  A +  A+   G+Q H  + ++G +   F  +ALV MY+KCG+VE 
Sbjct: 540 SRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEE 599

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           ++K+F+     D   W S+I+ YAQ+G  ++AL  FE ++ +   P+++ FV VL+AC+H
Sbjct: 600 AEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSH 659

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            G V+ GLQ+++S+  ++G+    +HYA +V LL R+GR  EA + I KM ++P   +W 
Sbjct: 660 VGFVEDGLQHYNSMA-RYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWR 718

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           SLL  CR+ GN++LAK AAE    I+P +  +YV ++NI+AS
Sbjct: 719 SLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFAS 760



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 222/456 (48%), Gaps = 46/456 (10%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           I +S+I+ C Q    E G +VHS++  SGF   V++   L+ +YAK G I          
Sbjct: 144 ILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEI---------- 193

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                                ++AR +FD +  +   +WTA+I+GY +  +   +L L+ 
Sbjct: 194 ---------------------DKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFN 232

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           +M    N + +K+ LSS+L+A S +  L+ GK+IH Y++R+    D   ++ L D Y KC
Sbjct: 233 LMME-SNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKC 291

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G +   + +FD++  ++++SWT MI  Y Q     E   L  E+ + G +P+ +  + VL
Sbjct: 292 GRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVL 351

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            +C    A + G+Q+H Y+ ++  +  +F  +AL+ MYSKC  ++++K+VF+ +    +V
Sbjct: 352 TSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVV 411

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            + ++I GY++ G    ALE F+ +      P  + FV +L        +    Q  H +
Sbjct: 412 YYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQ-IHGL 470

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             K+G +      + ++D+ ++     +A  V      K D  +W SL  G     NL L
Sbjct: 471 IIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNK-DIVVWNSLFSGY----NLQL 525

Query: 448 AKRAAEALF---EIEPENP-----ATYVTMANIYAS 475
               A  L+   ++  E P     A   T A+I AS
Sbjct: 526 KSEEAFKLYSDLQLSRERPNEFTFAALTTAASILAS 561



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 196/381 (51%), Gaps = 32/381 (8%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           N+++   +KVH  +   G +  VF+SN LL  Y K G++ DA TLFD+M  R++ S++++
Sbjct: 53  NKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSV 112

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           +S +T+ G  E+A   F E  QR                  ++ L              N
Sbjct: 113 VSMYTQLGYNEKALLYFLEF-QR----------------TCVDKL--------------N 141

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           ++ L+S++ A         G ++H Y++++GF  D  V ++L  +Y K G I++AR +FD
Sbjct: 142 EYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFD 201

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            +V +  V+WTA+I  Y + GR E    LF+ +++S + P+ +  + +LNAC+     + 
Sbjct: 202 GLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKG 261

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           GKQ+H Y+ R          + L+  Y+KCG V+  K +F+ +   +++SWT++IAGY Q
Sbjct: 262 GKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQ 321

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           N    +A+E    + + G +PD      VLT+C     +  G Q  HS   K  L +   
Sbjct: 322 NSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQ-IHSYVIKVCLEHDNF 380

Query: 399 HYACIVDLLARSGRFHEAEDV 419
               ++D+ ++     +A+ V
Sbjct: 381 VTNALIDMYSKCNALDDAKRV 401



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 146/278 (52%), Gaps = 3/278 (1%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           L+++L A  + + +   +++H  ++  G   D  + + L   Y K GS+ +A  +FDKM 
Sbjct: 43  LANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMP 102

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI-RPNAFTFAGVLNACADHAAEELGK 280
           +R++VSW++++  Y Q G  E+    F E  ++ + + N +  A ++ AC      E G 
Sbjct: 103 NRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGS 162

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           QVH Y+ + G+    +  ++LV +Y+K G ++ ++ VF+G+     V+WT++I GY ++G
Sbjct: 163 QVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSG 222

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             + +L+ F L+++S   PD  V   +L AC+  G +  G Q  H+   +         Y
Sbjct: 223 RSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQ-IHAYVLRSETKMDVSTY 281

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             ++D   + GR    + +  ++ +K +   W +++ G
Sbjct: 282 NVLIDFYTKCGRVKAGKALFDRLDVK-NIISWTTMIAG 318


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 257/477 (53%), Gaps = 39/477 (8%)

Query: 4   ILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK 58
           +LCN  R +EA ++   +          S Y +L++ C + +++   K+V+  + S+GF+
Sbjct: 98  VLCN--RFREAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFIISNGFE 155

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P  ++ N +L M+ KCG I DA                               R LFDEM
Sbjct: 156 PEKYMMNRILLMHVKCGMIIDA-------------------------------RRLFDEM 184

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P+R+ FS+ ++ISG+V +    EA +L+++M   E S     T + +L A + +  + +G
Sbjct: 185 PERNLFSYNSIISGFVNFGNYEEAFELFKLMWE-ELSDCETHTFAVMLRASAGLWSVYVG 243

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K++H   ++ G   +  V   L DMY KCG I +AR  F+ M ++  V+W  ++  Y   
Sbjct: 244 KQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALH 303

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  EE   L  E+  SG+  + FT + ++      A  EL KQ H  + R G++    A 
Sbjct: 304 GYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVAN 363

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +ALV  YSK G V+ ++ VF+ +PR +++SW +L+ GYA +G    A+  FE ++ +   
Sbjct: 364 TALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVA 423

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+H+ F+ VL+AC ++GL ++G + F S+ E HG+   A HYAC+++LL R G   EA  
Sbjct: 424 PNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIA 483

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            I + P+K    +WA+LL  CR+ GNL+L +  AE L+ + PE    YV + N+Y S
Sbjct: 484 FIRRAPLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLGNYVVLYNMYNS 540


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 140/382 (36%), Positives = 236/382 (61%), Gaps = 2/382 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           + ++S + + G  + A  LFDE+P +D  SW ++ISG+ R       L L   M+ FE  
Sbjct: 77  DQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMR-FEMG 135

Query: 156 VS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           +  N+ T+  V+SA + +  L +GK IHG  +++G   +  V ++L ++YGKCG +  A 
Sbjct: 136 LKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAAC 195

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            +F+ M  + +VSW +M+  +   G  E+G   F  + ++GI  +  T   +L AC +  
Sbjct: 196 CLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLG 255

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             +L + VHGY+   G D     A+AL+ +Y+K G + +S KVF GM  PD V+WT++++
Sbjct: 256 VRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLS 315

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            YA +G   +A+E+FEL+++ G  PDH+ F  +L+AC+H+GLV++G  YF  + E +G+ 
Sbjct: 316 SYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVE 375

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              +HY+C+VDLL RSG  ++A  +I  MPM+P+  +W +L+G CR+ GN++L K  AE 
Sbjct: 376 LRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAER 435

Query: 455 LFEIEPENPATYVTMANIYASA 476
           LF ++P +   Y+T++N+Y++A
Sbjct: 436 LFSLDPSDSRNYITLSNMYSAA 457



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 25/313 (7%)

Query: 147 RMMQNFENSVSNKF--------TLSSVLSAVSAIQCLRLGKEIHGYIMRT-----GFDSD 193
           R+  +F + +S  F         +S++++A+S    +   + +H  ++++     GF  D
Sbjct: 18  RLYNSFASQLSPTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGD 77

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA---LFSE 250
           ++V S     Y + G   +A ++FD++ D+D+VSW ++I  + +  R + G     LF  
Sbjct: 78  QLVSS-----YVELGCTKDALELFDELPDKDLVSWNSLISGFSR--RADLGICLGLLFRM 130

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
             + G++PN  T   V++ACA     ++GK +HG   + G        ++L+++Y KCG 
Sbjct: 131 RFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGC 190

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +E +  +F GM    LVSW S++A +   G+ +K + YF ++ ++G   D    V +L A
Sbjct: 191 LEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLA 250

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C + G V K  +  H      GL         ++DL A+ G   ++  V   M + PD  
Sbjct: 251 CENLG-VRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGM-INPDAV 308

Query: 431 LWASLLGGCRIHG 443
            W ++L    +HG
Sbjct: 309 AWTAMLSSYAMHG 321



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 146/332 (43%), Gaps = 34/332 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+      ++  C     L+ GK +H     SG    V + N L+++Y KCG +  A  L
Sbjct: 138 PNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCL 197

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M  + + S+N+M++     G  E+    F                            
Sbjct: 198 FEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYF---------------------------- 229

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
               +M       S++ T+ S+L A   +   +L + +HGYI+  G D +  + +AL D+
Sbjct: 230 ----IMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDL 285

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G+++++ ++F  M++ D V+WTAM+  Y   GR  E    F  +++ G+ P+  TF
Sbjct: 286 YAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTF 345

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L+AC+     E GK     M    G +      S +V +  + G++ ++ K+   MP
Sbjct: 346 THLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMP 405

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
             P+   W +LI      G  +   E  E L 
Sbjct: 406 MEPNSGVWGALIGACRVRGNIELGKEVAERLF 437


>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 515

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 228/365 (62%), Gaps = 1/365 (0%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S+++        ++ G+++H H+   GF   VF+ + L+DMYAK G + +A+ +FDEM 
Sbjct: 144 FSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMP 203

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +R+V  +NTMI+G  K G +E ++ LF  M +RDN SWT MI+G V+     EA+D +R 
Sbjct: 204 DRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQ 263

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+  +    +++T  SVL+A   +  LR GK++H +I+R+    +  V SAL DMY KC 
Sbjct: 264 MR-LDGIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCK 322

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  A  +F +M  ++VVSWTA++  Y Q G  EE   +F ++ ++GI P+ FT   V++
Sbjct: 323 ILRYAEAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGIEPDDFTLGSVIS 382

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CA+ A+ E G Q H      G       ++ALV +Y KCG++E+S ++FN M   D VS
Sbjct: 383 SCANLASLEEGAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVS 442

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           WT+LI+GYAQ G   + +E FE +L  G +PD + F+GVL AC+ AGLV +G Q+F S+ 
Sbjct: 443 WTALISGYAQFGKARETIELFERMLAHGLKPDAVTFIGVLLACSRAGLVARGQQFFDSML 502

Query: 389 EKHGL 393
           E++G+
Sbjct: 503 EEYGI 507



 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 142/438 (32%), Positives = 226/438 (51%), Gaps = 33/438 (7%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L++FC + R   + KK+H H+  +   P  F+ N L++ Y K GNI+ A+ LFD M +R+
Sbjct: 14  LLKFCCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRN 73

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
             S+NT++S ++K G L + + +F  MP RD  SW  ++SGY  Y    +A+  Y  M  
Sbjct: 74  SFSWNTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMMR 133

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                 N+ T S++L   S+ + + LG++IHG+IM+ GF     V S L DMY K G + 
Sbjct: 134 DGVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVY 193

Query: 212 EARQIFDKMVDRDVV-------------------------------SWTAMIGRYFQEGR 240
           EA+++FD+M DR+VV                               SWT MI    Q G 
Sbjct: 194 EAKKVFDEMPDRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNGL 253

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE    F ++   GI  + +TF  VL AC    A   GKQVH ++ R       F  SA
Sbjct: 254 EEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGSA 313

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY KC  +  ++ VF  M   ++VSWT+++ GY QNG  ++A++ F  + ++G +PD
Sbjct: 314 LVDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGIEPD 373

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
                 V+++C +   +++G Q FH      GL  +      +V L  + G   +++ + 
Sbjct: 374 DFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLF 432

Query: 421 SKMPMKPDKFLWASLLGG 438
           ++M  + D+  W +L+ G
Sbjct: 433 NEMNFR-DEVSWTALISG 449



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           A+ + C+ +R             P      S+I  C    +LEEG + H     SG    
Sbjct: 358 AVKVFCDMQR---------NGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISS 408

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           + +SN L+ +Y KCG+I D+  LF+EM  RD  S+  +ISG+ + G   +   LF+ M
Sbjct: 409 ITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALISGYAQFGKARETIELFERM 466


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 249/446 (55%), Gaps = 33/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           + L++ C +   +E G+++H  +   GF    F+++ L+D+Y KCG +            
Sbjct: 99  NGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLV------------ 146

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                              ++AR  FDE+  RD   W  M+S Y       EA   +++M
Sbjct: 147 -------------------KEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLM 187

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           Q  EN +++ FT SS+L++   +    LG++IHG  ++  FD D +V S L DMY K  +
Sbjct: 188 QE-ENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSEN 246

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I++AR+ FD M  R+VVSW  M+  Y + G   E   L   + +  +RP+  T A ++ +
Sbjct: 247 IDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRS 306

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+         QV+ Y+ + G+  +   A+AL++ YSK G++  + + FN +  PDLV+W
Sbjct: 307 CSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLEPDLVTW 366

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           TSLI  YA + +P  +++ FE +L  G  PD IVF+ VL+AC+HAGLV++GL YF  +K+
Sbjct: 367 TSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYFSLMKD 426

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            H L    +HY C++DLL R+G   EA ++++ M +        + +G C+IHG++ LAK
Sbjct: 427 YHILP-GLEHYTCLIDLLGRAGLLDEAFNILNSMSIGYSSDTLGAFIGACKIHGDVKLAK 485

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            AAE LFE+EP  P  Y  M++++AS
Sbjct: 486 WAAEKLFEMEPNKPVNYTLMSSVFAS 511



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 38/406 (9%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L EGK+VHSH+   GF   + + N +L++Y KC + +                       
Sbjct: 4   LREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFN----------------------- 40

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK-- 159
                    A  LFDEM  R+  +W  +I G V          +Y     F   + +K  
Sbjct: 41  --------YAHRLFDEMHVRNVVTWNTVICGLVDCRGSDYESSVYMGFCYFRKMLLDKVG 92

Query: 160 ---FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
               TL+ +L A   +  + +G+E+H +I++ GF  +  V SAL D+YGKCG + EAR+ 
Sbjct: 93  FDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLVKEARRA 152

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           FD++  RD+V W  M+  Y      EE    F  + +     + FTF+ +LN+C    + 
Sbjct: 153 FDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSC 212

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
            LG+Q+HG   ++ +D     AS LV MY+K  N+++++K F+GM   ++VSW +++ GY
Sbjct: 213 NLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGY 272

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
            + G   +A++    + +   +PD I    ++ +C+ A L    +   ++   K+G    
Sbjct: 273 GRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSCSSA-LTSCEIMQVNAYVLKNGFHAF 331

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
                 +++  ++ G    A    + + ++PD   W SL+G    H
Sbjct: 332 LSIANALINAYSKGGSIAMALQCFNTV-LEPDLVTWTSLIGAYAFH 376



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 32/293 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS++  C    +   G+++H       F   V +++ L+DMYAK  NI DA+  FD M 
Sbjct: 199 FSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMA 258

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            R+V S+NTM+ G+ + G   +A  L   M Q D               +P         
Sbjct: 259 ARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQED--------------LRP--------- 295

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                    ++ TL+S++ + S+        +++ Y+++ GF +   + +AL + Y K G
Sbjct: 296 ---------DEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGG 346

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SI  A Q F+ +++ D+V+WT++IG Y      +     F E++  G+ P+   F  VL+
Sbjct: 347 SIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLS 406

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           AC+       G      M      P     + L+ +  + G ++ +  + N M
Sbjct: 407 ACSHAGLVNEGLHYFSLMKDYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSM 459



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +K  + +  +   P     +S+I+ C       E  +V++++  +GF   + I+N L++ 
Sbjct: 282 MKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINA 341

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y+K G+I+ A   F+ + E D+                                +WT++I
Sbjct: 342 YSKGGSIAMALQCFNTVLEPDL-------------------------------VTWTSLI 370

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE----IHGYIM 186
             Y  ++ P  ++D +  M   +    ++     VLSA S    +  G      +  Y +
Sbjct: 371 GAYAFHSLPKNSIDTFEEMLA-DGVWPDQIVFLEVLSACSHAGLVNEGLHYFSLMKDYHI 429

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
             G +     ++ L D+ G+ G ++EA  I + M
Sbjct: 430 LPGLEH----YTCLIDLLGRAGLLDEAFNILNSM 459


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 260/468 (55%), Gaps = 33/468 (7%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +  +K  L+ L Q   P     +S++  C   R L   K +++++  +GF     + N L
Sbjct: 290 EESVKMFLENLDQF-KPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNIL 348

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +D+YAKCG+                     MI+          AR++F+ M  +D  SW 
Sbjct: 349 IDVYAKCGD---------------------MIT----------ARDVFNSMECKDTVSWN 377

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           ++ISGY++    +EA+ L++MM   E   ++  T   ++S  + +  L+ GK +H   ++
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQ-ADHITYLMLISLSTRLADLKFGKGLHSNGIK 436

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +G   D  V +AL DMY KCG + ++ +IF+ M   D V+W  +I    + G    G  +
Sbjct: 437 SGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQV 496

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
            +++ K+ + P+  TF   L  CA  AA+ LGK++H  + R GY+      +AL+ MYSK
Sbjct: 497 TTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSK 556

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG +E+S +VF  M R D+V+WT +I  Y   G  +KALE F  + KSG  PD +VF+ +
Sbjct: 557 CGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIAL 616

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           + AC+H+GLV+KGL  F  +K  + +    +HYAC+VDLL+RS +  +AE+ I  MP++P
Sbjct: 617 IYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEP 676

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           D  +WAS+L  CR  G+++ A+R +  + E+ P++P   +  +N YA+
Sbjct: 677 DASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAA 724



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 212/422 (50%), Gaps = 35/422 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + S+I+ C      E G  V+  +   GF+  +++ N L+DMY++ G +S A+ +
Sbjct: 104 PDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQV 163

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FDEM  RD+ S+N++ISG++  G  E+A  ++ E+      SW                 
Sbjct: 164 FDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRN----SWI---------------- 203

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                       V + FT+SSVL A + +  ++ G+ +HG+ +++G +S  VV + L  M
Sbjct: 204 ------------VPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAM 251

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K     +AR++FD+MV RD V++  MI  Y +    EE   +F E +    +P+  T 
Sbjct: 252 YLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTV 310

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL AC       L K ++ YM R G+   S   + L+ +Y+KCG++  ++ VFN M  
Sbjct: 311 TSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMEC 370

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D VSW S+I+GY Q+G   +A++ F++++    Q DHI ++ +++  T    +  G + 
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFG-KG 429

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            HS   K G+         ++D+ A+ G   ++  + + M    D   W +++  C   G
Sbjct: 430 LHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNTVISACVRFG 488

Query: 444 NL 445
           + 
Sbjct: 489 DF 490



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 222/480 (46%), Gaps = 15/480 (3%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      L  A Q+  ++       ++SLI     +   EE  +++  L++S   P  
Sbjct: 148 VDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDS 207

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY----NTMISGFTKGGSLEQARNLFDE 117
           F  + +L  +A    +   Q L     +  V S     N +++ + K      AR +FDE
Sbjct: 208 FTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDE 267

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  RD+ ++  MI GY++     E++ ++  ++N +    +  T++SVL A   ++ L L
Sbjct: 268 MVVRDSVTYNTMICGYLKLEMVEESVKMF--LENLDQFKPDILTVTSVLCACGHLRDLSL 325

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            K I+ Y++R GF  +  V + L D+Y KCG +  AR +F+ M  +D VSW ++I  Y Q
Sbjct: 326 AKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQ 385

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   E   LF  ++    + +  T+  +++     A  + GK +H    + G       
Sbjct: 386 SGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSV 445

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           ++AL+ MY+KCG V +S K+FN M   D V+W ++I+   + G     L+    + K+  
Sbjct: 446 SNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKV 505

Query: 358 QPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            PD   F+  L  C  A L  K L +  H    + G          ++++ ++ G    +
Sbjct: 506 VPDMATFLVTLPMC--ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESS 563

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYA 474
             V  +M  + D   W  ++    ++G     ++A E+  ++E     P + V +A IYA
Sbjct: 564 FRVFERMS-RRDVVTWTGMIYAYGMYGE---GEKALESFVDMEKSGIVPDSVVFIALIYA 619



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 215/435 (49%), Gaps = 41/435 (9%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ-ERDVCSYNTMIS 100
           L E +++H+ + S G     F S  L+D Y+     + + ++F  +   ++V  +N++I 
Sbjct: 20  LNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIR 79

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NK 159
            F+K G                   W              +AL+ Y  ++  E+ VS +K
Sbjct: 80  AFSKNG-------------------WFP------------KALEFYGKLR--ESKVSPDK 106

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
           +T  SV+ A + +    +G  ++  I+  GF+SD  V +AL DMY + G ++ ARQ+FD+
Sbjct: 107 YTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDE 166

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M  RD+VSW ++I  Y   G  EE   ++ EL  S I P++FT + VL A A+    + G
Sbjct: 167 MPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQG 226

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           + +HG+  + G +  S   + L+ MY K     ++++VF+ M   D V++ ++I GY + 
Sbjct: 227 QGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKL 286

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTAD 398
            M +++++ F   L    +PD +    VL AC H  L D  L +Y ++   + G    + 
Sbjct: 287 EMVEESVKMFLENLDQ-FKPDILTVTSVLCACGH--LRDLSLAKYIYNYMLRAGFVLEST 343

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
               ++D+ A+ G    A DV + M  K D   W S++ G    G+L  A +  + +  +
Sbjct: 344 VKNILIDVYAKCGDMITARDVFNSMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIM 402

Query: 459 EPE-NPATYVTMANI 472
           E + +  TY+ + ++
Sbjct: 403 EEQADHITYLMLISL 417


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 252/471 (53%), Gaps = 32/471 (6%)

Query: 6   CNQR-RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           CN    LK   Q+ H    P+   +SS +  C    AL +GK VH+ +     +  + + 
Sbjct: 326 CNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVG 385

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N L+ MY KC ++ DA+ +F  M   D+ SYN +I G+           L D       F
Sbjct: 386 NSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAV---------LEDGTKAMQVF 436

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW  M S  ++ N        Y  M N   S ++   L +             G+ +H Y
Sbjct: 437 SW--MRSAGIKPN--------YITMINIHGSFASSNDLHN------------YGRPLHAY 474

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I+RTGF SDE V ++L  MY KCG++  +  IF+ + ++++VSW A+I    Q G  EE 
Sbjct: 475 IIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEA 534

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF ++  +G + +    A  L++CA  A+ E G Q+HG   + G D  S+  +A + M
Sbjct: 535 LKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDM 594

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KCG ++   +V           W +LI+GYA+ G   +A E F+ ++ +G +PD++ F
Sbjct: 595 YGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTF 654

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           V +L+AC+HAGLVDKG+ Y++S+    G++    H  CIVDLL R GRF EAE  I +MP
Sbjct: 655 VALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMP 714

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           + P+  +W SLL   R H NL++ ++ A+ L E++P + + YV ++N+YA+
Sbjct: 715 VLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYAT 765



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 195/422 (46%), Gaps = 37/422 (8%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H    P  +   SL+  C  +     G  +HS    S     V + N L++MY+  G +S
Sbjct: 239 HHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLS 298

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           D                               A  LF  M +RD  SW  MIS YV+   
Sbjct: 299 D-------------------------------AEFLFWNMSRRDLISWNTMISSYVQNCN 327

Query: 139 PIEALDLYRMMQNFE-NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
             +AL    + Q F  N   N  T SS L A S+   L  GK +H  +++     + +V 
Sbjct: 328 STDALK--TLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVG 385

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           ++L  MYGKC S+ +A ++F  M   D+VS+  +IG Y       +   +FS +  +GI+
Sbjct: 386 NSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIK 445

Query: 258 PNAFTFAGVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           PN  T   +  + A  +     G+ +H Y+ R G+    + A++L+ MY+KCGN+E+S  
Sbjct: 446 PNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTN 505

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +FN +   ++VSW ++IA   Q G  ++AL+ F  +  +G + D +     L++C     
Sbjct: 506 IFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLAS 565

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +++G+Q  H +  K GL   +      +D+  + G+  E   V+    ++P +  W +L+
Sbjct: 566 LEEGMQ-LHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLI 623

Query: 437 GG 438
            G
Sbjct: 624 SG 625



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 202/450 (44%), Gaps = 41/450 (9%)

Query: 30  SSLIQFCRQ---NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           +SL+  C +   +  +  G  +H+    +G    V+I   LL +Y   G +SDAQ     
Sbjct: 45  ASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQ----- 99

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
                                      LF EMP+R+  SWTA++          EAL  Y
Sbjct: 100 --------------------------RLFWEMPERNVVSWTALMVALSSNGYLEEALRAY 133

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           R M+  +    N    ++V+S   +++    G ++   ++ +G  +   V ++L  M+G 
Sbjct: 134 RQMRR-DGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGN 192

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G +++A ++FD+M + D +SW AMI  Y  +G   + F +FS++   G+RP+A T   +
Sbjct: 193 LGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSL 252

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++ CA       G  +H    R   D      +ALV+MYS  G + +++ +F  M R DL
Sbjct: 253 MSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDL 312

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SW ++I+ Y QN     AL+    L  +   P+H+ F   L AC+  G +  G +  H+
Sbjct: 313 ISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDG-KMVHA 371

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           I  +  L         ++ +  +     +AE V   MP   D   +  L+GG  +   L+
Sbjct: 372 IVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DIVSYNVLIGGYAV---LE 427

Query: 447 LAKRAAEALFEIEPEN-PATYVTMANIYAS 475
              +A +    +        Y+TM NI+ S
Sbjct: 428 DGTKAMQVFSWMRSAGIKPNYITMINIHGS 457



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 167/361 (46%), Gaps = 36/361 (9%)

Query: 11  LKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L+EAL+   Q+       + + +++++  C        G +V S +  SG +  V ++N 
Sbjct: 126 LEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANS 185

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ M+   G + DA+ LFD M+E D  S+N MIS ++  G   +   +F +M        
Sbjct: 186 LITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHG---- 241

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                      +P                  +  TL S++S  ++      G  IH   +
Sbjct: 242 ----------LRP------------------DATTLCSLMSVCASSDHFSHGSGIHSLCL 273

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R+  DS   V +AL +MY   G +++A  +F  M  RD++SW  MI  Y Q     +   
Sbjct: 274 RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALK 333

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
              +L  +   PN  TF+  L AC+   A   GK VH  + ++         ++L+ MY 
Sbjct: 334 TLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYG 393

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KC ++E+++KVF  MP  D+VS+  LI GYA      KA++ F  +  +G +P++I  + 
Sbjct: 394 KCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMIN 453

Query: 367 V 367
           +
Sbjct: 454 I 454



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 12/325 (3%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS------A 171
           M  R   +W   +SG VR  +   A ++ R M+     +S  F L+S+++A         
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSG-FALASLVTACERRGRDEG 59

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
           I C   G  IH    R G   +  + +AL  +YG  G +++A+++F +M +R+VVSWTA+
Sbjct: 60  IAC---GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 116

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           +      G  EE    + ++ + G+  NA  FA V++ C     E  G QV   +   G 
Sbjct: 117 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGL 176

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
                 A++L+ M+   G V +++K+F+ M   D +SW ++I+ Y+  G+  K    F  
Sbjct: 177 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 236

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           +   G +PD      +++ C  +     G    HS+  +  L  +      +V++ + +G
Sbjct: 237 MRHHGLRPDATTLCSLMSVCASSDHFSHG-SGIHSLCLRSSLDSSVTVINALVNMYSAAG 295

Query: 412 RFHEAEDVISKMPMKPDKFLWASLL 436
           +  +AE +   M  + D   W +++
Sbjct: 296 KLSDAEFLFWNMS-RRDLISWNTMI 319


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 251/472 (53%), Gaps = 36/472 (7%)

Query: 8   QRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           QR   EA ++   +      +    ++S++        ++ GK++H     +G    + I
Sbjct: 190 QRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSI 249

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            N L+ MYAKCG                               SL+ +  +F+    +++
Sbjct: 250 LNALVTMYAKCG-------------------------------SLDDSLQVFEMSNDKNS 278

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W+AMI+GY +     +AL L+  M +F     ++FTL  VL+A S    +  GK++H 
Sbjct: 279 ITWSAMITGYAQSGDSHKALKLFSRM-HFAGINPSEFTLVGVLNACSDACAVEEGKQVHN 337

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y+++ GF+S   + +AL DMY K G   +AR+ F+ +   D+V WT+MI  Y Q G  E+
Sbjct: 338 YLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENED 397

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             +L+  +   GI PN  T A VL AC++ AA + G+Q+H    + G        SAL  
Sbjct: 398 ALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALST 457

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+KCGN+E    VF  MP  D++SW ++I+G +QNG   +ALE FE + +  T+PD + 
Sbjct: 458 MYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVT 517

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           FV VL+AC+H GLVD G  YF  + ++ GL    +HYAC+VD+L+R+G+ +EA++ I   
Sbjct: 518 FVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIEST 577

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +     LW  LLG CR + N +L   A E L E+  +  + YV ++ IY +
Sbjct: 578 TIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTA 629



 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 135/386 (34%), Positives = 218/386 (56%), Gaps = 7/386 (1%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           DV   +++++ + K G L +AR +FD MP+R+  +W  MISGY       EA +++ +M+
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E  V N+F  +SVLSA++  + +  GK+IH   ++TG      + +AL  MY KCGS+
Sbjct: 205 REEEDV-NEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSL 263

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           +++ Q+F+   D++ ++W+AMI  Y Q G   +   LFS +  +GI P+ FT  GVLNAC
Sbjct: 264 DDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNAC 323

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +D  A E GKQVH Y+ ++G++   +  +ALV MY+K G  E+++K FN + +PDLV WT
Sbjct: 324 SDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWT 383

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+IAGY QNG  + AL  +  +   G  P+ +    VL AC++    D+G Q  H+   K
Sbjct: 384 SMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQ-IHARTIK 442

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +GL       + +  + A+ G   E   V  +MP + D   W +++ G   +G     K 
Sbjct: 443 YGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPER-DIISWNAMISGLSQNG---YGKE 498

Query: 451 AAEALFEI-EPENPATYVTMANIYAS 475
           A E   E+ + +     VT  N+ ++
Sbjct: 499 ALELFEEMRQQDTKPDDVTFVNVLSA 524



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 214/420 (50%), Gaps = 39/420 (9%)

Query: 23  HP-SPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPGVFISNCLLDMYAKCGNISDA 80
           HP + S ++SL+QF  Q ++L++G+ +H+ + K +     ++++N L++ YAKC +    
Sbjct: 4   HPQNLSSFNSLVQFTHQ-KSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCH---- 58

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
                                      L +A+ +FD +  +D  SW  +I+GY +     
Sbjct: 59  ---------------------------LPKAKLVFDRIHNKDVISWNCLINGYSQQGPTG 91

Query: 141 EA--LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
            +  ++L++ M+  +N + N  T S + +A S +  +  G++ H   ++     D  V S
Sbjct: 92  SSFVMELFQRMRA-DNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGS 150

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           +L +MY K G + EAR++FD+M +R+ V+W  MI  Y  +    E F +F  + +     
Sbjct: 151 SLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDV 210

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N F F  VL+A A     + GKQ+H    + G   +    +ALV MY+KCG++++S +VF
Sbjct: 211 NEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVF 270

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
                 + ++W+++I GYAQ+G   KAL+ F  +  +G  P     VGVL AC+ A  V+
Sbjct: 271 EMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVE 330

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G Q  H+   K G          +VD+ A+SG   +A    + +  +PD  LW S++ G
Sbjct: 331 EGKQ-VHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ-QPDLVLWTSMIAG 388


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 264/478 (55%), Gaps = 16/478 (3%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           A ++   +   +  ++++L+    QN   E   +V   +  SG  P  F  +  L+  + 
Sbjct: 34  ARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSS 93

Query: 74  CGNISDAQT----LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
             +I+  +     +       D    N + S ++K GSL+ +   F E  ++D  SWT +
Sbjct: 94  LESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTI 153

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           IS      +    L L+  M  FEN   N FTL+SVLS  S IQ   LG ++H    + G
Sbjct: 154 ISACGDNGRAGMGLRLFIEML-FENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLG 212

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ-----------E 238
            +S+  + ++L  +Y KCG I+EA+ +F++M  +++++W AMI  + Q           +
Sbjct: 213 HESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQ 272

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
               E   ++ +L +SG +P+ FT + +L  C+  AA E G+Q+H    + G+       
Sbjct: 273 QTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVG 332

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +ALV MY KCG++E ++K F  M    L+SWTS+I  +A++G    AL+ FE +  +G +
Sbjct: 333 TALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFR 392

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+ I FVGVL AC+HAG+VD+ L+YF  +++++ +    DHY C+VD+  R GR  EA D
Sbjct: 393 PNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFD 452

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           VI +M ++P++F+W  L+ GCR HGN +L   AAE L +++P +  TYV + N+Y SA
Sbjct: 453 VIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISA 510



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 197/407 (48%), Gaps = 45/407 (11%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           VH+H+  +G     F+ + L+++YAKCG + +A+ +FD +  R+V  + T+++G+ +   
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
            E A  +F +M +  +F                                 + FTLS  L+
Sbjct: 62  PEVAVEVFGDMLESGSF--------------------------------PSNFTLSIALN 89

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           A S+++ + LGK+ H +I++     D  + +AL  +Y K GS++ + + F +  ++DV+S
Sbjct: 90  ACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVIS 149

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           WT +I      GR   G  LF E++   + PN FT   VL+ C+   + +LG QVH   T
Sbjct: 150 WTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLST 209

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ--------- 338
           ++G++      ++LV++Y KCG ++ +K +FN M   +L++W ++IAG+AQ         
Sbjct: 210 KLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNF 269

Query: 339 --NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
                  +AL  +  L +SG +PD      +LT C+    +++G Q  H+   K G    
Sbjct: 270 SAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQ-IHAQTIKSGFLSD 328

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                 +VD+  + G    A      M  +     W S++     HG
Sbjct: 329 VVVGTALVDMYDKCGSIERARKAFLDMSTRT-LISWTSMITSFARHG 374



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 178/350 (50%), Gaps = 31/350 (8%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L+  +++L +   P+    +S++  C   ++ + G +VHS     G +  + I+N L+ +
Sbjct: 167 LRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYL 226

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y KCG I +A+ LF+ M+ +++ ++N MI+G        QA +L      +DNFS  A  
Sbjct: 227 YLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHA------QAMDL-----AKDNFS--AQQ 273

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +G        EAL +Y +  N      + FTLSS+L+  S +  L  G++IH   +++GF
Sbjct: 274 TG-------TEALGMY-LKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGF 325

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            SD VV +AL DMY KCGSI  AR+ F  M  R ++SWT+MI  + + G+ +    LF +
Sbjct: 326 LSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFED 385

Query: 251 LIKSGIRPNAFTFAGVLNACA-----DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           +  +G RPN  TF GVL AC+     D A E        Y  +   D Y      LV M+
Sbjct: 386 MRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHY----GCLVDMF 441

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            + G ++ +  V   M   P+   W  LIAG   +G  +      E LLK
Sbjct: 442 VRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLK 491



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 140/270 (51%), Gaps = 6/270 (2%)

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H ++++TG   +  V S L ++Y KCG +  AR++FD +  R+VV WT ++  Y Q  +
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E    +F ++++SG  P+ FT +  LNAC+   +  LGKQ H ++ +      S   +A
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L  +YSK G++++S K F      D++SWT++I+    NG     L  F  +L    +P+
Sbjct: 122 LCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPN 181

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
                 VL+ C+     D G+Q  HS+  K G          +V L  + G   EA+++ 
Sbjct: 182 DFTLTSVLSLCSTIQSSDLGMQ-VHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 421 SKMPMKPDKFLWASLLGGCRIHGN-LDLAK 449
           ++M  K +   W +++ G   H   +DLAK
Sbjct: 241 NRMEYK-NLITWNAMIAG---HAQAMDLAK 266


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 262/502 (52%), Gaps = 43/502 (8%)

Query: 13   EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYA 72
            +A ++  QI  P+ S ++ +I+   Q     E  + ++ + S            LL   A
Sbjct: 748  KANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACA 807

Query: 73   KCGNIS----DAQTL---FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            +  N+S     A+ L   FD     D+   N +I G+     L  AR +FDEM +RD  S
Sbjct: 808  RISNVSCTTVHARVLKLGFDS----DLFVSNALIHGYAGFCELGFARKVFDEMSERDLVS 863

Query: 126  WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA----------IQCL 175
            W ++I GY R  +  E L ++  M+   +   +  T+  V+ A +           I+ +
Sbjct: 864  WNSLICGYGRCRRYSEVLVVFEEMR-MADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYI 922

Query: 176  RLGK-EIHGYIMRTGFD--------------------SDEVVWSALSDMYGKCGSINEAR 214
               K E+  Y+  T  D                     + V W+A+   YGK G++  AR
Sbjct: 923  EENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAAR 982

Query: 215  QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            ++FD M  RDV+SWT+MI  Y Q G+  +   LF E++ + ++P+  T A VL+ACA   
Sbjct: 983  KLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIG 1042

Query: 275  AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
            A ++G+ VH Y+ +   +   +  +AL+ MY KCG VE    VF  M + D VSWTS+IA
Sbjct: 1043 ALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIA 1102

Query: 335  GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            G A NG  D AL  F L+L+ G +P H  FVGVL AC HAG+VDKGL+YF S++  +GLT
Sbjct: 1103 GLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLT 1162

Query: 395  YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
                HY C+VDLL+RSG    A + I +MPM PD  +W  LL   ++HGNL LA+ A + 
Sbjct: 1163 PEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKK 1222

Query: 455  LFEIEPENPATYVTMANIYASA 476
            L E +P N   Y+  +N YA +
Sbjct: 1223 LLETDPSNSGNYILSSNTYAGS 1244



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 189/390 (48%), Gaps = 45/390 (11%)

Query: 95   YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN--- 151
            +N + S      ++ +A  LF ++P+     W  MI G+ + NQPIEA+  Y +M +   
Sbjct: 733  FNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQAL 792

Query: 152  FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            F N+++  F L +  + +S + C      +H  +++ GFDSD  V +AL   Y     + 
Sbjct: 793  FGNNLTYPFLLKAC-ARISNVSC----TTVHARVLKLGFDSDLFVSNALIHGYAGFCELG 847

Query: 212  EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
             AR++FD+M +RD+VSW ++I  Y +  R  E   +F E+  + ++ +A T   V+ AC 
Sbjct: 848  FARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACT 907

Query: 272  -----------DHAAEELGKQVHGYMTRIGYDPYS--------------------FAASA 300
                           EE   +V  Y+     D Y                      + +A
Sbjct: 908  VLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNA 967

Query: 301  LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
            ++  Y K GN+  ++K+F+ MP  D++SWTS+I+ Y+Q G   KA+  F+ ++ +  +PD
Sbjct: 968  MIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPD 1027

Query: 361  HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAED 418
             I    VL+AC H G +D G +  H    K+ +   AD Y    ++D+  + G   +   
Sbjct: 1028 EITVASVLSACAHIGALDVG-EAVHEYIRKYDV--NADIYVGNALIDMYCKCGAVEKGLS 1084

Query: 419  VISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            V  +M  K D   W S++ G  ++G+ D A
Sbjct: 1085 VFEEMG-KRDSVSWTSVIAGLAVNGSADSA 1113



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 125/274 (45%), Gaps = 18/274 (6%)

Query: 209  SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +I +A ++F ++    +  W  MI  + Q  +  E    ++ +    +  N  T+  +L 
Sbjct: 745  NILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLK 804

Query: 269  ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            ACA   +      VH  + ++G+D   F ++AL+H Y+    +  ++KVF+ M   DLVS
Sbjct: 805  ACA-RISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVS 863

Query: 329  WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT---HAGLVDKGLQYFH 385
            W SLI GY +     + L  FE +  +  + D +  V V+ ACT     G+VD  ++Y  
Sbjct: 864  WNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIE 923

Query: 386  SIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
              K         D Y    ++D+  R      A  V  +M  + +   W +++ G    G
Sbjct: 924  ENK------VEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDR-NMVSWNAMIMGYGKAG 976

Query: 444  NLDLAKRAAEALFEIEP-ENPATYVTMANIYASA 476
            NL     AA  LF+  P  +  ++ +M + Y+ A
Sbjct: 977  NL----VAARKLFDDMPHRDVISWTSMISSYSQA 1006


>gi|115482524|ref|NP_001064855.1| Os10g0477200 [Oryza sativa Japonica Group]
 gi|110289259|gb|AAP54276.2| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|110289260|gb|ABG66139.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639464|dbj|BAF26769.1| Os10g0477200 [Oryza sativa Japonica Group]
 gi|215695099|dbj|BAG90290.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 699

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 164/520 (31%), Positives = 285/520 (54%), Gaps = 55/520 (10%)

Query: 10  RLKEALQILHQISH---PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           R  EAL I  ++     P     +S++  C    AL  GK++HS++   G K  V+I + 
Sbjct: 25  RYDEALNIFCEMCESESPDAVTVASILPACTGLMALGIGKQLHSYVIRCGIKLNVYIGSS 84

Query: 67  LLDMYAKCGNISDAQTLFDEMQER-----------------------------------D 91
           L+ MY++CG    A+++F  ++E+                                   D
Sbjct: 85  LIGMYSECGEFGYARSVFAAIEEKNATVWNELIRSYINEERMNEAWEAFRLMKENGLQPD 144

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQPIEALDLYR 147
             +YN+ I+ + + G  EQA  L   M +     +  S  A+ISG   + +  +AL+ +R
Sbjct: 145 TITYNSFIAAYARAGQKEQAYTLLSNMVEIGLKPNVVSMNALISGLHHHGRHADALEAFR 204

Query: 148 MMQNFE-----------NSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            MQ              NS+  N  T++SVLS ++ ++  RLGKE+H Y  R+G  S+  
Sbjct: 205 YMQVSSDGEAKGWALPGNSIQPNGTTITSVLSLLTDLRLDRLGKEVHCYAFRSGLISNIF 264

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V S L D+YGK G +  A ++F ++ +++VV+W +++  Y Q  + E    LF E+IKS 
Sbjct: 265 VSSKLVDLYGKTGDVGTADKVFRRISNKNVVTWNSILASYRQNRKPEIALKLFHEMIKSN 324

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENS 314
           + PN  T    L +     A + G+++HGY+ +   D Y  A ASAL+ MY KCG +E++
Sbjct: 325 LLPNLVTLQIALLSSGMTMALQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDA 384

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + VF      D+ +W ++++ Y  + +P +  + F+ + +SG QPD + F+ +L+AC   
Sbjct: 385 RLVFECTDEKDIATWNAIMSAYLLHRIPGEVKKLFKYIEQSGIQPDPVTFIILLSACKQE 444

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G +++  +YF+S+++ +G+  T  HY C+VD++  +G   E+ ++I KM ++PD  LW+ 
Sbjct: 445 GSMEEARRYFYSMEDVYGIQPTLKHYTCMVDIMGMAGLLEESLELIQKMQLEPDGCLWSI 504

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           LL  C++H NL++ ++AA+ALFE+EP N + Y++++NIYA
Sbjct: 505 LLKACKLHSNLEIGEKAAKALFELEPNNTSNYMSLSNIYA 544



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/517 (20%), Positives = 192/517 (37%), Gaps = 129/517 (24%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---------------------- 89
           ++  G KPGV   NC++    +     +A  +F EM E                      
Sbjct: 1   MRLRGVKPGVNSWNCIISGCVQNARYDEALNIFCEMCESESPDAVTVASILPACTGLMAL 60

Query: 90  ---RDVCSY-------------NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
              + + SY             +++I  +++ G    AR++F  + +++   W  +I  Y
Sbjct: 61  GIGKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGYARSVFAAIEEKNATVWNELIRSY 120

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
           +   +  EA + +R+M+                                      G   D
Sbjct: 121 INEERMNEAWEAFRLMK------------------------------------ENGLQPD 144

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVD----RDVVSWTAMIGRYFQEGRREEGFALFS 249
            + +++    Y + G   +A  +   MV+     +VVS  A+I      GR  +    F 
Sbjct: 145 TITYNSFIAAYARAGQKEQAYTLLSNMVEIGLKPNVVSMNALISGLHHHGRHADALEAFR 204

Query: 250 -------------ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
                         L  + I+PN  T   VL+   D   + LGK+VH Y  R G     F
Sbjct: 205 YMQVSSDGEAKGWALPGNSIQPNGTTITSVLSLLTDLRLDRLGKEVHCYAFRSGLISNIF 264

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
            +S LV +Y K G+V  + KVF  +   ++V+W S++A Y QN  P+ AL+ F  ++KS 
Sbjct: 265 VSSKLVDLYGKTGDVGTADKVFRRISNKNVVTWNSILASYRQNRKPEIALKLFHEMIKSN 324

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
             P+ +     L +      +  G +    I++     Y     + ++D+  + G+  +A
Sbjct: 325 LLPNLVTLQIALLSSGMTMALQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDA 384

Query: 417 EDV----------------------------------ISKMPMKPDKFLWASLLGGCRIH 442
             V                                  I +  ++PD   +  LL  C+  
Sbjct: 385 RLVFECTDEKDIATWNAIMSAYLLHRIPGEVKKLFKYIEQSGIQPDPVTFIILLSACKQE 444

Query: 443 GNLDLAKR---AAEALFEIEPENPATYVTMANIYASA 476
           G+++ A+R   + E ++ I+P     Y  M +I   A
Sbjct: 445 GSMEEARRYFYSMEDVYGIQP-TLKHYTCMVDIMGMA 480


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 252/471 (53%), Gaps = 32/471 (6%)

Query: 6    CNQR-RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
            CN    LK   Q+ H    P+   +SS +  C    AL +GK VH+ +     +  + + 
Sbjct: 628  CNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVG 687

Query: 65   NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
            N L+ MY KC ++ DA+ +F  M   D+ SYN +I G+           L D       F
Sbjct: 688  NSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAV---------LEDGTKAMQVF 738

Query: 125  SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
            SW  M S  ++ N        Y  M N   S ++   L +             G+ +H Y
Sbjct: 739  SW--MRSAGIKPN--------YITMINIHGSFASSNDLHNY------------GRPLHAY 776

Query: 185  IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            I+RTGF SDE V ++L  MY KCG++  +  IF+ + ++++VSW A+I    Q G  EE 
Sbjct: 777  IIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEA 836

Query: 245  FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
              LF ++  +G + +    A  L++CA  A+ E G Q+HG   + G D  S+  +A + M
Sbjct: 837  LKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDM 896

Query: 305  YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
            Y KCG ++   +V           W +LI+GYA+ G   +A E F+ ++ +G +PD++ F
Sbjct: 897  YGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTF 956

Query: 365  VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
            V +L+AC+HAGLVDKG+ Y++S+    G++    H  CIVDLL R GRF EAE  I +MP
Sbjct: 957  VALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMP 1016

Query: 425  MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            + P+  +W SLL   R H NL++ ++ A+ L E++P + + YV ++N+YA+
Sbjct: 1017 VLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYAT 1067



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 195/422 (46%), Gaps = 37/422 (8%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H    P  +   SL+  C  +     G  +HS    S     V + N L++MY+  G +S
Sbjct: 541 HHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLS 600

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           D                               A  LF  M +RD  SW  MIS YV+   
Sbjct: 601 D-------------------------------AEFLFWNMSRRDLISWNTMISSYVQNCN 629

Query: 139 PIEALDLYRMMQNFE-NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
             +AL    + Q F  N   N  T SS L A S+   L  GK +H  +++     + +V 
Sbjct: 630 STDALK--TLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVG 687

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           ++L  MYGKC S+ +A ++F  M   D+VS+  +IG Y       +   +FS +  +GI+
Sbjct: 688 NSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIK 747

Query: 258 PNAFTFAGVLNACA-DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           PN  T   +  + A  +     G+ +H Y+ R G+    + A++L+ MY+KCGN+E+S  
Sbjct: 748 PNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTN 807

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +FN +   ++VSW ++IA   Q G  ++AL+ F  +  +G + D +     L++C     
Sbjct: 808 IFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLAS 867

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +++G+Q  H +  K GL   +      +D+  + G+  E   V+    ++P +  W +L+
Sbjct: 868 LEEGMQ-LHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLI 925

Query: 437 GG 438
            G
Sbjct: 926 SG 927



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 210/471 (44%), Gaps = 45/471 (9%)

Query: 13  EALQILHQISHPSPSI----YSSLIQFCRQ---NRALEEGKKVHSHLKSSGFKPGVFISN 65
           +A ++L  +  P   +     +SL+  C +   +  +  G  +H+    +G    V+I  
Sbjct: 326 KAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGT 385

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LL +Y   G +SDAQ                                LF EMP+R+  S
Sbjct: 386 ALLHLYGSRGIVSDAQ-------------------------------RLFWEMPERNVVS 414

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           WTA++          EAL  YR M+  +    N    ++V+S   +++    G ++   +
Sbjct: 415 WTALMVALSSNGYLEEALRAYRQMRR-DGVPCNANAFATVVSLCGSLENEVPGLQVASQV 473

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           + +G  +   V ++L  M+G  G +++A ++FD+M + D +SW AMI  Y  +G   + F
Sbjct: 474 IVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCF 533

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            +FS++   G+RP+A T   +++ CA       G  +H    R   D      +ALV+MY
Sbjct: 534 LVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMY 593

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           S  G + +++ +F  M R DL+SW ++I+ Y QN     AL+    L  +   P+H+ F 
Sbjct: 594 SAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFS 653

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
             L AC+  G +  G +  H+I  +  L         ++ +  +     +AE V   MP 
Sbjct: 654 SALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT 712

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
             D   +  L+GG  +   L+   +A +    +        Y+TM NI+ S
Sbjct: 713 H-DIVSYNVLIGGYAV---LEDGTKAMQVFSWMRSAGIKPNYITMINIHGS 759



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 167/361 (46%), Gaps = 36/361 (9%)

Query: 11  LKEALQILHQISHP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L+EAL+   Q+       + + +++++  C        G +V S +  SG +  V ++N 
Sbjct: 428 LEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANS 487

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+ M+   G + DA+ LFD M+E D  S+N MIS ++  G   +   +F +M        
Sbjct: 488 LITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHG---- 543

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                      +P                  +  TL S++S  ++      G  IH   +
Sbjct: 544 ----------LRP------------------DATTLCSLMSVCASSDHFSHGSGIHSLCL 575

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R+  DS   V +AL +MY   G +++A  +F  M  RD++SW  MI  Y Q     +   
Sbjct: 576 RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALK 635

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
              +L  +   PN  TF+  L AC+   A   GK VH  + ++         ++L+ MY 
Sbjct: 636 TLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYG 695

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KC ++E+++KVF  MP  D+VS+  LI GYA      KA++ F  +  +G +P++I  + 
Sbjct: 696 KCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMIN 755

Query: 367 V 367
           +
Sbjct: 756 I 756



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 158/330 (47%), Gaps = 12/330 (3%)

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS-- 170
           +LFDEM  R   +W   +SG VR     +A ++ R M+     +S  F L+S+++A    
Sbjct: 298 HLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSG-FALASLVTACERR 356

Query: 171 ----AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
                I C   G  IH    R G   +  + +AL  +YG  G +++A+++F +M +R+VV
Sbjct: 357 GRDEGIAC---GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVV 413

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SWTA++      G  EE    + ++ + G+  NA  FA V++ C     E  G QV   +
Sbjct: 414 SWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQV 473

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
              G       A++L+ M+   G V +++K+F+ M   D +SW ++I+ Y+  G+  K  
Sbjct: 474 IVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCF 533

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             F  +   G +PD      +++ C  +     G    HS+  +  L  +      +V++
Sbjct: 534 LVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHG-SGIHSLCLRSSLDSSVTVINALVNM 592

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            + +G+  +AE +   M  + D   W +++
Sbjct: 593 YSAAGKLSDAEFLFWNMSRR-DLISWNTMI 621



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            +FD+M DR   +W   +    + GR    F +   + + G+  + F  A ++ AC    
Sbjct: 75  HLFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRG 134

Query: 275 AEE---LGKQVHGYMTRIGYDPYSFAASALVHM 304
            +E    G  +H    R G     +   AL+H+
Sbjct: 135 RDEGIACGAAIHALTHRAGLMGNVYIGRALLHL 167


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 260/455 (57%), Gaps = 8/455 (1%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ-TLFDEM 87
           ++++I     N   EEG + +  +++ G  P  F   C +        I      LF   
Sbjct: 107 FNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLLFKFG 166

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            E DV   + +++ + K G +E A+  F+E+P RD   W AM++GY +  Q    L+ +R
Sbjct: 167 LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 226

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M N E+ V ++FT++  LS  + +  L  G+ IHG+ M+ G+DS   V ++L DMYGKC
Sbjct: 227 RM-NDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKC 285

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
             I +A +IF+ M ++D+ SW +++  + Q G  +    L   ++ +GI+P+  T   VL
Sbjct: 286 KCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVL 345

Query: 268 NACADHAAEELGKQVHGYM--TRIGYDPYS----FAASALVHMYSKCGNVENSKKVFNGM 321
            AC+  AA   G+++HGYM  + +G D          +A++ MY+KCG++ ++  VF  M
Sbjct: 346 PACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERM 405

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+ SW  +I GY  +G  ++ALE F  + +   +PD + FVGVL+AC+HAG V +G 
Sbjct: 406 SNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGR 465

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
            +   +K K+ +  T +HY C++D+L R+G+  EA ++   MP++ +  +W +LL  CR+
Sbjct: 466 NFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRL 525

Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           H +  LA+ AA+ +FE+EPE+  +YV M+N+Y + 
Sbjct: 526 HKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAV 560



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 174/359 (48%), Gaps = 20/359 (5%)

Query: 97  TMISGFTK------GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           T++S F +        +L+   N  D   + + F++ A+ISG++    P E  + Y+ M+
Sbjct: 74  TLVSSFVQLEIELPSNTLKAGEN--DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMR 131

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           N E  + +KFT    + A   +  L + K+IHG + + G + D  + SAL + Y K G +
Sbjct: 132 N-EGVMPDKFTFPCAIKA--CLDVLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLM 187

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             A+  F+++  RDVV W AM+  Y Q G+ E     F  +    + P+ FT  G L+  
Sbjct: 188 EHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVF 247

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A       G+ +HG+  ++GYD     +++L+ MY KC  +E++ ++F  M   D+ SW 
Sbjct: 248 AVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWN 307

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+++ + Q G  D  L   + +L +G QPD +    VL AC+H   +  G +  H     
Sbjct: 308 SIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGRE-IHGYMIV 366

Query: 391 HGLTYTADHY------ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            GL               ++D+ A+ G   +A  V  +M  K D   W  ++ G  +HG
Sbjct: 367 SGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK-DVASWNIMIMGYGMHG 424


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 258/465 (55%), Gaps = 44/465 (9%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++EA ++  ++   +   ++ +I    +   +++ KK+   +     K  V ++N ++  
Sbjct: 130 VEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPE---KDVVVVTN-MIGG 185

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y + G + +A+ LFDEM+ R+V ++ TM+SG+ K G ++ AR LF+ MP+R+  SWTAM+
Sbjct: 186 YCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAML 245

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
            GY +  +  EA +L+  M        N+  L                            
Sbjct: 246 MGYTQSGRMKEAFELFEAMPVKWIVACNEMILQ--------------------------- 278

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
                        +G  G ++ AR +F+ M +RD  +W AMI  + ++G   E   LF+ 
Sbjct: 279 -------------FGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFAR 325

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           + + G+  N  +   VL+ CA  A+ + G+QVH  + R  +D   + AS L+ MY KCG+
Sbjct: 326 MQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGD 385

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           +  +K +FN     D+V W S+I GY+Q+G+ ++AL  F  +  SG QPD + F+GVL+A
Sbjct: 386 LVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSA 445

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+++G V +G + F ++K  + +    +HYAC+VDLL R+GR  EA +++ KMPM+PD  
Sbjct: 446 CSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAI 505

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +W +LLG CR H  LDLA+ A E L ++EP+N   YV ++++YA+
Sbjct: 506 VWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYAT 550



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 172/381 (45%), Gaps = 23/381 (6%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++  Y +     DA  LFD+M +R+  S+N MISG+ K G +  AR +FD MP+R+  
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVV 115

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWT+M+ GYV+     EA  L+  M    N VS    +  +L         +L   I   
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMPR-RNVVSWTVMIGGLLKESRIDDAKKLFDMIP-- 172

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
                 + D VV + +   Y + G ++EAR++FD+M  R+V +WT M+  Y + GR +  
Sbjct: 173 ------EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVA 226

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF  + +     N  ++  +L         +   ++   M       +  A + ++  
Sbjct: 227 RKLFEVMPER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPV----KWIVACNEMILQ 278

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           +   G +  ++ +F GM   D  +W ++I  + + G+  +AL  F  + + G   +    
Sbjct: 279 FGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSM 338

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISK 422
           + VL+ C     +D G Q    +       +  D Y  + ++ +  + G    A+ + ++
Sbjct: 339 ISVLSVCASLASLDHGRQVHARLVRSE---FDQDLYVASVLITMYVKCGDLVRAKGIFNR 395

Query: 423 MPMKPDKFLWASLLGGCRIHG 443
              K D  +W S++ G   HG
Sbjct: 396 FLFK-DVVMWNSMITGYSQHG 415



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 156/362 (43%), Gaps = 73/362 (20%)

Query: 71  YAKCGNISDAQTLFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           Y + G+I +A+ +FD   + +R + S+N M+S + +      A  LFD+MPQR+  S+  
Sbjct: 29  YGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNG 88

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MISGYV+     +A  ++ +M                                       
Sbjct: 89  MISGYVKNGMVADARKVFDVMP-------------------------------------- 110

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
             + + V W+++   Y + G + EA ++F +M  R+VVSWT MIG   +E R ++   LF
Sbjct: 111 --ERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLF 168

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             + +  +        G         A EL  ++             F  + +V  Y+K 
Sbjct: 169 DMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV--------FTWTTMVSGYAKN 220

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G V+ ++K+F  MP  + VSWT+++ GY Q+G   +A E FE +      P     V  +
Sbjct: 221 GRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAM------P-----VKWI 269

Query: 369 TACTH-------AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
            AC         AG + +    F  +KE+   T+ A     ++ +  R G   EA  + +
Sbjct: 270 VACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNA-----MIKVFERKGLDLEALGLFA 324

Query: 422 KM 423
           +M
Sbjct: 325 RM 326


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 250/450 (55%), Gaps = 35/450 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  +++ C        G+ VH  +  +GF   +F+   L+DMYAKCG I DA        
Sbjct: 135 YPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH------- 187

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                    +FD M  RD   WTAMI+ Y +  +P++AL L+R 
Sbjct: 188 ------------------------EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRK 223

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           MQ  E  + ++ T  SV SAV  +   R+   +HGY +  GF  D  V +++  MY KCG
Sbjct: 224 MQE-EGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCG 282

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           ++  AR +FD+M +R+ +SW +M+  Y Q GR  +  +LF+++  S   PN  T   +++
Sbjct: 283 NVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVS 342

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG--MPRPDL 326
           AC+   ++ LG+++H ++     D  +   +A++ MY KCG+++ + ++FN   +   D+
Sbjct: 343 ACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDV 402

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
            SW  LI+GY  +G   +ALE F  +   G +P+ I F  +L+AC+HAGL+D+G + F  
Sbjct: 403 SSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFAD 462

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +  K  +     HYAC+VD+L R+G  +EA  +I K+P +P   +W +LL  CRIHGN +
Sbjct: 463 MT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTE 521

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           L + AA  LF++EPE+   YV M+NIYA++
Sbjct: 522 LGEIAANNLFQLEPEHTGYYVLMSNIYAAS 551



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 213/455 (46%), Gaps = 43/455 (9%)

Query: 18  LHQISHPS-----PSI---YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV--FISNCL 67
           LH +SH       PS+   Y  L+Q C    +L   K +HS L + GF      F++  L
Sbjct: 9   LHHLSHTHKVLALPSLHHFYDHLLQCCT---SLTTLKLIHSSLSTRGFLLHTPHFLAR-L 64

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + +Y+K G++  A+TLFD                        QA N         +F   
Sbjct: 65  IILYSKLGDLHSARTLFDHRHHHHH--------------GHTQAPN---------SFLCN 101

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            M+  Y    +  EA+DLY  MQ     V+N FT   VL   ++      G+ +HG ++R
Sbjct: 102 TMLRAYANAGRSYEAIDLYIYMQRMGVGVNN-FTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           TGF SD  V +AL DMY KCG I +A ++FD+M+ RDVV WTAMI  Y Q  R  +   L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F ++ + G   +  T   V +A        +   VHGY    G+       +++V MY+K
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAK 280

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CGNVE ++ VF+ M   + +SW S+++GY QNG P  AL  F  +  S   P+ +  + +
Sbjct: 281 CGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIM 340

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM-K 426
           ++AC++ G    G +  H+      +         I+D+  + G    A ++ +   + +
Sbjct: 341 VSACSYLGSKHLG-RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGE 399

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
            D   W  L+ G  +HG+    K A E    ++ E
Sbjct: 400 RDVSSWNVLISGYGVHGH---GKEALELFSRMQVE 431



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 41/231 (17%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  +AL + +Q+      P+P     ++  C    +   G+K+H+ + SS       + N
Sbjct: 314 RPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN 373

Query: 66  CLLDMYAKCGNISDAQTLFD--EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            ++DMY KCG++  A  +F+  E+ ERDV S+N +ISG+   G                 
Sbjct: 374 AIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHG----------------- 416

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
                            EAL+L+  MQ  E    N  T +S+LSA S    +  G++   
Sbjct: 417 --------------HGKEALELFSRMQ-VEGVEPNDITFTSILSACSHAGLIDEGRKCFA 461

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR--DVVSWTAMI 232
            + +     +   ++ + DM G+ G +NEA ++  K+  R  D V W A++
Sbjct: 462 DMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV-WGALL 511



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 24/183 (13%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL++  ++      P+   ++S++  C     ++EG+K  + +     +P +    C+
Sbjct: 419 KEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACM 478

Query: 68  LDMYAKCGNISDAQTLFDEMQER------DVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           +DM  + G +++A  L  ++  R              I G T+ G +  A NLF   P+ 
Sbjct: 479 VDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEI-AANNLFQLEPEH 537

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
             + +  M + Y   N+  E +++ R  QN +         S  L   +A   +  G E+
Sbjct: 538 TGY-YVLMSNIYAASNKWKE-VEMVR--QNMK---------SRGLKKPAAFSVIEFGTEV 584

Query: 182 HGY 184
           HG+
Sbjct: 585 HGF 587


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 247/486 (50%), Gaps = 63/486 (12%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P    Y  L + C +   +  G ++  H+   GF   +F+SN ++ +   CG+     
Sbjct: 103 TKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGD----- 157

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                     L+ AR +FD+   RD  SW +MI+GYVR     E
Sbjct: 158 --------------------------LDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYE 191

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           AL+ YR M+  E    ++ T+  V+S+ + ++ L LG+E H YI   G      + +AL 
Sbjct: 192 ALNFYREMK-VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALM 250

Query: 202 DMYGKCGSINEARQIFDKMV-------------------------------DRDVVSWTA 230
           DMY KCG++  AR++FD M                                D+DVV W A
Sbjct: 251 DMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNA 310

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MIG Y    R +E  ALF+E+    I P+  T    L+AC+   A ++G  +H Y+ +  
Sbjct: 311 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 370

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                   +AL+ MY+KCG +  + +VF  +P  + ++WT++I+G A +G    A+ YF 
Sbjct: 371 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 430

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            ++ +   PD + F+G+L+AC H GLV++G +YF  +  K  L+    HY+C+VDLL R+
Sbjct: 431 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRA 490

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   EAE++I  MP++ D  +W +L   CRIHGN+ + +RAA  L +++P +   YV +A
Sbjct: 491 GLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLA 550

Query: 471 NIYASA 476
           N+Y  A
Sbjct: 551 NMYGEA 556



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 204/417 (48%), Gaps = 39/417 (9%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEM------QERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           N  L +  KC +IS  + +  +M      ++    S        ++   L+   N+    
Sbjct: 7   NPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNT 66

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
              + FSW   I G++    P EA+ LY+ +   + +  + +T   +  A + +  +R+G
Sbjct: 67  RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG 126

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
            EI G+++  GFDSD  V +A+  +   CG ++ AR++FDK   RD+VSW +MI  Y + 
Sbjct: 127 SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR 186

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G   E    + E+   GI+P+  T  GV+++CA     +LG++ H Y+   G       A
Sbjct: 187 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 246

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG-----------MPDK--- 344
           +AL+ MY KCGN+E+++K+F+ M    +VSWT+++ GYAQ+G           MPDK   
Sbjct: 247 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVV 306

Query: 345 -----------------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
                            AL  F  +      PD +  V  L+AC+  G +D G+   H I
Sbjct: 307 PWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI 366

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            EKH L+        ++D+ A+ G+  +A  V  ++P + +   W +++ G  +HGN
Sbjct: 367 -EKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGN 421



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 19/203 (9%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R KEAL + +++     +P      S +  C Q  AL+ G  +H +++       V +  
Sbjct: 320 RGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGT 379

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---- 121
            L+DMYAKCG I+ A  +F E+  R+  ++  +ISG    G+   A   F EM       
Sbjct: 380 ALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMP 439

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLG- 178
           D  ++  ++S         E    +  M       S+KF LS  L   S +  L  R G 
Sbjct: 440 DEVTFLGLLSACCHGGLVEEGRKYFSQM-------SSKFNLSPKLKHYSCMVDLLGRAGL 492

Query: 179 -KEIHGYIMRTGFDSDEVVWSAL 200
            +E    I     ++D VVW AL
Sbjct: 493 LEEAEELIKSMPIEADAVVWGAL 515


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 274/482 (56%), Gaps = 16/482 (3%)

Query: 1   AIDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           AI     Q + KEAL +  Q+      PS    SS ++   +      G  +H+     G
Sbjct: 95  AIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYG 154

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
           F   V++   L+D+Y+K G+++ AQ +FDE+ E++V S+N+++SG  K G+L +A+ +FD
Sbjct: 155 FSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFD 214

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           ++ ++D  SW +MISGY +      A  L++ M   +N  S    +S  ++        R
Sbjct: 215 QISKKDVISWNSMISGYAKIGDMDRACVLFQQMPE-KNYSSWNALISGYVNCGDIKSAWR 273

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
               +         + + V W  +   Y KCG ++ A ++FD++  +D++++ AMI  + 
Sbjct: 274 FFDAMP--------ERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFA 325

Query: 237 QEGRREEGFALFSELIKS--GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           Q  +  +   LFSE++K+   I+P+  T A V++AC+          +  Y+  +G +  
Sbjct: 326 QNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEID 385

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
               +AL+ +Y+KCG+V+ + ++F+G+ + D+V+++++I+G   NG    A++ F++++ 
Sbjct: 386 DQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVD 445

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           +   P+   F G+LTAC HAGLV +G ++F S+K+ HGL  + DHYA +VDLL R+GR  
Sbjct: 446 AQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKD-HGLVPSTDHYAIMVDLLGRAGRLQ 504

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +A ++I  MPM+P   +W +LL  C +H N++L + AA+  F +E    A Y  +ANIY+
Sbjct: 505 DAYELIKSMPMQPHSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYS 564

Query: 475 SA 476
           SA
Sbjct: 565 SA 566



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 180/379 (47%), Gaps = 31/379 (8%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +P  D+FSW   I  + +  Q  EAL LY  MQ  +    + F +SS L A +       
Sbjct: 84  LPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQR-QGLCPSTFAVSSALRAYARTTYKMG 142

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G  IH    + GF +   V +AL D+Y K G +N A+++FD++ +++VVSW +++  + +
Sbjct: 143 GMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLK 202

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLN------ACA------DHAAEELGKQVHGY 285
            G   E   +F ++ K  +       +G         AC       +         + GY
Sbjct: 203 SGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGY 262

Query: 286 MT----RIGYDPY-------SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           +     +  +  +       S +   ++  YSKCG+V+++ K+F+ + + DL+++ ++I+
Sbjct: 263 VNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMIS 322

Query: 335 GYAQNGMPDKALEYFELLLK--SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
            +AQN  P KAL  F  +LK  +  QPD +    V++AC+  G + +   +  S     G
Sbjct: 323 CFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDL-RFASWIESYVNDLG 381

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
                     ++DL A+ G   +A ++   +  K D   +++++ GC I+G +  A +  
Sbjct: 382 TEIDDQLVTALLDLYAKCGSVDKAYELFHGLN-KKDVVAYSAMISGCGINGKVADAIKLF 440

Query: 453 EALF--EIEPENPATYVTM 469
           + +   +I P N AT+  +
Sbjct: 441 DMMVDAQIHP-NLATFTGL 458



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 139/301 (46%), Gaps = 18/301 (5%)

Query: 178 GKEIHGYIMRTGFDSDE--VVWSALSDMYGKCGSINE-ARQIFDKMVDRDVVSWTAMIGR 234
            K+ H  I+  GF++ E  +V   L         I++    I   +   D  SW   I  
Sbjct: 39  AKQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSILYHLPHPDSFSWGWAIRY 98

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           + Q+G+ +E   L+ ++ + G+ P+ F  +  L A A    +  G  +H    + G+   
Sbjct: 99  FSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNC 158

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            +  +ALV +YSK G++  ++KVF+ +   ++VSW S+++G+ ++G   +A   F+ +  
Sbjct: 159 VYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQI-- 216

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
             ++ D I +  +++     G +D+    F  + EK+  ++ A     ++      G   
Sbjct: 217 --SKKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNA-----LISGYVNCGDIK 269

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIY 473
            A      MP + +   W +++ G    G++D    +A  LF +I  ++  T+  M + +
Sbjct: 270 SAWRFFDAMPER-NSVSWITMIAGYSKCGDVD----SASKLFDQIAKKDLLTFNAMISCF 324

Query: 474 A 474
           A
Sbjct: 325 A 325


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 235/452 (51%), Gaps = 41/452 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  +++ C +  A  EG+++H  +   G +   F++  L+D+Y+    I  A  L
Sbjct: 121 PNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 180

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M ER++ ++ +MISG+     +  AR LFD  P+RD   W  M+SGY+       A 
Sbjct: 181 FVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAAR 240

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M                                           D + W+ + + 
Sbjct: 241 KLFDTMPY----------------------------------------RDTMSWNTMLNG 260

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           Y   G +    Q+F++M +R+V SW  +IG Y   G   E    F  ++  G + PN  T
Sbjct: 261 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDAT 320

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL+ACA   A +LGK VH Y   IG+    +  +AL+ MYSKCG +EN+ +VF  M 
Sbjct: 321 LVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMD 380

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL++W S+I G A +G    AL  F  +  +G +PD I F+GVL +CTH GLV++G  
Sbjct: 381 LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTS 440

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+  ++ +    +HY C+VDL  R+G    A + + +MPM+ D  +WA+LLG CRI+
Sbjct: 441 YFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIY 500

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            N+DLA+ A + L  +EP+NPA YV ++NIY 
Sbjct: 501 KNIDLAELALQKLIVLEPKNPANYVLLSNIYG 532



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 12/214 (5%)

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  +L +C   A   L ++V   +   G+    + A  +V  +     + +++ +F+  P
Sbjct: 28  FISLLRSCKTVA---LLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFP 84

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
            P +  W ++  GY  N    + +  F  +     +P+   F  VL +C   G   +G +
Sbjct: 85  DPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG-E 143

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H    K GL         ++D+ +       A  +   M ++ +   W S++ G  + 
Sbjct: 144 EIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILC 202

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             + LA+R    LF++ PE     V + NI  S 
Sbjct: 203 NRVALARR----LFDLAPERD---VVLWNIMVSG 229


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 266/472 (56%), Gaps = 12/472 (2%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R+  AL++  +I       ++S++    QN    E  +  S +   GF+P      C++ 
Sbjct: 315 RVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPD---HACIVS 371

Query: 70  MYAKCGNIS---DAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + +  G++    + + +      +  + D    NT++  + K   +E + ++FD M  +D
Sbjct: 372 LSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKD 431

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + SWT +I+ Y + ++ IEAL+++R  Q  E    +   + S+L A S ++ + L K++H
Sbjct: 432 HISWTTIITCYAQSSRHIEALEIFREAQK-EGIKVDPMMIGSILEACSGLETILLAKQLH 490

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
            Y +R G   D VV + + D+YG+CG +  + ++F+ +  +D+V+WT+MI  Y   G   
Sbjct: 491 CYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLN 549

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E   LF+E+  + ++P++     +L A    ++   GK+VHG++ R  +       S+LV
Sbjct: 550 EALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLV 609

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            MYS CG++  + KVFN +   D+V WT++I     +G   +A++ F+ +L++G  PDH+
Sbjct: 610 DMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHV 669

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            F+ +L AC+H+ LV++G  Y   +   + L    +HYAC+VDLL RSG+  EA + I  
Sbjct: 670 SFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKS 729

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           MP+KP   +W SLLG CR+H N +LA  AA  L E+EP+NP  YV ++N++A
Sbjct: 730 MPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFA 781



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/440 (29%), Positives = 214/440 (48%), Gaps = 42/440 (9%)

Query: 5   LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG- 60
           LC +  L++AL++L   +    P    Y  ++      +A+ +G +VH+H  ++G   G 
Sbjct: 34  LCKEGNLRQALRLLTSQTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGD 93

Query: 61  -VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             F++  LL MY KCG ++DA                               R LFD M 
Sbjct: 94  DGFLATKLLFMYGKCGRVADA-------------------------------RLLFDGMS 122

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS--VSNKFTLSSVLSAVSAIQCLRL 177
            R  FSW A+I  Y+      EAL +YR M+    S    +  TL+SVL A       R 
Sbjct: 123 SRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRC 182

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYF 236
           G E+HG  ++ G D    V +AL  MY KCG ++ A ++F+ M D RDV SW +MI    
Sbjct: 183 GCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCL 242

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           Q G   +   LF  + ++ +  N++T  GVL  C + A   LG+++H  + + G +  + 
Sbjct: 243 QNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSE-VNI 301

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             +AL+ MY+KCG V+++ +VF  +   D +SW S+++ Y QNG+  +A+E+   +L+ G
Sbjct: 302 QCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGG 361

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            QPDH   V + +A  H G +  G +  H+   K  L         ++D+  +      +
Sbjct: 362 FQPDHACIVSLSSAVGHLGWLLNG-KEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYS 420

Query: 417 EDVISKMPMKPDKFLWASLL 436
             V  +M +K D   W +++
Sbjct: 421 AHVFDRMRIK-DHISWTTII 439



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 128/429 (29%), Positives = 200/429 (46%), Gaps = 52/429 (12%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           ++Q C +   L  G+++H+ L  SG +  +   N LL MY KCG +  A  +F E+ E+D
Sbjct: 272 VLQVCTELAQLNLGRELHAALLKSGSEVNI-QCNALLVMYTKCGRVDSALRVFREIDEKD 330

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
             S+N+M+S + + G   +A     EM  R  F             QP  A         
Sbjct: 331 YISWNSMLSCYVQNGLYAEAIEFISEM-LRGGF-------------QPDHA--------- 367

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
                     + S+ SAV  +  L  GKE+H Y ++   DSD  V + L DMY KC  I 
Sbjct: 368 ---------CIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIE 418

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            +  +FD+M  +D +SWT +I  Y Q  R  E   +F E  K GI+ +      +L AC+
Sbjct: 419 YSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                 L KQ+H Y  R G        + ++ +Y +CG V +S K+F  + + D+V+WTS
Sbjct: 479 GLETILLAKQLHCYAIRNGLLDL-VVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTS 537

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I  YA +G+ ++AL  F  +  +  QPD +  V +L A         GL      KE H
Sbjct: 538 MINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAI-------GGLSSLAKGKEVH 590

Query: 392 GLTYTADHY------ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN- 444
           G     + +      + +VD+ +  G    A  V + +  K D  LW +++    +HG+ 
Sbjct: 591 GFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMHGHG 649

Query: 445 ---LDLAKR 450
              +DL KR
Sbjct: 650 KQAIDLFKR 658



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 10/287 (3%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGF--DSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
           VL  V+A + +  G ++H + + TG     D  + + L  MYGKCG + +AR +FD M  
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSEL---IKSGIRPNAFTFAGVLNACADHAAEELG 279
           R V SW A+IG Y   G   E   ++  +     SG+ P+  T A VL A         G
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCG 183

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQ 338
            +VHG   + G D  +F A+AL+ MY+KCG ++++ +VF  M    D+ SW S+I+G  Q
Sbjct: 184 CEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQ 243

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           NGM  +AL+ F  + ++    +    VGVL  CT    ++ G +  H+   K G      
Sbjct: 244 NGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRE-LHAALLKSGSEVNIQ 302

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
             A +V +  + GR   A  V  ++  K D   W S+L  C +   L
Sbjct: 303 CNALLV-MYTKCGRVDSALRVFREIDEK-DYISWNSML-SCYVQNGL 346


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 227/381 (59%), Gaps = 3/381 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +++ ++K  SL +A  +FD    R++ +W+AM++GY +  + +EA+ L+  M  F   
Sbjct: 260 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRM--FSAG 317

Query: 156 VS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           +  +++T+  VL+A S I  L  GK++H ++++ GF+      +AL DMY K G + +AR
Sbjct: 318 IKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADAR 377

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           + FD + +RDV  WT++I  Y Q    EE   L+  +  +GI PN  T A VL AC+  A
Sbjct: 378 KGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 437

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             ELGKQVHG+  + G+       SAL  MYSKCG++E+   VF   P  D+VSW ++I+
Sbjct: 438 TLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMIS 497

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G + NG  D+ALE FE +L  G +PD + FV +++AC+H G V++G  YF+ + ++ GL 
Sbjct: 498 GLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLD 557

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              DHYAC+VDLL+R+G+  EA++ I    +     LW  LL  C+ HG  +L   A E 
Sbjct: 558 PKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEK 617

Query: 455 LFEIEPENPATYVTMANIYAS 475
           L  +     +TYV ++ IY +
Sbjct: 618 LMALGSRESSTYVQLSGIYTA 638



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/514 (27%), Positives = 241/514 (46%), Gaps = 82/514 (15%)

Query: 38  QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC----------------------- 74
           Q R L  G+ VH  +  +G    +  +N L++ YAKC                       
Sbjct: 26  QQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNS 85

Query: 75  --------GNISDAQT---LFDEMQERDVCSYNTMISG---------------------- 101
                   G IS + T   LF EM+ +D+      ++G                      
Sbjct: 86  LITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVV 145

Query: 102 -----------------FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                            + K G +E    +F  MP+R+ ++W+ M+SGY    +  EA+ 
Sbjct: 146 KMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIK 205

Query: 145 LYRM-MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           ++ + ++  E    + +  ++VLS+++A   + LG++IH   ++ G      + +AL  M
Sbjct: 206 VFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTM 265

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC S+NEA ++FD   DR+ ++W+AM+  Y Q G   E   LFS +  +GI+P+ +T 
Sbjct: 266 YSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTI 325

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            GVLNAC+D    E GKQ+H ++ ++G++ + FA +ALV MY+K G + +++K F+ +  
Sbjct: 326 VGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQE 385

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+  WTSLI+GY QN   ++AL  +  +  +G  P+      VL AC+    ++ G Q 
Sbjct: 386 RDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ- 444

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    KHG        + +  + ++ G   +   V  + P K D   W +++ G   +G
Sbjct: 445 VHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNK-DVVSWNAMISGLSHNG 503

Query: 444 NLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
             D A    E +    +EP++    VT  NI ++
Sbjct: 504 QGDEALELFEEMLAEGMEPDD----VTFVNIISA 533



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 182/399 (45%), Gaps = 71/399 (17%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG---------- 60
           L EA ++       +   +S+++    QN    E  K+ S + S+G KP           
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331

Query: 61  -------------------------VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
                                    +F +  L+DMYAK G ++DA+  FD +QERDV  +
Sbjct: 332 CSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALW 391

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            ++IS                               GYV+ +   EAL LYR M+     
Sbjct: 392 TSLIS-------------------------------GYVQNSDNEEALILYRRMKT-AGI 419

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           + N  T++SVL A S++  L LGK++HG+ ++ GF  +  + SALS MY KCGS+ +   
Sbjct: 420 IPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNL 479

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F +  ++DVVSW AMI      G+ +E   LF E++  G+ P+  TF  +++AC+    
Sbjct: 480 VFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGF 539

Query: 276 EELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKK-VFNGMPRPDLVSWTSLI 333
            E G      M+ +IG DP     + +V + S+ G ++ +K+ + +      L  W  L+
Sbjct: 540 VERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILL 599

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTA 370
           +    +G  +  +   E L+  G++    ++   G+ TA
Sbjct: 600 SACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTA 638



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 8/239 (3%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TL   L+  S  + L  G+ +HG I+RTG  +     + L + Y KCG + +A  IF+ +
Sbjct: 16  TLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAI 75

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFA---LFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           + +DVVSW ++I  Y Q G     +    LF E+    I PNA+T AG+  A +   +  
Sbjct: 76  ICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSST 135

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           +G+Q H  + ++      +  ++LV MY K G VE+  KVF  MP  +  +W+++++GYA
Sbjct: 136 VGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYA 195

Query: 338 QNGMPDKALEYFELLLK---SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
             G  ++A++ F L L+    G+  D+ VF  VL++      V  G Q  H I  K+GL
Sbjct: 196 TRGRVEEAIKVFNLFLREKEEGSDSDY-VFTAVLSSLAATIYVGLGRQ-IHCITIKNGL 252



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           RR+K A  I      P+    +S+++ C     LE GK+VH H    GF   V I + L 
Sbjct: 412 RRMKTAGII------PNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 465

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNF 124
            MY+KCG++ D   +F     +DV S+N MISG +  G  ++A  LF+EM     + D+ 
Sbjct: 466 TMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDV 525

Query: 125 SWTAMIS 131
           ++  +IS
Sbjct: 526 TFVNIIS 532


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 267/468 (57%), Gaps = 7/468 (1%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73
           A ++  ++ H     ++S+I    +N   +E   ++  +   G  P  F  + +   ++ 
Sbjct: 129 ARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSD 188

Query: 74  CGNISDAQTLFDEMQERDVCSYNT-----MISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            G + + Q    +     V   N      ++  + K G +  AR + D++  +D   +TA
Sbjct: 189 LGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTA 248

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I GY  + +  E+L ++R M   +   +N++TLSSVL     ++ L  G+ IHG I++ 
Sbjct: 249 LIVGYSHHGEDGESLQVFRNMTK-KGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKA 307

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G +S     ++L  MY +CG ++++ ++F + ++ + V+WT++I    Q GR E     F
Sbjct: 308 GLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKF 367

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++++S I PN+FT + VL AC+  A  E GKQ+H  + + G D   +  +AL+  Y KC
Sbjct: 368 RQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKC 427

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+ E ++ VFNG+   D+VS  S+I  YAQNG   +AL+ F  +  +G +P+++ ++GVL
Sbjct: 428 GSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVL 487

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC +AGL+++G   F S +    +  T DHYAC+VDLL R+GR  EAE +I+++ +  D
Sbjct: 488 SACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SD 546

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W +LL  CRIHG++++AKR    + ++ PE+  T+V ++N+YAS 
Sbjct: 547 VVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYAST 594



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 197/400 (49%), Gaps = 36/400 (9%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S  +YSSLIQ C   +++ +  K+ SH    GF     + N L+D Y KCG         
Sbjct: 76  STKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLIDAYLKCG--------- 124

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                                 S+  AR +FDE+P R   +W +MI+ Y+R  +  EA+D
Sbjct: 125 ----------------------SVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAID 162

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDM 203
           +Y+ M   +  + ++FT SSV  A S +  +  G+  HG  +  G     V V SAL DM
Sbjct: 163 IYQRMVP-DGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDM 221

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G + +AR + D++V +DVV +TA+I  Y   G   E   +F  + K GI  N +T 
Sbjct: 222 YAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTL 281

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           + VL  C +      G+ +HG + + G +    + ++L+ MY +CG V++S KVF     
Sbjct: 282 SSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFIN 341

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
           P+ V+WTS+I G  QNG  + AL  F  +L+S   P+      VL AC+   ++++G Q 
Sbjct: 342 PNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ- 400

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
            H+I  K GL       A ++D   + G    A  V + +
Sbjct: 401 IHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGL 440



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 145/287 (50%), Gaps = 5/287 (1%)

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
           SS++     I+ +    +I  + ++ GF     + + L D Y KCGS+  AR++FD++  
Sbjct: 81  SSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVPH 138

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           R +V+W +MI  Y + GR +E   ++  ++  GI P+ FTF+ V  A +D      G++ 
Sbjct: 139 RHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRA 198

Query: 283 HGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           HG    +G    + F  SALV MY+K G + +++ V + +   D+V +T+LI GY+ +G 
Sbjct: 199 HGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGE 258

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             ++L+ F  + K G + +      VL  C +   +  G +  H +  K GL        
Sbjct: 259 DGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSG-RLIHGLIVKAGLESAVASQT 317

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            ++ +  R G   ++  V  K  + P++  W S++ G   +G  ++A
Sbjct: 318 SLLTMYYRCGLVDDSLKVF-KQFINPNQVTWTSVIVGLVQNGREEIA 363


>gi|255578455|ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530403|gb|EEF32291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 718

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 252/460 (54%), Gaps = 3/460 (0%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+   +  +K   ++      P    +S+ +  C   RAL EG ++H+      F+   
Sbjct: 235 LDVGNEREAVKMFFKMFQTDVRPLNFTFSNALIACSAMRALNEGMQIHAFAIKIKFEEDE 294

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            +S+ L +MYAKCG +  A+ +FD+   RDV S+ +M+S +   G   +AR LF++MP+ 
Sbjct: 295 AVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREARELFEKMPEW 354

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
              SW AM++GY+R  Q  EALD   +M+     + +  TL  +L+  + I  + +GK+ 
Sbjct: 355 SVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDI-DHITLGLLLNVCAGISDVEMGKQA 413

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGR 240
           HG+I R GF S  +V +AL DMYGKCG++  AR  F +M   RD +SW A++  Y +  +
Sbjct: 414 HGFIYRHGFSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALLTSYARHHQ 473

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E+   +F E+ +   +P+ FTF  +L ACA+  A + GK++HG+M R GY+  +  + A
Sbjct: 474 SEQAMMIFGEM-QWETKPSTFTFGTLLAACANIFALDQGKEIHGFMIRNGYNLDTVISGA 532

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MYSKC  +  +  VFN     D++ W S+I G   NG   + L+ F  + K G +PD
Sbjct: 533 LVDMYSKCRCLSYALTVFNRAGSRDVILWNSIILGCCHNGRGKEVLKLFGQMEKEGVKPD 592

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           H+ F GVL AC + G V   ++YF+S+ +K  +    +HY C+++L +R       E+ +
Sbjct: 593 HVTFHGVLLACMYEGHVKLAVEYFNSMSDKCCVIPRLEHYECMIELFSRYRCMSRLENFV 652

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
             MP  P   +   +   C+ HG     K  AE L ++ P
Sbjct: 653 KGMPFDPTASMLIRVFDACKEHGPSRFRKWVAEQLNKLNP 692



 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 240/508 (47%), Gaps = 83/508 (16%)

Query: 10  RLKEALQILHQISHPSP-SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           RL++A+ IL   +   P S+Y+SL Q C    ++ E +K+ SHL +    P +F+ N  +
Sbjct: 40  RLQKAVSILFASNSSVPYSLYASLFQLCSSTLSIVEARKIESHLITFNPTPPIFLLNRAI 99

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           + Y KC  + DA                               R LFDEMPQRD  SW A
Sbjct: 100 ETYGKCECLKDA-------------------------------RELFDEMPQRDGGSWNA 128

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           +I  Y +     +AL L++ M N E   +N+ T +SVL + S +  L L ++IHG I++ 
Sbjct: 129 IIKAYTQCGYAEKALGLFKDM-NKEGVFANEITFASVLKSCSDVLDLSLSRQIHGLIVKC 187

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           GF  + ++ SAL D+YGKC  ++EAR +F+++ + + V+W  ++ RY   G   E   +F
Sbjct: 188 GFCGNVILGSALVDVYGKCKVMSEARLMFNEIENCNDVTWNVIVRRYLDVGNEREAVKMF 247

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++ ++ +RP  FTF+  L AC+   A   G Q+H +  +I ++     +S+L +MY+KC
Sbjct: 248 FKMFQTDVRPLNFTFSNALIACSAMRALNEGMQIHAFAIKIKFEEDEAVSSSLSNMYAKC 307

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE------------------ 350
           G +E+++ +F+     D++SWTS+++ YA +G   +A E FE                  
Sbjct: 308 GKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREARELFEKMPEWSVVSWNAMLAGYI 367

Query: 351 -------------LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
                        L+ ++    DHI    +L  C     V+ G       K+ HG  Y  
Sbjct: 368 RSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAGISDVEMG-------KQAHGFIYRH 420

Query: 398 DHYACI------VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-CRIHGNLDLAKR 450
              +CI      +D+  + G    A     +M    D   W +LL    R H +      
Sbjct: 421 GFSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALLTSYARHHQSEQAMMI 480

Query: 451 AAEALFEIEPENPATYVTM----ANIYA 474
             E  +E +P +  T+ T+    ANI+A
Sbjct: 481 FGEMQWETKP-STFTFGTLLAACANIFA 507


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 227/382 (59%), Gaps = 2/382 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++ISG++  G  + A  LFD    +D  +WTAMI G+VR     EA+  +  M+     
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKK-TGV 200

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEAR 214
            +N+ T+ SVL A   ++ +R G+ +HG  + TG    D  + S+L DMYGKC   ++A+
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQ 260

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++FD+M  R+VV+WTA+I  Y Q    ++G  +F E++KS + PN  T + VL+ACA   
Sbjct: 261 KVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A   G++VH YM +   +  + A + L+ +Y KCG +E +  VF  +   ++ +WT++I 
Sbjct: 321 ALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMIN 380

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G+A +G    A + F  +L S   P+ + F+ VL+AC H GLV++G + F S+K +  + 
Sbjct: 381 GFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNME 440

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
             ADHYAC+VDL  R G   EA+ +I +MPM+P   +W +L G C +H + +L K AA  
Sbjct: 441 LKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASR 500

Query: 455 LFEIEPENPATYVTMANIYASA 476
           + +++P +   Y  +AN+Y+ +
Sbjct: 501 VIKLQPSHSGRYTLLANLYSES 522



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 165/345 (47%), Gaps = 9/345 (2%)

Query: 103 TKGGSLEQARNLFDEMPQRDNFSWTAMI---SGYVRYNQPIEALDLYRMMQNFENSVSNK 159
           T       AR L  ++       W ++I   SG +  N+ +  L    M +N    + ++
Sbjct: 47  TAATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRN--GVIPSR 104

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T   +L AV  ++      + H +I++ G DSD  V ++L   Y   G  + A ++FD 
Sbjct: 105 HTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDG 163

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
             D+DVV+WTAMI  + + G   E    F E+ K+G+  N  T   VL A         G
Sbjct: 164 AEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFG 223

Query: 280 KQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           + VHG     G      F  S+LV MY KC   ++++KVF+ MP  ++V+WT+LIAGY Q
Sbjct: 224 RSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQ 283

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +   DK +  FE +LKS   P+      VL+AC H G + +G +  H    K+ +     
Sbjct: 284 SRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG-RRVHCYMIKNSIEINTT 342

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               ++DL  + G   EA  V  ++  K + + W +++ G   HG
Sbjct: 343 AGTTLIDLYVKCGCLEEAILVFERLHEK-NVYTWTAMINGFAAHG 386



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 35/293 (11%)

Query: 45  GKKVHS-HLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           G+ VH  +L++   K  VFI + L+DMY KC    DAQ +FDEM  R+V ++  +I+G+ 
Sbjct: 223 GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV 282

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           +    ++   +F+EM + D                                   N+ TLS
Sbjct: 283 QSRCFDKGMLVFEEMLKSD--------------------------------VAPNEKTLS 310

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SVLSA + +  L  G+ +H Y+++   + +    + L D+Y KCG + EA  +F+++ ++
Sbjct: 311 SVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK 370

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           +V +WTAMI  +   G   + F LF  ++ S + PN  TF  VL+ACA     E G+++ 
Sbjct: 371 NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430

Query: 284 GYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
             M  R   +  +   + +V ++ + G +E +K +   MP  P  V W +L  
Sbjct: 431 LSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFG 483



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 36/233 (15%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS++  C    AL  G++VH ++  +  +        L+D+Y KCG + +A  +
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ + E++V ++  MI+GF   G    A +LF             M+S +V         
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLF-----------YTMLSSHVS-------- 404

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALS 201
                         N+ T  +VLSA +    +  G+ +    M+  F+ +     ++ + 
Sbjct: 405 -------------PNEVTFMAVLSACAHGGLVEEGRRLF-LSMKGRFNMELKADHYACMV 450

Query: 202 DMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
           D++G+ G + EA+ + ++M ++   V W A+ G        E G    S +IK
Sbjct: 451 DLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 260/489 (53%), Gaps = 18/489 (3%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKV-----HSHLKSSG 56
           ID+ C   R+  A  +           ++SLI    +  A EE  K+     H+ L+ + 
Sbjct: 152 IDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNA 211

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQAR 112
           F  G  + +C L++      +S  +TL      +  + D+     ++  + K G L  A 
Sbjct: 212 FTLGSALKSCYLNLN---NMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAI 268

Query: 113 NLFDEMPQRDNFSWTAMISGYVRYNQ-----PIEALDLYRMMQNFENSVSNKFTLSSVLS 167
            LF   P ++   + AMI+G+++          EAL L+  MQ  +    + FT SS++ 
Sbjct: 269 QLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQR-QGIKPSDFTFSSIIK 327

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             + I+    GK+IH +I +    SDE + S L ++Y   GS  +  + F+     D+VS
Sbjct: 328 ICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVS 387

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           WT MI  Y Q G+ E   ALF EL+ SG +P+ F    +L+ACAD AAE  G+QVHGY  
Sbjct: 388 WTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAV 447

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           + G    +   ++ + MY+K GN++++K  F  +  PD+VSW+ +I   AQ+G    A+ 
Sbjct: 448 KTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAIN 507

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            FEL+   G  P+ I F+GVLTAC+H GLV++GL+Y+ S+K+ + +     H  CIVDLL
Sbjct: 508 LFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLL 567

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467
           +R+GR  +A++ I          +W +LL GCRI+ ++   K  AE L E++P+  ++YV
Sbjct: 568 SRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYV 627

Query: 468 TMANIYASA 476
            + NIY  A
Sbjct: 628 LLYNIYTDA 636



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/437 (31%), Positives = 211/437 (48%), Gaps = 45/437 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+ ++  C Q +    GK +H      G    VF++N L+DMY KC  I  A+ LF+   
Sbjct: 113 YAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSD 172

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E D  S+N++I+G+ + G+ E+   L  +M                        L L   
Sbjct: 173 ELDNVSWNSLITGYARVGAYEEMLKLLVKMHH--------------------TGLRL--- 209

Query: 149 MQNFENSVSNKFTLSSVLSA--VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
                    N FTL S L +  ++    +  GK +HGY ++ G D D VV +AL DMY K
Sbjct: 210 ---------NAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAK 260

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE-----EGFALFSELIKSGIRPNAF 261
            G + +A Q+F    +++VV + AMI  + Q    +     E   LFS++ + GI+P+ F
Sbjct: 261 TGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDF 320

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TF+ ++  C    A E GKQ+H ++ +       F  S L+ +YS  G+ E+  K FN  
Sbjct: 321 TFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNST 380

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P+ D+VSWT++IAGYAQNG  + AL  F  LL SG +PD  +   +L+AC        G 
Sbjct: 381 PKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGE 440

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           Q  H    K G+   A      + + A+SG    A+    ++   PD   W+ ++     
Sbjct: 441 Q-VHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIK-NPDVVSWSVMICSNAQ 498

Query: 442 HGNLDLAKRAAEALFEI 458
           HG+   AK A   LFE+
Sbjct: 499 HGH---AKDAIN-LFEL 511



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 200/438 (45%), Gaps = 51/438 (11%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+ L+QF  ++ +   GK  H+H+  + F P +F+ N  L++Y+K G + +AQ       
Sbjct: 12  YTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQ------- 64

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR---YNQPIEALDL 145
                                    LFD M +R   S+  +ISGY     Y++ I     
Sbjct: 65  ------------------------KLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSE 100

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
            RM         +KF+ + VLSA   I+   LGK IHG  +  G      + + L DMY 
Sbjct: 101 ARM----ACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYC 156

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KC  I+ AR +F+   + D VSW ++I  Y + G  EE   L  ++  +G+R NAFT   
Sbjct: 157 KCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGS 216

Query: 266 VLNACADHAAEEL--GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            L +C  +    +  GK +HGY  + G D      +AL+ MY+K G + ++ ++F   P 
Sbjct: 217 ALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPN 276

Query: 324 PDLVSWTSLIAGYAQNGMPDK-----ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
            ++V + ++IAG+ Q    DK     AL+ F  + + G +P    F  ++  C H    +
Sbjct: 277 QNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFE 336

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            G Q  H+   KH +       + +++L +  G   +     +  P K D   W +++ G
Sbjct: 337 YGKQ-IHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTP-KLDIVSWTTMIAG 394

Query: 439 CRIHGNLDLAKRAAEALF 456
              +G  +    +A ALF
Sbjct: 395 YAQNGQFE----SALALF 408


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/381 (38%), Positives = 228/381 (59%), Gaps = 2/381 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++++ + K   ++ A  +F    +R++ +W+AMI+GY +  +   A  ++  M +    
Sbjct: 264 NSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHS-SGF 322

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
              +FT   VL+A S +  L +GK+ H  +++ GF++   V SAL DMY KCG I +A+ 
Sbjct: 323 TPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKD 382

Query: 216 IFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            F ++ D  DVV WTAMI  + Q G  EE   L+S + K GI P+  T   VL ACA  A
Sbjct: 383 GFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLA 442

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A +LGKQ+H  + +  +       +AL  MYSKCGN+E+S  VF  MP  D++SW S+I+
Sbjct: 443 ALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIIS 502

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            ++Q+G    AL+ FE +   GT PDHI F+ +L+AC+H GLVD+G  YF ++ + + L 
Sbjct: 503 VFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLI 562

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
            T DHYAC+VD+L+R+G+  EA+D I  + +     LW  +LG CR   + D+   A E 
Sbjct: 563 PTLDHYACMVDILSRAGQLKEAKDFIDSITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQ 622

Query: 455 LFEIEPENPATYVTMANIYAS 475
           L E+  E+ + Y+ ++NIYA+
Sbjct: 623 LMELGTEDSSAYILLSNIYAA 643



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 209/426 (49%), Gaps = 38/426 (8%)

Query: 52  LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111
           L SS     VF+S  LL+MY K G +SDA+ +FD M  R+  S+  M+SG+  G   E+A
Sbjct: 149 LPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEA 208

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
             LF  M Q+                 P+E                N+F  ++VLSAVS 
Sbjct: 209 FELFRLMLQK----------------CPLE---------------KNEFVTTAVLSAVSV 237

Query: 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM 231
              L +G ++HG +++ G      V ++L  MY K   ++ A ++F    +R+ ++W+AM
Sbjct: 238 PLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAM 297

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  Y Q G       +F ++  SG  P  FTF GVLNAC+D  A  +GKQ H  M ++G+
Sbjct: 298 ITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGF 357

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           +   +  SALV MY+KCG + ++K  F+ +    D+V WT++I G+ QNG  ++AL  + 
Sbjct: 358 ETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYS 417

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            + K G  P ++    VL AC     +D G Q  H+   K   +        +  + ++ 
Sbjct: 418 RMDKQGIIPSYLTVTSVLRACACLAALDLGKQ-LHAQILKCRFSLGGSVGTALSTMYSKC 476

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT-YVTM 469
           G   ++  V  +MP + D   W S++     HG       A +   E++ E  A  ++T 
Sbjct: 477 GNLEDSMVVFRRMPDR-DVISWNSIISVFSQHGR---GSDALDMFEEMKLEGTAPDHITF 532

Query: 470 ANIYAS 475
            N+ ++
Sbjct: 533 INLLSA 538



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 44/217 (20%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    +S+++ C    AL+ GK++H+ +    F  G  +   L  MY+KCGN+ D+  +
Sbjct: 426 PSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVV 485

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M +RDV S+N++IS F++ G    A ++F+EM                         
Sbjct: 486 FRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEM------------------------- 520

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV------W 197
                    E +  +  T  ++LSA     C  +G    G+        D  +      +
Sbjct: 521 -------KLEGTAPDHITFINLLSA-----CSHMGLVDRGWFYFRAMTKDYNLIPTLDHY 568

Query: 198 SALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
           + + D+  + G + EA+   D + +D     W  ++G
Sbjct: 569 ACMVDILSRAGQLKEAKDFIDSITIDHGTCLWRIVLG 605



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 143/331 (43%), Gaps = 54/331 (16%)

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS--INEARQIFDKM--VDR 223
           A S+ +  R G+ +HG+ +++G  S   V ++L   Y       +  A  +F  +    R
Sbjct: 23  AASSDRTPRTGEALHGWALKSGAASHAPVSNSLITFYCSLPRPLLGAAYVVFADIPAALR 82

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPNAFTFAGVLNACADHAAEELGKQ 281
           DV SW +++             + F  ++ S   + P+  +FA    A A   +   G  
Sbjct: 83  DVASWNSLLNP-LSRHHPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAV 141

Query: 282 VHGYMTRIGYDPYS---FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            H    ++     S   F ++AL++MY K G V ++K+VF+GM   + VSW ++++GYA 
Sbjct: 142 THALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYAT 201

Query: 339 NGMPDKALEYFELLLKS-------------------------GTQPDHIV-------FVG 366
               ++A E F L+L+                          GTQ   +V       FV 
Sbjct: 202 GKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVS 261

Query: 367 V----LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
           V    +T    A  +D  ++ F S KE++ +T++A     ++   A++G  + A  +  +
Sbjct: 262 VENSLVTMYAKAECMDAAMRVFGSSKERNSITWSA-----MITGYAQNGEANCAARMFLQ 316

Query: 423 M---PMKPDKFLWASLLGGCRIHGNLDLAKR 450
           M      P +F +  +L  C   G L + K+
Sbjct: 317 MHSSGFTPTEFTFVGVLNACSDMGALVVGKQ 347


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 263/472 (55%), Gaps = 23/472 (4%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           +I S L    R  R +++G  V+      G++  + + N +++++ +CG +  A+ +FDE
Sbjct: 104 TIASVLKAVSRLGR-IKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDE 162

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M+ERD  S+N+MI+G+   G ++ AR LFD M +R+  SWT+MI GYV+    +EA  L+
Sbjct: 163 MEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLF 222

Query: 147 RMM-----QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG------------ 189
             M      +++  VS   ++ ++++A +  + + +       +M +G            
Sbjct: 223 ERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKE 282

Query: 190 -FDS----DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            FD     +   W  + D Y K G ++ AR +FD+M ++++V+W+ MIG Y + G     
Sbjct: 283 FFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSS 342

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             L+    + GI+P+     G+++AC+     +  + V          P     ++L+ M
Sbjct: 343 LKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDM 402

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCGN+E + +VF  + + DL  ++++I  +A +G+ + A+  F  + K+  +PD + F
Sbjct: 403 YAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAF 462

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           +GVLTAC H GLV +G + F  + +++G+  +  HYAC+VD+L R+G   EA  +I  MP
Sbjct: 463 LGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMP 522

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + P+  +W +LL  CR+H N+ LA+ AA  LF+IEP N   YV + NIYA A
Sbjct: 523 VAPNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADA 574



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 166/347 (47%), Gaps = 54/347 (15%)

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
           + N ++  ++K G++  A  LFDE P+ ++F WTA+I G+   NQ   A   +  M   E
Sbjct: 38  TLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHR-E 96

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           N V   FT++SVL AVS +  ++ G  ++G  +R G++ D VV + + +++ +CG +  A
Sbjct: 97  NIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSA 156

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           RQ+FD+M +RD VSW +MI  Y   GR +    LF  + +  +                 
Sbjct: 157 RQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNV----------------- 199

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
                                  + ++++  Y K G++  ++ +F  MP  DL SW  ++
Sbjct: 200 ----------------------ISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMV 237

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIV--FVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           + Y   G    A   FEL+      P H V  +  +++ C  AG +D   ++F  ++E++
Sbjct: 238 SAYMSVGNLVAARNLFELM------PIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERN 291

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             ++       I+D   + G    A  V  +MP K +   W++++GG
Sbjct: 292 VASWVM-----IIDGYIKVGDVDAARSVFDQMPEK-NLVAWSTMIGG 332



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 173 QC--LRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           QC  L+    IH +++ +G   S ++  + L  +Y K G+++ A ++FD+  + +   WT
Sbjct: 12  QCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWT 71

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           A+I  + +  + E  FA F ++ +  I P  FT A VL A +     + G  V+G   R 
Sbjct: 72  ALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRC 131

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           GY+      + ++ ++ +CG + +++++F+ M   D VSW S+I GY  NG  D A + F
Sbjct: 132 GYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLF 191

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           + +     + + I +  ++     AG + +    F  + EK   ++       +V     
Sbjct: 192 DRM----EERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKV-----MVSAYMS 242

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
            G    A ++   MP+  D   W  ++ GC   G +D AK   E    ++  N A++V +
Sbjct: 243 VGNLVAARNLFELMPIH-DVGTWNLMISGCCKAGEMDAAK---EFFDRMQERNVASWVMI 298

Query: 470 ANIY 473
            + Y
Sbjct: 299 IDGY 302



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 7/181 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +    +I  C Q    +  + V          P + +   L+DMYAKCGNI  A  +
Sbjct: 356 PDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQV 415

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQP 139
           F+ + ++D+  Y+T+I+ F   G  E A +LF EM +     D  ++  +++        
Sbjct: 416 FEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLV 475

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            E   L+R M +      ++   + ++  +    CL   +E H  I       +  VW A
Sbjct: 476 GEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCL---EEAHSLICSMPVAPNATVWGA 532

Query: 200 L 200
           L
Sbjct: 533 L 533


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 239/383 (62%), Gaps = 5/383 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
           N +I+ ++K G L++AR +F  + + RD  SW +M+  Y+++ +  +AL+LY  M     
Sbjct: 177 NALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEM-TVRG 235

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS-INEA 213
            + + FTL+SVL+A + +Q L  G + H  ++++G+  +  V S L D+Y KCG  + + 
Sbjct: 236 LIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDC 295

Query: 214 RQIFDKMVDRDVVSWTAMIGRY-FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           R++FD++ + D+V W  MI  Y   E   +E    F +L   G RP+  +   V++AC++
Sbjct: 296 RKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSN 355

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
            ++   G+QVHG   ++       + + AL+ MYSKCGN+ ++K +F+ MP  + VS+ S
Sbjct: 356 MSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNS 415

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +IAGYAQ+GM  ++L  F+ +L+    P +I F+ VL AC H G V+ G  YF+ +K+K 
Sbjct: 416 MIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKF 475

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           G+   A H++C++DLL R+G+  EAE +I  +P  P  F W++LLG CRIHGN++LA +A
Sbjct: 476 GIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKA 535

Query: 452 AEALFEIEPENPATYVTMANIYA 474
           A  L +++P N A YV +ANIY+
Sbjct: 536 ANRLLQLDPLNAAPYVMLANIYS 558



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 233/465 (50%), Gaps = 33/465 (7%)

Query: 23  HPSPSIYSSLIQF---CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           H   S+  S  QF   C  +R L  GK +H+    S      ++SN  L +Y+KC  +S 
Sbjct: 2   HHFSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSA 61

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A+ +FD   + +V S+NT+IS + K   +E A  LFDEMPQ D+ S+  +I+ Y R    
Sbjct: 62  ARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDT 121

Query: 140 IEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             A  L+  M + F +   + FTLS +++A      + L +++H   + TG DS   V +
Sbjct: 122 QPAFQLFLEMREAFLD--MDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGN 177

Query: 199 ALSDMYGKCGSINEARQIFDKMV-DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           AL   Y K G + EAR+IF  +  DRD VSW +M+  Y Q     +   L+ E+   G+ 
Sbjct: 178 ALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLI 237

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN-VENSKK 316
            + FT A VL A  +      G Q H  + + GY   S   S L+ +YSKCG  + + +K
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRK 297

Query: 317 VFNGMPRPDLVSWTSLIAGYA-QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           VF+ +  PDLV W ++I+GY+    + D+ALE F  L   G +PD    V V++AC++  
Sbjct: 298 VFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMS 357

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYA-------CIVDLLARSGRFHEAEDVISKMPMKPD 428
              +G       ++ HGL    D  +        ++ + ++ G   +A+ +   MP + +
Sbjct: 358 SPSQG-------RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHN 409

Query: 429 KFLWASLLGGCRIHG----NLDLAKRAAEALFEIEPENPATYVTM 469
              + S++ G   HG    +L L +R  E  F   P N  T++++
Sbjct: 410 TVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDF--TPTN-ITFISV 451


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 261/469 (55%), Gaps = 40/469 (8%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           E  Q+ H++       S +++ + ++ C Q R L   K++H  +  +G++    I   L+
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALM 348

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
             Y+KC ++ +A  LF                        + A N+          +WTA
Sbjct: 349 VTYSKCSSVDEAFKLFSMA---------------------DAAHNVV---------TWTA 378

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI G+V+ N   +A+DL+  M   E    N FT S+VL+   +     L  ++H  I++ 
Sbjct: 379 MIGGFVQNNNNKKAVDLFCQMSR-EGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKA 433

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
            ++    V +AL D Y K G++ E+ ++F  +  +D+V+W+AM+    Q    E+   +F
Sbjct: 434 YYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVF 493

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAE-ELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
            +L+K G++PN +TF+ V+NAC+  AA  E GKQ+H    + G       +SAL+ MYSK
Sbjct: 494 IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSK 553

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            GN+E+++KVF      D+VSW S+I GY Q+G   KALE F+++   G   D + F+GV
Sbjct: 554 KGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGV 613

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTACTHAGLV++G +YF+ + + + +    +HY+C+VDL +R+G F +A D+I+ MP   
Sbjct: 614 LTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPA 673

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              +W +LL  CR+H NL+L K AAE L  ++P +   YV ++NI+A A
Sbjct: 674 SPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVA 722



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 220/453 (48%), Gaps = 50/453 (11%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           E + +++Q+     +P+   +++++        +E G +VH+ +  +GF+   F+ N L+
Sbjct: 188 EVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALI 247

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY K   + DA+ +F                               D M  RD+ +W  
Sbjct: 248 CMYLKSEMVGDAEAVF-------------------------------DSMVVRDSVTWNI 276

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI GY      +E   ++  M+     +S +    + L   S  + L   K++H  +++ 
Sbjct: 277 MIGGYAAIGFYLEGFQMFHRMRLAGVKLS-RTVFCTALKLCSQQRELNFTKQLHCGVVKN 335

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFA 246
           G++  + + +AL   Y KC S++EA ++F  M D   +VV+WTAMIG + Q    ++   
Sbjct: 336 GYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAHNVVTWTAMIGGFVQNNNNKKAVD 394

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++ + G+RPN FT++ VL          L  Q+H  + +  Y+     A+AL+  Y 
Sbjct: 395 LFCQMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYV 450

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K GNV  S +VF  +P  D+V+W++++ G AQ    +KA+E F  L+K G +P+   F  
Sbjct: 451 KTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSS 510

Query: 367 VLTAC-THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           V+ AC + A  V+ G Q  H+   K G +      + ++ + ++ G    AE V ++   
Sbjct: 511 VINACSSSAATVEHGKQ-IHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEE 569

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           + D   W S++ G   HG+   AK+A E +F+I
Sbjct: 570 R-DIVSWNSMITGYGQHGD---AKKALE-VFQI 597



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 186/395 (47%), Gaps = 39/395 (9%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G++VH     SGF   V +   L+DMY K  +  D + +FDEM  ++V S+ +++SG+ +
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G  ++  +L ++M                                  E    N FT ++
Sbjct: 183 NGLNDEVIHLINQM--------------------------------QMEGVNPNGFTFAT 210

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           VL A++    +  G ++H  I++ GF+    V +AL  MY K   + +A  +FD MV RD
Sbjct: 211 VLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRD 270

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
            V+W  MIG Y   G   EGF +F  +  +G++ +   F   L  C+        KQ+H 
Sbjct: 271 SVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHC 330

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-GMPRPDLVSWTSLIAGYAQNGMPD 343
            + + GY+      +AL+  YSKC +V+ + K+F+      ++V+WT++I G+ QN    
Sbjct: 331 GVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNK 390

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           KA++ F  + + G +P+H  +  VL     + L     Q   +  EK     TA     +
Sbjct: 391 KAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATA-----L 445

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +D   ++G   E+  V   +P K D   W+++L G
Sbjct: 446 LDAYVKTGNVVESARVFYSIPAK-DIVAWSAMLTG 479



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 188/404 (46%), Gaps = 39/404 (9%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  LFDE P +D   +  ++  + R N   EAL L++ + +    V +  TLS  L    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGV-DGLTLSCALKVCG 115

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
            +    +G+++H   +++GF  D  V ++L DMY K     + R IFD+M  ++VVSWT+
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           ++  Y + G  +E   L +++   G+ PN FTFA VL A AD +  E G QVH  + + G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           ++  +F  +AL+ MY K   V +++ VF+ M   D V+W  +I GYA  G   +  + F 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 351 LLLKSGTQPDHIVFVGVLTACT-----------HAGLVDKGLQYFHSIKEKHGLTYT--- 396
            +  +G +    VF   L  C+           H G+V  G ++   I+    +TY+   
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCS 355

Query: 397 -----------ADHYACIVDLLARSGRF------HEAEDVISKMP---MKPDKFLWASLL 436
                      AD    +V   A  G F       +A D+  +M    ++P+ F ++++L
Sbjct: 356 SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVL 415

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPA----TYVTMANIYASA 476
            G        L  +  +A +E  P         YV   N+  SA
Sbjct: 416 AGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459


>gi|357160774|ref|XP_003578871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Brachypodium distachyon]
          Length = 599

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 156/388 (40%), Positives = 221/388 (56%), Gaps = 7/388 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I+ + + G+   AR+LFD MP RD  SWTA++SGY    +P  AL L R M      
Sbjct: 49  NHIIAAYCRCGATACARDLFDGMPDRDVVSWTALMSGYSAAGRPRAALSLLRAMSRTRGG 108

Query: 156 VS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           V  N FT S+ +SA + +    LG+++H      G+  DE V +AL DMYGK G    AR
Sbjct: 109 VPPNAFTFSTAVSACARLADAGLGRQVHARAEVEGYARDEFVATALVDMYGKAGCAEGAR 168

Query: 215 QIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELI--KSGIRPNAFTFAGVLNAC 270
            +FD M D  R+ VSW +M+  Y Q     E   LF+E      G+ PN F  + V+NAC
Sbjct: 169 AVFDDMADPARNAVSWGSMLSVYAQNALGHEAVQLFAEFRTRSDGMSPNHFMLSSVVNAC 228

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A      +GK VHG + R G++     A ALV MYSKCG  E S+KVF+ + +P ++ +T
Sbjct: 229 AGVGRLGVGKCVHGTVFRFGHECNGVIAVALVDMYSKCGFYEYSRKVFDRIEQPSVICYT 288

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+I   A+ G+   AL  F  ++  G QP+ +  +GV+ AC+H+GLVD GL   HS++ K
Sbjct: 289 SIIVAAAKYGLGRSALALFSEMIDRGVQPNSVTVLGVMNACSHSGLVDTGLHLLHSMQSK 348

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM--KPDKFLWASLLGGCRIHGNLDLA 448
           +G+   A HY C VD+L R+GR  EA ++ ++  +  +    LW+SLL  CRIH  LDLA
Sbjct: 349 YGIGPCASHYTCAVDMLGRAGRLDEAFELANEAQVEGRDALMLWSSLLSACRIHRRLDLA 408

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
            RA + + E   +     V M+N Y SA
Sbjct: 409 TRAGQRVSEFNQDVAGALVVMSNAYTSA 436



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 163/336 (48%), Gaps = 40/336 (11%)

Query: 10  RLKEALQILHQISH------PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           R + AL +L  +S       P+   +S+ +  C +      G++VH+  +  G+    F+
Sbjct: 91  RPRAALSLLRAMSRTRGGVPPNAFTFSTAVSACARLADAGLGRQVHARAEVEGYARDEFV 150

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +  L+DMY K G    A+ +FD+M +                             P R+ 
Sbjct: 151 ATALVDMYGKAGCAEGARAVFDDMAD-----------------------------PARNA 181

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIH 182
            SW +M+S Y +     EA+ L+   +   + +S N F LSSV++A + +  L +GK +H
Sbjct: 182 VSWGSMLSVYAQNALGHEAVQLFAEFRTRSDGMSPNHFMLSSVVNACAGVGRLGVGKCVH 241

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           G + R G + + V+  AL DMY KCG    +R++FD++    V+ +T++I    + G   
Sbjct: 242 GTVFRFGHECNGVIAVALVDMYSKCGFYEYSRKVFDRIEQPSVICYTSIIVAAAKYGLGR 301

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ-VHGYMTRIGYDPYSFAASAL 301
              ALFSE+I  G++PN+ T  GV+NAC+     + G   +H   ++ G  P +   +  
Sbjct: 302 SALALFSEMIDRGVQPNSVTVLGVMNACSHSGLVDTGLHLLHSMQSKYGIGPCASHYTCA 361

Query: 302 VHMYSKCGNVENSKKVFNGMP---RPDLVSWTSLIA 334
           V M  + G ++ + ++ N      R  L+ W+SL++
Sbjct: 362 VDMLGRAGRLDEAFELANEAQVEGRDALMLWSSLLS 397


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 151/399 (37%), Positives = 239/399 (59%), Gaps = 12/399 (3%)

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           +A  LFDE+ E D  SYN M+S + +  + E+A++ FD MP +D  SW  MI+GY R  +
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170

Query: 139 PIEALDL-YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
             +A +L Y MM+       N+ + ++++S    I+C  L K  H +  +       V W
Sbjct: 171 MEKARELFYSMMEK------NEVSWNAMISGY--IECGDLEKASHFF--KVAPVRGVVAW 220

Query: 198 SALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
           +A+   Y K   +  A  +F  M V++++V+W AMI  Y +  R E+G  LF  +++ GI
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGI 280

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           RPN+   +  L  C++ +A +LG+Q+H  +++        A ++L+ MY KCG + ++ K
Sbjct: 281 RPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWK 340

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F  M + D+V+W ++I+GYAQ+G  DKAL  F  ++ +  +PD I FV VL AC HAGL
Sbjct: 341 LFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 400

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           V+ G+ YF S+   + +    DHY C+VDLL R+G+  EA  +I  MP +P   ++ +LL
Sbjct: 401 VNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLL 460

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           G CR+H N++LA+ AAE L ++  +N A YV +ANIYAS
Sbjct: 461 GACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYAS 499



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           LK    +L +   P+ S  SS +  C +  AL+ G+++H  +  S     V     L+ M
Sbjct: 269 LKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISM 328

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           Y KCG + DA  LF+ M+++DV ++N MISG+ + G+ ++A  LF EM
Sbjct: 329 YCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREM 376



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 80/176 (45%), Gaps = 13/176 (7%)

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
           Y+T+       F  + ++    + G+++ + +VF+GM   + ++W SL+ G +++  P +
Sbjct: 51  YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKD--PSR 108

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
            +E  + L     +PD   +  +L+        +K   +F  +  K   ++       ++
Sbjct: 109 MMEAHQ-LFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNT-----MI 162

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
              AR G   +A ++   M M+ ++  W +++ G    G+L+     A   F++ P
Sbjct: 163 TGYARRGEMEKARELFYSM-MEKNEVSWNAMISGYIECGDLE----KASHFFKVAP 213


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 262/458 (57%), Gaps = 15/458 (3%)

Query: 29  YSSLI-QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++SLI  +CR   A E+  ++   ++ SG +P   + +CLL        +   +T    +
Sbjct: 284 WTSLIGAYCRAGHA-EKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342

Query: 88  QERD----VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
             R+    V   N +IS + K   ++ A  +F  + QRD  SW++M+  Y +    ++ L
Sbjct: 343 VRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCL 402

Query: 144 DLYRMMQ-----NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           +LYR MQ      FE   ++  ++ S  S +     LRLG+  H Y ++     +  V +
Sbjct: 403 ELYREMQFRDKDEFEYDTNSLISIISSCSRLGR---LRLGQSAHCYSIKHLAGENSSVAN 459

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL  MYG+CG+ + AR+IF  +  +DVV+W+A+I  Y   G  ++   L+ +++  G++P
Sbjct: 460 ALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKP 519

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N+ T   V+++CA+ AA E G+ +H ++  +G +      +ALV MY KCG +  ++K+F
Sbjct: 520 NSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMF 579

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + M   D+V+W  +I+GY  +G   +AL+ F ++ +   +P+ + F+ +L+AC HAGLVD
Sbjct: 580 DSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVD 639

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           KG + F  + E++ L     HYAC+VDLL +SG   EAEDV+S MP++PD  +W +LLG 
Sbjct: 640 KGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGA 698

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C++H N ++  R A+  F  +PEN   Y+ M+N Y SA
Sbjct: 699 CKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSA 736



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 207/426 (48%), Gaps = 15/426 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS----- 78
           P   +++SL++   +          H  +++SG +P  F +  +    A+ G +      
Sbjct: 70  PDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAV 129

Query: 79  DAQTLFDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
            A ++   + E D  V   ++++  + + GS+  A  LFDEMP+RD  +WTA+ISG V  
Sbjct: 130 HAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCN 189

Query: 137 NQPIEALD-LYRMMQNFENSVS--NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
            Q  E L  L RM+++  +  +  N  T+ S L A   +  L +G  +HG+ ++ G    
Sbjct: 190 GQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHC 249

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V S+L  MY KC S  +AR +F ++ ++D+VSWT++IG Y + G  E+   LF  + +
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           SG++P+    + +L    + A    GK  H  + R  +       +AL+ MY+KC  V+ 
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL---KSGTQPDHIVFVGVLTA 370
           +  VF  + + D  SW+S++  Y + G+  K LE +  +    K   + D    + ++++
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+  G +  G Q  H    KH     +     ++ +  R G F  A  +   +  K D  
Sbjct: 430 CSRLGRLRLG-QSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK-DVV 487

Query: 431 LWASLL 436
            W++L+
Sbjct: 488 TWSALI 493



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 33/219 (15%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P+ +   S+I  C    ALE G+ +HSH+K  G +  + I   L+DMY KCG
Sbjct: 511 QMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCG 570

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            +  A+ +FD M ERDV ++N MISG                               Y  
Sbjct: 571 QLGIARKMFDSMLERDVVTWNVMISG-------------------------------YGM 599

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           + + I+AL L+ MM+   N   N  T  ++LSA      +  G+E+   +     + +  
Sbjct: 600 HGEAIQALKLFSMMER-GNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLK 658

Query: 196 VWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            ++ + D+ GK G + EA  +   M ++ D   W  ++G
Sbjct: 659 HYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLG 697



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H      G  P    A+ LV  YS  G    +   F   P PD   W SL+    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
               L     +  SG +P       V +A    G +  G    H+   + GL       A
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVG-AAVHAYSVRFGLLEGDGSVA 146

Query: 402 C---IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               +V + AR G   +A  +  +MP + D   W +++ GC  +G 
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPER-DVVAWTAVISGCVCNGQ 191


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 257/466 (55%), Gaps = 32/466 (6%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L+  L++  +   P      S++       +L  G+ +H +   +GF+  V +S  L+DM
Sbjct: 261 LELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDM 320

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           Y+KCG++                                 AR +FD M  +   SW +MI
Sbjct: 321 YSKCGSVG-------------------------------TARLIFDRMTGKTVVSWNSMI 349

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
            GYV+   P  A+++++ M + +  ++N  T+   L A + +  +  G+ +H  + +   
Sbjct: 350 DGYVQNGDPGAAMEIFQKMMDEQVEMTN-VTVMGALHACADLGDVEQGRFVHKLLDQLEL 408

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
            SD  V ++L  MY KC  ++ A +IF+ +  + +VSW AMI  Y Q GR  E    F +
Sbjct: 409 GSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCK 468

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           +    I+P++FT   V+ A A+ +     K +HG + R   D   F A+ALV MY+KCG 
Sbjct: 469 MQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGA 528

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           V  ++K+F+ M    + +W ++I GY  +G+   ALE FE + K   +P+ + F+ VL+A
Sbjct: 529 VHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSA 588

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+H+GLV++G QYF S+K+ +GL    DHY  +VDLL R+ R +EA D I KMP++P   
Sbjct: 589 CSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAIS 648

Query: 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++ ++LG CRIH N++L ++AA  +F+++P++   +V +ANIYA+A
Sbjct: 649 VFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATA 694



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 216/434 (49%), Gaps = 40/434 (9%)

Query: 26  PSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P +Y  + L++ C  N  L +GK++H  L  +GF   VF    +++MYAKC  + +A  +
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M ERD+  +NT+ISG+ + G                 F  T              AL
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNG-----------------FGKT--------------AL 261

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L   MQ  E    +  T+ S+L AV+ +  LR+G+ IHGY MR GF+S   V +AL DM
Sbjct: 262 ELVLRMQE-EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDM 320

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+  AR IFD+M  + VVSW +MI  Y Q G       +F +++   +     T 
Sbjct: 321 YSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTV 380

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G L+ACAD    E G+ VH  + ++         ++L+ MYSKC  V+ + ++F  +  
Sbjct: 381 MGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQH 440

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             LVSW ++I GYAQNG  ++A++YF  +     +PD    V V+ A     ++ +  ++
Sbjct: 441 KTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQA-KW 499

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H +  +  L         +VD+ A+ G  H A  +   M  +     W +++ G   HG
Sbjct: 500 IHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDER-HVTTWNAMIDGYGTHG 558

Query: 444 NLDLAKRAAEALFE 457
              L K A E LFE
Sbjct: 559 ---LGKAALE-LFE 568



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 182/352 (51%), Gaps = 5/352 (1%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSV 156
           ++S F K GSL +A  +F  +  + +  +  M+ GY R +   +A+  + RM  +    V
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
              FT   +L        LR GKEIH  ++  GF S+    + + +MY KC  + EA ++
Sbjct: 175 VYNFTY--LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           FD+M +RD+V W  +I  Y Q G  +    L   + + G RP++ T   +L A AD  + 
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
            +G+ +HGY  R G++ +   ++ALV MYSKCG+V  ++ +F+ M    +VSW S+I GY
Sbjct: 293 RIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGY 352

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
            QNG P  A+E F+ ++    +  ++  +G L AC   G V++G ++ H + ++  L   
Sbjct: 353 VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSD 411

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
                 ++ + ++  R   A ++   +  K     W +++ G   +G ++ A
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKT-LVSWNAMILGYAQNGRINEA 462



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 132/263 (50%), Gaps = 5/263 (1%)

Query: 179 KEIHGYI---MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           KE+H +I   ++ G  S+ +  + L  ++ K GS++EA ++F  + D+    +  M+  Y
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            +    ++  + F  +   G+RP  + F  +L  C D+A    GK++H  +   G+    
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNV 210

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           FA + +V+MY+KC  VE + K+F+ MP  DLV W ++I+GYAQNG    ALE    + + 
Sbjct: 211 FAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEE 270

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD I  V +L A    G +  G +  H    + G     +    +VD+ ++ G    
Sbjct: 271 GKRPDSITIVSILPAVADVGSLRIG-RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGT 329

Query: 416 AEDVISKMPMKPDKFLWASLLGG 438
           A  +  +M  K     W S++ G
Sbjct: 330 ARLIFDRMTGKT-VVSWNSMIDG 351


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 166/493 (33%), Positives = 259/493 (52%), Gaps = 69/493 (13%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           I+ P+   +  L+  C +  +LE G +VHSH+   GF+  +F+ N L+ +Y+  GN    
Sbjct: 106 IAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGN---- 161

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
                                      L  AR LFDE   RD  S+  MI GY   NQP 
Sbjct: 162 ---------------------------LNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 194

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT--GFDSDEVVWS 198
            AL L+  MQN    + ++FT  ++ S  S +    +GK+IH  + +     DS+ ++ S
Sbjct: 195 SALCLFGEMQN-SGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKS 253

Query: 199 ALSDMYGKCG--------------------------------SINEARQIFDKMVDRDVV 226
           A+ DMY KCG                                 IN AR++F+ M +RDV+
Sbjct: 254 AIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVI 313

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV-HGY 285
           SWTAMI  Y Q G+  E   LF E+   GI+P+  T   VL+ACA   A +LGK++ H Y
Sbjct: 314 SWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQY 373

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN--GMPRPDLVSWTSLIAGYAQNGMPD 343
           +    ++  +   +A++ MY+KCG+++++ ++F   G        + S+IAG AQ+G+ +
Sbjct: 374 IENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGE 433

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
            A+  F  L+ +G +PD + FVGVL AC H+GL+++G + F S+   +G+    +HY C+
Sbjct: 434 TAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCM 493

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLL R G   EA D++ KMP + +  +W +LL  CR HGN+ + + A + L E+E ++ 
Sbjct: 494 VDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHG 553

Query: 464 ATYVTMANIYASA 476
           A YV ++NI A A
Sbjct: 554 ARYVLLSNILADA 566



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 200/403 (49%), Gaps = 41/403 (10%)

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGS---LEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           AQT+ + +  + + S + +IS F+  GS   L+ +R LF ++   + F W  MI GY R 
Sbjct: 30  AQTIVNGLHHQ-IFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRS 88

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
           + P EA+ LY  M     +  N FT   +L++ + +  L  G E+H +I++ GF+SD  V
Sbjct: 89  DNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFV 148

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            +AL  +Y   G++N AR +FD+ + RD+VS+  MI  Y +  + E    LF E+  SGI
Sbjct: 149 RNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGI 208

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHG--YMTRIGYDPYSFAASALVHMYSK------- 307
            P+ FTF  + + C+      +GKQ+H   Y      D      SA+V MY+K       
Sbjct: 209 LPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIA 268

Query: 308 -------------------------CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
                                    CG +  ++K+FN M   D++SWT++I+GY+Q G  
Sbjct: 269 ERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQC 328

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
            +ALE F+ +   G +PD +  V VL+AC   G  D G + +H   E           A 
Sbjct: 329 SEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAA 388

Query: 403 IVDLLARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHG 443
           ++D+ A+ G    A ++  ++   MK   F++ S++ G   HG
Sbjct: 389 VMDMYAKCGSIDSALEIFRRVGKNMKTG-FVFNSMIAGLAQHG 430


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 260/477 (54%), Gaps = 40/477 (8%)

Query: 6   CNQ---RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           CN    R L   L++LH    P    Y  +++ C      E G+KVH+ +   G +  V+
Sbjct: 101 CNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVY 160

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           + N +L MY K G++  A+ +FD M  RD+ S+NTM+SGF K G    A  +F +M +RD
Sbjct: 161 VGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDM-RRD 219

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
            F                               V ++ TL ++LSA   +  L++GKEIH
Sbjct: 220 GF-------------------------------VGDRTTLLALLSACGDVMDLKVGKEIH 248

Query: 183 GYIMRTGFDSDEV----VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           GY++R G +S  V    + +++ DMY  C S++ AR++F+ +  +DVVSW ++I  Y + 
Sbjct: 249 GYVVRNG-ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKC 307

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G   +   LF  ++  G  P+  T   VL AC   +A  LG  V  Y+ + GY       
Sbjct: 308 GDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVG 367

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +AL+ MY+ CG++  + +VF+ MP  +L + T ++ G+  +G   +A+  F  +L  G  
Sbjct: 368 TALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVT 427

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD  +F  VL+AC+H+GLVD+G + F+ +   + +     HY+C+VDLL R+G   EA  
Sbjct: 428 PDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYA 487

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           VI  M +KP++ +W +LL  CR+H N+ LA  +A+ LFE+ P+  + YV ++NIYA+
Sbjct: 488 VIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAA 544



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 193/415 (46%), Gaps = 45/415 (10%)

Query: 24  PSPSIYSS--------LIQFCRQNRALEEGKKVHSHLKSSG-FKPGVFISNCLLDMYAKC 74
           P PS  S+        L+Q    +++L +  ++H+H+ + G  +   +++  L   YA C
Sbjct: 12  PKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVC 71

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G++  AQ                               ++FD++  +++F W +MI GY 
Sbjct: 72  GHMPYAQ-------------------------------HIFDQIVLKNSFLWNSMIRGYA 100

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
             N P  AL LY  M +F     N FT   VL A   +    +G+++H  ++  G + D 
Sbjct: 101 CNNSPSRALFLYLKMLHFGQKPDN-FTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDV 159

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V +++  MY K G +  AR +FD+M+ RD+ SW  M+  + + G     F +F ++ + 
Sbjct: 160 YVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRD 219

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY---SFAASALVHMYSKCGNV 311
           G   +  T   +L+AC D    ++GK++HGY+ R G        F  ++++ MY  C +V
Sbjct: 220 GFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESV 279

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
             ++K+F G+   D+VSW SLI+GY + G   +ALE F  ++  G  PD +  + VL AC
Sbjct: 280 SCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAAC 339

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
                +  G     S   K G          ++ + A  G    A  V  +MP K
Sbjct: 340 NQISALRLGAT-VQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEK 393


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 256/476 (53%), Gaps = 47/476 (9%)

Query: 11  LKEALQILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           L++A+Q+L   S  PS  + +  ++ C    A+ EGK++H H+   GFK   ++ N L++
Sbjct: 41  LRDAVQLLEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVE 100

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY KCG                               SL+ A+++F   P+R+ FSWT M
Sbjct: 101 MYGKCG-------------------------------SLQAAKSVFHITPRRNVFSWTIM 129

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           ++ +      ++AL+L  +M + E    N  T   +L AV+A+  L  G+ +H  I   G
Sbjct: 130 VAAFAHNGHYMDALNLLEIM-DLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCG 188

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249
           F +D  V + L +MY KC S+ +A  +F+ +  R V++WTA++  Y   G   +   +F 
Sbjct: 189 FLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFL 248

Query: 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA----ASALVHMY 305
            +   G+ P   TF  V++ CAD A   +G++VHG +     D  S A     +AL++MY
Sbjct: 249 LMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVI-----DARSEANVCVGNALINMY 303

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-----GTQPD 360
            KC + + ++KVF+ M R D+++W S+IA Y QNG   +ALE ++ + +S     G   D
Sbjct: 304 GKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHD 363

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I F+GVL AC+HAGLV    + + S+   +G   T+    C++DLL R+G   EAE+ I
Sbjct: 364 DITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFI 423

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + MP  PD  +W  LLG C  H +++ A RAA+ +  + P +  +YV ++N+YA A
Sbjct: 424 NSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALA 479



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 140 IEALDLYRMMQNFEN-SVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           +E LDL   +Q  E+ SVS +   L+  L    +   +  GK IH +I+  GF S   + 
Sbjct: 36  LERLDLRDAVQLLEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLC 95

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           + L +MYGKCGS+  A+ +F     R+V SWT M+  +   G   +   L   +   GI 
Sbjct: 96  NLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGIS 155

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           PN+ TF  +L A A  +  + G+ +H  +   G+    F A+ L++MY+KC ++ ++  V
Sbjct: 156 PNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSV 215

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F  +    +++WT+L+A YA NG    AL+ F L+   G +P  + FV V+  C    + 
Sbjct: 216 FESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVF 275

Query: 378 DKGLQYFHSIKEKHG-LTYTADHYACI----VDLLARSGRFHEAEDVISKMPMKPDKFLW 432
             G       +E HG +   ++   C+    +++  +     EA  V   M  K D   W
Sbjct: 276 GIG-------REVHGVIDARSEANVCVGNALINMYGKCASPDEARKVFDAMQRK-DIITW 327

Query: 433 ASLLG 437
            S++ 
Sbjct: 328 NSMIA 332



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 111/244 (45%), Gaps = 15/244 (6%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I++    R L +A  +   ++  S   +++L+     N    +  KV   +   G +P  
Sbjct: 200 INMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTE 259

Query: 62  FISNCLLDMYAKCGNIS------DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
                ++D+   C +I+      +   + D   E +VC  N +I+ + K  S ++AR +F
Sbjct: 260 VTFVTVVDV---CADIAVFGIGREVHGVIDARSEANVCVGNALINMYGKCASPDEARKVF 316

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV----SNKFTLSSVLSAVSA 171
           D M ++D  +W +MI+ Y +     +AL++Y+ MQ    ++     +  T   VL A S 
Sbjct: 317 DAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSH 376

Query: 172 IQCLRLGKEIHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWT 229
              ++   +++  ++   GF    +    L D+ G+ G ++EA +  + M    D   WT
Sbjct: 377 AGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWT 436

Query: 230 AMIG 233
            ++G
Sbjct: 437 ILLG 440


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 250/449 (55%), Gaps = 34/449 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L+  C +++ L  G+++H+ + ++G +  +F++N +L MY KCG + D         
Sbjct: 36  YLDLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMED--------- 86

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY-R 147
                              L +A   F  M +R+  SW A+IS Y + ++  +A+ ++ R
Sbjct: 87  -------------------LSRA---FSGMKRRNIVSWNAVISAYAQNDRSSDAIVIFLR 124

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
           M+   +    +  T +SVL+A +  +  R  K +H   +  GF S  VV +AL +MY K 
Sbjct: 125 ML--LDGIQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKV 182

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           GSI+ ARQ+FD++  +DVVSW+ MI  Y Q G   E   +F  +   GI+ N  TF  V+
Sbjct: 183 GSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVTVV 242

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +AC   A     + +H  +   G +  +   +AL++MY KCG +  +KK+F+ +   D+V
Sbjct: 243 HACVLVARITDARTIHCRIIEAGLESNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDVV 302

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            W++++  YA++G P  AL+ F L+ + G +P+ + FVGVL AC H G V +G  +F S+
Sbjct: 303 VWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASL 362

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
              H L  TA H  C++D+L R+G+  EAE  I++MP+K +   W+  LG CR +G+L+ 
Sbjct: 363 VRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLER 422

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
            KRAAE +FE  P   A Y+T+A++Y  A
Sbjct: 423 GKRAAEKVFEFLPHCRAGYLTLASMYTDA 451


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 252/443 (56%), Gaps = 38/443 (8%)

Query: 38  QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNT 97
           Q + LE G+++H+++  S     V I N ++ MY++CG+I  +  +F  M ERDV ++NT
Sbjct: 334 QLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNT 393

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           M+S F + G         D+                       E L L   MQ  +  + 
Sbjct: 394 MVSAFVQNG--------LDD-----------------------EGLMLVFAMQK-QGFMV 421

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           +  TL+++LS  S ++   +GK+ H Y++R G    E + S L DMY K G I  A+Q+F
Sbjct: 422 DSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQF-EGMDSYLIDMYAKSGLITTAQQLF 480

Query: 218 DKM--VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +K    DRD  +W AMI  Y Q G  EEGFA+F ++I+  +RPNA T A +L AC     
Sbjct: 481 EKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGT 540

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LGKQ+HG+  R   +   F  +AL+ MYSK G +  ++ VF      + V++T++I+ 
Sbjct: 541 IGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISS 600

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y Q+GM ++AL  F  +L SG +PD + FV +L+AC++AGLVD+GL+ F S++ ++ +  
Sbjct: 601 YGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQP 660

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRAAEA 454
           +A+HY C+ D+L R GR  EA + +  +  + + F +W SLLG CRIHG  +L K  A  
Sbjct: 661 SAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANK 720

Query: 455 LFEIEPENPAT--YVTMANIYAS 475
           L E+E  +  T  +V ++NIYA+
Sbjct: 721 LLEMEKGSSLTGYHVLLSNIYAA 743



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 182/340 (53%), Gaps = 5/340 (1%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G ++ AR +FD   +R+   W  MI GYV+ N PIEA+DL+  +   E  V +  T  S 
Sbjct: 269 GCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSA 328

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L+A+S +Q L LG+++H YI+++      V+ +A+  MY +CGSI  + ++F  M++RDV
Sbjct: 329 LTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDV 388

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           V+W  M+  + Q G  +EG  L   + K G   ++ T   +L+  ++  ++E+GKQ H Y
Sbjct: 389 VTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAY 448

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVF--NGMPRPDLVSWTSLIAGYAQNGMPD 343
           + R G   +    S L+ MY+K G +  ++++F  N     D  +W ++IAGY QNG+ +
Sbjct: 449 LIRHGIQ-FEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSE 507

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +    F  +++   +P+ +    +L AC   G +  G Q  H    +  L         +
Sbjct: 508 EGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ-IHGFAIRCFLNRNVFVGTAL 566

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +D+ ++SG    AE+V ++  ++ +   + +++     HG
Sbjct: 567 LDMYSKSGAITYAENVFAE-TLEKNSVTYTTMISSYGQHG 605



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 208/459 (45%), Gaps = 57/459 (12%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  +CN   +   L      + PSP      +SS ++ C Q R+L+ GK +H H+  S F
Sbjct: 76  IGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHF 135

Query: 58  KPGVFISNCLLDMYAKC-------------GNISDAQTLFDEMQERDVCSYNTMISGFTK 104
                + N LL+MY+ C              N    + +FD M++R+V ++NTMI     
Sbjct: 136 GSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMI----- 190

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
                               SW      YV+  + IEA  ++R M           +  +
Sbjct: 191 --------------------SW------YVKTERLIEAFKMFRTMMRM-GIRPTPVSFVN 223

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
           V  AV  +        ++G +++ G  F  D  V S+   MY + G ++ AR+IFD  ++
Sbjct: 224 VFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLE 283

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQ 281
           R+   W  MIG Y Q     E   LF ++++S     +  TF   L A +     ELG+Q
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQ 343

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H Y+ +          +A++ MYS+CG++  S KVF+ M   D+V+W ++++ + QNG+
Sbjct: 344 LHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGL 403

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-DHY 400
            D+ L     + K G   D +    +L+  ++    + G Q  H+   +HG+ +   D Y
Sbjct: 404 DDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQA-HAYLIRHGIQFEGMDSY 462

Query: 401 ACIVDLLARSGRFHEAEDVISKMP-MKPDKFLWASLLGG 438
             ++D+ A+SG    A+ +  K      D+  W +++ G
Sbjct: 463 --LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAG 499



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 174/354 (49%), Gaps = 18/354 (5%)

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           +S   + G   QA +LFD +P+     W  +I G++  N PI+AL  Y  M+   +   +
Sbjct: 44  LSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFD 103

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC----------- 207
            +T SS L A +  + L+LGK +H +++R+ F S  +V+++L +MY  C           
Sbjct: 104 SYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAY 163

Query: 208 --GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
              + +  R++FD M  R+VV+W  MI  Y +  R  E F +F  +++ GIRP   +F  
Sbjct: 164 DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVN 223

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSKCGNVENSKKVFNGMPR 323
           V  A    +  +    ++G + ++G D     F  S+ + MY++ G V+ ++++F+    
Sbjct: 224 VFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLE 283

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQ 382
            +   W ++I GY QN  P +A++ F  +++S     D + F+  LTA +    ++ G Q
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQ 343

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
             H+   K            I+ + +R G    +  V S M ++ D   W +++
Sbjct: 344 -LHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMV 395



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 18/219 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           +++ Q   P+    +S++  C     +  GK++H           VF+   LLDMY+K G
Sbjct: 515 KMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSG 574

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMIS 131
            I+ A+ +F E  E++  +Y TMIS + + G  E+A +LF  M     + D+ ++ A++S
Sbjct: 575 AITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILS 634

Query: 132 GYVRYNQPIEALDLYRMMQ---NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
                    E L +++ M+     + S  +   ++ +L         R+G+ +  Y    
Sbjct: 635 ACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLG--------RVGRVVEAYEFVK 686

Query: 189 GFDSDEVVWSALSDMYGKC---GSINEARQIFDKMVDRD 224
           G   +   +     + G C   G     + + +K+++ +
Sbjct: 687 GLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEME 725


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 235/452 (51%), Gaps = 41/452 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  +++ C +  A  EG+++H  +   G +   F++  L+D+Y+    I  A  L
Sbjct: 163 PNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 222

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M ER++ ++ +MISG+     +  AR LFD  P+RD   W  M+SGY+       A 
Sbjct: 223 FVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAAR 282

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M                                           D + W+ + + 
Sbjct: 283 KLFDTMPY----------------------------------------RDTMSWNTMLNG 302

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           Y   G +    Q+F++M +R+V SW  +IG Y   G   E    F  ++  G + PN  T
Sbjct: 303 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDAT 362

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              VL+ACA   A +LGK VH Y   IG+    +  +AL+ MYSKCG +EN+ +VF  M 
Sbjct: 363 LVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMD 422

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             DL++W S+I G A +G    AL  F  +  +G +PD I F+GVL +CTH GLV++G  
Sbjct: 423 LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTS 482

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF+S+  ++ +    +HY C+VDL  R+G    A + + +MPM+ D  +WA+LLG CRI+
Sbjct: 483 YFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIY 542

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            N+DLA+ A + L  +EP+NPA YV ++NIY 
Sbjct: 543 KNIDLAELALQKLIVLEPKNPANYVLLSNIYG 574



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 12/214 (5%)

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  +L +C   A   L ++V   +   G+    + A  +V  +     + +++ +F+  P
Sbjct: 70  FISLLRSCKTVA---LLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFP 126

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
            P +  W ++  GY  N    + +  F  +     +P+   F  VL +C   G   +G +
Sbjct: 127 DPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG-E 185

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             H    K GL         ++D+ +       A  +   M ++ +   W S++ G  + 
Sbjct: 186 EIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILC 244

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             + LA+R    LF++ PE     V + NI  S 
Sbjct: 245 NRVALARR----LFDLAPERD---VVLWNIMVSG 271


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 276/485 (56%), Gaps = 17/485 (3%)

Query: 6   CNQRRLKEALQILHQISHPSPSI--YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           CNQ  + +AL +L++ +  + ++  Y++LI     N   ++G   +  ++ +G  P  + 
Sbjct: 5   CNQ--MNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYT 62

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             CL+    +   +   + +   ++    + D+   ++++S + K   +++AR LFDE+P
Sbjct: 63  FPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIP 122

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
            RD   W +M++GY +  +  EAL + R M   E  + +KFT+S VLS  +       G+
Sbjct: 123 DRDVVLWNSMVNGYAQIGRFDEALGVCREMSQ-EGVLMSKFTVSGVLSVFAGRGDFDNGR 181

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
            +HG++++ GFDS   V +AL DMYGKC  + +A +IF+ M ++D+ SW +++       
Sbjct: 182 LVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCS 241

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY-------D 292
             +    LF  ++  G++ +  T   +L AC+  AA   G+++HGYM   G+       +
Sbjct: 242 DHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESEN 301

Query: 293 PYSFAA-SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
            Y+    +AL+ MY+KCG++ ++  VF  M   D  SW  +I GY  +G  ++AL  F  
Sbjct: 302 MYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSD 361

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           + KSG +P+ I FVGVL AC+HAG + +G+++   ++ KHG+  T  HY C++D+L R+G
Sbjct: 362 MCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAG 421

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
           +  EA  +   MP++ +  +W +LL  C+++GN+DLA+ AA+ +FE+ P +   YV M+N
Sbjct: 422 QLEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSN 481

Query: 472 IYASA 476
            Y +A
Sbjct: 482 AYVAA 486



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 8/254 (3%)

Query: 203 MYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
           MY KC  +N+A  + ++  D  R+V ++ A+I  +   G  ++G   + E+ ++G+ P+ 
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +TF  ++    +       K++HG + ++G D   +  S+LV  Y K   ++ ++++F+ 
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDE 120

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           +P  D+V W S++ GYAQ G  D+AL     + + G         GVL+     G  D G
Sbjct: 121 IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNG 180

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-- 438
            +  H    K G          ++D+  +     +A ++   M  K D F W S+L    
Sbjct: 181 -RLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEK-DIFSWNSILSANE 238

Query: 439 -CRIH-GNLDLAKR 450
            C  H G L L  R
Sbjct: 239 LCSDHDGTLRLFDR 252


>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/474 (34%), Positives = 260/474 (54%), Gaps = 42/474 (8%)

Query: 11  LKEALQILHQISH----PSPSIYSSLIQFCRQNRAL--EEGKKVHSHLKSSG---FKPGV 61
           L EALQ+L         P P + +S++  C +   L    G+++H  +   G    +  V
Sbjct: 148 LVEALQMLKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSV 207

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+S   +D Y +CG+                              SL  AR++FDEM  +
Sbjct: 208 FLSTAFVDFYFRCGD------------------------------SL-MARSVFDEMEVK 236

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           +  SWTA+ISG         AL  YR MQ  E    N+ TL ++L+A +    ++ GKEI
Sbjct: 237 NEVSWTAVISGCANNQDYDVALACYREMQ-VEGVSPNRVTLIALLAACARPGFVKYGKEI 295

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCG-SINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           HGY  R GFDS      AL  +Y +CG S++ A +IF+    RDVV W+++IG Y + G 
Sbjct: 296 HGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGE 355

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            ++   LF+++      PN  T   V++AC + ++ + G  +HGY+ + G     F  +A
Sbjct: 356 SDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNA 415

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L++MY+KCG++++S+K+F  MP  D V+W S+I+ Y  +G  ++AL++F  + + G + D
Sbjct: 416 LINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLD 475

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            + F+ VL+AC HAGLV +G Q F  +     +  T +HYAC++DL  RSG+  +A +++
Sbjct: 476 AVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEIL 535

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
             MPMKP   +W+SL+  C++HG LD+A+  +  L   EP N A+Y  ++ I+A
Sbjct: 536 RTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEPNNAASYTLLSMIHA 589



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 184/354 (51%), Gaps = 9/354 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++IS + K   +E AR +FD MP RD  +W +MI+ Y++    +EAL + +    F   
Sbjct: 105 NSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFY-FLGF 163

Query: 156 VSNKFTLSSVLSAVSAIQCL--RLGKEIHGYIM---RTGFDSDEVVWSALSDMYGKCGSI 210
           +     L+S++S       L  R+G++IHG ++   R        + +A  D Y +CG  
Sbjct: 164 LPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDS 223

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             AR +FD+M  ++ VSWTA+I         +   A + E+   G+ PN  T   +L AC
Sbjct: 224 LMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAAC 283

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG-NVENSKKVFNGMPRPDLVSW 329
           A     + GK++HGY  R G+D     + AL+++Y +CG ++  ++++F G    D+V W
Sbjct: 284 ARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLW 343

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           +S+I  YA+ G  DKAL+ F  +    T+P+++  + V++ACT+      G    H    
Sbjct: 344 SSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHG-GVIHGYIL 402

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           K G+ ++      ++++ A+ G   ++  +  +MP + D   W S++    +HG
Sbjct: 403 KFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSR-DSVTWNSMISAYGLHG 455



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 156/352 (44%), Gaps = 24/352 (6%)

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           Y+Q ++         +  NS+   F L SV+ A S       G ++H     TG  +D +
Sbjct: 45  YHQTLQFFTQLHFSAHHFNSI--PFVLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPI 102

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +++  MY K   I  ARQ+FD M  RD ++W +MI  Y Q G   E   +  +    G
Sbjct: 103 VSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLG 162

Query: 256 IRPNAFTFAGVLNACADHA--AEELGKQVHGYMT---RIGYDPYSFAASALVHMYSKCGN 310
             P     A +++ C         +G+Q+HG +    RI      F ++A V  Y +CG+
Sbjct: 163 FLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGD 222

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
              ++ VF+ M   + VSWT++I+G A N   D AL  +  +   G  P+ +  + +L A
Sbjct: 223 SLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAA 282

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC------IVDLLARSGR-FHEAEDVISKM 423
           C   G V  G       KE HG  +     +C      ++ L    G+  H AE +    
Sbjct: 283 CARPGFVKYG-------KEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGS 335

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            ++ D  LW+S++G     G  D A +    +   E E    YVT+  + ++
Sbjct: 336 SLR-DVVLWSSIIGSYARRGESDKALKLFNKMRTEETE--PNYVTLLAVISA 384


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 247/463 (53%), Gaps = 38/463 (8%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++L ++  P  + ++ L   C +   ++ G ++H      G     F+ + L+D+YA+CG
Sbjct: 148 RMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCG 207

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            +                               E AR +F  +  RD   W  MIS Y  
Sbjct: 208 LV-------------------------------ENARRVFLVVQHRDLVVWNVMISCYAL 236

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
              P EA  ++ +M+ ++ +  ++FT S++LS   +++    GK++HG+I+R  FDSD +
Sbjct: 237 NCLPEEAFVMFNLMR-WDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVL 295

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG---FALFSELI 252
           V SAL +MY K  +I +A ++FD MV R+VV+W  +I  Y   G R EG     L  E++
Sbjct: 296 VASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGY---GNRREGNEVMKLLREML 352

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           + G  P+  T +  ++ C   +A     Q H +  +  +  +   A++L+  YSKCG++ 
Sbjct: 353 REGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSIT 412

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
           ++ K F     PDLVSWTSLI  YA +G+  +A E FE +L  G  PD I F+GVL+AC+
Sbjct: 413 SACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACS 472

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           H GLV KGL YF+ +   + +   + HY C+VDLL R G  +EA + +  MPM+ +    
Sbjct: 473 HCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTL 532

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            + +  C +H N+ LAK AAE LF IEPE    Y  M+NIYAS
Sbjct: 533 GAFVASCNLHANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYAS 575



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 195/414 (47%), Gaps = 30/414 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L EGK++H+HL   GF   + + N +L +Y KC    DA+ LF+E+  R+V S+N +I G
Sbjct: 66  LPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRG 125

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
               G   +     ++  Q+  FS+                    RM+   E  V +  T
Sbjct: 126 IVGCGDANE-----NDSNQQQCFSY------------------FKRML--LELVVPDSTT 160

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
            + +         + +G ++H + ++ G D D  V S L D+Y +CG +  AR++F  + 
Sbjct: 161 FNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQ 220

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            RD+V W  MI  Y      EE F +F+ +   G   + FTF+ +L+ C      + GKQ
Sbjct: 221 HRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQ 280

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VHG++ R+ +D     ASAL++MY+K  N+ ++ ++F+ M   ++V+W ++I GY     
Sbjct: 281 VHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRRE 340

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            ++ ++    +L+ G  PD +     ++ C +   + + +Q  H+   K           
Sbjct: 341 GNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQA-HAFAVKSSFQEFLSVAN 399

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
            ++   ++ G    A     ++  +PD   W SL+     HG   LAK A E  
Sbjct: 400 SLISAYSKCGSITSACKCF-RLTREPDLVSWTSLINAYAFHG---LAKEATEVF 449



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           A  L   A  A    GKQ+H ++ + G+       + ++ +Y KC   ++++K+F  +  
Sbjct: 54  ANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSV 113

Query: 324 PDLVSWTSLIAGYAQNGMPD-------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
            ++VSW  LI G    G  +       +   YF+ +L     PD   F G+   C     
Sbjct: 114 RNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHD 173

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           +D G Q  H    K GL       + +VDL A+ G    A  V
Sbjct: 174 IDMGFQ-LHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRV 215



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 41/221 (18%)

Query: 7   NQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N+R   E +++L ++      P     SS I  C    A+ E  + H+    S F+  + 
Sbjct: 337 NRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLS 396

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           ++N L+  Y+KCG+I+ A   F   +E D+ S+ ++I+ +   G  ++A  +F++M    
Sbjct: 397 VANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKM---- 452

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                 +  G                       + ++ +   VLSA S   C  + K +H
Sbjct: 453 ------LSCGI----------------------IPDQISFLGVLSACS--HCGLVTKGLH 482

Query: 183 GYIMRTG---FDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
            + + T       D   ++ L D+ G+ G INEA +    M
Sbjct: 483 YFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSM 523


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 225/376 (59%), Gaps = 2/376 (0%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K G L+ AR+LF EMP R+  +W A+++  V   +P+E ++ Y  ++     + N  +
Sbjct: 164 YFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLRE-AGGLPNVVS 222

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
             +  +A +    L LG++ HG++++ GF+ D  V +++ D YGKC    +AR +FD M 
Sbjct: 223 ACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMG 282

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R+ VSW +M+  Y Q G  EE FA +    +SG  P  F  +  L  CA      LG+ 
Sbjct: 283 VRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA 342

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    R   D   F ASALV MY KCG VE+++++F   P+ +LV+W ++I GYA  G 
Sbjct: 343 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 402

Query: 342 PDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              AL  F+ +++SG T P++I  V V+T+C+  GL   G + F +++E+ G+    +HY
Sbjct: 403 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 462

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           AC+VDLL R+G   +A +VI  MPM+P   +W +LLG C++HG  +L + AAE LFE++P
Sbjct: 463 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 522

Query: 461 ENPATYVTMANIYASA 476
           ++   +V ++N++ASA
Sbjct: 523 QDSGNHVLLSNMFASA 538



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 172/360 (47%), Gaps = 8/360 (2%)

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL-SAVSAIQCLRL 177
           P     S+TA ISG  ++ +P+ AL  +  M        N FT  S   +A SA     +
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRL-GLRPNDFTFPSAFKAAASAPPRSTI 136

Query: 178 GKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           G +IH   +R G+   D  V  A  DMY K G +  AR +F +M +R+VV+W A++    
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 196

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
            +GR  E    +  L ++G  PN  +     NACA      LG+Q HG++ + G++    
Sbjct: 197 LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS 256

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             +++V  Y KC     ++ VF+GM   + VSW S++A YAQNG  ++A   +    +SG
Sbjct: 257 VLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSG 316

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
            +P   +    LT C  AGL+   L +  H++  +  +       + +VD+  + G   +
Sbjct: 317 EEPTDFMVSSALTTC--AGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVED 374

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           AE +  + P + +   W +++GG    G+   A    + +     E    Y+T+ N+  S
Sbjct: 375 AEQIFYETPQR-NLVTWNAMIGGYAHIGDAQNALLVFDDMIR-SGETAPNYITLVNVITS 432



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 151/320 (47%), Gaps = 37/320 (11%)

Query: 26  PSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P++ S+   F  C     L  G++ H  +   GF+  V + N ++D Y KC     A+ +
Sbjct: 218 PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAV 277

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  R+  S+ +M++ + + G+ E+A              + A +       +P +  
Sbjct: 278 FDGMGVRNSVSWCSMVAAYAQNGAEEEA--------------FAAYLGARRSGEEPTD-- 321

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                           F +SS L+  + +  L LG+ +H   +R+  D++  V SAL DM
Sbjct: 322 ----------------FMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDM 365

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           YGKCG + +A QIF +   R++V+W AMIG Y   G  +    +F ++I+SG   PN  T
Sbjct: 366 YGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYIT 425

Query: 263 FAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
              V+ +C+     + G ++   M  R G +P +   + +V +  + G  E + +V  GM
Sbjct: 426 LVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGM 485

Query: 322 P-RPDLVSWTSLIAGYAQNG 340
           P RP +  W +L+     +G
Sbjct: 486 PMRPSISVWGALLGACKMHG 505



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 5/280 (1%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS-DEVVWSALSDMYGKCGSINEARQIFDKM 220
           L++   +  A +  RLG+  H   +R    +    + + L ++Y K      A       
Sbjct: 18  LAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASD 77

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE-LG 279
               VVS+TA I    Q GR     + F+ +++ G+RPN FTF     A A       +G
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIG 137

Query: 280 KQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            Q+H    R GY P   F + A + MY K G ++ ++ +F  MP  ++V+W +++     
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +G P + +E +  L ++G  P+ +       AC  A  +  G Q FH    K G      
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQ-FHGFVVKCGFEMDVS 256

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
               +VD   +     +A  V   M ++ +   W S++  
Sbjct: 257 VLNSMVDFYGKCRCAGKARAVFDGMGVR-NSVSWCSMVAA 295



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 43/228 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + SS +  C     L  G+ +H+    S     +F+++ L+DMY KCG + DA+ +
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F E  +R++ ++N MI G+   G  + A  +FD+M               +R  +     
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDM---------------IRSGE----- 418

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM------RTGFDSDEVVW 197
                      +  N  TL +V+++     C R G    GY +      R G +     +
Sbjct: 419 -----------TAPNYITLVNVITS-----CSRGGLTKDGYELFETMRERFGIEPRTEHY 462

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEG 244
           + + D+ G+ G   +A ++   M  R  +S W A++G     G+ E G
Sbjct: 463 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELG 510


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 262/458 (57%), Gaps = 15/458 (3%)

Query: 29  YSSLI-QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++SLI  +CR   A E+  ++   ++ SG +P   + +CLL        +   +T    +
Sbjct: 284 WTSLIGAYCRAGHA-EKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342

Query: 88  QERD----VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
             R+    V   N +IS + K   ++ A  +F  + QRD  SW++M+  Y +    ++ L
Sbjct: 343 VRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCL 402

Query: 144 DLYRMMQ-----NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           +LYR MQ      FE   ++  ++ S  S +     LRLG+  H Y ++     +  V +
Sbjct: 403 ELYREMQFRDKDEFEYDTNSLISIISSCSRLGR---LRLGQSAHCYSIKHLAGENSSVAN 459

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL  MYG+CG+ + AR+IF  +  +DVV+W+A+I  Y   G  ++   L+ +++  G++P
Sbjct: 460 ALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKP 519

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N+ T   V+++CA+ AA E G+ +H ++  +G +      +ALV MY KCG +  ++K+F
Sbjct: 520 NSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMF 579

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + M   D+V+W  +I+GY  +G   +AL+ F ++ +   +P+ + F+ +L+AC HAGLVD
Sbjct: 580 DSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVD 639

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           KG + F  + E++ L     HYAC+VDLL +SG   EAEDV+S MP++PD  +W +LLG 
Sbjct: 640 KGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGA 698

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C++H N ++  R A+  F  +PEN   Y+ M+N Y SA
Sbjct: 699 CKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSA 736



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 207/426 (48%), Gaps = 15/426 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS----- 78
           P   +++SL++   +          H  +++SG +P  F +  +    A+ G +      
Sbjct: 70  PDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAV 129

Query: 79  DAQTLFDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
            A ++   + E D  V   ++++  + + GS+  A  LFDEMP+RD  +WTA+ISG V  
Sbjct: 130 HAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCN 189

Query: 137 NQPIEALD-LYRMMQNFENSVS--NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
            Q  E L  L RM+++  +  +  N  T+ S L A   +  L +G  +HG+ ++ G    
Sbjct: 190 GQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHC 249

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V S+L  MY KC S  +AR +F ++ ++D+VSWT++IG Y + G  E+   LF  + +
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           SG++P+    + +L    + A    GK  H  + R  +       +AL+ MY+KC  V+ 
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL---KSGTQPDHIVFVGVLTA 370
           +  VF  + + D  SW+S++  Y + G+  K LE +  +    K   + D    + ++++
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+  G +  G Q  H    KH     +     ++ +  R G F  A  +   +  K D  
Sbjct: 430 CSRLGRLRLG-QSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK-DVV 487

Query: 431 LWASLL 436
            W++L+
Sbjct: 488 TWSALI 493



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 33/219 (15%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P+ +   S+I  C    ALE G+ +HSH+K  G +  + I   L+DMY KCG
Sbjct: 511 QMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCG 570

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            +  A+ +FD M ERDV ++N MISG                               Y  
Sbjct: 571 QLGIARKMFDSMLERDVVTWNVMISG-------------------------------YGM 599

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           + + I+AL L+ MM+   N   N  T  ++LSA      +  G+E+   +     + +  
Sbjct: 600 HGEAIQALKLFSMMER-GNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLK 658

Query: 196 VWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            ++ + D+ GK G + EA  +   M ++ D   W  ++G
Sbjct: 659 HYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLG 697


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 259/471 (54%), Gaps = 40/471 (8%)

Query: 12  KEALQILHQISH--PSPSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+++   +S     P +Y  SS++  C    AL  G +VH++   +      +++N L
Sbjct: 332 KEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSL 391

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKC  ++DA                               R +FD     D   + 
Sbjct: 392 IDMYAKCDCLTDA-------------------------------RKVFDIFAAADVVLFN 420

Query: 128 AMISGYVRYNQPIE---ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           AMI GY R     E   AL+++R M+ F     +  T  S+L A +++  L L K+IHG 
Sbjct: 421 AMIEGYSRLGTQWELHEALNIFRDMR-FRLIRPSLLTFVSLLRASASLTSLGLSKQIHGL 479

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           + + G + D    SAL D+Y  C  + ++R +FD+M  +D+V W +M   Y Q+   EE 
Sbjct: 480 MFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEA 539

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF EL  S  RP+ FTFA ++ A  + A+ +LG++ H  + + G +   +  +AL+ M
Sbjct: 540 LNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDM 599

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG+ E++ K F+     D+V W S+I+ YA +G   KAL+  E ++  G +P++I F
Sbjct: 600 YAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITF 659

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL+AC+HAGLV+ GL+ F  +  + G+    +HY C+V LL R+GR ++A ++I KMP
Sbjct: 660 VGVLSACSHAGLVEDGLKQFE-LMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMP 718

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            KP   +W SLL GC   GN++LA+ AAE     +P++  ++  ++NIYAS
Sbjct: 719 TKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYAS 769



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 222/471 (47%), Gaps = 47/471 (9%)

Query: 14  ALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           +LQ+ +Q+      P   I S+++  C     LE GK++H+H+   G +    + N L+D
Sbjct: 233 SLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLID 292

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
            Y KCG +  A  LF+ M  +++ S+ T++SG+ K  +L +                   
Sbjct: 293 SYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGY-KQNALHK------------------- 332

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
                      EA++L+  M  F     + +  SS+L++ +++  L  G ++H Y ++  
Sbjct: 333 -----------EAMELFTSMSKF-GLKPDMYACSSILTSCASLHALGFGTQVHAYTIKAN 380

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR---EEGFA 246
             +D  V ++L DMY KC  + +AR++FD     DVV + AMI  Y + G +    E   
Sbjct: 381 LGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALN 440

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F ++    IRP+  TF  +L A A   +  L KQ+HG M + G +   FA SAL+ +YS
Sbjct: 441 IFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYS 500

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
            C  +++S+ VF+ M   DLV W S+ AGY Q    ++AL  F  L  S  +PD   F  
Sbjct: 501 NCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFAN 560

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           ++TA  +   V  G Q FH    K GL         ++D+ A+ G   +A         +
Sbjct: 561 MVTAAGNLASVQLG-QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASR 619

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
            D   W S++     HG    A +  E +    IEP     Y+T   + ++
Sbjct: 620 -DVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEP----NYITFVGVLSA 665



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 209/422 (49%), Gaps = 43/422 (10%)

Query: 24  PSPSIYSSLIQFCR--QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           P+  I SS IQ C     R      ++ S L  SGF   V++   L+D Y          
Sbjct: 144 PNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFY---------- 193

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                 K G+++ AR +FD +P++   +WT MISG V+  +   
Sbjct: 194 ---------------------LKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYV 232

Query: 142 ALDL-YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           +L L Y++M+  +N V + + LS+VLSA S +  L  GK+IH +I+R G + D  + + L
Sbjct: 233 SLQLFYQLME--DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVL 290

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            D Y KCG +  A ++F+ M +++++SWT ++  Y Q    +E   LF+ + K G++P+ 
Sbjct: 291 IDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDM 350

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +  + +L +CA   A   G QVH Y  +      S+  ++L+ MY+KC  + +++KVF+ 
Sbjct: 351 YACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDI 410

Query: 321 MPRPDLVSWTSLIAGYAQNGMP---DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
               D+V + ++I GY++ G      +AL  F  +     +P  + FV +L A   A L 
Sbjct: 411 FAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA--SASLT 468

Query: 378 DKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
             GL +  H +  K+GL       + ++D+ +      ++  V  +M +K D  +W S+ 
Sbjct: 469 SLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMF 527

Query: 437 GG 438
            G
Sbjct: 528 AG 529



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 180/336 (53%), Gaps = 9/336 (2%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E D    N +I+ +++ G +  AR +F++MP+R+  SW+ M+S    +    E+L ++  
Sbjct: 76  ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135

Query: 149 MQNFENSVSNKFTLSSVLSAVSAI--QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
                    N++ LSS + A S +  +   +  ++  +++++GFD D  V + L D Y K
Sbjct: 136 FWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLK 195

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G+I+ AR +FD + ++  V+WT MI    + GR      LF +L++  + P+ +  + V
Sbjct: 196 DGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTV 255

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L+AC+     E GKQ+H ++ R G +  +   + L+  Y KCG V  + K+FNGMP  ++
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFH 385
           +SWT+L++GY QN +  +A+E F  + K G +PD      +LT+C     +  G Q + +
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAY 375

Query: 386 SIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDV 419
           +IK   G     D Y    ++D+ A+     +A  V
Sbjct: 376 TIKANLG----NDSYVTNSLIDMYAKCDCLTDARKV 407



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 165/341 (48%), Gaps = 37/341 (10%)

Query: 5   LCNQRRLKEALQILH----QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           L  Q  L EAL I      ++  PS   + SL++      +L   K++H  +   G    
Sbjct: 429 LGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLD 488

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           +F  + L+D+Y+ C  + D++ +FDEM+ +D+  +N+M +G+ +    E+A NLF E+  
Sbjct: 489 IFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL-- 546

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                                                ++FT +++++A   +  ++LG+E
Sbjct: 547 ------------------------------QLSRERPDEFTFANMVTAAGNLASVQLGQE 576

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
            H  +++ G + +  + +AL DMY KCGS  +A + FD    RDVV W ++I  Y   G 
Sbjct: 577 FHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGE 636

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            ++   +  +++  GI PN  TF GVL+AC+     E G +    M R G +P +     
Sbjct: 637 GKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVC 696

Query: 301 LVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
           +V +  + G +  ++++   MP +P  + W SL++G A+ G
Sbjct: 697 MVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAG 737



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 5/261 (1%)

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +HG I+  G + D  + + L ++Y + G +  AR++F+KM +R++VSW+ M+      G 
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 241 REEGFALFSELIKS-GIRPNAFTFAGVLNACA--DHAAEELGKQVHGYMTRIGYDPYSFA 297
            EE   +F E  ++    PN +  +  + AC+  D     +  Q+  ++ + G+D   + 
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            + L+  Y K GN++ ++ VF+ +P    V+WT++I+G  + G    +L+ F  L++   
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD  +   VL+AC+    ++ G Q  H+   ++GL   A     ++D   + GR   A 
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQ-IHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304

Query: 418 DVISKMPMKPDKFLWASLLGG 438
            + + MP K +   W +LL G
Sbjct: 305 KLFNGMPNK-NIISWTTLLSG 324



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 33/237 (13%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N+  L   L++      P    +++++       +++ G++ H  L   G +   +I+N 
Sbjct: 536 NEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNA 595

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           LLDMYAKCG+  DA   FD    RDV  +N++IS +   G  ++A  + ++M        
Sbjct: 596 LLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKM-------- 647

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                M +  E    N  T   VLSA S    +  G +    ++
Sbjct: 648 ---------------------MSEGIE---PNYITFVGVLSACSHAGLVEDGLKQFELML 683

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD-VVSWTAMIGRYFQEGRRE 242
           R G + +   +  +  + G+ G +N+AR++ +KM  +   + W +++    + G  E
Sbjct: 684 RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVE 740



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VHG +   G +  ++ ++ L+++YS+ G +  ++KVF  MP  +LVSW+++++    +G+
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 342 PDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKG---LQYFHSIKEKHGLTYTA 397
            +++L  F E        P+  +    + AC+  GL  +G   +    S   K G     
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACS--GLDGRGRWMVFQLQSFLVKSGFDRDV 183

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
                ++D   + G    A  V   +P K     W +++ GC
Sbjct: 184 YVGTLLIDFYLKDGNIDYARLVFDALPEK-STVTWTTMISGC 224


>gi|125563707|gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indica Group]
          Length = 810

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 260/468 (55%), Gaps = 37/468 (7%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R ++   ++ HQ   P+   Y+S+  F   N ++E G ++HS     GF  G+ + + L 
Sbjct: 355 RSVQLLRRMFHQGLRPNDKCYASV--FSSVN-SIEFGGQLHSSAIKEGFIHGILVGSALS 411

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY++C N+ D              SY                  +F+EM +RD  SWTA
Sbjct: 412 TMYSRCDNVQD--------------SYK-----------------VFEEMQERDGVSWTA 440

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           M++G+  +   +EA   +R M   +    +  +L+++LSA +  +CL  GKE+HG+ +R 
Sbjct: 441 MVAGFATHGHSVEAFLTFRNMI-LDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRV 499

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
            +     +      MY KC  +  AR+IFD    +D V W++MI  Y   G  EE  +LF
Sbjct: 500 -YGETTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLF 558

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             ++ + IR +++  + +L+ CAD A     K +HGY  + G       +S+LV +YS+ 
Sbjct: 559 QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRS 618

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GN+++S+KVF+ +  PDLV+WT++I GYAQ+G    AL  F+L+++ G +PD +V V VL
Sbjct: 619 GNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVL 678

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+  GLV++G  YF+S++  +G+     HY C+VDLL RSGR  EA+  +  MPMKPD
Sbjct: 679 SACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPD 738

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W++L+  CR+H +  L +     + E   ++  ++ T++NI A++
Sbjct: 739 LMVWSTLVAACRVHDDTVLGRFVENKIREGNYDS-GSFATLSNILANS 785



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 228/506 (45%), Gaps = 81/506 (16%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+   YS  +  C     L  G+ VH  +     +  VF+   L++MYAKCG++  A  
Sbjct: 167 EPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMR 226

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQ 138
            F  M  R+V S+ T I+GF +      A  L  EM +     + ++ T+++    + + 
Sbjct: 227 EFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSM 286

Query: 139 PIEALDLYRMMQNFE-------------------------------NSVSNKFTLSSVLS 167
             EA  ++ M+   E                                +VSN+   S+ +S
Sbjct: 287 VREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFIS 346

Query: 168 AVS------AIQCLR-------------------------LGKEIHGYIMRTGFDSDEVV 196
            VS      ++Q LR                          G ++H   ++ GF    +V
Sbjct: 347 GVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILV 406

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            SALS MY +C ++ ++ ++F++M +RD VSWTAM+  +   G   E F  F  +I  G 
Sbjct: 407 GSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGF 466

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  +   +L+AC        GK+VHG+  R+ Y   +F     + MYSKC  V+ +++
Sbjct: 467 KPDHVSLTAILSACNRSECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARR 525

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F+  P  D V W+S+I+GYA NG  ++A+  F+L++ +  + D  +   +L+ C     
Sbjct: 526 IFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCA---- 581

Query: 377 VDKGLQYF----HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
            D    ++    H    K G+       + +V + +RSG   ++  V  ++ + PD   W
Sbjct: 582 -DIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISV-PDLVAW 639

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEI 458
            +++ G   HG    + + A A+F++
Sbjct: 640 TTIIDGYAQHG----SSQNALAMFDL 661



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 8/348 (2%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           M+    K G L  A  +F +        W A +SG VR  +   A++++R M  + +   
Sbjct: 110 MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMV-WGSCEP 168

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N FT S  LSA +A + L +G+ +HG ++R   + D  V ++L +MY KCG +  A + F
Sbjct: 169 NSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREF 228

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            +M  R+VVSWT  I  + Q+        L  E++++G+  N +T   +L ACA  +   
Sbjct: 229 WRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVR 288

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS-WTSLIAGY 336
              Q+HG + +           AL+  Y+  G +E S+KVF         S W++ I+G 
Sbjct: 289 EASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGV 348

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           + + +  ++++    +   G +P+   +  V ++      ++ G Q  HS   K G  + 
Sbjct: 349 SNHSLL-RSVQLLRRMFHQGLRPNDKCYASVFSSVNS---IEFGGQ-LHSSAIKEGFIHG 403

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               + +  + +R     ++  V  +M  + D   W +++ G   HG+
Sbjct: 404 ILVGSALSTMYSRCDNVQDSYKVFEEMQER-DGVSWTAMVAGFATHGH 450



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 17/275 (6%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++++    + G   +  V + + D+  K G + +A ++F        V W A +    + 
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL--GKQVHGYMTRIGYDPYSF 296
           G       +F +++     PN+FT++G L+ACA  A EEL  G+ VHG + R   +   F
Sbjct: 149 GEGGLAVEMFRDMVWGSCEPNSFTYSGALSACA--AGEELSVGRAVHGLVLRRDPEYDVF 206

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             ++LV+MY+KCG++  + + F  MP  ++VSWT+ IAG+ Q+  P  A+     ++++G
Sbjct: 207 VGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNG 266

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARS----- 410
              +      +L AC    +V +  Q        HG+    + Y  C+V     S     
Sbjct: 267 VAINKYTATSILLACAQMSMVREASQI-------HGMVLKTEMYLDCVVKEALISTYTNF 319

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           G    +E V  +     ++ +W++ + G   H  L
Sbjct: 320 GFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLL 354



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 2/181 (1%)

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+ F++   L ACA   A  L +QV+    + G    ++  + +V + +K G + ++ +V
Sbjct: 67  PSQFSYGNALAACARAPAPALAEQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRV 126

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F        V W + ++G  +NG    A+E F  ++    +P+   + G L+AC     +
Sbjct: 127 FADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEEL 186

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             G +  H +  +    Y       +V++ A+ G    A     +MP++ +   W + + 
Sbjct: 187 SVG-RAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVR-NVVSWTTAIA 244

Query: 438 G 438
           G
Sbjct: 245 G 245


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 262/458 (57%), Gaps = 15/458 (3%)

Query: 29  YSSLI-QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++SLI  +CR   A E+  ++   ++ SG +P   + +CLL        +   +T    +
Sbjct: 284 WTSLIGAYCRAGHA-EKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342

Query: 88  QERD----VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
             R+    V   N +IS + K   ++ A  +F  + QRD  SW++M+  Y +    ++ L
Sbjct: 343 VRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCL 402

Query: 144 DLYRMMQ-----NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           +LYR MQ      FE   ++  ++ S  S +     LRLG+  H Y ++     +  V +
Sbjct: 403 ELYREMQFRDKDEFEYDTNSLISIISSCSRLGR---LRLGQSAHCYSIKHLAGENSSVAN 459

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           AL  MYG+CG+ + AR+IF  +  +DVV+W+A+I  Y   G  ++   L+ +++  G++P
Sbjct: 460 ALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKP 519

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N+ T   V+++CA+ AA E G+ +H ++  +G +      +ALV MY KCG +  ++K+F
Sbjct: 520 NSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMF 579

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + M   D+V+W  +I+GY  +G   +AL+ F ++ +   +P+ + F+ +L+AC HAGLVD
Sbjct: 580 DSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVD 639

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           KG + F  + E++ L     HYAC+VDLL +SG   EAEDV+S MP++PD  +W +LLG 
Sbjct: 640 KGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGA 698

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C++H N ++  R A+  F  +PEN   Y+ M+N Y SA
Sbjct: 699 CKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSA 736



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 207/426 (48%), Gaps = 15/426 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS----- 78
           P   +++SL++   +          H  +++SG +P  F +  +    A+ G +      
Sbjct: 70  PDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAV 129

Query: 79  DAQTLFDEMQERD--VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
            A ++   + E D  V   ++++  + + GS+  A  LFDEMP+RD  +WTA+ISG V  
Sbjct: 130 HAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCN 189

Query: 137 NQPIEALD-LYRMMQNFEN--SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
            Q  E L  L RM+++  +  +  N  T+ S L A   +  L +G  +HG+ ++ G    
Sbjct: 190 GQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHC 249

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             V S+L  MY KC S  +AR +F ++ ++D+VSWT++IG Y + G  E+   LF  + +
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
           SG++P+    + +L    + A    GK  H  + R  +       +AL+ MY+KC  V+ 
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL---KSGTQPDHIVFVGVLTA 370
           +  VF  + + D  SW+S++  Y + G+  K LE +  +    K   + D    + ++++
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C+  G +  G Q  H    KH     +     ++ +  R G F  A  +   +  K D  
Sbjct: 430 CSRLGRLRLG-QSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK-DVV 487

Query: 431 LWASLL 436
            W++L+
Sbjct: 488 TWSALI 493



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 33/219 (15%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P+ +   S+I  C    ALE G+ +HSH+K  G +  + I   L+DMY KCG
Sbjct: 511 QMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCG 570

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            +  A+ +FD M ERDV ++N MISG                               Y  
Sbjct: 571 QLGIARKMFDSMLERDVVTWNVMISG-------------------------------YGM 599

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
           + + I+AL L+ MM+   N   N  T  ++LSA      +  G+E+   +     + +  
Sbjct: 600 HGEAIQALKLFSMMER-GNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLK 658

Query: 196 VWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            ++ + D+ GK G + EA  +   M ++ D   W  ++G
Sbjct: 659 HYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLG 697



 Score = 38.5 bits (88), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H      G  P    A+ LV  YS  G    +   F   P PD   W SL+    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
               L     +  SG +P       V +A    G +  G    H+   + GL       A
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVG-AAVHAYSVRFGLLEGDGSVA 146

Query: 402 C---IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               +V + AR G   +A  +  +MP + D   W +++ GC  +G 
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPER-DVVAWTAVISGCVCNGQ 191


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 240/450 (53%), Gaps = 33/450 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y+++++ C  +RA+  G+++H+ L  SG      ++  L+D+YA CG +S          
Sbjct: 66  YATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVS---------- 115

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYR 147
                                 AR LFDEMP + N F W  +I  Y R      A++LYR
Sbjct: 116 ---------------------VARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYR 154

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M    +   + FT   VL A +A+  L  G+E+H  +MRT + +D  V + L DMY KC
Sbjct: 155 EMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKC 214

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G ++EA  +FD    RD V W +MI    Q GR  E  AL   +   GI P   T    +
Sbjct: 215 GCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAI 274

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           +A AD  A   G+++HGY  R G+       ++L+ MY+K G V  ++ +F+ +   +L+
Sbjct: 275 SAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELI 334

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           SW ++I G+  +G  D A E F  +  ++   PDHI FVGVL+AC H G+V +  + F  
Sbjct: 335 SWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDL 394

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +   + +     HY C+VD+L  SGRF EA DVI  M +KPD  +W +LL GC+IH N++
Sbjct: 395 MVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVE 454

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA+ A   L E+EPE+   YV ++NIYA +
Sbjct: 455 LAELALHKLIELEPEDAGNYVLLSNIYAQS 484



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 147/293 (50%), Gaps = 4/293 (1%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N    +++L +    + +R G+++H  ++ +G   D V+ + L D+Y  CG ++ AR++F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 218 DKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAA 275
           D+M ++ +V  W  +I  Y ++G RE    L+ E++  G + P+ FT+  VL ACA    
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD 181

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              G++VH  + R  +    F  + L+ MY+KCG V+ +  VF+     D V W S+IA 
Sbjct: 182 LGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAA 241

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
             QNG P +AL     +   G  P  +  V  ++A   AG + +G +  H    + G   
Sbjct: 242 CGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRE-LHGYGWRRGFGS 300

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
                  ++D+ A+SG    A  +  ++    +   W +++ G  +HG+ D A
Sbjct: 301 QDKLKTSLLDMYAKSGWVTVARVLFDQL-FHRELISWNAMICGFGMHGHADHA 352



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 142/315 (45%), Gaps = 35/315 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  +++ C     L  G++VH  +  + +   VF+   L+DMYAKCG + +A  +
Sbjct: 164 PDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAV 223

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    RD   +N+MI+   + G                               +P EAL
Sbjct: 224 FDSTTVRDAVVWNSMIAACGQNG-------------------------------RPAEAL 252

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L R M   E       TL S +SA +    L  G+E+HGY  R GF S + + ++L DM
Sbjct: 253 ALCRNMAA-EGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDM 311

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFT 262
           Y K G +  AR +FD++  R+++SW AMI  +   G  +    LF  +  ++ + P+  T
Sbjct: 312 YAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHIT 371

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F GVL+AC      +  K+V   M  +    P     + LV +    G  + +  V  GM
Sbjct: 372 FVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGM 431

Query: 322 -PRPDLVSWTSLIAG 335
             +PD   W +L+ G
Sbjct: 432 LVKPDSGIWGALLNG 446



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 95/342 (27%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  G+++H +    GF     +   LLDMYAK G ++ A+ LFD++  R++ S+N MI G
Sbjct: 283 LPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICG 342

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           F   G  +                                A +L+R M+N    + +  T
Sbjct: 343 FGMHGHADH-------------------------------ACELFRRMRNEAQVMPDHIT 371

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
              VLSA +           HG                        G + EA+++FD MV
Sbjct: 372 FVGVLSACN-----------HG------------------------GMVQEAKEVFDLMV 396

Query: 222 -----DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAA 275
                   V  +T ++      GR +E     S++IK   ++P++  +  +LN C  H  
Sbjct: 397 TVYSIKPMVQHYTCLVDVLGHSGRFKEA----SDVIKGMLVKPDSGIWGALLNGCKIHKN 452

Query: 276 EELGK-QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-----GMPRPDLVSW 329
            EL +  +H  +     D  ++    L ++Y++ G  E + +V       G+ +    SW
Sbjct: 453 VELAELALHKLIELEPEDAGNYV--LLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSW 510

Query: 330 TSL-------IAGYAQNGMPDKALEYFE----LLLKSGTQPD 360
             L       + G A +   D+  E  E    L+ ++G  PD
Sbjct: 511 IELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPD 552


>gi|46403989|gb|AAS93059.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 810

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 260/468 (55%), Gaps = 37/468 (7%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R ++   ++ HQ   P+   Y+S+  F   N ++E G ++HS     GF  G+ + + L 
Sbjct: 355 RSVQLLRRMFHQGLRPNDKCYASV--FSSVN-SIEFGGQLHSSAIKEGFIHGILVGSALS 411

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY++C N+ D              SY                  +F+EM +RD  SWTA
Sbjct: 412 TMYSRCDNVQD--------------SYK-----------------VFEEMQERDGVSWTA 440

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           M++G+  +   +EA   +R M   +    +  +L+++LSA +  +CL  GKE+HG+ +R 
Sbjct: 441 MVAGFATHGHSVEAFLTFRNMI-LDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRV 499

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
            +     +      MY KC  +  AR+IFD    +D V W++MI  Y   G  EE  +LF
Sbjct: 500 -YGETTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLF 558

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             ++ + IR +++  + +L+ CAD A     K +HGY  + G       +S+LV +YS+ 
Sbjct: 559 QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRS 618

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           GN+++S+KVF+ +  PDLV+WT++I GYAQ+G    AL  F+L+++ G +PD +V V VL
Sbjct: 619 GNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVL 678

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+  GLV++G  YF+S++  +G+     HY C+VDLL RSGR  EA+  +  MPMKPD
Sbjct: 679 SACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPD 738

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W++L+  CR+H +  L +     + E   ++  ++ T++NI A++
Sbjct: 739 LMVWSTLVAACRVHDDTVLGRFVENKIREGNYDS-GSFATLSNILANS 785



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 228/506 (45%), Gaps = 81/506 (16%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+   YS  +  C     L  G+ VH  +     +  VF+   L++MYAKCG++  A  
Sbjct: 167 EPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMR 226

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQ 138
            F  M  R+V S+ T I+GF +      A  L  EM +     + ++ T+++    + + 
Sbjct: 227 EFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSM 286

Query: 139 PIEALDLYRMMQNFE-------------------------------NSVSNKFTLSSVLS 167
             EA  ++ M+   E                                +VSN+   S+ +S
Sbjct: 287 VREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFIS 346

Query: 168 AVS------AIQCLR-------------------------LGKEIHGYIMRTGFDSDEVV 196
            VS      ++Q LR                          G ++H   ++ GF    +V
Sbjct: 347 GVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILV 406

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            SALS MY +C ++ ++ ++F++M +RD VSWTAM+  +   G   E F  F  +I  G 
Sbjct: 407 GSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGF 466

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  +   +L+AC        GK+VHG+  R+ Y   +F     + MYSKC  V+ +++
Sbjct: 467 KPDHVSLTAILSACNRSECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARR 525

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F+  P  D V W+S+I+GYA NG  ++A+  F+L++ +  + D  +   +L+ C     
Sbjct: 526 IFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCA---- 581

Query: 377 VDKGLQYF----HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
            D    ++    H    K G+       + +V + +RSG   ++  V  ++ + PD   W
Sbjct: 582 -DIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISV-PDLVAW 639

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEI 458
            +++ G   HG    + + A A+F++
Sbjct: 640 TTIIDGYAQHG----SSQNALAMFDL 661



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 8/348 (2%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           M+    K G L  A  +F +        W A +SG VR  +   A++++R M  + +   
Sbjct: 110 MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMV-WGSCEP 168

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N FT S  LSA +A + L +G+ +HG ++R   + D  V ++L +MY KCG +  A + F
Sbjct: 169 NSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREF 228

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            +M  R+VVSWT  I  + Q+        L  E++++G+  N +T   +L ACA  +   
Sbjct: 229 WRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVR 288

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS-WTSLIAGY 336
              Q+HG + +           AL+  Y+  G +E S+KVF         S W++ I+G 
Sbjct: 289 EASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGV 348

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           + + +  ++++    +   G +P+   +  V ++      ++ G Q  HS   K G  + 
Sbjct: 349 SNHSLL-RSVQLLRRMFHQGLRPNDKCYASVFSSVNS---IEFGGQ-LHSSAIKEGFIHG 403

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
               + +  + +R     ++  V  +M  + D   W +++ G   HG+
Sbjct: 404 ILVGSALSTMYSRCDNVQDSYKVFEEMQER-DGVSWTAMVAGFATHGH 450



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 17/275 (6%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           ++++    + G   +  V + + D+  K G + +A ++F        V W A +    + 
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL--GKQVHGYMTRIGYDPYSF 296
           G       +F +++     PN+FT++G L+ACA  A EEL  G+ VHG + R   +   F
Sbjct: 149 GEGGLAVEMFRDMVWGSCEPNSFTYSGALSACA--AGEELSVGRAVHGLVLRRDPEYDVF 206

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             ++LV+MY+KCG++  + + F  MP  ++VSWT+ IAG+ Q+  P  A+     ++++G
Sbjct: 207 VGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNG 266

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARS----- 410
              +      +L AC    +V +  Q        HG+    + Y  C+V     S     
Sbjct: 267 VAINKYTATSILLACAQMSMVREASQI-------HGMVLKTEMYLDCVVKEALISTYTNF 319

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           G    +E V  +     ++ +W++ + G   H  L
Sbjct: 320 GFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLL 354



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 2/181 (1%)

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+ F++   L ACA   A  L +QV+    + G    ++  + +V + +K G + ++ +V
Sbjct: 67  PSQFSYGNALAACARAPAPALAEQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRV 126

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F        V W + ++G  +NG    A+E F  ++    +P+   + G L+AC     +
Sbjct: 127 FADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEEL 186

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             G +  H +  +    Y       +V++ A+ G    A     +MP++ +   W + + 
Sbjct: 187 SVG-RAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVR-NVVSWTTAIA 244

Query: 438 G 438
           G
Sbjct: 245 G 245


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 261/469 (55%), Gaps = 40/469 (8%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           E  Q+ H++       S +++ + ++ C Q R L   K++H  +  +G++    I   L+
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALM 348

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
             Y+KC ++ +A  LF                        + A N+          +WTA
Sbjct: 349 VTYSKCSSVDEAFKLFS---------------------MADAAHNVV---------TWTA 378

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI G+V+ N   +A+DL+  M   E    N FT S+VL+   +     L  ++H  I++ 
Sbjct: 379 MIGGFVQNNNNEKAVDLFCQMSR-EGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKA 433

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
            ++    V +AL D Y K G++ E+ ++F  +  +D+V+W+AM+    Q    E+   +F
Sbjct: 434 YYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVF 493

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAE-ELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
            +L+K G++PN +TF+ V+NAC+  AA  E GKQ+H    + G       +SAL+ MYSK
Sbjct: 494 IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSK 553

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
            GN+E+++KVF      D+VSW S+I GY Q+G   KALE F+++   G   D + F+GV
Sbjct: 554 KGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGV 613

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           LTACTHAGLV++G +YF+ + + + +    +HY+C+VDL +R+G F +A D+I+ MP   
Sbjct: 614 LTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPA 673

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              +W +LL  CR+H NL+L K AAE L  ++P +   YV ++NI+A A
Sbjct: 674 SPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVA 722



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 220/453 (48%), Gaps = 50/453 (11%)

Query: 13  EALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           E + +++Q+     +P+   +++++        +E G +VH+ +  +GF+   F+ N L+
Sbjct: 188 EVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALI 247

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            MY K   + DA+ +F                               D M  RD+ +W  
Sbjct: 248 CMYLKSEMVGDAEAVF-------------------------------DSMVVRDSVTWNI 276

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI GY      +E   ++  M+     +S +    + L   S  + L   K++H  +++ 
Sbjct: 277 MIGGYAAIGFYLEGFQMFHRMRLAGVKLS-RTVFCTALKLCSQQRELNFTKQLHCGVVKN 335

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFA 246
           G++  + + +AL   Y KC S++EA ++F  M D   +VV+WTAMIG + Q    E+   
Sbjct: 336 GYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAHNVVTWTAMIGGFVQNNNNEKAVD 394

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF ++ + G+RPN FT++ VL          L  Q+H  + +  Y+     A+AL+  Y 
Sbjct: 395 LFCQMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYV 450

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K GNV  S +VF  +P  D+V+W++++ G AQ    +KA+E F  L+K G +P+   F  
Sbjct: 451 KTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSS 510

Query: 367 VLTAC-THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           V+ AC + A  V+ G Q  H+   K G +      + ++ + ++ G    AE V ++   
Sbjct: 511 VINACSSSAATVEHGKQ-IHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEE 569

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           + D   W S++ G   HG+   AK+A E +F+I
Sbjct: 570 R-DIVSWNSMITGYGQHGD---AKKALE-VFQI 597



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 187/395 (47%), Gaps = 39/395 (9%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           G++VH     SGF   V +   L+DMY K  +  D + +FDEM  ++V S+ +++SG+ +
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            G  ++  +L ++M                                  E    N FT ++
Sbjct: 183 NGLNDEVIHLINQM--------------------------------QMEGVNPNGFTFAT 210

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           VL A++    +  G ++H  I++ GF+    V +AL  MY K   + +A  +FD MV RD
Sbjct: 211 VLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRD 270

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
            V+W  MIG Y   G   EGF +F  +  +G++ +   F   L  C+        KQ+H 
Sbjct: 271 SVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHC 330

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-GMPRPDLVSWTSLIAGYAQNGMPD 343
            + + GY+      +AL+  YSKC +V+ + K+F+      ++V+WT++I G+ QN   +
Sbjct: 331 GVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNE 390

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           KA++ F  + + G +P+H  +  VL     + L     Q   +  EK     TA     +
Sbjct: 391 KAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATA-----L 445

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +D   ++G   E+  V   +P K D   W+++L G
Sbjct: 446 LDAYVKTGNVVESARVFYSIPAK-DIVAWSAMLTG 479



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 188/404 (46%), Gaps = 39/404 (9%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  LFDE P +D   +  ++  + R N   EAL L++ + +    V +  TLS  L    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGV-DGLTLSCALKVCG 115

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
            +    +G+++H   +++GF  D  V ++L DMY K     + R IFD+M  ++VVSWT+
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           ++  Y + G  +E   L +++   G+ PN FTFA VL A AD +  E G QVH  + + G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
           ++  +F  +AL+ MY K   V +++ VF+ M   D V+W  +I GYA  G   +  + F 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 351 LLLKSGTQPDHIVFVGVLTACT-----------HAGLVDKGLQYFHSIKEKHGLTYT--- 396
            +  +G +    VF   L  C+           H G+V  G ++   I+    +TY+   
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCS 355

Query: 397 -----------ADHYACIVDLLARSGRF------HEAEDVISKMP---MKPDKFLWASLL 436
                      AD    +V   A  G F       +A D+  +M    ++P+ F ++++L
Sbjct: 356 SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVL 415

Query: 437 GGCRIHGNLDLAKRAAEALFEIEPENPA----TYVTMANIYASA 476
            G        L  +  +A +E  P         YV   N+  SA
Sbjct: 416 AGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 250/458 (54%), Gaps = 40/458 (8%)

Query: 25  SPSIY---SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           SP  Y   +S++Q C  + +L  G+++H  L  SG  P   +S  L+D+YA CG +    
Sbjct: 58  SPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVG--- 114

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                        AR LFD MP+R+ F W  +I  Y R      
Sbjct: 115 ----------------------------HARRLFDGMPKRNVFLWNVLIRAYAREGPREA 146

Query: 142 ALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           A+ LYR M   E+ V  + FT   VL A +A+  L  G+E+H  +  T +  D  V + +
Sbjct: 147 AVRLYRGM--VEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGV 204

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            DMY KCG +++AR +FD +  RD V W +MI  Y Q GR  E  AL  ++  +GI P  
Sbjct: 205 VDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTI 264

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T    ++A AD AA   G+++HG+  R G+       ++LV MY+K G V+ ++ +F  
Sbjct: 265 ATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQ 324

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVD 378
           + + +LVSW ++I GY  +G  D+AL  F   +K   Q  PD+I FVGVL+AC H G+V+
Sbjct: 325 LMKRELVSWNAMICGYGMHGHADEALALFN-KMKGDAQVTPDNITFVGVLSACNHGGMVE 383

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +  ++F+ +   + +  T  HY C++D+L  +GRF EA D+I  M ++PD  +W +LL G
Sbjct: 384 EAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNG 443

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C+IH N++L + A + L E+EPE+   YV ++NIYA +
Sbjct: 444 CKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQS 481



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 149/320 (46%), Gaps = 45/320 (14%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  +++ C     LE G++VH  +  + +   VF+   ++DMYAKCG + DA+ +
Sbjct: 161 PDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAV 220

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD +  RD   +N+MI+ + + G                               +P+EAL
Sbjct: 221 FDGIAVRDAVVWNSMIAAYGQNG-------------------------------RPMEAL 249

Query: 144 DLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            L R M    N +     TL S +SA +    L  G+E+HG+  R GF   + + ++L D
Sbjct: 250 ALCRDMA--ANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVD 307

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAF 261
           MY K G +  AR +F++++ R++VSW AMI  Y   G  +E  ALF+++     + P+  
Sbjct: 308 MYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNI 367

Query: 262 TFAGVLNACADHAAEELGKQ-----VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           TF GVL+AC      E  K+     V+ Y  +     Y+     L H     G  E +  
Sbjct: 368 TFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHT----GRFEEAYD 423

Query: 317 VFNGMP-RPDLVSWTSLIAG 335
           +  GM   PD   W +L+ G
Sbjct: 424 LIKGMSIEPDSGIWGALLNG 443


>gi|302764714|ref|XP_002965778.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
 gi|300166592|gb|EFJ33198.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
          Length = 440

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 232/438 (52%), Gaps = 35/438 (7%)

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY  CG   +A  +F  ++  +V S+N +I  +T+ G L++AR LF  MP+++  +W  M
Sbjct: 1   MYGACGQHQEALAVFQGLKSPNVFSWNIIILAYTQNGHLQEARELFSRMPKKNVVTWNTM 60

Query: 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           I+ +V   Q  EALDL+  M        +K TL   L A   +  L   +EIH  I++ G
Sbjct: 61  IAAFVHSGQSQEALDLFDEM----GEEPSKITLIHALQACENLGALEKAQEIHSRIIKLG 116

Query: 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV----------------------- 226
           ++S  ++ +AL +++ K G + +AR IF+KM  RDVV                       
Sbjct: 117 WESHTILSTALFNVFAKHGIMLQARAIFEKMPHRDVVCWNSMVAAYARRGHIEEAMKLFL 176

Query: 227 --------SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
                   SW ++I  Y Q G  +E F LF  +   G+     TF  VL AC    +   
Sbjct: 177 SMSVRNASSWNSIITAYVQSGHSKEAFGLFKAMDLEGVEATKITFLAVLGACTGTNSLAH 236

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           GK VH  M   G+     AA+AL+ MY+KCG  E SK VF  +   + ++W SL+A YA 
Sbjct: 237 GKLVHTLMVDAGFAVDITAATALITMYAKCGAPEASKAVFLQISHHNCITWASLVAAYAH 296

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           NG    A+++F L+      P+ I FV VL AC+H GL++ G  +F S+   +GL    +
Sbjct: 297 NGRGKAAVDFFRLMCLEAFTPNQIAFVNVLHACSHGGLLECGTSFFQSMVGDYGLEPIFE 356

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HYAC+VD+L RSGR   AE++I +MP +PD   W  LL  C+IH ++    RAAE + E+
Sbjct: 357 HYACMVDVLGRSGRTDIAENLILEMPFEPDGLPWTVLLAACKIHHDVKRGARAAEKIVEL 416

Query: 459 EPENPATYVTMANIYASA 476
           +P+  A Y  +AN Y+ +
Sbjct: 417 DPKRCAAYTLLANAYSGS 434



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 161/327 (49%), Gaps = 4/327 (1%)

Query: 12  KEALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +EAL +  ++   PS       +Q C    ALE+ +++HS +   G++    +S  L ++
Sbjct: 71  QEALDLFDEMGEEPSKITLIHALQACENLGALEKAQEIHSRIIKLGWESHTILSTALFNV 130

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           +AK G +  A+ +F++M  RDV  +N+M++ + + G +E+A  LF  M  R+  SW ++I
Sbjct: 131 FAKHGIMLQARAIFEKMPHRDVVCWNSMVAAYARRGHIEEAMKLFLSMSVRNASSWNSII 190

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           + YV+     EA  L++ M + E   + K T  +VL A +    L  GK +H  ++  GF
Sbjct: 191 TAYVQSGHSKEAFGLFKAM-DLEGVEATKITFLAVLGACTGTNSLAHGKLVHTLMVDAGF 249

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             D    +AL  MY KCG+   ++ +F ++   + ++W +++  Y   GR +     F  
Sbjct: 250 AVDITAATALITMYAKCGAPEASKAVFLQISHHNCITWASLVAAYAHNGRGKAAVDFFRL 309

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCG 309
           +      PN   F  VL+AC+     E G      M    G +P     + +V +  + G
Sbjct: 310 MCLEAFTPNQIAFVNVLHACSHGGLLECGTSFFQSMVGDYGLEPIFEHYACMVDVLGRSG 369

Query: 310 NVENSKKVFNGMP-RPDLVSWTSLIAG 335
             + ++ +   MP  PD + WT L+A 
Sbjct: 370 RTDIAENLILEMPFEPDGLPWTVLLAA 396


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 222/379 (58%), Gaps = 1/379 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N  ++ + K GSL  A+ +F  +  +   SW A+I GY + + P  +LD +  M+N    
Sbjct: 418 NAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKN-SGL 476

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           + + FT+ S+LSA S ++ LRLGKE+HG+I+R   + D  V+ ++  +Y  CG +   + 
Sbjct: 477 LPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQV 536

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD M D  +VSW  +I  + Q G  E    LF +++  GI+P   +   V  AC+   +
Sbjct: 537 LFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPS 596

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LG++ H Y  +   +  +F A +++ MY+K G +  S KVFNG+      SW ++I G
Sbjct: 597 LRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMG 656

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  +G   +A++ FE + ++G  PD + F+GVLTAC H+GL+ +GL+Y   +K   GL  
Sbjct: 657 YGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKP 716

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
              HYAC++D+L R+G+   A  V ++M  +PD  +W SLL  CRIH NL++ ++ A  L
Sbjct: 717 NLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKL 776

Query: 456 FEIEPENPATYVTMANIYA 474
           F +EPE P  YV ++N+YA
Sbjct: 777 FVLEPEKPENYVLLSNLYA 795



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 206/436 (47%), Gaps = 40/436 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +   +++  C + R +  GK VH           + ++N L+DMY+K G I D+Q +
Sbjct: 274 PDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMI 333

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F     ++V S+NTM+ GF+  G +    +L                             
Sbjct: 334 FKLNNNKNVVSWNTMVGGFSAEGDIHGTFDL----------------------------- 364

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L +M+   E+  +++ T+ + +        L   KE+H Y ++  F  DE++ +A    
Sbjct: 365 -LRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVAS 423

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS++ A+++F  +  + + SW A+IG Y Q            ++  SG+ P+ FT 
Sbjct: 424 YAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTV 483

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L+AC+   +  LGK+VHG++ R   +   F   +++ +Y  CG +   + +F+ M  
Sbjct: 484 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMED 543

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             LVSW ++I G+ QNG P++AL  F  ++  G QP  I  + V  AC+    +  G + 
Sbjct: 544 NSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREA 603

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+   KH L   A     I+D+ A++G   ++  V + +  K     W +++ G  +HG
Sbjct: 604 -HAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS-WNAMIMGYGMHG 661

Query: 444 NLDLAKRAAEA--LFE 457
                 RA EA  LFE
Sbjct: 662 ------RAKEAIKLFE 671



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 178/411 (43%), Gaps = 50/411 (12%)

Query: 32  LIQFCRQNRALEEGKKVHSHL--KSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           L+Q   + + +E G+K+H HL   S+  +    +   ++ MYA CG+  D+         
Sbjct: 90  LLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDS--------- 139

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                                 R+ FD +  ++ F W A+IS Y R     E L+++  M
Sbjct: 140 ----------------------RSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKM 177

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
            +  + + + FT   V+ A + I  + +G  +HG +++TG   D  V +AL   YG  G 
Sbjct: 178 ISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGF 237

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +++A ++FD M +R++VSW +MI R F +   +  F            P+  T   VL  
Sbjct: 238 VSDALKLFDIMPERNLVSWNSMI-RVFSDNGDDGAFM-----------PDVATVVTVLPV 285

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA      +GK VHG+  ++  D      +AL+ MYSK G + +S+ +F      ++VSW
Sbjct: 286 CAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSW 345

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            +++ G++  G      +    +L      + D +  +  +  C    ++   L+  H  
Sbjct: 346 NTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVL-PSLKELHCY 404

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             K    Y        V   A+ G    A+ V   +  K     W +L+GG
Sbjct: 405 SLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNS-WNALIGG 454



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 156/330 (47%), Gaps = 7/330 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A ++ H I   + + +++LI    Q+         H  +K+SG  P  F    LL  
Sbjct: 430 LSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSA 489

Query: 71  YAKCGNISDAQT----LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
            +K  ++   +     +     ERD+  Y +++S +   G L   + LFD M      SW
Sbjct: 490 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSW 549

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             +I+G+++   P  AL L+R M  +        ++ +V  A S +  LRLG+E H Y +
Sbjct: 550 NTVITGHLQNGFPERALGLFRQMVLYGIQPCG-ISMMTVFGACSLLPSLRLGREAHAYAL 608

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           +   + +  +  ++ DMY K G+I ++ ++F+ + ++   SW AMI  Y   GR +E   
Sbjct: 609 KHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIK 668

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMY 305
           LF E+ ++G  P+  TF GVL AC        G +    M +  G  P     + ++ M 
Sbjct: 669 LFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDML 728

Query: 306 SKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
            + G ++N+ +V   M   PD+  W SL++
Sbjct: 729 GRAGQLDNALRVAAEMSEEPDVGIWNSLLS 758



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 162/377 (42%), Gaps = 63/377 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +I+ C     +  G  VH  +  +G    +F+ N L+  Y   G +SDA   
Sbjct: 185 PDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDAL-- 242

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         LFD MP+R+  SW +MI  +          
Sbjct: 243 -----------------------------KLFDIMPERNLVSWNSMIRVFS--------- 264

Query: 144 DLYRMMQNFENSVSNKF-----TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
                    +N     F     T+ +VL   +  + + +GK +HG+ ++   D + VV +
Sbjct: 265 ---------DNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNN 315

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--I 256
           AL DMY K G I +++ IF    +++VVSW  M+G +  EG     F L  +++     +
Sbjct: 316 ALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDV 375

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           + +  T    +  C D +     K++H Y  +  +      A+A V  Y+KCG++  +++
Sbjct: 376 KADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQR 435

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF+G+    L SW +LI GYAQ+  P  +L+    +  SG  PD+     +L+AC+    
Sbjct: 436 VFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSK--- 492

Query: 377 VDKGLQYFHSIKEKHGL 393
               L+     KE HG 
Sbjct: 493 ----LKSLRLGKEVHGF 505



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 28/319 (8%)

Query: 146 YRMMQNF---ENSVSNKF-----TLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVV 196
           +R++Q F   + S S+ F      L  +L A    + + +G++IH  +   T   SD+V+
Sbjct: 63  FRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVL 122

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSG 255
            + +  MY  CGS +++R  FD +  +++  W A+I  Y +     E   +F ++I K+ 
Sbjct: 123 CTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTH 182

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           + P+ FTF  V+ ACA  +   +G  VHG + + G     F  +ALV  Y   G V ++ 
Sbjct: 183 LLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDAL 242

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           K+F+ MP  +LVSW S+I  ++ NG  D A             PD    V VL  C    
Sbjct: 243 KLFDIMPERNLVSWNSMIRVFSDNG-DDGAF-----------MPDVATVVTVLPVCARER 290

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            +  G +  H    K  L         ++D+ ++ G   +++ +I K+    +   W ++
Sbjct: 291 EIGVG-KGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQ-MIFKLNNNKNVVSWNTM 348

Query: 436 LGGCR----IHGNLDLAKR 450
           +GG      IHG  DL ++
Sbjct: 349 VGGFSAEGDIHGTFDLLRQ 367



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVFIS 64
           R KEA+++  ++     +P    +  ++  C  +  L EG +    +KSS G KP +   
Sbjct: 662 RAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHY 721

Query: 65  NCLLDMYAKCGNISDAQTLFDEM-QERDVCSYNTMIS 100
            C++DM  + G + +A  +  EM +E DV  +N+++S
Sbjct: 722 ACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLS 758


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 253/447 (56%), Gaps = 17/447 (3%)

Query: 31   SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ-- 88
            +++QF ++ +A E      S  K+ G  PG    +C       C   + A+     +Q  
Sbjct: 703  AVLQFWQRIKATE------SKYKTIGSAPGTDTISCF-----SCLKKTHAKIFAYGLQYD 751

Query: 89   ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
             R +  +  M   F +   ++ A  +F+++P   +F W  MI G+    + + +L+LY  
Sbjct: 752  SRILTKFAIMYVSFNR---IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSK 808

Query: 149  MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
            M   +    +KF     L + + +  L+ GK IH +++  G  +D  V +AL DMY KCG
Sbjct: 809  MME-KGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCG 867

Query: 209  SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
             I  AR +FDKM  RD+VSWT+MI  Y   G   E    F  +  SG+ PN  +   VL 
Sbjct: 868  DIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLL 927

Query: 269  ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            AC +  A   G+  H Y+ + G++     A+A++ MYSKCG+++ ++ +F+     DLV 
Sbjct: 928  ACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVC 987

Query: 329  WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
            W+++IA Y  +G   KA++ F+ ++K+G +P H+ F  VL+AC+H+GL+++G  YF  + 
Sbjct: 988  WSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMT 1047

Query: 389  EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            E+  +     +YAC+VDLL R+G+  EA D+I  MP++PD  +W SLLG CRIH NLDLA
Sbjct: 1048 EEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 1107

Query: 449  KRAAEALFEIEPENPATYVTMANIYAS 475
            ++ A+ LF ++P +   +V ++NIYA+
Sbjct: 1108 EKIADHLFHLDPVHAGYHVLLSNIYAA 1134



 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 270/478 (56%), Gaps = 15/478 (3%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL---KSSGFKPGVF 62
           C Q  + EAL++  +   P   +++S++   +QN   EE   + S +         P   
Sbjct: 152 CGQ--MGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTL 209

Query: 63  IS---NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
           +S    C   +  K G+      +  E  + D+   N++++ + K G  + A NLF +MP
Sbjct: 210 VSVVSACAQLLNVKAGSCVHGLVIRREF-DGDLPLVNSLLNLYAKTGCEKIAANLFSKMP 268

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           ++D  SW+ MI+ Y       EAL+L+  M  + FE    N  T+ S L A +  + L  
Sbjct: 269 EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFE---PNSVTVVSALQACAVSRNLEE 325

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK+IH   +  GF+ D  V +AL DMY KC   +EA  +F ++  +DVVSW A++  Y Q
Sbjct: 326 GKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQ 385

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   +   +F  ++  GI+P+A     +L A ++    +    +HGY+ R G++   F 
Sbjct: 386 NGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFV 445

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++L+ +YSKCG++ ++ K+F GM   D+V W+S+IA Y  +G   +ALE F+ ++K+ T
Sbjct: 446 GASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNST 505

Query: 358 -QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +P+++ F+ +L+AC+HAGLV++GL+ F  +   + L   ++H+  +VDLL R G+  +A
Sbjct: 506 VRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKA 565

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            D+I++MP+     +W +LLG CRIH N+++ + AA+ LF ++P +   Y+ ++NIYA
Sbjct: 566 MDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYA 623



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 226/451 (50%), Gaps = 14/451 (3%)

Query: 11  LKEALQILHQISHPSPSIY-SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           L+ A ++  +  HP+  ++ S+L  +CR+ +  E  +  H  + ++G  P  F     L 
Sbjct: 52  LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111

Query: 70  MYA-----KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
             A     + G +       ++    D+   + ++  ++K G + +A  +F+E  + D  
Sbjct: 112 ACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTV 171

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
            WT+M++GY + N P EAL L+  M   +  V +  TL SV+SA + +  ++ G  +HG 
Sbjct: 172 LWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGL 231

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           ++R  FD D  + ++L ++Y K G    A  +F KM ++DV+SW+ MI  Y       E 
Sbjct: 232 VIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEA 291

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LF E+I+    PN+ T    L ACA     E GK++H      G++     ++AL+ M
Sbjct: 292 LNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDM 351

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y KC   + +  +F  +P+ D+VSW +L++GYAQNGM  K++  F  +L  G QPD +  
Sbjct: 352 YMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAV 411

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           V +L A +  G+  + L   H    + G        A +++L ++ G   +A  +   M 
Sbjct: 412 VKILAASSELGIFQQAL-CLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI 470

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           ++ D  +W+S++    IHG      R  EAL
Sbjct: 471 VR-DVVIWSSMIAAYGIHG------RGGEAL 494



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 194/416 (46%), Gaps = 38/416 (9%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S  +   L Q C   R++ +   +HS +  +G     F +  L  +YAKC          
Sbjct: 3   SRQVLVDLFQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCA--------- 50

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                                 SL+ AR +FDE P  +   W + +  Y R  Q  E L 
Sbjct: 51  ----------------------SLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLR 88

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDM 203
           L+ +M        + FT+   L A + ++ L LGK IHG+  +     SD  V SAL ++
Sbjct: 89  LFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVEL 148

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFT 262
           Y KCG + EA ++F++    D V WT+M+  Y Q    EE  ALFS+++    +  +  T
Sbjct: 149 YSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVT 208

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              V++ACA     + G  VHG + R  +D      ++L+++Y+K G  + +  +F+ MP
Sbjct: 209 LVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP 268

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D++SW+++IA YA N   ++AL  F  +++   +P+ +  V  L AC  +  +++G +
Sbjct: 269 EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG-K 327

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             H I    G          ++D+  +     EA D+  ++P K D   W +LL G
Sbjct: 328 KIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSG 382



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 157/316 (49%), Gaps = 38/316 (12%)

Query: 24   PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
            P    +   ++ C     L+ GK +H HL   G    +F+   L+DMYAKCG+I  A+ +
Sbjct: 816  PDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLV 875

Query: 84   FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            FD+M  RD+ S+ +MISG+   G                             YN   E L
Sbjct: 876  FDKMAVRDLVSWTSMISGYAHNG-----------------------------YNS--ETL 904

Query: 144  DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
              + +M++    + N+ ++ SVL A   +  LR G+  H Y+++TGF+ D +V +A+ DM
Sbjct: 905  GFFDLMRS-SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDM 963

Query: 204  YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
            Y KCGS++ AR +FD+   +D+V W+AMI  Y   G   +   LF +++K+G+RP+  TF
Sbjct: 964  YSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTF 1023

Query: 264  AGVLNACADHAAEELGKQVHGYMTR---IGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
              VL+AC+     E GK     MT    I     ++A   +V +  + G +  +  +   
Sbjct: 1024 TCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYA--CMVDLLGRAGQLSEAVDLIEN 1081

Query: 321  MP-RPDLVSWTSLIAG 335
            MP  PD   W SL+  
Sbjct: 1082 MPVEPDASIWGSLLGA 1097


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 225/376 (59%), Gaps = 2/376 (0%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K G L+ AR+LF EMP R+  +W A+++  V   +P+E ++ Y  ++     + N  +
Sbjct: 57  YFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLRE-AGGLPNVVS 115

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
             +  +A +    L LG++ HG++++ GF+ D  V +++ D YGKC    +AR +FD M 
Sbjct: 116 ACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMG 175

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R+ VSW +M+  Y Q G  EE FA +    +SG  P  F  +  L  CA      LG+ 
Sbjct: 176 VRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA 235

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    R   D   F ASALV MY KCG VE+++++F   P+ +LV+W ++I GYA  G 
Sbjct: 236 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 295

Query: 342 PDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              AL  F+ +++SG T P++I  V V+T+C+  GL   G + F +++E+ G+    +HY
Sbjct: 296 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 355

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           AC+VDLL R+G   +A +VI  MPM+P   +W +LLG C++HG  +L + AAE LFE++P
Sbjct: 356 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 415

Query: 461 ENPATYVTMANIYASA 476
           ++   +V ++N++ASA
Sbjct: 416 QDSGNHVLLSNMFASA 431



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 155/321 (48%), Gaps = 7/321 (2%)

Query: 158 NKFTLSSVL-SAVSAIQCLRLGKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQ 215
           N FT  S   +A SA     +G +IH   +R G+   D  V  A  DMY K G +  AR 
Sbjct: 9   NDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARH 68

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F +M +R+VV+W A++     +GR  E    +  L ++G  PN  +     NACA    
Sbjct: 69  LFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMY 128

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LG+Q HG++ + G++      +++V  Y KC     ++ VF+GM   + VSW S++A 
Sbjct: 129 LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAA 188

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLT 394
           YAQNG  ++A   +    +SG +P   +    LT C  AGL+   L +  H++  +  + 
Sbjct: 189 YAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTC--AGLLGLHLGRALHAVAVRSCID 246

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
                 + +VD+  + G   +AE +  + P + +   W +++GG    G+   A    + 
Sbjct: 247 ANIFVASALVDMYGKCGCVEDAEQIFYETPQR-NLVTWNAMIGGYAHIGDAQNALLVFDD 305

Query: 455 LFEIEPENPATYVTMANIYAS 475
           +     E    Y+T+ N+  S
Sbjct: 306 MIR-SGETAPNYITLVNVITS 325



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 151/320 (47%), Gaps = 37/320 (11%)

Query: 26  PSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P++ S+   F  C     L  G++ H  +   GF+  V + N ++D Y KC     A+ +
Sbjct: 111 PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAV 170

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  R+  S+ +M++ + + G+ E+A              + A +       +P +  
Sbjct: 171 FDGMGVRNSVSWCSMVAAYAQNGAEEEA--------------FAAYLGARRSGEEPTD-- 214

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                           F +SS L+  + +  L LG+ +H   +R+  D++  V SAL DM
Sbjct: 215 ----------------FMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDM 258

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           YGKCG + +A QIF +   R++V+W AMIG Y   G  +    +F ++I+SG   PN  T
Sbjct: 259 YGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYIT 318

Query: 263 FAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
              V+ +C+     + G ++   M  R G +P +   + +V +  + G  E + +V  GM
Sbjct: 319 LVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGM 378

Query: 322 P-RPDLVSWTSLIAGYAQNG 340
           P RP +  W +L+     +G
Sbjct: 379 PMRPSISVWGALLGACKMHG 398



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 4/188 (2%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEE-LGKQVHGYMTRIGYDPYS-FAASALVHMYSKC 308
           +++ G+RPN FTF     A A       +G Q+H    R GY P   F + A + MY K 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G ++ ++ +F  MP  ++V+W +++     +G P + +E +  L ++G  P+ +      
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC  A  +  G Q FH    K G          +VD   +     +A  V   M ++ +
Sbjct: 121 NACAGAMYLSLGEQ-FHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVR-N 178

Query: 429 KFLWASLL 436
              W S++
Sbjct: 179 SVSWCSMV 186



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 43/228 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + SS +  C     L  G+ +H+    S     +F+++ L+DMY KCG + DA+ +
Sbjct: 212 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 271

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F E  +R++ ++N MI G+   G  + A  +FD+M               +R  +     
Sbjct: 272 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDM---------------IRSGE----- 311

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM------RTGFDSDEVVW 197
                      +  N  TL +V+++     C R G    GY +      R G +     +
Sbjct: 312 -----------TAPNYITLVNVITS-----CSRGGLTKDGYELFETMRERFGIEPRTEHY 355

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEG 244
           + + D+ G+ G   +A ++   M  R  +S W A++G     G+ E G
Sbjct: 356 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELG 403


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 227/382 (59%), Gaps = 2/382 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N++ISG++  G  + A  LFD    +D  +WTAMI G+VR     EA+  +  M+     
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKK-TGV 200

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEAR 214
            +N+ T+ SVL A   ++ +R G+ +HG  + TG    D  + S+L DMYGKC   ++A+
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQ 260

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++FD+M  R+VV+WTA+I  Y Q    ++G  +F E++KS + PN  T + VL+ACA   
Sbjct: 261 KVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A   G++VH YM +   +  + A + L+ +Y KCG +E +  VF  +   ++ +WT++I 
Sbjct: 321 ALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMIN 380

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           G+A +G    A + F  +L S   P+ + F+ VL+AC H GLV++G + F S+K +  + 
Sbjct: 381 GFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNME 440

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
             ADHYAC+VDL  R G   EA+ +I +MPM+P   +W +L G C +H + +L K AA  
Sbjct: 441 PKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASR 500

Query: 455 LFEIEPENPATYVTMANIYASA 476
           + +++P +   Y  +AN+Y+ +
Sbjct: 501 VIKLQPSHSGRYTLLANLYSES 522



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 165/345 (47%), Gaps = 9/345 (2%)

Query: 103 TKGGSLEQARNLFDEMPQRDNFSWTAMI---SGYVRYNQPIEALDLYRMMQNFENSVSNK 159
           T       AR L  ++       W ++I   SG +  N+ +  L    M +N    + ++
Sbjct: 47  TAATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRN--GVIPSR 104

Query: 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219
            T   +L AV  ++      + H +I++ G DSD  V ++L   Y   G  + A ++FD 
Sbjct: 105 HTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDG 163

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
             D+DVV+WTAMI  + + G   E    F E+ K+G+  N  T   VL A         G
Sbjct: 164 AEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFG 223

Query: 280 KQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           + VHG     G      F  S+LV MY KC   ++++KVF+ MP  ++V+WT+LIAGY Q
Sbjct: 224 RSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQ 283

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +   DK +  FE +LKS   P+      VL+AC H G + +G +  H    K+ +     
Sbjct: 284 SRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG-RRVHCYMIKNSIEINTT 342

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               ++DL  + G   EA  V  ++  K + + W +++ G   HG
Sbjct: 343 AGTTLIDLYVKCGCLEEAILVFERLHEK-NVYTWTAMINGFAAHG 386



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 146/293 (49%), Gaps = 35/293 (11%)

Query: 45  GKKVHS-HLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFT 103
           G+ VH  +L++   K  VFI + L+DMY KC    DAQ +FDEM  R+V ++  +I+G+ 
Sbjct: 223 GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV 282

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
           +    ++   +F+EM + D                                   N+ TLS
Sbjct: 283 QSRCFDKGMLVFEEMLKSD--------------------------------VAPNEKTLS 310

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SVLSA + +  L  G+ +H Y+++   + +    + L D+Y KCG + EA  +F+++ ++
Sbjct: 311 SVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK 370

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           +V +WTAMI  +   G   + F LF  ++ S + PN  TF  VL+ACA     E G+++ 
Sbjct: 371 NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430

Query: 284 GYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIA 334
             M  R   +P +   + +V ++ + G +E +K +   MP  P  V W +L  
Sbjct: 431 LSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFG 483



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 36/233 (15%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS++  C    AL  G++VH ++  +  +        L+D+Y KCG + +A  +
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ + E++V ++  MI+GF   G    A +LF             M+S +V         
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLF-----------YTMLSSHVS-------- 404

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV--WSALS 201
                         N+ T  +VLSA +    +  G+ +    M+  F+ +     ++ + 
Sbjct: 405 -------------PNEVTFMAVLSACAHGGLVEEGRRLF-LSMKGRFNMEPKADHYACMV 450

Query: 202 DMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
           D++G+ G + EA+ + ++M ++   V W A+ G        E G    S +IK
Sbjct: 451 DLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/409 (34%), Positives = 237/409 (57%), Gaps = 32/409 (7%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           ++S + K   L   R LFDE P+RD   ++++++       P   L L R M + +    
Sbjct: 44  LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRP 103

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + F L+S+ SA + ++ L LGK++HG+ + + + SD+VV S+L DMY KCG  ++AR++F
Sbjct: 104 DHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVF 163

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALF-----------SELIKSGIRP-------- 258
           D +V ++ V WTA+I  Y   GR +E   LF           + LI   +R         
Sbjct: 164 DSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVK 223

Query: 259 -------------NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
                        +AF  +  +   AD AA  LG+Q+H    R+G+       +A+V MY
Sbjct: 224 LFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMY 283

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           SKC ++ ++++VF  +   D++SWT+++ G AQ+G  ++A   ++ ++ +G +P+ + FV
Sbjct: 284 SKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFV 343

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G++ AC+HAGLV KG Q F S+K ++G+     HY C +DLL+RSG   EAE++I+ MP 
Sbjct: 344 GLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPY 403

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            PD+  WASLL  C+ + N +++ R A+ L E+ P+ P+TYV ++N+YA
Sbjct: 404 VPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYVLLSNVYA 452



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 178/314 (56%), Gaps = 2/314 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   + +S+     + R+L  GK++H H  +S +     + + L+DMY KCG   DA+ +
Sbjct: 103 PDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKV 162

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD +  ++   +  +ISG+   G  ++A  LF  MP R  F+WTA+ISG+VR  + + A+
Sbjct: 163 FDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAV 222

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+  M+    S+ + F LSS +   + +    LG+++H   MR GF S  +V +A+ DM
Sbjct: 223 KLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDM 282

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  I+ AR++F+++  RD++SWT M+    Q GR EE F+L+  ++ +G++PN  TF
Sbjct: 283 YSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTF 342

Query: 264 AGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            G++ AC+     + G+Q+   M    G +P     +  + + S+ G++  ++++   MP
Sbjct: 343 VGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMP 402

Query: 323 R-PDLVSWTSLIAG 335
             PD  +W SL++ 
Sbjct: 403 YVPDEATWASLLSA 416



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 15/176 (8%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           ++ H  + + G   +  A + LV  Y+K   + +++ +F+  PR DL  ++SL+A  + +
Sbjct: 23  RRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHS 82

Query: 340 GMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG----LT 394
             P+  L     +L +   +PDH V   + +A      +  G       K+ HG      
Sbjct: 83  ESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLG-------KQLHGHFVASP 135

Query: 395 YTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           Y++D    + ++D+  + G   +A  V   +  K +  +W +L+ G  ++G  D A
Sbjct: 136 YSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAK-NSVMWTALISGYVLNGRSDEA 190


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/394 (35%), Positives = 221/394 (56%), Gaps = 40/394 (10%)

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF  M ERDV S+N+MI G  K G L +A  LFDEMP +D  SW  ++ GYV+  +  +A
Sbjct: 3   LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKA 62

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             L+  M                                         + + V WS +  
Sbjct: 63  FGLFESMP----------------------------------------ERNVVSWSTMVS 82

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            Y K G +  AR +FD+M  +++VSWT ++  Y  +G  ++    F ++ ++G++P+  T
Sbjct: 83  GYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGT 142

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L +CA+     LGK+VH  + RI Y      ++ALV MY+KCG V+ +  VFNGM 
Sbjct: 143 VISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMS 202

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           + DLVSW  ++ G A +G  +KAL+ F ++ + G +PD +  V VL AC HAG VD+G++
Sbjct: 203 KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIR 262

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF++++  +G+    +HY C+VDLL R GR  EA  ++  MP++P+  +W +LLG CR+H
Sbjct: 263 YFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             + LA+   + LF++EP +P  Y  ++NI+ASA
Sbjct: 323 NAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASA 356



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 3/292 (1%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N +LD Y K G ++ A  LF+ M ER+V S++TM+SG+ K G +E AR LFD MP ++  
Sbjct: 47  NTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLV 106

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SWT ++SGY       +A+  +  M+       +  T+ S+L++ +    L LGK +H  
Sbjct: 107 SWTIIVSGYAVKGLAKDAIRSFEQMEE-AGLKPDDGTVISILASCAESGLLGLGKRVHTS 165

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I R  +     V +AL DMY KCG ++ A  +F+ M  +D+VSW  M+      G  E+ 
Sbjct: 166 IERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKA 225

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVH 303
             LFS + + G RP+  T   VL AC      + G +    M R  G  P+      +V 
Sbjct: 226 LQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVD 285

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           +  + G ++ + ++   MP  P++V W +L+     +     A E  + L K
Sbjct: 286 LLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFK 337



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           ++F  M +RDVVSW +MI    + G   E   LF E+       +A ++  +L+      
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK----DAVSWNTILDGYV--K 55

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
           A E+ K    + +    +  S+  S +V  Y K G++E ++ +F+ MP  +LVSWT +++
Sbjct: 56  AGEMNKAFGLFESMPERNVVSW--STMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVS 113

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
           GYA  G+   A+  FE + ++G +PD    + +L +C  +GL+  G +  H+  E+    
Sbjct: 114 GYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLG-KRVHTSIERIRYK 172

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            + +    +VD+ A+ G+   A  V + M  K D   W  +L G  +HG+
Sbjct: 173 CSVNVSNALVDMYAKCGQVDRALSVFNGMS-KKDLVSWNCMLQGLAMHGH 221



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 48/233 (20%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           K+A++   Q+      P      S++  C ++  L  GK+VH+ ++   +K  V +SN L
Sbjct: 122 KDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNAL 181

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG +  A ++F+ M ++D+ S+N M+ G    G  E+A  LF  M Q       
Sbjct: 182 VDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQ------- 234

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                    E    +K TL +VL A     C+  G    G    
Sbjct: 235 -------------------------EGFRPDKVTLVAVLCA-----CVHAGFVDEGIRYF 264

Query: 188 TGFDSDEVV------WSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
              + D  +      +  + D+ G+ G + EA ++   M V+ +VV W  ++G
Sbjct: 265 NNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLG 317


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 229/379 (60%), Gaps = 1/379 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N  ++G+ K GSL  A  +F  M  +   SW A+I G+V+   P +ALDLY +M+     
Sbjct: 440 NAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRG-SGL 498

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             + FT++S+LSA + ++ L  GKEIHG ++R GF+ DE +  +L  +Y +CG I  A+ 
Sbjct: 499 EPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKL 558

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            FD M ++++V W  MI  + Q     +   +F +++ S I P+  +  G L AC+  +A
Sbjct: 559 FFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSA 618

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LGK++H +  +     +SF   +L+ MY+KCG +E S+ +F+ +     V+W  LI G
Sbjct: 619 LRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITG 678

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  +G   KA+E F+ +  +G +PD + F+ +LTAC HAGLV +GL+Y   ++   G+  
Sbjct: 679 YGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKP 738

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HYAC+VD+L R+GR +EA ++++++P KPD  +W+SLL  CR + +LD+ ++ A  L
Sbjct: 739 KLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKL 798

Query: 456 FEIEPENPATYVTMANIYA 474
            E+ P+    YV ++N YA
Sbjct: 799 LELGPDKAENYVLISNFYA 817



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 231/455 (50%), Gaps = 16/455 (3%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKS--SGFKPGVFISNCLL 68
           ++ A+++  ++   +   ++S++  C +N   EE   +   L +   G  P V     ++
Sbjct: 247 VESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVI 306

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCS----YNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
            + A+ G +           +  +C      ++++  ++K G L +AR LFD   +++  
Sbjct: 307 PLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVI 365

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA-IQCLRLGKEIHG 183
           SW +MI GY +      A +L R MQ  +    N+ TL +VL      IQ L+L KEIHG
Sbjct: 366 SWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL-KEIHG 424

Query: 184 YIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
           Y +R GF  SDE+V +A    Y KCGS++ A  +F  M  + V SW A+IG + Q G   
Sbjct: 425 YALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPR 484

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   L+  +  SG+ P+ FT A +L+ACA   +   GK++HG M R G++   F   +LV
Sbjct: 485 KALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLV 544

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            +Y +CG +  +K  F+ M   +LV W ++I G++QN  P  AL+ F  +L S   PD I
Sbjct: 545 SLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEI 604

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
             +G L AC+    +  G +  H    K  LT  +     ++D+ A+ G   +++++  +
Sbjct: 605 SIIGALGACSQVSALRLG-KELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDR 663

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           + +K +   W  L+ G  IHG+     R A  LF+
Sbjct: 664 VHLKGE-VTWNVLITGYGIHGH----GRKAIELFK 693



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 209/447 (46%), Gaps = 47/447 (10%)

Query: 5   LCNQRRLKEALQILHQ-------ISHPSPS-IYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
           LCN   L +A   L          S+  P  +   L+Q C + + +E G+K+H+ + +S 
Sbjct: 64  LCNTGNLNQAFNFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSP 123

Query: 57  -FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
            F+  V +   L+ MY+ C +  D+  +F+  + +++                       
Sbjct: 124 HFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNL----------------------- 160

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
                   F W A++SGY+R +   +A+ ++  M +    V + FTL  V+ A   +  +
Sbjct: 161 --------FLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDV 212

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           RLG+ +HG+ ++T   SD  V +AL  MYGK G +  A ++FDKM  R++VSW +++   
Sbjct: 213 RLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYAC 272

Query: 236 FQEGRREEGFALFSELIK--SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
            + G  EE + LF  L+    G+ P+  T   V+  CA      LG   HG   ++G   
Sbjct: 273 LENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCG 332

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELL 352
                S+L+ MYSKCG +  ++ +F+   + +++SW S+I GY+++     A E   ++ 
Sbjct: 333 ELKVNSSLLDMYSKCGYLCEARVLFDTNEK-NVISWNSMIGGYSKDRDFRGAFELLRKMQ 391

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLARSG 411
           ++   + + +  + VL  C       K L+  H    +HG   + +  A   V   A+ G
Sbjct: 392 MEDKVKVNEVTLLNVLPVCEEEIQFLK-LKEIHGYALRHGFIQSDELVANAFVAGYAKCG 450

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGG 438
             H AE V   M  K     W +L+GG
Sbjct: 451 SLHYAEGVFCGMESKMVSS-WNALIGG 476



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 42/228 (18%)

Query: 13  EALQILHQISHPSPSIYSSLIQF------CRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           +AL + HQ+   S  I+   I        C Q  AL  GK++H     S      F++  
Sbjct: 586 DALDMFHQM--LSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCS 643

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAKCG +  +Q +FD +  +   ++N +I+G+                        
Sbjct: 644 LIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYG----------------------- 680

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
              I G+ R     +A++L++ MQN      +  T  ++L+A +    +  G E  G + 
Sbjct: 681 ---IHGHGR-----KAIELFKSMQN-AGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQ 731

Query: 187 RT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMI 232
              G       ++ + DM G+ G +NEA ++ +++ D+ D   W++++
Sbjct: 732 SLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLL 779



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 1   AIDILCNQRRLKEALQILHQI-SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
            +D+L    RL EAL++++++   P   I+SSL+  CR  R L+ G+KV + L   G   
Sbjct: 746 VVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDK 805

Query: 60  G---VFISNCLLDMYAKCGNISDAQTLFDEMQE 89
               V ISN     YA+ G   + + +   M+E
Sbjct: 806 AENYVLISN----FYARLGKWDEVRKMRQRMKE 834


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 229/380 (60%), Gaps = 2/380 (0%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +IS     GS+  AR LF  +P  D+F + +++    ++   I+ +  YR M  F  +  
Sbjct: 65  LISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRML-FSGAPQ 123

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + +T +SV+ A + +  LRLGKEIH ++M  G+ SD  V +AL  +Y K   +  A+++F
Sbjct: 124 SNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVF 183

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D M  R +++W ++I  Y Q G  +E   LF  +++SG +P++ T   +L++C+   A +
Sbjct: 184 DAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD 243

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G  +H Y    G+D      ++L++MY++CGNV  +++VF+ M   ++V+WT++I+GY 
Sbjct: 244 FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYG 303

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +G   +A+E F  +   G +P++I FV VL+AC H+GL+D G + F S+KE +GL    
Sbjct: 304 MHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGV 363

Query: 398 DHYACIVDLLARSGRFHEAEDVISK-MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           +H  C+VD+  R+G  ++A   I K +P +P   +W S+LG CR+H N DL  + AE + 
Sbjct: 364 EHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVL 423

Query: 457 EIEPENPATYVTMANIYASA 476
            +EPENP  YV ++NIYA A
Sbjct: 424 SVEPENPGHYVMLSNIYALA 443



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 180/357 (50%), Gaps = 42/357 (11%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S+I+ C    AL  GK++HSH+   G+   +++   L+ +YAK  ++  A+ +FD M 
Sbjct: 128 FTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMP 187

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +R + ++N++ISG+ + G  +++  LF  M          M SG+    QP  A      
Sbjct: 188 QRTIIAWNSLISGYDQNGLPQESIGLFHLM----------MESGF----QPDSA------ 227

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                       T+ S+LS+ S +  L  G  +H Y    GFD + V+ ++L +MY +CG
Sbjct: 228 ------------TIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG 275

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           ++++AR++FD M +R+VV+WTAMI  Y   G   +   LF+E+   G RPN  TF  VL+
Sbjct: 276 NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 335

Query: 269 ACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENS----KKVFNGMPR 323
           ACA     + G++V   M    G  P       +V M+ + G + ++    KK     P 
Sbjct: 336 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 395

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDK 379
           P +  WTS++     +   D  ++  E +L    + P H V +  + A   AG +D+
Sbjct: 396 PAV--WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYAL--AGRMDR 448



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 153/289 (52%), Gaps = 5/289 (1%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           LR  +++H +I+ +G      + + L  +    GSI  AR++F  + + D   + +++  
Sbjct: 40  LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKV 99

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
             + G   +    +  ++ SG   + +TF  V+ ACAD +A  LGK++H ++   GY   
Sbjct: 100 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSD 159

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            +  +AL+ +Y+K  +++ +KKVF+ MP+  +++W SLI+GY QNG+P +++  F L+++
Sbjct: 160 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 219

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG QPD    V +L++C+  G +D G  + H   + +G          ++++  R G   
Sbjct: 220 SGFQPDSATIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 278

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +A +V   M  + +   W +++ G  +HG     ++A E   E+    P
Sbjct: 279 KAREVFDSMKER-NVVTWTAMISGYGMHG---YGRQAMELFTEMRAYGP 323



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 41/217 (18%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P  +   SL+  C Q  AL+ G  +H +   +GF   V +   L++MY +CGN+S A+ 
Sbjct: 223 QPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKARE 282

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQ 138
           +FD M+ER+V ++  MISG+   G   QA  LF EM    P+ +N ++ A++S       
Sbjct: 283 VFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGL 342

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             +   ++  M                             KE +G +   G + +     
Sbjct: 343 IDDGRRVFSSM-----------------------------KEAYGLV--PGVEHN----V 367

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRD--VVSWTAMIG 233
            + DM+G+ G +N+A Q   K + ++     WT+M+G
Sbjct: 368 CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 404


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 225/376 (59%), Gaps = 2/376 (0%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K G L+ AR+LF EMP R+  +W A+++  V   +P+E ++ Y  ++     + N  +
Sbjct: 164 YFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLRE-AGGLPNVVS 222

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
             +  +A +    L LG++ HG++++ GF+ D  V +++ D YGKC    +AR +FD M 
Sbjct: 223 ACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMG 282

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R+ VSW +M+  Y Q G  EE FA +    +SG  P  F  +  L  CA      LG+ 
Sbjct: 283 VRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA 342

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    R   D   F ASALV MY KCG VE+++++F   P+ +LV+W ++I GYA  G 
Sbjct: 343 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 402

Query: 342 PDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              AL  F+ +++SG T P++I  V V+T+C+  GL   G + F +++E+ G+    +HY
Sbjct: 403 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 462

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           AC+VDLL R+G   +A +VI  MPM+P   +W +LLG C++HG  +L + AAE LFE++P
Sbjct: 463 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 522

Query: 461 ENPATYVTMANIYASA 476
           ++   +V ++N++ASA
Sbjct: 523 QDSGNHVLLSNMFASA 538



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 172/360 (47%), Gaps = 8/360 (2%)

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL-SAVSAIQCLRL 177
           P     S+TA ISG  ++ +P+ AL  +  M        N FT  S   +A SA     +
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRL-GLRPNDFTFPSAFKAAASAPPRSTI 136

Query: 178 GKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           G +IH   +R G+   D  V  A  DMY K G +  AR +F +M +R+VV+W A++    
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 196

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
            +GR  E    +  L ++G  PN  +     NACA      LG+Q HG++ + G++    
Sbjct: 197 LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS 256

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             +++V  Y KC     ++ VF+GM   + VSW S++A YAQNG  ++A   +    +SG
Sbjct: 257 VLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSG 316

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
            +P   +    LT C  AGL+   L +  H++  +  +       + +VD+  + G   +
Sbjct: 317 EEPTDFMVSSALTTC--AGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVED 374

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           AE +  + P + +   W +++GG    G+   A    + +     E    Y+T+ N+  S
Sbjct: 375 AEQIFYETPQR-NLVTWNAMIGGYAHIGDAQNALLVFDDMIR-SGETAPNYITLVNVITS 432



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 151/320 (47%), Gaps = 37/320 (11%)

Query: 26  PSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P++ S+   F  C     L  G++ H  +   GF+  V + N ++D Y KC     A+ +
Sbjct: 218 PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAV 277

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M  R+  S+ +M++ + + G+ E+A              + A +       +P +  
Sbjct: 278 FDGMGVRNSVSWCSMVAAYAQNGAEEEA--------------FAAYLGARRSGEEPTD-- 321

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                           F +SS L+  + +  L LG+ +H   +R+  D++  V SAL DM
Sbjct: 322 ----------------FMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDM 365

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           YGKCG + +A QIF +   R++V+W AMIG Y   G  +    +F ++I+SG   PN  T
Sbjct: 366 YGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYIT 425

Query: 263 FAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
              V+ +C+     + G ++   M  R G +P +   + +V +  + G  E + +V  GM
Sbjct: 426 LVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGM 485

Query: 322 P-RPDLVSWTSLIAGYAQNG 340
           P RP +  W +L+     +G
Sbjct: 486 PMRPSISVWGALLGACKMHG 505



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 5/278 (1%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS-DEVVWSALSDMYGKCGSINEARQIFDKM 220
           L++   +  A +  RLG+  H   +R    +    + + L ++Y K      A       
Sbjct: 18  LAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASD 77

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE-LG 279
               VVS+TA I    Q GR     + F+ +++ G+RPN FTF     A A       +G
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIG 137

Query: 280 KQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            Q+H    R GY P   F + A + MY K G ++ ++ +F  MP  ++V+W +++     
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +G P + +E +  L ++G  P+ +       AC  A  +  G Q FH    K G      
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQ-FHGFVVKCGFEMDVS 256

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
               +VD   +     +A  V   M ++ +   W S++
Sbjct: 257 VLNSMVDFYGKCRCAGKARAVFDGMGVR-NSVSWCSMV 293



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 43/228 (18%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + SS +  C     L  G+ +H+    S     +F+++ L+DMY KCG + DA+ +
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F E  +R++ ++N MI G+   G  + A  +FD+M               +R  +     
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDM---------------IRSGE----- 418

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM------RTGFDSDEVVW 197
                      +  N  TL +V+++     C R G    GY +      R G +     +
Sbjct: 419 -----------TAPNYITLVNVITS-----CSRGGLTKDGYELFETMRERFGIEPRTEHY 462

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIGRYFQEGRREEG 244
           + + D+ G+ G   +A ++   M  R  +S W A++G     G+ E G
Sbjct: 463 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELG 510


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/481 (31%), Positives = 258/481 (53%), Gaps = 64/481 (13%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y   +Q C +NR L   K +H+H+   G      ++N L+++Y KC              
Sbjct: 6   YLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKC-------------- 51

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                            G+   A  +FDEMP RD+ +W ++++   + N   + L ++  
Sbjct: 52  -----------------GAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSS 94

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           + +      + F  S+++ A + +  +  G+++H + + + + +DEVV S+L DMY KCG
Sbjct: 95  VGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCG 154

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF---------------SELIK 253
            +N A+ +FD +  ++ +SWTAM+  Y + GR+EE   LF               S  ++
Sbjct: 155 LLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQ 214

Query: 254 SGIRPNAFT-----------------FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           SG    AF+                  + ++ ACA+ AA   G+QVHG +  +G+D   F
Sbjct: 215 SGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVF 274

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
            ++AL+ MY+KC +V  +K +F+ M   D+VSWTSLI G AQ+G  +KAL  ++ ++  G
Sbjct: 275 ISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHG 334

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
            +P+ + FVG++ AC+H G V+KG + F S+ + +G+  +  HY C++DLL RSG   EA
Sbjct: 335 VKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEA 394

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIYAS 475
           E++I  MP  PD+  WA+LL  C+  G   +  R A+ L    + ++P+TY+ ++NIYAS
Sbjct: 395 ENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYAS 454

Query: 476 A 476
           A
Sbjct: 455 A 455



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 194/344 (56%), Gaps = 2/344 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   ++S+L++ C    +++ G++VH H   S +     + + L+DMYAKCG ++ A+ +
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD ++ ++  S+  M+SG+ K G  E+A  LF  +P ++ +SWTA+ISG+V+  + +EA 
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAF 222

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  M+     + +   LSS++ A + +     G+++HG ++  GFDS   + +AL DM
Sbjct: 223 SVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDM 282

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +  A+ IF +M  RDVVSWT++I    Q G+ E+  AL+ +++  G++PN  TF
Sbjct: 283 YAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTF 342

Query: 264 AGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            G++ AC+     E G+++   MT+  G  P     + L+ +  + G ++ ++ + + MP
Sbjct: 343 VGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMP 402

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
             PD  +W +L++   + G     +   + L+ S    D   ++
Sbjct: 403 FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYI 446


>gi|357508205|ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499406|gb|AES80609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 709

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 260/471 (55%), Gaps = 7/471 (1%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF-KPGVFISNCL 67
           + L  ALQ+  ++   +   +SS++  C  N    +   + S +   GF KP  F     
Sbjct: 54  KDLTSALQLFDEMPERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSA 113

Query: 68  LDMYAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           L   +   N++ A  ++  +     E +V   N  ++   + G L +A  +F+  P RD 
Sbjct: 114 LQACSLSENVTQAYQIYSLVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSPIRDT 173

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W  M+ GY+ ++   E + ++    N E    ++FT +S L+ ++ I  L++G ++H 
Sbjct: 174 VTWNTMMGGYLEFSS--EQIPVFWRYMNREGVKPDEFTFASALTGLATISSLKMGMQVHA 231

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            ++R+G+  D  V ++L DMY K   + E  + FD++  +DV SWT M     Q G    
Sbjct: 232 QLVRSGYGDDICVGNSLVDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRM 291

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             A+ +++ K G++PN FT A  LNACA  A+ E GKQ HG   ++G D      +AL+ 
Sbjct: 292 ALAVIAKMKKMGVKPNKFTLATALNACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLD 351

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+KCG ++++  VF       +VSWT++I   AQNG P +AL+ F+ + ++  +P++I 
Sbjct: 352 MYAKCGCMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYIT 411

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ VL AC+  G VD+G +Y  S+ + +G+    DHY C+V +L R+G   EA+++I +M
Sbjct: 412 FICVLYACSQGGFVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGRAGLIKEAKELILRM 471

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           P  P   +W +LL  C+IHG+++  K AAE   + +  +P++YV ++N+ A
Sbjct: 472 PFHPGVRVWQTLLSACQIHGDVETGKLAAEHAIKHDKNDPSSYVLLSNMLA 522



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 18/230 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+    ++L+E  +   +I H     ++ +   C Q         V + +K  G KP  
Sbjct: 249 VDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMALAVIAKMKKMGVKPNK 308

Query: 62  FISNCLLDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           F     L+  A   ++ + +           + DVC  N ++  + K G ++ A  +F  
Sbjct: 309 FTLATALNACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCGCMDSAWTVFRS 368

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLR 176
              R   SWT MI    +  QP EAL ++  M+  E SV  N  T   VL A     C +
Sbjct: 369 TNSRSVVSWTTMIMACAQNGQPGEALQIFDEMK--ETSVEPNYITFICVLYA-----CSQ 421

Query: 177 LGKEIHGYIMRTGFDSD------EVVWSALSDMYGKCGSINEARQIFDKM 220
            G    G+   +  D D      E  +  +  + G+ G I EA+++  +M
Sbjct: 422 GGFVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGRAGLIKEAKELILRM 471


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 260/454 (57%), Gaps = 36/454 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +++ + C +   L  GK +H     +GF   V ++N L+ MY+KCG   +   LFDEM E
Sbjct: 132 ATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFGECLKLFDEMPE 191

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           R+V S+N ++SG+   G     RN   E            +SG+V+  Q IE L      
Sbjct: 192 RNVGSWNVILSGYADSGD----RNFDKE------------VSGFVKDMQ-IEGLK----- 229

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLR-LGKEIHGYIMR----TGFDSDEVVWSALSDMY 204
                   + FT+SS+L+  +     R  G+E+HG+I+R     G  ++  +   L DMY
Sbjct: 230 -------PDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMY 282

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFTF 263
            +   ++  R++FD+M  R+V +WTAMI  + Q G  EEG  LF E+ ++ G+ PN  + 
Sbjct: 283 SRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSL 342

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-GMP 322
             VL AC+  A     KQ+HGY  R  ++      +AL+ MYSKCG+++++K+VF  G  
Sbjct: 343 VSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSF 402

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           R D +SW+S+I+GY  +G  ++A+  +  +L+ G +PD I  VGVL+AC+ AGLVD+GL 
Sbjct: 403 RRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEGLC 462

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
            + S   K+ +  T +  AC+VD+L RSG+  +A D I  MPM+P   +W +++    IH
Sbjct: 463 IYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASIIH 522

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           GN ++   A   L ++EPENP+ YV+++N++AS+
Sbjct: 523 GNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASS 556



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 185/369 (50%), Gaps = 19/369 (5%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +IS +   G    +R +FD +  +  + W ++I+G+V+     EA   +  M      + 
Sbjct: 68  LISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFVKNRAYNEAFGWFYQMC-CRGVLL 126

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + +TL+++      I  L  GK IHG  ++TGF  D +V ++L  MY KCG   E  ++F
Sbjct: 127 DDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFGECLKLF 186

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRR---EEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           D+M +R+V SW  ++  Y   G R   +E      ++   G++P+AFT + +L  C  H 
Sbjct: 187 DEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLTLCNGHM 246

Query: 275 AE-ELGKQVHGYMTRI----GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
            + + G+++HG++ RI    G          L+ MYS+   V+  ++VF+ M   ++ +W
Sbjct: 247 GKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRMECRNVYAW 306

Query: 330 TSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTH-AGLVDKGLQYFHSI 387
           T++I G+ QNG  ++ L  F E+ ++ G +P+ +  V VL AC+  AGL   G++  H  
Sbjct: 307 TAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLT--GVKQIHGY 364

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
             +            ++D+ ++ G    A+ V      + D   W+S++ G  +HG    
Sbjct: 365 AIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHG---- 420

Query: 448 AKRAAEALF 456
             +  EA+F
Sbjct: 421 --KGEEAVF 427



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 22/286 (7%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L+L ++ H  I+  GF  +  + + L   Y   G    +R +FD +  + V  W ++I  
Sbjct: 43  LKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLING 102

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           + +     E F  F ++   G+  + +T A +   C +      GK +HG   + G+   
Sbjct: 103 FVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLD 162

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP--DKALEYFELL 352
              A++L+ MYSKCG      K+F+ MP  ++ SW  +++GYA +G    DK +  F   
Sbjct: 163 VIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKD 222

Query: 353 LK-SGTQPDHIVFVGVLTACT-HAGLVDKGLQYFHSIKEKHGLTY---------TADHYA 401
           ++  G +PD      +LT C  H G  D G       +E HG            T  H  
Sbjct: 223 MQIEGLKPDAFTVSSLLTLCNGHMGKRDHG-------RELHGFIVRIELAVGSGTEVHLG 275

Query: 402 -CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
            C++D+ +RS R      V  +M  + + + W +++ G   +G L+
Sbjct: 276 CCLIDMYSRSNRVDVGRRVFDRMECR-NVYAWTAMINGHVQNGALE 320


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 258/462 (55%), Gaps = 35/462 (7%)

Query: 18  LHQISHPSP--SIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNCLLDMYAKC 74
           L Q+S P    SI  SL+       ++     +H+  +KS  +  G FI + L+ MY K 
Sbjct: 52  LFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDG-FIGDRLVSMYFKL 110

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G   DAQ LFDEM  +D+ S+N+++SG +  G L    N F  M                
Sbjct: 111 GYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESG----------- 159

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
              QP                  N+ TL SV+SA + +  L  GK +HG +++ G     
Sbjct: 160 --RQP------------------NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKA 199

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            V ++L +MYGK G ++ A Q+F++M  R +VSW +M+  +   G  E+G  LF+ + ++
Sbjct: 200 KVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRA 259

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI P+  T   +L AC D       + +H Y+ R G++     A+AL+++Y+K G +  S
Sbjct: 260 GINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 319

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           + +F  +   D ++WT+++AGYA +    +A++ F+L++K G + DH+ F  +L+AC+H+
Sbjct: 320 EDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHS 379

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLV++G +YF  + E + +    DHY+C+VDLL RSGR  +A ++I  MPM+P   +W +
Sbjct: 380 GLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGA 439

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LLG CR++GN++L K  AE L  ++P +   Y+ ++NIY++A
Sbjct: 440 LLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 481



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 163/356 (45%), Gaps = 35/356 (9%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+     S++  C    AL+EGK +H  +   G      + N L++MY K G +  A  
Sbjct: 161 QPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 220

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF+EM  R + S+N+M+      G  E+  +LF+ M +          +G      P +A
Sbjct: 221 LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR----------AGI----NPDQA 266

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                             T+ ++L A +     R  + IH YI R GF++D ++ +AL +
Sbjct: 267 ------------------TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 308

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y K G +N +  IF+++ DRD ++WTAM+  Y       E   LF  ++K G+  +  T
Sbjct: 309 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 368

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F  +L+AC+     E GK+    M+ +   +P     S +V +  + G +E++ ++   M
Sbjct: 369 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 428

Query: 322 P-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           P  P    W +L+      G  +   E  E LL S    DH  ++ +    + AGL
Sbjct: 429 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLL-SLDPSDHRNYIMLSNIYSAAGL 483


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/454 (33%), Positives = 242/454 (53%), Gaps = 41/454 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + SL++ C     + EG  +H  +   G    ++++  L+++Y K G I  A+ +
Sbjct: 125 PDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKV 184

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD M ER+V S+  MI G++  G+L +A+ LFD MP+R+  SW A+I GY++      A 
Sbjct: 185 FDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAE 244

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             +  M                                         + + V ++ + D 
Sbjct: 245 KAFDEMP----------------------------------------EKNVVSFTTMIDG 264

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G +  AR +F K  +RD+++W+A+I  Y Q G+  E    F E+    ++P+ F  
Sbjct: 265 YAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVL 324

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENSKKVFNGMP 322
             ++ AC+     +L K V  Y TR   D   +   +AL+ M +KCGN+E +  +F  MP
Sbjct: 325 TSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMP 384

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
           + DL+S+ S++ G + +G  D+A+  FE +L     PD + F  +LTAC+ AGLVD+G  
Sbjct: 385 KRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWH 444

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
           YF  ++ K+ +  + DHYACIVDLL+RSGR  EA ++I  +P++     W +LLG C+++
Sbjct: 445 YFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLY 504

Query: 443 GNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            + +LA+  A  L EIEPEN   YV ++NIYA+A
Sbjct: 505 CDSELAEVVASRLIEIEPENAGNYVLLSNIYAAA 538



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 193/388 (49%), Gaps = 22/388 (5%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E+D       IS       +  + ++FD +     F W +++SGY    Q ++ + LY  
Sbjct: 58  EQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVR 117

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+  E+   +++T  S+L   ++   +  G  +HG I+R G D D  V ++L ++YGK G
Sbjct: 118 MKR-EDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGG 176

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            I+ AR++FD M +R+VVSWTAMI  Y   G   E   LF  + +  +        G + 
Sbjct: 177 LIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMK 236

Query: 269 ----ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
                 A+ A +E+ ++          +  SF  + ++  Y+K G++ +++ +F   P  
Sbjct: 237 MGDVKSAEKAFDEMPEK----------NVVSF--TTMIDGYAKAGDMLSARNLFQKAPER 284

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+++W++LI+GY QNG P++A++ F  +     +PD  V   ++ AC+  G +D   ++ 
Sbjct: 285 DIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLA-KWV 343

Query: 385 HSIKEKHGLTYTADHY-ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            S   +  +     H  A ++D+ A+ G    A  +  KMP K D   + S++ G  IHG
Sbjct: 344 DSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMP-KRDLISYCSVMQGLSIHG 402

Query: 444 NLDLAKRAAEALF--EIEPENPATYVTM 469
           + D A    E +   ++ P++ A  V +
Sbjct: 403 HGDQAVSLFERMLGEDLTPDDVAFTVIL 430



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 33/299 (11%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           ++H ++++ G + D  + +           I+ +  +FD+++      W +++  Y  + 
Sbjct: 47  QVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKL 106

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           +  +  +L+  + +    P+ +TF  +L  CA       G  +HG + R G D   +  +
Sbjct: 107 QFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTT 166

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +LV++Y K G ++ ++KVF+GM   ++VSWT++I GY+  G   +A   F+L+ +     
Sbjct: 167 SLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVAS 226

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA--DHYACIVDLLARSGRFHEA- 416
            + +  G +      G V    + F  + EK+ +++T   D YA   D+L+    F +A 
Sbjct: 227 WNAIIGGYM----KMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAP 282

Query: 417 -EDVI-------------------------SKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
             D+I                         S   +KPDKF+  SL+  C   GNLDLAK
Sbjct: 283 ERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAK 341


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/506 (31%), Positives = 266/506 (52%), Gaps = 57/506 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + S+++ CR    + +G K+H      GF   V+++  L+ +Y++   + +A+ L
Sbjct: 84  PDYRTFPSVLKACR---TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 140

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNL----------------------------- 114
           FDEM  RD+ S+N MISG+ + G+ ++A  L                             
Sbjct: 141 FDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGV 200

Query: 115 ----------------------FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                                 FD M  RD  SW ++I  Y    QP+ A+ L++ M+  
Sbjct: 201 TIHSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR-L 259

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSIN 211
                +  TL S+ S +S +  +R  + + G+ +R G F  D  + +A+  MY K G ++
Sbjct: 260 SRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVD 319

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNAC 270
            AR +F+ + + DV+SW  +I  Y Q G   E   +++ + + G I  N  T+  VL AC
Sbjct: 320 SARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPAC 379

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +   A   G ++HG + + G     F  ++L  MY KCG +E++  +F  +PR + V W 
Sbjct: 380 SQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWN 439

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +LIA +  +G  +KA+  F+ +L  G +PDHI FV +L+AC+H+GLVD+G   F  ++  
Sbjct: 440 TLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTD 499

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +G+T +  HY C+VD+  R+G+   A   I  M ++PD  +W +LL  CR+HGN+DL K 
Sbjct: 500 YGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKI 559

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
           A+E LFE+EPE+   +V ++N+YASA
Sbjct: 560 ASEHLFEVEPEHVGYHVLLSNMYASA 585



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 163/363 (44%), Gaps = 37/363 (10%)

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           FD +  RD ++W  MISGY R     E +  + +         +  T  SVL A   +  
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID 101

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
              G +IH   ++ GF  D  V ++L  +Y +  ++  AR +FD+M  RD+ SW AMI  
Sbjct: 102 ---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISG 158

Query: 235 YFQEGRREEGFALFSELIKSGIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
           Y Q G  +E   L      +G+R  ++ T   +L+AC +      G  +H Y  + G + 
Sbjct: 159 YCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE- 212

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
                S L         + + +KVF+ M   DL+SW S+I  Y  N  P +A+  F+ + 
Sbjct: 213 -----SEL---------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR 258

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVD--KGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
            S  QPD +  + + +  +  G +   + +Q F ++++   L       A +V + A+ G
Sbjct: 259 LSRIQPDCLTLISLASILSQLGDIRACRSVQGF-TLRKGWFLEDITIGNAVVV-MYAKLG 316

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-----NPATY 466
               A  V + +P   D   W +++ G   +G    A  A E    +E E     N  T+
Sbjct: 317 LVDSARAVFNWLP-NTDVISWNTIISGYAQNG---FASEAIEMYNIMEEEGEIAANQGTW 372

Query: 467 VTM 469
           V++
Sbjct: 373 VSV 375


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 229/380 (60%), Gaps = 2/380 (0%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +IS     GS+  AR LF  +P  D+F + +++    ++   I+ +  YR M  F  +  
Sbjct: 129 LISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRML-FSGAPQ 187

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + +T +SV+ A + +  LRLGKEIH ++M  G+ SD  V +AL  +Y K   +  A+++F
Sbjct: 188 SNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVF 247

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           D M  R +++W ++I  Y Q G  +E   LF  +++SG +P++ T   +L++C+   A +
Sbjct: 248 DAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD 307

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G  +H Y    G+D      ++L++MY++CGNV  +++VF+ M   ++V+WT++I+GY 
Sbjct: 308 FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYG 367

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +G   +A+E F  +   G +P++I FV VL+AC H+GL+D G + F S+KE +GL    
Sbjct: 368 MHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGV 427

Query: 398 DHYACIVDLLARSGRFHEAEDVISK-MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           +H  C+VD+  R+G  ++A   I K +P +P   +W S+LG CR+H N DL  + AE + 
Sbjct: 428 EHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVL 487

Query: 457 EIEPENPATYVTMANIYASA 476
            +EPENP  YV ++NIYA A
Sbjct: 488 SVEPENPGHYVMLSNIYALA 507



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 180/357 (50%), Gaps = 42/357 (11%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++S+I+ C    AL  GK++HSH+   G+   +++   L+ +YAK  ++  A+ +FD M 
Sbjct: 192 FTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMP 251

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           +R + ++N++ISG+ + G  +++  LF  M          M SG+    QP  A      
Sbjct: 252 QRTIIAWNSLISGYDQNGLPQESIGLFHLM----------MESGF----QPDSA------ 291

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                       T+ S+LS+ S +  L  G  +H Y    GFD + V+ ++L +MY +CG
Sbjct: 292 ------------TIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG 339

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           ++++AR++FD M +R+VV+WTAMI  Y   G   +   LF+E+   G RPN  TF  VL+
Sbjct: 340 NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 399

Query: 269 ACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENS----KKVFNGMPR 323
           ACA     + G++V   M    G  P       +V M+ + G + ++    KK     P 
Sbjct: 400 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 459

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDK 379
           P +  WTS++     +   D  ++  E +L    + P H V +  + A   AG +D+
Sbjct: 460 PAV--WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYAL--AGRMDR 512



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 153/289 (52%), Gaps = 5/289 (1%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           LR  +++H +I+ +G      + + L  +    GSI  AR++F  + + D   + +++  
Sbjct: 104 LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKV 163

Query: 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
             + G   +    +  ++ SG   + +TF  V+ ACAD +A  LGK++H ++   GY   
Sbjct: 164 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSD 223

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            +  +AL+ +Y+K  +++ +KKVF+ MP+  +++W SLI+GY QNG+P +++  F L+++
Sbjct: 224 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 283

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
           SG QPD    V +L++C+  G +D G  + H   + +G          ++++  R G   
Sbjct: 284 SGFQPDSATIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 342

Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           +A +V   M  + +   W +++ G  +HG     ++A E   E+    P
Sbjct: 343 KAREVFDSMKER-NVVTWTAMISGYGMHG---YGRQAMELFTEMRAYGP 387



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 41/217 (18%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P  +   SL+  C Q  AL+ G  +H +   +GF   V +   L++MY +CGN+S A+ 
Sbjct: 287 QPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKARE 346

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQ 138
           +FD M+ER+V ++  MISG+   G   QA  LF EM    P+ +N ++ A++S       
Sbjct: 347 VFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGL 406

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             +   ++  M                             KE +G +   G + +     
Sbjct: 407 IDDGRRVFSSM-----------------------------KEAYGLV--PGVEHN----V 431

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRD--VVSWTAMIG 233
            + DM+G+ G +N+A Q   K + ++     WT+M+G
Sbjct: 432 CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 468


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 258/477 (54%), Gaps = 39/477 (8%)

Query: 4   ILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK 58
           +LCN  R +EA ++   +          S Y +L++ C + +++   K+V+  + S+GF+
Sbjct: 98  VLCN--RFREAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFE 155

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P  ++ N +L M+ KCG I DA                               R LFDE+
Sbjct: 156 PEQYMMNRILLMHVKCGMIIDA-------------------------------RRLFDEI 184

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
           P+R+ +S+ ++ISG+V +   +EA +L++MM   E S     T + +L A + +  + +G
Sbjct: 185 PERNLYSYYSIISGFVNFGNYVEAFELFKMMWE-ELSDCETHTFAVMLRASAGLGSIYVG 243

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K++H   ++ G   +  V   L DMY KCG I +AR  F+ M ++  V+W  +I  Y   
Sbjct: 244 KQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALH 303

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G  EE   L  ++  SG+  + FT + ++      A  EL KQ H  + R G++    A 
Sbjct: 304 GYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVAN 363

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +ALV  YSK G V+ ++ VF+ +PR +++SW +L+ GYA +G    A++ FE ++ +   
Sbjct: 364 TALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVA 423

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+H+ F+ VL+AC ++GL ++G + F S+ E HG+   A HYAC+++LL R G   EA  
Sbjct: 424 PNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIA 483

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            I + P+K    +WA+LL  CR+  NL+L +  AE L+ + PE    YV M N+Y S
Sbjct: 484 FIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNS 540


>gi|297742233|emb|CBI34382.3| unnamed protein product [Vitis vinifera]
          Length = 705

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 173/513 (33%), Positives = 263/513 (51%), Gaps = 54/513 (10%)

Query: 10  RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           R+ E LQ       P+    + ++Q C Q R L+  + +H H+  +GF    F+ N L+D
Sbjct: 133 RMLETLQ-------PNEYTLAVILQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLID 185

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN------ 123
            Y K G +  A+ L   +  RDV S+ ++ISG    G +E+A   F EM Q D       
Sbjct: 186 GYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGMVEKALLFFFEM-QEDGVSPNTV 244

Query: 124 -----------------FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF------ 160
                            F W   +     + + +  ++    M +        F      
Sbjct: 245 TILSILQACSLINEWQVFQWVHGLVMKAEWRENVFVMNSLVEMYSINGYFKEGFQIFCNF 304

Query: 161 ------------TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                       T++++L   S  +CL+LG++IHGY ++ GF    +V ++L  MY +  
Sbjct: 305 CFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAENE 364

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG----IRPNAFTFA 264
             + A Q+F KM  RD+VSW  MI    +     +   L SE+  +G    I P+  T  
Sbjct: 365 RDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSEVHSNGGSDMIYPDFVTIL 424

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
             + AC+  A+ +LG+ +HGY+TR G     F  ++LV MY KCG +  ++KV   MP  
Sbjct: 425 ASIQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVR 484

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQY 383
           DL SW SLIA Y  NG    AL  F+ L  +G  +P+ I F  +L+AC HAGLV +G + 
Sbjct: 485 DLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFTNILSACAHAGLVAEGFEI 544

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+K ++ L    +H+AC+VDLL R+GR  EAE  I KMP +P   +W +LLGGC + G
Sbjct: 545 FKSMKREYSLEPRIEHFACMVDLLGRAGRLEEAEAFIQKMPFEPGPEVWGALLGGCGLFG 604

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           NLD+A+R A+ L+ +EP++ A  V ++N+YAS 
Sbjct: 605 NLDIAERVAKKLYILEPKSRAWRVALSNVYASV 637



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 215/515 (41%), Gaps = 114/515 (22%)

Query: 8   QRRLKEALQILHQISHPSPSIYS-SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           Q RL E       I   S S+ +  ++  C  NR L  G  +H+++  SG    VF++N 
Sbjct: 23  QPRLAEPRDKYPHIHTLSDSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANS 82

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+DMYAKCG I                               E A  LFD MP +   SW
Sbjct: 83  LMDMYAKCGRI-------------------------------EDAAKLFDHMPDKTVVSW 111

Query: 127 TAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           T+M+SG+ +     E + ++ RM++  +    N++TL+ +L A +  + L+L + IH +I
Sbjct: 112 TSMMSGHCQRGAFDEVISIFWRMLETLQ---PNEYTLAVILQACAQKRDLKLVQLIHCHI 168

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++TGF  D  + ++L D Y K G++  A ++  +++ RDVVSWT++I      G  E+  
Sbjct: 169 IKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGMVEKAL 228

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
             F E+ + G+ PN  T   +L AC+     ++ + VHG + +  +    F  ++LV MY
Sbjct: 229 LFFFEMQEDGVSPNTVTILSILQACSLINEWQVFQWVHGLVMKAEWRENVFVMNSLVEMY 288

Query: 306 SKCGNVENSKKVF---------------------NGMPR--------------------P 324
           S  G  +   ++F                      G                       P
Sbjct: 289 SINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGFFP 348

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFE--------------------------LLLKS--- 355
             +   SLI  YA+N   D A + F                           L+L S   
Sbjct: 349 CTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSEVH 408

Query: 356 ---GTQPDHIVFVGVLT---ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
              G+   +  FV +L    AC+    +  G Q  H    + GL         +VD+  +
Sbjct: 409 SNGGSDMIYPDFVTILASIQACSSLASLQLG-QVIHGYITRAGLICDIFVQNSLVDMYGK 467

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            GR H AE V  +MP++ D   W SL+    I+GN
Sbjct: 468 CGRLHLAEKVSEEMPVR-DLGSWNSLIAAYGINGN 501



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 173/308 (56%), Gaps = 19/308 (6%)

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
           +++S+  T   VLS+ +A + LRLG  IH  I+++G  ++  V ++L DMY KCG I +A
Sbjct: 37  HTLSDSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDA 96

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
            ++FD M D+ VVSWT+M+  + Q G  +E  ++F  ++++ ++PN +T A +L ACA  
Sbjct: 97  AKLFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLET-LQPNEYTLAVILQACAQK 155

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
              +L + +H ++ + G+   +F  ++L+  Y+K G +  ++K+   +   D+VSWTS+I
Sbjct: 156 RDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVI 215

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           +G   NGM +KAL +F  + + G  P+ +  + +L AC+   L+++  Q F  +   HGL
Sbjct: 216 SGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQACS---LINE-WQVFQWV---HGL 268

Query: 394 TYTADH------YACIVDLLARSGRFHEAEDVISKMPMKPD-KFL----WASLLGGCRIH 442
              A+          +V++ + +G F E   +      + D ++L     A+LL GC   
Sbjct: 269 VMKAEWRENVFVMNSLVEMYSINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHS 328

Query: 443 GNLDLAKR 450
             L L ++
Sbjct: 329 KCLKLGEQ 336



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           ++ T   VL++CA +    LG  +H  + + G     F A++L+ MY+KCG +E++ K+F
Sbjct: 41  DSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLF 100

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + MP   +VSWTS+++G+ Q G  D+ +  F  +L++  QP+      +L AC     + 
Sbjct: 101 DHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLET-LQPNEYTLAVILQACAQKRDL- 158

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           K +Q  H    K G    A     ++D   +SG    AE ++ ++  + D   W S++ G
Sbjct: 159 KLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICR-DVVSWTSVISG 217

Query: 439 CRIHGNLDLAKRAAEALFEIEPE--NPATYVTMANIYASA 476
           C ++G   + ++A    FE++ +  +P T   ++ + A +
Sbjct: 218 CVLNG---MVEKALLFFFEMQEDGVSPNTVTILSILQACS 254


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 258/472 (54%), Gaps = 43/472 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++L+  S+PS    S+++  C   ++L+ G + H+++          + + L  +Y+KCG
Sbjct: 158 EMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCG 217

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                                           LE A   F  + +++  SWT+ +S    
Sbjct: 218 R-------------------------------LEDALKTFSRIREKNVISWTSAVSACAD 246

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
              P++ L L+  M   +    N+FTL+S LS    I  L LG +++   ++ G++S+  
Sbjct: 247 NGAPVKGLRLFVEMIAVDIK-PNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLR 305

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE-----------GRREEG 244
           V ++L  +Y K G I EA ++F++M D  +V+W AMI  + Q             R  E 
Sbjct: 306 VRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEA 365

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             LFS+L  SG++P+ FT + VL+ C+   A E G+Q+H    + G+      +++L+ M
Sbjct: 366 LKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISM 425

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YSKCG++E + K F  M    +++WTS+I G++Q+GM  +AL  FE +  +G +P+ + F
Sbjct: 426 YSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTF 485

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL+AC+HAG+V + L YF  +++K+ +    DHY C+VD+  R GR  +A + I KM 
Sbjct: 486 VGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMN 545

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +P +F+W++ + GC+ HGNL+L   AAE L  ++P++P TYV + N+Y SA
Sbjct: 546 YEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSA 597



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 219/452 (48%), Gaps = 48/452 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L+Q C   R+  E + VH H+  +G     F+ + L+++YAKCGN+ D         
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMED--------- 120

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                 AR +FD M +R+  +WT ++ G+V+ +QP  A+ +++ 
Sbjct: 121 ----------------------ARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQE 158

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M  +  S  + +TLS+VL A S++Q L+LG + H YI++   D D  V SAL  +Y KCG
Sbjct: 159 ML-YAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCG 217

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +A + F ++ +++V+SWT+ +      G   +G  LF E+I   I+PN FT    L+
Sbjct: 218 RLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALS 277

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            C +  + ELG QV+    + GY+      ++L+++Y K G +  + ++FN M    +V+
Sbjct: 278 QCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVT 337

Query: 329 WTSLIAGYAQNGMPDK-----------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           W ++IAG+AQ     K           AL+ F  L  SG +PD      VL+ C+    +
Sbjct: 338 WNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAI 397

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           ++G Q  H+   K G          ++ + ++ G    A     +M  +     W S++ 
Sbjct: 398 EQGEQ-IHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRT-MIAWTSMIT 455

Query: 438 GCRIHGNLDLAKRAAE--ALFEIEPENPATYV 467
           G   HG    A    E  +L  + P N  T+V
Sbjct: 456 GFSQHGMSQQALHIFEDMSLAGVRP-NAVTFV 486



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 107/211 (50%), Gaps = 25/211 (11%)

Query: 3   DILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK 58
           D L    R  EAL++  +++     P     SS++  C +  A+E+G+++H+    +GF 
Sbjct: 354 DNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFL 413

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
             V +S  L+ MY+KCG+I  A   F EM  R + ++ +MI+GF++ G  +QA ++F++M
Sbjct: 414 SDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDM 473

Query: 119 P----QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
                + +  ++  ++S         +AL+ + +MQ        K+ +     A+   +C
Sbjct: 474 SLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQ-------KKYKIK---PAMDHYEC 523

Query: 175 L-----RLGK--EIHGYIMRTGFDSDEVVWS 198
           +     RLG+  +   +I +  ++  E +WS
Sbjct: 524 MVDMFVRLGRLEQALNFIKKMNYEPSEFIWS 554


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 255/476 (53%), Gaps = 46/476 (9%)

Query: 11   LKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
            ++EAL+   ++    + P+  I  + +  C +      G ++H+ +  +GF+  +F+++ 
Sbjct: 1297 VREALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSA 1356

Query: 67   LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
            L+D+YAKC  I DA                               + +FD M + D  SW
Sbjct: 1357 LVDLYAKCDAIVDA-------------------------------KRVFDGMEKHDQVSW 1385

Query: 127  TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI-----QCLRLGKEI 181
            T++ISG+ +  +  EA+  ++ M   +    N  T  S +SA + +     QC  L    
Sbjct: 1386 TSIISGFSKNGRGKEAILFFKEMLGSQIK-PNCVTYVSXISACTGLETIFDQCALL---- 1440

Query: 182  HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
            H ++++ GF     V S L D Y KCG I++A  +F   ++RD + + +MI  Y Q    
Sbjct: 1441 HAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXG 1500

Query: 242  EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
            EE   LF Z+  +G+ P   T   +LNAC      + G+QVH  + ++G +   F  SAL
Sbjct: 1501 EEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSAL 1560

Query: 302  VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE-LLLKSGTQPD 360
            + MYSKCG+++ ++ VF      + V WTS+I GYAQ+G   + L  FE L+ + G  PD
Sbjct: 1561 LDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPD 1620

Query: 361  HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            HI F  VLTAC HAG +DKG+ YF+ ++  +GL    D YAC+VDL  R+G   +A++++
Sbjct: 1621 HICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELM 1680

Query: 421  SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
               P +P+  +W S L  C+++G  +L + AA+ LF++EP + A YV MA+IYA A
Sbjct: 1681 EAXPXEPNSVMWGSFLSSCKLYGEAELGREAADKLFKMEPCSTAPYVAMASIYAQA 1736



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 121/261 (46%), Gaps = 15/261 (5%)

Query: 12   KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
            +EAL++  Z+ +    P+    +S++  C     L++G++VHS +   G +  VF+ + L
Sbjct: 1501 EEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSAL 1560

Query: 68   LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS-- 125
            LDMY+KCG+I +A+ +F +  E++   + +MI+G+ + G   +   LF+ +   + F+  
Sbjct: 1561 LDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPD 1620

Query: 126  ---WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
               +TA+++         + +D +  M+     V +    + ++        LR  KE+ 
Sbjct: 1621 HICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKEL- 1679

Query: 183  GYIMRTGFDSDEVVWSAL---SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
              +     + + V+W +      +YG+     EA     KM       + AM   Y Q G
Sbjct: 1680 --MEAXPXEPNSVMWGSFLSSCKLYGEAELGREAADKLFKMEPCSTAPYVAMASIYAQAG 1737

Query: 240  RREEGFALFSELIKSGIRPNA 260
               E   +   + + G+R +A
Sbjct: 1738 LWSEVVEIRKLMKQKGLRKSA 1758


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 240/415 (57%), Gaps = 40/415 (9%)

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           V  S  ++    + G + +A+ +FDEM+ER+V ++ TMI+G+ +   ++ AR LF+ MP+
Sbjct: 172 VVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           +   SWT+M+ GY    +  +A + + +M                +  V A   + +G  
Sbjct: 232 KTEVSWTSMLLGYTLSGRIEDAEEFFEVMP---------------MKPVIACNAMIVG-- 274

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                                  +G+ G I++AR++FD M DRD  +W  MI  Y ++G 
Sbjct: 275 -----------------------FGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGF 311

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             E   LF+++ K G+RP+  +   +L+ CA  A+ + G+QVH ++ R  +D   + AS 
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASV 371

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY KCG +  +K VF+     D++ W S+I+GYA +G+ ++AL+ F  +  SGT P+
Sbjct: 372 LMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPN 431

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            +  + +LTAC++AG +++GL+ F S++ K  +T T +HY+C VD+L R+G+  +A ++I
Sbjct: 432 KVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELI 491

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             M +KPD  +W +LLG C+ H  LDLA+ AA+ LFE EP+N  TYV +++I AS
Sbjct: 492 ESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINAS 546



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 172/344 (50%), Gaps = 9/344 (2%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LC + R+ EA  I  ++   +   ++++I   RQN  ++  +K+   +     K  V  +
Sbjct: 182 LCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE---KTEVSWT 238

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           + LL  Y   G I DA+  F+ M  + V + N MI GF + G + +AR +FD M  RDN 
Sbjct: 239 SMLLG-YTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHG 183
           +W  MI  Y R    +EALDL+  MQ  +  V   F +L S+LS  + +  L+ G+++H 
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQ--KQGVRPSFPSLISILSVCATLASLQYGRQVHA 355

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           +++R  FD D  V S L  MY KCG + +A+ +FD+   +D++ W ++I  Y   G  EE
Sbjct: 356 HLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEE 415

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALV 302
              +F E+  SG  PN  T   +L AC+     E G ++   M ++    P     S  V
Sbjct: 416 ALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTV 475

Query: 303 HMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKA 345
            M  + G V+ + ++   M  +PD   W +L+     +   D A
Sbjct: 476 DMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLA 519



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 184/386 (47%), Gaps = 33/386 (8%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++  Y   G   +A+ LFDEM ER+V S+N ++SG+ K   + +ARN+F+ MP+R+  
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 125 SWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
           SWTAM+ GY++     EA  L+ RM +  E S +  F           I   R+ K    
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFG--------GLIDDGRIDKARKL 163

Query: 184 YIMRTGFDSDEVVWSALSDMYGKC--GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           Y M    D    V ++ + + G C  G ++EAR IFD+M +R+VV+WT MI  Y Q  R 
Sbjct: 164 YDMMPVKD----VVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRV 219

Query: 242 EEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
           +    LF  +  K+ +   +      L+   + A E        +   +   P   A +A
Sbjct: 220 DVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE--------FFEVMPMKPV-IACNA 270

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           ++  + + G +  +++VF+ M   D  +W  +I  Y + G   +AL+ F  + K G +P 
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330

Query: 361 HIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAE 417
               + +L+ C     +  G Q + H ++      +  D Y  + ++ +  + G   +A+
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVR----CQFDDDVYVASVLMTMYVKCGELVKAK 386

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHG 443
            V  +   K D  +W S++ G   HG
Sbjct: 387 LVFDRFSSK-DIIMWNSIISGYASHG 411



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G INEAR+ FD +  + + SW +++  YF  G  +E   LF E+ +     N  ++ G
Sbjct: 29  RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER----NVVSWNG 84

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +++    +      + V   M     +    + +A+V  Y + G V  ++ +F  MP  +
Sbjct: 85  LVSGYIKNRMIVEARNVFELMP----ERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERN 140

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
            VSWT +  G   +G  DKA + ++++       D +    ++      G VD+    F 
Sbjct: 141 EVSWTVMFGGLIDDGRIDKARKLYDMM----PVKDVVASTNMIGGLCREGRVDEARLIFD 196

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            ++E++ +T+T      ++    ++ R   A  +   MP K +   W S+L G  + G +
Sbjct: 197 EMRERNVVTWTT-----MITGYRQNNRVDVARKLFEVMPEKTE-VSWTSMLLGYTLSGRI 250

Query: 446 DLAKRAAEALFEIEPENPA 464
           +     AE  FE+ P  P 
Sbjct: 251 E----DAEEFFEVMPMKPV 265


>gi|125575136|gb|EAZ16420.1| hypothetical protein OsJ_31889 [Oryza sativa Japonica Group]
          Length = 664

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/503 (31%), Positives = 278/503 (55%), Gaps = 52/503 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S++  C    AL  GK++HS++   G K  V+I + L+ MY++CG    A+++
Sbjct: 7   PDAVTVASILPACTGLMALGIGKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGYARSV 66

Query: 84  FDEMQER-----------------------------------DVCSYNTMISGFTKGGSL 108
           F  ++E+                                   D  +YN+ I+ + + G  
Sbjct: 67  FAAIEEKNATVWNELIRSYINEERMNEAWEAFRLMKENGLQPDTITYNSFIAAYARAGQK 126

Query: 109 EQARNLFDEMPQ----RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE----------- 153
           EQA  L   M +     +  S  A+ISG   + +  +AL+ +R MQ              
Sbjct: 127 EQAYTLLSNMVEIGLKPNVVSMNALISGLHHHGRHADALEAFRYMQVSSDGEAKGWALPG 186

Query: 154 NSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           NS+  N  T++SVLS ++ ++  RLGKE+H Y  R+G  S+  V S L D+YGK G +  
Sbjct: 187 NSIQPNGTTITSVLSLLTDLRLDRLGKEVHCYAFRSGLISNIFVSSKLVDLYGKTGDVGT 246

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A ++F ++ +++VV+W +++  Y Q  + E    LF E+IKS + PN  T    L +   
Sbjct: 247 ADKVFRRISNKNVVTWNSILASYRQNRKPEIALKLFHEMIKSNLLPNLVTLQIALLSSGM 306

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFA-ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
             A + G+++HGY+ +   D Y  A ASAL+ MY KCG +E+++ VF      D+ +W +
Sbjct: 307 TMALQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDARLVFECTDEKDIATWNA 366

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +++ Y  + +P +  + F+ + +SG QPD + F+ +L+AC   G +++  +YF+S+++ +
Sbjct: 367 IMSAYLLHRIPGEVKKLFKYIEQSGIQPDPVTFIILLSACKQEGSMEEARRYFYSMEDVY 426

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           G+  T  HY C+VD++  +G   E+ ++I KM ++PD  LW+ LL  C++H NL++ ++A
Sbjct: 427 GIQPTLKHYTCMVDIMGMAGLLEESLELIQKMQLEPDGCLWSILLKACKLHSNLEIGEKA 486

Query: 452 AEALFEIEPENPATYVTMANIYA 474
           A+ALFE+EP N + Y++++NIYA
Sbjct: 487 AKALFELEPNNTSNYMSLSNIYA 509



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 123/288 (42%), Gaps = 20/288 (6%)

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           E+   +  T++S+L A + +  L +GK++H Y++R G   +  + S+L  MY +CG    
Sbjct: 3   ESESPDAVTVASILPACTGLMALGIGKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGY 62

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           AR +F  + +++   W  +I  Y  E R  E +  F  + ++G++P+  T+   + A A 
Sbjct: 63  ARSVFAAIEEKNATVWNELIRSYINEERMNEAWEAFRLMKENGLQPDTITYNSFIAAYAR 122

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
              +E    +   M  IG  P   + +AL+      G   ++ + F  M     VS    
Sbjct: 123 AGQKEQAYTLLSNMVEIGLKPNVVSMNALISGLHHHGRHADALEAFRYMQ----VSSDGE 178

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
             G+A  G              +  QP+      VL+  T   L   G +  H    + G
Sbjct: 179 AKGWALPG--------------NSIQPNGTTITSVLSLLTDLRLDRLGKE-VHCYAFRSG 223

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
           L       + +VDL  ++G    A+ V  ++  K +   W S+L   R
Sbjct: 224 LISNIFVSSKLVDLYGKTGDVGTADKVFRRISNK-NVVTWNSILASYR 270


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 257/492 (52%), Gaps = 72/492 (14%)

Query: 55  SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           SG    ++ +N ++  YAKCG I  A  +F E  +RD  S+NTMI+GF   G+ E A   
Sbjct: 28  SGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEF 87

Query: 115 FDEMPQR----DNFSWTAMIS-----GYVRYNQPIEA-----------------LDLYRM 148
              M +     D +S+ +++      GYV   Q + +                 LD+Y  
Sbjct: 88  LKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAK 147

Query: 149 MQNFENS--------VSNKFTLSSVLSAVSAI----------QCL--------------- 175
            +  E++        + N  T ++++S  + +           C+               
Sbjct: 148 CERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPL 207

Query: 176 ----------RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV---D 222
                     +L  ++H  I++ G  SD  V +A+   Y +CGSI +A ++FD  +   D
Sbjct: 208 LTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRD 267

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
            D VSW +++  + Q G  E+    F  +    +  + + F+ VL +C+D A  +LG+QV
Sbjct: 268 LDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQV 327

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H  + + G++P  F AS+L+ MYSKCG +E+++K F+  P+   ++W SLI GYAQ+G  
Sbjct: 328 HVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRG 387

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
             AL+ F L+     + DHI FV VLTAC+H GLV++G  +  S++  +G+    +HYAC
Sbjct: 388 KIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYAC 447

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           ++DLL R+GR  EA+ +I  MP +PD  +W +LLG CR  G+++LA + A  L E+EPE 
Sbjct: 448 MIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEE 507

Query: 463 PATYVTMANIYA 474
             TYV +++++ 
Sbjct: 508 HCTYVLLSSMFG 519



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 98/202 (48%), Gaps = 15/202 (7%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +S++++ C     L+ G++VH  +  SGF+P  F+++ L+ MY+KCG I DA+  FD   
Sbjct: 308 FSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP 367

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALD 144
           +    ++N++I G+ + G  + A +LF  M  R    D+ ++ A+++           + 
Sbjct: 368 KDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTA-------CSHIG 420

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCL--RLGK--EIHGYIMRTGFDSDEVVWSAL 200
           L     +F  S+ + + +   +   + +  L  R G+  E    I    F+ D +VW  L
Sbjct: 421 LVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTL 480

Query: 201 SDMYGKCGSINEARQIFDKMVD 222
                 CG I  A Q+   +++
Sbjct: 481 LGACRTCGDIELASQVASHLLE 502


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 255/457 (55%), Gaps = 38/457 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S++  C   +ALE+G++VH  L  SG +  ++  + L+DMY KCG I      
Sbjct: 549 PDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAI------ 602

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                    E AR +F  MP R   S  A+I+GY + N  +EA+
Sbjct: 603 -------------------------EAARYVFSCMPSRSVVSMNAIIAGYAQ-NDLVEAI 636

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALS 201
           DL++ MQN E    ++ T +S+L A +    L LG++IH  I + G  +D D +  S L 
Sbjct: 637 DLFQEMQN-EGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLV 695

Query: 202 DMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            MY       +A  +F +    +  + WTA+I  + Q G  EE   L+ E+ ++  RP+ 
Sbjct: 696 -MYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQ 754

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            TFA VL AC+  A+   G+ +H  +  +G D      SA+V MY+KCG++++S +VF  
Sbjct: 755 ATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEE 814

Query: 321 M-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
           M  + D++SW S+I G+A+NG  + AL+ F+ +  +  +PD + F+GVLTAC+HAG V +
Sbjct: 815 MGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSE 874

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G + F  +   + +    DH AC++DLL R G   EAE+ I K+  +P+  +WA+LLG C
Sbjct: 875 GREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGAC 934

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           RIHG+    +RAAE L E+EPEN + YV ++NIYA++
Sbjct: 935 RIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAAS 971



 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 227/439 (51%), Gaps = 39/439 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y+ ++  C +   ++ GK+VH  +   GF+   F    L+DMY+KCG++ DA+ +
Sbjct: 180 PNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKI 239

Query: 84  FDEMQERDVCSYNTMISGFTKGG-----------------------------------SL 108
           FD + + D  S+  MI+G+ + G                                    L
Sbjct: 240 FDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRL 299

Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-SNKFTLSSVLS 167
           + A +LF +MP  +  +W  MISG+V+    IEA+D ++ M  ++  V S + TL SVLS
Sbjct: 300 DDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNM--WKTGVKSTRSTLGSVLS 357

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
           A+++++ L  G  +H   ++ G +S+  V S+L +MY KC  +  A+++FD + +R++V 
Sbjct: 358 AIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVL 417

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           W AM+G Y Q G   +   LFSE+   G  P+ FT+  +L+ACA     E+G+Q+H ++ 
Sbjct: 418 WNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFII 477

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           +  ++   F  + LV MY+KCG +E +++ F  +   D VSW ++I GY Q    D+A  
Sbjct: 478 KHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFN 537

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407
            F  ++  G  PD +    +L+ C +   +++G Q  H    K GL       + ++D+ 
Sbjct: 538 MFRRMILDGIAPDEVSLASILSGCANLQALEQGEQ-VHCFLVKSGLQTCLYAGSSLIDMY 596

Query: 408 ARSGRFHEAEDVISKMPMK 426
            + G    A  V S MP +
Sbjct: 597 VKCGAIEAARYVFSCMPSR 615



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 209/399 (52%), Gaps = 35/399 (8%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  G  VH+     G    V++ + L++MYAKC                          
Sbjct: 364 ALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEK------------------------ 399

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
                  +E A+ +FD + +R+   W AM+ GY +     + + L+  M+       ++F
Sbjct: 400 -------MEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGC-GFWPDEF 451

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T +S+LSA + ++CL +G+++H +I++  F+ +  V + L DMY KCG++ EARQ F+ +
Sbjct: 452 TYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFI 511

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            +RD VSW A+I  Y QE   +E F +F  +I  GI P+  + A +L+ CA+  A E G+
Sbjct: 512 RNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGE 571

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           QVH ++ + G     +A S+L+ MY KCG +E ++ VF+ MP   +VS  ++IAGYAQN 
Sbjct: 572 QVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQND 631

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
           + + A++ F+ +   G  P  I F  +L ACT    ++ G Q  H + +K GL Y  D  
Sbjct: 632 LVE-AIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQ-IHCLIQKRGLLYDGDFL 689

Query: 401 AC-IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              ++ +   S R  +A+ + S+        LW +++ G
Sbjct: 690 GVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISG 728



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/212 (39%), Positives = 133/212 (62%)

Query: 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
           Q  R  K IH   ++ GF S   + SA+ D+Y KCG++  A + F+++  RD+++W +++
Sbjct: 95  QASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVL 154

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y ++G  E+    F  L   G+ PN FT+A VL++CA     +LGKQVH  + ++G++
Sbjct: 155 SMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFE 214

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
             SF   +L+ MYSKCG++ +++K+F+ +  PD VSWT++IAGY Q G+P++AL+ FE +
Sbjct: 215 FNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDM 274

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
            K G  PD + FV V+TAC   G +D     F
Sbjct: 275 QKLGLVPDQVAFVTVITACVGLGRLDDACDLF 306



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 198/419 (47%), Gaps = 75/419 (17%)

Query: 20  QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           +I HP       L Q  R +      K +H+     GF     + + ++D+YAKCGN+  
Sbjct: 81  KIRHPFDETPQRLAQASRTS------KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEF 134

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A   F+++++RD+ ++N+++S +++ GSLEQ    F                        
Sbjct: 135 AAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGS---------------------- 172

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                    +QN   S  N+FT + VLS+ + +  + LGK++H  +++ GF+ +     +
Sbjct: 173 ---------LQNCGVS-PNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGS 222

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY KCGS+ +AR+IFD +VD D VSWTAMI  Y Q G  EE   +F ++ K G+ P+
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPD 282

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
              F  V+ AC                  +G                  G ++++  +F 
Sbjct: 283 QVAFVTVITAC------------------VGL-----------------GRLDDACDLFV 307

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            MP  ++V+W  +I+G+ + G   +A+++F+ + K+G +        VL+A      ++ 
Sbjct: 308 QMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNY 367

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           GL   H+   K GL       + ++++ A+  +   A+ V   +  + +  LW ++LGG
Sbjct: 368 GL-LVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDER-NLVLWNAMLGG 424



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 41/337 (12%)

Query: 8   QRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF-KPGVF 62
           Q  L EA+ +  ++ +    PS   ++SL+  C     L  G+++H  ++  G    G F
Sbjct: 629 QNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDF 688

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           +   LL MY      +DA  LF E Q  +    +  +ISG T+ G  E+A  L+ EM + 
Sbjct: 689 LGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHR- 747

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                                           N+  ++ T +SVL A S +  L  G+ I
Sbjct: 748 -------------------------------NNARPDQATFASVLRACSILASLGDGRMI 776

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGR 240
           H  I   G DSDE+  SA+ DMY KCG +  + Q+F++M  + DV+SW +MI  + + G 
Sbjct: 777 HSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGY 836

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAAS 299
            E    +F E+  + IRP+  TF GVL AC+       G+++   M       P     +
Sbjct: 837 AENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCA 896

Query: 300 ALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAG 335
            ++ +  + G ++ +++  + +   P+ + W +L+  
Sbjct: 897 CMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGA 933



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 18/223 (8%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EALQ+  ++    + P  + ++S+++ C    +L +G+ +HS +   G        + +
Sbjct: 736 EEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAV 795

Query: 68  LDMYAKCGNISDAQTLFDEM-QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----D 122
           +DMYAKCG++  +  +F+EM  + DV S+N+MI GF K G  E A  +FDEM       D
Sbjct: 796 VDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPD 855

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
           + ++  +++      +  E  +++ +M +    V     L      +  +      KE  
Sbjct: 856 DVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPR---LDHCACMIDLLGRWGFLKEAE 912

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKC---GSINEARQIFDKMVD 222
            +I +  F+ + ++W+ L    G C   G     R+  +K+++
Sbjct: 913 EFIDKLNFEPNAMIWATL---LGACRIHGDDIRGRRAAEKLIE 952


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/525 (30%), Positives = 269/525 (51%), Gaps = 77/525 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++ +  C +   L+EGK VH+     G   GVF+SN L+ MYA+CG++ +A+ +FD  +
Sbjct: 117 YAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTE 176

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---------------------------- 120
           ERD  S+N+++SG+ + G+ E+   +F  M +                            
Sbjct: 177 ERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIA 236

Query: 121 -------------RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN--------- 158
                         D F  +AM+  Y +     EA+ L++ + +    V N         
Sbjct: 237 EAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRD 296

Query: 159 -----KFTLSSVLSAVSAIQC----------------------LRLGKEIHGYIMRTGFD 191
                K  +   LS  S +Q                       +  GK+IHG +++  F 
Sbjct: 297 EAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQ 356

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            D+ + SAL D+Y     + +  + F  +  +DVV+WTAMI    Q    E   ALF EL
Sbjct: 357 GDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHEL 416

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           +  G++P+ FT + V+NACA  A    G+Q+  + T+ G+D ++   ++ +HMY++ GNV
Sbjct: 417 LGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGNV 476

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           E + + F  M   D+VSW+++I+ +AQ+G   +AL++F  ++ +   P+ I F+GVLTAC
Sbjct: 477 EAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTAC 536

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           +H GLVD+GL+Y+  +K ++GL  T  H  C+VDLL R+GR  +AE  I       +  +
Sbjct: 537 SHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVV 596

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W SLLG CRIH +++  +  A+ + E++P +   YV + N+Y  A
Sbjct: 597 WQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNLYNMYLDA 641



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 188/413 (45%), Gaps = 43/413 (10%)

Query: 37  RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96
           R   +L +   VH H+  +   P +F+ N LL  Y + G                     
Sbjct: 21  RSCASLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLG--------------------- 59

Query: 97  TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
                    G   QAR L DEMP+R+  S+  +I  Y R  Q  E+L+ +          
Sbjct: 60  --------AGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVK 111

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           +++FT ++ L+A S    L+ GK +H   +  G      V ++L  MY +CG + EAR++
Sbjct: 112 ADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRV 171

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA--DHA 274
           FD   +RD VSW +++  Y + G  EE   +F+ + +  +  N+F    V+  C+  D +
Sbjct: 172 FDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGS 231

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
              + + VHG + + G D   F ASA+V MY+K G +  +  +F  +  P++V + ++IA
Sbjct: 232 VRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIA 291

Query: 335 GYAQN------GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           G  ++       +  +AL  +  L   G +P    F  V+ AC  AG ++ G Q  H   
Sbjct: 292 GLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQ-IHGQV 350

Query: 389 EKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
            KH   +  D +  + ++DL   S    +       +P K D   W +++ GC
Sbjct: 351 LKH--CFQGDDFIGSALIDLYFNSACMEDGFRCFRSVP-KQDVVTWTAMISGC 400



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 46/333 (13%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           ++EAL +  ++      P+   +SS+I+ C     +E GK++H  +    F+   FI + 
Sbjct: 305 VREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSA 364

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+Y     + D    F  + ++DV ++  MISG  +    E+A  LF E+        
Sbjct: 365 LIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELL------- 417

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                G      P                    FT+SSV++A +++  +R G+++  +  
Sbjct: 418 -----GVGLKPDP--------------------FTISSVMNACASLAVVRTGEQMQCFAT 452

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           ++GFD    + ++   MY + G++  A Q F +M   DVVSW+A+I  + Q G   +   
Sbjct: 453 KSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQ 512

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMY 305
            F+E++ + + PN  TF GVL AC+     + G + +  M    G  P     + +V + 
Sbjct: 513 FFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLL 572

Query: 306 SKCGNVENSK-----KVFNGMPRPDLVSWTSLI 333
            + G + +++      +F+  P    V W SL+
Sbjct: 573 GRAGRLADAEAFIRDSIFHDEP----VVWQSLL 601



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+  N   +++  +    +       ++++I  C QN   E    +   L   G KP  
Sbjct: 366 IDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDP 425

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ--------ERDVCSYNTMISGFTKGGSLEQARN 113
           F  + +++    C +++  +T  ++MQ        +R     N+ I  + + G++E A  
Sbjct: 426 FTISSVMN---ACASLAVVRT-GEQMQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQ 481

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
            F EM   D  SW+A+IS + ++    +AL  +  M      V N+ T   VL+A S   
Sbjct: 482 RFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVG-AKVVPNEITFLGVLTACS--- 537

Query: 174 CLRLGKEIHGYIMRTGFDSDEVV------------WSALSDMYGKCGSINEARQ-IFDKM 220
                   HG ++  G    E++             + + D+ G+ G + +A   I D +
Sbjct: 538 --------HGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSI 589

Query: 221 VDRDVVSWTAMIG 233
              + V W +++G
Sbjct: 590 FHDEPVVWQSLLG 602



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 2   IDILCNQRRLKEALQILH-QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP- 59
           +D+L    RL +A   +   I H  P ++ SL+  CR +R +E G+ V   +     +P 
Sbjct: 569 VDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIME--LQPA 626

Query: 60  --GVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
             G +++  L +MY   G +S    + D M+ER V
Sbjct: 627 SSGCYVN--LYNMYLDAGELSLGSKIRDLMKERGV 659


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/399 (38%), Positives = 240/399 (60%), Gaps = 12/399 (3%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E D    N++ S ++K GSLE A   F  +  ++  SWT +IS +    +    L  +  
Sbjct: 202 EFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVE 261

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M + E    N+FTL+S LS    +Q L +G +IH   ++ GF+S+  + +++  +Y KCG
Sbjct: 262 MLS-ECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCG 320

Query: 209 SINEARQIFDKMVDRDVVSWTAMIG---RYFQEGRRE--------EGFALFSELIKSGIR 257
            I+EA+++FD+M    +V+W AMI    R     + +        E  ++F +L +SG++
Sbjct: 321 WIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMK 380

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+ FTF+ VL+ C+   A E G+QVH    + G+       +ALV+MY+KCG++E + K 
Sbjct: 381 PDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKA 440

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F  M    L+SWTS+I GYAQNG P +AL  FE +  +G +P+ I FVGVL+AC+HAG+V
Sbjct: 441 FVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMV 500

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           D+ L YF  +K ++ +T   DHYAC++D+  R GR  EA D I +M ++P++F+W+ L+ 
Sbjct: 501 DEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIA 560

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           GCR  G L+L   AAE L  ++P++  TY  + N+Y SA
Sbjct: 561 GCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSA 599



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 217/441 (49%), Gaps = 49/441 (11%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
            +EAL  + + +    + Y  ++Q C   + + + +K+H+H+  +G     F+   L+++
Sbjct: 54  FREALSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNV 113

Query: 71  YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
           YAKCG                               ++E AR +FDE+P+R+  SWT ++
Sbjct: 114 YAKCG-------------------------------TMETARKVFDELPRRNVVSWTTLM 142

Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
           +GYV  ++P  A+ ++R M     +    +TL + LSA S +    LGK+IHGY ++   
Sbjct: 143 TGYVHDSKPELAVQVFREMLE-AGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRI 201

Query: 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
           + D  + ++L  +Y KCGS+  A + F ++ D++V+SWT +I  +   G    G   F E
Sbjct: 202 EFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVE 261

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           ++   + PN FT    L+ C    + ++G Q+H    ++G++      ++++++Y KCG 
Sbjct: 262 MLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGW 321

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD-------------KALEYFELLLKSGT 357
           +  +KK+F+ M    LV+W ++IAG+A+  M D             +AL  F  L +SG 
Sbjct: 322 IHEAKKLFDEMETISLVTWNAMIAGHAR--MMDFAKDDLAAHQCGTEALSIFLKLNRSGM 379

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD   F  VL+ C+    +++G Q  H+   K G          +V++  + G    A 
Sbjct: 380 KPDLFTFSSVLSVCSSLVALEQGEQ-VHAQTIKTGFLSDVVVGTALVNMYNKCGSIERAS 438

Query: 418 DVISKMPMKPDKFLWASLLGG 438
               +M ++     W S++ G
Sbjct: 439 KAFVEMSIRT-LISWTSMITG 458



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 168/332 (50%), Gaps = 31/332 (9%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +++L +   P+    +S +  C   ++L+ G ++HS     GF+  + I N ++ +Y KC
Sbjct: 260 VEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKC 319

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G I +A+ LFDEM+   + ++N MI+G  +     +     D++        T  +S ++
Sbjct: 320 GWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAK-----DDLAAHQ--CGTEALSIFL 372

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           + N+     DL              FT SSVLS  S++  L  G+++H   ++TGF SD 
Sbjct: 373 KLNRSGMKPDL--------------FTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDV 418

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           VV +AL +MY KCGSI  A + F +M  R ++SWT+MI  Y Q G+ ++   LF ++  +
Sbjct: 419 VVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLA 478

Query: 255 GIRPNAFTFAGVLNACA-----DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309
           G+RPN  TF GVL+AC+     D A +      + Y      D Y    + L+ M+ + G
Sbjct: 479 GVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHY----ACLIDMFVRLG 534

Query: 310 NVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
            ++ +      M   P+   W+ LIAG    G
Sbjct: 535 RLDEAFDFIKEMDLEPNEFIWSILIAGCRSQG 566



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 20/215 (9%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           ALE+G++VH+    +GF   V +   L++MY KCG+I  A   F EM  R + S+ +MI+
Sbjct: 398 ALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMIT 457

Query: 101 GFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
           G+ + G  +QA  LF++M     + +  ++  ++S         EALD ++MM+      
Sbjct: 458 GYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMK------ 511

Query: 157 SNKFTLSSVLSAVSAI--QCLRLGK--EIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN- 211
            N++ ++ V+   + +    +RLG+  E   +I     + +E +WS L       G +  
Sbjct: 512 -NEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLEL 570

Query: 212 ---EARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
               A Q+ + +  +D  ++  ++  Y   G+ +E
Sbjct: 571 GFYAAEQLLN-LKPKDTETYNLLLNMYLSAGKWKE 604


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 151/399 (37%), Positives = 230/399 (57%), Gaps = 35/399 (8%)

Query: 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171
           R +F ++   + F WTA+I GY      +E++ LY  M+  +      FT +++L A SA
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRR-QGIGPVSFTFTALLKACSA 151

Query: 172 IQCLRLGKEIHG-YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT- 229
              + LG+++H   I+  GF SD  V + L DMY KCG +    ++FD+M+DRDV+SWT 
Sbjct: 152 ALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTS 211

Query: 230 ------------------------------AMIGRYFQEGRREEGFALFSELIKSGIRPN 259
                                         AM+  Y Q  R  E   +F  +  +G++ +
Sbjct: 212 LIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTD 271

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSKCGNVENSKKV 317
             T  GV++ACA   A +    V     + G+ P S     SAL+ MY+KCG+VE++ KV
Sbjct: 272 EVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKV 331

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F  M   ++ S++S+I G+A +G+   A+E F+ +LK+  +P+ + F+GVLTAC+HAG+V
Sbjct: 332 FERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMV 391

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           ++G Q F  ++E HG+  + DHYAC+VDLL R+GR  EA +++  MPM P   +W +LLG
Sbjct: 392 EQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLG 451

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            CRIHGN D+A+ AA  LFE+EP     Y+ ++NIYASA
Sbjct: 452 ACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASA 490


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 256/459 (55%), Gaps = 33/459 (7%)

Query: 20  QISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
           Q++  SP  ++   L++ C     L+ G+ VH+ +   GF   VF+ N L+ +YAKC  +
Sbjct: 111 QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRL 170

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
             A+T+F+ +                              +P+R   SWTA++S Y +  
Sbjct: 171 GSARTVFEGL-----------------------------PLPERTIVSWTAIVSAYAQNG 201

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           +P+EAL+++  M+  +    +   L SVL+A + +Q L+ G+ IH  +++ G + +  + 
Sbjct: 202 EPMEALEIFSQMRKMDVK-PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
            +L+ MY KCG +  A+ +FDKM   +++ W AMI  Y + G   E   +F E+I   +R
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+  +    ++ACA   + E  + ++ Y+ R  Y    F +SAL+ M++KCG+VE ++ V
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLV 380

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+     D+V W+++I GY  +G   +A+  +  + + G  P+ + F+G+L AC H+G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +G  +F+ + + H +     HYAC++DLL R+G   +A +VI  MP++P   +W +LL 
Sbjct: 441 REGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            C+ H +++L + AA+ LF I+P N   YV ++N+YA+A
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAA 538



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 186/362 (51%), Gaps = 15/362 (4%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I   +  G +  AR +FD++P+   F W A+I GY R N   +AL +Y  MQ       
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQ-LARVSP 117

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + FT   +L A S +  L++G+ +H  + R GFD+D  V + L  +Y KC  +  AR +F
Sbjct: 118 DSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVF 177

Query: 218 D--KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +   + +R +VSWTA++  Y Q G   E   +FS++ K  ++P+      VLNA      
Sbjct: 178 EGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQD 237

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + G+ +H  + ++G +       +L  MY+KCG V  +K +F+ M  P+L+ W ++I+G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           YA+NG   +A++ F  ++    +PD I     ++AC   G +++    +  +       Y
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS---DY 354

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
             D +  + ++D+ A+ G    A  V  +  +  D  +W++++ G  +HG      RA E
Sbjct: 355 RDDVFISSALIDMFAKCGSVEGARLVFDRT-LDRDVVVWSAMIVGYGLHG------RARE 407

Query: 454 AL 455
           A+
Sbjct: 408 AI 409



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 146/284 (51%), Gaps = 8/284 (2%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           S+ F  S + SA    Q     K+IH  ++  G      + + L       G I  ARQ+
Sbjct: 20  SDSFYASLIDSATHKAQL----KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQV 75

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           FD +    +  W A+I  Y +    ++   ++S +  + + P++FTF  +L AC+  +  
Sbjct: 76  FDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHL 135

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD--LVSWTSLIA 334
           ++G+ VH  + R+G+D   F  + L+ +Y+KC  + +++ VF G+P P+  +VSWT++++
Sbjct: 136 QMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVS 195

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            YAQNG P +ALE F  + K   +PD +  V VL A T    + +G +  H+   K GL 
Sbjct: 196 AYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG-RSIHASVVKMGLE 254

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              D    +  + A+ G+   A+ +  KM   P+  LW +++ G
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 244/458 (53%), Gaps = 36/458 (7%)

Query: 24  PSP---SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           PSP   S Y+++++ C  +RA+  G+++H+ L  SG      ++  L+D+YA CG++S  
Sbjct: 63  PSPYNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVS-- 120

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQP 139
                                         AR +FDEMP + N F W  +I  Y R    
Sbjct: 121 -----------------------------LARRVFDEMPNQGNVFLWNVLIRAYARDGPC 151

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             A++LYR M  + +   + FT   VL A +A+  L  G+E+H  +MRT + +D  V + 
Sbjct: 152 EAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTG 211

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L DMY KCG ++EA  +F+    RD   W +MI    Q GR  E   L   +   GI P 
Sbjct: 212 LIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPT 271

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T    ++A A  +A   G+++HGY  R G+       ++L+ MY+K G V  +  +F 
Sbjct: 272 IATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFE 331

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSGTQPDHIVFVGVLTACTHAGLVD 378
            +   +L+SW ++I G+  +G  D A E F  +  ++   PDHI FVGVL+AC H G+V 
Sbjct: 332 QLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQ 391

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +  + F  +   + +  T  HY C+VD+L  SGRF EA DVI  M +KPD  +W +LL G
Sbjct: 392 EAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNG 451

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C+IH N++LA+ A + L E+EPE+   YV ++NIYA +
Sbjct: 452 CKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAES 489



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 29/275 (10%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  G+++H +    GF     +   LLDMYAK G +  A  LF+++  R++ S+N MI G
Sbjct: 288 LPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICG 347

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           F   G  + A  LF  M      S   ++  ++ +   + A +   M+Q  +       T
Sbjct: 348 FGMHGHADHAFELFSRMR-----SEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVT 402

Query: 162 LSSVLSAVSAIQCL--RLG-----KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
           + S+   V    CL   LG     KE    I       D  +W AL +      ++  A 
Sbjct: 403 VYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAE 462

Query: 215 QIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP------------- 258
               K+++    D  ++  +   Y + G+ EE   +   +   G++              
Sbjct: 463 LALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKF 522

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293
           + F      +  +D   EEL +++ G +++ GY P
Sbjct: 523 HGFLVGDASHPRSDDIYEEL-ERLEGLISQTGYVP 556


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/548 (30%), Positives = 287/548 (52%), Gaps = 82/548 (14%)

Query: 5   LCNQRRLKEALQILHQISHPS-----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
           LC   +L +A++IL+  +H S      ++Y+SL+Q CR+  +   G + H+H+  SG + 
Sbjct: 35  LCKLGQLTDAIRILNS-THSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLET 93

Query: 60  GVFISNCLLDMYAKCG-NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
              + N LL +Y K G ++ + + +FD M  +D  S+ +M+SG+       +A  +F EM
Sbjct: 94  DRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEM 153

Query: 119 ------PQR----------------------------DNFSWTAMISGYVRY-----NQP 139
                 P +                              F W  +IS  + Y      +P
Sbjct: 154 VSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEP 213

Query: 140 I-------------------------------EALDLYRMMQNFENSVSNKFTLSSVLSA 168
           +                               EAL L+  M   +  V +  T  +VL+A
Sbjct: 214 VDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTA 273

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
              ++ L+ GKEIHG ++  G  S+ VV S+L DMYGK GS+ EARQ+F+ M  +++VSW
Sbjct: 274 CGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSW 333

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
           +A++G Y Q G  E+   +F E+ +  +    + F  VL ACA  AA  LGK++HG   R
Sbjct: 334 SALLGGYCQNGEHEKAIEMFREMEEKDL----YCFGTVLKACAGLAAVRLGKEIHGQYVR 389

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
            G        SAL+ +Y K G ++ + +V++ M   ++++W ++++  AQNG  ++A+ +
Sbjct: 390 RGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSF 449

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  ++K G +PD+I F+ VLTAC H GLV++G  YF  + + +G+    +HY+C++DLL 
Sbjct: 450 FNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLG 509

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL-DLAKRAAEALFEIEPENPATYV 467
           R+G F EAE+++ +   + D  LW  LLG C  + +   +A+R A+ + E+EP+   +YV
Sbjct: 510 RAGLFEEAENLLDRAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYV 569

Query: 468 TMANIYAS 475
            ++N+Y +
Sbjct: 570 LLSNMYKA 577



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/262 (18%), Positives = 111/262 (42%), Gaps = 17/262 (6%)

Query: 6   CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           C     ++A+++  ++       + ++++ C    A+  GK++H      G    V + +
Sbjct: 341 CQNGEHEKAIEMFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVES 400

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---- 121
            L+D+Y K G I  A  ++ +M  R++ ++N M+S   + G  E+A + F++M ++    
Sbjct: 401 ALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKP 460

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           D  S+ A+++         E  + + +M     S   K         +  +    L +E 
Sbjct: 461 DYISFIAVLTACGHTGLVEEGRNYFALMA---KSYGIKPGTEHYSCMIDLLGRAGLFEEA 517

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-------VSWTAMIGR 234
              + R    +D  +W  L    G C +  +A  I +++  R +       +S+  +   
Sbjct: 518 ENLLDRAECRNDASLWGVL---LGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNM 574

Query: 235 YFQEGRREEGFALFSELIKSGI 256
           Y   GR  +   +   +++ G+
Sbjct: 575 YKAIGRHGDALKIRKLMVRRGV 596


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 250/491 (50%), Gaps = 63/491 (12%)

Query: 15  LQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC 74
           +Q L     P+   +  L++     + ++EG++VH+ +  +GF    F+S  LL  Y  C
Sbjct: 80  MQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVAC 139

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
           G +                                + R +FDEM Q     WT +I  YV
Sbjct: 140 GLVG-------------------------------KGRQVFDEMRQPGLVLWTLIIRAYV 168

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
               P +AL+L+R M+       +   +S+V+SA   +  L + K +H +I ++G + D 
Sbjct: 169 CVTFPEKALELFRTMREV-GLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDA 227

Query: 195 VVWSALSDMYGKCGSINEA-------------------------------RQIFDKMVDR 223
            V S L   YG+CGS++ A                               +Q+F  M DR
Sbjct: 228 FVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDR 287

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DVVSW +MIG + + G+ +E    F E+  SG+ PNA T    L+ACA H A + G  +H
Sbjct: 288 DVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIH 347

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y+ +   +      S+L+ MYSKCG+++ + ++F    R DL +WTS++ G A +G  +
Sbjct: 348 AYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGE 407

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           KAL YF  + ++  QPD +  VGVL+AC HAGL+D+G  YF S+++  GL    +HY  +
Sbjct: 408 KALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXM 467

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
           VDLL R G   EA D+I  MPM+ ++ +W + L  CR+H N++L + AA  L  + P +P
Sbjct: 468 VDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDP 527

Query: 464 ATYVTMANIYA 474
              V ++N+YA
Sbjct: 528 WARVMLSNMYA 538



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 177/388 (45%), Gaps = 44/388 (11%)

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-SNKFTLSSVLSAVSAIQCLRLGKEIH 182
           F W  MI   V          L   MQ     +  N  T   +L A+ + Q ++ G+E+H
Sbjct: 55  FVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVH 114

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
             ++RTGF   E V  AL   Y  CG + + RQ+FD+M    +V WT +I  Y      E
Sbjct: 115 ASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPE 174

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   LF  + + G+ P+    + V++AC       + K +H ++ + G +  +F +S L+
Sbjct: 175 KALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLI 234

Query: 303 HMYSKCG-------------------------------NVENSKKVFNGMPRPDLVSWTS 331
             Y +CG                               N+E  K++F  MP  D+VSW S
Sbjct: 235 STYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I G+A+ G   +AL +F  +  SG  P+ +  +  L+AC   G +D G  + H+  +K+
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG-AWIHAYVDKN 353

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA--- 448
            +       + ++D+ ++ G   +A  +  +   + D F W S++ G  +HG  + A   
Sbjct: 354 DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAMHGRGEKALHY 412

Query: 449 -KRAAEALFEIEPENPATYVTMANIYAS 475
             +  EA  +++P++    VTM  + ++
Sbjct: 413 FSKMKEA--QVQPDD----VTMVGVLSA 434


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 238/432 (55%), Gaps = 32/432 (7%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK +H +   +GF   V IS  L DMY+KCG                             
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCG----------------------------- 297

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
             S+E AR +FD M Q+   SW +M+ GYV+  +P +A+ ++  M   E       T+  
Sbjct: 298 --SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE-EGIDPTGVTIME 354

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
            L A + +  L  GK +H ++ +    SD  V ++L  MY KC  ++ A  IF+ +  R 
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284
            VSW AMI  Y Q GR  E    FSE+   G++P++FT   V+ A A+ +     K +HG
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344
            + R   D   F  +ALV MYSKCG +  ++K+F+ +    +++W ++I GY  +G+   
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           AL+ F+ + K   +P+ I ++ V++AC+H+GLVD+GL++F S+K+ +GL  + DHY  +V
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMV 594

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464
           DLL R+GR  EA D I  MP+ P   ++ +  G C+IH N+++ ++AA+ LFE+ P+   
Sbjct: 595 DLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGG 654

Query: 465 TYVTMANIYASA 476
            +V +ANIYAS 
Sbjct: 655 YHVLLANIYAST 666



 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 222/454 (48%), Gaps = 51/454 (11%)

Query: 26  PSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P +Y  + L++ C  N  L+ GK++H  L ++ F   VF    +++MYAKC  I DA   
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAY-- 202

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         +FD MP+RD  SW  +I+G+ +     +AL
Sbjct: 203 -----------------------------KMFDRMPERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L   MQ+ E    +  TL +VL A + +  L +GK IHGY +R GF     + +AL+DM
Sbjct: 234 ELVLRMQD-EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+  AR IFD M  + VVSW +M+  Y Q G  E+  A+F ++++ GI P   T 
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L+ACAD    E GK VH ++ ++         ++L+ MYSKC  V+ +  +FN +  
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
              VSW ++I GYAQNG   +AL  F  +   G +PD    V V+ A      V +  ++
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS-VTRHAKW 471

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL--WASLLGGCRI 441
            H +  +  L         +VD+ ++ G  H A  +     M  D+ +  W +++ G   
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD---MISDRHVITWNAMIDGYGT 528

Query: 442 HGNLDLAKRAAEALFE------IEPENPATYVTM 469
           HG      RAA  LF+      +EP N  TY+++
Sbjct: 529 HG----LGRAALDLFDKMKKGAVEP-NDITYLSV 557



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 215/437 (49%), Gaps = 47/437 (10%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H   HP+    + L++ C   + L +   +   +K+  +   +F +  L+ +++K G+I+
Sbjct: 46  HVYKHPA----AVLLELCTSMKELHQ--IIPLVIKNGLYNEHLFQTK-LVSLFSKYGSIN 98

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           +A  +F+ + ++    Y+TM+ G+ K  SLE A      M                RY+ 
Sbjct: 99  EAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM----------------RYD- 141

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
                D+  ++ NF          + +L        L+ GKEIHG ++   F ++    +
Sbjct: 142 -----DVKPVVYNF----------TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMT 186

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
            + +MY KC  I++A ++FD+M +RD+VSW  +I  + Q G  ++   L   +   G RP
Sbjct: 187 GVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRP 246

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           ++ T   VL A AD     +GK +HGY  R G+      ++AL  MYSKCG+VE ++ +F
Sbjct: 247 DSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIF 306

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           +GM +  +VSW S++ GY QNG P+KA+  FE +L+ G  P  +  +  L AC   G ++
Sbjct: 307 DGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLE 366

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G ++ H   ++  L         ++ + ++  R   A D+ + +  +     W +++ G
Sbjct: 367 RG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT-HVSWNAMILG 424

Query: 439 CRIHGNLDLAKRAAEAL 455
              +G      R +EAL
Sbjct: 425 YAQNG------RVSEAL 435



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 6/301 (1%)

Query: 179 KEIHGYI---MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           KE+H  I   ++ G  ++ +  + L  ++ K GSINEA ++F+ + D+    +  M+  Y
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            +    E   A    +    ++P  + F  +L  C D+A  + GK++HG +    +    
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           FA + +V+MY+KC  ++++ K+F+ MP  DLVSW ++IAG++QNG   KALE    +   
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDE 242

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD I  V VL A    GL+  G +  H    + G     +    + D+ ++ G    
Sbjct: 243 GQRPDSITLVTVLPAAADVGLLMVG-KSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           A  +   M  K     W S++ G   +G  + A    E + E E  +P     M  ++A 
Sbjct: 302 ARLIFDGMDQKT-VVSWNSMMDGYVQNGEPEKAIAVFEKMLE-EGIDPTGVTIMEALHAC 359

Query: 476 A 476
           A
Sbjct: 360 A 360



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 39/181 (21%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP--------- 59
           +R+  A  I + ++  +   ++++I    QN  + E     S +KS G KP         
Sbjct: 398 KRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVI 457

Query: 60  --------------------------GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVC 93
                                      +F++  L+DMY+KCG I  A+ LFD + +R V 
Sbjct: 458 PALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVI 517

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           ++N MI G+   G    A +LFD+M     + ++ ++ ++IS         E L  ++ M
Sbjct: 518 TWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSM 577

Query: 150 Q 150
           +
Sbjct: 578 K 578


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 140/382 (36%), Positives = 225/382 (58%), Gaps = 2/382 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N  ++ + K GSL  A  +F  +  +   SW A+I GY + + P  +LD Y  M++    
Sbjct: 432 NAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKS-SGL 490

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           + + FT+ S+LSA S I+ L+LGKE+HG I+R   + D  V+ +L  +Y  CG ++ A  
Sbjct: 491 LPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHV 550

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD M D+ +VSW  M+  Y Q G  E   +LF +++  G++P   +   V  AC+   +
Sbjct: 551 LFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPS 610

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LG++ HGY  +   +  +F A +++ MY+K G+V  S KVFNG+    + SW +++ G
Sbjct: 611 LRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMG 670

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  +G   +A++ FE + ++G  PD + F+GVLTAC H+GLV +GL Y   +K   G+  
Sbjct: 671 YGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNP 730

Query: 396 TADHYACIVDLLARSGRFHEAEDVIS-KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
           T  HYAC++D+L R+G+  EA  + + +M  +P   +W  LL  CRIH NL++ ++ A  
Sbjct: 731 TLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAK 790

Query: 455 LFEIEPENPATYVTMANIYASA 476
           LF  EPE P  YV ++N+YA +
Sbjct: 791 LFVSEPEKPENYVLLSNLYAGS 812



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 212/443 (47%), Gaps = 53/443 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +  ++++  C ++R +  GK VH           V ++N L+DMY+KCG I+DAQ +
Sbjct: 287 PDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVI 346

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F     ++V S+NTM+ GF+  G + +  +L  +M             G +R +   E  
Sbjct: 347 FKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAG---------GGDLRAD---EVT 394

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF-DSDEVVWSALSD 202
            L  +   FE SV                      KE+H Y ++  F  ++E+V +A   
Sbjct: 395 ILNAVPVCFEESVLPNL------------------KELHCYSLKQEFVHNNELVANAFVA 436

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
            Y KCGS++ A ++F  +  + V SW A+IG Y Q          + ++  SG+ P+ FT
Sbjct: 437 SYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFT 496

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L+AC+   + +LGK+VHG + R   +  SF   +L+ +Y  CG +  +  +F+ M 
Sbjct: 497 VCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAME 556

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
              LVSW +++ GY QNG P++AL  F  ++  G QP  I  + V  AC+    +  G  
Sbjct: 557 DKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG-- 614

Query: 383 YFHSIKEKHG-----LTYTADHYAC-IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                +E HG     L       AC ++D+ A++G   E+  V + +  +     W +++
Sbjct: 615 -----REAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVAS-WNAMV 668

Query: 437 GGCRIHGNLDLAKRAAEA--LFE 457
            G  IHG      RA EA  LFE
Sbjct: 669 MGYGIHG------RAKEAIKLFE 685



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 196/421 (46%), Gaps = 39/421 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +++ C     ++ G  VH  +  +     VF+SN L+  Y   G++SDA  +
Sbjct: 182 PDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRV 241

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEA 142
           F  M ER++ S+N+MI  F+  G  E+   L  +M ++D+  ++T  ++           
Sbjct: 242 FKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVA----------- 290

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                             TL++VL   +  + + +GK +HG  M+   D + VV +AL D
Sbjct: 291 ------------------TLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMD 332

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNA 260
           MY KCG IN+A+ IF    +++VVSW  M+G +   G   + F L  +++  G  +R + 
Sbjct: 333 MYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADE 392

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGY-DPYSFAASALVHMYSKCGNVENSKKVFN 319
            T    +  C + +     K++H Y  +  +       A+A V  Y+KCG++  + +VF 
Sbjct: 393 VTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFC 452

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            +    + SW +LI GY+Q+  P  +L+ +  +  SG  PD      +L+AC+    +  
Sbjct: 453 SIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKL 512

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL--WASLLG 437
           G +  H +  ++ L   +  Y  ++ L    G    A  +   M    DK L  W +++ 
Sbjct: 513 G-KEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAM---EDKTLVSWNTMVN 568

Query: 438 G 438
           G
Sbjct: 569 G 569



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 9/348 (2%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I+ ++  GS + +R++FD + +++ F W A+IS Y R       L+++  M      + 
Sbjct: 123 VITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLP 182

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + FT   V+ A + +  +++G  +HG +++T    D  V +AL   YG  GS+++A ++F
Sbjct: 183 DNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVF 242

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPNAFTFAGVLNACADH 273
             M +R++VSW +MI  +   G  EE F L  ++++        P+  T A VL  CA  
Sbjct: 243 KIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARD 302

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               +GK VHG   ++  D      +AL+ MYSKCG + +++ +F      ++VSW +++
Sbjct: 303 REIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMV 362

Query: 334 AGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
            G++  G   K  +    +L  G   + D +  +  +  C    ++   L+  H    K 
Sbjct: 363 GGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVL-PNLKELHCYSLKQ 421

Query: 392 GLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              +  +  A   V   A+ G    A  V   +  K     W +L+GG
Sbjct: 422 EFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNS-WNALIGG 468



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 143/286 (50%), Gaps = 12/286 (4%)

Query: 175 LRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
           ++LG++IH  +  +    +D+V+ + +  MY  CGS +++R +FD +  +++  W A+I 
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 234 RYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
            Y +         +F ++I +SG+ P+ FTF  V+ ACA  +  ++G  VHG + +    
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLV 216

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              F ++ALV  Y   G+V ++ +VF  MP  +LVSW S+I  ++ NG+ ++       +
Sbjct: 217 EDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQM 276

Query: 353 LKSGTQ----PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           ++   +    PD      VL  C     +  G +  H +  K  L         ++D+ +
Sbjct: 277 MEKDDEIAFTPDVATLATVLPVCARDREIGVG-KGVHGLAMKLSLDKEVVVNNALMDMYS 335

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCR----IHGNLDLAKR 450
           + G  ++A+ VI K+    +   W +++GG      IH   DL ++
Sbjct: 336 KCGCINDAQ-VIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQ 380



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 150/381 (39%), Gaps = 75/381 (19%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           + AL +  Q+      P      S+   C    +L  G++ H +      +   FI+  +
Sbjct: 577 ERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSV 636

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM------PQR 121
           +DMYAK G++ ++  +F+ ++ER V S+N M+ G+   G  ++A  LF+EM      P  
Sbjct: 637 IDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDE 696

Query: 122 DNF----------------------------------SWTAMISGYVRYNQPIEALDLYR 147
             F                                   +  +I   VR  +  EAL +  
Sbjct: 697 LTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIAT 756

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
              + E  V      + +LS+    + L +G++I   +  +  +  E  +  LS++Y   
Sbjct: 757 EEMSEEPGVG---IWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPE-NYVLLSNLYAGS 812

Query: 208 GSINEARQIFDKMVDRDV-----VSWTAMIGRYFQEGRRE---EGF--------ALFSEL 251
           G  +E R++  +M +  +      SW  + G+ F     E   +GF         L  E+
Sbjct: 813 GKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREI 872

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSK-- 307
            K G RP+  +         D + EE  +Q+ G+  +  I Y     +    + +Y    
Sbjct: 873 GKMGYRPDTSSVQ------HDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLR 926

Query: 308 -CGNVENSKKVFNGMPRPDLV 327
            C +  N+ K+ + +   ++V
Sbjct: 927 ICVDCHNAAKLISKVMEREIV 947


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 239/451 (52%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+      +++ C +   +  G K+HS L  +G+   VF+   LL +Y KC N  DA   
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL-- 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         +FD++P ++  SWTA+I+GY+      EA+
Sbjct: 170 -----------------------------KVFDDIPDKNVVSWTAIITGYISSGHFREAI 200

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ +        + F+L  VL+A + +     G+ I  YI  +G   +  V ++L DM
Sbjct: 201 GAFKKLLEM-GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDM 259

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG++  A  IF  M ++D+VSW+ MI  Y   G  ++   LF ++    ++P+ +T 
Sbjct: 260 YVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTM 319

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            GVL+ACA   A +LG      M R  +       +AL+ MYSKCG+V  + ++F  M R
Sbjct: 320 VGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKR 379

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D V W +++ G + NG        F L+ K G +PD   F+G+L  CTH G V++G Q+
Sbjct: 380 KDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQF 439

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+++K    LT + +HY C+VDLL R+G  +EA  +I+ MPMKP+  +W +LLGGC++H 
Sbjct: 440 FNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHK 499

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +  LA++  + L E+EP N   YV ++NIY+
Sbjct: 500 DTHLAEQVLKKLIELEPWNSGNYVQLSNIYS 530



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K IH  ++R   D D  + + +       GS N ++ +F ++ + ++  W  MI     +
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              ++   L+  +   G  PN FT   VL ACA      LG ++H  + + GYD   F  
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++L+ +Y KC N +++ KVF+ +P  ++VSWT++I GY  +G   +A+  F+ LL+ G +
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD    V VL AC   G    G ++        G+         ++D+  + G    A  
Sbjct: 213 PDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANL 271

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYASA 476
           + S MP K D   W++++ G   +G   L ++A +  F+++ EN  P  Y  +  + A A
Sbjct: 272 IFSAMPEK-DIVSWSTMIQGYAFNG---LPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 241/452 (53%), Gaps = 32/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS    +++I  C     L +G+ +H  +   G     FIS  LLDMY KCG        
Sbjct: 264 PSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGE------- 316

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   L+ AR +FDE+   D   WT MI GY +   P++AL
Sbjct: 317 ------------------------LDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDAL 352

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L+ + + F N   N  T ++VLSA + ++ L LGK IHG  ++ G     VV +AL DM
Sbjct: 353 RLF-LDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDM 411

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC +++EA +IF ++ ++DVV+W +MI  Y +    ++   LF ++   G  P+A + 
Sbjct: 412 YAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISV 471

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
              L+A        +GK +HGY  +  +    +  +AL+++Y+KCG++ ++++VF+ M  
Sbjct: 472 VNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMND 531

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            + V+W ++I GY   G    ++  F  +LK G  P+ I F  +L+ C+H+G+V  G +Y
Sbjct: 532 RNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRY 591

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F S+ +   +T +  HYAC+VD+LAR+G   +A + I  MPM+ D  +W + L GC +H 
Sbjct: 592 FDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHS 651

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            L  A+ A + +  + PE P  YV ++N+Y S
Sbjct: 652 RLQFAEEAIKRMMVLHPERPDLYVLISNLYTS 683



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 216/447 (48%), Gaps = 42/447 (9%)

Query: 5   LCNQRRLKEALQILHQISHPSPS-------IYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           L    R  +A+ + H +    P        + S  ++ C ++     G+ +H      G 
Sbjct: 138 LVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVGG 197

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
             G F+ N L+DMYAK  ++  A+ +F+ + +R+V S+ +MISG  + G       LF++
Sbjct: 198 ADG-FVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNK 256

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M Q                                +N   +++T+++V++A SA+  L  
Sbjct: 257 MRQ--------------------------------DNVPPSEYTIATVITACSALFGLHQ 284

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G+ +HG +++ G  S+  + +AL DMY KCG ++ AR +FD++   D+V WT MI  Y Q
Sbjct: 285 GRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQ 344

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G   +   LF +   + I PN+ T A VL+A A      LGK +HG   ++G   Y+  
Sbjct: 345 NGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVV 404

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV MY+KC  V  + ++F  +   D+V+W S+I+GYA+N M D AL  F+ +   G+
Sbjct: 405 GNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGS 464

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD I  V  L+A    G +  G +  H    KH           +++L  + G    A 
Sbjct: 465 SPDAISVVNALSASVCLGDLLIG-KSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSAR 523

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGN 444
            V  +M  + +   W +++GG  + G+
Sbjct: 524 RVFDEMNDR-NSVTWCAMIGGYGMQGD 549



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 7/344 (2%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN--S 155
           ++S +   G L  AR +FD  P+ D +S+ AM+   V+  +  +A+ L+  M+       
Sbjct: 103 LLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPE 162

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             + F LS  L A         G+ +H   ++ G  +D  V ++L DMY K   +  AR+
Sbjct: 163 AQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARK 221

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+++ DR+VVSWT+MI    Q G   +G  LF+++ +  + P+ +T A V+ AC+    
Sbjct: 222 VFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFG 281

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              G+ +HG + + G    SF ++AL+ MY KCG +++++ VF+ +   DLV WT++I G
Sbjct: 282 LHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVG 341

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLT 394
           Y QNG P  AL  F     +   P+ +    VL+A   A L D  L +  H +  K GL 
Sbjct: 342 YTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSA--SAQLRDLSLGKSIHGLAVKLGLV 399

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                   +VD+ A+     EA+ +  ++  K D   W S++ G
Sbjct: 400 EYNVVGNALVDMYAKCQAVSEADRIFGRISNK-DVVAWNSMISG 442



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
           A + L+  Y+  G++ +++ VF+G PRPD  S+ +++    Q      A+     + +  
Sbjct: 99  ARTKLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRR 158

Query: 357 TQP---DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSG 411
             P   D  V    L AC  +     G +  H    K G    AD +    +VD+ A++ 
Sbjct: 159 PCPEAQDDFVLSLALKACIRSAEYSYG-RSLHCDAIKVG---GADGFVMNSLVDMYAKAE 214

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               A  V  ++P + +   W S++ GC  +G
Sbjct: 215 DLECARKVFERIPDR-NVVSWTSMISGCVQNG 245


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 260/484 (53%), Gaps = 63/484 (13%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    +  +++ C +  A +EG+++HSH+   GF   +F+SN L+ +YA CG++      
Sbjct: 408 PDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDL------ 461

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                   VC                 AR++FDEM  +D  SW ++I GY + N+  E L
Sbjct: 462 --------VC-----------------ARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVL 496

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAV------SAIQCL-------------RLGKEIHGY 184
            L+ +MQ  E   ++K T+  V+SA       S   C+              LG  +  Y
Sbjct: 497 ALFELMQA-EEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDY 555

Query: 185 IMRTG-FDSDEVVWSALSD-----------MYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
             R G   S E V+S + D            Y K G++  A++IFD++ ++D++SW++MI
Sbjct: 556 YCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMI 615

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y Q     +   LF ++ ++ ++P+A   A VL+ACA   A +LGK +H Y+ R    
Sbjct: 616 CAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIK 675

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
             +   ++L+ M++KCG ++ + +VF  M   D +SW S+I G A NG  D+AL  F  +
Sbjct: 676 TDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSM 735

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           L  G +P+ + F+GVL AC +  LV +GL +F  +K  H L     HY C+V +L+R+G+
Sbjct: 736 LTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQ 795

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
             +A++ I++MP+ PD  +W  LLG C+ HGN+ +A+ A + L E++P N   Y+ ++NI
Sbjct: 796 LEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNI 855

Query: 473 YASA 476
           YASA
Sbjct: 856 YASA 859



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 170/279 (60%), Gaps = 1/279 (0%)

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           V W+ +   +   G I  AR +FD+M  R+VVSWT +I  Y +     E  ALF  ++  
Sbjct: 7   VSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAG 66

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           GI P+  T   V+ A ++     +G+ +HGY  + G    +   ++L+ +Y+K G+V+NS
Sbjct: 67  GISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNS 126

Query: 315 KKVFNGM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
            KVF+ M  R +LVSWTS+I+G+A +G+  +ALE F  + ++G +P+ I F+ V+ AC+H
Sbjct: 127 LKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSH 186

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            GLV++GL +F S+  ++ +     H+ CI+D+L R+GR  EAE +I  +P++ +  +W 
Sbjct: 187 GGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWR 246

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
            LLG C  +G +++ KRA + + ++E E+   +  ++N+
Sbjct: 247 ILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNV 285



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 150/267 (56%), Gaps = 7/267 (2%)

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M  ++V S+N +I+GF   G +E AR LFD+MP R+  SWT +I GY R     EA+ L+
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           R M     S S + T+ +V+ A+S +  + +G+ +HGY ++ G  SD  V ++L D+Y K
Sbjct: 61  RHMMAGGISPS-EITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAK 119

Query: 207 CGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
            GS+  + ++FD+M+D R++VSWT++I  +   G   E   LF+E+ ++GIRPN  TF  
Sbjct: 120 IGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLS 179

Query: 266 VLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-R 323
           V+NAC+     E G      M      DP       ++ M  + G +  ++++  G+P  
Sbjct: 180 VINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVE 239

Query: 324 PDLVSWTSLI---AGYAQNGMPDKALE 347
            +++ W  L+   + Y +  M  +A++
Sbjct: 240 VNVIVWRILLGCCSKYGEVEMGKRAIK 266



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/480 (22%), Positives = 224/480 (46%), Gaps = 31/480 (6%)

Query: 13  EALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKV-HSHLKSSGFKPGVFISNCL 67
           EAL++  ++      P+   + S+I  C     +E+G     S +      P +    C+
Sbjct: 157 EALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 216

Query: 68  LDMYAKCGNISDAQTLFDEMQ-ERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNF 124
           +DM  + G + +A+ + + +  E +V  +  ++   +K G +E  +     +   +R++ 
Sbjct: 217 IDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESG 276

Query: 125 SWTAMISGYV----RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
              A++S  +    R++   +A  L       E  +     L+ V++   +   +   K+
Sbjct: 277 GDFAVLSNVLNELGRFSDAEQARKLLD-----ERKIVKVPGLALVVT--RSFVMMEAVKK 329

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYG-KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           +H +++ +G  + +   S +   Y  +   +  A ++F+++       W  ++    Q  
Sbjct: 330 LHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSD 389

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
             ++    + +  + G++P+  TF  VL ACA   A + G+Q+H ++ ++G+    F ++
Sbjct: 390 APKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSN 449

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +L+H+Y+ CG++  ++ +F+ M   D+VSW SLI GY+Q     + L  FEL+     Q 
Sbjct: 450 SLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQA 509

Query: 360 DHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
           D +  V V++ACTH G   + D  ++Y     E++ +         ++D   R G+   A
Sbjct: 510 DKVTMVKVISACTHLGDWSMADCMVRYI----ERNHIEVDVYLGNTLIDYYCRIGQLQSA 565

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           E V S+M  K    L A +    +  GNL  AK+  +   +I  ++  ++ +M   Y+ A
Sbjct: 566 EKVFSQMKDKNTVTLNAMIHAYAK-GGNLVSAKKIFD---QIPNKDLISWSSMICAYSQA 621



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 188/468 (40%), Gaps = 75/468 (16%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-RDVCSYNTMISGFT 103
           G+ +H +    G      + N L+D+YAK G++ ++  +FDEM + R++ S+ ++ISGF 
Sbjct: 91  GEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFA 150

Query: 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163
             G   +A  LF EM +             +R                      N+ T  
Sbjct: 151 MHGLSVEALELFAEMRR-----------AGIR---------------------PNRITFL 178

Query: 164 SVLSAVSAIQCLRLGKE-IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-V 221
           SV++A S    +  G       +     D +   +  + DM G+ G + EA QI + + V
Sbjct: 179 SVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPV 238

Query: 222 DRDVVSWTAMIG---------------RYFQEGRREEG--FALFSELIKSGIR------- 257
           + +V+ W  ++G               +   +  RE G  FA+ S ++    R       
Sbjct: 239 EVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQA 298

Query: 258 ------PNAFTFAGV-LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS-KCG 309
                        G+ L         E  K++H ++   G     +A S ++  Y+ +  
Sbjct: 299 RKLLDERKIVKVPGLALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQS 358

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           ++  + KVF  +  P    W +L+ G AQ+  P  A+ +++   + G +PD++ F  VL 
Sbjct: 359 DLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLK 418

Query: 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429
           AC       +G Q  HS   K G          ++ L A  G    A  +  +M +K D 
Sbjct: 419 ACAKTYAPKEGEQ-MHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK-DV 476

Query: 430 FLWASLLGGCRIHGNLDLAKRAAEALFEI--EPENPATYVTMANIYAS 475
             W SL+GG           +   ALFE+    E  A  VTM  + ++
Sbjct: 477 VSWNSLIGGYSQRNRF----KEVLALFELMQAEEVQADKVTMVKVISA 520


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 262/484 (54%), Gaps = 63/484 (13%)

Query: 24   PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
            P    +  +++ C +  A +EG+++H+H+   GF   +F+SN L+ +YA CG        
Sbjct: 938  PDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACG-------- 989

Query: 84   FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                   +L  AR++F+EM  +D  SW ++I GY ++N+  E L
Sbjct: 990  -----------------------ALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVL 1026

Query: 144  DLYRMMQNFENSVSNKFTLSSVLSAVSAI------QCL-------------RLGKEIHGY 184
             L+++MQ  E   ++K T+  V+SA + +       C+              LG  +  Y
Sbjct: 1027 TLFKLMQA-EEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDY 1085

Query: 185  IMRTG-FDSDEVVWSALSD-----------MYGKCGSINEARQIFDKMVDRDVVSWTAMI 232
              R G   S E V+S + D            Y K G++  A++IFD++ ++D++SW++MI
Sbjct: 1086 YCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMI 1145

Query: 233  GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
              Y Q     +   LF ++ ++ ++P+A   A VL+ACA   A +LGK +H Y+ R    
Sbjct: 1146 CAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIK 1205

Query: 293  PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              +   ++L+ M++KCG V+ + +VF  M   D +SW S+I G A NG  D+AL+ F  +
Sbjct: 1206 ADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSM 1265

Query: 353  LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
            L  G +P+ + F+GVL AC +  LV++GL +F  +K  H L     HY C+VD+L+R+G+
Sbjct: 1266 LTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQ 1325

Query: 413  FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
              +A   IS+MP+ PD  +W  LLG CR HGN+ +A+ A + L E++P N A  + ++NI
Sbjct: 1326 LEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNI 1385

Query: 473  YASA 476
            YASA
Sbjct: 1386 YASA 1389



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 211/394 (53%), Gaps = 38/394 (9%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           A  +FD+ P      W A +  Y     P+EAL L++  +  ++   + F  + VL A +
Sbjct: 437 ALKVFDQSPA----PWRAFLKAYSHGPFPLEALHLFKHAR--QHLADDTFVFTFVLKACA 490

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY--GKC--------------------- 207
            +   R G ++H  +++ GF+    V +AL ++Y   +C                     
Sbjct: 491 GLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNV 550

Query: 208 --------GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
                   G +  AR +FD+M  R+VVSWT +I  Y +     E   L   ++  GI P+
Sbjct: 551 MITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPS 610

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T   V+ A ++     +G+ ++GY  + G    +   ++L+ +Y+K G+V+NS KVF+
Sbjct: 611 EITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFD 670

Query: 320 GM-PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
            M  R +LVSWTS+I+G+A +G+  +ALE F  + ++G +P+ I F+ V+ AC+H GLV+
Sbjct: 671 EMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVE 730

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +GL +F S+  ++ +     H+ CI+D+L R+GR  EAE +I  +PM+ +  +W  LLG 
Sbjct: 731 QGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGC 790

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
           C  +G + + +RA + + ++E E+   +  ++N+
Sbjct: 791 CSKYGEVAMGERAIKMISDLERESGGDFAVLSNV 824



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 222/437 (50%), Gaps = 29/437 (6%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +++ +++ C        G ++H+ +   GF+   ++   L+++Y     + +A+ +FDEM
Sbjct: 481 VFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEM 540

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
             ++V S+N MI+GF   G +E AR LFD+MP R+  SWT +I GY R     EAL L R
Sbjct: 541 PVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLR 600

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M     S S + T+ +V+ A+S +  + +G+ ++GY  + G  SD  V ++L D+Y K 
Sbjct: 601 HMMAGGISPS-EITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKI 659

Query: 208 GSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           GS+  + ++FD+M+D R++VSWT++I  +   G   E   LF+E+ ++GI+PN  TF  V
Sbjct: 660 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 719

Query: 267 LNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RP 324
           +NAC+     E G      M      DP       ++ M  + G +  ++++  G+P   
Sbjct: 720 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEV 779

Query: 325 DLVSWTSLI---AGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLT-------ACTH 373
           ++  W  L+   + Y +  M ++A++   +L  +SG   D  V   VLT       A   
Sbjct: 780 NVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGG--DFAVLSNVLTELGRFSDAEQA 837

Query: 374 AGLVDK----GLQ--YFHSIKEKHGLTYTADHYAC--IVDLLARSGRFHEAEDV----IS 421
             L+D+     LQ     ++K+ H     +  + C   +  + R    H+++ V    + 
Sbjct: 838 RKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVF 897

Query: 422 KMPMKPDKFLWASLLGG 438
           K    P  FLW +LL G
Sbjct: 898 KQIESPTTFLWNTLLRG 914


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 229/375 (61%), Gaps = 1/375 (0%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           ++K G L +A  +FD+MPQ+D  +WTAMI GY +      A+  +R M+      +++  
Sbjct: 164 YSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHV 223

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI-NEARQIFDKM 220
           L SVLSA   ++   L + IH  +M++GF+ +  V +AL+DMY K   + N AR +    
Sbjct: 224 LCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQ 283

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
              +VVS T++I  Y +    E+   +F EL + G+ PN FTF+ ++  CA  A  E G 
Sbjct: 284 GSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGA 343

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H  + +      SF +S L+ MY KCG +  S ++F  +     ++W + I   AQ+G
Sbjct: 344 QLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHG 403

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +A+  F+ +  SG +P+HI FV +LTAC+HAGLVD+GL+YF+S+K+ HG+    +HY
Sbjct: 404 HGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHY 463

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           +CI+D+  R+GR  EAE  I +MP+KP+ + W SLLG CR+ GN +L + AA+ + ++EP
Sbjct: 464 SCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEP 523

Query: 461 ENPATYVTMANIYAS 475
           +N   +V+++ IYAS
Sbjct: 524 DNTGVHVSLSGIYAS 538



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 201/442 (45%), Gaps = 40/442 (9%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +Q C +   L  G+ +H+ L  SG      F++N L+ MY+ C ++  A           
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAV---------- 73

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                                 LFD MP+ +  SWT ++SG  + +   +AL  +  M  
Sbjct: 74  ---------------------RLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCR 112

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
               V  +F LSS   A +A+     G ++H   +R GFD++  V S L+DMY K G + 
Sbjct: 113 -AGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLV 171

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNAC 270
           EA ++FD+M  +D V+WTAMI  Y + G  E     F ++ + G +  +      VL+A 
Sbjct: 172 EACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSAS 231

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN-GMPRPDLVSW 329
                  L + +H  + + G++      +AL  MY+K  +++N+ +V        ++VS 
Sbjct: 232 GGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSA 291

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           TSLI GY +    +KAL  F  L + G +P+   F  ++  C    L+++G Q  H+   
Sbjct: 292 TSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAEVI 350

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           K  L   +   + ++D+  + G    +  +  ++    D   W + +     HG+   A 
Sbjct: 351 KTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTD-IAWNAAINVLAQHGHGREAI 409

Query: 450 RAAEALFE--IEPENPATYVTM 469
           RA + +    I P N  T+V++
Sbjct: 410 RAFDRMTSSGIRP-NHITFVSL 430



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 36/246 (14%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I+  C ++ L   +++  Q   P+   +SS+I+ C     LE+G ++H+ +  +      
Sbjct: 299 IETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDS 358

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+S+ LLDMY KCG IS +  LF E++     ++N  I+   + G   +A   FD     
Sbjct: 359 FVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDR---- 414

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                  M S  +R                      N  T  S+L+A S    +  G + 
Sbjct: 415 -------MTSSGIR---------------------PNHITFVSLLTACSHAGLVDEGLK- 445

Query: 182 HGYIMRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQE 238
           + Y M+   G +     +S + DMYG+ G ++EA +   +M V  +   W +++G     
Sbjct: 446 YFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMR 505

Query: 239 GRREEG 244
           G +E G
Sbjct: 506 GNKELG 511


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 245/459 (53%), Gaps = 42/459 (9%)

Query: 25  SPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           SPS ++  S +  C   + L  G++VH      G      +SN L+ MY +CG +SD   
Sbjct: 478 SPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYW- 536

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                          +F+ M + D  SW  M+        PI  
Sbjct: 537 ------------------------------KVFNSMAEHDEVSWNTMMGVMASSQTPIS- 565

Query: 143 LDLYRMMQNFENS--VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            ++ ++  N      + NK T  ++L+A+S +  L LGK++H  +M+ G   D VV +AL
Sbjct: 566 -EIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNAL 624

Query: 201 SDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
              Y K G +     +F  M DR D +SW +MI  Y   G  +E       +I SG   +
Sbjct: 625 ISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMD 684

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             TF+ +LNACA  AA E G ++H +  R   +      SALV MYSKCG V+ + K+FN
Sbjct: 685 CCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFN 744

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M + +  SW S+I+GYA++G+  KA+E FE +L+S   PDH+ FV VL+AC+HAGLV++
Sbjct: 745 SMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVER 804

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           GL+YF  + + HG+    +HY+C++DLL R+G+  + ++ I +MP++P+  +W ++L  C
Sbjct: 805 GLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVAC 863

Query: 440 RIH---GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           R      N+DL + A+  L EIEP+NP  YV  +N +A+
Sbjct: 864 RQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAA 902



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 223/449 (49%), Gaps = 44/449 (9%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP-GVFISNCLLDMYAKCGNISDAQTLFDE 86
           + S+L ++      L  G+ VH H+  +G     + +SN L++MYAKCG I  A  +F  
Sbjct: 381 LLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQL 440

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           M+  D  S+NT+IS   + G+ E                               EA+  Y
Sbjct: 441 MEATDRISWNTIISALDQNGNCE-------------------------------EAVMHY 469

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
            +M+    S SN F L S LS+ + ++ L  G+++H   ++ G D D  V + L  MYG+
Sbjct: 470 SLMRQSCISPSN-FALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGE 528

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYF-QEGRREEGFALFSELIKSGIRPNAFTFAG 265
           CG++++  ++F+ M + D VSW  M+G     +    E   +F+ +++ G+ PN  TF  
Sbjct: 529 CGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFIN 588

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RP 324
           +L A +  +  ELGKQVH  + + G    +   +AL+  Y+K G++ + + +F  M  R 
Sbjct: 589 LLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRR 648

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D +SW S+I+GY  NG   +A++   L++ SG   D   F  +L AC     +++G++  
Sbjct: 649 DAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGME-L 707

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           H+   +  L       + +VD+ ++ GR   A  + + M  + ++F W S++ G   HG 
Sbjct: 708 HAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQR-NEFSWNSMISGYARHG- 765

Query: 445 LDLAKRAAEALFEI----EPENPATYVTM 469
             L ++A E   E+    E  +  T+V++
Sbjct: 766 --LGRKAIEIFEEMLRSRESPDHVTFVSV 792



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 205/434 (47%), Gaps = 53/434 (12%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDV-------------------------------- 92
           N L+ +YAK G+++   TLF +MQ  D                                 
Sbjct: 239 NALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVL 298

Query: 93  -------CSYN-----TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
                  CS +      ++S F + G  ++A+++F  + Q++  +   +I G VR +   
Sbjct: 299 VWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSE 358

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVS----AIQCLRLGKEIHGYIMRTGF-DSDEV 195
           EA+ ++   +N  +  ++ + +  +LSA++    + + LR+G+ +HG+++RTG  D    
Sbjct: 359 EAVKIFVGTRNTVDVNADTYVV--LLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIA 416

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V + L +MY KCG+I  A +IF  M   D +SW  +I    Q G  EE    +S + +S 
Sbjct: 417 VSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSC 476

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           I P+ F     L++CA       G+QVH    + G D  +  ++ LV MY +CG + +  
Sbjct: 477 ISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYW 536

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMP-DKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
           KVFN M   D VSW +++   A +  P  + ++ F  +++ G  P+ + F+ +L A +  
Sbjct: 537 KVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPL 596

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
            +++ G Q  H+   KHG+         ++   A+SG     E + + M  + D   W S
Sbjct: 597 SVLELGKQ-VHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNS 655

Query: 435 LLGGCRIHGNLDLA 448
           ++ G   +GNL  A
Sbjct: 656 MISGYIYNGNLQEA 669



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 150/318 (47%), Gaps = 34/318 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   + +L+        LE GK+VH+ +   G      + N L+  YAK G++   + L
Sbjct: 581 PNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHL 640

Query: 84  FDEMQE-RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           F  M + RD  S+N+MISG+   G+L++A +            W  + SG          
Sbjct: 641 FTNMSDRRDAISWNSMISGYIYNGNLQEAMDCV----------WLMIHSG---------- 680

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                        + +  T S +L+A +++  L  G E+H + +R+  +SD VV SAL D
Sbjct: 681 ------------QIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVD 728

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KCG ++ A ++F+ M  R+  SW +MI  Y + G   +   +F E+++S   P+  T
Sbjct: 729 MYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVT 788

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           F  VL+AC+     E G +    M   G  P     S ++ +  + G ++  K+    MP
Sbjct: 789 FVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMP 848

Query: 323 -RPDLVSWTSLIAGYAQN 339
             P+ + W +++    Q+
Sbjct: 849 IEPNALIWRTVLVACRQS 866



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 193/401 (48%), Gaps = 21/401 (5%)

Query: 67  LLDMYAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           LL +  + G+ +  + L  E+ +R    D+   N +++ + KG  L  A  +FDEMP+R+
Sbjct: 67  LLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERN 126

Query: 123 NFSWTAMISGYVRYNQPIEALDLYR-MMQNFENSV-SNKFTLSSVLSAVSAIQCLRLG-- 178
             SWT ++SGYV +    EA  ++R M++  +       FT  ++L A       RLG  
Sbjct: 127 AVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFA 186

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKC--GSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            ++HG + +T + S+  V +AL  MYG C  G    A+++FD    RD+++W A++  Y 
Sbjct: 187 VQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYA 246

Query: 237 QEGRREEGFALFSELIKSG----IRPNAFTFAGVLN-ACADHAAEELGKQVHGYMTRIGY 291
           ++G     F LF ++ +      +RP   TF  ++  A     +  +  QV  ++ + G 
Sbjct: 247 KKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGC 306

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
               +  SALV  +++ G  + +K +F  + + + V+   LI G  +    ++A++ F +
Sbjct: 307 SSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIF-V 365

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGL---QYFHSIKEKHGLTYTADHYA-CIVDLL 407
             ++    +   +V +L+A     + ++GL   +  H    + GLT      +  +V++ 
Sbjct: 366 GTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMY 425

Query: 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           A+ G    A  +   M    D+  W +++     +GN + A
Sbjct: 426 AKCGAIESASKIFQLME-ATDRISWNTIISALDQNGNCEEA 465


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 231/404 (57%), Gaps = 41/404 (10%)

Query: 73  KCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISG 132
           K G + +A+ +FDEM ER V ++ TM++G+ +   ++ AR +FD MP++   SWT+M+ G
Sbjct: 184 KEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMG 243

Query: 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192
           YV+  +  +A +L+                  V+     I C                  
Sbjct: 244 YVQNGRIEDAEELF-----------------EVMPVKPVIAC------------------ 268

Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI 252
                +A+    G+ G I +AR++FD M +R+  SW  +I  + + G   E   LF  + 
Sbjct: 269 -----NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQ 323

Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           K G+RP   T   +L+ CA  A+   GKQVH  + R  +D   + AS L+ MY KCG + 
Sbjct: 324 KQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELV 383

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTAC 371
            SK +F+  P  D++ W S+I+GYA +G+ ++AL+ F E+ L   T+P+ + FV  L+AC
Sbjct: 384 KSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSAC 443

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           ++AG+V++GL+ + S++   G+     HYAC+VD+L R+GRF+EA ++I  M ++PD  +
Sbjct: 444 SYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAV 503

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           W SLLG CR H  LD+A+  A+ L EIEPEN  TY+ ++N+YAS
Sbjct: 504 WGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYAS 547



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 180/345 (52%), Gaps = 10/345 (2%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           LC + R+ EA +I  ++S  S   +++++    QN  +++ +K+   +     K  V  +
Sbjct: 182 LCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE---KTEVSWT 238

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           + L+  Y + G I DA+ LF+ M  + V + N MISG  + G + +AR +FD M +R++ 
Sbjct: 239 SMLMG-YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHG 183
           SW  +I  + R    +EALDL+ +MQ  +  V   F TL S+LS  +++  L  GK++H 
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQ--KQGVRPTFPTLISILSVCASLASLHHGKQVHA 355

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            ++R  FD D  V S L  MY KCG + +++ IFD+   +D++ W ++I  Y   G  EE
Sbjct: 356 QLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEE 415

Query: 244 GFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASAL 301
              +F E+  SG  +PN  TF   L+AC+     E G +++  M  + G  P +   + +
Sbjct: 416 ALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACM 475

Query: 302 VHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKA 345
           V M  + G    + ++ + M   PD   W SL+     +   D A
Sbjct: 476 VDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVA 520



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 180/409 (44%), Gaps = 46/409 (11%)

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +N  +   ++ G I +A+ LFD    + + S+N+M++G+        AR LFDEMP R+ 
Sbjct: 20  ANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI 79

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS------SVLSAVSAIQCLRL 177
            SW  ++SGY++  +  EA  ++ +M    N VS    +        V  A S    +  
Sbjct: 80  ISWNGLVSGYMKNGEIDEARKVFDLMPE-RNVVSWTALVKGYVHNGKVDVAESLFWKMPE 138

Query: 178 GKEIHGYIMRTGF-----------------DSDEVVWSALSDMYGKCGSINEARQIFDKM 220
             ++   +M  GF                 D D +  +++     K G ++EAR+IFD+M
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 198

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
            +R V++WT M+  Y Q  R ++   +F  + +           G +       AEEL  
Sbjct: 199 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEEL-- 256

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
                   +   P   A +A++    + G +  +++VF+ M   +  SW ++I  + +NG
Sbjct: 257 -----FEVMPVKPV-IACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNG 310

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG----LTYT 396
              +AL+ F L+ K G +P     + +L+ C         L   H  K+ H       + 
Sbjct: 311 FELEALDLFILMQKQGVRPTFPTLISILSVCA-------SLASLHHGKQVHAQLVRCQFD 363

Query: 397 ADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            D Y  + ++ +  + G   +++ +  + P K D  +W S++ G   HG
Sbjct: 364 VDVYVASVLMTMYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYASHG 411


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 268/473 (56%), Gaps = 10/473 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L +A QI H     +   ++ LI    +N    E   V   +    FKP     + +L  
Sbjct: 72  LADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPA 131

Query: 71  YAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +A  G I  A+++         E +V     ++  ++K G +  AR LF+ M +R+  SW
Sbjct: 132 FANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSW 191

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            A++SGY  +    EA+DL+ +M+  +  + + +T+ S++ A  ++ CL++G  IHG+I+
Sbjct: 192 NAIVSGYSDHGFSEEAIDLFNLMRR-KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFII 250

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR-EEGF 245
           RTG+++D+ + +AL D+Y     +++A ++F +M  +DV +WT M+   F  GR  +   
Sbjct: 251 RTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTG-FSSGRHWDRAI 309

Query: 246 ALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             F++++    ++ ++    G+L++C+   A + G++VH    +  +    F  SA++ M
Sbjct: 310 KHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDM 369

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+ CGN+E++K+ F GM   D+V W ++IAG   NG    A++ F  +  SG  PD   F
Sbjct: 370 YANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTF 429

Query: 365 VGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           V VL AC+HAG+V +GLQ ++H +K  H +     HYAC++D+L R+G+   A   I+ M
Sbjct: 430 VSVLYACSHAGMVYEGLQIFYHMVKTSHDIP-NLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P +PD  ++++LLG CRIHGN+ L    ++ +FE+EP +   YV ++N+YA A
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALA 541



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 209/408 (51%), Gaps = 35/408 (8%)

Query: 37  RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96
           R+ + L+  +++H+ + +SG     F+SN L++ Y  CG ++DA+ +F     ++V S+ 
Sbjct: 32  RKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWT 91

Query: 97  TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
            +ISG  K     +A ++F EM                              M NF+   
Sbjct: 92  ILISGLAKNDCFVEAIDVFREMT-----------------------------MGNFK--- 119

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            N  T+SSVL A + +  +R+ K +H + +R GF+ +  V +AL DMY K G +  ARQ+
Sbjct: 120 PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQL 179

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F+ M +R+VVSW A++  Y   G  EE   LF+ + + G+  + +T   ++ A       
Sbjct: 180 FESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCL 239

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           ++G  +HG++ R GY+      +AL+ +Y     V+++ +VF+ M   D+ +WT ++ G+
Sbjct: 240 QVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGF 299

Query: 337 AQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           +     D+A+++F  +L     + D IV +G+L++C+H+G + +G +  H++  K     
Sbjct: 300 SSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQG-RRVHALAIKTCFAN 358

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
                + ++D+ A  G   +A+     M  K D   W +++ G  ++G
Sbjct: 359 NIFVGSAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNAMIAGNGMNG 405



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 134/272 (49%), Gaps = 2/272 (0%)

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
           S +  ++ L+  ++IH  I+ +G   +  + ++L + Y  CG + +A+QIF     ++VV
Sbjct: 29  SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVV 88

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           SWT +I    +     E   +F E+     +PNA T + VL A A+     + K VH + 
Sbjct: 89  SWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            R G++   F  +ALV MYSK G +  ++++F  M   ++VSW ++++GY+ +G  ++A+
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAI 208

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           + F L+ + G   D    + ++ A    G +  G    H    + G          ++D+
Sbjct: 209 DLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG-IHGFIIRTGYENDKHIKTALMDI 267

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                   +A  V S+M +K D   W  +L G
Sbjct: 268 YVSHNCVDDAHRVFSEMFVK-DVAAWTLMLTG 298


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 250/448 (55%), Gaps = 32/448 (7%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           +++S++        ++ GK+VH  +  +G    V + N L+ MYAKCGN++         
Sbjct: 215 VFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLN--------- 265

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                  Y+ M               LF+    ++  +W+A+I+GY +     +AL L+ 
Sbjct: 266 -------YSLM---------------LFEMCSDKNAITWSALITGYSQAGDSHKALKLFS 303

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M ++   V ++FTL  VL A S +  +  GK+ HGY++++G+++     +AL DMY K 
Sbjct: 304 KM-HYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKF 362

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G   +AR+ FD +++ D+V WT++I  Y Q G+ EE  +++  +    I PN  T A VL
Sbjct: 363 GFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVL 422

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
            AC++ AA E GKQ+H    + G  P     SAL  MY+KCG++E    +F  M + D+V
Sbjct: 423 KACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIV 482

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW ++I+G +QNG   +ALE FE +   GT+PDHI FV VL+AC+H G+V +G  YF+ +
Sbjct: 483 SWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMM 542

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
            ++  L    +HYAC+VD+L+R+G+ +EA++ I    +     LW  LL  CR H N +L
Sbjct: 543 FDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYEL 602

Query: 448 AKRAAEALFEIEPENPATYVTMANIYAS 475
              A E L E+     + YV +++IY +
Sbjct: 603 GAYAGEKLMELGSRESSAYVLLSSIYTA 630



 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 217/384 (56%), Gaps = 12/384 (3%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           DV   +++++ + K G + +AR LFD MP+R+  SWT MISGY       EAL ++ +M+
Sbjct: 146 DVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMR 205

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E ++ N+F  +SVLSA+   + +  GK++H  +++ G      V +AL  MY KCG++
Sbjct: 206 LVEGNL-NEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNL 264

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
           N +  +F+   D++ ++W+A+I  Y Q G   +   LFS++  +G  P+ FT  GVL AC
Sbjct: 265 NYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKAC 324

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +D AA E GKQ HGY+ + GY+   + A+ALV MY+K G   +++K F+ +  PDLV WT
Sbjct: 325 SDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWT 384

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           S+IAGY QNG  ++AL  +  +      P+ +    VL AC++   +++G Q  H+   K
Sbjct: 385 SIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQ-IHARTIK 443

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
           +GL       + +  + A+ G   E   +  +M ++ D   W +++ G   +G+     R
Sbjct: 444 YGLGPELSIRSALSTMYAKCGSLEEGVLIFRRM-LQRDIVSWNAMISGLSQNGH----GR 498

Query: 451 AAEALFE---IEPENP--ATYVTM 469
            A  LFE   +E   P   T+VT+
Sbjct: 499 EALELFEEMRLEGTKPDHITFVTV 522



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 208/422 (49%), Gaps = 37/422 (8%)

Query: 21  ISHP--SPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPGVFISNCLLDMYAKCGNI 77
           + HP  + S Y+ LIQ+  Q ++L++G+ +H+H+ K        +++N L+  YAKCG++
Sbjct: 1   MPHPPQNRSFYNLLIQYADQ-KSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHL 59

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
             A+ +F+ ++ ++V SYN +I G +  GS            +  NF             
Sbjct: 60  HGAKLVFENLKHKNVVSYNCLIHGLSHNGS------------KGSNF------------- 94

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA-IQCLRLGKEIHGYIMRTGFDSDEVV 196
                L+L+R M    N + +  T   V +A +  + C    +++H   ++T    D  V
Sbjct: 95  ----VLELFRRMIA-NNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFV 149

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            S+L + Y K G + EAR++FD+M +R++VSWT MI  Y  +   +E   +F  +     
Sbjct: 150 GSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEG 209

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
             N F F  VL+A       + GKQVH  + + G   +    +ALV MY+KCGN+  S  
Sbjct: 210 NLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLM 269

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F      + ++W++LI GY+Q G   KAL+ F  +  +G  P     VGVL AC+    
Sbjct: 270 LFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAA 329

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           +++G Q  H    K G          +VD+ A+ G   +A      + ++PD  LW S++
Sbjct: 330 IEEGKQT-HGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFL-LEPDLVLWTSII 387

Query: 437 GG 438
            G
Sbjct: 388 AG 389



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 32/248 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS      +++ C    A+EEGK+ H +L  SG++  ++ +  L+DMYAK G   DA+  
Sbjct: 312 PSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKG 371

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD + E D+  + ++I+G+ + G  E+A +++  M  R                      
Sbjct: 372 FDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMR---------------------- 409

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                       + N+ T++SVL A S +  L  GK+IH   ++ G   +  + SALS M
Sbjct: 410 ----------KILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTM 459

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+ E   IF +M+ RD+VSW AMI    Q G   E   LF E+   G +P+  TF
Sbjct: 460 YAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITF 519

Query: 264 AGVLNACA 271
             VL+AC+
Sbjct: 520 VTVLSACS 527


>gi|413948598|gb|AFW81247.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 788

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 246/450 (54%), Gaps = 33/450 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S+ +  C     L  G++VH+     G     F++N L  +YA+CG++  A      M  
Sbjct: 159 SAALTACADAGLLPRGREVHALCAKLGLDAVPFVANALAALYARCGDVDRALAAVGRMGS 218

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
            DV    T+I+ + + G  E+A   F  M  RD  S                        
Sbjct: 219 HDVAVCTTLIASYVQTGRTEEAIEAFVRM-LRDESS------------------------ 253

Query: 150 QNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
               NS S N++T S+V++A   +    LG+++H    R G      V ++L  +Y + G
Sbjct: 254 ----NSASPNEYTFSAVIAACPNMDRAYLGEQLHAQAARRGLSHARSVANSLVKLYSRRG 309

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI--KSGIRPNAFTFAGV 266
            ++ A  IF + V +DVVSW+ +I  Y QEG  EE FALFSE+    S  RPN FT A +
Sbjct: 310 HLSAADAIFRESVVKDVVSWSTIISGYTQEGLAEESFALFSEMRHHSSCPRPNEFTLASL 369

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
            + CA  A+ + G+Q+H      G + ++   SALV+MY K G++ ++  VF+   + D+
Sbjct: 370 FSVCASAASLDTGRQLHALAVAAGLEHHAMVRSALVNMYGKGGSMSDANVVFSNRTKDDV 429

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           +SWT++I G+A++G   +A E FE + + G +PDH+ F+GVLTAC+HAG ++ GL+Y ++
Sbjct: 430 ISWTAMIVGHAEHGHSKEAFELFEEMCRIGLKPDHVTFIGVLTACSHAGELELGLRYLNA 489

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP-DKFLWASLLGGCRIHGNL 445
           + + +GL    +HY C+VDLLAR+GR HEAE++I ++  +  D  +W SLL  C   G  
Sbjct: 490 MNKSYGLEPEKEHYGCVVDLLARAGRIHEAEELIGRIAAEERDGVVWTSLLRACAARGAE 549

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYAS 475
           +  K AAE + E EP     +V MAN+YAS
Sbjct: 550 ETGKIAAERMMEAEPWGSGAHVVMANLYAS 579



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 181/405 (44%), Gaps = 44/405 (10%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P VF+S  L D YAK G +  A  + DEM  R+V S+ T+++   + G    A   F EM
Sbjct: 87  PSVFVSTALADAYAKAGRLDLALQVLDEMPSRNVVSWTTLVASLARAGRRHDALRRFAEM 146

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
                                                  +    S+ L+A +    L  G
Sbjct: 147 --------------------------------RASGVACDSHACSAALTACADAGLLPRG 174

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +E+H    + G D+   V +AL+ +Y +CG ++ A     +M   DV   T +I  Y Q 
Sbjct: 175 REVHALCAKLGLDAVPFVANALAALYARCGDVDRALAAVGRMGSHDVAVCTTLIASYVQT 234

Query: 239 GRREEGFALFSELIK----SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
           GR EE    F  +++    +   PN +TF+ V+ AC +     LG+Q+H    R G    
Sbjct: 235 GRTEEAIEAFVRMLRDESSNSASPNEYTFSAVIAACPNMDRAYLGEQLHAQAARRGLSHA 294

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL- 353
              A++LV +YS+ G++  +  +F      D+VSW+++I+GY Q G+ +++   F  +  
Sbjct: 295 RSVANSLVKLYSRRGHLSAADAIFRESVVKDVVSWSTIISGYTQEGLAEESFALFSEMRH 354

Query: 354 -KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
             S  +P+      + + C  A  +D G Q  H++    GL + A   + +V++  + G 
Sbjct: 355 HSSCPRPNEFTLASLFSVCASAASLDTGRQ-LHALAVAAGLEHHAMVRSALVNMYGKGGS 413

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
             +A  V S    K D   W +++ G   HG+   +K A E LFE
Sbjct: 414 MSDANVVFSNR-TKDDVISWTAMIVGHAEHGH---SKEAFE-LFE 453



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 160/337 (47%), Gaps = 18/337 (5%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLY---RMMQNFENSVSNKFTLSSVLS------- 167
           MP+RD  ++  ++SGY        A+ L+   R   +  +  ++ F LS VL        
Sbjct: 1   MPRRDEVAYATLLSGYAAAADFPGAMALFSRFRASSSQPHDAADPFILSPVLKACASAAA 60

Query: 168 --AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
              +  +        +H + +R+       V +AL+D Y K G ++ A Q+ D+M  R+V
Sbjct: 61  SAGLLPLPHAAAAAALHAFAVRSSSLPSVFVSTALADAYAKAGRLDLALQVLDEMPSRNV 120

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
           VSWT ++    + GRR +    F+E+  SG+  ++   +  L ACAD      G++VH  
Sbjct: 121 VSWTTLVASLARAGRRHDALRRFAEMRASGVACDSHACSAALTACADAGLLPRGREVHAL 180

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
             ++G D   F A+AL  +Y++CG+V+ +      M   D+   T+LIA Y Q G  ++A
Sbjct: 181 CAKLGLDAVPFVANALAALYARCGDVDRALAAVGRMGSHDVAVCTTLIASYVQTGRTEEA 240

Query: 346 LEYFELLLK----SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
           +E F  +L+    +   P+   F  V+ AC +      G Q  H+   + GL++      
Sbjct: 241 IEAFVRMLRDESSNSASPNEYTFSAVIAACPNMDRAYLGEQ-LHAQAARRGLSHARSVAN 299

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            +V L +R G    A D I +  +  D   W++++ G
Sbjct: 300 SLVKLYSRRGHL-SAADAIFRESVVKDVVSWSTIISG 335


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 156/423 (36%), Positives = 242/423 (57%), Gaps = 36/423 (8%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
           GF   +F+++ L DMY+KCG +S+A  +FD+M ++D  ++  MI G+ K GSLE A   F
Sbjct: 71  GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 130

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175
            +M +           G V  +Q +                       SVLSA   ++  
Sbjct: 131 RDMKR----------EGLVGADQHV---------------------FCSVLSASGGLKDG 159

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMI 232
            L K IH  + + GF+ +  V +AL DMY K   +  A ++    +D    +VVS T+MI
Sbjct: 160 WLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLK--IDPGGWNVVSGTSMI 217

Query: 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
             Y +    EE   ++ EL + G+ PN FTF+ ++  CA  A  E G Q+H  + +    
Sbjct: 218 DGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI 277

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
             SF  S LV MY KCG +  S ++FN +     ++W ++I  +AQ+G   +A++ F+ +
Sbjct: 278 RDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM 337

Query: 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
           + SG +P+HI FV +LTAC+HAGLVD+GL+YF+S+KE HG+    +HY+CI+D   R+GR
Sbjct: 338 IYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGR 397

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472
             EA   IS+MP+KP+ + W SLLG CR+ G+ +L + AA+ L ++EP N   +V+++ I
Sbjct: 398 LDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGI 457

Query: 473 YAS 475
           YAS
Sbjct: 458 YAS 460



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 168/329 (51%), Gaps = 5/329 (1%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP+R+  SWT ++SG  +     +AL  +  M+        +F LSS   A +A+     
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRR-AGVAPTRFALSSAARAAAALGAPLP 59

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G ++H   +R GFD++  V S L+DMY KCG ++EA ++FD+M  +D V+WTAMI  Y +
Sbjct: 60  GAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 119

Query: 238 EGRREEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
            G  E     F ++ + G +  +   F  VL+A        L K +H  +T+ G++    
Sbjct: 120 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 179

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRP-DLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
             +AL+ MY+K  +VE++ +V    P   ++VS TS+I GY +    ++AL  +  L + 
Sbjct: 180 VRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQ 239

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +P+   F  ++  C    L+++G Q  H+   K  L   +   + +VD+  + G    
Sbjct: 240 GVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISL 298

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGN 444
           +  + +++  + D   W +++     HG+
Sbjct: 299 SMQLFNEIEYRTD-IAWNAVINVFAQHGH 326



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 35/298 (11%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           K +H  +  +GF+  V + N L+DMYAK  ++  A  +     + D   +N ++SG    
Sbjct: 163 KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL----KIDPGGWN-VVSG---- 213

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
                                T+MI GY+  +   EAL +Y  ++  +    N+FT SS+
Sbjct: 214 ---------------------TSMIDGYIETDCVEEALVIYVELRR-QGVEPNEFTFSSM 251

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           +   +    L  G ++H  +++T    D  V S L DMYGKCG I+ + Q+F+++  R  
Sbjct: 252 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 311

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA--EELGKQVH 283
           ++W A+I  + Q G   E    F  +I SGIRPN   F  +L AC+ HA   +E  K  +
Sbjct: 312 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACS-HAGLVDEGLKYFY 370

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
                 G +P     S ++  Y + G ++ + K  + MP +P+   W SL+      G
Sbjct: 371 SMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRG 428



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 108/229 (47%), Gaps = 9/229 (3%)

Query: 220 MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
           M  R+ VSWT ++    Q     +  A F+ + ++G+ P  F  +    A A   A   G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
            Q+H    R+G+D   F AS L  MYSKCG +  + +VF+ MP+ D V+WT++I GYA+N
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 340 GMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTA 397
           G  + A+  F  + + G    D  VF  VL+A    GL D  L +  H    K G     
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSA--SGGLKDGWLSKSIHCCVTKAGFELEV 178

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
                ++D+ A+S     A  V     +K D   W  + G   I G ++
Sbjct: 179 AVRNALIDMYAKSMDVESASRV-----LKIDPGGWNVVSGTSMIDGYIE 222



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 36/255 (14%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I+  C +  L   +++  Q   P+   +SS+I+ C     LE+G ++H+ +  +      
Sbjct: 221 IETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDS 280

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+ + L+DMY KCG IS +  LF+E++ R   ++N +I+ F + G   +A   FD M   
Sbjct: 281 FVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM--- 337

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                  + SG     +P                  N     S+L+A S    +  G + 
Sbjct: 338 -------IYSGI----RP------------------NHIAFVSLLTACSHAGLVDEGLK- 367

Query: 182 HGYIMRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQE 238
           + Y M+   G +  E  +S + D YG+ G ++EA +   +M +  +   W +++G     
Sbjct: 368 YFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMR 427

Query: 239 GRREEGFALFSELIK 253
           G +E G      L+K
Sbjct: 428 GSKELGEVAAQNLMK 442


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/471 (32%), Positives = 253/471 (53%), Gaps = 6/471 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++ A     ++ H     ++++I  C Q+      + ++  ++  G  P       + + 
Sbjct: 157 VRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNA 216

Query: 71  YAKCGNISDAQTLFD----EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           Y     +S+ + ++      + E DV   N+ ++ F   G L  AR LF++M  RD  +W
Sbjct: 217 YGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTW 276

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             +I+ YV+     EA+ L+  +Q  +   +N  T   +L+  +++  L  GK IH  + 
Sbjct: 277 NIVITFYVQNENFGEAVRLFGRLQQ-DGIKANDITFVLMLNVYTSLTSLAKGKVIHELVK 335

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G+D D VV +AL  +YG+C +  +A +IF  M  +DV++WT M   Y Q G R+E   
Sbjct: 336 EAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQ 395

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF E+   G RP + T   VL+ CA  AA + G+Q+H ++   G+       +AL++MY 
Sbjct: 396 LFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYG 455

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  ++ VF  M + D++ W S++  YAQ+G  D+ L+ F  +   G + D + FV 
Sbjct: 456 KCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVS 515

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-M 425
           VL+A +H+G V  G QYF ++ +   +T T + Y C+VDLL R+GR  EA D++ K+   
Sbjct: 516 VLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGC 575

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            PD  LW +LLG CR H   D AK AAE + E +P +   YV ++N+YA+A
Sbjct: 576 LPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAA 626



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 211/449 (46%), Gaps = 38/449 (8%)

Query: 2   IDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I I C Q     AL + +Q+      P+   Y +++  C    +L++G ++H  +   GF
Sbjct: 78  IGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGF 137

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +  VF+   L++MY KCG++  A   F  ++ RDV S+                      
Sbjct: 138 EGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSW---------------------- 175

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
                    TAMI+  V+++Q   A  LYR MQ  +  V NK TL +V +A      L  
Sbjct: 176 ---------TAMIAACVQHDQFALARWLYRRMQ-LDGVVPNKITLYTVFNAYGDPHYLSE 225

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK I+  +     +SD  V ++  +M+G  G + +AR++F+ MVDRDVV+W  +I  Y Q
Sbjct: 226 GKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQ 285

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
                E   LF  L + GI+ N  TF  +LN      +   GK +H  +   GYD     
Sbjct: 286 NENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVV 345

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+AL+ +Y +C     + K+F  M   D+++WT +   YAQNG   +AL+ F+ +   G 
Sbjct: 346 ATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR 405

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P     V VL  C H   + KG Q  HS   ++G          ++++  + G+  EA 
Sbjct: 406 RPTSATLVAVLDTCAHLAALQKGRQ-IHSHIIENGFRMEMVVETALINMYGKCGKMAEAR 464

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLD 446
            V  KM  K D  +W S+LG    HG  D
Sbjct: 465 SVFEKMA-KRDILVWNSMLGAYAQHGYYD 492



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 176/366 (48%), Gaps = 32/366 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  + + +L+Q C   + ++ G++VH H+   GF+    +   L+ MYA+CG        
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCG-------- 54

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  S+ +A+ +F+ + ++D F+WT MI  Y +      AL
Sbjct: 55  -----------------------SVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRAL 91

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  MQ  E+ +  K T  ++L+A ++ + L+ G EIHG I++ GF+ D  V +AL +M
Sbjct: 92  GMFYQMQE-EDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINM 150

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+  A   F ++  RDVVSWTAMI    Q  +      L+  +   G+ PN  T 
Sbjct: 151 YNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITL 210

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             V NA  D      GK ++  ++    +      ++ ++M+   G + +++++F  M  
Sbjct: 211 YTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVD 270

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V+W  +I  Y QN    +A+  F  L + G + + I FV +L   T    + KG   
Sbjct: 271 RDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVI 330

Query: 384 FHSIKE 389
              +KE
Sbjct: 331 HELVKE 336



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 175/368 (47%), Gaps = 10/368 (2%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           A+++  N   L +A ++   +       ++ +I F  QN    E  ++   L+  G K  
Sbjct: 248 AMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKAN 307

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFD 116
                 +L++Y    +++  + + + ++E    RDV     ++S + +  +  QA  +F 
Sbjct: 308 DITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFV 367

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +M  +D  +WT M   Y +     EAL L++ MQ  E       TL +VL   + +  L+
Sbjct: 368 DMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQ-LEGRRPTSATLVAVLDTCAHLAALQ 426

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            G++IH +I+  GF  + VV +AL +MYGKCG + EAR +F+KM  RD++ W +M+G Y 
Sbjct: 427 KGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYA 486

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYS 295
           Q G  +E   LF+++   G + +A +F  VL+A +   +   G Q    M +     P  
Sbjct: 487 QHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTP 546

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMP--RPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
                +V +  + G ++ +  +   +    PD + W +L+     +   D+A    E +L
Sbjct: 547 ELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVL 606

Query: 354 KSGTQPDH 361
           +    P H
Sbjct: 607 ER--DPSH 612



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 153/313 (48%), Gaps = 3/313 (0%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           ++L   S+ + +  G+ +H ++   GF+ + +V   L  MY +CGS+ EA+Q+F+ +  +
Sbjct: 10  ALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERK 69

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DV +WT MIG Y Q+G  +    +F ++ +  + P   T+  +LNACA   + + G ++H
Sbjct: 70  DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIH 129

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G + + G++   F  +AL++MY+KCG+V  +   F  +   D+VSWT++IA   Q+    
Sbjct: 130 GQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFA 189

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
            A   +  +   G  P+ I    V  A      + +G ++ +S+     +          
Sbjct: 190 LARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVMESDVRVMNSA 248

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-N 462
           +++   +G   +A  +   M +  D   W  ++     + N   A R    L +   + N
Sbjct: 249 MNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKAN 307

Query: 463 PATYVTMANIYAS 475
             T+V M N+Y S
Sbjct: 308 DITFVLMLNVYTS 320



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+   F  +L  C+     + G++VH ++   G++  +     L+ MY++CG+V  +++
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF  + R D+ +WT +I  Y Q G  D+AL  F  + +    P  + +V +L AC     
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           +  G++    I ++    +  D +    ++++  + G    A D   ++  + D   W +
Sbjct: 122 LKDGMEIHGQILQQ---GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTA 177

Query: 435 LLGGCRIHGNLDLAK 449
           ++  C  H    LA+
Sbjct: 178 MIAACVQHDQFALAR 192


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 264/494 (53%), Gaps = 58/494 (11%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKP 59
           LC   +  EAL+ L ++      P     SS++  C     L  GK++H++ LK+     
Sbjct: 273 LCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 332

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             F+ + L+DMY  C  +     +FD M +R +        G                  
Sbjct: 333 NSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKI--------GL----------------- 367

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG- 178
                 W AMI+GY +     EAL L+  M+     ++N  T++ V+ A     C+R G 
Sbjct: 368 ------WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA-----CVRSGA 416

Query: 179 ----KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
               + IHG++++ G D D  V +AL DMY + G I+ A++IF KM DRD+V+W  +I  
Sbjct: 417 FSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITG 476

Query: 235 YFQEGRREEGFALFSEL-----------IKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           Y    R E+   +  ++            +  ++PN+ T   +L +CA  +A   GK++H
Sbjct: 477 YVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y  +          SALV MY+KCG ++ S+KVF+ +P  ++++W  ++  Y  +G   
Sbjct: 537 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQ 596

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
            A++   +++  G +P+ + F+ V  AC+H+G+V++GL+ F+++K+ +G+  ++DHYAC+
Sbjct: 597 DAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACV 656

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           VDLL R+GR  EA  +I+ +P   DK   W+SLLG CRIH NL++ + AA+ L ++EP  
Sbjct: 657 VDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNV 716

Query: 463 PATYVTMANIYASA 476
            + YV +ANIY+SA
Sbjct: 717 ASHYVLLANIYSSA 730



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 198/421 (47%), Gaps = 41/421 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQT 82
           P    + +L++     + ++ GK++H+H+   G+    V ++N L+++Y KCG+      
Sbjct: 91  PDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 150

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD + ER+  S+N++IS      S E+               W               A
Sbjct: 151 VFDRISERNQVSWNSLISSLC---SFEK---------------WEM-------------A 179

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAI---QCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           L+ +R M + E+   + FTL SV  A S     + L +GK++H Y +R G + +  + + 
Sbjct: 180 LEAFRCMLD-EDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINT 237

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MYGK G +  ++ +      RD+V+W  ++    Q  +  E      E++  G+ P+
Sbjct: 238 LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPD 297

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVF 318
            FT + VL AC+       GK++H Y  + G  D  SF  SALV MY  C  V +  +VF
Sbjct: 298 GFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVF 357

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           +GM    +  W ++I GYAQN   ++AL  F E+   +G   +     GV+ AC  +G  
Sbjct: 358 DGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAF 417

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            K  +  H    K GL         ++D+ +R G+   A+ +  KM  + D   W +++ 
Sbjct: 418 SKK-EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTIIT 475

Query: 438 G 438
           G
Sbjct: 476 G 476



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 137/271 (50%), Gaps = 7/271 (2%)

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W  ++   VR N   EA+  Y  M        N F   ++L AV+ +Q + LGK+IH ++
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDN-FAFPALLKAVADLQDMDLGKQIHAHV 119

Query: 186 MRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            + G+  D V V + L ++Y KCG      ++FD++ +R+ VSW ++I       + E  
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEE---LGKQVHGYMTRIGYDPYSFAASAL 301
              F  ++   + P++FT   V  AC++    E   +GKQVH Y  R G +  SF  + L
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTL 238

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V MY K G + +SK +       DLV+W ++++   QN    +ALEY   ++  G +PD 
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDG 298

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
                VL AC+H  ++  G +  H+   K+G
Sbjct: 299 FTISSVLPACSHLEMLRTG-KELHAYALKNG 328


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 152/451 (33%), Positives = 253/451 (56%), Gaps = 33/451 (7%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85
           SI  SL+       ++     +H+  +KS  +  G FI + L+ MY K G   DAQ LFD
Sbjct: 120 SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDG-FIGDRLVSMYFKLGYDEDAQRLFD 178

Query: 86  EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL 145
           EM  +D+ S+N+++SG +  G L    N F  M                   QP      
Sbjct: 179 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESG-------------RQP------ 219

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
                       N+ TL SV+SA + +  L  GK +HG +++ G      V ++L +MYG
Sbjct: 220 ------------NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYG 267

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           K G ++ A Q+F++M  R +VSW +M+  +   G  E+G  LF+ + ++GI P+  T   
Sbjct: 268 KLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVA 327

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +L AC D       + +H Y+ R G++     A+AL+++Y+K G +  S+ +F  +   D
Sbjct: 328 LLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRD 387

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
            ++WT+++AGYA +    +A++ F+L++K G + DH+ F  +L+AC+H+GLV++G +YF 
Sbjct: 388 RIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFE 447

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            + E + +    DHY+C+VDLL RSGR  +A ++I  MPM+P   +W +LLG CR++GN+
Sbjct: 448 IMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNV 507

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +L K  AE L  ++P +   Y+ ++NIY++A
Sbjct: 508 ELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 538



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 183/379 (48%), Gaps = 18/379 (4%)

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           + +F++   R    +N+++S    G S+   R+          F  T +I    +     
Sbjct: 52  EIVFNQQLTRLAVPWNSIVSPVRCGTSISHNRSF--------AFRHTDLIPKQFKRFNTN 103

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
           +   ++R    F    S    + S++ A+S+   +     IH  ++++   SD  +   L
Sbjct: 104 KGCCIFREASQFIVVYS---IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRL 160

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPN 259
             MY K G   +A+++FD+M ++D+VSW +++      G        F  +  +SG +PN
Sbjct: 161 VSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPN 220

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T   V++ACAD  A + GK +HG + ++G    +   ++L++MY K G ++ + ++F 
Sbjct: 221 EVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFE 280

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            MP   LVSW S++  +  NG  +K ++ F L+ ++G  PD    V +L ACT  GL  +
Sbjct: 281 EMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-GR 339

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
             +  H+   + G          +++L A+ GR + +ED+  ++  + D+  W ++L G 
Sbjct: 340 QAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR-DRIAWTAMLAGY 398

Query: 440 RIHGNLDLAKRAAEALFEI 458
            +H       R A  LF++
Sbjct: 399 AVHA----CGREAIKLFDL 413



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 164/356 (46%), Gaps = 35/356 (9%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P+     S++  C    AL+EGK +H  +   G      + N L++MY K G +  A  
Sbjct: 218 QPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 277

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF+EM  R + S+N+M+      G  E+  +LF+ M +       A I+       P +A
Sbjct: 278 LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR-------AGIN-------PDQA 323

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                             T+ ++L A +     R  + IH YI R GF++D ++ +AL +
Sbjct: 324 ------------------TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 365

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           +Y K G +N +  IF+++ DRD ++WTAM+  Y       E   LF  ++K G+  +  T
Sbjct: 366 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 425

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F  +L+AC+     E GK+    M+ +   +P     S +V +  + G +E++ ++   M
Sbjct: 426 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 485

Query: 322 P-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           P  P    W +L+      G  +   E  E LL S    DH  ++ +    + AGL
Sbjct: 486 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLL-SLDPSDHRNYIMLSNIYSAAGL 540


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 253/457 (55%), Gaps = 11/457 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL----F 84
           ++S+I     N   EE       +K +G  P  F     L   +  G ++  + +    F
Sbjct: 525 WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGF 584

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EAL 143
               + DV   N +++ + +  S+ + + +F +MP+ D  SW + I    +Y   + +AL
Sbjct: 585 KWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQAL 644

Query: 144 DLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             +  MMQ       N+ T  ++L+AVS+   L LG +IH  I++     D  + +AL  
Sbjct: 645 KYFLEMMQ--AGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLA 702

Query: 203 MYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
            YGKC  + +   IF +M +R D VSW +MI  Y   G   +   L   +++ G + + F
Sbjct: 703 FYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGF 762

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TFA VL+ACA  A  E G +VH    R   +      SALV MY+KCG ++ + + F  M
Sbjct: 763 TFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELM 822

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
           P  ++ SW S+I+GYA++G   KAL+ F  + + G  PDH+ FVGVL+AC+H GLVD+G 
Sbjct: 823 PVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGY 882

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-CR 440
           ++F S+ E +GL+   +H++C+VDLL R+G   + ED I  MPM P+  +W ++LG  CR
Sbjct: 883 KHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCR 942

Query: 441 IHG-NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +G N +L +RAA+ L E+EP+N   YV ++N++A+ 
Sbjct: 943 ANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAG 979



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 227/446 (50%), Gaps = 23/446 (5%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSG----FKPGVFISN 65
           + +A ++  +I   +   ++S+I  +CR+  A+    K+ S ++  G     +P  +   
Sbjct: 295 IDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVS-AFKLFSVMQMEGVELNLRPNEYTLC 353

Query: 66  CLLDM---YAKCGNISDAQTLFDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
            L+      A CG +   Q L    +    RD+   + +++GF + G ++ A+ +F +M 
Sbjct: 354 SLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMY 413

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE--NSVSNKFTLSSVLSAVSAIQCLRL 177
            R+  +   ++ G  R +Q  EA  +++ M++    NS S    LS+     +  +  R 
Sbjct: 414 DRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRK 473

Query: 178 GKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           G+E+H Y+ R+G  D+   + +AL +MYGKC +I+ A  +F  M  +D VSW +MI    
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
              R EE  + F  + ++G+ P+ F+    L++C+      LG+Q+HG   + G D    
Sbjct: 534 HNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVS 593

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ-NGMPDKALEYFELLLKS 355
            ++AL+ +Y++  ++   +KVF  MP  D VSW S I   A+      +AL+YF  ++++
Sbjct: 594 VSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQA 653

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +P+ + F+ +L A +   ++  G Q  H++  K+ +   AD  A    LLA  G+  +
Sbjct: 654 GWRPNRVTFINILAAVSSFSVLGLGHQ-IHALILKYSV---ADDNAIENALLAFYGKCEQ 709

Query: 416 AED---VISKMPMKPDKFLWASLLGG 438
            ED   + S+M  + D+  W S++ G
Sbjct: 710 MEDCEIIFSRMSERRDEVSWNSMISG 735



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 194/406 (47%), Gaps = 28/406 (6%)

Query: 68  LDMYAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            D Y    ++ DA  L  ++ +     DV   NT+I+ + + G+L  AR LFDEMPQ++ 
Sbjct: 147 FDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNL 206

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQC----LRLGK 179
            SW+ +ISGY +   P EA  L++ + +    + N F + S L A    QC    ++LG 
Sbjct: 207 VSWSCLISGYTQNRMPDEACSLFKGVIS-SGLLPNHFAVGSALRACQ--QCGSTGIKLGM 263

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKC-GSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +IH +I +    SD ++ + L  MY  C GSI++A ++FD++  R+ V+W ++I  Y + 
Sbjct: 264 QIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRR 323

Query: 239 GRREEGFALFSELIKSGI----RPNAFTFAGVLNACADHA--AEELGKQVHGYMTRIGYD 292
           G     F LFS +   G+    RPN +T   ++ A    A     L +Q+   + + G+ 
Sbjct: 324 GDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFL 383

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
              +  SALV+ +++ G ++ +K +F  M   + V+   L+ G A+    ++A + F+ +
Sbjct: 384 RDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM 443

Query: 353 --LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA-CIVDLLAR 409
             L        +V +   T  ++     +  Q  H+   + GL          +V++  +
Sbjct: 444 KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGK 503

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
                 A  V   MP K D   W S++ G      LD  +R  EA+
Sbjct: 504 CTAIDNACSVFQLMPSK-DTVSWNSMISG------LDHNERFEEAV 542



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 153/329 (46%), Gaps = 14/329 (4%)

Query: 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           Y  ++++  S S    L S          L     +H  + +TGF  D    + L ++Y 
Sbjct: 127 YTFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYV 186

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           + G++  AR++FD+M  +++VSW+ +I  Y Q    +E  +LF  +I SG+ PN F    
Sbjct: 187 RIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGS 246

Query: 266 VLNACADHAAE--ELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-GNVENSKKVFNGMP 322
            L AC    +   +LG Q+H ++ ++        ++ L+ MYS C G+++++ +VF+ + 
Sbjct: 247 ALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIK 306

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ----PDHIVFVGVLTACTHAGLVD 378
             + V+W S+I+ Y + G    A + F ++   G +    P+      ++TA     L D
Sbjct: 307 FRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAA--CSLAD 364

Query: 379 KGLQYFHSIK---EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            GL     +    EK G        + +V+  AR G    A+ +  +M  +    +   +
Sbjct: 365 CGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLM 424

Query: 436 LGGCRIHGNLDLAK--RAAEALFEIEPEN 462
           +G  R H   + AK  +  + L EI  E+
Sbjct: 425 VGLARQHQGEEAAKVFKEMKDLVEINSES 453


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 239/415 (57%), Gaps = 35/415 (8%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            T+I  + K G L+ A  LFD +PQ+D+ +W  ++S     N P +A  +   + + E  
Sbjct: 47  KTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILH-EGL 105

Query: 156 VSNKFTLSSVLSAVSAIQCL--RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
             + F  SS++ A + +  +  +LGK++H   + + F  D+VV S+L DMY K    +  
Sbjct: 106 QPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYG 165

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE---------------LIKSGIRP 258
           R +FD + +   +SWTAMI  Y + GR+ E   LF E               L++SG   
Sbjct: 166 RAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNAN 225

Query: 259 NAF-----------------TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
           +A                    + V+ ACA+ A  ELGKQVH  +  +GY+   F ++AL
Sbjct: 226 DALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNAL 285

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V MY+KC +V  +K +F  M R D+VSWTS+I G AQ+G+ ++AL  ++ ++ +G +P+ 
Sbjct: 286 VDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNE 345

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
           + FVG++ AC+H GLV KG   F S+ E  G+  +  HY C++DL +RSG   EAE++I 
Sbjct: 346 VTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIR 405

Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            MP+KPD+  WA+LL  C+ HGN  +A R A+ L +++PE+P++Y+ ++NIYA A
Sbjct: 406 TMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGA 460



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 186/344 (54%), Gaps = 4/344 (1%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQ--NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71
           +L ILH+   P   ++SSLI+ C    +  ++ GK++H+    S F     + + L+DMY
Sbjct: 97  SLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMY 156

Query: 72  AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
           AK       + +FD + E    S+  MISG+ + G   +A  LF E P ++ ++WTA+IS
Sbjct: 157 AKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALIS 216

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
           G V+     +AL L+  M+    S+++   LSSV+ A +      LGK++H  ++  G++
Sbjct: 217 GLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYE 276

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
           S   + +AL DMY KC  +  A+ IF +M  +DVVSWT++I    Q G  EE   L+ ++
Sbjct: 277 SCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDM 336

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGN 310
           + +G++PN  TF G++ AC+       G+ +   M    G  P     + L+ ++S+ G+
Sbjct: 337 VLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGH 396

Query: 311 VENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
           ++ ++ +   MP +PD  +W +L++    +G    A+   + LL
Sbjct: 397 LDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLL 440



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 156/343 (45%), Gaps = 59/343 (17%)

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           + K++H  I+++G +        L D YGKCG + +A ++FD +  +D V+W  ++    
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA--EELGKQVHGYMTRIGYDPY 294
                 + F++   ++  G++P+ F F+ ++ ACA+  +   +LGKQ+H       +   
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL--- 351
               S+LV MY+K    +  + VF+ +     +SWT++I+GYA++G   +ALE F     
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPF 205

Query: 352 ------------LLKSGTQ-----------------PDHIVFVGVLTACTHAGLVDKGLQ 382
                       L++SG                    D +V   V+ AC ++ + + G  
Sbjct: 206 KNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELG-- 263

Query: 383 YFHSIKEKHGLTYTADHYAC------IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
                K+ H +  T  + +C      +VD+ A+      A+ +  +M  K D   W S++
Sbjct: 264 -----KQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRK-DVVSWTSII 317

Query: 437 GGCRIHGNLDLAKRAAE-----ALFEIEPENPATYVTMANIYA 474
            G   HG   LA+ A        L  ++P N  T+V +  IYA
Sbjct: 318 VGTAQHG---LAEEALTLYDDMVLAGVKP-NEVTFVGL--IYA 354


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 246/453 (54%), Gaps = 32/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           PS     S++      R +  GK++H +   +GF   V I+  L+DMYAKCG        
Sbjct: 234 PSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCG-------- 285

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  SL+ AR LFD M +R+  SW +MI  YV+   P EA+
Sbjct: 286 -----------------------SLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            +++ M + E       ++   L A + +  L  G+ IH   +    D +  V ++L  M
Sbjct: 323 VIFQKMLD-EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISM 381

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  ++ A  +F K+  R +VSW AMI  + Q GR  E    FS++    ++P+ FT+
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTY 441

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             V+ A A+ +     K +HG + R   D   F  +ALV MY+KCG +  ++ +F+ M  
Sbjct: 442 VSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE 501

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             + +W ++I GY  +G+   ALE FE + K   +P+ + F+ V++AC+H+GLV+ GL+ 
Sbjct: 502 RHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKC 561

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           FH +KE + +  + DHY  +VDLL R+GR +EA D I +MP+KP   ++ ++LG C+IH 
Sbjct: 562 FHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHK 621

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           N++ A++ AE LFE+ PE+   +V +ANIY +A
Sbjct: 622 NVNFAEKVAERLFELNPEDGGYHVLLANIYRAA 654



 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 216/434 (49%), Gaps = 40/434 (9%)

Query: 26  PSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P +Y  + L++ C     L  GK++H  L  SGF   +F    L +MYAKC  +      
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQV------ 186

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                     +AR +FD MP+RD  SW  +++GY +      AL
Sbjct: 187 -------------------------HEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           ++  +M   EN   +  T+ SVL AVSA++ +R+GKEIHGY MR GFDS   + +AL DM
Sbjct: 222 EMVNLMCE-ENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDM 280

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+  AR +FD M++R+VVSW +MI  Y Q    +E   +F +++  G++P   + 
Sbjct: 281 YAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSV 340

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G L+ACAD    E G+ +H     +  D      ++L+ MY KC  V+ +  +F  +  
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             +VSW ++I G+AQNG P +AL YF  +     +PD   +V V+TA     +     ++
Sbjct: 401 RTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA-KW 459

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H +  ++ L         +VD+ A+ G    A  +I  M  +     W +++ G   HG
Sbjct: 460 IHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIAR-LIFDMMSERHVTTWNAMIDGYGTHG 518

Query: 444 NLDLAKRAAEALFE 457
                 +AA  LFE
Sbjct: 519 ----IGKAALELFE 528



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 2/258 (0%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           + I   I + G   + +  + L  ++ + GS++EA ++F+ +  +  V +  M+  + + 
Sbjct: 54  RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKV 113

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              ++    F  +    + P  + F  +L  C D A   +GK++HG + + G+    FA 
Sbjct: 114 SDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           + L +MY+KC  V  ++KVF+ MP  DLVSW +++AGY+QNGM   ALE   L+ +   +
Sbjct: 174 TGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLK 233

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P  I  V VL A +   L+  G +  H    + G     +    +VD+ A+ G    A  
Sbjct: 234 PSFITIVSVLPAVSALRLIRIG-KEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARL 292

Query: 419 VISKMPMKPDKFLWASLL 436
           +   M ++ +   W S++
Sbjct: 293 LFDGM-LERNVVSWNSMI 309



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 98/236 (41%), Gaps = 50/236 (21%)

Query: 10  RLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EAL    Q+      P    Y S+I    +       K +H  +  +     VF++ 
Sbjct: 418 RPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTT 477

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+DMYAKCG I  A+ +FD M ER V ++N MI G+   G  + A  LF+EM +     
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQK----- 532

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS-------AIQCLRLG 178
                 G +R                      N  T  SV+SA S        ++C  + 
Sbjct: 533 ------GTIR---------------------PNGVTFLSVISACSHSGLVEAGLKCFHMM 565

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMIG 233
           KE   Y +    D     + A+ D+ G+ G +NEA     +M  +  V+ + AM+G
Sbjct: 566 KE--NYSIEPSMDH----YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLG 615


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 263/470 (55%), Gaps = 8/470 (1%)

Query: 12  KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL++  ++     SI     SS++  C +   +EEG+ V    +  GF+  V ++  L
Sbjct: 30  QEALEVYKEMVREEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSL 89

Query: 68  LDMYAKCGNISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           + ++AKCG + +A+++F  M   RD+ S   MI  +   GSL+ +++LF  M  +D  SW
Sbjct: 90  IHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYC--GSLKDSKSLFLTMDVKDVVSW 147

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            AMI+ Y  Y    +A  L+  M    ++  + +T SS+L A ++ + L  G+ +H  I 
Sbjct: 148 NAMIAAYTLYGHDKDAFSLFHRMCTLGHT-PDIYTFSSILGACASPKRLEDGRMLHVRIT 206

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             GFD D  + + L  MY +CGS+  AR+ F  +  +++ +W  M+  Y Q  + ++   
Sbjct: 207 ARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALF 266

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           L+  ++  G  P+ FTF+ V+++CA   A   GK +H   T  G++      +ALV+MY+
Sbjct: 267 LYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYA 326

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG++ ++KK F+G+   D+VSW+++IA  AQ+G  ++ALE   L+   G   + +    
Sbjct: 327 KCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASS 386

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL AC+H G + +G+ YF  + +  G+    ++    +DLL R+G   EAE V+  MP K
Sbjct: 387 VLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFK 446

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
                  +LLGGC++HG++   K   + +  +EPENP +YV + N+YA+A
Sbjct: 447 VSFVALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYVLLNNMYAAA 496



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 182/368 (49%), Gaps = 33/368 (8%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           AR +FD + QR+ FSW+ ++  YV+     EAL++Y+ M   E S+ + +TLSSVL+A +
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISI-DAYTLSSVLAACT 59

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM---------- 220
            +  +  G+ +       GF+ D VV ++L  ++ KCG + EA  +F  M          
Sbjct: 60  KLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVT 119

Query: 221 -------------------VD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
                              +D +DVVSW AMI  Y   G  ++ F+LF  +   G  P+ 
Sbjct: 120 AMIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDI 179

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +TF+ +L ACA     E G+ +H  +T  G+D      + L+ MY++CG++E++++ F  
Sbjct: 180 YTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYS 239

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           + + +L +W +++A YAQ      AL  ++ +L  G  PD   F  V+ +C   G + +G
Sbjct: 240 IEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG 299

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            ++ H      G          +V++ A+ G   +A+     +  K D   W++++    
Sbjct: 300 -KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNK-DVVSWSAMIAASA 357

Query: 441 IHGNLDLA 448
            HG+ + A
Sbjct: 358 QHGHAEEA 365


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 240/463 (51%), Gaps = 62/463 (13%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK+VH  +  +GF   VF+ N L+  Y+KC         +D                   
Sbjct: 145 GKEVHGFVLRTGFDADVFVENALITYYSKC---------YD------------------- 176

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
              L+ +R +FD M +RD  SW +MISGY +     +   LYR M +F     N  T+ S
Sbjct: 177 ---LDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVS 233

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           VL A    Q L  G E+H +I+    + D  V +AL  +Y KCGS++ AR++FD+M ++D
Sbjct: 234 VLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKD 293

Query: 225 VVS-------------------------------WTAMIGRYFQEGRREEGFALFSELIK 253
            V+                               W A+I    Q  R E    L  E+  
Sbjct: 294 EVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQA 353

Query: 254 SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
            G RPNA T + VL+  A  ++ + GK++H Y  +IGY    + A+A++ MY+K G +  
Sbjct: 354 LGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRG 413

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           +++VF+      LV WT++I+ YA +G  + AL  F  +LK G QPD + F  VL AC H
Sbjct: 414 AQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAH 473

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
            G+VDK  + F S+ +K+G+    +HYAC+V  L ++ R  EA++ +SKMP++P   +W 
Sbjct: 474 CGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWG 533

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LL G  I  +++L K   + LFEIEPEN   YV MAN+Y+ A
Sbjct: 534 ALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQA 576



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 215/407 (52%), Gaps = 39/407 (9%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +++ ++K   L  AR +FD++P ++ FS+ AM+  Y  +N+  +ALDL+  + +  +++ 
Sbjct: 65  LVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLAS--SNLV 122

Query: 158 NKFTLSSVLSAVSAIQC--LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           N  +++ +L ++S+     ++LGKE+HG+++RTGFD+D  V +AL   Y KC  ++ +R+
Sbjct: 123 NNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRK 182

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHA 274
           +FD+M  RDVVSW +MI  Y Q G  E+   L+ E++  SG RPN  T   VL AC    
Sbjct: 183 VFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQ 242

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
               G +VH ++     +      +AL+ +Y+KCG+++ ++++F+ M   D V++ ++I+
Sbjct: 243 DLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIIS 302

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD---------------- 378
           G   +G  D++LE F  +        + V  G++    H G++D                
Sbjct: 303 GLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVT 362

Query: 379 -----KGLQYFHSI---KEKHG----LTYTADHYA--CIVDLLARSGRFHEAEDVISKMP 424
                  + YF S+   KE H     + Y  + Y    I+D+ A+SG    A+ V  +  
Sbjct: 363 LSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSK 422

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTM 469
            +    +W +++    +HG+ +LA      + +  I+P+ P T+  +
Sbjct: 423 DRS-LVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPD-PVTFTAV 467



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 165/314 (52%), Gaps = 3/314 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+     S++Q C Q + L  G +VH  +  +  +  + + N L+ +YAKCG++  A+ L
Sbjct: 226 PNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYAREL 285

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FDEM E+D  +Y  +ISG    G ++Q+  LF  M  +   +W A+I+G V+ N+    L
Sbjct: 286 FDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVL 345

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           DL R MQ       N  TLSSVLS ++    L+ GKEIH Y ++ G+  +  V +A+ DM
Sbjct: 346 DLVREMQAL-GFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDM 404

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y K G +  A+++FD+  DR +V WTA+I  Y   G       LF E++K GI+P+  TF
Sbjct: 405 YAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTF 464

Query: 264 AGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             VL ACA     +   ++   M  + G  P     + +V    K   +  +K+  + MP
Sbjct: 465 TAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMP 524

Query: 323 -RPDLVSWTSLIAG 335
             P    W +L+ G
Sbjct: 525 IEPSAKVWGALLHG 538



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 108/245 (44%), Gaps = 18/245 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS++       +L+ GK++HS+    G+   ++++  ++DMYAK G +  AQ +
Sbjct: 358 PNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRV 417

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQP 139
           FD+ ++R +  +  +IS +   G    A  LF EM     Q D  ++TA+++        
Sbjct: 418 FDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMV 477

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLS----AVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            +A +++        S+  K+ +  ++      V A+   R   E   ++ +   +    
Sbjct: 478 DKAWEIFE-------SMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAK 530

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELI 252
           VW AL         +   + + D + +    +  ++  M   Y Q GR +E   +   + 
Sbjct: 531 VWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMN 590

Query: 253 KSGIR 257
           K G++
Sbjct: 591 KVGLQ 595



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            KQ+H  +      P ++ AS LV +YSK  ++  ++ VF+ +P  +  S+ +++  Y+ 
Sbjct: 43  AKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSL 102

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT---- 394
           +     AL+ F   L S    ++I    +L + +   L D  L      KE HG      
Sbjct: 103 HNRHGDALDLFS-SLASSNLVNNISITCLLKSLSSFTLSDVKLG-----KEVHGFVLRTG 156

Query: 395 YTADHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           + AD +    ++   ++      +  V  +M  K D   W S++ G
Sbjct: 157 FDADVFVENALITYYSKCYDLDLSRKVFDRMT-KRDVVSWNSMISG 201


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 169/509 (33%), Positives = 264/509 (51%), Gaps = 39/509 (7%)

Query: 5   LCNQR-RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF- 62
           LC Q   L+ A  +  QI  P+  +Y+ LI+    +    +   +   + S+G  P  F 
Sbjct: 80  LCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFT 139

Query: 63  ----ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
               +  C    +     I  AQ +   M     C  N +++ +     +  AR +FD++
Sbjct: 140 FPFVLKACAAKPFYWEAVIVHAQAIKLGMGPH-ACVQNAILTAYVACRLILSARQVFDDI 198

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
             R   SW +MI+GY +     EA+ L++ M       ++ FTL S+LSA S    L LG
Sbjct: 199 SDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVE-ADVFTLVSLLSASSKHCNLDLG 257

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY--- 235
           + +H YI+ TG + D +V +AL DMY KCG +  A+ +FD+M+D+DVVSWT+M+  Y   
Sbjct: 258 RFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQ 317

Query: 236 ----------------------------FQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
                                        QEG+  E   LF  +  SG+ P+  T   +L
Sbjct: 318 GLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSIL 377

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
           + C++     LGKQ H Y+            ++L+ MY+KCG ++ +  +F GMP  ++V
Sbjct: 378 SCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVV 437

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW  +I   A +G  ++A+E F+ +  SG  PD I F G+L+AC+H+GLVD G  YF  +
Sbjct: 438 SWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIM 497

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
                ++   +HYAC+VDLL R G   EA  +I KMP+KPD  +W +LLG CRI+GNL++
Sbjct: 498 ISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEI 557

Query: 448 AKRAAEALFEIEPENPATYVTMANIYASA 476
           AK+  + L E+   N   YV ++N+Y+ +
Sbjct: 558 AKQIMKQLLELGRFNSGLYVLLSNMYSES 586



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 183/383 (47%), Gaps = 34/383 (8%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V +   ++S   + G L  A  LFD++PQ + F +  +I GY   N P+++L L+R M +
Sbjct: 71  VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
               + N+FT   VL A +A         +H   ++ G      V +A+   Y  C  I 
Sbjct: 131 -AGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLIL 189

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            ARQ+FD + DR +VSW +MI  Y + G  +E   LF E+++ G+  + FT   +L+A +
Sbjct: 190 SARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASS 249

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN--------------------- 310
            H   +LG+ VH Y+   G +  S   +AL+ MY+KCG+                     
Sbjct: 250 KHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTS 309

Query: 311 ----------VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
                     VEN+ ++FN MP  ++VSW S+I    Q G   +A+E F  +  SG  PD
Sbjct: 310 MVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPD 369

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
               V +L+ C++ G +  G Q  H     + +T +      ++D+ A+ G    A D+ 
Sbjct: 370 DATLVSILSCCSNTGDLALGKQA-HCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIF 428

Query: 421 SKMPMKPDKFLWASLLGGCRIHG 443
             MP K +   W  ++G   +HG
Sbjct: 429 FGMPEK-NVVSWNVIIGALALHG 450



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 144/306 (47%), Gaps = 8/306 (2%)

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           TL  +L   S+++ L+L   +H  I+  G  +  V    L  +  + G +  A  +FD++
Sbjct: 41  TLHHLLDQCSSMKRLKL---VHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQI 97

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
              +   +  +I  Y       +   LF +++ +G  PN FTF  VL ACA         
Sbjct: 98  PQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAV 157

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
            VH    ++G  P++   +A++  Y  C  + ++++VF+ +    +VSW S+IAGY++ G
Sbjct: 158 IVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMG 217

Query: 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
             D+A+  F+ +L+ G + D    V +L+A +    +D G ++ H      G+   +   
Sbjct: 218 FCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLG-RFVHLYIVITGVEIDSIVT 276

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
             ++D+ A+ G    A+ V  +M +  D   W S++     + N  L + A +    +  
Sbjct: 277 NALIDMYAKCGHLQFAKHVFDQM-LDKDVVSWTSMVNA---YANQGLVENAVQIFNHMPV 332

Query: 461 ENPATY 466
           +N  ++
Sbjct: 333 KNVVSW 338


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 159/426 (37%), Positives = 245/426 (57%), Gaps = 38/426 (8%)

Query: 54  SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           S GF   +F+++ L DMY+KCG +S+A            C                    
Sbjct: 299 SVGFDTELFVASNLADMYSKCGLLSEA------------C-------------------R 327

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDL-YRMMQNFENSVSNKFTLSSVLSAVSAI 172
           +FD+MPQ+D  +WTAMI GY + N  +EA  L +R M+      +++    SVLSA   +
Sbjct: 328 VFDQMPQKDAVAWTAMIDGYAK-NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGL 386

Query: 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWT 229
           +   L K IH  + + GF+ +  V +AL DMY K   +  A ++    +D    +VVS T
Sbjct: 387 KDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLK--IDPGGWNVVSGT 444

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           +MI  Y +    EE   ++ EL + G+ PN FTF+ ++  CA  A  E G Q+H  + + 
Sbjct: 445 SMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT 504

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
                SF  S LV MY KCG +  S ++FN +     ++W ++I  +AQ+G   +A++ F
Sbjct: 505 DLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAF 564

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           + ++ SG +P+HI FV +LTAC+HAGLVD+GL+YF+S+KE HG+    +HY+CI+D   R
Sbjct: 565 DRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGR 624

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +GR  EA   IS+MP+KP+ + W SLLG CR+ G+ +L + AA+ L ++EP N   +V++
Sbjct: 625 AGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSL 684

Query: 470 ANIYAS 475
           + IYAS
Sbjct: 685 SGIYAS 690



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 198/429 (46%), Gaps = 43/429 (10%)

Query: 24  PSPSI-----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNI 77
           P+P+       +SL+Q C +   L  G+ +H+ L  SG      F++N L+ MY+ C + 
Sbjct: 163 PAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCAD- 221

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
                                         L  A  LF  MP+R+  SWT ++SG  +  
Sbjct: 222 ------------------------------LASALRLFAAMPRRNAVSWTTLVSGLSQNL 251

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
              +AL  +  M+        +F LSS   A +A+      +         GFD++  V 
Sbjct: 252 MHADALAAFAAMRR-AGVAPTRFALSSAARAAAALGAPLRARSCTAS-ASVGFDTELFVA 309

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-I 256
           S L+DMY KCG ++EA ++FD+M  +D V+WTAMI  Y + G  E     F ++ + G +
Sbjct: 310 SNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLV 369

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
             +   F  VL+A        L K +H  +T+ G++      +AL+ MY+K  +VE++ +
Sbjct: 370 GADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASR 429

Query: 317 VFNGMPRP-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
           V    P   ++VS TS+I GY +    ++AL  +  L + G +P+   F  ++  C    
Sbjct: 430 VLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQA 489

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           L+++G Q  H+   K  L   +   + +VD+  + G    +  + +++  + D   W ++
Sbjct: 490 LLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAV 547

Query: 436 LGGCRIHGN 444
           +     HG+
Sbjct: 548 INVFAQHGH 556



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 200/448 (44%), Gaps = 33/448 (7%)

Query: 24  PSPSI-----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNI 77
           P+P+       +SL+Q C +   L  G+ +H+ L  SG      F++N L+ MY+ C ++
Sbjct: 13  PAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADL 72

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKG----------GSLEQA----RNLFDEMPQRDN 123
           + A  LF  M  R+  S+ T++SG ++            ++ +A      L  E    + 
Sbjct: 73  ASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNT 132

Query: 124 FSWTAMISGYVRYNQPIEALDLY--RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                 ++    ++ P   +  +  R+ +    + +    L+S+L +      LR G+ +
Sbjct: 133 LGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLL 192

Query: 182 HGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           H  ++ +G  +    + + L  MY  C  +  A ++F  M  R+ VSWT ++    Q   
Sbjct: 193 HARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLM 252

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
             +  A F+ + ++G+ P  F  +    A A   A    +      + +G+D   F AS 
Sbjct: 253 HADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASAS-VGFDTELFVASN 311

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQP 359
           L  MYSKCG +  + +VF+ MP+ D V+WT++I GYA+NG  + A+  F  + + G    
Sbjct: 312 LADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGA 371

Query: 360 DHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           D  VF  VL+A    GL D  L +  H    K G          ++D+ A+S     A  
Sbjct: 372 DQHVFCSVLSA--SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASR 429

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLD 446
           V     +K D   W  + G   I G ++
Sbjct: 430 V-----LKIDPGGWNVVSGTSMIDGYIE 452



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 150/327 (45%), Gaps = 37/327 (11%)

Query: 46  KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG 105
           K +H  +  +GF+  V + N L+DMYAK  ++  A  +     + D   +N ++SG    
Sbjct: 393 KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL----KIDPGGWN-VVSG---- 443

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
                                T+MI GY+  +   EAL +Y  ++  +    N+FT SS+
Sbjct: 444 ---------------------TSMIDGYIETDCVEEALVIYVELRR-QGVEPNEFTFSSM 481

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           +   +    L  G ++H  +++T    D  V S L DMYGKCG I+ + Q+F+++  R  
Sbjct: 482 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 541

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA--EELGKQVH 283
           ++W A+I  + Q G   E    F  +I SGIRPN   F  +L AC+ HA   +E  K  +
Sbjct: 542 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACS-HAGLVDEGLKYFY 600

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMP 342
                 G +P     S ++  Y + G ++ + K  + MP +P+   W SL+      G  
Sbjct: 601 SMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSK 660

Query: 343 DKALEYFELLLK--SGTQPDHIVFVGV 367
           +      + L+K   G    H+   G+
Sbjct: 661 ELGEVAAQNLMKLEPGNTGIHVSLSGI 687



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 36/255 (14%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I+  C +  L   +++  Q   P+   +SS+I+ C     LE+G ++H+ +  +      
Sbjct: 451 IETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDS 510

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+ + L+DMY KCG IS +  LF+E++ R   ++N +I+ F + G   +A   FD M   
Sbjct: 511 FVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM--- 567

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                  + SG     +P                  N     S+L+A S    +  G + 
Sbjct: 568 -------IYSGI----RP------------------NHIAFVSLLTACSHAGLVDEGLK- 597

Query: 182 HGYIMRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQE 238
           + Y M+   G +  E  +S + D YG+ G ++EA +   +M +  +   W +++G     
Sbjct: 598 YFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMR 657

Query: 239 GRREEGFALFSELIK 253
           G +E G      L+K
Sbjct: 658 GSKELGEVAAQNLMK 672



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 141/364 (38%), Gaps = 77/364 (21%)

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYG 205
           R+ +    + +    L+S+L +      LR G+ +H  ++ +G  +    + + L  MY 
Sbjct: 8   RLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYS 67

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF-- 263
            C  +  A ++F  M  R+ VSWT ++    Q     +  A F+ + ++G+ P    +  
Sbjct: 68  HCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYET 127

Query: 264 ----------------------------------------------AGVLNACADHAAEE 277
                                                         A +L +C       
Sbjct: 128 KFHNTLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLR 187

Query: 278 LGKQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
            G+ +H  +   G    S F A+ L+ MYS C ++ ++ ++F  MPR + VSWT+L++G 
Sbjct: 188 RGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGL 247

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT------------ACTHAGLVDKGLQYF 384
           +QN M   AL  F  + ++G  P                      +CT +  V    + F
Sbjct: 248 SQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELF 307

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            +              + + D+ ++ G   EA  V  +MP K D   W +++ G   +G+
Sbjct: 308 VA--------------SNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAKNGS 352

Query: 445 LDLA 448
           L+ A
Sbjct: 353 LEAA 356


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 257/467 (55%), Gaps = 36/467 (7%)

Query: 13  EALQILHQISHPS--PSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           EA+ +  Q+S     P ++  +S++  C    A+ +G++VH+H+  +  +   ++ N L+
Sbjct: 322 EAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALI 381

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKC +                               L +AR +F+ + + D  S+ A
Sbjct: 382 DMYAKCEH-------------------------------LTEARAVFEALAEDDAISYNA 410

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           MI GY R      A++++  M+ + +   +  T  S+L   S+   L L K+IHG I+++
Sbjct: 411 MIEGYARLGDLTGAVEIFGKMR-YCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKS 469

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G   D    SAL D+Y K   +++A+ +F  M +RD+V W AMI    Q  R EE   LF
Sbjct: 470 GTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLF 529

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
           + L  SG+ PN FTF  ++   +  A+   G+Q H  + + G D     ++AL+ MY+KC
Sbjct: 530 ARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKC 589

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G +E  + +F      D++ W S+I+ YAQ+G  ++AL  F ++  +G +P+++ FV VL
Sbjct: 590 GFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVL 649

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC HAGLVD+GL +F+S+K K+ +    +HYA +V+L  RSG+ H A++ I +MP++P 
Sbjct: 650 SACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPV 709

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             +W SLL  C + GN+++ + A E     +P +    V M+NIYAS
Sbjct: 710 ATIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYAS 756



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 210/415 (50%), Gaps = 34/415 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + +S ++ C Q+RA   G++VH      G    VF+   L+++YAK G I      
Sbjct: 135 PNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRI------ 188

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                    + A ++FD +P R+  +WTA+I+GY +  Q   AL
Sbjct: 189 -------------------------DAAMSVFDALPARNPVTWTAVITGYSQAGQAGVAL 223

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +L+  M   +    ++F L+S  SA S +  +  G++IHGY  RT  +SD  V +AL D+
Sbjct: 224 ELFGRM-GLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDL 282

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KC  +  AR++FD M +R++VSWT MI  Y Q     E  ++F +L ++G +P+ F  
Sbjct: 283 YCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFAC 342

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +LN+C   AA   G+QVH ++ +   +   +  +AL+ MY+KC ++  ++ VF  +  
Sbjct: 343 TSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAE 402

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D +S+ ++I GYA+ G    A+E F  +     +P  + FV +L   +    ++   Q 
Sbjct: 403 DDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQ- 461

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
            H +  K G +      + ++D+ ++     +A+ V S M  + D  +W +++ G
Sbjct: 462 IHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNR-DMVIWNAMIFG 515



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 198/403 (49%), Gaps = 48/403 (11%)

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D+   N ++ G++K G L  AR LFD MP R+  SW + IS Y ++ +  +AL L+    
Sbjct: 64  DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFP 123

Query: 151 NF-----ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           +      +    N+F L+S L A +  +  R G+++HG   + G D++  V +AL ++Y 
Sbjct: 124 SAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYA 183

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           K G I+ A  +FD +  R+ V+WTA+I  Y Q G+      LF  +   G+RP+ F  A 
Sbjct: 184 KAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLAS 243

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
             +AC+     E G+Q+HGY  R   +  +   +AL+ +Y KC  +  ++++F+ M   +
Sbjct: 244 AASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRN 303

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-----------THA 374
           LVSWT++IAGY QN +  +A+  F  L ++G QPD      +L +C            HA
Sbjct: 304 LVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHA 363

Query: 375 GLVDKGLQ------------------------YFHSIKEKHGLTYTADHYACIVDLLARS 410
            ++   L+                         F ++ E   ++Y A     +++  AR 
Sbjct: 364 HVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNA-----MIEGYARL 418

Query: 411 GRFHEAEDVISKM---PMKPDKFLWASLLGGCRIHGNLDLAKR 450
           G    A ++  KM    +KP    + SLLG      +L+L+K+
Sbjct: 419 GDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQ 461



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 8/280 (2%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224
           +LS ++  +  R+    H   + +G   D  + + L   Y K G + +AR++FD M  R+
Sbjct: 36  LLSCLAGDRLRRVLPPAHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRN 95

Query: 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIR------PNAFTFAGVLNACADHAAEEL 278
           +VSW + I  Y Q GR ++   LF+    +G        PN F  A  L ACA   A   
Sbjct: 96  LVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARF 155

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           G+QVHG   ++G D   F  +ALV++Y+K G ++ +  VF+ +P  + V+WT++I GY+Q
Sbjct: 156 GEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQ 215

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
            G    ALE F  +   G +PD  V     +AC+  G V+ G Q  H    +      A 
Sbjct: 216 AGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQ-IHGYAYRTAAESDAS 274

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
               ++DL  +  R   A  +   M  + +   W +++ G
Sbjct: 275 VVNALIDLYCKCSRLLLARRLFDSMENR-NLVSWTTMIAG 313


>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 222/384 (57%), Gaps = 4/384 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I+ + +  S+  A  LFDEMP  +  SWT++++GYV   QP  AL L+  M      
Sbjct: 63  NHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLR-SPV 121

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V N FT ++ + A S +  LR G+  H ++   G+  + VV S+L DMYGKC  + +AR 
Sbjct: 122 VPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARG 181

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHA 274
           +F+ M  +++VSWT+MI  Y Q    +E   +F E    S   PN +  A V++ACA   
Sbjct: 182 VFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLG 241

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
               GK +HG    +G D     AS LV MY+KCG+++ S KVFN +  P ++ +TS+I 
Sbjct: 242 RLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIV 301

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
             A+ G   K+L+ FE +++ G +P+HI  VGVL AC+H+GL ++GL Y  S+ EK+G+ 
Sbjct: 302 STAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIM 361

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK--FLWASLLGGCRIHGNLDLAKRAA 452
               HY C+VD+LAR G   +A D+   M + PD    LW +LL   R HG +D+A  A 
Sbjct: 362 PETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHGRVDIAAEAC 421

Query: 453 EALFEIEPENPATYVTMANIYASA 476
           + L     +    YVT++N+YASA
Sbjct: 422 QQLVNSNRQVAGAYVTLSNVYASA 445



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 166/342 (48%), Gaps = 41/342 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +++ I+ C     L  G+  H+H++  G+   + + + L+DMY KC ++  A+ +
Sbjct: 123 PNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGV 182

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M  +++ S+ +MI+ + +    +                               EAL
Sbjct: 183 FNSMSCKNIVSWTSMIAAYAQNAHGD-------------------------------EAL 211

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++R   +  +   N + L+SV+SA +++  L  GK +HG  +  G DS EVV S L DM
Sbjct: 212 KVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDM 271

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS++ + ++F+++ +  V+ +T+MI    + G   +   LF E+++ G++PN  T 
Sbjct: 272 YAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITL 331

Query: 264 AGVLNACADHAAEELGKQVHGYMT----RIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            GVL+AC+       G     Y+T    + G  P +   + +V M ++ G ++ +  +  
Sbjct: 332 VGVLHACSHSGLPNEGLY---YLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAK 388

Query: 320 GM---PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            M   P    + W +L++    +G  D A E  + L+ S  Q
Sbjct: 389 SMDVAPDDKALLWGALLSASRCHGRVDIAAEACQQLVNSNRQ 430



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 145/289 (50%), Gaps = 13/289 (4%)

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           +Q  EN   +    + ++S++S           H   ++ GF ++ V  + L + Y +  
Sbjct: 24  LQTIENLSRHLRNCNDLISSIST----------HSIALKLGFLNNTVNVNHLINCYVRFR 73

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SI  A Q+FD+M + +VVSWT+++  Y   G+      LF E+++S + PN FTFA  + 
Sbjct: 74  SIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSPVVPNDFTFATAIK 133

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+  +    G+  H ++   GY       S+L+ MY KC +V  ++ VFN M   ++VS
Sbjct: 134 ACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCKNIVS 193

Query: 329 WTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           WTS+IA YAQN   D+AL+ F E    S   P+  +   V++AC   G +  G +  H  
Sbjct: 194 WTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSG-KVMHGA 252

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
               G   +    + +VD+ A+ G    ++ V +++   P    + S++
Sbjct: 253 AISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRIS-NPSVIPYTSMI 300



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 13  EALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           EAL++  + +     HP+P + +S+I  C     L  GK +H    S G      +++ L
Sbjct: 209 EALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVL 268

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           +DMYAKCG++  +  +F+ +    V  Y +MI    K G   ++  LF+EM ++
Sbjct: 269 VDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRK 322


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 224/376 (59%), Gaps = 2/376 (0%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + K G L  AR LFDEMP R+  +W A+++  V   +P+E ++ Y  ++     + N  +
Sbjct: 166 YFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRG-AGGMPNVVS 224

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           + +  +A + +  L LG++ +G++ + GF  D  V +++ D YGKC  + +AR +FD M 
Sbjct: 225 VCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMG 284

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            R+ VSW +M+  Y Q G  EE F ++    ++G  P  F  + VL  CA     +LG+ 
Sbjct: 285 VRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRA 344

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H    R   D   F ASALV MY KCG +E++++VF  MP+ +LV+W ++I GYA  G 
Sbjct: 345 LHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGD 404

Query: 342 PDKALEYFE-LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              AL  F+ +++   T P++I  V VLTAC+  GL  +G + F ++K + G+    +HY
Sbjct: 405 AHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHY 464

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           AC+VDLL R+G    A  +I  MPM+P   +W +LLGGC++HG  +L + AAE LFE++P
Sbjct: 465 ACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELDP 524

Query: 461 ENPATYVTMANIYASA 476
           ++   +V ++N+ ASA
Sbjct: 525 QDSGNHVLLSNMLASA 540


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 256/459 (55%), Gaps = 33/459 (7%)

Query: 20  QISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77
           Q++  SP  ++   L++ C     L+ G+ VH+ +   GF   VF+ N L+ +YAKC  +
Sbjct: 111 QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRL 170

Query: 78  SDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN 137
             A+T+F+ +                              +P+R   SWTA++S Y +  
Sbjct: 171 GSARTVFEGL-----------------------------PLPERTIVSWTAIVSAYAQNG 201

Query: 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           +P+EAL+++  M+  +    +   L SVL+A + +Q L+ G+ IH  +++ G + +  + 
Sbjct: 202 EPMEALEIFSHMRKMDVK-PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
            +L+ MY KCG +  A+ +FDKM   +++ W AMI  Y + G   E   +F E+I   +R
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317
           P+  +    ++ACA   + E  + ++ Y+ R  Y    F +SAL+ M++KCG+VE ++ V
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLV 380

Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           F+     D+V W+++I GY  +G   +A+  +  + + G  P+ + F+G+L AC H+G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +G  +F+ + + H +     HYAC++DLL R+G   +A +VI  MP++P   +W +LL 
Sbjct: 441 REGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            C+ H +++L + AA+ LF I+P N   YV ++N+YA+A
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAA 538



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 185/362 (51%), Gaps = 15/362 (4%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           +I   +  G +  AR +FD++P+   F W A+I GY R N   +AL +Y  MQ       
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQ-LARVSP 117

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + FT   +L A S +  L++G+ +H  + R GFD+D  V + L  +Y KC  +  AR +F
Sbjct: 118 DSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVF 177

Query: 218 D--KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +   + +R +VSWTA++  Y Q G   E   +FS + K  ++P+      VLNA      
Sbjct: 178 EGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQD 237

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
            + G+ +H  + ++G +       +L  MY+KCG V  +K +F+ M  P+L+ W ++I+G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           YA+NG   +A++ F  ++    +PD I     ++AC   G +++    +  +       Y
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS---DY 354

Query: 396 TADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
             D +  + ++D+ A+ G    A  V  +  +  D  +W++++ G  +HG      RA E
Sbjct: 355 RDDVFISSALIDMFAKCGSVEGARLVFDR-TLDRDVVVWSAMIVGYGLHG------RARE 407

Query: 454 AL 455
           A+
Sbjct: 408 AI 409



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 146/284 (51%), Gaps = 8/284 (2%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           S+ F  S + SA    Q     K+IH  ++  G      + + L       G I  ARQ+
Sbjct: 20  SDSFYASLIDSATHKAQL----KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQV 75

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           FD +    +  W A+I  Y +    ++   ++S +  + + P++FTF  +L AC+  +  
Sbjct: 76  FDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHL 135

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD--LVSWTSLIA 334
           ++G+ VH  + R+G+D   F  + L+ +Y+KC  + +++ VF G+P P+  +VSWT++++
Sbjct: 136 QMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVS 195

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            YAQNG P +ALE F  + K   +PD +  V VL A T    + +G +  H+   K GL 
Sbjct: 196 AYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG-RSIHASVVKMGLE 254

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              D    +  + A+ G+   A+ +  KM   P+  LW +++ G
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 256/462 (55%), Gaps = 42/462 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++L +   P    +  +++ C   R ++ G  VH  +  +GF+  +++S CLL MY  CG
Sbjct: 96  EMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCG 155

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            ++                                   +F+++P+ +  +W ++ISG+V 
Sbjct: 156 EVN-------------------------------WGLRVFEDIPKLNVVAWGSLISGFVN 184

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
            N+  +A++ +R MQ+      N+  +  +L A         G+    Y  ++ F+ + +
Sbjct: 185 NNRFSDAIEAFREMQSI-GVKPNETIMVDLLVAC--------GRCFDPYC-QSKFEFNVI 234

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           + ++L DMY KCG +  AR +FD M +R++VSW ++I  Y Q G  EE   +FS+++  G
Sbjct: 235 LATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLG 294

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           I P+  TF  V+ A       +LG+ +H Y+++ G+   +    ALV+MY+K GN E++K
Sbjct: 295 IAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAK 354

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHA 374
           K+F  + + D ++WT +I G A +G  +KAL  F+ + + G   PD I ++GVL AC+H 
Sbjct: 355 KMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHI 414

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           GLV++G +YF  +++ +GL  T +HY C+VD+L+R+GRF EAE ++  MP++P   +W +
Sbjct: 415 GLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGA 474

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           LL GC IH NLDLA R    + E E      YV ++NIYA A
Sbjct: 475 LLNGCEIHENLDLADRIRSMVSESEELGSGIYVLLSNIYAKA 516



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 179/378 (47%), Gaps = 28/378 (7%)

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
           +L  AR++F+ +     + W +MI GY     P +AL  Y+ M   +    + FT   VL
Sbjct: 55  NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLR-KGYSPDYFTFPYVL 113

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
            A S ++ ++ G  +HG++++TGF+ +  V + L  MY  CG +N   ++F+ +   +VV
Sbjct: 114 KACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVV 173

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           +W ++I  +    R  +    F E+   G++PN      +L AC                
Sbjct: 174 AWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGR-------------- 219

Query: 287 TRIGYDPYS--------FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
               +DPY           A++L+ MY+KCG++  ++ +F+GMP  +LVSW S+I GY+Q
Sbjct: 220 ---CFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQ 276

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           NG  ++A+  F  +L  G  PD + F  V+ A    G    G Q  H+   K G    A 
Sbjct: 277 NGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLG-QTIHAYVSKTGFVKDAA 335

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
               +V++ A++G    A+ +   +  K D   W  ++ G   HG+ + A    + + E 
Sbjct: 336 IVCALVNMYAKTGNAESAKKMFEDLE-KKDTIAWTVVIIGLASHGHGNKALSIFQRMQEE 394

Query: 459 EPENPATYVTMANIYASA 476
               P     +  +YA +
Sbjct: 395 GNATPDGITYLGVLYACS 412



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 139/287 (48%), Gaps = 14/287 (4%)

Query: 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG---SINEARQIFDKMV 221
           +LS +   + +    ++HG ++++    + +  S L D    C    +++ AR +F+ + 
Sbjct: 8   ILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 67

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
              V  W +MI  Y      ++    + E+++ G  P+ FTF  VL AC+     + G  
Sbjct: 68  CPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSC 127

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VHG++ + G++   + ++ L+HMY  CG V    +VF  +P+ ++V+W SLI+G+  N  
Sbjct: 128 VHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNR 187

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              A+E F  +   G +P+  + V +L AC      D    Y  S  E + +  T+    
Sbjct: 188 FSDAIEAFREMQSIGVKPNETIMVDLLVACGRC--FDP---YCQSKFEFNVILATS---- 238

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
            ++D+ A+ G    A  +   MP + +   W S++ G   +G+ + A
Sbjct: 239 -LIDMYAKCGDMRTARYLFDGMPER-NLVSWNSIITGYSQNGDAEEA 283


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 250/479 (52%), Gaps = 63/479 (13%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +  L++   + ++L EG ++H      GF    F+   L+ MYA CG I+          
Sbjct: 125 FPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIA---------- 174

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                                +AR +FD+M  RD  +W+ MI GY +     +AL L+  
Sbjct: 175 ---------------------EARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+N+ N   ++  LS+VLSA      L  GK IH +IM      D  + SAL  MY  CG
Sbjct: 214 MKNY-NVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCG 272

Query: 209 S-------------------------------INEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           S                               I  AR +F++MV +D+V W+AMI  Y +
Sbjct: 273 SMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAE 332

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               +E   LF+E+   GI+P+  T   V+ ACA   A +  K +H ++ + G+      
Sbjct: 333 SDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPI 392

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +AL+ MY+KCG++E ++++F+ MPR +++SWT +I+ +A +G    AL +F  +     
Sbjct: 393 NNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENI 452

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P+ I FVGVL AC+HAGLV++G + F+S+  +H +T    HY C+VDL  R+    EA 
Sbjct: 453 EPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREAL 512

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +++  MP+ P+  +W SL+  CR+HG ++L + AA+ L E++P++   +V ++NIYA A
Sbjct: 513 ELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKA 571



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 197/414 (47%), Gaps = 37/414 (8%)

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           AQ L  ++          +IS      SL+ A ++F+ +P+ +       +    R  +P
Sbjct: 44  AQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEP 103

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            + L +Y  M+  +    ++F+   +L A+S ++ L  G EIHG   + GFDSD  V + 
Sbjct: 104 EKTLLVYERMRT-QGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTG 162

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY  CG I EAR +FDKM  RDVV+W+ MI  Y Q G   +   LF E+    + P+
Sbjct: 163 LVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPD 222

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYM--TRIGYDPY----------------------- 294
               + VL+AC        GK +H ++    I  DP+                       
Sbjct: 223 EMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFE 282

Query: 295 ------SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
                   A++A+V  YSK G +EN++ VFN M + DLV W+++I+GYA++  P +AL  
Sbjct: 283 KMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNL 342

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  +   G +PD +  + V+TAC H G +D+  ++ H   +K+G          ++++ A
Sbjct: 343 FNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYA 401

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           + G    A  +  KMP K +   W  ++    +HG+   A  A     ++E EN
Sbjct: 402 KCGSLERARRIFDKMPRK-NVISWTCMISAFAMHGD---AGSALRFFHQMEDEN 451



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 181/345 (52%), Gaps = 7/345 (2%)

Query: 2   IDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           ID  C      +AL +  ++ +    P   + S+++  C +   L  GK +H  +  +  
Sbjct: 195 IDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNI 254

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
                + + L+ MYA CG++  A  LF++M  +++ +   M++G++K G +E AR++F++
Sbjct: 255 VVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQ 314

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M ++D   W+AMISGY   + P EAL+L+  MQ+      ++ T+ SV++A + +  L  
Sbjct: 315 MVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSL-GIKPDQVTMLSVITACAHLGALDQ 373

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            K IH ++ + GF     + +AL +MY KCGS+  AR+IFDKM  ++V+SWT MI  +  
Sbjct: 374 AKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAM 433

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV-HGYMTRIGYDPYSF 296
            G        F ++    I PN  TF GVL AC+     E G+++ +  +      P   
Sbjct: 434 HGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHV 493

Query: 297 AASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNG 340
               +V ++ +   +  + ++   MP  P+++ W SL+A    +G
Sbjct: 494 HYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHG 538



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 14/270 (5%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG---SINEARQIFDKM 220
           ++ SA+S+   L   K++H  I+R+  D    +   L  +   C    S++ A  +F+ +
Sbjct: 25  TLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKL--VISSCALSSSLDYALSVFNLI 82

Query: 221 VDRDVVSWTAMIGRYFQEGRR----EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
              +    T +  R+ +E  R    E+   ++  +   G+  + F+F  +L A +   + 
Sbjct: 83  PKPE----THLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSL 138

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
             G ++HG   ++G+D   F  + LV MY+ CG +  ++ +F+ M   D+V+W+ +I GY
Sbjct: 139 VEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGY 198

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
            Q+G+ + AL  FE +     +PD ++   VL+AC  AG +  G +  H    ++ +   
Sbjct: 199 CQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG-KMIHDFIMENNIVVD 257

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMK 426
               + +V + A  G    A ++  KM  K
Sbjct: 258 PHLQSALVTMYASCGSMDLALNLFEKMTPK 287


>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 222/384 (57%), Gaps = 4/384 (1%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N +I+ + +  S+  A  LFDEMP  +  SWT++++GYV   QP  AL L+  M      
Sbjct: 63  NHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLR-SPV 121

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V N FT ++ + A S +  LR G+  H ++   G+  + VV S+L DMYGKC  + +AR 
Sbjct: 122 VPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARG 181

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACADHA 274
           +F+ M  +++VSWT+MI  Y Q    +E   +F E    S   PN +  A V++ACA   
Sbjct: 182 VFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLG 241

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
               GK +HG    +G D     AS LV MY+KCG+++ S KVFN +  P ++ +TS+I 
Sbjct: 242 RLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIV 301

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
             A+ G   K+L+ FE +++ G +P+HI  VGVL AC+H+GL ++GL Y  S+ EK+G+ 
Sbjct: 302 STAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIM 361

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK--FLWASLLGGCRIHGNLDLAKRAA 452
               HY C+VD+LAR G   +A D+   M + PD    LW +LL   R HG +D+A  A 
Sbjct: 362 PETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHGRVDIAAEAC 421

Query: 453 EALFEIEPENPATYVTMANIYASA 476
           + L     +    YVT++N+YASA
Sbjct: 422 QQLVNSNRQVAGAYVTLSNVYASA 445



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 166/342 (48%), Gaps = 41/342 (11%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +++ I+ C     L  G+  H+H++  G+   + + + L+DMY KC ++  A+ +
Sbjct: 123 PNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGV 182

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M  +++ S+ +MI+ + +    +                               EAL
Sbjct: 183 FNSMSCKNIVSWTSMIAAYAQNAHGD-------------------------------EAL 211

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++R   +  +   N + L+SV+SA +++  L  GK +HG  +  G DS EVV S L DM
Sbjct: 212 KVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDM 271

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS++ + ++F+++ +  V+ +T+MI    + G   +   LF E+++ G++PN  T 
Sbjct: 272 YAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITL 331

Query: 264 AGVLNACADHAAEELGKQVHGYMT----RIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            GVL+AC+       G     Y+T    + G  P +   + +V M ++ G ++ +  +  
Sbjct: 332 VGVLHACSHSGLPNEGLY---YLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAK 388

Query: 320 GM---PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            M   P    + W +L++    +G  D A E  + L+ S  Q
Sbjct: 389 SMDVAPDDKALLWGALLSASRCHGRVDIAAEACQQLVNSNRQ 430



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 145/289 (50%), Gaps = 13/289 (4%)

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           +Q  EN   +    + ++S++S           H   ++ GF ++ V  + L + Y +  
Sbjct: 24  LQTIENLSRHLRNCNDLISSIST----------HSIALKLGFLNNTVNVNHLINCYVRFR 73

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           SI  A Q+FD+M + +VVSWT+++  Y   G+      LF E+++S + PN FTFA  + 
Sbjct: 74  SIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSPVVPNDFTFATAIK 133

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           AC+  +    G+  H ++   GY       S+L+ MY KC +V  ++ VFN M   ++VS
Sbjct: 134 ACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCKNIVS 193

Query: 329 WTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           WTS+IA YAQN   D+AL+ F E    S   P+  +   V++AC   G +  G +  H  
Sbjct: 194 WTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSG-KVMHGA 252

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
               G   +    + +VD+ A+ G    ++ V +++   P    + S++
Sbjct: 253 AISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRIS-NPSVIPYTSMI 300



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 37/289 (12%)

Query: 13  EALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           EAL++  + +     HP+P + +S+I  C     L  GK +H    S G      +++ L
Sbjct: 209 EALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVL 268

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DN 123
           +DMYAKCG++  +  +F+ +    V  Y +MI    K G   ++  LF+EM ++    ++
Sbjct: 269 VDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNH 328

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFEN-----SVSNKFTLSSVLSAVSAI-QCLRL 177
            +   ++        P E   LY +   +E         +   +  +L+ V  + +   L
Sbjct: 329 ITLVGVLHACSHSGLPNEG--LYYLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDL 386

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV--DRDVV-SWTAMIGR 234
            K      M    D   ++W AL       G ++ A +   ++V  +R V  ++  +   
Sbjct: 387 AKS-----MDVAPDDKALLWGALLSASRCHGRVDIAAEACQQLVNSNRQVAGAYVTLSNV 441

Query: 235 YFQEGRREEGFALFSELIKSG-----------IRPNAFTF-AGVLNACA 271
           Y   G  E+   L  E+ ++G           I+ +++ F AG + +CA
Sbjct: 442 YASAGDMEKAHKLRVEMKRTGVHKEPGCSWIEIKDSSYIFYAGEITSCA 490


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 144/469 (30%), Positives = 262/469 (55%), Gaps = 19/469 (4%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    SS+++ C +   ++ GK +H+ +  +G    V + N +LD+Y KC     A++ 
Sbjct: 132 PNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESF 191

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+ M E+DV S+N MI  + + G +E++  +F   P +D  SW  +I G ++      AL
Sbjct: 192 FELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLAL 251

Query: 144 D-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           + LY M+ +        F+++ +L  VS++  + +G+++HG ++  G +SD  + S+L +
Sbjct: 252 EQLYCMVAHGTEFSPVTFSIALIL--VSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVE 309

Query: 203 MYGKCGSINEARQIFD----------------KMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           MYGKCG +++A  I                  K     +VSW++M+  Y   G+ E+G  
Sbjct: 310 MYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMK 369

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
            F  ++   I  +  T A +++ACA+    E GKQ+H Y+ +IG    ++  S+L+ MYS
Sbjct: 370 TFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYS 429

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           K G+++++  +F  +  P++V WTS+I+G A +G   +A+  FE +L  G  P+ + FVG
Sbjct: 430 KSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVG 489

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL AC+H GL+++G +YF  +K+ + +    +HY  +V+L  R+G   EA++ I +  + 
Sbjct: 490 VLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSIS 549

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
               +W S L  CR+H N ++ K  +E L +  P +P  Y+ ++N+ +S
Sbjct: 550 HFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSS 598



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 209/432 (48%), Gaps = 62/432 (14%)

Query: 94  SYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE-ALDLYRMMQNF 152
           S N +++ + K  +L+ A  LFDE+  ++  +WT +ISG+ R     E    L+R MQ  
Sbjct: 69  SANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQA- 127

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           + +  N++TLSSVL   S    ++ GK IH +I+R G   D V+ +++ D+Y KC     
Sbjct: 128 DGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEY 187

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE---------------------- 250
           A   F+ M+++DVVSW  MIG Y +EG  E+   +F                        
Sbjct: 188 AESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYE 247

Query: 251 ---------LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
                    ++  G   +  TF+  L   +  +  E+G+Q+HG +   G +   +  S+L
Sbjct: 248 RLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSL 307

Query: 302 VHMYSKCGNVENSKKVFNGM----------------PRPDLVSWTSLIAGYAQNGMPDKA 345
           V MY KCG ++ +  +   +                P+  +VSW+S+++GY  NG  +  
Sbjct: 308 VEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDG 367

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
           ++ F  ++      D      +++AC +AG+++ G Q  H+  +K GL   A   + ++D
Sbjct: 368 MKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQ-IHAYIQKIGLRIDAYVGSSLID 426

Query: 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE------IE 459
           + ++SG   +A  +  ++  +P+  LW S++ GC +HG      + A +LFE      I 
Sbjct: 427 MYSKSGSLDDALMIFEQIK-EPNVVLWTSMISGCALHGQ----GKEAISLFEGMLNLGII 481

Query: 460 PENPATYVTMAN 471
           P N  T+V + N
Sbjct: 482 P-NEVTFVGVLN 492



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 37/281 (13%)

Query: 179 KEIHGYIMRTGFDSDEVVWSA--LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
           + +HG+  + G  S +++ SA  L  +Y K  +++ A ++FD++  ++  +WT +I  + 
Sbjct: 52  RALHGHYFKKG--SLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFA 109

Query: 237 QE-GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
           +  G  E  F+LF E+   G  PN +T + VL  C+     + GK +H ++ R G     
Sbjct: 110 RAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDV 169

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE----- 350
              ++++ +Y KC   E ++  F  M   D+VSW  +I  Y + G  +K+LE F      
Sbjct: 170 VLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNK 229

Query: 351 --------------------------LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
                                      ++  GT+   + F   L   +   LV+ G Q  
Sbjct: 230 DVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQ-L 288

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           H      GL       + +V++  + GR  +A  ++  +P+
Sbjct: 289 HGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPL 329


>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
          Length = 565

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 223/417 (53%), Gaps = 41/417 (9%)

Query: 59  PGVF-ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           PG   ++N L+D+YAKC ++  A T   ++   D  S+N+++    +  S+  A +LF  
Sbjct: 114 PGRLPVANALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFAA 173

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           MP R   SW AM+  YV       A  ++  M                            
Sbjct: 174 MPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPT-------------------------- 207

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
                          D   WS L   Y KCGS+  AR++FD+M  +++V+WTAMI  Y Q
Sbjct: 208 --------------RDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQ 253

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  +E  ALF E+  +GI P+A T  GV++A +   + EL   V  Y+ +   +     
Sbjct: 254 SGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKV 313

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV M++KCGNV+ +   F  + +PD   +T+LI+G A +G    AL+ FE +     
Sbjct: 314 LTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSV 373

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
            PD I FVGVLTAC+HAGLVDKGL Y+ ++ + +G+   ADHYAC+VD+L R+GR  EA 
Sbjct: 374 WPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAF 433

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +++  MPM P      +LL  C+ HGN+++A+  A  LFE+EP N   Y+ ++NIYA
Sbjct: 434 EMVQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYA 490



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 98/275 (35%), Gaps = 69/275 (25%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KE+L +  ++      P  +    +I    Q  + E    V S++     +    +   L
Sbjct: 258 KESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTAL 317

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DM+AKCGN+ +A + F E+ + D   Y  +ISG    G  + A  +F+ M  +  +   
Sbjct: 318 VDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW--- 374

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                         +  T   VL+A S           H  ++ 
Sbjct: 375 -----------------------------PDPITFVGVLTACS-----------HAGLVD 394

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G D     W A+   YG     +    + D            M+GR    GR EE F +
Sbjct: 395 KGLD----YWEAMVKYYGMERRADHYACVVD------------MLGR---AGRLEEAFEM 435

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
             + +  G  P A     +L+AC  H   E+ + V
Sbjct: 436 V-QTMPMGPHPGA--LGALLSACKTHGNVEIAEIV 467


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 260/506 (51%), Gaps = 42/506 (8%)

Query: 9   RRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           R L+ A ++  QI  P+  +++ LI+    +    +   ++  +   G  P  F    +L
Sbjct: 82  RDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVL 141

Query: 69  DMYA--KC---GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
              A   C   G    AQ+ F        C  N +++ +   G +  AR +FD++ +R  
Sbjct: 142 KACAAKSCYWLGVCVHAQS-FKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTL 200

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
            SW +MI+GY +  +  EA+ ++R MQ    E  V   FTL  +LS  +      LG+ +
Sbjct: 201 VSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDV---FTLVGLLSVSTKHGNFDLGRFV 257

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY------ 235
           H +++ TG + D +V +AL DMY KCG++  A+ +FD+M+D+DVVSWT MI  Y      
Sbjct: 258 HLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLI 317

Query: 236 -------------------------FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
                                     QEG   E   LF  +  SG+  N  T   +L++C
Sbjct: 318 DCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSC 377

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +      LGKQ H Y+        +   +A++ MY+KCG ++ +  VF GMP  + VSW 
Sbjct: 378 SHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWN 437

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
            +I   A +G   +A+E FE +  SG  PD I F G+L+AC+H+GLVD G  YF  +   
Sbjct: 438 VIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLT 497

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
            G++   +HYAC+VDLL R G   EA  +I KMP+KPD  +W++LLG CR +GNL + K+
Sbjct: 498 FGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQ 557

Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
             + L E+   N   YV ++N+Y+ +
Sbjct: 558 IMKQLLELGRYNSGLYVLLSNMYSES 583



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 193/383 (50%), Gaps = 34/383 (8%)

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V +   ++S   +   L  A  LFD++PQ + F +  +I GY   + PI++L LYR M  
Sbjct: 68  VLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMV- 126

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            +  + N+FT+  VL A +A  C  LG  +H    + G  S   V +A+ ++Y  CG I 
Sbjct: 127 CDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLIT 186

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            AR++FD + +R +VSW +MI  Y + GR EE   +F E+ + G+ P+ FT  G+L+   
Sbjct: 187 SARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVST 246

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
            H   +LG+ VH +M   G +  S   +AL+ MY+KCGN++ +K VF+ M   D+VSWT 
Sbjct: 247 KHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTC 306

Query: 332 LIAGYAQNGMPDKALEYFE-------------------------------LLLKSGTQPD 360
           +I  YA +G+ D ALE+F                                 +  SG   +
Sbjct: 307 MINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMAN 366

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
               V +L++C+H G +  G Q  HS    + +T +A     I+D+ A+ G    A DV 
Sbjct: 367 DTTLVAILSSCSHMGDLALGKQA-HSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVF 425

Query: 421 SKMPMKPDKFLWASLLGGCRIHG 443
             MP K +   W  ++G   +HG
Sbjct: 426 FGMPEK-NAVSWNVIIGALALHG 447



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 131/278 (47%), Gaps = 4/278 (1%)

Query: 173 QCLRLG--KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
           QC+ L   K +H  I+  G  +  +    L     +   +  A ++FD++   +   +  
Sbjct: 45  QCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNH 104

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           +I  Y       +   L+  ++  GI PN FT   VL ACA  +   LG  VH    ++G
Sbjct: 105 LIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLG 164

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
              ++   +A++++Y  CG + ++++VF+ +    LVSW S+I GY++ G  ++A+  F 
Sbjct: 165 MGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFR 224

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            + + G +PD    VG+L+  T  G  D G ++ H      G+   +     ++D+ A+ 
Sbjct: 225 EMQEVGLEPDVFTLVGLLSVSTKHGNFDLG-RFVHLHMVVTGIEIDSIVTNALMDMYAKC 283

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           G    A+ V  +M +  D   W  ++     HG +D A
Sbjct: 284 GNLKCAKSVFDQM-LDKDVVSWTCMINAYANHGLIDCA 320


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 276/521 (52%), Gaps = 70/521 (13%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLK-SSGFKPGVFISNCLLDMY---------- 71
            P+P +Y++++  C   +ALEEGK +HS +  + G K  V + N LL MY          
Sbjct: 118 QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAK 177

Query: 72  ---------------------AKCGNISDAQTLFDEMQ---------------------- 88
                                A+ G+  +A  L+++M                       
Sbjct: 178 RLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLD 237

Query: 89  --------------ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
                         E D+   N +++ + +   L+ A  +F  +P+RD  SW+AMI+ + 
Sbjct: 238 QGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFA 297

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
             +   EA++ Y  MQ  E    N +T +SVL A +++  LR G+ +H  I+  G+    
Sbjct: 298 ETDLFDEAIEFYSKMQ-LEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITL 356

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
           V  +AL D+Y   GS++EAR +FD++ +RD   WT +IG Y ++G R     L+ E+  +
Sbjct: 357 VNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNT 416

Query: 255 GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
              P     ++ V++ACA   A    +Q H  +   G       A++LV+MYS+ GN+E+
Sbjct: 417 TKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLES 476

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           +++VF+ M   D ++WT+LIAGYA++G    AL  ++ +   G +P  + F+ VL AC+H
Sbjct: 477 ARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSH 536

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           AGL ++G Q F SI+  + +     HY+CI+DLL+R+GR  +AE++I+ MP++P+   W+
Sbjct: 537 AGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWS 596

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           SLLG  RIH ++  A  AA  + +++P +PA+YV ++N++A
Sbjct: 597 SLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHA 637



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 204/380 (53%), Gaps = 13/380 (3%)

Query: 69  DMYAKCGNISDAQTLFDEMQ---ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
           D   +C ++   + + D +      +V   N ++  + K GS+  AR  FD + +++++S
Sbjct: 32  DALRQCQDLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYS 91

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W +M++ Y +      ALDLY+ M    N V      ++VL A ++I+ L  GK IH  I
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRMDLQPNPV----VYTTVLGACASIKALEEGKAIHSRI 147

Query: 186 MRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
             T G   D ++ ++L  MY KCGS+ +A+++F++M  R V SW AMI  Y Q G  EE 
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEA 207

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             L+ ++    + P+  TF  VL+AC++    + G+++H  ++  G +      +AL+ M
Sbjct: 208 IRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTM 264

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y++C  ++++ K+F  +PR D+VSW+++IA +A+  + D+A+E++  +   G +P++  F
Sbjct: 265 YARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTF 324

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
             VL AC   G +  G +  H     +G   T  +   +VDL    G   EA  +  ++ 
Sbjct: 325 ASVLLACASVGDLRAG-RAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE 383

Query: 425 MKPDKFLWASLLGGCRIHGN 444
            + D+ LW  L+GG    G+
Sbjct: 384 NR-DEGLWTVLIGGYSKQGH 402



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 5/165 (3%)

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F  + +V  Y KCG+V +++  F+ + R +  SW S++  YAQNG    AL+ ++   + 
Sbjct: 59  FLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYK---RM 115

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
             QP+ +V+  VL AC     +++G      I    GL         ++ + A+ G   +
Sbjct: 116 DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLED 175

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           A+ +  +M  +     W +++      G+ + A R  E + ++EP
Sbjct: 176 AKRLFERMSGRSVSS-WNAMIAAYAQSGHFEEAIRLYEDM-DVEP 218


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 270/473 (57%), Gaps = 11/473 (2%)

Query: 12  KEALQILHQISHPSPSIYSSLI-QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++A  +  +++      ++ LI  +CR+  A  E  ++   ++ SG +P   + +C+L  
Sbjct: 273 EDACILFPELTEKDVVSWTGLIGAYCRRGLA-REAVELFQEMEQSGLQPDEVLVSCVLSG 331

Query: 71  YAKCGNISDAQTLFDEMQERD----VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
                N++  +     +  R+    V   N++IS + K   ++ A  +F  + QRD+ SW
Sbjct: 332 LGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESW 391

Query: 127 TAMISGYVRYNQPIEALDLYRMMQ--NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           + M++GY +    ++ L+LYR MQ  + +  + +  +L S +S+ S +  LRLG+ +H Y
Sbjct: 392 SLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCY 451

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD-KMVDRDVVSWTAMIGRYFQEGRREE 243
            ++   D + +  ++L  MYG+CG+   A +IF    + RDVV+W A+I  Y   GR  +
Sbjct: 452 SIKCLLDENSIT-NSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSND 510

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
             +L+ +++   ++PN+ T   V++ACA+ AA E G+ +H Y+  +G +     ++ALV 
Sbjct: 511 ALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVD 570

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+KCG +  ++ +F+ M + D+V+W  +I+GY  +G  ++AL+ F  +     +P+ + 
Sbjct: 571 MYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLT 630

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ +L+AC HAGLVD+G + F  +   + L     HYAC+VDLL +SG   EAED++  M
Sbjct: 631 FLAILSACCHAGLVDEGRKLFIRMG-GYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAM 689

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P+KPD  +W +LL  C++H N ++  R A+  F  +P N   Y+ M+N Y SA
Sbjct: 690 PIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSA 742



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 154/297 (51%), Gaps = 9/297 (3%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           ++S ++  G    A   F   P  D F W +++  +   +    AL  +R M+    +  
Sbjct: 53  LVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASDFDSALSAHRRMRA-SGARP 111

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF---DSDEVVWSALSDMYGKCGSINEAR 214
           ++FT     SA + +  L +G  +H Y ++ G    D    V S+L  MY +CGS+ +A 
Sbjct: 112 SRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAV 171

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK----SGIRPNAFTFAGVLNAC 270
           ++FD+MV+RDVV+WTA++    + G   +G     ++I+    SG RPN+ T    L AC
Sbjct: 172 KLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEAC 231

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
                   G+ +HGY  + G    +   SAL  MYSKC   E++  +F  +   D+VSWT
Sbjct: 232 GVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWT 291

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
            LI  Y + G+  +A+E F+ + +SG QPD ++   VL+    +  V++G + FH++
Sbjct: 292 GLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRG-KAFHAV 347



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 193/405 (47%), Gaps = 50/405 (12%)

Query: 45  GKKVHSHLKSSGFKPG---VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           G  VHS+    G   G   V +S+ L+ MYA+CG++ DA                     
Sbjct: 132 GTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAV-------------------- 171

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD-LYRMMQNFENSVS--N 158
                       LFDEM +RD  +WTA++SG VR  +  + +  L +M++   +S +  N
Sbjct: 172 -----------KLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPN 220

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
             T+ S L A   +  L  G+ +HGY ++ G     +V SAL  MY KC    +A  +F 
Sbjct: 221 SRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFP 280

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           ++ ++DVVSWT +IG Y + G   E   LF E+ +SG++P+    + VL+     A    
Sbjct: 281 ELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNR 340

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           GK  H  + R  +      A++L+ MY K   V+ +  VF  + + D  SW+ ++AGY +
Sbjct: 341 GKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCK 400

Query: 339 NGMPDKALE-YFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQ-YFHSIK---EKH 391
            G+  K LE Y ++  +   +   D    V  +++C+  G +  G   + +SIK   +++
Sbjct: 401 AGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDEN 460

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
            +T +      ++ +  R G F  A  + +   ++ D   W +L+
Sbjct: 461 SITNS------LIGMYGRCGNFELACKIFAVAKLRRDVVTWNALI 499



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 14/288 (4%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
            +H     +G  S     + L   Y   G    A   F      D   W +++  +    
Sbjct: 33  RLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCAS 92

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY---DPYSF 296
             +   +    +  SG RP+ FT     +A A+ AA  +G  VH Y  + G    D    
Sbjct: 93  DFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVA 152

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-- 354
            +S+LV+MY++CG++ ++ K+F+ M   D+V+WT++++G  +NG   K + Y   +++  
Sbjct: 153 VSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLA 212

Query: 355 --SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412
             SG +P+       L AC   G +  G +  H    K G+   A   + +  + ++   
Sbjct: 213 GDSGARPNSRTMESGLEACGVLGELSAG-RCLHGYAVKEGIRDCALVVSALFSMYSKCDM 271

Query: 413 FHEAEDVISKMPMKPDKFLWASLLGG-CRIHGNLDLAKRAAEALFEIE 459
             +A  +  ++  K D   W  L+G  CR      LA+ A E   E+E
Sbjct: 272 TEDACILFPELTEK-DVVSWTGLIGAYCR----RGLAREAVELFQEME 314


>gi|222636729|gb|EEE66861.1| hypothetical protein OsJ_23658 [Oryza sativa Japonica Group]
          Length = 728

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 232/417 (55%), Gaps = 6/417 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+  + +++++ C     +E GK+VH  +  +G    V + N +LDMYAKCG    A+ +
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F  M ERD  S+N  I    + G +  +  LFDE P RD  SW  +ISG +R     +AL
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADAL 229

Query: 144 D-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
             L RM Q     V N +T S+       +    LG+++HG ++    + D  V S+L D
Sbjct: 230 SHLRRMAQ--AGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMD 287

Query: 203 MYGKCGSINEARQIFDKM--VDRDV-VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           MY KCG +  A  +FD    + RD+  +W+ M+  Y Q GR EE   LF  +++ G+  +
Sbjct: 288 MYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAAD 347

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            FT   V  ACA+    E G+QVHG + ++ Y   +  ASA+V MY+KCGN+E+++ +F+
Sbjct: 348 RFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFD 407

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
                ++  WTS++  YA +G    A+E FE +      P+ I  VGVL+AC+H GLV +
Sbjct: 408 RACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSE 467

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           G  YF  ++E++G+  + +HY CIVDL  RSG   +A++ I +  +  +  +W +LL
Sbjct: 468 GELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLL 524



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 174/381 (45%), Gaps = 40/381 (10%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           AR +FDE P R    WT  ISG  R  +  + +  +  M     +  N F L++V+   +
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
            +  +  GK +HG+++R G   D V+ +A+ DMY KCG    AR++F  M +RD VSW  
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 231 MIGRYFQEGRREEGFALFSE-------------------------------LIKSGIRPN 259
            IG   Q G       LF E                               + ++G+  N
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFN 243

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
            +T++            +LG+Q+HG +     +  +F  S+L+ MY KCG +E +  VF+
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFD 303

Query: 320 ---GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
               + R    +W++++AGY QNG  ++AL+ F  +L+ G   D      V  AC + G+
Sbjct: 304 HWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGM 363

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           V++G Q  H   EK      A   + IVD+ A+ G   +A  +  +   K +  +W S+L
Sbjct: 364 VEQGRQ-VHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSML 421

Query: 437 GGCRIHGNLDLAKRAAEALFE 457
                HG      R A  LFE
Sbjct: 422 CSYASHGQ----GRIAIELFE 438



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 115/278 (41%), Gaps = 39/278 (14%)

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVLNA 269
           ++AR +FD+   R    WT  I    + GR  +G   F+E++  G   PNAF  A V+  
Sbjct: 62  HDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRC 121

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM-------- 321
           CA     E GK+VHG+M R G        +A++ MY+KCG  E +++VF  M        
Sbjct: 122 CAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSW 181

Query: 322 -----------------------PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
                                  P  D  SW ++I+G  ++G    AL +   + ++G  
Sbjct: 182 NIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVV 241

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            +H  +           L D G Q  H       L   A   + ++D+  + G    A  
Sbjct: 242 FNHYTYSTAFVLAGMLLLPDLGRQ-LHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAAS 300

Query: 419 VISKM-PMKPD-KFLWASLLGGCRIHGN----LDLAKR 450
           V     P+  D  F W++++ G   +G     LDL +R
Sbjct: 301 VFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRR 338


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 150/408 (36%), Positives = 234/408 (57%), Gaps = 43/408 (10%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVL 166
           L+ +  +FD +   + F W  M+  Y++ N   +AL LY++M   +N+V  + +T   V+
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLM--VKNNVGPDNYTYPLVV 136

Query: 167 SAVSAIQCLRLG-KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK------ 219
            A  A++ L  G KEIH ++++ GFDSD  V + L +MY  CG++ +AR++FD+      
Sbjct: 137 QA-CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDS 195

Query: 220 ----------------------------MVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
                                       M ++D+VSW+A+I  Y Q G  EE   +F E+
Sbjct: 196 VSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM 255

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS----K 307
             +G+R +      VL+ACA  +  + GK +HG + R+G + Y    +AL+HMYS    K
Sbjct: 256 NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMK 315

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG VEN+ +VFNGM    + SW +LI G A NG+ +++L+ F  +  +G  P+ I F+GV
Sbjct: 316 CGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGV 375

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L AC H GLVD+G  +F S+ EKHG+     HY C+VDLL R+G  +EAE +I  MPM P
Sbjct: 376 LGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAP 435

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           D   W +LLG C+ HG+ ++ +R    L E++P++   +V ++NI+AS
Sbjct: 436 DVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFAS 483



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 186/348 (53%), Gaps = 14/348 (4%)

Query: 24  PSPSIYSSLIQFCRQNRALE-EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P    Y  ++Q C   R LE  GK++H H+   GF   V++ N L++MYA CGN+ DA+ 
Sbjct: 127 PDNYTYPLVVQACAV-RLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARK 185

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQ---ARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           LFDE    D  S+N++++G+ K G + Q   A  LF+EM ++D  SW+A+ISGY +    
Sbjct: 186 LFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMY 245

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
            EAL ++  M N      ++  + SVLSA + +  ++ GK IHG ++R G +S   + +A
Sbjct: 246 EEALVMFIEM-NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNA 304

Query: 200 L----SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           L    SDMY KCG +  A ++F+ M ++ V SW A+I      G  E    +FSE+  +G
Sbjct: 305 LIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNG 364

Query: 256 IRPNAFTFAGVLNACADHAAEELGK-QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
           + PN  TF GVL AC      + G+      + + G +P       +V +  + G +  +
Sbjct: 365 VIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEA 424

Query: 315 KKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           +K+   MP  PD+ +W +L+    ++G  +        L++   QPDH
Sbjct: 425 EKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDH 470


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 247/462 (53%), Gaps = 34/462 (7%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +L Q  +P     S  +  C   R +  G+ +   +  +G +    +   L+ MY K G+
Sbjct: 52  MLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGH 111

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
            +DA ++F                                 M  RD  +W+AM++ Y R 
Sbjct: 112 CTDAASVFLR-------------------------------MSHRDVVAWSAMVAAYARN 140

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
             P EAL L+R M + +    NK TL S L A +++  LR G  +H  +   G  S  VV
Sbjct: 141 GHPREALGLFRQM-DLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVV 199

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            +AL ++YGKCG I  A + F ++V+++VV+W+A+   Y +  R  +   +   +   G+
Sbjct: 200 GTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGL 259

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG--YDPYSFAASALVHMYSKCGNVENS 314
            PN+ TF  VL+ACA  AA + G+++H     +G   +   +  +ALV+MYSKCGN+  +
Sbjct: 260 VPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALA 319

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
             +F+ +   DLV W SLIA  AQ+G  +KALE FE +   G QP  I F  VL AC+HA
Sbjct: 320 GDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHA 379

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G++D+G ++F S    HG+   A+H+ C+VDLL R+G   ++ED++  MP +P    W +
Sbjct: 380 GMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMA 439

Query: 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            LG CR + N+D A  AAE LF+++P   A YV ++N+YA A
Sbjct: 440 FLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKA 481



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 181/377 (48%), Gaps = 7/377 (1%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           M+S +++ G++   R  FDEMP  D  SW A+I+ Y+  N+  +   L+      +    
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIG-NRDFDRCWLFFRGMLLQGINP 59

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
            +  +S  LSA +  + + +G+ I   I+ TG + + +V +AL  MYGK G   +A  +F
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            +M  RDVV+W+AM+  Y + G   E   LF ++   G+ PN  T    L+ACA      
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            G  +H  +   G        +ALV++Y KCG +E + + F  +   ++V+W+++ A YA
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           +N     A+     +   G  P+   FV VL AC     + +G +  H   +  G    +
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQG-RRIHERTQVLGGGLES 298

Query: 398 DHYA--CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           D Y    +V++ ++ G    A D+  K+    D  LW SL+     HG  + A    E +
Sbjct: 299 DVYVLTALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFERM 357

Query: 456 FEIEPENPATYVTMANI 472
             +E   P T +T  ++
Sbjct: 358 -RLEGLQP-TIITFTSV 372



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 42/352 (11%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +  Q+      P+     S +  C     L  G  +H  +++ G + GV +   L
Sbjct: 144 REALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTAL 203

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +++Y KCG I  A   F ++ E++V                                +W+
Sbjct: 204 VNLYGKCGRIEAAVEAFGQIVEKNV-------------------------------VAWS 232

Query: 128 AMISGYVRYNQPIEALD-LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH--GY 184
           A+ + Y R ++  +A+  L+RM  + E  V N  T  SVL A +AI  L+ G+ IH    
Sbjct: 233 AISAAYARNDRNRDAIRVLHRM--DLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQ 290

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           ++  G +SD  V +AL +MY KCG++  A  +FDK+   D+V W ++I    Q G+ E+ 
Sbjct: 291 VLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKA 350

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELG-KQVHGYMTRIGYDPYSFAASALVH 303
             LF  +   G++P   TF  VL AC+     + G K    ++   G  P +     +V 
Sbjct: 351 LELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVD 410

Query: 304 MYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
           +  + G + +S+ +   MP  P  V+W + +         D+A+   E L +
Sbjct: 411 LLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQ 462



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 127/276 (46%), Gaps = 9/276 (3%)

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y + G+I   R+ FD+M   D+VSW A+I  Y      +  +  F  ++  GI P     
Sbjct: 5   YSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGI 64

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
           +  L+AC D     +G+ +   +   G +  S   +ALV MY K G+  ++  VF  M  
Sbjct: 65  SIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSH 124

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V+W++++A YA+NG P +AL  F  +   G  P+ +  V  L AC   G +  G   
Sbjct: 125 RDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSG-AL 183

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H   E  G+         +V+L  + GR   A +   ++ ++ +   W+++      + 
Sbjct: 184 MHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAA---YA 239

Query: 444 NLDLAKRAAEALFEIEPE----NPATYVTMANIYAS 475
             D  + A   L  ++ E    N  T+V++ +  A+
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAA 275


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 274/518 (52%), Gaps = 72/518 (13%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           YSSLI      ++L   + VH+++  SGF    F+ + L+D Y KCG++++A+ LFDE+ 
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEM---------------------------PQR 121
            R + ++N+MIS     G  ++A   +  M                            QR
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQR 122

Query: 122 -------------DNFSWTAMISGYVRYNQPIEALDLYR--------------------- 147
                        D F  +A++  Y ++++  +A  ++R                     
Sbjct: 123 AHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHG 182

Query: 148 ----MMQNFENSVS-----NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
                ++ FE+ V+     N++TL+ +L     +  L  G+ IHG ++++G +S     +
Sbjct: 183 LDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQT 242

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
           +L  MY +C  I ++ ++F+++   + V+WT+ +    Q GR E   ++F E+I+  I P
Sbjct: 243 SLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISP 302

Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
           N FT + +L AC+  A  E+G+Q+H    ++G D   +A +AL+++Y KCGN++ ++ VF
Sbjct: 303 NPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVF 362

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
           + +   D+V+  S+I  YAQNG   +ALE FE L   G  P+ + F+ +L AC +AGLV+
Sbjct: 363 DVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVE 422

Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +G Q F SI+  H +  T DH+ C++DLL RS R  EA  +I ++   PD  LW +LL  
Sbjct: 423 EGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNS 481

Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           C+IHG +++A++    + E+ P +  T++ + N+YASA
Sbjct: 482 CKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASA 519



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 185/382 (48%), Gaps = 26/382 (6%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+     ++++A  +  ++      ++++LI    Q+    E  K+   + + G KP  
Sbjct: 144 VDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNE 203

Query: 62  FISNCLLDMYAKCGNISDAQT-------LFDEMQERDVCSYNTMISGFTKGGSLEQARNL 114
           +   C+L     CGN+ D          +     E  V S  ++++ +++   +E +  +
Sbjct: 204 YTLACIL---INCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKV 260

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQ 173
           F+++   +  +WT+ + G V+  +   A+ ++R M     S+S N FTLSS+L A S++ 
Sbjct: 261 FNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREM--IRCSISPNPFTLSSILQACSSLA 318

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            L +G++IH   M+ G D ++   +AL ++YGKCG++++AR +FD + + DVV+  +MI 
Sbjct: 319 MLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIY 378

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV-----HGYMTR 288
            Y Q G   E   LF  L   G+ PN  TF  +L AC +    E G Q+     + +   
Sbjct: 379 AYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIE 438

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG---MPDKA 345
           +  D +    + ++ +  +   +E +  +   +  PD+V W +L+     +G   M +K 
Sbjct: 439 LTIDHF----TCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHGEVEMAEKV 494

Query: 346 LEYFELLLKSGTQPDHIVFVGV 367
           +    L L  G    HI+   +
Sbjct: 495 MSKI-LELAPGDGGTHILLTNL 515


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 229/387 (59%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           ER++   N +I+ + K     Q R +FDEM +R+  +WTA+ISG  +     ++L L+  
Sbjct: 181 EREITVGNALITSYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQ 240

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+   +   N  T  S L A S +Q LR G++IHG + + G  SD  + SAL D+Y KCG
Sbjct: 241 MRCCGSVSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCG 300

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
           S++ A QIF+   + D VS T ++  + Q G  EE   +F++++  G+  +A   + VL 
Sbjct: 301 SLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLG 360

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
                    LGKQ+H  + +  +    F  + LV+MYSKCG++ +S  VF  M + + VS
Sbjct: 361 VFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVS 420

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W S+IA +A++G   KAL+++E +   G  P  + F+ +L AC+HAGLV+KG++   S+ 
Sbjct: 421 WNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMT 480

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             HG++  ++HYAC+VD+L R+G  +EA+  I  +P      +W +LLG C IHG+ ++ 
Sbjct: 481 NDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMG 540

Query: 449 KRAAEALFEIEPENPATYVTMANIYAS 475
           K AA+ LF   P +PA YV MANIY+S
Sbjct: 541 KYAADRLFSAAPASPAPYVLMANIYSS 567



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 202/422 (47%), Gaps = 33/422 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           +SL+  C ++R L  G  +H+ +     +P  F                     FD  Q 
Sbjct: 38  TSLLTLCGRDRNLTLGSSIHARIIK---QPPSFD--------------------FDGSQR 74

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
             +  +N+++S ++K G    A N+FD MP RD  SW  MISG++R      +   ++ M
Sbjct: 75  NALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQM 134

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLG------KEIHGYIMRTGFDSDEVVWSALSDM 203
               N V  +F  +++ + +S    LRLG      + IHG +   GF+ +  V +AL   
Sbjct: 135 TE-SNRVCCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITS 193

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFT 262
           Y KC   ++ R++FD+M++R+VV+WTA+I    Q    E+   LF+++   G + PN  T
Sbjct: 194 YFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLT 253

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           +   L AC+       G+++HG + ++G        SAL+ +YSKCG+++ + ++F    
Sbjct: 254 YLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAE 313

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             D VS T ++  +AQNG  ++A++ F  ++  G + D  +   VL        +  G Q
Sbjct: 314 ELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQ 373

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442
             HS+  K            +V++ ++ G   ++  V  +M  K +   W S++     H
Sbjct: 374 -IHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQK-NSVSWNSVIAAFARH 431

Query: 443 GN 444
           G+
Sbjct: 432 GD 433



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 148/319 (46%), Gaps = 34/319 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y S +  C   + L +G+K+H  L   G +  + I + L+D+Y+KCG++  A  +
Sbjct: 249 PNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQI 308

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+  +E D  S   ++  F + G  E+A  +F +M               V     ++A 
Sbjct: 309 FESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKM---------------VALGMEVDA- 352

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                     N V      S+VL        L LGK+IH  I++  F  +  V + L +M
Sbjct: 353 ----------NMV------SAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNM 396

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG ++++  +F +M  ++ VSW ++I  + + G   +    + E+   G+ P   TF
Sbjct: 397 YSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTF 456

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L+AC+     E G ++   MT   G  P S   + +V M  + G++  +KK   G+P
Sbjct: 457 LSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLP 516

Query: 323 R-PDLVSWTSLIAGYAQNG 340
               ++ W +L+   + +G
Sbjct: 517 EHGGVLVWQALLGACSIHG 535


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 269/473 (56%), Gaps = 10/473 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L +A QI H   + +   ++ LI    +N    E   V   +    FKP     + +L  
Sbjct: 72  LADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPA 131

Query: 71  YAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +A  G I  A+++         E +V     ++  ++K G +  AR LF+ M +R+  +W
Sbjct: 132 FANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTW 191

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            A++SGY  +    EA+DL+ +M+  +  + + +T+ S++ A  ++ CL++G  IHG+I+
Sbjct: 192 NAIVSGYSDHGFSEEAIDLFNLMRR-KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFII 250

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR-EEGF 245
           RTG+++D+ + +AL D+Y     +++A ++F +M  +DV +WT M+   F  GR  +   
Sbjct: 251 RTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTG-FSSGRHWDRAI 309

Query: 246 ALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             F++++    ++ ++    G+L++C+   A + G++VH    +  +    F  SA++ M
Sbjct: 310 KHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDM 369

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+ CGN+E++K+ F GM   D+V W ++IAG   NG    A++ F  +  SG  PD   F
Sbjct: 370 YANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTF 429

Query: 365 VGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           V VL AC+HAG+V +GLQ ++H +K  H +     HYAC++D+L R+G+   A   I+ M
Sbjct: 430 VSVLYACSHAGMVYEGLQIFYHMVKTSHVIP-NLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P +PD  ++++LLG CRIHGN+ L    ++ +FE+EP +   YV ++N+YA A
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALA 541



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 216/429 (50%), Gaps = 42/429 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q L  ++ P  SI        R+ + L+  +++H+ + +SG     F+SN L++ Y  CG
Sbjct: 18  QRLSPLAQPHASIL-------RKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCG 70

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            ++DA+ +F     ++V S+  +ISG  K     +A ++F EM                 
Sbjct: 71  LLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREM----------------- 113

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                       +M NF+    N  T+SSVL A + +  +R+ K +H + +R GF+ +  
Sbjct: 114 ------------IMGNFK---PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVF 158

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255
           V +AL DMY K G +  ARQ+F+ M +R+VV+W A++  Y   G  EE   LF+ + + G
Sbjct: 159 VETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKG 218

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           +  + +T   ++ A       ++G  +HG++ R GY+      +AL+ +Y     V+++ 
Sbjct: 219 LLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAH 278

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHA 374
           +VF+ M   D+ +WT ++ G++     D+A+++F  +L     + D I  +G+L++C+H+
Sbjct: 279 RVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHS 338

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           G + +G +  H++  K          + ++D+ A  G   +A+     M  K D   W +
Sbjct: 339 GALQQG-RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNA 396

Query: 435 LLGGCRIHG 443
           ++ G  ++G
Sbjct: 397 MIAGNGMNG 405


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/451 (32%), Positives = 239/451 (52%), Gaps = 32/451 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+      +++ C +   +  G K+HS L  +G+   VF+   LL +Y KC N  DA   
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL-- 169

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                         +FD++P ++  SWTA+I+GY+      EA+
Sbjct: 170 -----------------------------KVFDDIPDKNVVSWTAIITGYISSGHFREAI 200

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             ++ +        + F+L  VL+A + +     G+ I  YI  +G   +  V ++L DM
Sbjct: 201 GAFKKLLEM-GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDM 259

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG++  A  IF  M ++D+VSW+ MI  Y   G  ++   LF ++    ++P+ +T 
Sbjct: 260 YVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTM 319

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            GVL+ACA   A +LG      M R  +       +AL+ MYSKCG+V  + ++F  M +
Sbjct: 320 VGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKK 379

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D V W +++ G + NG        F L+ K G +PD   F+G+L  CTH G V++G Q+
Sbjct: 380 KDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQF 439

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F+++K    LT + +HY C+VDLL R+G  +EA  +I+ MPMKP+  +W +LLGGC++H 
Sbjct: 440 FNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHK 499

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +  LA++  + L E+EP N   YV ++NIY+
Sbjct: 500 DTHLAEQVLKKLIELEPWNSGNYVQLSNIYS 530



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           K IH  ++R   D D  + + +       GS N ++ +F ++ + ++  W  MI     +
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              ++   L+  +   G  PN FT   VL ACA      LG ++H  + + GYD   F  
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           ++L+ +Y KC N +++ KVF+ +P  ++VSWT++I GY  +G   +A+  F+ LL+ G +
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD    V VL AC   G    G ++        G+         ++D+  + G    A  
Sbjct: 213 PDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANL 271

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYASA 476
           + S MP K D   W++++ G   +G   L ++A +  F+++ EN  P  Y  +  + A A
Sbjct: 272 IFSAMPEK-DIVSWSTMIQGYAFNG---LPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327


>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
          Length = 671

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 251/452 (55%), Gaps = 33/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ + +S +++       L  GK+VH  L   G +    +   LL MY +CG +      
Sbjct: 207 PTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGM------ 260

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            DE+  R  C                          + D FS T++++ Y R    +EA+
Sbjct: 261 -DEIT-RLACRI------------------------RHDAFSRTSLLTAYARNGCNMEAV 294

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++R M      + ++  ++S+L   S++  LR+ KEIH Y ++  F  D ++ +A+  +
Sbjct: 295 RVFRDMLMGHMPI-DQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTV 353

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG I  +  +F+ + ++D +SWTA++  Y Q    +E    F E+++ G+  + F  
Sbjct: 354 YGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCI 413

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL AC+  ++   G Q+H  + ++G D  +   +ALV MY+KCG V+ + K+FN M  
Sbjct: 414 TSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRN 473

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             ++SW +LI  ++Q+G    A++ F+++ +    PD   FVG+L++C+  GLV +G +Y
Sbjct: 474 RGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEY 533

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +K K+ L    +HY C+VDL AR+GRF +A   I  MP +PD+ +W +LL  CR+HG
Sbjct: 534 FKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHG 593

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           NLDL + AA+ + EI+PE+P+ Y+ +++I+AS
Sbjct: 594 NLDLGRMAAKKILEIKPEDPSPYIILSSIHAS 625



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 173/365 (47%), Gaps = 13/365 (3%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR-MMQNFEN 154
           N ++  +   G L  AR +FDEMP+R+  SW+ +I+   R     +AL L+  M++  E 
Sbjct: 41  NNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGER 100

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
              N FT++++++  +  +    G+++H   ++ G D DE V   L DMY KCG +  + 
Sbjct: 101 DRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSW 160

Query: 215 QIFDKMVDRDVVSWTAMIG---RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           + F     R V+SWT+MI     +   G R+    LF +++   + P   TF+ +L    
Sbjct: 161 RAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFD 220

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                  GKQVHG + ++G +      +AL+ MY +CG ++   ++   + R D  S TS
Sbjct: 221 VPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRI-RHDAFSRTS 279

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           L+  YA+NG   +A+  F  +L      D      +L  C+  G + + ++  H    K+
Sbjct: 280 LLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQL-RVVKEIHCYALKN 338

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
                      IV +  + G    +E V + +  K D   W +LL  C +  +L     +
Sbjct: 339 FFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENK-DTISWTALL-TCYVQNDL-----S 391

Query: 452 AEALF 456
            EALF
Sbjct: 392 QEALF 396



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 198/441 (44%), Gaps = 42/441 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++L+  C + +    G++VH+     G      ++  L+DMYAKCG +      
Sbjct: 103 PNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRV------ 156

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP---I 140
                                 GS  +A   F   PQR   SWT+MI+  V +       
Sbjct: 157 ----------------------GSSWRA---FVLTPQRSVLSWTSMIACLVNHGDSGYRD 191

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            A+ L++ M   +   +N  T S +L      + L  GK++HG +++ G + D  + +AL
Sbjct: 192 TAIVLFKKMLVLKVWPTNA-TFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTAL 250

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MYG+CG ++E  ++  + +  D  S T+++  Y + G   E   +F +++   +  + 
Sbjct: 251 LAMYGRCGGMDEITRLACR-IRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQ 309

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
                +L  C+      + K++H Y  +  +   +   +A+V +Y KCG++ +S+ VFN 
Sbjct: 310 SAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNT 369

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           +   D +SWT+L+  Y QN +  +AL +F  +++ G +        VL AC+    +  G
Sbjct: 370 LENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCG 429

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            Q  HS   K G+         +V + A+ G    A  + + M  +     W +L+    
Sbjct: 430 WQ-IHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRNR-GIISWNALITSFS 487

Query: 441 IHGNLDLAKRAAEALFEIEPE 461
            HGN    + AA  LF++  E
Sbjct: 488 QHGN----EVAAIQLFDMMQE 504



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 8/263 (3%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           + +HG  ++ G  +   + + L   Y   G + +AR +FD+M  R+VVSW+ +I    + 
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRL 81

Query: 239 GRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           G   +  +LF+ +++ G   RPN+FT A ++  CA       G+QVH    ++G D    
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA---GYAQNGMPDKALEYFELLL 353
            A  LV MY+KCG V +S + F   P+  ++SWTS+IA    +  +G  D A+  F+ +L
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKML 201

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
                P +  F  +L       L+  G Q  H    K G          ++ +  R G  
Sbjct: 202 VLKVWPTNATFSCILKVFDVPELLPSGKQ-VHGCLVKMGTEVDPALGTALLAMYGRCGGM 260

Query: 414 HEAEDVISKMPMKPDKFLWASLL 436
            E   +  +  ++ D F   SLL
Sbjct: 261 DEITRLACR--IRHDAFSRTSLL 281


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/525 (30%), Positives = 263/525 (50%), Gaps = 77/525 (14%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y++ +  C +   L EGK VH+     G   GVF+SN L+ MYA+CG++  A+ +FD   
Sbjct: 117 YAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAAD 176

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---------------------------- 120
           ERD  S+N ++SG+ + G+ +    +F  M +                            
Sbjct: 177 ERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIA 236

Query: 121 -------------RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF------- 160
                         D F  +AM+  Y +     EA+ L++ + +    V N         
Sbjct: 237 AAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRD 296

Query: 161 -------TLSSVLSAVSAIQC----------------------LRLGKEIHGYIMRTGFD 191
                   L   LS  S +Q                       +  GK+IHG +++  F 
Sbjct: 297 EAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQ 356

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            D+ + SAL D+Y   G + +  + F  +  +DVV+WTAMI    Q    E    LF EL
Sbjct: 357 GDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHEL 416

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
           + +G++P+ FT + V+NACA  A    G+Q+  + T+ G+  ++   ++ +HMY++ G+V
Sbjct: 417 LGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDV 476

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
             + + F  M   D+VSW+++I+ +AQ+G    AL +F  ++ +   P+ I F+GVLTAC
Sbjct: 477 HAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTAC 536

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
           +H GLVD+GL+Y+ ++KE++ L+ T  H  C+VDLL R+GR  +AE  I       +  +
Sbjct: 537 SHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVI 596

Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           W SLL  CRIH +++  +  A+ + E++P + A+YV + NIY  A
Sbjct: 597 WRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDA 641



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 190/413 (46%), Gaps = 47/413 (11%)

Query: 37  RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96
           R   A      VH+H+  +   P +F+ N LL  Y + G                     
Sbjct: 25  RSCSAPRHAAAVHAHIVRAHPSPSLFLRNTLLAAYCRLGG-------------------- 64

Query: 97  TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
                         AR L DEMP+ +  S+  +I  Y R  QP  +L+ +   +      
Sbjct: 65  -------------HARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGVR 111

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           +++FT ++ L+A S    LR GK +H   +  G      V ++L  MY +CG + +ARQ+
Sbjct: 112 ADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQV 171

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA--DHA 274
           FD   +RD VSW A++  Y + G +++   +F+ + +SGI  N+F    V+  CA  D  
Sbjct: 172 FDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDP 231

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             ++   VHG + + G+D   F ASA+V MY+K G +  +  +F  +  P++V + ++IA
Sbjct: 232 VMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIA 291

Query: 335 GYAQN------GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           G  ++       +  +AL  +  +   G +P    F  V+ AC  AG ++ G Q  H   
Sbjct: 292 GLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQ-IHGQV 350

Query: 389 EKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
            KH   +  D +  + ++DL   SG   +     + +P K D   W +++ GC
Sbjct: 351 LKH--CFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVP-KQDVVTWTAMISGC 400



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 156/334 (46%), Gaps = 46/334 (13%)

Query: 11  LKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L+EAL +  ++      P+   +SS+I+ C     +E GK++H  +    F+   FI + 
Sbjct: 305 LREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSA 364

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           L+D+Y   G + D    F  + ++DV ++  MISG  +    E+A  LF E+        
Sbjct: 365 LIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHEL-------- 416

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             + +G     +P                  + FT+SSV++A +++   R G++I  +  
Sbjct: 417 --LGAGL----KP------------------DPFTISSVMNACASLAVARTGEQIQCFAT 452

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           ++GF     + ++   MY + G ++ A + F +M   D+VSW+A+I  + Q G   +   
Sbjct: 453 KSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALR 512

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMY 305
            F+E++ + + PN  TF GVL AC+     + G + +  M       P     + +V + 
Sbjct: 513 FFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLL 572

Query: 306 SKCGNVENSK-----KVFNGMPRPDLVSWTSLIA 334
            + G + +++      +F+  P    V W SL+A
Sbjct: 573 GRAGRLADAEAFIRDSIFHDEP----VIWRSLLA 602



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 20/208 (9%)

Query: 6   CNQRRLKE-ALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           C Q  L E AL + H++      P P   SS++  C        G+++      SGF   
Sbjct: 400 CVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRF 459

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
             + N  + MYA+ G++  A   F EM+  D+ S++ +IS   + G    A   F+EM  
Sbjct: 460 TAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVD 519

Query: 121 R----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL- 175
                +  ++  +++         E L  Y  M+        ++ LS  +   + +  L 
Sbjct: 520 AKVVPNEITFLGVLTACSHGGLVDEGLKYYETMK-------EEYALSPTIKHCTCVVDLL 572

Query: 176 -RLGK--EIHGYIMRTGFDSDEVVWSAL 200
            R G+  +   +I  + F  + V+W +L
Sbjct: 573 GRAGRLADAEAFIRDSIFHDEPVIWRSL 600



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 37/253 (14%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+  N   +++  +    +       ++++I  C QN   E    +   L  +G KP  
Sbjct: 366 IDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDP 425

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ--------ERDVCSYNTMISGFTKGGSLEQARN 113
           F  + +++    C +++ A+T  +++Q         R     N+ I  + + G +  A  
Sbjct: 426 FTISSVMN---ACASLAVART-GEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVR 481

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
            F EM   D  SW+A+IS + ++    +AL  +  M +    V N+ T   VL+A S   
Sbjct: 482 RFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVD-AKVVPNEITFLGVLTACS--- 537

Query: 174 CLRLGKEIHGYIMRTGFDSDEVV------------WSALSDMYGKCGSINEARQ-IFDKM 220
                   HG ++  G    E +             + + D+ G+ G + +A   I D +
Sbjct: 538 --------HGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSI 589

Query: 221 VDRDVVSWTAMIG 233
              + V W +++ 
Sbjct: 590 FHDEPVIWRSLLA 602



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 2   IDILCNQRRLKEALQILH-QISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           +D+L    RL +A   +   I H  P I+ SL+  CR +R +E G+ V   +     +P 
Sbjct: 569 VDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIME--LQPS 626

Query: 61  VFISNC-LLDMYAKCGNISDAQTLFDEMQERDV 92
              S   L ++Y   G +S A  + D M+ER V
Sbjct: 627 SSASYVNLYNIYLDAGELSLASKIRDVMKERGV 659


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 254/456 (55%), Gaps = 9/456 (1%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF-DEM 87
           ++SLI    QN   E+  +    ++ +G  P  F     L   A  G I   + +  D +
Sbjct: 456 WNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGL 515

Query: 88  Q---ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI-EAL 143
           +   + DV   N +++ + + G   +   +F  MP+ D  SW ++I         + +A+
Sbjct: 516 KLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAV 575

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
             +  M      +S + T  ++LSAVS++    +  +IH  +++     D  + +AL   
Sbjct: 576 KYFLQMMRGGWGLS-RVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSC 634

Query: 204 YGKCGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           YGKCG +NE  +IF +M + RD VSW +MI  Y       +   L   +++ G R ++FT
Sbjct: 635 YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFT 694

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
           FA +L+ACA  A  E G +VH    R   +      SALV MYSKCG ++ + + F  MP
Sbjct: 695 FATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMP 754

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382
             ++ SW S+I+GYA++G  +KAL+ F  ++  G  PDH+ FVGVL+AC+H G V++G +
Sbjct: 755 LRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFE 814

Query: 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG-CRI 441
           +F S+ E + L+   +H++C+VDLL R+G+  E  D I+ MPMKP+  +W ++LG  CR 
Sbjct: 815 HFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRA 874

Query: 442 HG-NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +G N +L +RAAE L E+EP+N   YV +AN+YAS 
Sbjct: 875 NGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASG 910



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 201/403 (49%), Gaps = 20/403 (4%)

Query: 57  FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER--------DVCSYNTMISGFTKGGSL 108
           FKP  +    L+     C ++     + ++M  R        D+   + ++SGF + G  
Sbjct: 276 FKPNEYTFGSLIT--TACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLT 333

Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
           + A+N+F++M  R+  S   ++ G V+  Q   A  ++  M++     S+ + +  +LSA
Sbjct: 334 DDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVV--LLSA 391

Query: 169 VSAIQCL----RLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDR 223
            S    L    R G+E+H +++RTG + ++V + + L +MY K G+I +A  +F+ MV++
Sbjct: 392 FSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEK 451

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           D VSW ++I    Q    E+    F  + ++G  P+ FT    L++CA      LG+Q+H
Sbjct: 452 DSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIH 511

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN-GMP 342
               ++G D     ++AL+ +Y++ G      KVF+ MP  D VSW S+I   + +    
Sbjct: 512 CDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASV 571

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
            +A++YF  +++ G     + F+ +L+A +   L +   Q  H++  K+ L+        
Sbjct: 572 SQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ-IHALVLKYCLSDDTAIGNA 630

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           ++    + G  +E E + ++M    D+  W S++ G  IH  L
Sbjct: 631 LLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG-YIHNEL 672



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 200/431 (46%), Gaps = 55/431 (12%)

Query: 25  SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84
           S   + SLI   + +   EE +++H      GF   +F+SN L+++Y + G+        
Sbjct: 70  SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGD-------- 121

Query: 85  DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALD 144
                                  L  A+ LFDEM  R+  +W  +ISGY +  +P EA  
Sbjct: 122 -----------------------LGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACA 158

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAV--SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            +R M      + N +   S L A   S     +LG +IHG I +T + SD VV + L  
Sbjct: 159 RFRDMVR-AGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLIS 217

Query: 203 MYGKC-GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI----R 257
           MYG C  S N+AR +FD +  R+ +SW ++I  Y + G     + LFS + K G+    +
Sbjct: 218 MYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFK 277

Query: 258 PNAFTFAGVL-NACADHAAEELG----KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           PN +TF  ++  AC   ++ + G    +Q+   + + G+    + +SALV  +++ G  +
Sbjct: 278 PNEYTFGSLITTAC---SSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTD 334

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTAC 371
           ++K +F  M   ++VS   L+ G  +    + A + F E+    G   D   +V +L+A 
Sbjct: 335 DAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDS--YVVLLSAF 392

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACI----VDLLARSGRFHEAEDVISKMPMKP 427
           +   ++++G +    +      T   D+   I    V++ A+SG   +A  V   M ++ 
Sbjct: 393 SEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEK 451

Query: 428 DKFLWASLLGG 438
           D   W SL+ G
Sbjct: 452 DSVSWNSLISG 462



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 142/281 (50%), Gaps = 14/281 (4%)

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           S+  T  S+++      C    +E+H   ++ GF  +  + + L ++Y + G +  A+++
Sbjct: 69  SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 128

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           FD+M +R++V+W  +I  Y Q G+ +E  A F +++++G  PN + F   L AC +    
Sbjct: 129 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPS 188

Query: 277 --ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN-SKKVFNGMPRPDLVSWTSLI 333
             +LG Q+HG +++  Y       + L+ MY  C +  N ++ VF+G+   + +SW S+I
Sbjct: 189 GCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSII 248

Query: 334 AGYAQNGMPDKALEYFELLLKSGT----QPDHIVFVGVL-TACTHAGLVDKGLQYFHSI- 387
           + Y++ G    A + F  + K G     +P+   F  ++ TAC+    VD GL     + 
Sbjct: 249 SVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSS---VDFGLCVLEQML 305

Query: 388 --KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
              EK G        + +V   AR G   +A+++  +M ++
Sbjct: 306 ARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVR 346


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 263/475 (55%), Gaps = 11/475 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           + +A  +   + +     ++S+I    QN+   E  K    ++ +   P  F     L  
Sbjct: 440 INDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSS 499

Query: 71  YAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
            A  G IS  + L  E      + DV   N +++ + + G +++ +  F  M   D+ SW
Sbjct: 500 CASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSW 559

Query: 127 TAMISGYVRYNQP--IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
            ++I G +  ++P  +EA++ + +M        N+ T  ++L+AVS++    LGK+IH  
Sbjct: 560 NSLI-GALADSEPSMLEAVESFLVMMR-AGWDPNRVTFITILAAVSSLSLHELGKQIHAL 617

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREE 243
           +++    +D  + +AL   YGKCG +     IF +M DR D VSW +MI  Y       +
Sbjct: 618 VLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPK 677

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              +   +++ G R + FTFA VL+ACA  A  E G +VHG   R   +      SALV 
Sbjct: 678 AMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVD 737

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+KCG ++ + + F  MP  +L SW S+I+GYA++G   K+L+ F  +   G  PDH+ 
Sbjct: 738 MYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVT 797

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           FVGVL+AC+HAGLV++G  +F S+ E +GL    +H++C+VDLL R G  ++ ED +++M
Sbjct: 798 FVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQM 857

Query: 424 PMKPDKFLWASLLGG-CRIHG-NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P+KP+  +W ++LG  CR +G N  L +RAAE L E+EP N   Y+ ++N+YAS 
Sbjct: 858 PVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASG 912



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 204/405 (50%), Gaps = 22/405 (5%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER--------DVCSYNTMISGFTKGGS 107
           G KP  +    L+   A C   +    L +++  R        D+   + ++SGF K GS
Sbjct: 277 GLKPNEYTFGSLIS--ATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGS 334

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           +  A+N+F +M  R+  S   +I G VR  +  EA++L+  M++      N + +  +L+
Sbjct: 335 IGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMI--ILT 392

Query: 168 AVSAIQCL----RLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVD 222
           A      L    R G E+H +++R+G  + ++ + + L +MY KCG+IN+A  +F  M +
Sbjct: 393 AFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDN 452

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           +D V+W +MI    Q  +  E    F E+ ++ + P+ FT    L++CA      +G+Q+
Sbjct: 453 KDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQL 512

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           H    ++G D     ++AL+ +Y +CG V+  +K F+ M   D VSW SLI   A +  P
Sbjct: 513 HCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALA-DSEP 571

Query: 343 D--KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400
              +A+E F +++++G  P+ + F+ +L A +   L + G Q  H++  K  +       
Sbjct: 572 SMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ-IHALVLKRNVAADTAIE 630

Query: 401 ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
             ++    + G     E++ S+M  + D+  W S++ G  IH  L
Sbjct: 631 NALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISG-YIHNEL 674



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 195/427 (45%), Gaps = 20/427 (4%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS-----DAQTL 83
           +S LI    +NR   E  ++   + S GF P  +    ++    +CG            L
Sbjct: 142 WSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGL 201

Query: 84  FDEMQ-ERDVCSYNTMISGFTKG-GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
             + Q   DV + N +IS +    G ++ AR  FD +  R+  S  +MIS Y +    + 
Sbjct: 202 MSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVS 261

Query: 142 ALDLYRMMQN---FENSVSNKFTLSSVLSAVSAI--QCLRLGKEIHGYIMRTGFDSDEVV 196
           A D++  MQ     +    N++T  S++SA  ++    L L +++   + ++GF  D  V
Sbjct: 262 AFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYV 321

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            SAL   + K GSI  A+ IF KM  R+VVS   +I    ++ R EE   LF E+ K  +
Sbjct: 322 GSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSV 380

Query: 257 RPNAFTFAGVLNACADHAAEELGK----QVHGYMTRIGYDPYSFA-ASALVHMYSKCGNV 311
             N  ++  +L A  +    E GK    +VH ++ R G      A  + L++MY+KCG +
Sbjct: 381 ELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAI 440

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
            ++  VF  M   D V+W S+I G  QN    +A++ F+ + ++   P +   +  L++C
Sbjct: 441 NDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSC 500

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
              G +  G Q  H    K GL         ++ L    G   E +   S M +  D   
Sbjct: 501 ASLGWISVGEQ-LHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVS 558

Query: 432 WASLLGG 438
           W SL+G 
Sbjct: 559 WNSLIGA 565



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 209/440 (47%), Gaps = 57/440 (12%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL Q  R +   ++ +++H  L  +GF   +F+ N L+++YA+ G+              
Sbjct: 78  SLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGD-------------- 123

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                            L   R +FDEMP R+  SW+ +ISGY R   P EA +L+R M 
Sbjct: 124 -----------------LGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMV 166

Query: 151 NFENSVSNKFTLSSVLSAVSAIQC----LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           + +  + N +   SV+ A    +C    L+ G +IHG + +T + +D    + L  MYG 
Sbjct: 167 S-DGFMPNHYAFGSVIRACQ--ECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGN 223

Query: 207 C-GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS----ELIKSGIRPNAF 261
             G ++ AR+ FD +  R++VS  +MI  Y Q G     F +FS    E++  G++PN +
Sbjct: 224 ALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEY 283

Query: 262 TFAGVLNACADHAAEELG--KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           TF  +++A    A   L   +Q+   + + G+    +  SALV  ++K G++  +K +F 
Sbjct: 284 TFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQ 343

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   ++VS   LI G  +    ++A+E F + +K   + +   ++ +LTA     +++ 
Sbjct: 344 KMSYRNVVSLNGLIIGLVRQKRGEEAVELF-MEMKDSVELNPNSYMIILTAFPEFHVLEN 402

Query: 380 GLQY---FHSIKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
           G +     H+   + GL          ++++ A+ G  ++A  V   M  K D   W S+
Sbjct: 403 GKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNK-DSVTWNSM 461

Query: 436 LGGCRIHGNLDLAKRAAEAL 455
           + G      LD  K+  EA+
Sbjct: 462 ITG------LDQNKQFLEAV 475



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 166/349 (47%), Gaps = 20/349 (5%)

Query: 139 PIEAL-DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW 197
           P++ L DLY+  Q   N V +   + S+          +  +E+H  + + GF +D  + 
Sbjct: 52  PLQVLVDLYKSSQLHHNPVQHDEKIESLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLC 111

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR 257
           + L ++Y + G +   R++FD+M  R++VSW+ +I  Y +     E   LF +++  G  
Sbjct: 112 NTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFM 171

Query: 258 PNAFTFAGVLNACAD--HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-GNVENS 314
           PN + F  V+ AC +      + G Q+HG M++  Y     A++ L+ MY    G V+ +
Sbjct: 172 PNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYA 231

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS----GTQPDHIVFVGVLTA 370
           ++ F+ +   +LVS  S+I+ Y Q G    A + F  + K     G +P+   F  +++A
Sbjct: 232 RRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISA 291

Query: 371 -CT--HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
            C+  ++GLV   L+   +  EK G  +     + +V   A++G    A+++  KM  + 
Sbjct: 292 TCSLANSGLVL--LEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRN 349

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE---NPATYVTMANIY 473
              L   ++G  R        + A E   E++     NP +Y+ +   +
Sbjct: 350 VVSLNGLIIGLVR----QKRGEEAVELFMEMKDSVELNPNSYMIILTAF 394


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 251/470 (53%), Gaps = 37/470 (7%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL +  ++ +    P+     S++  C     L+ GK +H     +     +     L
Sbjct: 412 EEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTAL 471

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           + MYAKCG  + A T                                F+ M  RD  +W 
Sbjct: 472 VSMYAKCGFFTAALTT-------------------------------FNRMSSRDIVTWN 500

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           ++I+GY +   P  A+D++  ++       +  T+  V+ A + +  L  G  IHG I++
Sbjct: 501 SLINGYAQIGDPYNAIDMFYKLR-LSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK 559

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFA 246
            GF+SD  V +AL DMY KCGS+  A  +F+K    +D V+W  +I  Y Q G  +E  +
Sbjct: 560 LGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAIS 619

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
            F ++      PN+ TF  VL A A  AA   G   H  + ++G+   +   ++L+ MY+
Sbjct: 620 SFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYA 679

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG ++ S+K+FN M   D VSW ++++GYA +G  D+A+  F L+ +S  Q D + FV 
Sbjct: 680 KCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVS 739

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC HAGLV++G + FHS+ +K+ +    +HYAC+VDLL R+G F E    I  MP++
Sbjct: 740 VLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVE 799

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           PD  +W +LLG CR+H N+ L + A + L ++EP NPA +V +++IYA +
Sbjct: 800 PDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 849



 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 228/466 (48%), Gaps = 13/466 (2%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      LK A ++  ++       ++++I    Q+    E       ++  G +P  
Sbjct: 171 VDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS- 229

Query: 62  FISNCLLDMY---AKCGNISDAQTLFDEMQERDVCSY--NTMISGFTKGGSLEQARNLFD 116
             S  LL+++    K  NI   +++   +  RD  S   N +I  ++K G ++ AR +FD
Sbjct: 230 --SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFD 287

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
           +M  +D+ SW  M++GY      +E L+L+  M+     ++    +S+ L+A   I  L 
Sbjct: 288 QMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETID-LE 346

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            GKEIHG  ++   DSD +V + L  MY KCG   +A+Q+F  +  RD+V+W+A+I    
Sbjct: 347 KGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           Q G  EE  +LF E+    ++PN  T   +L ACAD +  +LGK +H +  +   D    
Sbjct: 407 QTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLS 466

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
             +ALV MY+KCG    +   FN M   D+V+W SLI GYAQ G P  A++ F  L  S 
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
             PD    VGV+ AC     +D+G    H +  K G          ++D+ A+ G    A
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSA 585

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           E + +K     D+  W  ++     +G+   AK A  +  ++  EN
Sbjct: 586 EFLFNKTDFTKDEVTWNVIIAAYMQNGH---AKEAISSFHQMRLEN 628



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 46/377 (12%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           AR++FD  P      W +MI  Y R  Q  EAL++Y  M   +    +K+T + VL A +
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE-KGLEPDKYTFTFVLKACT 140

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
               L+ G   HG I R G + D  + + L DMY K G +  AR++FDKM  RDVV+W A
Sbjct: 141 GALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNA 200

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI    Q     E    F  +   G+ P++ +   +       +  EL + +HGY+ R  
Sbjct: 201 MIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR-- 258

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
            D  S  ++ L+ +YSKCG+V+ +++VF+ M   D VSW +++AGYA NG   + LE F+
Sbjct: 259 RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFD 318

Query: 351 LL-----------------------------------LKSGTQPDHIVFVGVLTACTHAG 375
            +                                   L+     D +V   ++      G
Sbjct: 319 KMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCG 378

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM---PMKPDKFLW 432
             +K  Q F  ++ +  + ++A     I+  L ++G   EA  +  +M    MKP++   
Sbjct: 379 ETEKAKQLFWGLQGRDLVAWSA-----IIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433

Query: 433 ASLLGGCRIHGNLDLAK 449
            S+L  C     L L K
Sbjct: 434 MSILPACADLSLLKLGK 450



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 180/410 (43%), Gaps = 84/410 (20%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P       ++  C     L++G  +H  +   GF+    + N L+DMYAKC        
Sbjct: 528 NPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKC-------- 579

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP-QRDNFSWTAMISGYVRYNQPIE 141
                                  GSL  A  LF++    +D  +W  +I+ Y++     E
Sbjct: 580 -----------------------GSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKE 616

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A+  +  M+  EN   N  T  SVL A + +   R G   H  I++ GF S+ +V ++L 
Sbjct: 617 AISSFHQMR-LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLI 675

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           DMY KCG ++ + ++F++M  +D VSW AM+  Y   G  +   ALFS + +S ++ ++ 
Sbjct: 676 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           +F  VL+AC  HA                                  G VE  +K+F+ M
Sbjct: 736 SFVSVLSACR-HA----------------------------------GLVEEGRKIFHSM 760

Query: 322 P-----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC---TH 373
                 +PDL  +  ++    + G+ D+ L + +++     +PD  V+  +L +C   ++
Sbjct: 761 SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVM---PVEPDAGVWGALLGSCRMHSN 817

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
             L +  L +   ++ ++       H+  +  + A+SGR+ +A    SKM
Sbjct: 818 VKLGEVALDHLVKLEPRN-----PAHFVVLSSIYAQSGRWADAGKARSKM 862



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 127/263 (48%), Gaps = 13/263 (4%)

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
           +IH  I+ +GF     + + L ++Y      + AR +FD   +   + W +MI  Y +  
Sbjct: 50  QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108

Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           +  E   ++  +++ G+ P+ +TF  VL AC      + G   HG + R G +   F  +
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGA 168

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
            LV MYSK G+++ +++VF+ MP+ D+V+W ++IAG +Q+  P +A+++F  +   G +P
Sbjct: 169 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI----VDLLARSGRFHE 415
             +  + +             L      +  HG  +  D  + +    +DL ++ G    
Sbjct: 229 SSVSLLNLFPGICK-------LSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDV 281

Query: 416 AEDVISKMPMKPDKFLWASLLGG 438
           A  V  +M +  D   W +++ G
Sbjct: 282 ARRVFDQM-VDQDDVSWGTMMAG 303



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 117/265 (44%), Gaps = 30/265 (11%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEA+   HQ+     HP+   + S++       A  EG   H+ +   GF     + N L
Sbjct: 615 KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL 674

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDN 123
           +DMYAKCG +  ++ LF+EM  +D  S+N M+SG+   G  ++A  LF  M     Q D+
Sbjct: 675 IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 734

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK---- 179
            S+ +++S         E   ++       +S+S+K+ +   L   + +  L LG+    
Sbjct: 735 VSFVSVLSACRHAGLVEEGRKIF-------HSMSDKYHIKPDLEHYACMVDL-LGRAGLF 786

Query: 180 -EIHGYIMRTGFDSDEVVWSALSDMYGKC---GSINEARQIFDKMVD---RDVVSWTAMI 232
            E  G+I     + D  VW AL    G C    ++       D +V    R+   +  + 
Sbjct: 787 DETLGFIKVMPVEPDAGVWGAL---LGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLS 843

Query: 233 GRYFQEGRREEGFALFSELIKSGIR 257
             Y Q GR  +     S++   G++
Sbjct: 844 SIYAQSGRWADAGKARSKMNDLGLK 868


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 253/484 (52%), Gaps = 64/484 (13%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           +P+   +  LI+   +  +L  G+ +H     S     VF++N L+  Y  CG+      
Sbjct: 128 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGD------ 181

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                    L+ A  +F  + ++D  SW +MI+G+V+   P +A
Sbjct: 182 -------------------------LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           L+L++ M++ E+  ++  T+  VLSA + I+ L  G+++  YI     + +  + +A+ D
Sbjct: 217 LELFKKMES-EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLD 275

Query: 203 MYGKCGSINEARQIFDKMVDRD-------------------------------VVSWTAM 231
           MY KCGSI +A+++FD M ++D                               +V+W A+
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335

Query: 232 IGRYFQEGRREEGFALFSEL-IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           I  Y Q G+  E   +F EL ++  ++ N  T    L+ACA   A ELG+ +H Y+ + G
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                   SAL+HMYSKCG++E S++VFN + + D+  W+++I G A +G  ++A++ F 
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455

Query: 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410
            + ++  +P+ + F  V  AC+H GLVD+    FH ++  +G+     HYACIVD+L RS
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   +A   I  MP+ P   +W +LLG C+IH NL+LA+ A   L E+EP N   +V ++
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575

Query: 471 NIYA 474
           NIYA
Sbjct: 576 NIYA 579



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 212/410 (51%), Gaps = 38/410 (9%)

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           ++  +   SLE AR +FDE+P+ ++F+W  +I  Y     P+ ++  +  M +      N
Sbjct: 71  MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           K+T   ++ A + +  L LG+ +HG  +++   SD  V ++L   Y  CG ++ A ++F 
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            + ++DVVSW +MI  + Q+G  ++   LF ++    ++ +  T  GVL+ACA     E 
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF-------------------- 318
           G+QV  Y+     +     A+A++ MY+KCG++E++K++F                    
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310

Query: 319 -----------NGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVG 366
                      N MP+ D+V+W +LI+ Y QNG P++AL  F EL L+   + + I  V 
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
            L+AC   G ++ G ++ HS  +KHG+       + ++ + ++ G   ++ +V + +  K
Sbjct: 371 TLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-K 428

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN-PATYVTMANIYAS 475
            D F+W++++GG  +HG       A +  ++++  N     VT  N++ +
Sbjct: 429 RDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 144/293 (49%), Gaps = 5/293 (1%)

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM--YGKCGSINEARQIFDKMVDR 223
           +S +     LR  K+ HG+++RTG  SD    S L  M       S+  AR++FD++   
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           +  +W  +I  Y            F +++ +S   PN +TF  ++ A A+ ++  LG+ +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           HG   +       F A++L+H Y  CG+++++ KVF  +   D+VSW S+I G+ Q G P
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
           DKALE F+ +     +  H+  VGVL+AC     ++ G Q    I+E   +         
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR-VNVNLTLANA 272

Query: 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
           ++D+  + G   +A+ +   M  K D   W ++L G  I  + + A+    ++
Sbjct: 273 MLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGYAISEDYEAAREVLNSM 324



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 21/206 (10%)

Query: 280 KQVHGYMTRIGY--DPYS----FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           KQ HG+M R G   DPYS    FA +AL    S   ++E ++KVF+ +P+P+  +W +LI
Sbjct: 47  KQTHGHMIRTGTFSDPYSASKLFAMAAL----SSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 334 AGYAQNGMPDKALE---YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
             YA    PD  L    + +++ +S   P+   F  ++ A      +  G Q  H +  K
Sbjct: 103 RAYASG--PDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLG-QSLHGMAVK 159

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
             +         ++      G    A  V + +  K D   W S++ G    G+ D   +
Sbjct: 160 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK-DVVSWNSMINGFVQKGSPD---K 215

Query: 451 AAEALFEIEPEN-PATYVTMANIYAS 475
           A E   ++E E+  A++VTM  + ++
Sbjct: 216 ALELFKKMESEDVKASHVTMVGVLSA 241


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 164/495 (33%), Positives = 256/495 (51%), Gaps = 65/495 (13%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
            +L++   P    Y S+++ C ++     G +VH  +++S  +  +F+ N L+ MY + G
Sbjct: 172 NMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFG 231

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                                           LE AR+LFD MP+RD+ SW  +IS Y  
Sbjct: 232 K-------------------------------LEIARHLFDNMPRRDSVSWNTIISCYAS 260

Query: 136 YNQPIEALDLYRMMQ----------------------NFENSVS-----------NKFTL 162
                EA  L+  MQ                      NF  ++            +   +
Sbjct: 261 RGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAM 320

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
              L+A S I  ++LGKEIHG+ +RT FD  + V +AL  MY +C  +  A  +F +  +
Sbjct: 321 VVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEE 380

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           + +++W AM+  Y    R EE   LF E+++ G+ PN  T A VL  CA  A  + GK+ 
Sbjct: 381 KGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEF 440

Query: 283 HGY-MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           H Y M    ++ Y    +ALV MYS+ G V  ++KVF+ + + D V++TS+I GY   G 
Sbjct: 441 HCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGE 500

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
            +  L+ FE + K   +PDH+  V VLTAC+H+GLV +G   F  + + HG+    +HYA
Sbjct: 501 GETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYA 560

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C+ DL  R+G  ++A++ I+ MP KP   +WA+LLG CRIHGN ++ + AA  L E++P+
Sbjct: 561 CMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKPD 620

Query: 462 NPATYVTMANIYASA 476
           +   YV +AN+YA+A
Sbjct: 621 HSGYYVLIANMYAAA 635



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/507 (23%), Positives = 215/507 (42%), Gaps = 79/507 (15%)

Query: 11  LKEALQILHQISHPSPSIY------SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           L  A +   QI H + S +       SL+  C   ++L +GK++H+ + S G      + 
Sbjct: 60  LTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILV 119

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           + L++ Y     + DAQ + +     D   +N +IS + + G                  
Sbjct: 120 SRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFF---------------- 163

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                          +EAL +Y+ M N +    +++T  SVL A         G E+H  
Sbjct: 164 ---------------VEALCVYKNMLN-KKIEPDEYTYPSVLKACGESLDFNSGLEVHRS 207

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
           I  +  +    V +AL  MYG+ G +  AR +FD M  RD VSW  +I  Y   G  +E 
Sbjct: 208 IEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEA 267

Query: 245 FALFSELIKSGIRPNAFTFAGV----------------------------------LNAC 270
           F LF  + + G+  N   +  +                                  LNAC
Sbjct: 268 FQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNAC 327

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +   A +LGK++HG+  R  +D +    +AL+ MYS+C ++ ++  +F+      L++W 
Sbjct: 328 SHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWN 387

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++++GYA     ++    F  +L+ G +P+++    VL  C     +  G ++   I + 
Sbjct: 388 AMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKH 447

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
                    +  +VD+ +RSGR  EA  V   +  K D+  + S++ G  + G  +   +
Sbjct: 448 KQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLT-KRDEVTYTSMILGYGMKGEGETTLK 506

Query: 451 AAEAL--FEIEPENPATYVTMANIYAS 475
             E +   EI+P+    +VTM  +  +
Sbjct: 507 LFEEMCKLEIKPD----HVTMVAVLTA 529


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/424 (37%), Positives = 244/424 (57%), Gaps = 38/424 (8%)

Query: 56  GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLF 115
           GF   +F+++ L DMY+KCG +S+A            C                    +F
Sbjct: 152 GFDTELFVASNLADMYSKCGLLSEA------------C-------------------RVF 180

Query: 116 DEMPQRDNFSWTAMISGYVRYNQPIEALDL-YRMMQNFENSVSNKFTLSSVLSAVSAIQC 174
           D+MPQ+D  +WTAMI GY + N  +EA  L +R M+      +++    SVLSA   ++ 
Sbjct: 181 DQMPQKDAVAWTAMIDGYAK-NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKD 239

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAM 231
             L K IH  + + GF+ +  V +AL DMY K   +  A ++    +D    +VVS T+M
Sbjct: 240 GWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLK--IDPGGWNVVSGTSM 297

Query: 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY 291
           I  Y +    EE   ++ EL + G+ PN FTF+ ++  CA  A  E G Q+H  + +   
Sbjct: 298 IDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDL 357

Query: 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351
              SF  S LV MY KCG +  S ++FN +     ++W ++I  +AQ+G   +A++ F+ 
Sbjct: 358 IRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDR 417

Query: 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411
           ++ SG +P+HI FV +LTAC+HAGLVD+GL+YF+S+KE HG+    +HY+CI+D   R+G
Sbjct: 418 MIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAG 477

Query: 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471
           R  EA   IS+MP+KP+ + W SLLG CR+ G+ +L + AA+ L ++EP N   +V+++ 
Sbjct: 478 RLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSG 537

Query: 472 IYAS 475
           IYAS
Sbjct: 538 IYAS 541



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 199/418 (47%), Gaps = 37/418 (8%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SL+Q C +   L  G+ +H+ L  SG      F++N L+ MY+ C +            
Sbjct: 24  ASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCAD------------ 71

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
                              L  A  LF  MP+R+  SWT ++SG  +     +AL  +  
Sbjct: 72  -------------------LASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAA 112

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
           M+        +F LSS   A +A+     G ++H   +R GFD++  V S L+DMY KCG
Sbjct: 113 MRR-AGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCG 171

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVL 267
            ++EA ++FD+M  +D V+WTAMI  Y + G  E     F ++ + G +  +   F  VL
Sbjct: 172 LLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVL 231

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-DL 326
           +A        L K +H  +T+ G++      +AL+ MY+K  +VE++ +V    P   ++
Sbjct: 232 SASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNV 291

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           VS TS+I GY +    ++AL  +  L + G +P+   F  ++  C    L+++G Q  H+
Sbjct: 292 VSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHA 350

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
              K  L   +   + +VD+  + G    +  + +++  + D   W +++     HG+
Sbjct: 351 QVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAVINVFAQHGH 407



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 10/288 (3%)

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKM 220
           L+S+L +      LR G+ +H  ++ +G  +    + + L  MY  C  +  A ++F  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             R+ VSWT ++    Q     +  A F+ + ++G+ P  F  +    A A   A   G 
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGA 142

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNG 340
           Q+H    R+G+D   F AS L  MYSKCG +  + +VF+ MP+ D V+WT++I GYA+NG
Sbjct: 143 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 202

Query: 341 MPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGL-QYFHSIKEKHGLTYTAD 398
             + A+  F  + + G    D  VF  VL+A    GL D  L +  H    K G      
Sbjct: 203 SLEAAVLSFRDMKREGLVGADQHVFCSVLSA--SGGLKDGWLSKSIHCCVTKAGFELEVA 260

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
               ++D+ A+S     A  V     +K D   W  + G   I G ++
Sbjct: 261 VRNALIDMYAKSMDVESASRV-----LKIDPGGWNVVSGTSMIDGYIE 303



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 36/255 (14%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           I+  C +  L   +++  Q   P+   +SS+I+ C     LE+G ++H+ +  +      
Sbjct: 302 IETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDS 361

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           F+ + L+DMY KCG IS +  LF+E++ R   ++N +I+ F + G   +A   FD M   
Sbjct: 362 FVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM--- 418

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                  + SG     +P                  N     S+L+A S    +  G + 
Sbjct: 419 -------IYSGI----RP------------------NHIAFVSLLTACSHAGLVDEGLK- 448

Query: 182 HGYIMRT--GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQE 238
           + Y M+   G +  E  +S + D YG+ G ++EA +   +M +  +   W +++G     
Sbjct: 449 YFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMR 508

Query: 239 GRREEGFALFSELIK 253
           G +E G      L+K
Sbjct: 509 GSKELGEVAAQNLMK 523


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 253/467 (54%), Gaps = 35/467 (7%)

Query: 11  LKEALQILHQISHPSPS-IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           ++EA+ +L Q      +     LI+ C   +ALEEG+++H  + S       F+SN L+D
Sbjct: 25  IREAVDLLEQSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVD 84

Query: 70  MYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129
           MY KCG                               SL +A+ +FD M  ++ FSWT +
Sbjct: 85  MYGKCG-------------------------------SLVEAKRVFDAMQHKNVFSWTML 113

Query: 130 ISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           ++G+V+  + +EA+ L+ RM Q  E  + ++  L   + +  A + L  G+EIH      
Sbjct: 114 MAGFVQSGRGVEAIQLFHRMCQ--EGELPDRVALLKFIDSCGAAKALSQGREIHSAAASC 171

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G DSD V  +A+ +MYGKCGSI EA  +F +M +++V+SW+ MI  + Q    +E    F
Sbjct: 172 GMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFF 231

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
             + + G+  +  T+  VL+A     A ELGK +H  +   G D      + LV+MY KC
Sbjct: 232 KLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKC 291

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G+ ++++ VF+ M   ++VSW +++A Y QNG   +AL  F+ +   G +P+ I FV +L
Sbjct: 292 GSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTIL 351

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
             C+H+G     + +F  +++  G+T    H+ C++D+L RSG+  EAE++I  MP+  D
Sbjct: 352 YCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPAD 411

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
             LW SLL  C  H + D A RAAE  F+ EP   A Y+ ++N+YA+
Sbjct: 412 AVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAA 458


>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
          Length = 464

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 233/395 (58%), Gaps = 3/395 (0%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +  L++ C +++A  EG+++H H+   G+   +++   L+ MYA+ G + DA  +
Sbjct: 71  PNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKV 130

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD    R V SY  +I+G+   G  + AR LFDE+  +D  SW AMISGYV      EAL
Sbjct: 131 FDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEAL 190

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
           +LY+ M    N   ++ T+ +V+SA +    + LG+++H  I   GF S+  V +AL DM
Sbjct: 191 ELYKEMVK-TNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDM 249

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  A ++F  +V++D +SW  +IG +      +E   LF E+++SG  PN  T 
Sbjct: 250 YSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTM 309

Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
             VL+ACA   A ++G+ +H Y+ +   G    S   ++L+ MY+KCG++E + +VF+ M
Sbjct: 310 LSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSM 369

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
               L SW ++I G+A +G  + A + F  + KSG +PD I FVG+L+AC+H+G++D G 
Sbjct: 370 LARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHSGMLDLGR 429

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
             F S+ + + +T   +HY C++DLL +   F EA
Sbjct: 430 HIFSSMTQDYKITPKLEHYGCMIDLLGQCALFKEA 464



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 197/394 (50%), Gaps = 46/394 (11%)

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L  A ++F+ + + +   W  M  G+   +  + AL LY  M +    + N ++   +L 
Sbjct: 23  LPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISL-GLLPNSYSFPFLLK 81

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA-------------- 213
           + +  +  R G++IHG++++ G+D D  V ++L  MY + G + +A              
Sbjct: 82  SCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 141

Query: 214 -----------------RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
                            R++FD+++ +D+VSW AMI  Y +    +E   L+ E++K+ +
Sbjct: 142 YTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNV 201

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           +P+  T   V++ACA  +  ELG+QVH  +   G+       +AL+ MYSKCG +E + +
Sbjct: 202 KPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACR 261

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           +F G+   D +SW +LI G+    +  +AL  F+ +L+SG  P+ +  + VL+AC H G 
Sbjct: 262 LFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGA 321

Query: 377 VDKGLQYFHSIKEKH--GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
           +D G ++ H   +K   G+T ++     ++D+ A+ G    A  V   M  +     W +
Sbjct: 322 IDIG-RWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSS-WNA 379

Query: 435 LLGGCRIHGNLDLAKRAAEALFE------IEPEN 462
           ++ G  +HG  +    AA  LF       IEP++
Sbjct: 380 MIFGFAMHGKAN----AAFDLFSKMRKSGIEPDD 409


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/355 (41%), Positives = 210/355 (59%), Gaps = 38/355 (10%)

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWSALSDMYGKCGSINEARQI 216
           ++ TLSSV+SA + +   R G+++H +++ R     D V+ +AL DMY KCG   EAR I
Sbjct: 9   DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 68

Query: 217 FD-------------------------------KMVDRDVVSWTAMIGRYFQEGRREEGF 245
           FD                               +MV+++V++W  +I  Y Q G  EE  
Sbjct: 69  FDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAI 128

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY----DPYS--FAAS 299
            LF +L +  I P  +T+  VLNAC + A  +LG+Q H ++ + G+     P S  F  +
Sbjct: 129 RLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGN 188

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
           +LV MY K G++++  KVF  M   D VSW ++I GYAQNG    AL  FE +L S   P
Sbjct: 189 SLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENP 248

Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
           D +  +GVL+AC H+GLVD+G ++FH + E HG+T + DHY C+VDLL R+G   EAE++
Sbjct: 249 DSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEEL 308

Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           I  MP +PD  LWASLLG CR+H N++L +R A  LFE++PEN   YV ++N+YA
Sbjct: 309 IKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYA 363



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 180/321 (56%), Gaps = 10/321 (3%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           P     SS++  C    A  EG++VH+H+ K    +  + ++N L+DMYAKCG   +A+ 
Sbjct: 8   PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARC 67

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD M  R V S  ++++G+ K  ++E A+ +F +M +++  +W  +I+ Y +  +  EA
Sbjct: 68  IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 127

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF------DSDEVV 196
           + L+  ++  ++     +T  +VL+A   I  L+LG++ H ++++ GF      +SD  V
Sbjct: 128 IRLFVQLKR-DSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFV 186

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L DMY K GSI++  ++F++M  RD VSW AMI  Y Q GR ++   LF  ++ S  
Sbjct: 187 GNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE 246

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSK 315
            P++ T  GVL+AC      + G++   +MT   G  P     + +V +  + G+++ ++
Sbjct: 247 NPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 306

Query: 316 KVFNGMP-RPDLVSWTSLIAG 335
           ++   MP  PD V W SL+  
Sbjct: 307 ELIKDMPTEPDSVLWASLLGA 327



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 120/267 (44%), Gaps = 50/267 (18%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCG 309
           ++ +G  P+  T + V++ACA  AAE  G+QVH +M  R          +ALV MY+KCG
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 310 -------------------------------NVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
                                          NVE+++ VF+ M   ++++W  LIA YAQ
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTA 397
           NG  ++A+  F  L +    P H  +  VL AC +  ++  G Q + H +KE     +  
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180

Query: 398 DHYA----CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAE 453
           +        +VD+  ++G   +   V  +M  + D   W +++ G   +G      RA +
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAAR-DNVSWNAMIVGYAQNG------RAKD 233

Query: 454 ALFEIE-----PENPATYVTMANIYAS 475
           AL   E      ENP + VTM  + ++
Sbjct: 234 ALHLFERMLCSNENPDS-VTMIGVLSA 259


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 242/410 (59%), Gaps = 32/410 (7%)

Query: 97  TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
            ++S + K   L  A +LFDE P+RD + ++++++       P  AL + R M + +   
Sbjct: 19  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALH 78

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            + F +SSV S  + ++  RLG+++H + + + ++ D+VV S+L DMY KCGS ++ R++
Sbjct: 79  PDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKV 138

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS--------------------------- 249
           FD M  ++ V WTA++  Y   GR EE   LF                            
Sbjct: 139 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAV 198

Query: 250 ----ELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
               E+ + G+R  +AF  + V+ A AD AA  LG+Q+HG   R+G+       +AL+ M
Sbjct: 199 ELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDM 258

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YSKC ++ ++++VF G+   D++SWT+++ G AQ+G  ++AL  ++ ++ +G +P+ + F
Sbjct: 259 YSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTF 318

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VG++ AC+HAGLV KG Q F S+K ++G+T    HY C +DLL+RSG   EAE++++ MP
Sbjct: 319 VGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMP 378

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +PD+  W +LL  C  + + ++  R ++ L E+ P++ +TY+ ++N+YA
Sbjct: 379 YEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYA 428



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 176/315 (55%), Gaps = 2/315 (0%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HP   + SS+     + R+   G+++H+H  +S +     + + L+DMY KCG+  D + 
Sbjct: 78  HPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRK 137

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD M  ++   +  ++SG+   G  E+A  LF  MP R+ F+WTA+ISG V   + + A
Sbjct: 138 VFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGA 197

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           ++L+  M+     + + F LS V+ A + +    LG+++HG  MR GF S+ +V +AL D
Sbjct: 198 VELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALID 257

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KC  I  AR++F+ +  RDV+SWT M+    Q GR EE  AL+  ++ +G +PN  T
Sbjct: 258 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 317

Query: 263 FAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F G++ AC+     + G+Q+   M    G  P     +  + + S+ G++  ++++   M
Sbjct: 318 FVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM 377

Query: 322 P-RPDLVSWTSLIAG 335
           P  PD  +W +L++ 
Sbjct: 378 PYEPDEATWGALLSA 392



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H  I++ G        +AL   Y K   + +A  +FD+   RD+  +++++        
Sbjct: 1   MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSAS 60

Query: 241 REEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
            E    +   ++ +  + P+ F  + V +  A   +  LG+Q+H +     Y+      S
Sbjct: 61  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKS 120

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           +LV MY KCG+ ++ +KVF+ M   + V WT+L++GYA NG  ++AL+ F
Sbjct: 121 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLF 170



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 42/193 (21%)

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +H  + + G   +    +ALV  Y+K   + ++  +F+  PR D+  ++SL+   + +  
Sbjct: 1   MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSAS 60

Query: 342 PDKALEYFELLLKS-GTQPDHIVFVGVLTACT-----------HAGLV------------ 377
           P+ AL     +L +    PDH V   V +              HA  V            
Sbjct: 61  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKS 120

Query: 378 ------------DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
                       D G + F S+  K+ + +TA     +V   A +GR  EA  +   MP 
Sbjct: 121 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTA-----LVSGYASNGRSEEALQLFRSMPG 175

Query: 426 KPDKFLWASLLGG 438
           + + F W +L+ G
Sbjct: 176 R-NLFAWTALISG 187


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 252/479 (52%), Gaps = 44/479 (9%)

Query: 2   IDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  L + +   EAL + H +      P    Y  +I+ C ++     G  VH+H+  SGF
Sbjct: 167 IRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGF 226

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +   +I + L+ +YA   ++  A+ LF+    RDV S+N MI G+ K   +  AR +FD 
Sbjct: 227 ECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDR 286

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M  RD  SW  MI+GY    +  EA  L+  M                            
Sbjct: 287 MVCRDVISWNTMINGYAIVGKIDEAKRLFDEMP--------------------------- 319

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
                        + + V W+++   + KCG++ +A  +F +M  RDVVSW +M+  Y Q
Sbjct: 320 -------------ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQ 366

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G+  E  ALF ++   G++P   T   +L+ACA   A + G  +H Y+     +  S  
Sbjct: 367 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV 426

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV MY+KCG +  + +VFN M   D+++W ++IAG A +G   +A + F+ + ++G 
Sbjct: 427 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGV 486

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +P+ I FV +L+AC+HAG+VD+G +    +   +G+    +HY C++DLLAR+G   EA 
Sbjct: 487 EPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAM 546

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           ++I  MPM+P+     +LLGGCRIHGN +L +   + L  ++P +   Y+ ++NIYA+A
Sbjct: 547 ELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAA 605


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 253/439 (57%), Gaps = 7/439 (1%)

Query: 43  EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTM 98
           EE  ++   +++ GFKP  F    ++       + +  Q +   + +    R+V   N  
Sbjct: 223 EEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAF 282

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
           +  ++K   + + R LF+EMP+ D  S+  +I+ Y    +  E++DL++ +Q F      
Sbjct: 283 LDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQ-FTTFDRK 341

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
            F   ++LS  ++   L++G+++H  ++ +  D D  V ++L DMY KCG   EA +IF 
Sbjct: 342 NFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFL 401

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
           ++  R  V WTAMI    Q G  E G  LF E+ ++ +  +  TFA VL A A+ A+  L
Sbjct: 402 RLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILL 461

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           GKQ+H  + R G+    ++  AL+ MY+ C +++++ K F  M   ++V+W +L++ YAQ
Sbjct: 462 GKQLHSCVIRSGFMNV-YSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQ 520

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           NG     L+ FE ++ SG QPD + F+ +LTAC+H  LV++GL+YF+ +   + L    +
Sbjct: 521 NGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKRE 580

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           HY  +VD L RSGRF EAE ++ +MP +PD+ +W S+L  CRIH N  LA++AA  LF +
Sbjct: 581 HYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNM 640

Query: 459 EP-ENPATYVTMANIYASA 476
           +   + A YVTM+NI+A A
Sbjct: 641 KVLRDAAPYVTMSNIFAEA 659



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 190/395 (48%), Gaps = 11/395 (2%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           + + +  +GF P     N ++   ++ G +  A+ L D+M  R+  S + +ISG+ K G+
Sbjct: 30  IDARIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGN 89

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
           L  AR +FD+  +R   +WT MI  Y + N+  +A  L+  M     S  +  T  ++L+
Sbjct: 90  LTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHR-SGSQPDYVTYITLLT 148

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS 227
             + ++  +   + H  I++ G   +  V + L D Y K G ++ AR++F +M   D VS
Sbjct: 149 GCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVS 208

Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
           +  MI  Y   G  EE   LF E+   G +P+ FTFA V++A         G+Q+HG++ 
Sbjct: 209 FNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVV 268

Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
           +  +    F  +A +  YSK   V   +K+FN MP  D VS+  +I  YA  G   ++++
Sbjct: 269 KTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESID 328

Query: 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH----YACI 403
            F+ L  +     +  F  +L+    +  +  G Q    +     +   AD        +
Sbjct: 329 LFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQV-----VVSMADPDFRVSNSL 383

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           VD+ A+ G+F EA+ +  ++  +     W +++  
Sbjct: 384 VDMYAKCGKFEEADRIFLRLSSR-STVPWTAMISA 417



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 194/439 (44%), Gaps = 39/439 (8%)

Query: 10  RLKEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  +A ++  ++    S P    Y +L+  C      +E  + H+ +   G      + N
Sbjct: 120 RFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCN 179

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            LLD Y K G +  A+ LF EM   D  S+N MI+G+   G  E+A  LF E        
Sbjct: 180 TLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVE-------- 231

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
                                  MQN     S+ FT ++V+SA   +     G++IHG++
Sbjct: 232 -----------------------MQNLGFKPSD-FTFAAVISASVGLDDTAFGQQIHGFV 267

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++T F  +  V +A  D Y K   +NE R++F++M + D VS+  +I  Y   G+ +E  
Sbjct: 268 VKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESI 327

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
            LF EL  +      F F  +L+  A     ++G+Q+H  +     DP    +++LV MY
Sbjct: 328 DLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMY 387

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           +KCG  E + ++F  +     V WT++I+   Q G+ +  L+ F  + ++    D   F 
Sbjct: 388 AKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFA 447

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VL A  +   +  G Q  HS   + G        A ++D+ A      +A     +M  
Sbjct: 448 CVLKASANLASILLGKQ-LHSCVIRSGFMNVYSGCA-LLDMYANCASIKDAIKTFEEMSE 505

Query: 426 KPDKFLWASLLGGCRIHGN 444
           + +   W +LL     +G+
Sbjct: 506 R-NVVTWNALLSAYAQNGD 523



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+  N   +K+A++   ++S  +   +++L+    QN   +   K    +  SG++P  
Sbjct: 484 LDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDS 543

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ-------ERDVCSYNTMISGFTKGGSLEQARNL 114
               C+L   + C  + +    F++M        +R+   Y  M+    + G  ++A  L
Sbjct: 544 VSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKRE--HYTAMVDALCRSGRFDEAEKL 601

Query: 115 FDEMP-QRDNFSWTAMIS 131
             +MP + D   WT++++
Sbjct: 602 MGQMPFEPDEIVWTSVLN 619


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 176/523 (33%), Positives = 264/523 (50%), Gaps = 85/523 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P   +Y  LI+      A   G   H+H+   G     F+ N ++DMYA+ G I  A+ +
Sbjct: 98  PDAFVYPILIK-----SAGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKV 152

Query: 84  FDEMQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
           FDE+   ER V  +N M+SG+ K  S  QA+ LFD MP+R+  +WTAM++GY +  + +E
Sbjct: 153 FDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKV-KDLE 211

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVW---- 197
           A   Y       + VS    LS       A + LRL  E+    +  G + DE  W    
Sbjct: 212 AARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEM----VNAGIEPDETTWVTVI 267

Query: 198 -------------------------------SALSDMYGKCGSINEARQIFDK------- 219
                                          +AL DMY KCGSI  AR+IFD+       
Sbjct: 268 SACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNS 327

Query: 220 -------------------------MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
                                    M  R+VV+W +MI  Y Q G+      LF E+I +
Sbjct: 328 VTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITA 387

Query: 255 G-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313
             + P+  T   V++AC    A ELG  V  ++T           +A++ MYS+CG++E+
Sbjct: 388 KKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMED 447

Query: 314 SKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373
           +K+VF  M   D+VS+ +LI+G+A +G   +A+     + + G +PD + F+GVLTAC+H
Sbjct: 448 AKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSH 507

Query: 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433
           AGL+++G + F SIK+        DHYAC+VDLL R G   +A+  + +MPM+P   ++ 
Sbjct: 508 AGLLEEGRKVFESIKDP-----AIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYG 562

Query: 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           SLL   RIH  ++L + AA  LFE+EP+N   ++ ++NIYASA
Sbjct: 563 SLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASA 605



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/324 (18%), Positives = 133/324 (41%), Gaps = 75/324 (23%)

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+  ++ +V  +T+M+  Y       +   +F  +   G+RP+AF +  ++ +  +   
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNG-- 113

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG--------------- 320
              G   H ++ ++G+   +F  +A++ MY++ G + +++KVF+                
Sbjct: 114 ---GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 321 ------------------MPRPDLVSWTSLI----------------------------- 333
                             MP  ++++WT+++                             
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNA 230

Query: 334 --AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
             +GYAQNG+ ++ L  F+ ++ +G +PD   +V V++AC+  G          ++ +K 
Sbjct: 231 MLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQ 290

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
            +         ++D+ A+ G    A  +  ++    +   W +++      GNLD    +
Sbjct: 291 -IQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD----S 345

Query: 452 AEALFEIEP-ENPATYVTMANIYA 474
           A  LF   P  N  T+ +M   YA
Sbjct: 346 ARELFNTMPGRNVVTWNSMIAGYA 369


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/494 (32%), Positives = 262/494 (53%), Gaps = 58/494 (11%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKP 59
           LC   +L EAL+ L ++      P     SS++  C     L  GK++H++ LK+     
Sbjct: 190 LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 249

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             F+ + L+DMY  C  +   + +FD M +R +        G                  
Sbjct: 250 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI--------GL----------------- 284

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG- 178
                 W AMI+GY +     EAL L+  M+     ++N  T++ V+ A     C+R G 
Sbjct: 285 ------WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA-----CVRSGA 333

Query: 179 ----KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
               + IHG++++ G D D  V + L DMY + G I+ A +IF KM DRD+V+W  MI  
Sbjct: 334 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 393

Query: 235 YFQEGRREEGFALFSEL-----------IKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           Y      E+   L  ++            +  ++PN+ T   +L +CA  +A   GK++H
Sbjct: 394 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 453

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y  +          SALV MY+KCG ++ S+KVF+ +P+ ++++W  +I  Y  +G   
Sbjct: 454 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 513

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +A++   +++  G +P+ + F+ V  AC+H+G+VD+GL+ F+ +K  +G+  ++DHYAC+
Sbjct: 514 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 573

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           VDLL R+GR  EA  +++ MP   +K   W+SLLG  RIH NL++ + AA+ L ++EP  
Sbjct: 574 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 633

Query: 463 PATYVTMANIYASA 476
            + YV +ANIY+SA
Sbjct: 634 ASHYVLLANIYSSA 647



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 201/421 (47%), Gaps = 41/421 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQT 82
           P    + +L++     + +E GK++H+H+   G+    V ++N L+++Y KCG+      
Sbjct: 8   PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 67

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD + ER+  S+N++IS      S E+               W               A
Sbjct: 68  VFDRISERNQVSWNSLISSLC---SFEK---------------WEM-------------A 96

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAI---QCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           L+ +R M + EN   + FTL SV++A S +   + L +GK++H Y +R G + +  + + 
Sbjct: 97  LEAFRCMLD-ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 154

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MYGK G +  ++ +      RD+V+W  ++    Q  +  E      E++  G+ P+
Sbjct: 155 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVF 318
            FT + VL AC+       GK++H Y  + G  D  SF  SALV MY  C  V + ++VF
Sbjct: 215 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 274

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLV 377
           +GM    +  W ++IAGY+QN    +AL  F  + +S G   +     GV+ AC  +G  
Sbjct: 275 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 334

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +  +  H    K GL         ++D+ +R G+   A  +  KM  + D   W +++ 
Sbjct: 335 SRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMIT 392

Query: 438 G 438
           G
Sbjct: 393 G 393



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF-AASALVHMYSKCG 309
           +I  GI+P+ + F  +L A AD    ELGKQ+H ++ + GY   S   A+ LV++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369
           +     KVF+ +   + VSW SLI+        + ALE F  +L    +P     V V+T
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 370 ACTH 373
           AC++
Sbjct: 121 ACSN 124


>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
          Length = 533

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 221/412 (53%), Gaps = 40/412 (9%)

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           ++N L+D+YAKC ++  A T   ++   D  S+N+++    +  S+  A +LF  MP R 
Sbjct: 119 VANALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRT 178

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             SW AM+  YV       A  ++  M                                 
Sbjct: 179 QVSWNAMVVVYVNAGDVSSARRVFDQMPT------------------------------- 207

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
                     D   WS L   Y KCGS+  AR++FD+M  +++V+WTAMI  Y Q G  +
Sbjct: 208 ---------RDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPK 258

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           E  ALF E+  +GI P+A T  GV++A +   + EL   V  Y+ +   +      +ALV
Sbjct: 259 ESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALV 318

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362
            M++KCGNV+ +   F  + +PD   +T+LI+G A +G    AL+ FE +      PD I
Sbjct: 319 DMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPI 378

Query: 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422
            FVGVLTAC+HAGLVDKGL Y+ ++ + +G+   ADHYAC+VD+L R+GR  EA +++  
Sbjct: 379 TFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQT 438

Query: 423 MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           MPM P      +LL  C+ HGN+++A+  A  LFE+EP N   Y+ ++NIYA
Sbjct: 439 MPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYA 490



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 33/296 (11%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P     N LL  +A+  ++ DA++LF  M  R   S+N M+  +   G +  AR +FD+M
Sbjct: 146 PDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQM 205

Query: 119 PQRDNFS-------------------------------WTAMISGYVRYNQPIEALDLYR 147
           P RD+ S                               WTAMI+GY +   P E+L L+R
Sbjct: 206 PTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFR 265

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M+       +  T+  V+SA S I    L   +  Y+ +   + ++ V +AL DM+ KC
Sbjct: 266 EMEA-AGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKC 324

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
           G+++EA   F ++   D   +TA+I      G  +    +F  +    + P+  TF GVL
Sbjct: 325 GNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVL 384

Query: 268 NACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            AC+     + G      M +  G +  +   + +V M  + G +E + ++   MP
Sbjct: 385 TACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMP 440



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 98/275 (35%), Gaps = 69/275 (25%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KE+L +  ++      P  +    +I    Q  + E    V S++     +    +   L
Sbjct: 258 KESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTAL 317

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DM+AKCGN+ +A + F E+ + D   Y  +ISG    G  + A  +F+ M         
Sbjct: 318 VDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERM--------- 368

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                    ++   +  T   VL+A S           H  ++ 
Sbjct: 369 -----------------------QAQSVWPDPITFVGVLTACS-----------HAGLVD 394

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
            G D     W A+   YG     +    + D            M+GR    GR EE F +
Sbjct: 395 KGLD----YWEAMVKYYGMERRADHYACVVD------------MLGR---AGRLEEAFEM 435

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
             + +  G  P A     +L+AC  H   E+ + V
Sbjct: 436 V-QTMPMGPHPGA--LGALLSACKTHGNVEIAEIV 467


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 242/441 (54%), Gaps = 31/441 (7%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C     L  GK++H  +  S  +  V +   L+DMYAKCG                    
Sbjct: 237 CSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGR------------------- 277

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
                       ++ A  LFD++  +   +W AMI GY    Q  E+    R MQ     
Sbjct: 278 ------------MDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKL 325

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             +  T+ ++L   + ++ + LGK +HG+ +R GF    V+ +AL DMYG+CG +  A  
Sbjct: 326 HPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAEC 385

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F +M +R+++SW AMI  Y + G   +   LF +L    ++P+A T A +L A A+ A+
Sbjct: 386 LFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELAS 445

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
               +Q+HGY+T++  D  +F ++++V MY KCGN+  ++++F+ M   D++SW ++I  
Sbjct: 446 LREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMA 505

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           YA +G    ++E F  + + G +P+   FV +L +C+ AGLV++G +YF+S+K  + +  
Sbjct: 506 YAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINP 565

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HY CI+DL+ R+G    A++ I +MP+ P   +W SLL   R  G+++LA+ AAE +
Sbjct: 566 GIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHI 625

Query: 456 FEIEPENPATYVTMANIYASA 476
             +E +N   YV ++N+YA A
Sbjct: 626 LSLEHDNTGCYVLLSNMYAEA 646



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 217/446 (48%), Gaps = 42/446 (9%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  +I+ C     L EG++VH  +  SG    ++I N L+ MYAK G I  A+ +F EM 
Sbjct: 129 YPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMP 188

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            RD+ S+N+MISG+   G   ++ + F EM            SG          LD    
Sbjct: 189 VRDLVSWNSMISGYVSVGDGWRSLSCFREMQA----------SGI--------KLD---- 226

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                     +F++  +L A S    LR GKEIH  +MR+  + D +V ++L DMY KCG
Sbjct: 227 ----------RFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCG 276

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAFTFAGVL 267
            ++ A ++FD++ D+ +V+W AMIG Y    +  E FA   ++ + G + P+  T   +L
Sbjct: 277 RMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLL 336

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
             CA   A  LGK VHG+  R G+ P+    +ALV MY +CG ++ ++ +F  M   +L+
Sbjct: 337 PPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLI 396

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           SW ++IA Y +NG   KA+  F+ L     +PD      +L A      + +  Q  H  
Sbjct: 397 SWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQ-IHGY 455

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG---- 443
             K  L         IV +  + G    A ++  +M  K D   W +++    IHG    
Sbjct: 456 VTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFK-DVISWNTVIMAYAIHGFGRI 514

Query: 444 NLDLAKRAAEALFEIEPENPATYVTM 469
           +++L     E  FE    N +T+V++
Sbjct: 515 SIELFSEMREKGFE---PNGSTFVSL 537



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 179/372 (48%), Gaps = 8/372 (2%)

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
           + ER+  S    +S + + G ++ A +LF+ M Q D F W  MI G+V      +A+D Y
Sbjct: 55  LVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFY 114

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
             M+ F     + FT   V+ A   +  L  G+ +HG ++++G D D  + ++L  MY K
Sbjct: 115 HRME-FGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAK 173

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
            G I  A  +F +M  RD+VSW +MI  Y   G      + F E+  SGI+ + F+  G+
Sbjct: 174 IGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGI 233

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L AC+       GK++H  M R   +      ++LV MY+KCG ++ ++++F+ +    +
Sbjct: 234 LGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSI 293

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           V+W ++I GY+ N    ++  Y   + + G   PD I  + +L  C     +  G +  H
Sbjct: 294 VAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLG-KSVH 352

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
               ++G          +VD+    G+   AE +  +M  + +   W +++     +G  
Sbjct: 353 GFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNER-NLISWNAMIASYTKNGE- 410

Query: 446 DLAKRAAEALFE 457
               R A  LF+
Sbjct: 411 ---NRKAMTLFQ 419



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 152/320 (47%), Gaps = 34/320 (10%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HP      +L+  C Q  A+  GK VH     +GF P + +   L+DMY +CG +  A+ 
Sbjct: 326 HPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAEC 385

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           LF +M ER++ S+N MI+ +TK G   +A  LF ++                  N+ ++ 
Sbjct: 386 LFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLC-----------------NKTLKP 428

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                          +  T++S+L A + +  LR  ++IHGY+ +   DS+  V +++  
Sbjct: 429 ---------------DATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVF 473

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MYGKCG++  AR+IFD+M  +DV+SW  +I  Y   G       LFSE+ + G  PN  T
Sbjct: 474 MYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGST 533

Query: 263 FAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F  +L +C+       G +    M R    +P       ++ +  + GN++++K     M
Sbjct: 534 FVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEM 593

Query: 322 P-RPDLVSWTSLIAGYAQNG 340
           P  P    W SL+      G
Sbjct: 594 PLAPTARIWGSLLTASRNKG 613



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 60/115 (52%)

Query: 7   NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           N++ +     + ++   P  +  +S++    +  +L E +++H ++         F+SN 
Sbjct: 411 NRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNS 470

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
           ++ MY KCGN+  A+ +FD M  +DV S+NT+I  +   G    +  LF EM ++
Sbjct: 471 IVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREK 525


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/486 (32%), Positives = 250/486 (51%), Gaps = 65/486 (13%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           S P P I S    F     ++ E  + H+H+  SG     F ++ L+   A     S AQ
Sbjct: 4   SFPPPPILS----FAEMATSISELHQAHAHILKSGLIHSTFAASRLI---ASVSTNSHAQ 56

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                    ++  A ++F  +P  +++ W  +I  Y     P  
Sbjct: 57  -------------------------AIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEA 91

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           AL ++  M +  + + +K+T +  L +  +   +  G++IHG++++TG   D  + + L 
Sbjct: 92  ALTIFHQMLH-ASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLI 150

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTA------------------------------- 230
            +Y  CG I +AR + D+M++RDVVSW A                               
Sbjct: 151 HLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWN 210

Query: 231 -MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
            MI  Y   GR  E   LF ++  +G++P+  T   VL+ACA   A   G+ VH Y+ + 
Sbjct: 211 AMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKN 270

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G     F A+ALV MYSKCG++E + +VFN   R D+ +W S+I+G + +G    AL+ F
Sbjct: 271 GISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIF 330

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
             +L  G +P+ + FV VL+AC+ AGL+D+G + F+ +   HG+  T +HY C+VDLL R
Sbjct: 331 SEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGR 390

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
            G   EAE+++ KMP K    +W SLLG CR HGN++LA+R A+ L E+ P+  +++V +
Sbjct: 391 VGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQL 450

Query: 470 ANIYAS 475
           +N+YAS
Sbjct: 451 SNMYAS 456



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 189/359 (52%), Gaps = 8/359 (2%)

Query: 7   NQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           N    + AL I HQ+ H    P    ++  ++ C     +EEG+++H H+  +G    +F
Sbjct: 85  NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLF 144

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA-RNLFDEMPQR 121
           I N L+ +YA CG I DA+ L D M ERDV S+N ++S + + G +E A R +F E P +
Sbjct: 145 IQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVK 204

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
           +  SW AMI+GY    +  E L L+  MQ+      N  TL SVLSA + +  L  G+ +
Sbjct: 205 NVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDN-CTLVSVLSACAHVGALSQGEWV 263

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H YI + G   D  V +AL DMY KCGSI +A ++F+  + +D+ +W ++I      G  
Sbjct: 264 HAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSG 323

Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASA 300
           +    +FSE++  G +PN  TF  VL+AC+     + G+++   M  + G  P       
Sbjct: 324 QHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGC 383

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDL-VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +V +  + G +E ++++   MP+ +  V W SL+     +G  + A    + LL+   Q
Sbjct: 384 MVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQ 442



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           +D+      +++AL++ +       S ++S+I     + + +   ++ S +   GFKP  
Sbjct: 283 VDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNE 342

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQ-----ERDVCSYNTMISGFTKGGSLEQARNLFD 116
               C+L   ++ G + + + +F+ M      +  +  Y  M+    + G LE+A  L  
Sbjct: 343 VTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQ 402

Query: 117 EMPQRD-NFSWTAMISGYVRYNQPIE 141
           +MPQ++ +  W +++ G  R +  +E
Sbjct: 403 KMPQKEASVVWESLL-GACRNHGNVE 427


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/511 (30%), Positives = 277/511 (54%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  L    R++EAL ++ ++         + Y+S +  C +  +L  GK++H+ +  S  
Sbjct: 242 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 301

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +   ++++ L+++YAKCG                               S ++A+ +F+ 
Sbjct: 302 QIDPYVASALIELYAKCG-------------------------------SFKEAKRVFNS 330

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R++ SWT +I G ++Y    ++++L+  M+  E    ++F L++++S       L L
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCL 389

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT-------- 229
           G+++H   +++G +   VV ++L  +Y KCG +  A  +F  M +RD+VSWT        
Sbjct: 390 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 230 -----------------------AMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAG 265
                                  AM+G Y Q G  E+G  ++S ++ +  + P+  T+  
Sbjct: 450 IGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G+  + G       A+A + MYSKCG +  ++K+F+ +   D
Sbjct: 510 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 569

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++I GY+Q+GM  +A + F+ +L  G +PD+I +V VL+ C+H+GLV +G  YF 
Sbjct: 570 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 629

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +   HG++   +H++C+VDLL R+G   EA+D+I KMPMKP   +W +LL  C+IHGN 
Sbjct: 630 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 689

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ AA+ +FE++  +  +Y+ +A IY+ A
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLLAKIYSDA 720



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 222/475 (46%), Gaps = 41/475 (8%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD-EMQERD 91
           ++ C    AL   + +H  L + G    VF+ N LL  Y  CG +SDA+ L   +++E +
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V ++N M++G+ K GSL  A  LFD MP+RD  SW  ++SGY +  + ++ L+ +  M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG--- 208
             +S+ N FT   V+ +  A+ C  L  ++ G   +  F  D  V +AL DM+ +CG   
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 209 ----------------------------SINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                                        I+ A + F+ M +RDVVSW  MI    Q GR
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAA 298
             E   L  E+ + G+R ++ T+   L ACA   +   GKQ+H  + R     DPY   A
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY--VA 308

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           SAL+ +Y+KCG+ + +K+VFN +   + VSWT LI G  Q     K++E F  +      
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            D      +++ C +   +  G Q  HS+  K G          ++ L A+ G    AE 
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           V S M  + D   W S++      GN+    +A E    ++  N  T+  M   Y
Sbjct: 428 VFSSMSER-DIVSWTSMITAYSQIGNI---IKAREFFDGMDTRNAITWNAMLGAY 478



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 47/215 (21%)

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK------ 316
            A  L +C    A    + +HG +  +G     F  + L+H Y  CG + ++++      
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 317 --------------------------VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                                     +F+ MPR D+ SW +L++GY Q       LE F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 351 LLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CI 403
            + +SG + P+   F  V+ +C   G  +   Q         GL +  D +        +
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL-------GLFWKFDFWGDPDVETAL 179

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           VD+  R G    A  + S++  +P  F   S+L G
Sbjct: 180 VDMFVRCGYVDFASRLFSQIE-RPTIFCRNSMLAG 213


>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
 gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
          Length = 721

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 251/452 (55%), Gaps = 33/452 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+ + +S +++       L  GK+VH  L   G +    +   LL MY +CG +      
Sbjct: 207 PTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGM------ 260

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
            DE+  R  C                          + D FS T++++ Y R    +EA+
Sbjct: 261 -DEIT-RLACRI------------------------RHDAFSRTSLLTAYARNGCNMEAV 294

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++R M      + ++  ++S+L   S++  LR+ KEIH Y ++  F  D ++ +A+  +
Sbjct: 295 RVFRDMLMGHMPI-DQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTV 353

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCG I  +  +F+ + ++D +SWTA++  Y Q    +E    F E+++ G+  + F  
Sbjct: 354 YGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCI 413

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             VL AC+  ++   G Q+H  + ++G D  +   +ALV MY+KCG V+ + K+FN M  
Sbjct: 414 TSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRN 473

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             ++SW +LI  ++Q+G    A++ F+++ +    PD   FVG+L++C+  GLV +G +Y
Sbjct: 474 RGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEY 533

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +K K+ L    +HY C+VDL AR+GRF +A   I  MP +PD+ +W +LL  CR+HG
Sbjct: 534 FKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHG 593

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
           NLDL + AA+ + EI+PE+P+ Y+ +++I+AS
Sbjct: 594 NLDLGRMAAKKILEIKPEDPSPYIILSSIHAS 625



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 173/365 (47%), Gaps = 13/365 (3%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR-MMQNFEN 154
           N ++  +   G L  AR +FDEMP+R+  SW+ +I+   R     +AL L+  M++  E 
Sbjct: 41  NNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGER 100

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
              N FT++++++  +  +    G+++H   ++ G D DE V   L DMY KCG +  + 
Sbjct: 101 DRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSW 160

Query: 215 QIFDKMVDRDVVSWTAMIG---RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           + F     R V+SWT+MI     +   G R+    LF +++   + P   TF+ +L    
Sbjct: 161 RAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFD 220

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
                  GKQVHG + ++G +      +AL+ MY +CG ++   ++   + R D  S TS
Sbjct: 221 VPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRI-RHDAFSRTS 279

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           L+  YA+NG   +A+  F  +L      D      +L  C+  G + + ++  H    K+
Sbjct: 280 LLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQL-RVVKEIHCYALKN 338

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
                      IV +  + G    +E V + +  K D   W +LL  C +  +L     +
Sbjct: 339 FFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENK-DTISWTALL-TCYVQNDL-----S 391

Query: 452 AEALF 456
            EALF
Sbjct: 392 QEALF 396



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 198/441 (44%), Gaps = 42/441 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    ++L+  C + +    G++VH+     G      ++  L+DMYAKCG +      
Sbjct: 103 PNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRV------ 156

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP---I 140
                                 GS  +A   F   PQR   SWT+MI+  V +       
Sbjct: 157 ----------------------GSSWRA---FVLTPQRSVLSWTSMIACLVNHGDSGYRD 191

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            A+ L++ M   +   +N  T S +L      + L  GK++HG +++ G + D  + +AL
Sbjct: 192 TAIVLFKKMLVLKVWPTNA-TFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTAL 250

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MYG+CG ++E  ++  + +  D  S T+++  Y + G   E   +F +++   +  + 
Sbjct: 251 LAMYGRCGGMDEITRLACR-IRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQ 309

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
                +L  C+      + K++H Y  +  +   +   +A+V +Y KCG++ +S+ VFN 
Sbjct: 310 SAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNT 369

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           +   D +SWT+L+  Y QN +  +AL +F  +++ G +        VL AC+    +  G
Sbjct: 370 LENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCG 429

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
            Q  HS   K G+         +V + A+ G    A  + + M  +     W +L+    
Sbjct: 430 WQ-IHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRNR-GIISWNALITSFS 487

Query: 441 IHGNLDLAKRAAEALFEIEPE 461
            HGN    + AA  LF++  E
Sbjct: 488 QHGN----EVAAIQLFDMMQE 504



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 8/263 (3%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           + +HG  ++ G  +   + + L   Y   G + +AR +FD+M  R+VVSW+ +I    + 
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRL 81

Query: 239 GRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
           G   +  +LF+ +++ G   RPN+FT A ++  CA       G+QVH    ++G D    
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA---GYAQNGMPDKALEYFELLL 353
            A  LV MY+KCG V +S + F   P+  ++SWTS+IA    +  +G  D A+  F+ +L
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKML 201

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
                P +  F  +L       L+  G Q  H    K G          ++ +  R G  
Sbjct: 202 VLKVWPTNATFSCILKVFDVPELLPSGKQ-VHGCLVKMGTEVDPALGTALLAMYGRCGGM 260

Query: 414 HEAEDVISKMPMKPDKFLWASLL 436
            E   +  +  ++ D F   SLL
Sbjct: 261 DEITRLACR--IRHDAFSRTSLL 281


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 167/510 (32%), Positives = 280/510 (54%), Gaps = 51/510 (10%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           L  A    +Q   P+   +++LI       A E    V  HL     +P +   N L++ 
Sbjct: 59  LTTAHHAFNQTHEPNVFSFNALIA----AYAKESLIHVAHHLFDQIPQPDLVSFNTLINA 114

Query: 71  YAKCGNISDAQTLFDEMQERDV--------------CSY--------------------- 95
           YA  G+   A +LF EM+E  +              C++                     
Sbjct: 115 YADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVS 174

Query: 96  --NTMISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMM-- 149
             N++++ ++K G LE+A  +F+ M +  RD  SW +MI  Y ++ + ++AL LYR M  
Sbjct: 175 VKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVH 234

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           + FE    + FTL+SVL+  S ++ L  G + H   ++TGF+ +  V S L DMY KCG+
Sbjct: 235 RGFE---IDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGA 291

Query: 210 -INEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE-EGFALFSELIKSGIRPNAFTFAGVL 267
            ++E+R++F+++   D+V W  MI  Y Q      E    F ++ ++G  P+  +F   +
Sbjct: 292 GMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAI 351

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMPRPDL 326
           +AC++ ++   GKQ H    +        + + ALV MYSKCGN+++++K+F  MP+ + 
Sbjct: 352 SACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNT 411

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V+  S+IAGYAQ+G+  ++L  FE +L +   P  I  V +L+AC H G V++G +YF+ 
Sbjct: 412 VTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNM 471

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +K+  G+   A+HY+C++DLL R+G+  EAE +I  MP  P    WA+LLG CR +GN++
Sbjct: 472 MKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNME 531

Query: 447 LAKRAAEALFEIEPENPATYVTMANIYASA 476
           LA++AA    ++EP N   Y+ +A++Y++A
Sbjct: 532 LAEKAANQFLQLEPTNAVPYIMLASMYSAA 561



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 216/424 (50%), Gaps = 18/424 (4%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +  +++ C  N+ L  GK +H+    S      ++SN  + +Y+KC  ++ A   F++  
Sbjct: 11  FRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTH 70

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
           E +V S+N +I+ + K   +  A +LFD++PQ D  S+  +I+ Y      + AL L+  
Sbjct: 71  EPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGE 130

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLG--KEIHGYIMRTGFDSDEVVWSALSDMYGK 206
           M+     V + FT S V++A     C  +G  +++H     +GFDS   V ++L   Y K
Sbjct: 131 MREM-GLVMDGFTFSGVITAC----CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSK 185

Query: 207 CGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            G + EA  +F+ M +  RD VSW +MI  Y Q  R  +  AL+ +++  G   + FT A
Sbjct: 186 NGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLA 245

Query: 265 GVLNACADHAAEEL--GKQVHGYMTRIGYDPYSFAASALVHMYSKCG-NVENSKKVFNGM 321
            VL   +    E+L  G Q H    + G++      S L+ MY+KCG  +  S+KVF  +
Sbjct: 246 SVLTTFS--CVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI 303

Query: 322 PRPDLVSWTSLIAGYAQNG-MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
              DLV W ++I+GY+QN  +  +ALE F  + ++G  PD   FV  ++AC++     +G
Sbjct: 304 CGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG 363

Query: 381 LQYFHSIKEKHGL-TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
            Q FH++  K  + +        +V + ++ G   +A  +  +MP + +     S++ G 
Sbjct: 364 KQ-FHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGY 421

Query: 440 RIHG 443
             HG
Sbjct: 422 AQHG 425



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 39/243 (16%)

Query: 7   NQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHS-HLKSSGFKPGV 61
           N+    EAL+   Q+      P    +   I  C    +  +GK+ H+  +KS      +
Sbjct: 321 NKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQI 380

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            ++N L+ MY+KCGN+ DA+ LF  M + +  + N++I+G+ + G   ++ NLF++M   
Sbjct: 381 SVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQM--- 437

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
                 A I+                             TL S+LSA +    +  GK+ 
Sbjct: 438 ----LAASIA-------------------------PTSITLVSILSACAHTGRVEEGKKY 468

Query: 182 HGYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEG 239
              +    G + +   +S + D+ G+ G ++EA ++ D M       +W A++G   + G
Sbjct: 469 FNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYG 528

Query: 240 RRE 242
             E
Sbjct: 529 NME 531



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 88/214 (41%), Gaps = 49/214 (22%)

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           +F  +L +C  +     GK +H    +      ++ ++  + +YSKC  +  +   FN  
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 322 PRPDLVSWTSLIAGYAQNGM-------------PD------------------KALEYFE 350
             P++ S+ +LIA YA+  +             PD                   AL  F 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 351 LLLKSGTQPDHIVFVGVLTA-CTHAGLVDKGLQYFHSIKEKHGLTYTA--DHYACIVDLL 407
            + + G   D   F GV+TA C H GL          I++ H L +++  D Y  + + L
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGL----------IRQLHSLAFSSGFDSYVSVKNSL 179

Query: 408 ----ARSGRFHEAEDVISKMPMK-PDKFLWASLL 436
               +++G   EAE V + M  +  D+  W S++
Sbjct: 180 LTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMI 213


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 226/385 (58%), Gaps = 1/385 (0%)

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           +D    N  ++ + K  SL+ A  +F  M  +   SW A+I  + +   P ++LDL+ +M
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVM 493

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
            +      ++FT+ S+L A + ++ LR GKEIHG+++R G + DE +  +L  +Y +C S
Sbjct: 494 MD-SGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSS 552

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           +   + IFDKM ++ +V W  MI  + Q     E    F +++  GI+P      GVL A
Sbjct: 553 MLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGA 612

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+  +A  LGK+VH +  +      +F   AL+ MY+KCG +E S+ +F+ +   D   W
Sbjct: 613 CSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVW 672

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
             +IAGY  +G   KA+E FEL+   G +PD   F+GVL AC HAGLV +GL+Y   ++ 
Sbjct: 673 NVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQN 732

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            +G+    +HYAC+VD+L R+G+  EA  ++++MP +PD  +W+SLL  CR +G+L++ +
Sbjct: 733 LYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGE 792

Query: 450 RAAEALFEIEPENPATYVTMANIYA 474
             ++ L E+EP     YV ++N+YA
Sbjct: 793 EVSKKLLELEPNKAENYVLLSNLYA 817



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 217/441 (49%), Gaps = 9/441 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL---KSSGFKPGVFISNCL 67
           ++ A+++   + + +   ++S++  C +N    E   V   L   +  G  P V     +
Sbjct: 246 VESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305

Query: 68  LDMYAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +   A  G +     +    F      +V   N+++  ++K G L +AR LFD    ++ 
Sbjct: 306 IPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            SW  +I GY +        +L + MQ  E    N+ T+ +VL A S    L   KEIHG
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y  R GF  DE+V +A    Y KC S++ A ++F  M  + V SW A+IG + Q G   +
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF  ++ SG+ P+ FT   +L ACA       GK++HG+M R G +   F   +L+ 
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMS 545

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           +Y +C ++   K +F+ M    LV W  +I G++QN +P +AL+ F  +L  G +P  I 
Sbjct: 546 LYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIA 605

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
             GVL AC+    +  G +  HS   K  L+  A     ++D+ A+ G   +++++  ++
Sbjct: 606 VTGVLGACSQVSALRLG-KEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRV 664

Query: 424 PMKPDKFLWASLLGGCRIHGN 444
             K D+ +W  ++ G  IHG+
Sbjct: 665 NEK-DEAVWNVIIAGYGIHGH 684



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 177/355 (49%), Gaps = 41/355 (11%)

Query: 42  LEEGKKVHS-HLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           +E G+ VH+  LK+ GF    F+ N L+ MY KCG +  A  +F+ M+ R++ S+N+++ 
Sbjct: 211 VELGEAVHALALKAGGFSDA-FVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMY 269

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
             ++ G   +   +F  +                             ++   E  V +  
Sbjct: 270 ACSENGGFGECCGVFKRL-----------------------------LISEEEGLVPDVA 300

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T+ +V+ A +A+  +R+G  +HG   + G   +  V ++L DMY KCG + EAR +FD  
Sbjct: 301 TMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMN 360

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGVLNACA-DHAAEEL 278
             ++VVSW  +I  Y +EG     F L  E+ +   +R N  T   VL AC+ +H    L
Sbjct: 361 GGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSL 420

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
            K++HGY  R G+      A+A V  Y+KC +++ +++VF GM    + SW +LI  +AQ
Sbjct: 421 -KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQ 479

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           NG P K+L+ F +++ SG  PD      +L AC         L++    KE HG 
Sbjct: 480 NGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR-------LKFLRCGKEIHGF 527



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 191/406 (47%), Gaps = 55/406 (13%)

Query: 5   LCNQRRLKEALQILHQISHPSPSIYSS----------LIQFCRQNRALEEGKKVHSHLKS 54
           LC+   L +AL +LH  SH      SS          L++ C  ++ +  G+KVH+ + +
Sbjct: 63  LCDSGNLNDALNLLH--SHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSA 120

Query: 55  S-GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           S   +  V +S  ++ MY+ CG+ SD+                               R 
Sbjct: 121 SHKLRNDVVLSTRIIAMYSACGSPSDS-------------------------------RG 149

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           +FD   ++D F + A++SGY R     +A+ L+  + +  +   + FTL  V  A + + 
Sbjct: 150 VFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVA 209

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            + LG+ +H   ++ G  SD  V +AL  MYGKCG +  A ++F+ M +R++VSW +++ 
Sbjct: 210 DVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMY 269

Query: 234 RYFQEGRREEGFALFSELIKS---GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
              + G   E   +F  L+ S   G+ P+  T   V+ ACA      +G  VHG   ++G
Sbjct: 270 ACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLG 329

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF- 349
                   ++LV MYSKCG +  ++ +F+     ++VSW ++I GY++ G      E   
Sbjct: 330 ITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           E+  +   + + +  + VL AC+       G     S+KE HG  +
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACS-------GEHQLLSLKEIHGYAF 428



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 162/337 (48%), Gaps = 14/337 (4%)

Query: 145 LYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALS 201
           L+   QN   S S+  K  +  +L A    + + +G+++H  +  +    +D V+ + + 
Sbjct: 76  LHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRII 135

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNA 260
            MY  CGS +++R +FD   ++D+  + A++  Y +     +  +LF EL+  + + P+ 
Sbjct: 136 AMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDN 195

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           FT   V  ACA  A  ELG+ VH    + G    +F  +AL+ MY KCG VE++ KVF  
Sbjct: 196 FTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFET 255

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS---GTQPDHIVFVGVLTACTHAGLV 377
           M   +LVSW S++   ++NG   +    F+ LL S   G  PD    V V+ AC   G V
Sbjct: 256 MRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEV 315

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
             G+   H +  K G+T        +VD+ ++ G   EA  +   M    +   W +++ 
Sbjct: 316 RMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD-MNGGKNVVSWNTIIW 373

Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATY--VTMANI 472
           G    G+    +   E L E++ E       VT+ N+
Sbjct: 374 GYSKEGDF---RGVFELLQEMQREEKVRVNEVTVLNV 407



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 36/246 (14%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L     P     + ++  C Q  AL  GK+VHS    +      F++  L+DMYAKCG
Sbjct: 593 QMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCG 652

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            +  +Q +FD + E+D   +N +I                               +GY  
Sbjct: 653 CMEQSQNIFDRVNEKDEAVWNVII-------------------------------AGYGI 681

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDE 194
           +   ++A++L+ +MQN +    + FT   VL A +    +  G +  G +    G     
Sbjct: 682 HGHGLKAIELFELMQN-KGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKL 740

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQEGRREEGFALFSELIK 253
             ++ + DM G+ G + EA ++ ++M D  D   W++++      G  E G  +  +L++
Sbjct: 741 EHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE 800

Query: 254 SGIRPN 259
             + PN
Sbjct: 801 --LEPN 804


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/511 (30%), Positives = 277/511 (54%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  L    R++EAL ++ ++         + Y+S +  C +  +L  GK++H+ +  S  
Sbjct: 242 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 301

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +   ++++ L+++YAKCG                               S ++A+ +F+ 
Sbjct: 302 QIDPYVASALIELYAKCG-------------------------------SFKEAKRVFNS 330

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R++ SWT +I G ++Y    ++++L+  M+  E    ++F L++++S       L L
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCL 389

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT-------- 229
           G+++H   +++G +   VV ++L  +Y KCG +  A  +F  M +RD+VSWT        
Sbjct: 390 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 230 -----------------------AMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAG 265
                                  AM+G Y Q G  E+G  ++S ++ +  + P+  T+  
Sbjct: 450 IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G+  + G       A+A + MYSKCG +  ++K+F+ +   D
Sbjct: 510 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 569

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++I GY+Q+GM  +A + F+ +L  G +PD+I +V VL+ C+H+GLV +G  YF 
Sbjct: 570 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 629

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +   HG++   +H++C+VDLL R+G   EA+D+I KMPMKP   +W +LL  C+IHGN 
Sbjct: 630 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 689

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ AA+ +FE++  +  +Y+ +A IY+ A
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLLAKIYSDA 720



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 221/475 (46%), Gaps = 41/475 (8%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD-EMQERD 91
           ++ C    AL   + +H  L + G    VF+ N LL  Y  CG +SDA+ L   +++E +
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
           V ++N M++G+ K GSL  A  LFD MP+RD  SW  ++SGY +  + ++ L+ +  M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG--- 208
             +S+ N FT   V+ +  A+ C  L  ++ G   +  F  D  V +AL DM+ +CG   
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 209 ----------------------------SINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
                                        I+ A + F+ M +RDVVSW  MI    Q GR
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAA 298
             E   L  E+ + G+R ++ T+   L ACA   +   GKQ+H  + R     DPY   A
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY--VA 308

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           SAL+ +Y+KCG+ + +K+VFN +   + VSWT LI G  Q     K++E F  +      
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            D      +++ C +   +  G Q  HS+  K G          ++ L A+ G    AE 
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           V S M  + D   W S++      GN+    +A E    +   N  T+  M   Y
Sbjct: 428 VFSSMSER-DIVSWTSMITAYSQIGNI---IKAREFFDGMATRNAITWNAMLGAY 478



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 47/215 (21%)

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK------ 316
            A  L +C    A    + +HG +  +G     F  + L+H Y  CG + ++++      
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 317 --------------------------VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                                     +F+ MPR D+ SW +L++GY Q       LE F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 351 LLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CI 403
            + +SG + P+   F  V+ +C   G  +   Q         GL +  D +        +
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL-------GLFWKFDFWGDPDVETAL 179

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           VD+  R G    A  + S++  +P  F   S+L G
Sbjct: 180 VDMFVRCGYVDFASRLFSQIE-RPTIFCRNSMLAG 213


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 250/456 (54%), Gaps = 33/456 (7%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           ++P+  I++ ++  C  +  ++EGK+ H +L  SG     ++ N L+ MY++C ++    
Sbjct: 124 AYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHV---- 179

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                      + A  + D +P  D FS+ +++S  V      E
Sbjct: 180 ---------------------------DSAMQILDTVPGDDVFSYNSILSALVESGCRGE 212

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A  + + M + E  + +  T  SVL   + I+ L+LG +IH  +++TG   D  V S L 
Sbjct: 213 AAQVLKRMVD-ECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLI 271

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D YGKCG +  AR+ FD + DR+VV+WTA++  Y Q G  EE   LF+++     RPN F
Sbjct: 272 DTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEF 331

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           TFA +LNACA   A   G  +HG +   G+  +    +AL++MYSK GN+++S  VF+ M
Sbjct: 332 TFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNM 391

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+++W ++I GY+ +G+  +AL  F+ ++ +G  P+++ F+GVL+AC H  LV +G 
Sbjct: 392 MNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGF 451

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI-SKMPMKPDKFLWASLLGGCR 440
            YF  I +K  +    +HY C+V LL R+G   EAE+ + +   +K D   W +LL  C 
Sbjct: 452 YYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACH 511

Query: 441 IHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           IH N +L K+  E + +++P +  TY  ++N++A A
Sbjct: 512 IHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKA 547



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 195/367 (53%), Gaps = 11/367 (2%)

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
           ++ D+   N++I+ ++K G  + AR LFD M QR+  SW+A++ GY+   + +E L L+R
Sbjct: 57  KDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFR 116

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            + + +++  N++  + VLS  +    ++ GK+ HGY++++G    + V +AL  MY +C
Sbjct: 117 NLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRC 176

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267
             ++ A QI D +   DV S+ +++    + G R E   +   ++   +  ++ T+  VL
Sbjct: 177 FHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVL 236

Query: 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV 327
             CA     +LG Q+H  + + G     F +S L+  Y KCG V N++K F+G+   ++V
Sbjct: 237 GLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVV 296

Query: 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           +WT+++  Y QNG  ++ L  F  +    T+P+   F  +L AC  A LV   L Y   +
Sbjct: 297 AWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNAC--ASLV--ALAYGDLL 352

Query: 388 KEKHGLTYTADHYAC---IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
             +  ++   +H      ++++ ++SG    + +V S M M  D   W +++ G   HG 
Sbjct: 353 HGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNM-MNRDVITWNAMICGYSHHG- 410

Query: 445 LDLAKRA 451
             L K+A
Sbjct: 411 --LGKQA 415



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 170/343 (49%), Gaps = 50/343 (14%)

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAV---SAIQCLRLGKEIHGYIM---RTGFDSDEV 195
            L L R+   F   + +  +L  V++ +   +  + LR GK IH  ++   +T  DSD  
Sbjct: 3   VLKLPRVTPAFSMYLPHPCSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDIT 62

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-S 254
             ++L ++Y KCG    AR++FD+M+ R+VVSW+A++  Y  +G   E   LF  L+   
Sbjct: 63  QINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLD 122

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
              PN + F  VL+ CAD    + GKQ HGY+ + G   + +  +AL+HMYS+C +V+++
Sbjct: 123 SAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSA 182

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT-- 372
            ++ + +P  D+ S+ S+++   ++G   +A +  + ++      D + +V VL  C   
Sbjct: 183 MQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQI 242

Query: 373 ---------HAGLVDKGLQY------------------------FHSIKEKHGLTYTADH 399
                    HA L+  GL +                        F  +++++ + +TA  
Sbjct: 243 RDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTA-- 300

Query: 400 YACIVDLLARSGRFHEAEDVISKMPM---KPDKFLWASLLGGC 439
              ++    ++G F E  ++ +KM +   +P++F +A LL  C
Sbjct: 301 ---VLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNAC 340


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/494 (32%), Positives = 262/494 (53%), Gaps = 58/494 (11%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKP 59
           LC   +L EAL+ L ++      P     SS++  C     L  GK++H++ LK+     
Sbjct: 277 LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 336

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             F+ + L+DMY  C  +   + +FD M +R +        G                  
Sbjct: 337 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI--------GL----------------- 371

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG- 178
                 W AMI+GY +     EAL L+  M+     ++N  T++ V+ A     C+R G 
Sbjct: 372 ------WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA-----CVRSGA 420

Query: 179 ----KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
               + IHG++++ G D D  V + L DMY + G I+ A +IF KM DRD+V+W  MI  
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 235 YFQEGRREEGFALFSEL-----------IKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           Y      E+   L  ++            +  ++PN+ T   +L +CA  +A   GK++H
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y  +          SALV MY+KCG ++ S+KVF+ +P+ ++++W  +I  Y  +G   
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +A++   +++  G +P+ + F+ V  AC+H+G+VD+GL+ F+ +K  +G+  ++DHYAC+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           VDLL R+GR  EA  +++ MP   +K   W+SLLG  RIH NL++ + AA+ L ++EP  
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720

Query: 463 PATYVTMANIYASA 476
            + YV +ANIY+SA
Sbjct: 721 ASHYVLLANIYSSA 734



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 201/421 (47%), Gaps = 41/421 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQT 82
           P    + +L++     + +E GK++H+H+   G+    V ++N L+++Y KCG+      
Sbjct: 95  PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 154

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD + ER+  S+N++IS      S E+               W               A
Sbjct: 155 VFDRISERNQVSWNSLISSLC---SFEK---------------WEM-------------A 183

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAI---QCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           L+ +R M + EN   + FTL SV++A S +   + L +GK++H Y +R G + +  + + 
Sbjct: 184 LEAFRCMLD-ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 241

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MYGK G +  ++ +      RD+V+W  ++    Q  +  E      E++  G+ P+
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVF 318
            FT + VL AC+       GK++H Y  + G  D  SF  SALV MY  C  V + ++VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLV 377
           +GM    +  W ++IAGY+QN    +AL  F  + +S G   +     GV+ AC  +G  
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +  +  H    K GL         ++D+ +R G+   A  +  KM  + D   W +++ 
Sbjct: 422 SRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMIT 479

Query: 438 G 438
           G
Sbjct: 480 G 480



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 138/271 (50%), Gaps = 7/271 (2%)

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W  ++   VR N   EA+  Y  M        N +   ++L AV+ +Q + LGK+IH ++
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDN-YAFPALLKAVADLQDMELGKQIHAHV 123

Query: 186 MRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            + G+  D V V + L ++Y KCG      ++FD++ +R+ VSW ++I       + E  
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEE---LGKQVHGYMTRIGYDPYSFAASAL 301
              F  ++   + P++FT   V+ AC++    E   +GKQVH Y  R G +  SF  + L
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTL 242

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V MY K G + +SK +       DLV+W ++++   QN    +ALEY   ++  G +PD 
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
                VL AC+H  ++  G +  H+   K+G
Sbjct: 303 FTISSVLPACSHLEMLRTG-KELHAYALKNG 332


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/427 (34%), Positives = 237/427 (55%), Gaps = 20/427 (4%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNL 114
           P  FIS        KC NI   + +  ++       D+   N ++    K   L  A  L
Sbjct: 3   PDFFISTLF-----KCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLL 57

Query: 115 FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN-----SVSNKFTLSSVLSAV 169
           F++M +RD  SW+ MI G+V+        D  R  Q F       S  + F+L  V+ A 
Sbjct: 58  FNKMEERDPVSWSVMIGGFVKNG------DYERCFQTFRELIRAGSKPDNFSLPFVIKAC 111

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
                L +G+ IH  +++ G   D  V S L DMY KCG I+ A+Q+FD+M  +D+V+ T
Sbjct: 112 RDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRT 171

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
            MI  Y + G+  E + LF ++ + G  P+      ++NACA   A    + VH Y+   
Sbjct: 172 VMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCAR 231

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
            Y       +A++ MY+KCG++++S+++F+ M + +++SW+++I  Y  +G   +ALE F
Sbjct: 232 RYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELF 291

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
            ++L SG  P+ I F+ +L AC+HAGLVD GLQ F  +   +G+     HY C+VDLL R
Sbjct: 292 HMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGR 351

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           +GR  +A  +I  M ++ D+ +W + LG CRIH  +DLA++AA+ L  ++ +NP  Y+ +
Sbjct: 352 AGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILL 411

Query: 470 ANIYASA 476
           +NIYA+A
Sbjct: 412 SNIYANA 418



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 176/366 (48%), Gaps = 35/366 (9%)

Query: 8   QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +R  +   +++   S P       +I+ CR    L  G+ +HS +  +G     F+ + L
Sbjct: 83  ERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTL 142

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG I +A+ LFD M ++D+ +   MI+G+ + G   ++  LFD+M +RD F   
Sbjct: 143 VDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQM-RRDGF--- 198

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                                       V +K  + ++++A + +  +   + +H Y+  
Sbjct: 199 ----------------------------VPDKVAMVTIVNACAKLGAMNKARLVHDYVCA 230

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
             +  D  + +A+ DMY KCGSI+ +R+IFD+M  ++V+SW+AMIG Y   G+  E   L
Sbjct: 231 RRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALEL 290

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYS 306
           F  ++ SGI PN  TF  +L AC+     + G Q+   M+   G  P     + +V +  
Sbjct: 291 FHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLG 350

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVF 364
           + G ++ + ++   M    D   W + +     +   D A +  +LLL   TQ P H + 
Sbjct: 351 RAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYIL 410

Query: 365 VGVLTA 370
           +  + A
Sbjct: 411 LSNIYA 416


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/494 (32%), Positives = 262/494 (53%), Gaps = 58/494 (11%)

Query: 5   LCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGFKP 59
           LC   +L EAL+ L ++      P     SS++  C     L  GK++H++ LK+     
Sbjct: 277 LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 336

Query: 60  GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
             F+ + L+DMY  C  +   + +FD M +R +        G                  
Sbjct: 337 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI--------GL----------------- 371

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG- 178
                 W AMI+GY +     EAL L+  M+     ++N  T++ V+ A     C+R G 
Sbjct: 372 ------WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA-----CVRSGA 420

Query: 179 ----KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
               + IHG++++ G D D  V + L DMY + G I+ A +IF KM DRD+V+W  MI  
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 235 YFQEGRREEGFALFSEL-----------IKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           Y      E+   L  ++            +  ++PN+ T   +L +CA  +A   GK++H
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y  +          SALV MY+KCG ++ S+KVF+ +P+ ++++W  +I  Y  +G   
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +A++   +++  G +P+ + F+ V  AC+H+G+VD+GL+ F+ +K  +G+  ++DHYAC+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           VDLL R+GR  EA  +++ MP   +K   W+SLLG  RIH NL++ + AA+ L ++EP  
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720

Query: 463 PATYVTMANIYASA 476
            + YV +ANIY+SA
Sbjct: 721 ASHYVLLANIYSSA 734



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 201/421 (47%), Gaps = 41/421 (9%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQT 82
           P    + +L++     + +E GK++H+H+   G+    V ++N L+++Y KCG+      
Sbjct: 95  PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 154

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD + ER+  S+N++IS      S E+               W               A
Sbjct: 155 VFDRISERNQVSWNSLISSLC---SFEK---------------WEM-------------A 183

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAI---QCLRLGKEIHGYIMRTGFDSDEVVWSA 199
           L+ +R M + EN   + FTL SV++A S +   + L +GK++H Y +R G + +  + + 
Sbjct: 184 LEAFRCMLD-ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 241

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MYGK G +  ++ +      RD+V+W  ++    Q  +  E      E++  G+ P+
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAASALVHMYSKCGNVENSKKVF 318
            FT + VL AC+       GK++H Y  + G  D  SF  SALV MY  C  V + ++VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQPDHIVFVGVLTACTHAGLV 377
           +GM    +  W ++IAGY+QN    +AL  F  + +S G   +     GV+ AC  +G  
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
            +  +  H    K GL         ++D+ +R G+   A  +  KM  + D   W +++ 
Sbjct: 422 SRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMIT 479

Query: 438 G 438
           G
Sbjct: 480 G 480



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 138/271 (50%), Gaps = 7/271 (2%)

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W  ++   VR N   EA+  Y  M        N +   ++L AV+ +Q + LGK+IH ++
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDN-YAFPALLKAVADLQDMELGKQIHAHV 123

Query: 186 MRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            + G+  D V V + L ++Y KCG      ++FD++ +R+ VSW ++I       + E  
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEE---LGKQVHGYMTRIGYDPYSFAASAL 301
              F  ++   + P++FT   V+ AC++    E   +GKQVH Y  R G +  SF  + L
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTL 242

Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
           V MY K G + +SK +       DLV+W ++++   QN    +ALEY   ++  G +PD 
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
                VL AC+H  ++  G +  H+   K+G
Sbjct: 303 FTISSVLPACSHLEMLRTG-KELHAYALKNG 332


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/471 (32%), Positives = 238/471 (50%), Gaps = 38/471 (8%)

Query: 10  RLKEALQILHQISHPSPS----IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN 65
           R  EA  I  ++ H         + S++  C     L+ GK V   +  + F+  +F+  
Sbjct: 91  RSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGT 150

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
            L+ MYA+C                                S E A  +F  M Q++  +
Sbjct: 151 ALITMYARCR-------------------------------SPENAAQVFGRMKQKNLIT 179

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W+A+I+ +  +    EAL  +RMMQ  E  + N+ T  S+L+  +    L     IH  I
Sbjct: 180 WSAIITAFADHGHCGEALRYFRMMQQ-EGILPNRVTFISLLNGFTTPSGLEELSRIHLLI 238

Query: 186 MRTGFDSDEVVWSALSDMYGKC--GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
              G D    + +AL ++YG+C  G ++ A  I  +M ++ + +W  +I  Y   GR  E
Sbjct: 239 TEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSRE 298

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
               +  L    I  +  TF  VLNAC    +   GK +H      G D      +AL +
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTN 358

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MYSKCG++EN++++F+ MP    VSW  ++  YAQ+G  ++ L+    + + G + + I 
Sbjct: 359 MYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGIT 418

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           FV VL++C+HAGL+ +G QYFHS+    G+    +HY C+VDLL R+G+  EAE  ISKM
Sbjct: 419 FVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKM 478

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           P +P+   WASLLG CR+H +LD  K AA  L E++P N +  V ++NIY+
Sbjct: 479 PSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYS 529



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 186/405 (45%), Gaps = 36/405 (8%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL +GK +HS ++ S     VF++  L++ Y KC                          
Sbjct: 25  ALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKC-------------------------- 58

Query: 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
                GSL  AR +FD MP R   +W +MIS Y    +  EA  +++ MQ+ E    ++ 
Sbjct: 59  -----GSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQH-EGERCDRV 112

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
           T  S+L A    + L+ GK +   I  T F+ D  V +AL  MY +C S   A Q+F +M
Sbjct: 113 TFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRM 172

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
             +++++W+A+I  +   G   E    F  + + GI PN  TF  +LN     +  E   
Sbjct: 173 KQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELS 232

Query: 281 QVHGYMTRIGYDPYSFAASALVHMYSKC--GNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           ++H  +T  G D  +  ++ALV++Y +C  G ++ ++ +   M    + +W  LI GY  
Sbjct: 233 RIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTL 292

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +G   +ALE ++ L       D + F+ VL ACT +  + +G +  HS   + GL     
Sbjct: 293 HGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVI 351

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
               + ++ ++ G    A  +   MP++     W  +L     HG
Sbjct: 352 VKNALTNMYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQHG 395



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 167/329 (50%), Gaps = 7/329 (2%)

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            E   +N  T  +VL++V     LR GK IH  +  +    D  V +AL + Y KCGS+ 
Sbjct: 3   LEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLT 62

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
           +AR++FD M  R V +W +MI  Y    R  E F +F  +   G R +  TF  +L+AC 
Sbjct: 63  DARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACV 122

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           +    + GK V   ++   ++   F  +AL+ MY++C + EN+ +VF  M + +L++W++
Sbjct: 123 NPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA 182

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA-CTHAGLVDKGLQYFHSIKEK 390
           +I  +A +G   +AL YF ++ + G  P+ + F+ +L    T +GL +  L   H +  +
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE--LSRIHLLITE 240

Query: 391 HGLTYTADHYACIVDLLAR--SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           HGL  T      +V++  R  +G    AE ++ +M  +     W  L+ G  +HG    A
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLHGRSREA 299

Query: 449 KRAAEAL-FEIEPENPATYVTMANIYASA 476
               + L  E  P +  T++++ N   S+
Sbjct: 300 LETYQRLQLEAIPVDKVTFISVLNACTSS 328



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 251 LIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310
           ++  G++ N  TF  VLN+  D  A   GK +H  +    +    F  +ALV+ Y+KCG+
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
           + +++KVF+GMP   + +W S+I+ Y+ +    +A   F+ +   G + D + F+ +L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEAEDVISKMPMKPD 428
           C +   +  G     SI E    ++  D +    ++ + AR      A  V  +M  K +
Sbjct: 121 CVNPENLQHGKHVRESISET---SFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-N 176

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475
              W++++     HG+   A R    + +  I P N  T++++ N + +
Sbjct: 177 LITWSAIITAFADHGHCGEALRYFRMMQQEGILP-NRVTFISLLNGFTT 224


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/511 (30%), Positives = 277/511 (54%), Gaps = 68/511 (13%)

Query: 2   IDILCNQRRLKEALQILHQISHPS----PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I  L    R++EAL ++ ++         + Y+S +  C +  +L  GK++H+ +  S  
Sbjct: 232 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 291

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +   ++++ L+++YAKCG                               S ++A+ +F+ 
Sbjct: 292 QIDPYVASALIELYAKCG-------------------------------SFKEAKRVFNS 320

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           +  R++ SWT +I G ++Y    ++++L+  M+  E    ++F L++++S       L L
Sbjct: 321 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCL 379

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT-------- 229
           G+++H   +++G +   VV ++L  +Y KCG +  A  +F  M +RD+VSWT        
Sbjct: 380 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 439

Query: 230 -----------------------AMIGRYFQEGRREEGFALFSELI-KSGIRPNAFTFAG 265
                                  AM+G Y Q G  E+G  ++S ++ +  + P+  T+  
Sbjct: 440 IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 499

Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
           +   CAD  A +LG Q+ G+  + G       A+A + MYSKCG +  ++K+F+ +   D
Sbjct: 500 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 559

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           +VSW ++I GY+Q+GM  +A + F+ +L  G +PD+I +V VL+ C+H+GLV +G  YF 
Sbjct: 560 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 619

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
            +   HG++   +H++C+VDLL R+G   EA+D+I KMPMKP   +W +LL  C+IHGN 
Sbjct: 620 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 679

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +LA+ AA+ +FE++  +  +Y+ +A IY+ A
Sbjct: 680 ELAELAAKHVFELDSPDSGSYMLLAKIYSDA 710



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 209/487 (42%), Gaps = 67/487 (13%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           + H      +  ++ C    AL   + +H  L + G    VF+ N LL  Y  CG +SDA
Sbjct: 15  LPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDA 74

Query: 81  QTLFD-EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           + L   +++E +V ++N M++G+ K GSL  A  LFD MP+RD  SW  ++S   R   P
Sbjct: 75  RRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSR---P 131

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                                  +    +  A+ C  L  ++ G   +  F  D  V +A
Sbjct: 132 -----------------------AGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETA 168

Query: 200 LSDMYGKCG-------------------------------SINEARQIFDKMVDRDVVSW 228
           L DM+ +CG                                I+ A + F+ M +RDVVSW
Sbjct: 169 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 228

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
             MI    Q GR  E   L  E+ + G+R ++ T+   L ACA   +   GKQ+H  + R
Sbjct: 229 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 288

Query: 289 I--GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
                DPY   ASAL+ +Y+KCG+ + +K+VFN +   + VSWT LI G  Q     K++
Sbjct: 289 SLPQIDPY--VASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 346

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           E F  +       D      +++ C +   +  G Q  HS+  K G          ++ L
Sbjct: 347 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISL 405

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466
            A+ G    AE V S M  + D   W S++      GN+    +A E    +   N  T+
Sbjct: 406 YAKCGDLQNAEFVFSSMSER-DIVSWTSMITAYSQIGNI---IKAREFFDGMATRNAITW 461

Query: 467 VTMANIY 473
             M   Y
Sbjct: 462 NAMLGAY 468



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 208/426 (48%), Gaps = 40/426 (9%)

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
           +   L+DM+ +CG +  A  LF +++   +   N+M++G+ K   ++ A   F++M +RD
Sbjct: 165 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 224

Query: 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
             SW  MI+   +  +  EAL L   M   +    +  T +S L+A + +  L  GK++H
Sbjct: 225 VVSWNMMIAALSQSGRVREALGLVVEMHR-KGVRLDSTTYTSSLTACARLFSLGWGKQLH 283

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242
             ++R+    D  V SAL ++Y KCGS  EA+++F+ + DR+ VSWT +IG   Q     
Sbjct: 284 AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFS 343

Query: 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
           +   LF+++    +  + F  A +++ C +     LG+Q+H    + G++     +++L+
Sbjct: 344 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLI 403

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE------------ 350
            +Y+KCG+++N++ VF+ M   D+VSWTS+I  Y+Q G   KA E+F+            
Sbjct: 404 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNA 463

Query: 351 --------------------LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF-HSIKE 389
                               +L +    PD + +V +   C   G    G Q   H++K 
Sbjct: 464 MLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKA 523

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
             GL          + + ++ GR  EA+ +   +  K D   W +++ G   HG   + K
Sbjct: 524 --GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK-DVVSWNAMITGYSQHG---MGK 577

Query: 450 RAAEAL 455
           +AA+  
Sbjct: 578 QAAKTF 583


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 227/374 (60%), Gaps = 3/374 (0%)

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVR-YNQPIEALDLYRMMQNFENSVSNKFTLS 163
            GS+   R +F  +P  D+F +T++I    + +N  I +L  Y  M    N   + +T +
Sbjct: 57  AGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMV-LSNVSPSNYTFT 115

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           SV+ + + +  L+ G+ +HG+++  GF  D  V +AL  +YGKCG +  AR++FDK+ +R
Sbjct: 116 SVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRER 175

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
            +V+W +MI  Y Q G  +E   LF  + ++G+ P++ TF  VL+ACA   A  LG  VH
Sbjct: 176 SIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVH 235

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            Y+   G D      ++L++MY +CGNV  +++VF+ M   ++V+WT++I+GY  NG   
Sbjct: 236 EYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGS 295

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
           +A+E F  + ++G  P+ I FV VL+AC HAGLV++G + F SI+E++ L    +H  C+
Sbjct: 296 QAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCL 355

Query: 404 VDLLARSGRFHEAEDVIS-KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462
           VD+L R+G   EA + I  ++P  P   +  ++LG C++H N DL  + AE L   EPEN
Sbjct: 356 VDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPEN 415

Query: 463 PATYVTMANIYASA 476
           PA YV ++NIYA A
Sbjct: 416 PAHYVILSNIYALA 429



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 147/266 (55%), Gaps = 33/266 (12%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +L  +S PS   ++S+I+ C    AL+ G+ VH H+   GF   V++   L+ +Y KCG+
Sbjct: 103 VLSNVS-PSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGD 161

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           + +A+ +FD+++ER + ++N+MISG+ + G  ++A  LFD M +                
Sbjct: 162 LINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG-------------- 207

Query: 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV 196
            +P  A                  T  SVLSA + +    LG  +H YI+  G D + V+
Sbjct: 208 VEPDSA------------------TFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVL 249

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
            ++L +MY +CG++++AR++FD M +R+VV+WTAMI  Y   G   +   LF E+ ++G+
Sbjct: 250 GTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGL 309

Query: 257 RPNAFTFAGVLNACADHAAEELGKQV 282
            PN+ TF  VL+ACA       G+++
Sbjct: 310 FPNSITFVAVLSACAHAGLVNEGRRL 335



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 159/311 (51%), Gaps = 18/311 (5%)

Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGR 234
           L L  ++H +I+ +G+     + + L ++    GSI+  RQIF  + + D   +T++I  
Sbjct: 25  LYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLI-- 82

Query: 235 YFQEGRREEGFAL-----FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
             +   +   F++     +S ++ S + P+ +TF  V+ +CAD +A + G+ VHG++   
Sbjct: 83  --KSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVH 140

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G+    +  +ALV +Y KCG++ N++KVF+ +    +V+W S+I+GY QNG   +A+  F
Sbjct: 141 GFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLF 200

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           + + ++G +PD   FV VL+AC H G    G  + H     +GL         ++++  R
Sbjct: 201 DRMKETGVEPDSATFVSVLSACAHLGAFSLGC-WVHEYIVGNGLDLNVVLGTSLINMYIR 259

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE----NPAT 465
            G   +A +V   M  + +   W +++ G   +G      +A E   E+       N  T
Sbjct: 260 CGNVSKAREVFDSMKER-NVVAWTAMISG---YGTNGYGSQAVELFHEMRRNGLFPNSIT 315

Query: 466 YVTMANIYASA 476
           +V + +  A A
Sbjct: 316 FVAVLSACAHA 326


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 248/446 (55%), Gaps = 32/446 (7%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           ++++  C +       K +HS +   G++  + + N L+  Y +CG  S  + +FDEM E
Sbjct: 46  TTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSE 105

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           ++V ++  +ISG ++G   E++  LF +M  RD                P++        
Sbjct: 106 KNVVTWTAVISGLSQGQFYEESLKLFGKM--RDG---------------PVDP------- 141

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                   N  T  S L A S +Q +R G++IHG + + G   D  + SAL DMY KCGS
Sbjct: 142 --------NSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGS 193

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           + +A +IF+   + D VS T ++    Q G  EE   +F +++K+G+  +    + +L  
Sbjct: 194 LEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGV 253

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
                +  LGKQ+H  + +  +    F  + L++MYSKCG++++S K+F  MP+ + VSW
Sbjct: 254 FGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSW 313

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            S+IA +A++G   +AL+ +E +   G  P  + F+ +L AC H GLV+KG+ +  S+ +
Sbjct: 314 NSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAK 373

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            +G+    +HYAC+VD++ R+G  +EA+  I ++P KP   +W +LLG C IHGN ++ K
Sbjct: 374 DYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGK 433

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            AA  LF   PE+PA Y+ +ANIY+S
Sbjct: 434 YAANQLFLQAPESPAPYILLANIYSS 459



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 188/366 (51%), Gaps = 17/366 (4%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS--NKFTLSSVLSAVSAIQCL 175
           MP +D  SW + ISG +  N  IE +      Q +E+ +   ++ TL++VL+A    +  
Sbjct: 1   MPMKDTISWNSRISGLLG-NGDIE-MGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFC 58

Query: 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
            + K IH  +   G++ +  V +AL   Y +CG  +  R++FD+M +++VV+WTA+I   
Sbjct: 59  YVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGL 118

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q    EE   LF ++    + PN+ T+   L AC+   A   G+Q+HG + ++G     
Sbjct: 119 SQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDL 178

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              SAL+ MYSKCG++E++ K+F      D VS T ++ G AQNG  +++++ F  ++K+
Sbjct: 179 CIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKN 238

Query: 356 GT--QPDHI-VFVGVLTACTHAGLVDKGLQYFHS--IKEKHGLTYTADHYACIVDLLARS 410
           G    P+ I   +GV    T   L   G Q  HS  IK+  G  Y  ++   ++++ ++ 
Sbjct: 239 GVVIDPNMISAILGVFGIDTSLAL---GKQ-IHSLIIKKSFGSNYFVNN--GLINMYSKC 292

Query: 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470
           G   ++  +   MP + +   W S++     HGN   A +  E +  +E   P     ++
Sbjct: 293 GDLDDSIKIFCWMPQR-NSVSWNSMIAAFARHGNGSRALQLYEEM-RLEGVWPTDVTFLS 350

Query: 471 NIYASA 476
            ++A A
Sbjct: 351 LLHACA 356



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 147/319 (46%), Gaps = 34/319 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   Y S +  C   +A+ EG+++H  +   G    + I + L+DMY+KCG++ DA  +
Sbjct: 141 PNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKI 200

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F+  +E D  S   ++ G  + G  E++  +F                            
Sbjct: 201 FESAEEVDEVSMTVILVGLAQNGFEEESIQVF---------------------------- 232

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
              +M++N    V +   +S++L        L LGK+IH  I++  F S+  V + L +M
Sbjct: 233 --VKMVKN--GVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINM 288

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG ++++ +IF  M  R+ VSW +MI  + + G       L+ E+   G+ P   TF
Sbjct: 289 YSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTF 348

Query: 264 AGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L+ACA     E G      M +  G  P     + +V M  + G +  +KK    +P
Sbjct: 349 LSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLP 408

Query: 323 -RPDLVSWTSLIAGYAQNG 340
            +P ++ W +L+   + +G
Sbjct: 409 EKPGILVWQALLGACSIHG 427


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 271/499 (54%), Gaps = 54/499 (10%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           +I+ C +  AL  G+KVH  L   GF   V++ N L+DMY K G I  A+ +FDEM  RD
Sbjct: 130 VIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRD 189

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMI----------SGYVRYN 137
           + S+N+M+SG+   G    +   F EM     + D F   + +          SG   + 
Sbjct: 190 LVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHC 249

Query: 138 QPIEA-LDLYRMMQ-------------NFENSVSNK------------------------ 159
           Q I + L+L  M+Q             ++   V N+                        
Sbjct: 250 QVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIP 309

Query: 160 --FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
              T+ ++L + S    L  GK IHG+ +R  F    V+ +AL DMYGKCG +  A  +F
Sbjct: 310 DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVF 369

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
           ++M ++++VSW  M+  Y Q  + +E   +F  ++   ++P+A T A VL A A+ A+  
Sbjct: 370 NQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRS 429

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
            GKQ+H Y+ ++G    +F ++A+V+MY+KCG+++ +++ F+GM   D+VSW ++I  YA
Sbjct: 430 EGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYA 489

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
            +G    ++++F  +   G +P+   FV +LTAC+ +GL+D+G  +F+S+K ++G+    
Sbjct: 490 IHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGI 549

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
           +HY C++DLL R+G   EA+  I +MP+ P   +W SLL   R H ++ LA+ AA  +  
Sbjct: 550 EHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILS 609

Query: 458 IEPENPATYVTMANIYASA 476
           ++ +N   YV ++N+YA A
Sbjct: 610 LKHDNTGCYVLLSNMYAEA 628



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 165/337 (48%), Gaps = 24/337 (7%)

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
           RD+C       GF + G +  A ++F++M   D F W  +I GY       EA+D Y  M
Sbjct: 63  RDLC-------GFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRM 115

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
           +  E   S+ FT   V+ A   +  L +G+++HG +++ GFD D  V + L DMY K G 
Sbjct: 116 E-CEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGF 174

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I  A ++FD+M  RD+VSW +M+  Y  +G        F E+++ G + + F     L A
Sbjct: 175 IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGA 234

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           C+       G ++H  + R   +      ++L+ MY KCG V+ +++VFN +   ++V+W
Sbjct: 235 CSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAW 294

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            ++I G  ++   DK +            PD I  + +L +C+ +G + +G         
Sbjct: 295 NAMIGGMQED---DKVI------------PDVITMINLLPSCSQSGALLEGKSIHGFAIR 339

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           K  L Y     A +VD+  + G    AE V ++M  K
Sbjct: 340 KMFLPYLVLETA-LVDMYGKCGELKLAEHVFNQMNEK 375



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 34/314 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P      +L+  C Q+ AL EGK +H       F P + +   L+DMY KCG +  A+ +
Sbjct: 309 PDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHV 368

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F++M E+++ S+NTM++ + +    ++A  +F  +                  N+P++  
Sbjct: 369 FNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHI-----------------LNEPLKP- 410

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         +  T++SVL AV+ +     GK+IH YIM+ G  S+  + +A+  M
Sbjct: 411 --------------DAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYM 456

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +  AR+ FD MV +DVVSW  MI  Y   G        FSE+   G +PN  TF
Sbjct: 457 YAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTF 516

Query: 264 AGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             +L AC+     + G      M    G DP       ++ +  + GN++ +K     MP
Sbjct: 517 VSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMP 576

Query: 323 R-PDLVSWTSLIAG 335
             P    W SL+A 
Sbjct: 577 LVPTARIWGSLLAA 590



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 12  KEALQ----ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           KEAL+    IL++   P     +S++    +  +  EGK++HS++   G     FISN +
Sbjct: 394 KEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAI 453

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           + MYAKCG++  A+  FD M  +DV S+NTMI  +   G    +   F EM
Sbjct: 454 VYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEM 504


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/480 (31%), Positives = 269/480 (56%), Gaps = 20/480 (4%)

Query: 12  KEALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL + H +    S P    +++ +  C     L  G K+H+ +  SG +  + + N L
Sbjct: 53  QQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSL 112

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY KC + + A+ +F+EM   +  S+ +++  +T  G  + AR +FD MP++   +W 
Sbjct: 113 IDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWN 172

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
            MISGY +       L L++ M+  E+S+  +++T S++++A+  +Q    G  +HG+I+
Sbjct: 173 IMISGYGQCGDVELCLGLFKKMR--EDSLQPDQWTFSALVNALCELQEPSYGYMMHGFII 230

Query: 187 RTGFDS-----------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
           ++G+D             +V W+A+ D + K G  +EA  +F    +++VVSWT+MI  Y
Sbjct: 231 KSGWDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGY 290

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            + G  E+  + F +++++ I+P+ FTF  VL+AC+  A    GK +HG +   G+  Y 
Sbjct: 291 ARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYV 350

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              + LV+MY+KCG+++ S   F  +   DLVSW +++ G   +G   +ALE +E ++ S
Sbjct: 351 DVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVAS 410

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G +PD + F+G+L  C+H+GL++KG   F S+   +GL+   +H  C+VDLL R G   +
Sbjct: 411 GMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQ 470

Query: 416 AEDVISKMPM--KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473
           A +++ +     + +  L  +LLG C  H  + +     E L   EP+   +YV ++N+Y
Sbjct: 471 ARELVDEYSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLY 530



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 196/439 (44%), Gaps = 85/439 (19%)

Query: 48  VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107
           +HSHL         F +   +   AK G I+ A+ LFDEM  +D  ++N M++ +++ G 
Sbjct: 1   MHSHL---------FQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGL 51

Query: 108 LEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167
            +QA  LF  M                                   NS  ++FT ++ LS
Sbjct: 52  HQQALCLFHHM--------------------------------RIANSRPDRFTFTATLS 79

Query: 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM------- 220
           A + +  LR G +IH  ++ +G  S   V ++L DMYGKC S   AR++F++M       
Sbjct: 80  ACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVS 139

Query: 221 ---------------VDRDV---------VSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
                          V R V         ++W  MI  Y Q G  E    LF ++ +  +
Sbjct: 140 WCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSL 199

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-----------SFAASALVHMY 305
           +P+ +TF+ ++NA  +      G  +HG++ + G+D               + +A++  +
Sbjct: 200 QPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAH 259

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            K G+   +  VF   P  ++VSWTS+I GYA+NG  ++AL +F  ++++  QPD   F 
Sbjct: 260 MKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFG 319

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            VL AC+    +  G +  H     +G     D    +V++ A+ G   +  +   K  +
Sbjct: 320 AVLHACSSLATLGHG-KMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDI-QGSNTAFKEIL 377

Query: 426 KPDKFLWASLLGGCRIHGN 444
             D   W ++L G  +HG+
Sbjct: 378 GKDLVSWNAMLFGLGMHGH 396



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 39/240 (16%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    + +++  C     L  GK +H  +   GF   V + N L++MYAKCG+I  + T 
Sbjct: 313 PDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTA 372

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM------PQRDNFSWTAMI---SGYV 134
           F E+  +D+ S+N M+ G    G   QA  L++EM      P +  F    M    SG +
Sbjct: 373 FKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLI 432

Query: 135 RYNQPI--EALDLYRMMQNFENSVSNKFTLS---------------------------SV 165
              Q +    + +Y + Q  E+ V     L                            ++
Sbjct: 433 EKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEAL 492

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           L A  A   +R+G  + G  ++      E+ +  LS++Y   G   EA  +   M D  V
Sbjct: 493 LGACFAHSEVRMGANL-GEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGV 551



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 2/154 (1%)

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F  ++ +   +K G + +++++F+ MP  D V+W +++A Y+Q G+  +AL  F  +  +
Sbjct: 6   FQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIA 65

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
            ++PD   F   L+AC   G + +G++  H+     G   +      ++D+  +      
Sbjct: 66  NSRPDRFTFTATLSACAGLGELRRGMK-IHAQVVVSGCQSSLPVGNSLIDMYGKCLSATS 124

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           A  V  +M +  ++  W SLL      G  D+A+
Sbjct: 125 ARRVFEEMSIM-NEVSWCSLLFAYTSSGLFDVAR 157


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 218/367 (59%), Gaps = 1/367 (0%)

Query: 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170
           AR +F+ +P RD  SW AM+  Y R     E   + R M      V N  TL+ VL+A  
Sbjct: 182 ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACR 241

Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTA 230
               L LG+ +  +    G ++D +V SAL  MY KCG I EAR++FD ++D+DVV+W A
Sbjct: 242 DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNA 301

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
           MI  Y Q G   E  +LF  + K+G+ P+  T AGVL+AC+   A ELG ++ GY +  G
Sbjct: 302 MITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRG 361

Query: 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350
                +  +ALV MY+KCG+++ + +VF  M   ++ SW +LI G A NG  D+A+++FE
Sbjct: 362 LYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFE 421

Query: 351 LLL-KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
           L+  + G +PD I F+GVL+AC HAGLV  G ++F+S+  +  +    +HY+C+VDLLAR
Sbjct: 422 LMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDLLAR 481

Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
           SG   E  D I K+P K D  +  +LL  CR   N+++ +R    + ++EP N   YV  
Sbjct: 482 SGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVS 541

Query: 470 ANIYASA 476
           + IYAS+
Sbjct: 542 SKIYASS 548



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 140/270 (51%), Gaps = 7/270 (2%)

Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
           H  + +   +S +    +L  +Y        AR++F+ +  RDVVSW AM+  Y + G  
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210

Query: 242 EEGFALFSELIKSG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            E   +  +++K G + PNA T A VL AC D     LG+ V  +    G +  S   SA
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSA 270

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY KCG +  +++VF+ +   D+V+W ++I GYAQNGM ++A+  F  + K+G  PD
Sbjct: 271 LVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPD 330

Query: 361 HIVFVGVLTACTHAGLVDKG--LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
            I   GVL+AC+  G ++ G  L  + S +  +   Y       +VD+ A+ G   +A +
Sbjct: 331 KITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVG---TALVDMYAKCGDLDKAIE 387

Query: 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
           V  KM  K +   W +L+ G   +G  D A
Sbjct: 388 VFRKMRCK-NVASWNALICGLAFNGQGDEA 416



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 188/429 (43%), Gaps = 83/429 (19%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+    + ++  CR    L  G+ V    KS+G +    + + L+ MY KCG I++A+ +
Sbjct: 228 PNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRV 287

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD + ++DV ++N MI+G+ + G   +A +LF  M +                       
Sbjct: 288 FDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKK----------------------- 324

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                         +K TL+ VLSA SA+  L LG E+ GY    G  ++  V +AL DM
Sbjct: 325 ---------AGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDM 375

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPNAF 261
           Y KCG +++A ++F KM  ++V SW A+I      G+ +E    F EL+++  G++P+  
Sbjct: 376 YAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHF-ELMRNEDGLKPDDI 434

Query: 262 TFAGVLNACADHAAEELGK---------------------------------QVHGYMTR 288
           TF GVL+AC      + GK                                 +V  ++ +
Sbjct: 435 TFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEK 494

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV-SWTSLIAG--YAQNGMPDKA 345
           I     +    AL+    KC NVE  ++V N + + +   SW  +++   YA +G  D +
Sbjct: 495 IPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDS 554

Query: 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405
            +    + + G        V     C+   +  K L+++   + +HG    AD    ++D
Sbjct: 555 AKMRGPMRERG--------VNKTPGCSWVEISGKVLEFYAGDEPQHG----ADDMYQVLD 602

Query: 406 LLARSGRFH 414
           LL    R  
Sbjct: 603 LLVDEMRLE 611



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
           A   L    H  + +I  + +     +L+ +YS   +   ++KVFNG+P  D+VSW +++
Sbjct: 142 APRHLSPVAHALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMM 201

Query: 334 AGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
             Y + GM  +       ++K G   P+ +    VL AC   G +  G ++     +  G
Sbjct: 202 KAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLG-RWVEEWSKSAG 260

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           +   +   + +V +  + G   EA  V   + +  D   W +++ G
Sbjct: 261 METDSLVGSALVGMYEKCGEIAEARRVFDSI-IDKDVVAWNAMITG 305


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 259/472 (54%), Gaps = 43/472 (9%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++L+  S+PS    S+++  C   ++L+ G + H+++          + + L  +Y+KCG
Sbjct: 155 EMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCG 214

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
                                           LE A   F  + +++  SWT+ +S    
Sbjct: 215 R-------------------------------LEDALKAFSRIREKNVISWTSAVSACGD 243

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
              P++ L L+  M + E+   N+FTL+S LS    I  L LG ++    ++ G++S+  
Sbjct: 244 NGAPVKGLRLFVEMIS-EDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLR 302

Query: 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE-----------GRREEG 244
           V ++L  +Y K G I EA + F++M D  +V+W AMI  + Q             R  E 
Sbjct: 303 VRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEA 362

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
             +FS+L +SG++P+ FT + VL+ C+   A E G+Q+H    + G+      +++L+ M
Sbjct: 363 LKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISM 422

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           Y+KCG++E + K F  M    +++WTS+I G++Q+GM  +AL  FE +  +G +P+ + F
Sbjct: 423 YNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTF 482

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           VGVL+AC+HAG+V + L YF  +++K+ +    DHY C+VD+  R GR  +A + I KM 
Sbjct: 483 VGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMN 542

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +P +F+W++ + GCR HGNL+L   A+E L  ++P++P TYV + N+Y SA
Sbjct: 543 YEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETYVLLLNMYLSA 594



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 203/426 (47%), Gaps = 45/426 (10%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           Y  L+Q C   R+    + VH H+  +G     F+ + L+++YAKCGN+ DA+ +F+ M 
Sbjct: 67  YVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMP 126

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            R+V ++ T++ GF +    + A ++F EM                              
Sbjct: 127 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEML----------------------------- 157

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
              +  S  + +TLS+VL A S++Q L+LG + H YI++   D D  V SAL  +Y KCG
Sbjct: 158 ---YAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCG 214

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + +A + F ++ +++V+SWT+ +      G   +G  LF E+I   I+PN FT    L+
Sbjct: 215 RLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALS 274

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
            C +  + ELG QV     + GY+      ++L+++Y K G +  + + FN M    +V+
Sbjct: 275 QCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVT 334

Query: 329 WTSLIAGYAQNGMPDK-----------ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
           W ++IAG+AQ     K           AL+ F  L +SG +PD      VL+ C+    +
Sbjct: 335 WNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAI 394

Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           ++G Q  H+   K G          ++ +  + G    A     +M  +     W S++ 
Sbjct: 395 EQGEQ-IHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTR-TMIAWTSMIT 452

Query: 438 GCRIHG 443
           G   HG
Sbjct: 453 GFSQHG 458



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 143/280 (51%), Gaps = 7/280 (2%)

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +HG++M+TG   +  V S L ++Y KCG++ +AR++F+ M  R+VV+WT ++  + Q  +
Sbjct: 86  VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQ 145

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            +    +F E++ +G  P+ +T + VL+AC+   + +LG Q H Y+ +   D  +   SA
Sbjct: 146 PKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSA 205

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L  +YSKCG +E++ K F+ +   +++SWTS ++    NG P K L  F  ++    +P+
Sbjct: 206 LCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPN 265

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
                  L+ C     ++ G Q   S+  K G          ++ L  +SG   EA    
Sbjct: 266 EFTLTSALSQCCEIPSLELGTQVC-SLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFF 324

Query: 421 SKMPMKPDKFLWASLLGGCR-----IHGNLDLAKRAAEAL 455
           ++M        W +++ G          NL   +R +EAL
Sbjct: 325 NRMD-DVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEAL 363


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 257/471 (54%), Gaps = 7/471 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +++A  +   I  P+   ++ +I    QN    E  ++ S +  +G KP  +    +L  
Sbjct: 168 VEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGA 227

Query: 71  YAKCGNISDAQ-----TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
               G + +A+     T+     +RD      +I+ + K G+LE+A  +F ++  +D  S
Sbjct: 228 CTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVS 287

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W++MI+ + +  Q   A+ L  M+ + E    N  T  +VL AV++++  + GKEIH  I
Sbjct: 288 WSSMIAAFAQSGQAKSAIQLL-MLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARI 346

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           ++ G+  D  + SAL  MY   G +  AR IF+   +RDVVSW++MI  Y Q        
Sbjct: 347 VQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARAL 406

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           +LF E+   G++PN+ TF   ++ACA   A   G Q+H  +  +G D     A+ALV++Y
Sbjct: 407 SLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLY 466

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
            KCG +E ++ VF GM + +L++WTS+   Y QNG   ++L+    +   G +PD IVFV
Sbjct: 467 GKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFV 526

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +L +C +AG + KGL Y++ + +  G+    +H  C+VD+L R+G+   AE +I+ M  
Sbjct: 527 AILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKF 586

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +     W  LL  C+ H +   A RAAE +F++EP+N   YV +++++ +A
Sbjct: 587 E-SSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAA 636



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 207/419 (49%), Gaps = 41/419 (9%)

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
           S  ++++  C   RAL EGK+VH          G+ +   LL                DE
Sbjct: 11  SACAAILTACSDLRALPEGKRVH----------GLVMRESLLQ---------------DE 45

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
             +  +   N +I  + + G  + A ++FD M  ++  +WT++IS +       +A+ L+
Sbjct: 46  RPDESLLE-NIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLF 104

Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQ-CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205
           R M        ++ T +S+L   S  +  L  GK +H +IM+TG++ D +V + + +MYG
Sbjct: 105 RKML-LSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYG 163

Query: 206 KCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
           KCG + +A  +FD + D +V SWT +I  Y Q G   E   L S + ++G++P+ +TF  
Sbjct: 164 KCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTT 223

Query: 266 VLNACADHAAEELGKQVH-GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           VL AC    A E  K +H   ++  G D  +   +AL+++Y KCG +E +  VF  +   
Sbjct: 224 VLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNK 283

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           D+VSW+S+IA +AQ+G    A++   L+   G +P+++ FV VL A T        L+ F
Sbjct: 284 DIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVT-------SLKAF 336

Query: 385 HSIKEKHGLTYTADHY--ACIVDLLAR---SGRFHEAEDVISKMPMKPDKFLWASLLGG 438
              KE H     A +    C+   L +   +  + E    I +   + D   W+S++ G
Sbjct: 337 QYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAG 395


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 261/470 (55%), Gaps = 14/470 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           L  A ++  ++  P    Y+SLI  FCR N   E   +    +   G KP     + +  
Sbjct: 165 LPAAKEVFDRMDSPDVVGYTSLISAFCR-NGEFELAAEALIQMLKQGLKPN---EHTMTT 220

Query: 70  MYAKCGNISDAQT---LFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           +   C  +   Q    L  +  ++ + V S   +I  +++ G  + A+ +FD +  ++  
Sbjct: 221 ILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVV 280

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW +M+  Y+R  +  EAL ++  M + E    N+F LS VL A  +I    LG+++H  
Sbjct: 281 SWCSMMQLYIRDGRLEEALQVFGDMIS-EGVDPNEFALSIVLGACGSIG---LGRQLHCS 336

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++    +D  V +AL  MYG+ G + E   + +K+ + D+VSWT  I   FQ G  E+ 
Sbjct: 337 AIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKA 396

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
            AL  ++   G  PN + F+ VL++CAD A+ + G Q H    ++G D      +AL++M
Sbjct: 397 IALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINM 456

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YSKCG + +++  F+ M   D+ SW SLI G+AQ+G  +KALE F  +  +G +PD   F
Sbjct: 457 YSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTF 516

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           +GVL  C H+G+V++G  +F  + +++  T    HYAC++D+L R+GRF EA  +I+ MP
Sbjct: 517 LGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 576

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +PD  +W +LL  C++H NLD+ K AA+ L E+   + A+YV M+NIYA
Sbjct: 577 FEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYA 626



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 200/415 (48%), Gaps = 43/415 (10%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C    AL  G++VHS    +GF    +I +CL++MY++CG++  A+ +FD M   DV  Y
Sbjct: 124 CADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGY 183

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            ++IS F + G  E A     +M                             + Q  +  
Sbjct: 184 TSLISAFCRNGEFELAAEALIQM-----------------------------LKQGLK-- 212

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWS-ALSDMYGKCGSINEA 213
             N+ T++++L+A   +    LG++IHGY++ + G  S  V  S AL D Y + G    A
Sbjct: 213 -PNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLA 267

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           + +FD +  ++VVSW +M+  Y ++GR EE   +F ++I  G+ PN F  + VL AC   
Sbjct: 268 KAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSI 327

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               LG+Q+H    +         ++AL+ MY + G VE  + + N +  PDLVSWT+ I
Sbjct: 328 G---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAI 384

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           +   QNG  +KA+     +   G  P+   F  VL++C     +D+G+Q FH +  K G 
Sbjct: 385 SANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGC 443

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
                    ++++ ++ G+   A      M    D   W SL+ G   HG+ + A
Sbjct: 444 DSEICTGNALINMYSKCGQMGSARLAFDVMHTH-DVTSWNSLIHGHAQHGDANKA 497



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 183/338 (54%), Gaps = 14/338 (4%)

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKF 160
             K G L  A +LFD MP+++  +WT+++SGY R  +P  AL ++  M   E+ V+ N F
Sbjct: 58  LVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADM--VESGVAPNDF 115

Query: 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220
             ++ L A + +  LR G+++H   +R GF  D  + S L +MY +CGS+  A+++FD+M
Sbjct: 116 ACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM 175

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280
              DVV +T++I  + + G  E       +++K G++PN  T   +L AC       LG+
Sbjct: 176 DSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQ 231

Query: 281 QVHGYMT-RIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           Q+HGY+  +IG    S ++++AL+  YS+ G  + +K VF+ +   ++VSW S++  Y +
Sbjct: 232 QIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIR 291

Query: 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398
           +G  ++AL+ F  ++  G  P+      VL AC   GL   G Q  H    KH L     
Sbjct: 292 DGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQ-LHCSAIKHDLITDIR 347

Query: 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
               ++ +  R+G   E E +++K+   PD   W + +
Sbjct: 348 VSNALLSMYGRTGLVEELEAMLNKIE-NPDLVSWTTAI 384



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 119/281 (42%), Gaps = 25/281 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +SS++  C    +L++G + H      G    +   N L++MY+KCG +  A+  
Sbjct: 410 PNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLA 469

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQP 139
           FD M   DV S+N++I G  + G   +A  +F +M     + D+ ++  ++ G       
Sbjct: 470 FDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMV 529

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--EIHGYIMRTGFDSDEVVW 197
            E    +R+M +        FT +    A       R G+  E    I    F+ D ++W
Sbjct: 530 EEGELFFRLMID-----QYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIW 584

Query: 198 SALSDMYGKCGSINEARQIFDKMV---DRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
             L        +++  +   D+++   DRD  S+  M   Y   G  E+   +   + ++
Sbjct: 585 KTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDET 644

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
           G++ +A         C   +  E+  +VH + +R    P S
Sbjct: 645 GVKKDA--------GC---SWIEINNEVHTFASRDMSHPNS 674


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 275/522 (52%), Gaps = 71/522 (13%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLK-SSGFKPGVFISNCLLDMY---------- 71
            P+P +Y++++  C    ALEEGK +HS +  + G K  V + N LL MY          
Sbjct: 118 QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAK 177

Query: 72  ----------------------AKCGNISDAQTLFDEMQ--------------------- 88
                                 A+ G+  +A  L+++M                      
Sbjct: 178 RLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLL 237

Query: 89  ---------------ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133
                          E D+   N +++ + +   L+ A  +F  +P+RD  SW+AMI+ +
Sbjct: 238 DQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAF 297

Query: 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193
              +   EA++ Y  MQ  E    N +T +SVL A +++  LR G+ +H  I+  G+   
Sbjct: 298 AETDLFDEAIEFYSKMQ-LEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT 356

Query: 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253
            V  +AL D+Y   GS++EAR +FD++ +RD   WT +IG Y ++G R     L+ E+  
Sbjct: 357 LVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKN 416

Query: 254 SGIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
           +   P     ++ V++ACA   A    +Q H  +   G       A++LV+MYS+ GN+E
Sbjct: 417 TTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLE 476

Query: 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372
           ++++VF+ M   D ++WT+LIAGYA++G    AL  ++ +   G +P  + F+ VL AC+
Sbjct: 477 SARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACS 536

Query: 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW 432
           HAGL ++G Q F SI+  + +     HY+CI+DLL+R+GR  +AE++I+ MP++P+   W
Sbjct: 537 HAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTW 596

Query: 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +SLLG  RIH ++  A  AA  + +++P +PA+YV ++N++A
Sbjct: 597 SSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHA 638



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 207/410 (50%), Gaps = 43/410 (10%)

Query: 37  RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96
           RQ + LE  +++H  + S      VF+ N ++  Y KCG+++ A+  FD +  ++  S+ 
Sbjct: 35  RQCQDLESVRQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWG 93

Query: 97  TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
           +M++ + + G                                   ALDLY+ M    N V
Sbjct: 94  SMLTAYAQNGHYRA-------------------------------ALDLYKRMDLQPNPV 122

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWSALSDMYGKCGSINEARQ 215
                 ++VL A ++I+ L  GK IH  I  T G   D ++ ++L  MY KCGS+ +A++
Sbjct: 123 ----VYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKR 178

Query: 216 IFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
           +F++M   R V SW AMI  Y Q G  EE   L+ ++    + P+  TF  VL+AC++  
Sbjct: 179 LFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLG 235

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334
             + G+++H  ++  G +      +AL+ MY++C  ++++ K+F  +PR D+VSW+++IA
Sbjct: 236 LLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIA 295

Query: 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394
            +A+  + D+A+E++  +   G +P++  F  VL AC   G +  G +  H     +G  
Sbjct: 296 AFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAG-RAVHDQILGNGYK 354

Query: 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
            T  +   +VDL    G   EA  +  ++  + D+ LW  L+GG    G+
Sbjct: 355 ITLVNGTALVDLYTSYGSLDEARSLFDQIENR-DEGLWTVLIGGYSKQGH 403



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 137/273 (50%), Gaps = 16/273 (5%)

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           YGKCGS+  AR  FD +  ++  SW +M+  Y Q G       L+  +    ++PN   +
Sbjct: 68  YGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVY 124

Query: 264 AGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
             VL ACA   A E GK +H  ++   G        ++L+ MY+KCG++E++K++F  M 
Sbjct: 125 TTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMS 184

Query: 323 -RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
            R  + SW ++IA YAQ+G  ++A+  +E +     +P    F  VL+AC++ GL+D+G 
Sbjct: 185 GRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQG- 240

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
           +  H++    G          ++ + AR     +A  +  ++P + D   W++++     
Sbjct: 241 RKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRR-DVVSWSAMIAA--- 296

Query: 442 HGNLDLAKRAAE--ALFEIEPENPATYVTMANI 472
               DL   A E  +  ++E   P  Y T A++
Sbjct: 297 FAETDLFDEAIEFYSKMQLEGVRP-NYYTFASV 328



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 4/165 (2%)

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
           F  + +V  Y KCG+V +++  F+ + R +  SW S++  YAQNG    AL+ ++   + 
Sbjct: 59  FLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYK---RM 115

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
             QP+ +V+  VL AC     +++G      I    GL         ++ + A+ G   +
Sbjct: 116 DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLED 175

Query: 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460
           A+ +  +M  +     W +++      G+ + A R  E + ++EP
Sbjct: 176 AKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-DVEP 219


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 251/445 (56%), Gaps = 36/445 (8%)

Query: 32  LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD 91
           L++ C      E G + H+H+   G++  VF++N L+ MY +                  
Sbjct: 106 LLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRF----------------- 148

Query: 92  VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                         G  + +R +F+ MP+R+  SW++M+  Y    +  E L L+  M N
Sbjct: 149 --------------GCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLN 194

Query: 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSIN 211
            E    N+    S+++A++ I       +    ++  G DSD+ V +A   MY +CG I+
Sbjct: 195 -EGIAPNR---GSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRID 250

Query: 212 EARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271
            AR+ F  ++D+D+V+WT+MI  Y Q         LF ++   GI P++ T   +++A +
Sbjct: 251 VARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVS 310

Query: 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTS 331
           + A+ +L + VHG +TR  +  +    +A++ +Y KCGN+E ++K F+ M   +L+SW++
Sbjct: 311 NLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWST 370

Query: 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391
           +I+GY  +G   +AL  F+ + K+  +PDHI FV VL+AC+H GL+ +G + F ++    
Sbjct: 371 MISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDF 429

Query: 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRA 451
           G+T   +HYAC+VDLL R+GR  EA+  I +MP+ PD  +W +LLG CRIH NL+ A+ A
Sbjct: 430 GVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETA 489

Query: 452 AEALFEIEPENPATYVTMANIYASA 476
           A  LF ++ ENP  Y+ ++NIYAS+
Sbjct: 490 ARHLFNLDAENPGRYILLSNIYASS 514



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 213/456 (46%), Gaps = 68/456 (14%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           ++ I   +Q   LE  K +H+ +  S   P +  S  L+  YA  G+IS A  LF     
Sbjct: 5   ANCIALIKQCVTLEALKSLHASILKSHLHPHLCTS--LIAQYASLGSISHAYALFSTSHS 62

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
            +V  +N +I  F+   +   +RN                            +L LY  M
Sbjct: 63  SNVFLWNHIIRAFS---NTPHSRN----------------------------SLRLYSRM 91

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                  +N FT   +L A   +    LG   H +++  G++SD  V ++L  MYG+ G 
Sbjct: 92  LQLGIQATN-FTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGC 150

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
            + +RQ+F++M +R+VVSW++M+G Y   GR EEG  LF  ++  GI PN      ++NA
Sbjct: 151 FDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNR---GSIVNA 207

Query: 270 CA----DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD 325
            A    +H A++  + V       G D      +A + MY++CG ++ +++ F G+   D
Sbjct: 208 MACIHREHEADDFCRVV----IDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKD 263

Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385
           LV+WTS+I  Y Q  +P  ALE F+ +   G  PD +  + ++ A ++       L  F 
Sbjct: 264 LVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSN-------LASFQ 316

Query: 386 SIKEKHGL---TYTADHYA---CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
             +  HG+   ++  +H A    ++DL  + G    A     +M  + +   W++++ G 
Sbjct: 317 LARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSAR-NLISWSTMISGY 375

Query: 440 RIHGNLDLAKRAAEALFE-----IEPENPATYVTMA 470
            +HG+     R A  LF+     I+P++ A  + ++
Sbjct: 376 GMHGH----GREALCLFDQMKASIKPDHIAFVMVLS 407



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 157/323 (48%), Gaps = 5/323 (1%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV-FISNCLLDMYAKC 74
           Q+  ++   +   +SS++     N   EEG  +   + + G  P    I N +  ++ + 
Sbjct: 156 QVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREH 215

Query: 75  GNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV 134
                 + + D   + D    N  +  + + G ++ AR  F  +  +D  +WT+MI  YV
Sbjct: 216 EADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYV 275

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
           + + PI AL+L++ M+     V +  TL S++ AVS +   +L + +HG I R+ F +  
Sbjct: 276 QADLPINALELFKQMK-LLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHI 334

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
            + +A+ D+Y KCG++  AR+ FD+M  R+++SW+ MI  Y   G   E   LF ++ K+
Sbjct: 335 ALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQM-KA 393

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVEN 313
            I+P+   F  VL+AC+       G +    M R  G  P +   + +V +  + G +  
Sbjct: 394 SIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSE 453

Query: 314 SKKVFNGMP-RPDLVSWTSLIAG 335
           ++     MP  PD   W +L+  
Sbjct: 454 AQAFIERMPITPDAGVWGALLGA 476



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 23/267 (8%)

Query: 3   DILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVF 62
           D+  N   L + +++L  +  P      SLI       + +  + VH  +  S FK  + 
Sbjct: 278 DLPINALELFKQMKLLGIV--PDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIA 335

Query: 63  ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP--- 119
           +   ++D+Y KCGN+  A+  FD M  R++ S++TMISG+   G   +A  LFD+M    
Sbjct: 336 LDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKASI 395

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           + D+ ++  ++S         E  + ++ M N +  V+ +    + +  +      R G+
Sbjct: 396 KPDHIAFVMVLSACSHGGLIAEGWECFKAM-NRDFGVTPRTEHYACMVDLLG----RAGR 450

Query: 180 --EIHGYIMRTGFDSDEVVWSALSDMYGKC-------GSINEARQIFDKMVDRDVVSWTA 230
             E   +I R     D  VW AL    G C        +   AR +F+ +   +   +  
Sbjct: 451 LSEAQAFIERMPITPDAGVWGAL---LGACRIHSNLETAETAARHLFN-LDAENPGRYIL 506

Query: 231 MIGRYFQEGRREEGFALFSELIKSGIR 257
           +   Y   G+R+E   + + +   G+R
Sbjct: 507 LSNIYASSGKRKEADDIRALMKSRGVR 533


>gi|297798862|ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313151|gb|EFH43574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 255/457 (55%), Gaps = 12/457 (2%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD------AQT 82
           Y S++    Q+  L E  K+   +   GF P   +   LL +  + G+ S       A  
Sbjct: 116 YCSIVNCYCQDGLLSEAMKLLKEMYFYGFVPKSELVASLLALCTRMGSSSKVARMLHALV 175

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYV-RYNQPIE 141
           L DE  +  V     ++  + K      A ++FD+M  ++  SWTAMISG V  YN  + 
Sbjct: 176 LVDERIQESVLLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEV- 234

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAI-QCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            +D +R MQ  EN   N+ TL SVL A   +   LRL KEIHG+  R GF SD+ + +A 
Sbjct: 235 GIDFFRAMQR-ENLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAF 293

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
             MY +CGS++ +R +F+    RDVV W++MI  Y + G   E   L S++ K G  PN+
Sbjct: 294 MTMYCRCGSVSLSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNS 353

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T   V++AC   A+ ++   VH  + + G+  +   ++AL+ MY+KCG++  +++VF  
Sbjct: 354 VTLLAVVSACTHSASLKIASTVHSQILKCGFMSHILLSNALIDMYAKCGSLPAAREVFYE 413

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           +   DLVSW+S+I  Y  +G   +ALE F+ ++K+G + D + F+ VL+AC HAGLV++ 
Sbjct: 414 LNEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKAGHEVDGMAFLAVLSACNHAGLVEEA 473

Query: 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
              F    + H +  T +HY+C ++LL R G+  +A +V   MPMKP   +W+SLL  C 
Sbjct: 474 QTIFTQAGKYH-MPVTLEHYSCYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSACE 532

Query: 441 IHGNLDLA-KRAAEALFEIEPENPATYVTMANIYASA 476
            HG LD+A K  A  L + EP+NPA YV ++ I+  +
Sbjct: 533 THGRLDVACKIIANELMKSEPDNPANYVLLSKIHTES 569



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 177/369 (47%), Gaps = 16/369 (4%)

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F    +RD    N++IS + K      AR +FDEM QRD  S+ ++++ Y +     EA+
Sbjct: 74  FKSGADRDTVVSNSLISMYAKLSRAYAARKVFDEMLQRDTVSYCSIVNCYCQDGLLSEAM 133

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG------KEIHGYIMRTGFDSDEVVW 197
            L + M  +       F   S L A     C R+G      + +H  ++      + V+ 
Sbjct: 134 KLLKEMYFY------GFVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERIQESVLL 187

Query: 198 S-ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
           S AL DMY K      A  +FD+M  ++ VSWTAMI         E G   F  + +  +
Sbjct: 188 STALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQRENL 247

Query: 257 RPNAFTFAGVLNACADHA-AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           RPN  T   VL AC +      L K++HG+  R G+       +A + MY +CG+V  S+
Sbjct: 248 RPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMTMYCRCGSVSLSR 307

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
            +F      D+V W+S+I+GYA+NG   +A+     + K G++P+ +  + V++ACTH+ 
Sbjct: 308 LLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSACTHSA 367

Query: 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASL 435
            + K     HS   K G          ++D+ A+ G    A +V  ++  K D   W+S+
Sbjct: 368 SL-KIASTVHSQILKCGFMSHILLSNALIDMYAKCGSLPAAREVFYELNEK-DLVSWSSM 425

Query: 436 LGGCRIHGN 444
           +    +HG+
Sbjct: 426 INAYGLHGH 434



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 12/325 (3%)

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT--LSSVLSAVSAIQ-CLRL 177
           R N      + G V      EAL LY++  N     +N FT  L SV+ A S  Q    L
Sbjct: 8   RLNLELGNKLKGLVSGQLHDEALRLYKL--NIHPLGTNGFTAILPSVIKACSFQQEPFLL 65

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G ++H    ++G D D VV ++L  MY K      AR++FD+M+ RD VS+ +++  Y Q
Sbjct: 66  GAQLHCLCFKSGADRDTVVSNSLISMYAKLSRAYAARKVFDEMLQRDTVSYCSIVNCYCQ 125

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH-AAEELGKQVHGYMT---RIGYDP 293
           +G   E   L  E+   G  P +   A +L  C    ++ ++ + +H  +    RI    
Sbjct: 126 DGLLSEAMKLLKEMYFYGFVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERI--QE 183

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
               ++AL+ MY K  +   +  VF+ M   + VSWT++I+G   N   +  +++F  + 
Sbjct: 184 SVLLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQ 243

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           +   +P+ +  + VL AC   G   + ++  H    +HG        A  + +  R G  
Sbjct: 244 RENLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMTMYCRCGSV 303

Query: 414 HEAEDVISKMPMKPDKFLWASLLGG 438
             +  +     ++ D  +W+S++ G
Sbjct: 304 SLSRLLFETSKVR-DVVMWSSMISG 327


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 260/468 (55%), Gaps = 6/468 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           +  AL++  +I       ++S++    QNR   E       +  +GF P       LL  
Sbjct: 315 VDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374

Query: 71  YAKCGNISDAQTL----FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
               G + + + +      +  + D+   NT++  + K  S+E +  +FD M  +D+ SW
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSW 434

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
           T +I+ Y + ++  EA+  +R  Q  E    +   + S+L A S ++ + L K++H Y +
Sbjct: 435 TTIIACYAQSSRYSEAIGKFRTAQK-EGIKVDPMMMGSILEACSGLKSISLLKQVHSYAI 493

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R G   D ++ + + D+YG+CG +  A  IF+ +  +D+V+WT+M+  + + G   E  A
Sbjct: 494 RNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVA 552

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF +++ +GI+P++    G+L A A  ++   GK++HG++ R  +       S+LV MYS
Sbjct: 553 LFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYS 612

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
            CG++  + KVF+     D+V WT++I     +G   +A+  F+ +L++G  PDH+ F+ 
Sbjct: 613 GCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLA 672

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           +L AC+H+ LVD+G  Y   +  K+ L    +HYAC+VDLL RSG+  EA   I  MP++
Sbjct: 673 LLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLE 732

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           P   +W +LLG CRIH N +LA  A + L E+EP+NP  YV ++N++A
Sbjct: 733 PKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFA 780



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 215/441 (48%), Gaps = 40/441 (9%)

Query: 5   LCNQRRLKEALQILHQISH----PSPSI-YSSLIQFCRQNRALEEGKKVHSHLKSSGF-- 57
           LC    L+EAL+ L   S     P P+  Y  ++      RA+ EG+++H+H  ++G   
Sbjct: 29  LCKDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALG 88

Query: 58  -KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
                F++  LL MY KCG + DA  LFD M  R V S+N +I      G   +A  ++ 
Sbjct: 89  DDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYR 148

Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
            M                R ++P+              +  +  TL+SVL A  A    R
Sbjct: 149 AM----------------RASEPVAG------------AAPDGCTLASVLKACGAEGDGR 180

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RDVVSWTAMIGRY 235
            G E+HG  +++G D   +V +AL  MY KCG ++ A ++F+ M D RDV SW + I   
Sbjct: 181 CGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGC 240

Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
            Q G   E   LF  +   G   N++T  GVL  CA+ A    G+++H  + + G + ++
Sbjct: 241 VQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTE-FN 299

Query: 296 FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355
              +AL+ MY++CG V+++ +VF  +   D +SW S+++ Y QN +  +A+++F  ++++
Sbjct: 300 IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQN 359

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415
           G  PDH   V +L+A  H G +  G +  H+   K  L         ++D+  +      
Sbjct: 360 GFNPDHACIVSLLSAVGHLGRLINGRE-VHAYAVKQRLDSDLQIANTLMDMYIKCYSVEC 418

Query: 416 AEDVISKMPMKPDKFLWASLL 436
           +  V  +M +K D   W +++
Sbjct: 419 SARVFDRMRIK-DHVSWTTII 438



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 208/479 (43%), Gaps = 86/479 (17%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     +S+++ C        G +VH     SG      ++N L+ MYAKCG        
Sbjct: 161 PDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCG-------- 212

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEA 142
                                   L+ A  +F+ M   RD  SW + ISG V+    +EA
Sbjct: 213 -----------------------LLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEA 249

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           LDL+R MQ+   S+ N +T   VL   + +  L  G+E+H  +++ G + + +  +AL  
Sbjct: 250 LDLFRRMQSDGFSM-NSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLV 307

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY +CG ++ A ++F ++ D+D +SW +M+  Y Q     E    F E++++G  P+   
Sbjct: 308 MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHAC 367

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
              +L+A         G++VH Y  +   D     A+ L+ MY KC +VE S +VF+ M 
Sbjct: 368 IVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT---------- 372
             D VSWT++IA YAQ+    +A+  F    K G + D ++   +L AC+          
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQ 487

Query: 373 ------HAGLVD------------------KGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
                   GL+D                    L  F  + +K  +T+T+     +V+  A
Sbjct: 488 VHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTS-----MVNCFA 542

Query: 409 RSGRFHEAEDVISKM---PMKPDKFLWASLLG----------GCRIHGNLDLAKRAAEA 454
            +G  HEA  +  KM    ++PD      +LG          G  IHG L   K   E 
Sbjct: 543 ENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEG 601



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 12/204 (5%)

Query: 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTR---IGYDPYSFAASALVHMYSKCGNVENS 314
           P    +  VL+  A   A   G+Q+H +      +G D   F A+ L+ MY KCG + ++
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS----GTQPDHIVFVGVLTA 370
            ++F+GMP   + SW +LI     +G   +A+  +  +  S    G  PD      VL A
Sbjct: 113 HRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKF 430
           C   G    G +  H +  K GL  +      +V + A+ G    A  V   M    D  
Sbjct: 173 CGAEGDGRCGSE-VHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVA 231

Query: 431 LWASLLGGCRIHG----NLDLAKR 450
            W S + GC  +G     LDL +R
Sbjct: 232 SWNSAISGCVQNGMFLEALDLFRR 255


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 252/453 (55%), Gaps = 34/453 (7%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P     SSL+           GK++H +      +  +FI+N L+DMYAK G        
Sbjct: 319 PGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFG-------- 370

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                    CS              E+A  +F+ +  R+  SW AMI+   +     EA 
Sbjct: 371 ---------CS--------------EKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAF 407

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            L   MQ       N FTL ++L A S +  +++GK+IH + +R    SD  V +AL D+
Sbjct: 408 RLVIEMQK-NGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDV 466

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCG +N AR IFD+  ++D VS+  +I  Y Q     E   LF ++  +GI  +A +F
Sbjct: 467 YAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSF 525

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            G L+AC++ +A + GK++HG + +   D + F A++L+ +Y+K G ++ + K+FN + +
Sbjct: 526 MGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQ 585

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+ SW ++I GY  +G  D A E F+L+   G + DH+ ++ VL+ C+H GLVD+G +Y
Sbjct: 586 KDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKY 645

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           F  +  ++ +     HYAC+VDLL R+G+  E+ ++I  MP + +  +W +LLG CRIHG
Sbjct: 646 FSQMIAQN-IKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHG 704

Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +++LA+ AAE LFE++PEN   Y  + N+Y+ +
Sbjct: 705 DIELARLAAEHLFELKPENSGYYTLLRNMYSES 737



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 208/418 (49%), Gaps = 35/418 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S++  C   R    G  VH  +   G    V + N L+DMY K G++  +  +F+ MQE+
Sbjct: 225 SILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEK 284

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +  S+N+ I  F   G        F E                       + L+++R+M 
Sbjct: 285 NEVSWNSAIGCFAHAG--------FHE-----------------------DVLEMFRLMS 313

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
              +      TLSS+L A+  +    LGKE+HGY +R   +SD  + + L DMY K G  
Sbjct: 314 E-HDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCS 372

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A  IF+ +  R+VVSW AMI    Q G   E F L  E+ K+G  PN+FT   +L AC
Sbjct: 373 EKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPAC 432

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +  A+ ++GKQ+H +  R       F ++AL+ +Y+KCG +  ++ +F+   + D VS+ 
Sbjct: 433 SRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSEK-DGVSYN 491

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           +LI GY+Q+    ++L  F+ +  +G + D + F+G L+AC++     +G +  H +  K
Sbjct: 492 TLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQG-KEIHGVLVK 550

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             L         ++D+  + G    A  + +++  K D   W +++ G  +HG +D+A
Sbjct: 551 RLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQK-DVASWNTMILGYGMHGQIDVA 607



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 177/380 (46%), Gaps = 34/380 (8%)

Query: 44  EGKKVHSH-LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102
           +G ++H+  L+       VF  N L+  YA CG  +DA+ +FDEM  RDV S+N+++S  
Sbjct: 136 KGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSAL 195

Query: 103 TKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
              G LE A+                 + G +R   P+                 N  +L
Sbjct: 196 LTNGMLEDAKR---------------AVVGMMRSGVPV-----------------NVASL 223

Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
            S+L A    +    G  +HG +++ G +S   + +AL DMYGK G +  +  +F+ M +
Sbjct: 224 VSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQE 283

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
           ++ VSW + IG +   G  E+   +F  + +  + P + T + +L A  D     LGK++
Sbjct: 284 KNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKEL 343

Query: 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP 342
           HGY  R   +   F A+ L+ MY+K G  E +  +F  +   ++VSW ++IA   QNG  
Sbjct: 344 HGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAE 403

Query: 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC 402
            +A      + K+G  P+    V +L AC+    V  G Q  H+   +  L         
Sbjct: 404 AEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQ-IHAWSIRRSLMSDLFVSNA 462

Query: 403 IVDLLARSGRFHEAEDVISK 422
           ++D+ A+ G+ + A  +  +
Sbjct: 463 LIDVYAKCGQLNLARYIFDR 482



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 128/275 (46%), Gaps = 10/275 (3%)

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAI-QCLRLG 178
           R  F W ++         P EAL +Y RM+++        F  +   +A  A  +    G
Sbjct: 78  RSAFLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKG 137

Query: 179 KEIHGYIMRTGFD-SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
            E+H   +R G   +D    + L   Y  CG   +AR++FD+M  RDVVSW +++     
Sbjct: 138 AELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLT 197

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  E+       +++SG+  N  +   +L AC     E  G  VHG + + G +     
Sbjct: 198 NGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNL 257

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +ALV MY K G++E+S  VFNGM   + VSW S I  +A  G  +  LE F L+ +   
Sbjct: 258 GNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDV 317

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
            P  +    +L A     LVD G  YFH  KE HG
Sbjct: 318 TPGSVTLSSLLPA-----LVDLG--YFHLGKELHG 345



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 51/233 (21%)

Query: 13  EALQILHQ-----ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           E+L +  Q     I H + S    L   C    A ++GK++H  L         F++N L
Sbjct: 505 ESLHLFQQMRLAGIEHDAVSFMGCL-SACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSL 563

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDN 123
           LD+Y K G +  A  +F+ + ++DV S+NTMI G+   G ++ A  LFD M     + D+
Sbjct: 564 LDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDH 623

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            S+ A                                    VLS  S    +  GK+   
Sbjct: 624 VSYIA------------------------------------VLSVCSHGGLVDRGKKYFS 647

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM---VDRDVVSWTAMIG 233
            ++       ++ ++ + D+ G+ G ++E+ +I   M    + DV  W A++G
Sbjct: 648 QMIAQNIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDV--WGALLG 698


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 238/434 (54%), Gaps = 35/434 (8%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  G ++HS    +G     ++    + +Y+KCG I  A TLF E +  D+ +YN MI G
Sbjct: 237 LRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHG 296

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           +T  G  E + +LF E+          M+SG                          K  
Sbjct: 297 YTSNGETELSLSLFKEL----------MLSG-------------------------AKLK 321

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
            S+++S V     L L   IHGY +++ F S   V +AL+ +Y K   I  AR++FD+  
Sbjct: 322 SSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESP 381

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
           ++ + SW AMI  Y Q G  E+  +LF E+  S   PN  T   +L+ACA   A  LGK 
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKW 441

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           VH  +    ++   + ++AL+ MY+KCG++  ++++F+ MP+ + V+W ++I+GY  +G 
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGH 501

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
             +AL  F  +L SG  P  + F+ VL AC+HAGLV +G + F+S+  ++G   +  HYA
Sbjct: 502 GQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYA 561

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C+VD+L R+G    A   I  MP++P   +W +LLG CRIH + +LA+  +E LFE++P+
Sbjct: 562 CVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPD 621

Query: 462 NPATYVTMANIYAS 475
           N   +V ++NI+++
Sbjct: 622 NVGYHVLLSNIHSA 635



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 211/439 (48%), Gaps = 16/439 (3%)

Query: 14  ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL-KSSGFKP-------GVFISN 65
           A  I   +  P   +++ L++    N +      V +HL KS+  KP        +  ++
Sbjct: 71  ARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS 130

Query: 66  CLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS 125
              D  A C  +   Q + D      +   N ++  + K   +E AR +FD MP++D   
Sbjct: 131 GFRDDRAGC--VIHGQAIVDGCDSELLLGSN-IVKMYFKFWRVEDARKVFDRMPEKDTIL 187

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           W  MISGY +    +E++ ++R + N   +  +  TL  +L AV+ +Q LRLG +IH   
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
            +TG  S + V +    +Y KCG I  A  +F +    D+V++ AMI  Y   G  E   
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSL 307

Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
           +LF EL+ SG +  + T   ++   + H    L   +HGY  +  +  ++  ++AL  +Y
Sbjct: 308 SLFKELMLSGAKLKSSTLVSLV-PVSGHLM--LIYAIHGYSLKSNFLSHTSVSTALTTVY 364

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           SK   +E+++K+F+  P   L SW ++I+GY QNG+ + A+  F  +  S   P+ +   
Sbjct: 365 SKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTIT 424

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
            +L+AC   G +  G ++ H +        +      ++ + A+ G   EA  +   MP 
Sbjct: 425 CILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP- 482

Query: 426 KPDKFLWASLLGGCRIHGN 444
           K ++  W +++ G  +HG+
Sbjct: 483 KKNEVTWNTMISGYGLHGH 501



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 176/385 (45%), Gaps = 22/385 (5%)

Query: 65  NCLLDMYAKCGNISD-----AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
           N  LD++ +  +IS      AQ +    +  D+     +    +  G++  AR++F  + 
Sbjct: 21  NNFLDLFKRSTSISHLAQTHAQIVLHGFRN-DISLLTKLTQRLSDLGAIYYARDIFLSVQ 79

Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
           + D F +  ++ G+     P  +L ++  ++   +   N  T +  +SA S  +  R G 
Sbjct: 80  RPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGC 139

Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
            IHG  +  G DS+ ++ S +  MY K   + +AR++FD+M ++D + W  MI  Y +  
Sbjct: 140 VIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNE 199

Query: 240 RREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
              E   +F +LI +S  R +  T   +L A A+     LG Q+H   T+ G   + +  
Sbjct: 200 MYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL 259

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +  + +YSKCG ++ +  +F    RPD+V++ ++I GY  NG  + +L  F+ L+ SG +
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD---HYACIVDLLARSGRFHE 415
                 V ++    H  L          I   HG +  ++   H +    L     + +E
Sbjct: 320 LKSSTLVSLVPVSGHLML----------IYAIHGYSLKSNFLSHTSVSTALTTVYSKLNE 369

Query: 416 AEDVISKMPMKPDKFL--WASLLGG 438
            E         P+K L  W +++ G
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISG 394


>gi|302822438|ref|XP_002992877.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
 gi|300139325|gb|EFJ06068.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
          Length = 630

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 246/451 (54%), Gaps = 37/451 (8%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           I +SL+  C + +ALEEG+++H HL   GF+  + +   LL MY KCG            
Sbjct: 56  IVTSLVAACTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCG------------ 103

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
                              SL+ A+ +F+ M  +D F+W+++IS Y        A+ LYR
Sbjct: 104 -------------------SLDDAKRVFEGMEIKDLFTWSSIISVYAHAGWGEMAVVLYR 144

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            M + E    N  T +  +   +++  L  G+ IH  I+ +    D+V+  +L +MY KC
Sbjct: 145 RMIS-EGVEPNVVTFACAVGGCASVAGLADGRAIHQRILVSKVLQDDVLQDSLLNMYLKC 203

Query: 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SGIRPNAFTFAGV 266
             + E+R++F+ M  R+V S+TAMI  Y Q G + E   L S + K   I PN +TFA +
Sbjct: 204 DEMVESRKVFEGMKARNVRSYTAMISAYVQAGEQAEALELVSRMSKVEAIEPNPYTFATI 263

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L A       E G++VH ++   G+D      +ALV MY KCG++  ++KVF+ M   ++
Sbjct: 264 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVIQNALVTMYGKCGSLVEAQKVFDSMTARNV 323

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH- 385
           +SWTS+IA YAQ+G P +AL  F+   +   +P  + F   L AC   G +D+G +  H 
Sbjct: 324 ISWTSMIAAYAQHGNPQEALNLFK---RMDVEPSGVSFSSALNACALLGALDEGREIHHR 380

Query: 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNL 445
           S+   HG+    +HY C+VD+L RSGR  +AE+++  MP + D   W +LL GC+ HG+L
Sbjct: 381 SLMMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKHHGDL 440

Query: 446 DLAKRAAEALFEIEPENPATYVTMANIYASA 476
           D  +RAA  +FE+ P     YV ++N+YA+A
Sbjct: 441 DRGERAARKVFELAPAETLPYVFLSNMYAAA 471



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 185/360 (51%), Gaps = 13/360 (3%)

Query: 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV 165
           G    A+ +FD +  +++ ++  MI+  VR  +P++ L+L+  M+     V +KF ++S+
Sbjct: 2   GKFLDAKAVFDFIASKNDRTYAIMIAACVRKGRPLQVLELWGEMEE-RGIVMDKFIVTSL 60

Query: 166 LSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV 225
           ++A + +Q L  G+++H +++  GF +D  + +AL  MYGKCGS+++A+++F+ M  +D+
Sbjct: 61  VAACTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCGSLDDAKRVFEGMEIKDL 120

Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
            +W+++I  Y   G  E    L+  +I  G+ PN  TFA  +  CA  A    G+ +H  
Sbjct: 121 FTWSSIISVYAHAGWGEMAVVLYRRMISEGVEPNVVTFACAVGGCASVAGLADGRAIHQR 180

Query: 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345
           +             +L++MY KC  +  S+KVF GM   ++ S+T++I+ Y Q G   +A
Sbjct: 181 ILVSKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGMKARNVRSYTAMISAYVQAGEQAEA 240

Query: 346 LEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404
           LE    + K    +P+   F  +L A    G ++KG +    +  + G          +V
Sbjct: 241 LELVSRMSKVEAIEPNPYTFATILGAVEGLGNLEKGRKVHRHLASR-GFDTNVVIQNALV 299

Query: 405 DLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN----LDLAKRAAEALFEIEP 460
            +  + G   EA+ V   M  + +   W S++     HGN    L+L KR      ++EP
Sbjct: 300 TMYGKCGSLVEAQKVFDSMTAR-NVISWTSMIAAYAQHGNPQEALNLFKR-----MDVEP 353



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 137/283 (48%), Gaps = 44/283 (15%)

Query: 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
           CG   +A+ +FD +  ++  ++  MI    ++GR  +   L+ E+ + GI  + F    +
Sbjct: 1   CGKFLDAKAVFDFIASKNDRTYAIMIAACVRKGRPLQVLELWGEMEERGIVMDKFIVTSL 60

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           + AC    A E G+Q+H ++  +G+       +AL+ MY KCG+++++K+VF GM   DL
Sbjct: 61  VAACTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCGSLDDAKRVFEGMEIKDL 120

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVD------- 378
            +W+S+I+ YA  G  + A+  +  ++  G +P+ + F   +  C   AGL D       
Sbjct: 121 FTWSSIISVYAHAGWGEMAVVLYRRMISEGVEPNVVTFACAVGGCASVAGLADGRAIHQR 180

Query: 379 ----KGLQ-----------------------YFHSIKEKHGLTYTADHYACIVDLLARSG 411
               K LQ                        F  +K ++  +YTA     ++    ++G
Sbjct: 181 ILVSKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGMKARNVRSYTA-----MISAYVQAG 235

Query: 412 RFHEAEDVISKM----PMKPDKFLWASLLGGCRIHGNLDLAKR 450
              EA +++S+M     ++P+ + +A++LG     GNL+  ++
Sbjct: 236 EQAEALELVSRMSKVEAIEPNPYTFATILGAVEGLGNLEKGRK 278


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/528 (32%), Positives = 255/528 (48%), Gaps = 102/528 (19%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H+    S   Y+  I    ++RAL  G+ +H+HL   G     + +  L+  Y +CG +S
Sbjct: 20  HRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLS 79

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
           +                               AR LFD++P  +   W  +     R   
Sbjct: 80  N-------------------------------ARKLFDKIPNTNIRRWIVLTGACARRGF 108

Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
             EAL  +  MQ  E    N+F L S+L A   +   R G+ +H  I++  F+SD  + S
Sbjct: 109 YEEALSAFSEMQK-EGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIIS 167

Query: 199 ALSDM-------------------------------YGKCGSINEARQIFDKM------- 220
           AL  M                               Y + G ++EA  +  KM       
Sbjct: 168 ALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKP 227

Query: 221 --------------------------------VDRDVVSWTAMIGRYFQEGRREEGFALF 248
                                           V+ DVVSWT++I  + Q     EGF  F
Sbjct: 228 NVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAF 287

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            E++  G  P++ T + +L AC + A    GK++HGY   IG +   +  SALV MY+KC
Sbjct: 288 KEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKC 347

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G +  +K +F  MP  + V+W SLI GYA +G  ++A+E F  + +S T+ DH+ F  VL
Sbjct: 348 GYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVL 407

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
            AC+HAG+V+ G   F  ++EK+ +    +HYAC+VDLL R+G+  EA D+I  MP++PD
Sbjct: 408 NACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPD 467

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           KF+W +LLG CR HGN++LA+ AAE LFE+EPE+P + + ++N+YA A
Sbjct: 468 KFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADA 515



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 150/309 (48%), Gaps = 6/309 (1%)

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           +YR +       S+  T +  +   +  + L  G+ +H +++  G        + L   Y
Sbjct: 13  VYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFY 72

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            +CG ++ AR++FDK+ + ++  W  + G   + G  EE  + FSE+ K G+RPN F   
Sbjct: 73  TECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLP 132

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
            +L AC   +    G+ +H  + +  ++  ++  SAL++MYSKCG+VE + +VF+ +   
Sbjct: 133 SILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDK 192

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QY 383
           DLV   ++++GYAQ+G   +AL   + + ++G +P+ + +  ++   +  G  DK +   
Sbjct: 193 DLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVG--DKSMVSE 250

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK---PDKFLWASLLGGCR 440
              +   +G+      +  ++    ++   HE  D   +M  +   P     +SLL  C 
Sbjct: 251 VFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACT 310

Query: 441 IHGNLDLAK 449
              NL   K
Sbjct: 311 NVANLRHGK 319



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 36/230 (15%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           ++L Q   PS    SSL+  C     L  GK++H +    G +  V++ + L+DMYAKCG
Sbjct: 289 EMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCG 348

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
            IS+A+ LF  M ER+  ++N++I G+   G   +A  LF++M + D             
Sbjct: 349 YISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDT------------ 396

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
                  LD                T ++VL+A S    + LG+ +    M+  +  +  
Sbjct: 397 ------KLD--------------HLTFTAVLNACSHAGMVELGESLFRK-MQEKYRIEPR 435

Query: 196 V--WSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRRE 242
           +  ++ + D+ G+ G ++EA  +   M V+ D   W A++G     G  E
Sbjct: 436 LEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIE 485


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 227/379 (59%), Gaps = 1/379 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N  I  + K G+L  A  +F  +  +   SW A+I G+ +   P +AL L   M  +   
Sbjct: 389 NAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQM-TYSGQ 447

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
             + FT+SS+L A + ++ L+ GKEIHGY++R G ++D  V ++L   Y  CG  + AR 
Sbjct: 448 QPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARV 507

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD+M D+++VSW AMI  Y Q G   E  ALF + +  GI+ +      V  AC+  +A
Sbjct: 508 LFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSA 567

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LGK+ HGY+ +      +F   +++ MY+K G ++ S+KVF+G+   ++ SW ++I  
Sbjct: 568 LRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVA 627

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           +  +G   +A+E +E + K G  PD   ++G+L AC HAGLV++GL+YF  ++  + +  
Sbjct: 628 HGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEP 687

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HYAC++D+LAR+GR  +A  ++++MP + D  +W+SLL  CR  G L++ ++ A+ L
Sbjct: 688 KLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKL 747

Query: 456 FEIEPENPATYVTMANIYA 474
            E+EP+    YV ++N+YA
Sbjct: 748 LELEPDKAENYVLLSNLYA 766



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 223/475 (46%), Gaps = 62/475 (13%)

Query: 2   IDILCNQRRLKEALQILHQ-------ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLK- 53
           I  LC    L  AL ++         IS  +      L+Q C   + +E G+++H  +  
Sbjct: 12  IAALCETDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSD 71

Query: 54  SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARN 113
           S+ ++    ++  L+ MYA CG+  D+                               R 
Sbjct: 72  STHYRNDYVLNTRLIKMYAMCGSPLDS-------------------------------RL 100

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           +FD M  ++   W A++SGY R     + + ++  + +  +   + FT  SV+ A   I 
Sbjct: 101 VFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGIL 160

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            +RLG+ IHG +++ G   D  V +AL  MYGKCG+++EA ++FD M + ++VSW +MI 
Sbjct: 161 DVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMIC 220

Query: 234 RYFQEGRREEGFALFSELI-KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292
            + + G   + F L  E++ + G+ P+  T   +L  CA     ++G  +HG   ++G  
Sbjct: 221 AFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLS 280

Query: 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352
                 +A+V+MYSKCG +  ++  F      ++VSW ++I+ ++  G  ++A    + +
Sbjct: 281 EEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 353 LKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL---- 406
              G +   + +  + VL AC     +DK LQ   S+KE HG  Y+  H    V+L    
Sbjct: 341 QIQGEEMKANEVTILNVLPAC-----LDK-LQ-LRSLKELHG--YSFRHCFQHVELSNAF 391

Query: 407 ---LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
               A+ G  + AE V   +  K     W +L+GG   +G+    ++A   LF++
Sbjct: 392 ILAYAKCGALNSAEKVFHGIGDKTVSS-WNALIGGHAQNGD---PRKALHLLFQM 442



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 173/372 (46%), Gaps = 41/372 (11%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
            P    + S+I+ C     +  G+ +H  +   G    VF+ N L+ MY KCG       
Sbjct: 143 QPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCG------- 195

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
                                   ++++A  +FD MP+ +  SW +MI  +       ++
Sbjct: 196 ------------------------AVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDS 231

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
            DL   M   E  + +  T+ ++L   +    + +G  IHG  ++ G   + +V +A+  
Sbjct: 232 FDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVY 291

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--IRPNA 260
           MY KCG +NEA+  F K  +++VVSW  MI  +  EG   E F L  E+   G  ++ N 
Sbjct: 292 MYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANE 351

Query: 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
            T   VL AC D       K++HGY  R  +      ++A +  Y+KCG + +++KVF+G
Sbjct: 352 VTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVEL-SNAFILAYAKCGALNSAEKVFHG 410

Query: 321 MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380
           +    + SW +LI G+AQNG P KAL     +  SG QPD      +L AC H     K 
Sbjct: 411 IGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHL----KS 466

Query: 381 LQYFHSIKEKHG 392
           LQY    KE HG
Sbjct: 467 LQYG---KEIHG 475



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 164/328 (50%), Gaps = 38/328 (11%)

Query: 12  KEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           ++AL +L Q+++    P     SSL+  C   ++L+ GK++H ++  +G +   F+   L
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSL 492

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           L  Y  CG  S A+ LFD M+++++ S+N MISG+++ G                     
Sbjct: 493 LSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNG--------------------- 531

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                      P E+L L+R   + E   S++  + SV  A S +  LRLGKE HGY+++
Sbjct: 532 ----------LPYESLALFRKSLS-EGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK 580

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
                D  V  ++ DMY K G I E+R++FD + D++V SW A+I  +   G  +E   L
Sbjct: 581 ALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIEL 640

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGY-DPYSFAASALVHMYS 306
           +  + K G  P+ FT+ G+L AC      E G +    M      +P     + L+ M +
Sbjct: 641 YERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLA 700

Query: 307 KCGNVENSKKVFNGMP-RPDLVSWTSLI 333
           + G ++++ ++ N MP   D   W+SL+
Sbjct: 701 RAGRLDDALRLVNEMPEEADNRIWSSLL 728


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 269/500 (53%), Gaps = 36/500 (7%)

Query: 8   QRRLKEALQILHQISHPSPSIY----SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
            R+  EA  +  Q+     S+     SS+++   +    + G+ V+  +   GF   + +
Sbjct: 79  NRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIV 138

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
            N +LD++ +C  +  A+  FDEM E+D+ S+N MISG+     ++ AR  FD MP+R+ 
Sbjct: 139 QNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNV 198

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMM-----QNFENSVSNKFTLSSVLSAVSAIQCLRLG 178
            SWT+MI GYV+     EA  L+  M      ++   VS    +   ++A      + + 
Sbjct: 199 VSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIH 258

Query: 179 KEIHGYIMRTGF-----------------DSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
                 IM +GF                 + + + W  + D Y K G  N AR +FD+M 
Sbjct: 259 DTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMP 318

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD----HAAEE 277
            +++V+W+ MIG Y + G+  +   LF    +  I+P+     G+++AC+      AAE 
Sbjct: 319 MKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAES 378

Query: 278 LGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
           +   +H Y+   +  D   F  ++L+ MY+KCG++E + ++F      DL+ ++++IA  
Sbjct: 379 I---IHNYVGPSLLSDLRVF--TSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAAL 433

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           A +G+   A+  F+ + ++  +PD + F+GVLTAC H GLVD+G +YF  + E+ G+  +
Sbjct: 434 ANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPS 493

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
             HYAC+VDLL R G   EA ++I  MP+ P   +W +LL  CR+H N+ LA+ AA  LF
Sbjct: 494 EKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELF 553

Query: 457 EIEPENPATYVTMANIYASA 476
           +IEP+N   Y+ ++NIYA+A
Sbjct: 554 KIEPDNSGNYILLSNIYAAA 573



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 190/404 (47%), Gaps = 61/404 (15%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N ++  +++ G+ + A  +FDE+ Q + + WT++I GYV   Q  EA  L+  M+    S
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPIS 98

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           V N FT+SSVL A++ +   + G+ ++G++++ GF  D +V +++ D++ +C  ++ ARQ
Sbjct: 99  VLN-FTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQ 157

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
            FD+M ++D+VSW  MI  Y    R +     F  + +  +        G + A     A
Sbjct: 158 AFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEA 217

Query: 276 EEL------------GKQVHGYM-------TRI--GYDPYSFAAS--ALVHMYSKCGNVE 312
           + L               V GYM        RI  G  P     S   ++  + K G +E
Sbjct: 218 QVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELE 277

Query: 313 NSKK-------------------------------VFNGMPRPDLVSWTSLIAGYAQNGM 341
           ++K                                +F+ MP  +LV+W+++I GYA+NG 
Sbjct: 278 SAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQ 337

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-- 399
           P KALE FE   +   +PD    +G+++AC+  G++D      H+     G +  +D   
Sbjct: 338 PLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYV---GPSLLSDLRV 394

Query: 400 YACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
           +  ++D+ A+ G   +A  +  +M    D   +++++     HG
Sbjct: 395 FTSLIDMYAKCGSIEKALQMF-EMAHPKDLLCYSTMIAALANHG 437



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 153/338 (45%), Gaps = 37/338 (10%)

Query: 165 VLSAVSAIQCLRLGKEIHG-YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           +L  +   + L+  K IH   ++ +   S E V + L  +Y + G+ + A ++FD++   
Sbjct: 5   ILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           +   WT++I  Y +  + +E F+LF ++ +  I    FT + VL A A     + G+ V+
Sbjct: 65  NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G++ + G+       ++++ ++ +C  V+ +++ F+ M   D+VSW  +I+GY  N   D
Sbjct: 125 GFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVD 184

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA------ 397
            A ++F+ +     + + + +  ++     AG + +    F S+  K   ++        
Sbjct: 185 IARKFFDRM----PERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYM 240

Query: 398 DHYACI--------------------VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
           D   C+                    +    ++G    A+D   +MP K +   W  +L 
Sbjct: 241 DIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNK-NVISWGIMLD 299

Query: 438 GCRIHGNLDLAKRAAEALFEIEP-ENPATYVTMANIYA 474
           G   +G+ +     A  LF+  P +N  T+ TM   YA
Sbjct: 300 GYIKNGDTN----GARCLFDQMPMKNLVTWSTMIGGYA 333


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/434 (34%), Positives = 242/434 (55%), Gaps = 33/434 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  G +VH++    G    + I N L+DMY KC                  C    M S 
Sbjct: 368 LLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKC------------------CCVKYMGSA 409

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           F             + MP++D  SWT +I+GY +    ++AL+L R +Q  E    +   
Sbjct: 410 F-------------EYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQ-LEKMDVDPMM 455

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221
           + S+L A S ++  +L KEIHGY+++ G  +D ++ +A+ ++YG+   ++ AR +F+ + 
Sbjct: 456 IGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESIN 514

Query: 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQ 281
            +D+VSWT+MI      G   E   LF+ LI++ I P+  T   VL A A  ++ + GK+
Sbjct: 515 SKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKE 574

Query: 282 VHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM 341
           +HG++ R G+      A++LV MY++CG +EN++ +FN + + DL+ WTS+I     +G 
Sbjct: 575 IHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGC 634

Query: 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA 401
              A++ F  +      PDHI F+ +L AC+H+GLV +G Q+F  +K ++ L    +HYA
Sbjct: 635 GKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYA 694

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
           C+VDLLARS    EA   +  MP++P   +W +LLG CRIH N DL + AA+ L ++  E
Sbjct: 695 CLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTE 754

Query: 462 NPATYVTMANIYAS 475
           N   YV ++N +A+
Sbjct: 755 NSGNYVLVSNTFAA 768



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 224/467 (47%), Gaps = 52/467 (11%)

Query: 11  LKEALQIL-HQISHPSPSI--------YSSLIQFCRQNRALEEGKKVHSH-LKSSGFKPG 60
           LKEA Q L H  + P P+         YS  ++ C  ++AL +G+++H+H LK+  +   
Sbjct: 22  LKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDS 81

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           VF+    + MY KCG+  DA                                 +FD+M +
Sbjct: 82  VFLDTKFVHMYGKCGSFYDAV-------------------------------KVFDKMSE 110

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
           R  F+W AMI   V   + +EA++LY+ M+    S+ + FT   VL A  A +  RLG E
Sbjct: 111 RTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSL-DAFTFPCVLKACGAFKERRLGCE 169

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK--MVDRDVVSWTAMIGRYFQE 238
           IHG  ++ G+     V +AL  MY KCG +  AR +FD   M   D VSW ++I  +  E
Sbjct: 170 IHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGE 229

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
           G   E  +LF  + + G+  N +TF   L AC      ++G+ +H  + +  +    + +
Sbjct: 230 GESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVS 289

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           +AL+ MY+ CG +E++++VF  M   D VSW +L++G  QN M   A+ +F+ +  SG +
Sbjct: 290 NALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQK 349

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           PD +  + ++ A   +  +  G++  H+   KHG+         ++D+  +         
Sbjct: 350 PDQVSVLNMIAASGRSANLLAGME-VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGS 408

Query: 419 VISKMPMKPDKFLWASLLGG-----CRIHGNLDLAKRAAEALFEIEP 460
               MP K D   W +++ G     C +   L+L ++      +++P
Sbjct: 409 AFEYMPEK-DLISWTTIIAGYAQNECHLDA-LNLLRKVQLEKMDVDP 453



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 155/318 (48%), Gaps = 24/318 (7%)

Query: 137 NQPIEALDLYRMMQNFENS---VSNKFTL----SSVLSAVSAIQCLRLGKEIHGYIMRTG 189
           ++PI   + ++ + +F       + +F L    S  L   ++ + L  G+++H + ++T 
Sbjct: 17  HRPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQ 76

Query: 190 FDSDEVVW-SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
              D V   +    MYGKCGS  +A ++FDKM +R + +W AMIG     GR  E   L+
Sbjct: 77  NYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELY 136

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            E+   G+  +AFTF  VL AC       LG ++HG   + GY  + F  +AL+ MY+KC
Sbjct: 137 KEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKC 196

Query: 309 GNVENSKKVFNG--MPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           G++  ++ +F+   M + D VSW S+I+ +   G   +AL  F  + + G + +   FV 
Sbjct: 197 GDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVS 256

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYA------CIVDLLARSGRFHEAEDVI 420
            L AC     +  G       +  H +   ++H+        ++ + A  G+  +AE V 
Sbjct: 257 ALQACEGPTFIKIG-------RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVF 309

Query: 421 SKMPMKPDKFLWASLLGG 438
             M  K D   W +LL G
Sbjct: 310 KSMLFK-DCVSWNTLLSG 326



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           +L++GK++H  L   GF     I+N L+DMYA+CG + +A+ +F+ +++RD+  + +MI+
Sbjct: 568 SLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMIN 627

Query: 101 GFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQN 151
                G  + A +LF +M       D+ ++ A++         +E    + +M+N
Sbjct: 628 ANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKN 682


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/420 (35%), Positives = 234/420 (55%), Gaps = 14/420 (3%)

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
            I   L+ MYAKCGN+ D++ +FD M ER+  ++N MI G+   G  + A  LF++M  R
Sbjct: 1   MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60

Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
              +W  MI G+ R      A    R   +  + + N  T + ++   +    +   +E+
Sbjct: 61  TAVTWIEMIDGFARSGDTETA---RRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREV 117

Query: 182 -HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
             G   R  F      WS++   Y K G++ EAR IFD++  R++V+W ++I  Y Q G 
Sbjct: 118 FEGMPQRNFF-----AWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGF 172

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE    F ++   G  P+  T A VL+AC+     + GK++H  M   G     F  + 
Sbjct: 173 SEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNG 232

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           LV MY+KCG++ N++ +F GM   +   W S+I+G+A +G   +ALE+F  +  S   PD
Sbjct: 233 LVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPD 292

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
            I F+ VL+AC H G V+ GL+ F  + EK+GLT    HY C++DLL R+GR  EA D+I
Sbjct: 293 EITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLI 351

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT----YVTMANIYASA 476
            +MP+KP+  +W +LLG CR+H ++++A R  E + +++    +     YV ++NIYA++
Sbjct: 352 KRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAAS 411



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 147/323 (45%), Gaps = 40/323 (12%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           ++ ++    +N  +E  ++V   +    F    F  + ++  Y K GN+ +A+++FD + 
Sbjct: 98  WTVMVDGYARNAEMEAAREVFEGMPQRNF----FAWSSMISGYCKKGNVKEARSIFDRIP 153

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
            R++ ++N++ISG+ + G  E+A   F +M Q + F             +P E       
Sbjct: 154 VRNLVNWNSLISGYAQNGFSEEALEAFGKM-QAEGF-------------EPDEV------ 193

Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
                       T++SVLSA S +  L  GK+IH  +   G   ++ V + L DMY KCG
Sbjct: 194 ------------TIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCG 241

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            +  AR IF+ M  R+   W +MI  +   G+ +E    F  +  S   P+  TF  VL+
Sbjct: 242 DLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLS 301

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLV 327
           ACA       G ++   M + G          L+ +  + G ++ +  +   MP +P+ V
Sbjct: 302 ACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDV 361

Query: 328 SWTSLIAG---YAQNGMPDKALE 347
            W +L+     +    M D+ +E
Sbjct: 362 VWGALLGACRVHLDMEMADRVVE 384



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 37/227 (16%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           +EAL+   ++      P     +S++  C Q   L+ GKK+H  +   G K   F+ N L
Sbjct: 174 EEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGL 233

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMYAKCG++++A+ +F+ M  R+   +N+MISGF   G                     
Sbjct: 234 VDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHG--------------------- 272

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
                     Q  EAL+ +  M++  +   ++ T  SVLSA +    +  G EI   + +
Sbjct: 273 ----------QSKEALEFFGRMED-SHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK 321

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIG 233
            G  +    +  L D+ G+ G I EA  +  +M V  + V W A++G
Sbjct: 322 YGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLG 368


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 256/477 (53%), Gaps = 43/477 (9%)

Query: 2   IDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +  LC    L  A+++L Q+      P+    +S++  C +      G+++H ++     
Sbjct: 183 VSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRMI----GEQIHGYMLKVMG 238

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
              V+ S  L+D Y++ G+   A+T+F+ +  ++V S+ +M+    + G LE A  +F E
Sbjct: 239 SQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSE 298

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M                  ++ +E                N+F  S  L A  ++ CL  
Sbjct: 299 M-----------------ISEAVE---------------PNEFAFSIALGACGSV-CL-- 323

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++IH   ++    +D  V +AL  MYG+ G ++E   +  K+ + D+VSWTA I   FQ
Sbjct: 324 GRQIHCSAIKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQ 383

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  E+  AL  ++   G  PN + F+  L++CAD A  + G+Q+H    ++G D     
Sbjct: 384 NGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCT 443

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +AL++MYSKCG + +++  F+ M   D++SW SLI G AQ+G  +  LE F  +  SG 
Sbjct: 444 GNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGW 503

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           QPD   F+ VL  C HAGLV +G  +F  + +++GLT T  HYAC++D+L R+GRF EA 
Sbjct: 504 QPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEAL 563

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +I  MP +PD  +W +LL  C++H NLD+ K A + L E+   + A+YV M+N+YA
Sbjct: 564 HMIKNMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASYVLMSNLYA 620



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 180/366 (49%), Gaps = 17/366 (4%)

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS- 157
           +    K G L  A +LFD MP+++  +WT  ISG  R  QP  A  ++  M   E+ V+ 
Sbjct: 49  LDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADM--LESGVAA 106

Query: 158 NKFTLSSVLSAVSAIQCL--RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           N F  ++ L+A +A       LG+++H   +R GF +D  + S L ++Y +CGS+  A +
Sbjct: 107 NDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEE 166

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F +M   DVV +T+++    + G       +  ++++ G++PN  T   +L  C     
Sbjct: 167 VFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAEC----P 222

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             +G+Q+HGYM ++      +A++AL+  YS+ G+ + ++ VF  +   ++VSW S++  
Sbjct: 223 RMIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQL 282

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
             ++G  + AL  F  ++    +P+   F   L AC   G V  G Q  H    K  L  
Sbjct: 283 CIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGAC---GSVCLGRQ-IHCSAIKCNLMT 338

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
                  ++ +  RSG   E E V+ K+   PD   W + +     +G    +++A   L
Sbjct: 339 DIRVSNALLSMYGRSGFVSEVEAVLGKIE-NPDLVSWTAAISANFQNG---FSEKAVALL 394

Query: 456 FEIEPE 461
            ++  E
Sbjct: 395 LQMHSE 400



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 10/272 (3%)

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           D   K G +++A  +FD+M  ++VV+WT  I    + G+ E   A+F+++++SG+  N F
Sbjct: 50  DALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDF 109

Query: 262 TFAGVLNACADHAAE--ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
                L ACA   A    LG+QVH    R G+   ++  S L+ +YS+CG++  +++VF 
Sbjct: 110 ACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFR 169

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M  PD+V +TSL++   +NG   +A+E    +++ G QP+      +L  C        
Sbjct: 170 RMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRM----I 225

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G Q  H    K   + +      ++D  +R G F  AE V   +  K +   W S++  C
Sbjct: 226 GEQ-IHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSK-NVVSWCSMMQLC 283

Query: 440 RIHGNLDLAKRA-AEALFE-IEPENPATYVTM 469
              G L+ A R  +E + E +EP   A  + +
Sbjct: 284 IRDGRLEDALRVFSEMISEAVEPNEFAFSIAL 315


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 254/469 (54%), Gaps = 36/469 (7%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
           K AL ++ ++S     P      S++      R L  G  VH ++  +GF+  V +S  L
Sbjct: 113 KVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTAL 172

Query: 68  LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
           +DMY+KCG++S                                AR +FD M  R   SW 
Sbjct: 173 VDMYSKCGSVS-------------------------------IARVIFDGMDHRTVVSWN 201

Query: 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           +MI GYV+      A+ +++ M + E       T+   L A + +  L  GK +H  + +
Sbjct: 202 SMIDGYVQSGDAEGAMLIFQKMLD-EGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQ 260

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
              DSD  V ++L  MY KC  ++ A  IF  + ++ +VSW AMI  Y Q G   E    
Sbjct: 261 LKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNA 320

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
           F E+    I+P++FT   V+ A A+ +     K +HG + R   D   F  +ALV MY+K
Sbjct: 321 FCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAK 380

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG +  ++K+F+ M    +++W ++I GY  +G+   ++E F+ + K   +P+ I F+  
Sbjct: 381 CGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCA 440

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L+AC+H+GLV++GL +F S+K+ +G+  T DHY  +VDLL R+GR ++A D I KMP+KP
Sbjct: 441 LSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKP 500

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              ++ ++LG C+IH N+DL ++AA  +F++ P++   +V +ANIYA+A
Sbjct: 501 GITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATA 549



 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 223/453 (49%), Gaps = 41/453 (9%)

Query: 11  LKEALQILHQISHPS--PSIY--SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
           L  AL    ++ H S  P +Y  + L++ C  N  L+ GK++H  + +SGF   +F    
Sbjct: 11  LDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTG 70

Query: 67  LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           +++MYAKC  I+DA  +FD M ERD+  +NTMISG+ + G  + A  L   M +      
Sbjct: 71  VVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSE------ 124

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
                                     E    +  T+ S+L AV+  + LR+G  +HGY++
Sbjct: 125 --------------------------EGHRPDSITIVSILPAVADTRLLRIGMAVHGYVL 158

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
           R GF+S   V +AL DMY KCGS++ AR IFD M  R VVSW +MI  Y Q G  E    
Sbjct: 159 RAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAML 218

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           +F +++  G++P   T  G L+ACAD    E GK VH  + ++  D      ++L+ MYS
Sbjct: 219 IFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYS 278

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KC  V+ +  +F  +    LVSW ++I GYAQNG  ++AL  F  +     +PD    V 
Sbjct: 279 KCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVS 338

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           V+ A      + +  ++ H +  +  L         +VD+ A+ G  H A  +   M  +
Sbjct: 339 VIPALAELS-IPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR 397

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459
                W +++ G   HG   L K + E   E++
Sbjct: 398 -HVITWNAMIDGYGTHG---LGKTSVELFKEMK 426



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 179/351 (50%), Gaps = 10/351 (2%)

Query: 129 MISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
           M+ GY + +    AL  + RM  +    V   FT   +L        L+ GKEIHG ++ 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTY--LLKLCGDNSDLKRGKEIHGSVIT 58

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL 247
           +GF  +    + + +MY KC  IN+A  +FD+M +RD+V W  MI  Y Q G  +    L
Sbjct: 59  SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 248 FSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307
              + + G RP++ T   +L A AD     +G  VHGY+ R G++     ++ALV MYSK
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178

Query: 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367
           CG+V  ++ +F+GM    +VSW S+I GY Q+G  + A+  F+ +L  G QP ++  +G 
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238

Query: 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427
           L AC   G +++G ++ H + ++  L         ++ + ++  R   A D+   +  K 
Sbjct: 239 LHACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT 297

Query: 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYASA 476
               W +++ G   +G ++    A  A  E++  N  P ++  ++ I A A
Sbjct: 298 -LVSWNAMILGYAQNGCVN---EALNAFCEMQSRNIKPDSFTMVSVIPALA 344


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 246/440 (55%), Gaps = 22/440 (5%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P V     +L  +A  G +++A+ LF+EM  +++ S+N MI  + +   ++ A  LF EM
Sbjct: 231 PNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM 290

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNF--ENSVSNKFTLS-------SVLS 167
           P++D+ SWTAMI+GYVR  + ++A ++  +M  +N   + ++ N +  S        + S
Sbjct: 291 PEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFS 350

Query: 168 AVSAIQCLRLGKEIHGY-----------IMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            +S    +     I GY           + +     D V W+ +   Y + G +++A ++
Sbjct: 351 QISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEM 410

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F++M +R+VVSW ++I  Y Q G   E    F  + + G +P+  T    L A A+ AA 
Sbjct: 411 FNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAAL 470

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
            +G Q+H    + G+    F  +A++ MY+K G V  ++ VF  +   D+VSW SLIAGY
Sbjct: 471 NVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGY 530

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           A NG   +A+E FE++   G  PD + F G+L+AC H G VD+GL  F S+ E + +   
Sbjct: 531 ALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQ 590

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           ++HYAC+++LL R GR  EA +++  M       +W +LL  CRIH NL+LAK +AE L 
Sbjct: 591 SEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLL 650

Query: 457 EIEPENPATYVTMANIYASA 476
            +EP+N + YV ++N++A A
Sbjct: 651 ALEPQNASNYVLLSNMHAEA 670



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/504 (25%), Positives = 219/504 (43%), Gaps = 114/504 (22%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++  YAK G I++A+ LFD M +R++ S+N+MI+G+     +E A  LFD M +RD +
Sbjct: 50  NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIY 109

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENS---------------------------VS 157
           SWT MI+ Y R  +  +A +L+ ++ + +++                           V 
Sbjct: 110 SWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVK 169

Query: 158 NKFTLSSVLSAVSAIQCLRLGKE----------------IHGYIMRTGFDS--------- 192
           N  + +S+LS  +    ++LG +                + GY+     DS         
Sbjct: 170 NVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP 229

Query: 193 --DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             + V W  +   +   G + EAR +F++M  +++VSW AMIG Y +E + ++ + LF E
Sbjct: 230 TPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFME 289

Query: 251 L-----IKSGIRPNAFTFAG-------VLNACADHAAEELGKQVHGYMTRIGYDPY---- 294
           +     +      N +   G       +LN             ++GY+     D      
Sbjct: 290 MPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIF 349

Query: 295 -------SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
                  S   ++++  Y+ CG  + + ++F  M   D+VSW ++IA YAQ G  DKALE
Sbjct: 350 SQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALE 409

Query: 348 -------------------------YFE------LLLKSGTQPDHIVFVGVLTACTHAGL 376
                                    YFE      L+ + G +PD    V  L A  +   
Sbjct: 410 MFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAA 469

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ G+Q  H +  K G          I+ + A+SGR  EAE+V +++  K D   W SL+
Sbjct: 470 LNVGVQ-LHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNK-DVVSWNSLI 527

Query: 437 GGCRIHGNLDLAKRAAEALFEIEP 460
            G  ++G     K A E LFE+ P
Sbjct: 528 AGYALNG---CGKEAVE-LFEVMP 547



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 205/428 (47%), Gaps = 32/428 (7%)

Query: 51  HLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLE 109
           ++KS G K   VF  N  +    + G I +A  +F +M ER++ +YN+MIS + K G + 
Sbjct: 4   NVKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIA 63

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIE-ALDLYRMMQNFENSVSNKFTLSSVLSA 168
            AR LFD MPQR+  SW +MI+GY+ +N+ +E A  L+  M  F+  +   ++ + +++ 
Sbjct: 64  NARELFDLMPQRNLVSWNSMIAGYL-HNELVEDAARLFDRM--FKRDI---YSWTLMITC 117

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
            + I  L   +E+   +       D V  +AL   Y K     EA+++FD+M+ ++VVSW
Sbjct: 118 YTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSW 174

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
            +++  Y + G+ + G   F  + +  +        G +      +A    K++      
Sbjct: 175 NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----- 229

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
               P   +   ++  ++  G +  ++ +FN MP  +LVSW ++I  Y +    D A + 
Sbjct: 230 ---TPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKL 286

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  +     + D + +  ++      G + +  +  + +  K+    TA     +++   
Sbjct: 287 FMEM----PEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTA-----MINGYL 337

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           +SGR  EA ++ S++ ++ D   W S++ G    G  D A R  +   E+  ++  ++ T
Sbjct: 338 QSGRMDEANEIFSQISVR-DSVCWNSMITGYAHCGRTDEALRLFQ---EMVCKDMVSWNT 393

Query: 469 MANIYASA 476
           M   YA A
Sbjct: 394 MIAAYAQA 401



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  G ++H     +GF   +F+ N +L MYAK G + +A+ +F E++ +DV S+N++I+
Sbjct: 469 ALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIA 528

Query: 101 GFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMM 149
           G+   G  ++A  LF+ MP R    D  ++T ++S         + L+L++ M
Sbjct: 529 GYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSM 581


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 261/468 (55%), Gaps = 36/468 (7%)

Query: 14  ALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSH-LKSSGF---KPGVFISNCLL 68
           A  +L Q  H P+ S   +L+    Q+ AL +G+ VH++ +++      K GV +   LL
Sbjct: 216 ACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALL 275

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
           DMYAKCG+                               L  A  +F+ M  R+  +W+A
Sbjct: 276 DMYAKCGH-------------------------------LVYASRVFEAMAVRNEVTWSA 304

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT 188
           ++ G+V   + +EA  L++ M        +  +++S L A + +  L LGK++H  + ++
Sbjct: 305 LVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKS 364

Query: 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF 248
           G  +D    ++L  MY K G I++A  +FD+MV +D VS++A++  Y Q G+ +E F +F
Sbjct: 365 GLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVF 424

Query: 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308
            ++    ++P+  T   ++ AC+  AA + GK  HG +   G    +   +AL+ MY+KC
Sbjct: 425 RKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKC 484

Query: 309 GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
           G ++ S+++F+ MP  D+VSW ++IAGY  +G+  +A   F  +     +PD + F+ ++
Sbjct: 485 GRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLI 544

Query: 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428
           +AC+H+GLV +G ++FH +  K+G+T   +HY  +VDLLAR G   EA   I  MP+K D
Sbjct: 545 SACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKAD 604

Query: 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
             +W +LLG CR+H N+DL K+ +  + ++ PE    +V ++NI+++A
Sbjct: 605 VRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAA 652



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 216/460 (46%), Gaps = 55/460 (11%)

Query: 24  PSPSIYSS--LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           P P+ Y+   +++ C     L   + VH H   +G    +F+S  L+D+YAKC       
Sbjct: 125 PQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCA------ 178

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
                                    S   A  +F  MP RD  +W AM++GY  + +  +
Sbjct: 179 -------------------------SFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSD 213

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE----VVW 197
            +    +MQ  ++   N  TL ++L  ++    L  G+ +H Y +R     D     +V 
Sbjct: 214 TIACLLLMQ--DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVG 271

Query: 198 SALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG-- 255
           +AL DMY KCG +  A ++F+ M  R+ V+W+A++G +   GR  E F+LF +++  G  
Sbjct: 272 TALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLC 331

Query: 256 -IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314
            + P   + A  L ACA+ +   LGKQ+H  + + G      A ++L+ MY+K G ++ +
Sbjct: 332 FLSPT--SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQA 389

Query: 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374
             +F+ M   D VS+++L++GY QNG  D+A   F  +     QPD    V ++ AC+H 
Sbjct: 390 TTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHL 449

Query: 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWAS 434
             +  G +  H      G+         ++D+ A+ GR   +  +   MP + D   W +
Sbjct: 450 AALQHG-KCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPAR-DIVSWNT 507

Query: 435 LLGGCRIHGNLDLAKRAAEALFEI-----EPENPATYVTM 469
           ++ G  IHG   L K A     ++     EP++  T++ +
Sbjct: 508 MIAGYGIHG---LGKEATALFLDMKHQACEPDD-VTFICL 543



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 182/385 (47%), Gaps = 23/385 (5%)

Query: 95  YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN 154
           +N MI G      L  AR+LFD++P      + A+I  Y     P  AL LYR ++    
Sbjct: 71  HNRMICG-----DLSLARHLFDQIPAPGIHDYNALIRAY-SLRGPALALRLYRSLRRRRL 124

Query: 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214
              N +T   VL A SA+  LR  + +H +  R G  +D  V +AL D+Y KC S   A 
Sbjct: 125 PQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAA 184

Query: 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274
            +F +M  RDVV+W AM+  Y   G+  +  A    L++    PNA T   +L   A H 
Sbjct: 185 TVFRRMPARDVVAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHG 243

Query: 275 AEELGKQVHGYMTRI----GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           A   G+ VH Y  R      +       +AL+ MY+KCG++  + +VF  M   + V+W+
Sbjct: 244 ALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWS 303

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSG---TQPDHIVFVGVLTACTHAGLVDKGL-QYFHS 386
           +L+ G+   G   +A   F+ +L  G     P  +     L AC  A L D  L +  H+
Sbjct: 304 ALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSV--ASALRAC--ANLSDLCLGKQLHA 359

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           +  K GL         ++ + A++G   +A  +  +M +K D   +++L+ G   +G  D
Sbjct: 360 LLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK-DTVSYSALVSGYVQNGKAD 418

Query: 447 LAKRAAEAL--FEIEPENPATYVTM 469
            A R    +    ++P+  AT V++
Sbjct: 419 EAFRVFRKMQACNVQPD-VATMVSL 442


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 246/440 (55%), Gaps = 22/440 (5%)

Query: 59  PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           P V     +L  +A  G +++A+ LF+EM  +++ S+N MI  + +   ++ A  LF EM
Sbjct: 231 PNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM 290

Query: 119 PQRDNFSWTAMISGYVRYNQPIEALDLYRMM--QNF--ENSVSNKFTLS-------SVLS 167
           P++D+ SWTAMI+GYVR  + ++A ++  +M  +N   + ++ N +  S        + S
Sbjct: 291 PEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFS 350

Query: 168 AVSAIQCLRLGKEIHGY-----------IMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
            +S    +     I GY           + +     D V W+ +   Y + G +++A ++
Sbjct: 351 QISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEM 410

Query: 217 FDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276
           F++M +R+VVSW ++I  Y Q G   E    F  + + G +P+  T    L A A+ AA 
Sbjct: 411 FNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAAL 470

Query: 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGY 336
            +G Q+H    + G+    F  +A++ MY+K G V  ++ VF  +   D+VSW SLIAGY
Sbjct: 471 NVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGY 530

Query: 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
           A NG   +A+E FE++   G  PD + F G+L+AC H G VD+GL  F S+ E + +   
Sbjct: 531 ALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQ 590

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
           ++HYAC+++LL R GR  EA +++  M       +W +LL  CRIH NL+LAK +AE L 
Sbjct: 591 SEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLL 650

Query: 457 EIEPENPATYVTMANIYASA 476
            +EP+N + YV ++N++A A
Sbjct: 651 ALEPQNASNYVLLSNMHAEA 670



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/504 (25%), Positives = 219/504 (43%), Gaps = 114/504 (22%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N ++  YAK G I++A+ LFD M +R++ S+N+MI+G+     +E A  LFD M +RD +
Sbjct: 50  NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIY 109

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENS---------------------------VS 157
           SWT MI+ Y R  +  +A +L+ ++ + +++                           V 
Sbjct: 110 SWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVK 169

Query: 158 NKFTLSSVLSAVSAIQCLRLGKE----------------IHGYIMRTGFDS--------- 192
           N  + +S+LS  +    ++LG +                + GY+     DS         
Sbjct: 170 NVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP 229

Query: 193 --DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSE 250
             + V W  +   +   G + EAR +F++M  +++VSW AMIG Y +E + ++ + LF E
Sbjct: 230 TPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFME 289

Query: 251 L-----IKSGIRPNAFTFAG-------VLNACADHAAEELGKQVHGYMTRIGYDPY---- 294
           +     +      N +   G       +LN             ++GY+     D      
Sbjct: 290 MPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIF 349

Query: 295 -------SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347
                  S   ++++  Y+ CG  + + ++F  M   D+VSW ++IA YAQ G  DKALE
Sbjct: 350 SQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALE 409

Query: 348 -------------------------YFE------LLLKSGTQPDHIVFVGVLTACTHAGL 376
                                    YFE      L+ + G +PD    V  L A  +   
Sbjct: 410 MFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAA 469

Query: 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           ++ G+Q  H +  K G          I+ + A+SGR  EAE+V +++  K D   W SL+
Sbjct: 470 LNVGVQ-LHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXK-DVVSWNSLI 527

Query: 437 GGCRIHGNLDLAKRAAEALFEIEP 460
            G  ++G     K A E LFE+ P
Sbjct: 528 AGYALNG---CGKEAVE-LFEVMP 547



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 205/428 (47%), Gaps = 32/428 (7%)

Query: 51  HLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLE 109
           ++KS G K   VF  N  +    + G I +A  +F +M ER++ +YN+MIS + K G + 
Sbjct: 4   NVKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIA 63

Query: 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIE-ALDLYRMMQNFENSVSNKFTLSSVLSA 168
            AR LFD MPQR+  SW +MI+GY+ +N+ +E A  L+  M  F+  +   ++ + +++ 
Sbjct: 64  NARELFDLMPQRNLVSWNSMIAGYL-HNELVEDAARLFDRM--FKRDI---YSWTLMITC 117

Query: 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSW 228
            + I  L   +E+   +       D V  +AL   Y K     EA+++FD+M+ ++VVSW
Sbjct: 118 YTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSW 174

Query: 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288
            +++  Y + G+ + G   F  + +  +        G +      +A    K++      
Sbjct: 175 NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----- 229

Query: 289 IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEY 348
               P   +   ++  ++  G +  ++ +FN MP  +LVSW ++I  Y +    D A + 
Sbjct: 230 ---TPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKL 286

Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           F  +     + D + +  ++      G + +  +  + +  K+    TA     +++   
Sbjct: 287 FMEM----PEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTA-----MINGYL 337

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           +SGR  EA ++ S++ ++ D   W S++ G    G  D A R  +   E+  ++  ++ T
Sbjct: 338 QSGRMDEANEIFSQISVR-DSVCWNSMITGYAHCGRTDEALRLFQ---EMVCKDMVSWNT 393

Query: 469 MANIYASA 476
           M   YA A
Sbjct: 394 MIAAYAQA 401



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 41  ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMIS 100
           AL  G ++H     +GF   +F+ N +L MYAK G + +A+ +F E++ +DV S+N++I+
Sbjct: 469 ALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIA 528

Query: 101 GFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMM 149
           G+   G  ++A  LF+ MP R    D  ++T ++S         + L+L++ M
Sbjct: 529 GYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSM 581


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 225/367 (61%), Gaps = 2/367 (0%)

Query: 111 ARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
           A  +F ++ +  N F W  +I GY      I A  LYR M+       +  T   ++ AV
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
           + +  +RLG+ IH  ++R+GF S   V ++L  +Y  CG +  A ++FDKM ++D+V+W 
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           ++I  + + G+ EE  AL++E+   GI+P+ FT   +L+ACA   A  LGK+VH YM ++
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G      +++ L+ +Y++CG VE +K +F+ M   + VSWTSLI G A NG   +A+E F
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 311

Query: 350 ELLLKS-GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           + +  + G  P  I FVG+L AC+H G+V +G +YF  ++E++ +    +H+ C+VDLLA
Sbjct: 312 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G+  +A + I  MPM+P+  +W +LLG C +HG+ DLA+ A   + ++EP +   YV 
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431

Query: 469 MANIYAS 475
           ++N+YAS
Sbjct: 432 LSNMYAS 438



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 168/344 (48%), Gaps = 43/344 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  LI+       +  G+ +HS +  SGF   +++ N LL +YA CG+++ A  +
Sbjct: 119 PDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+M E+D+ ++N++I+GF + G  E+A  L+ EM                         
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM------------------------- 213

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                  N +    + FT+ S+LSA + I  L LGK +H Y+++ G   +    + L D+
Sbjct: 214 -------NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 266

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFT 262
           Y +CG + EA+ +FD+MVD++ VSWT++I      G  +E   LF  +  + G+ P   T
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEIT 326

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRI----GYDPYSFAASALVHMYSKCGNVENSKKVF 318
           F G+L AC+ H    + K+   Y  R+      +P       +V + ++ G V+ + +  
Sbjct: 327 FVGILYACS-HCG--MVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 319 NGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
             MP +P++V W +L+     +G  D  L  F  +     +P+H
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPNH 425


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 232/381 (60%), Gaps = 2/381 (0%)

Query: 97  TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156
           +++  + + G++E A+ +FDE+P R++  W  ++ GY++Y++  E   L+ +M++   ++
Sbjct: 149 SLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLAL 208

Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF-DSDEVVWSALSDMYGKCGSINEARQ 215
            +  TL  ++ A   +   ++GK +HG  +R  F D  + + +++ DMY KC  ++ AR+
Sbjct: 209 -DALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARK 267

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +F+  VDR+VV WT +I  + +  R  E F LF ++++  I PN  T A +L +C+   +
Sbjct: 268 LFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGS 327

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
              GK VHGYM R G +  +   ++ + MY++CGN++ ++ VF+ MP  +++SW+S+I  
Sbjct: 328 LRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINA 387

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           +  NG+ ++AL+ F  +      P+ + FV +L+AC+H+G V +G + F S+   +G+  
Sbjct: 388 FGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVP 447

Query: 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
             +HYAC+VDLL R+G   EA+  I  MP+KP    W +LL  CRIH  +DLA   AE L
Sbjct: 448 EEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKL 507

Query: 456 FEIEPENPATYVTMANIYASA 476
             +EPE  + YV ++NIYA A
Sbjct: 508 LSMEPEKSSVYVLLSNIYADA 528



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 197/390 (50%), Gaps = 15/390 (3%)

Query: 89  ERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPI--EALD 144
           E +V   +++ + + +   L+ A + F+ +P  +R+  SW  ++SGY +       + L 
Sbjct: 36  EDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLL 95

Query: 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
           LY  M+   + V + F L   + A   +  L  G  IHG  M+ G D D+ V  +L +MY
Sbjct: 96  LYNRMRRHCDGV-DSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMY 154

Query: 205 GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
            + G++  A+++FD++  R+ V W  ++  Y +  +  E F LF  +  +G+  +A T  
Sbjct: 155 AQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLI 214

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGY-DPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
            ++ AC +  A ++GK VHG   R  + D   +  ++++ MY KC  ++N++K+F     
Sbjct: 215 CLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVD 274

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            ++V WT+LI+G+A+     +A + F  +L+    P+      +L +C+  G +  G + 
Sbjct: 275 RNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHG-KS 333

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H    ++G+   A ++   +D+ AR G    A  V   MP + +   W+S++    I+G
Sbjct: 334 VHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPER-NVISWSSMINAFGING 392

Query: 444 NLDLAKRAAEALFEIEPE----NPATYVTM 469
              L + A +   +++ +    N  T+V++
Sbjct: 393 ---LFEEALDCFHKMKSQNVVPNSVTFVSL 419



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 162/325 (49%), Gaps = 35/325 (10%)

Query: 32  LIQFCRQNRALEEGKKVHS-HLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           L++ C    A + GK VH   ++ S      ++   ++DMY KC  + +A+ LF+   +R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           +V  + T+ISGF K                                 + +EA DL+R M 
Sbjct: 276 NVVMWTTLISGFAK-------------------------------CERAVEAFDLFRQML 304

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
             E+ + N+ TL+++L + S++  LR GK +HGY++R G + D V +++  DMY +CG+I
Sbjct: 305 R-ESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNI 363

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
             AR +FD M +R+V+SW++MI  +   G  EE    F ++    + PN+ TF  +L+AC
Sbjct: 364 QMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSAC 423

Query: 271 ADHAAEELGKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLVS 328
           +     + G +    MTR  G  P     + +V +  + G +  +K   + MP +P   +
Sbjct: 424 SHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASA 483

Query: 329 WTSLIAGYAQNGMPDKALEYFELLL 353
           W +L++    +   D A E  E LL
Sbjct: 484 WGALLSACRIHKEVDLAGEIAEKLL 508



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 132/282 (46%), Gaps = 11/282 (3%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV-- 221
           ++L+ +S  + L   +++H  ++  GF+ + V+ S+L++ Y +   ++ A   F+++   
Sbjct: 9   ALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCW 68

Query: 222 DRDVVSWTAMIGRYFQEGR--REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279
            R+  SW  ++  Y +       +   L++ + +     ++F     + AC      E G
Sbjct: 69  KRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
             +HG   + G D   + A +LV MY++ G +E+++KVF+ +P  + V W  L+ GY + 
Sbjct: 129 ILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKY 188

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTAC--THAGLVDKGLQYFHSIKEKHGLTYTA 397
               +    F L+  +G   D +  + ++ AC    AG V K +   H +  +      +
Sbjct: 189 SKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCV---HGVSIRRSFIDQS 245

Query: 398 DHY-ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           D+  A I+D+  +      A  +  +  +  +  +W +L+ G
Sbjct: 246 DYLQASIIDMYVKCRLLDNARKLF-ETSVDRNVVMWTTLISG 286



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 34/219 (15%)

Query: 16  QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75
           Q+L +   P+    ++++  C    +L  GK VH ++  +G +         +DMYA+CG
Sbjct: 302 QMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCG 361

Query: 76  NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR 135
           NI  A+T+FD M ER+V S+++MI+ F   G  E                          
Sbjct: 362 NIQMARTVFDMMPERNVISWSSMINAFGINGLFE-------------------------- 395

Query: 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG-KEIHGYIMRTGFDSDE 194
                EALD +  M++ +N V N  T  S+LSA S    ++ G K+        G   +E
Sbjct: 396 -----EALDCFHKMKS-QNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEE 449

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVS-WTAMI 232
             ++ + D+ G+ G I EA+   D M  + + S W A++
Sbjct: 450 EHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALL 488



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 12/178 (6%)

Query: 29  YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
           +SS+I     N   EE       +KS    P       LL   +  GN+ +    F+ M 
Sbjct: 381 WSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMT 440

Query: 89  ERDVC------SYNTMISGFTKGGSLEQARNLFDEMPQRDNFS-WTAMISGYVRYNQPIE 141
            RD         Y  M+    + G + +A++  D MP +   S W A++S    + +   
Sbjct: 441 -RDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDL 499

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSA----IQCLRLGKEIHGYIMRTGFDSDEV 195
           A ++   + + E   S+ + L S + A +     + C+R    I GY    G  + EV
Sbjct: 500 AGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 254/473 (53%), Gaps = 36/473 (7%)

Query: 8   QRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           Q R  EAL++   +       S   +SSL+        L  G+++H     +     VF+
Sbjct: 212 QGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFV 271

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +N LLD Y+KC ++ D                                + LFDEM +RDN
Sbjct: 272 NNALLDFYSKCDSLGDL-------------------------------KQLFDEMSERDN 300

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            S+  MIS          AL L+R MQ            +S+LS   A+  +++G++IH 
Sbjct: 301 VSYNVMISACSWNRCGGMALQLFRDMQTLGFD-RRTLPYASLLSVAGALPHIKIGRQIHA 359

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
            ++  G   ++ V +AL DMY KCG ++ A+ IF    D+  +SWTA+I    Q G+ EE
Sbjct: 360 QLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEE 419

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
              LF ++ ++G+ P+  T + ++ + +  A   +G+Q+H Y+T+ G+ P  F+ SAL+ 
Sbjct: 420 ALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLD 479

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MY+KCG ++ + + FN MP  + ++W ++I+ YAQ G    A+  F+ +L  G  PD + 
Sbjct: 480 MYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVT 539

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ VL AC H GL ++ ++YF  ++  + ++   +HY+C++D L R+G F + + VI +M
Sbjct: 540 FLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQKVIDEM 599

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           P + D  +W+S+L  CRI+GN DLA  AAE LF + P +   YV ++NIYA A
Sbjct: 600 PFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMVPTDATAYVILSNIYAKA 652



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 185/400 (46%), Gaps = 14/400 (3%)

Query: 50  SHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY---NTMISGFTKGG 106
           + +  +G  P  +     L+     G ++ A+ + D++ E+        N ++ G ++  
Sbjct: 26  ARMVKAGSDPATYRLELHLNYLVSSGRLAAARKVLDQVPEKSTLYLRFLNRILLGCSRSC 85

Query: 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166
            L  A+ LF    +R+  +WT M+       +  +A+ L+R M     +  +  T+++VL
Sbjct: 86  DLSAAKALFSAAARRNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVL 145

Query: 167 SAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV 226
           +    +    +G  +H  + + GF +  VV + L D Y K G I  AR++F +M  RD +
Sbjct: 146 N----VPGCDVGT-LHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSI 200

Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286
           ++ AMI    ++GR  E   LF+ + + G+  + FTF+ +L          LG+Q+HG  
Sbjct: 201 TYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLF 260

Query: 287 TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346
            R       F  +AL+  YSKC ++ + K++F+ M   D VS+  +I+  + N     AL
Sbjct: 261 VRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMAL 320

Query: 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
           + F  +   G     + +  +L+       +  G Q  H+    HGLT        ++D+
Sbjct: 321 QLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQ-IHAQLILHGLTLEDFVGNALIDM 379

Query: 407 LARSGRFHEAEDVISKMPMKPDK--FLWASLLGGCRIHGN 444
            ++ G    A+ + +    K DK    W +L+ GC  +G 
Sbjct: 380 YSKCGMLDAAKTIFA---YKSDKTAISWTALITGCVQNGQ 416


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 254/478 (53%), Gaps = 50/478 (10%)

Query: 10   RLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
            +L  A ++  +I + +   +  L   C +    EE     S ++  G +P  F+   L  
Sbjct: 853  QLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFV---LPS 909

Query: 70   MYAKCGNISDAQT-------LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
            +   CG++SD +T       +     E D    + +I  ++K G +E+A  +FD +  +D
Sbjct: 910  ILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKD 969

Query: 123  NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182
                 AM+SGY ++    EALBL + MQ                                
Sbjct: 970  LVVMNAMVSGYAQHGFVHEALBLVQKMQ-------------------------------- 997

Query: 183  GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM----VDRDVVSWTAMIGRYFQE 238
                + G   + V W+ L   + + G  +   ++F  M    V+ DVVSWT++I  + Q 
Sbjct: 998  ----QAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQN 1053

Query: 239  GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
                EGF  F E++  G  P++ T + +L AC + A    GK++HGY   IG +   +  
Sbjct: 1054 FHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVR 1113

Query: 299  SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            SALV MY+KCG +  +K +F  MP  + V+W SLI GYA +G  ++A+E F  + +S T+
Sbjct: 1114 SALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTK 1173

Query: 359  PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
             DH+ F  VL AC+HAG+V+ G   F  ++EK+ +    +HYAC+VDLL R+G+  EA D
Sbjct: 1174 LDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYD 1233

Query: 419  VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            +I  MP++PDKF+W +LLG CR HGN++LA+ AAE LFE+EPE+P + + ++N+YA A
Sbjct: 1234 LIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADA 1291



 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 249/468 (53%), Gaps = 39/468 (8%)

Query: 13  EALQILHQI----SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLL 68
           +A Q+  QI    + P+   YS+++  C    A++EGK++H+H+    +     + N LL
Sbjct: 197 QAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALL 256

Query: 69  DMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128
            +Y+KCG                                +E+A  +F+ + QR+  SWTA
Sbjct: 257 TLYSKCG-------------------------------MMEEAEIVFESLRQRNIISWTA 285

Query: 129 MISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187
            I+G+ ++    +AL  + MM+  E+ +  N+FT S VL++   ++    G+  H  +++
Sbjct: 286 SINGFYQHGDFKKALKQFSMMR--ESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIK 343

Query: 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-VDRDVVSWTAMIGRYFQEGRREEGFA 246
            G  S   V +A+ DMY   G ++EA + F +M      VSW A+I  Y    + E+   
Sbjct: 344 KGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAME 403

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
            F  ++K  +  N FT++ +  AC+   +     Q+H  + +   +     AS+L+  Y+
Sbjct: 404 AFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYT 463

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           +CG++EN+ +VF  +   D+VSW S+I  Y+QNG P KA+     +++ G +P    F+ 
Sbjct: 464 QCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLT 523

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
           VL+AC+H+GLV +G ++F S+ + + +     H +C+VD+L R+G+   A D I K+ MK
Sbjct: 524 VLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMK 583

Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           P   +W  LL  CR + NL +A+  AE + ++EP +   YVT++N+YA
Sbjct: 584 PTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYA 631



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 189/407 (46%), Gaps = 35/407 (8%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           S + FC +   +E G++ H  +   G     F+   L+DMYAKCG +  A  ++D+M   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
           D  + N +IS + + G   QA  +F ++                                
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNM----------------------------- 208

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
               +  N +T S++L+    I  ++ GK++H ++++  + S+  V +AL  +Y KCG +
Sbjct: 209 ---GTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMM 265

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            EA  +F+ +  R+++SWTA I  ++Q G  ++    FS + +SGI PN FTF+ VL +C
Sbjct: 266 EEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSW 329
                   G+  H  + + G     F  +A++ MYS  G ++ ++K F  M R    VSW
Sbjct: 326 GCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSW 385

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            +LIAGY  N   +KA+E F  ++K     +   +  +  AC+    +   +Q  HS   
Sbjct: 386 NALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQ-IHSRLI 444

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           K  +       + +++   + G    A  V +++    D   W S++
Sbjct: 445 KSNVESNLHVASSLIEAYTQCGSLENAVQVFTQIS-DADVVSWNSII 490



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 167/315 (53%), Gaps = 9/315 (2%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           S LS      C+ LG+  H ++++ G  SDE V ++L DMY KCG ++ A +++DKM   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           D  +   +I  Y + G   + F +F ++   G RPN +T++ +L  C   +A + GKQ+H
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
            ++ ++ Y   +   +AL+ +YSKCG +E ++ VF  + + +++SWT+ I G+ Q+G   
Sbjct: 238 AHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFK 297

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL--QYFHSIKEKHGLTYTADHYA 401
           KAL+ F ++ +SG +P+   F  VL +C   G V   +  + FH+   K G+        
Sbjct: 298 KALKQFSMMRESGIEPNEFTFSIVLASC---GCVKDFIDGRMFHTQVIKKGMASGVFVGT 354

Query: 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461
            I+D+ +  G   EAE    +M        W +L+ G  ++  ++   +A EA   +  E
Sbjct: 355 AIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIE---KAMEAFCRMVKE 411

Query: 462 NPA-TYVTMANIYAS 475
           + A    T +NI+ +
Sbjct: 412 DVACNEFTYSNIFKA 426



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 151/309 (48%), Gaps = 6/309 (1%)

Query: 145  LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204
            +YR +       S+  T +  +   +  + L  G+ +H +++  G        + L   Y
Sbjct: 789  VYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFY 848

Query: 205  GKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
             +CG ++ AR++FDK+ + ++  W  + G   + G  EE  + FSE+ K G+RPN F   
Sbjct: 849  TECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLP 908

Query: 265  GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
             +L AC   +    G+ +H  + +  ++  ++  SAL++MYSKCG+VE + +VF+ +   
Sbjct: 909  SILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDK 968

Query: 325  DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL-QY 383
            DLV   ++++GYAQ+G   +AL+  + + ++G +P+ + +  ++   +  G  DK +   
Sbjct: 969  DLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVG--DKSMVSE 1026

Query: 384  FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK---PDKFLWASLLGGCR 440
               +   +G+      +  ++    ++   HE  D   +M  +   P     +SLL  C 
Sbjct: 1027 VFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACT 1086

Query: 441  IHGNLDLAK 449
               NL   K
Sbjct: 1087 NVANLRHGK 1095


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 247/446 (55%), Gaps = 28/446 (6%)

Query: 31  SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           SL+  C +   L +GK VH ++  +G +   +++  LL+MY KCG+I DA+++FDE    
Sbjct: 240 SLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEF--- 296

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                    S  T GG               D   WTAMI GY +   P  AL+L+   +
Sbjct: 297 ---------SVSTCGGG-------------DDLVFWTAMIVGYTQRGYPQAALELFTD-K 333

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
            +   + N  TL+S+LSA + ++ + +GK +H  +++ G D D  + ++L DMY KCG I
Sbjct: 334 KWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKCGLI 392

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
            +A  +F   VD+DVVSW ++I  Y Q G   E   LF+ +      P+A T  GVL+AC
Sbjct: 393 PDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSAC 452

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           A   A ++G  +HG+  + G    S +  +AL++ Y+KCG+  +++ VF+GM   + V+W
Sbjct: 453 ASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTW 512

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            ++I G    G    +L  F  +LK    P+ +VF  +L AC+H+G+V++GL  F  + +
Sbjct: 513 AAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCK 572

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
           +     +  HYAC+VDLLAR+G   EA D I KMP++P   ++ + L GC +H N D  +
Sbjct: 573 ELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDFGE 632

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
            A   + E+ P+    YV ++N+YAS
Sbjct: 633 VAIRRMLELHPDQACYYVLISNLYAS 658



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 214/424 (50%), Gaps = 43/424 (10%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           ++S L++   Q R +    K+H ++  S      F+   L+D Y+KCG + DA+ +FDE+
Sbjct: 137 VFSILLKTASQLRDIVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLRDARKVFDEI 195

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
            +R V S+ +MI  + +    E+   LF+ M  R+ F                  LD   
Sbjct: 196 PDRSVVSWTSMIVAYVQNECAEEGLMLFNRM--REGF------------------LD--- 232

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
                     N FT+ S+++A + + CL  GK +HGY+++ G + +  + ++L +MY KC
Sbjct: 233 ---------GNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKC 283

Query: 208 GSINEARQIFDKMV------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           G I +AR +FD+          D+V WTAMI  Y Q G  +    LF++     I PN+ 
Sbjct: 284 GDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSV 343

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           T A +L+ACA      +GK +H  + + G D  S   S LV MY+KCG + ++  VF   
Sbjct: 344 TLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNS-LVDMYAKCGLIPDAHYVFATT 402

Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
              D+VSW S+I+GYAQ+G   +AL+ F  +      PD +  VGVL+AC   G    GL
Sbjct: 403 VDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGL 462

Query: 382 QYFHSIKEKHGLTYTADHYA-CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCR 440
              H    K+GL  ++ +    +++  A+ G    A  V   M  K +   WA+++GGC 
Sbjct: 463 S-LHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEK-NAVTWAAMIGGCG 520

Query: 441 IHGN 444
           + G+
Sbjct: 521 MQGD 524



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 183/365 (50%), Gaps = 14/365 (3%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            T+IS +   G L  AR LF  +P   + S+  +I  +   +     +  Y + +    S
Sbjct: 72  TTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLGS 131

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
            ++    S +L   S ++ + L  ++H  I+++   +D  V ++L D Y KCG + +AR+
Sbjct: 132 FNDLVVFSILLKTASQLRDIVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLRDARK 190

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD++ DR VVSWT+MI  Y Q    EEG  LF+ + +  +  N FT   ++ AC     
Sbjct: 191 VFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGC 250

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP------DLVSW 329
              GK VHGY+ + G +  S+ A++L++MY KCG++ +++ VF+           DLV W
Sbjct: 251 LHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFW 310

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
           T++I GY Q G P  ALE F         P+ +    +L+AC     +  G +  H +  
Sbjct: 311 TAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMG-KLLHVLVV 369

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN----L 445
           K+GL  T+   + +VD+ A+ G   +A  V +   +  D   W S++ G    G+    L
Sbjct: 370 KYGLDDTSLRNS-LVDMYAKCGLIPDAHYVFAT-TVDKDVVSWNSVISGYAQSGSAYEAL 427

Query: 446 DLAKR 450
           DL  R
Sbjct: 428 DLFNR 432


>gi|125557892|gb|EAZ03428.1| hypothetical protein OsI_25566 [Oryza sativa Indica Group]
          Length = 519

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 225/388 (57%), Gaps = 8/388 (2%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
             +   + K G +++AR +FDE P RD   W  M+S Y  +    E  D++  M+     
Sbjct: 45  TALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMRR-SGF 103

Query: 156 VSNKFTLSSVLSAVSAIQC-------LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
             + FT S++LS  ++  C       L LG  +HG ++R G   D VV +AL DMY KCG
Sbjct: 104 PGDGFTFSALLSVRASSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCG 163

Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
            + EA ++FD MV R+ VSW A+I  Y +  R +E F LF  +++ G  P+  T A +L+
Sbjct: 164 QVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLS 223

Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
           +CAD AA     Q+H Y  R G   +    +AL+ +Y K G V+ +K+ F  +  PDLV+
Sbjct: 224 SCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMVYGKNGFVQEAKRTFGMIHNPDLVT 283

Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
           W+S+++ +A  G+   A++ F+ +L+ G + D I F+GVL+AC+HAGL++ G +YF  + 
Sbjct: 284 WSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMT 343

Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             + +  T  H AC+VDLL R+GR  +A + +  M    +  +  + LG CR+ GN++ A
Sbjct: 344 RDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESA 403

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           K AA  LF ++P++P  Y+ ++N YA+A
Sbjct: 404 KWAASRLFSLKPDDPINYLLISNTYAAA 431



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 13/284 (4%)

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +H   +++G  SD  V +AL+D Y K G ++ AR++FD+   RD V W  M+  Y   G 
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVL-----NACADHA--AEELGKQVHGYMTRIGYDP 293
             E + +F  + +SG   + FTF+ +L     ++C DHA     LG  VHG + R+G   
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSCYDHANLLLVLGSSVHGIVIRLGLHL 147

Query: 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL 353
               A+AL+ MY+KCG V  + +VF+ M   + VSW ++I  Y ++    +A + F  ++
Sbjct: 148 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 207

Query: 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413
           + G  PD +    +L++C      ++  Q  H+   + GL         ++ +  ++G  
Sbjct: 208 RHGFCPDELTLASLLSSCADMAAANEATQ-LHAYTVRRGLQDFLQVGNALIMVYGKNGFV 266

Query: 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
            EA+     M   PD   W+S++        L LAK A + LF+
Sbjct: 267 QEAKRTFG-MIHNPDLVTWSSMVSS---FAYLGLAKSAID-LFD 305



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 33/284 (11%)

Query: 39  NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM 98
           N  L  G  VH  +   G    V ++  LLDMYAKCG +++A  +FD M  R+  S+N  
Sbjct: 127 NLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWN-- 184

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158
                                        A+I  Y ++++  EA DL+  M        +
Sbjct: 185 -----------------------------AIIVCYGKHDRGKEAFDLFVSMMR-HGFCPD 214

Query: 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD 218
           + TL+S+LS+ + +       ++H Y +R G      V +AL  +YGK G + EA++ F 
Sbjct: 215 ELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMVYGKNGFVQEAKRTFG 274

Query: 219 KMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEEL 278
            + + D+V+W++M+  +   G  +    LF  +++ GIR +   F GVL+AC+     E 
Sbjct: 275 MIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIED 334

Query: 279 GKQVHGYMTR-IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           G +    MTR    DP     + LV +  + G + ++ +    M
Sbjct: 335 GFKYFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNM 378



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 4   ILC--NQRRLKEALQI-LHQISH---PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I+C     R KEA  + +  + H   P     +SL+  C    A  E  ++H++    G 
Sbjct: 187 IVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGL 246

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +  + + N L+ +Y K G + +A+  F  +   D+ ++++M+S F   G  + A +LFD 
Sbjct: 247 QDFLQVGNALIMVYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDR 306

Query: 118 MPQR 121
           M Q+
Sbjct: 307 MLQQ 310


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 225/380 (59%), Gaps = 2/380 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N  ++ + K GSL  A+ +F  +  +   SW A+I G+ + N P  +LD +  M+     
Sbjct: 184 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK-ISGL 242

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           + + FT+ S+LSA S ++ LRLGKE+HG+I+R   + D  V+ ++  +Y  CG +   + 
Sbjct: 243 LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQA 302

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD M D+ +VSW  +I  Y Q G  +    +F +++  GI+    +   V  AC+   +
Sbjct: 303 LFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPS 362

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LG++ H Y  +   +  +F A +L+ MY+K G++  S KVFNG+      SW ++I G
Sbjct: 363 LRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMG 422

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  +G+  +A++ FE + ++G  PD + F+GVLTAC H+GL+ +GL+Y   +K   GL  
Sbjct: 423 YGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKP 482

Query: 396 TADHYACIVDLLARSGRFHEAEDVIS-KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              HYAC++D+L R+G+  +A  V++ +M  + D  +W SLL  CRIH NL++ ++ A  
Sbjct: 483 NLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAK 542

Query: 455 LFEIEPENPATYVTMANIYA 474
           LFE+EPE P  YV ++N+YA
Sbjct: 543 LFELEPEKPENYVLLSNLYA 562



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 208/434 (47%), Gaps = 36/434 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +   +++  C + R +  GK VH           + ++N L+DMY+KCG I++AQ +
Sbjct: 40  PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 99

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F     ++V S+NTM+ GF+  G        FD + Q                       
Sbjct: 100 FKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQ----------------------- 133

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
               M+   E+  +++ T+ + +        L   KE+H Y ++  F  +E+V +A    
Sbjct: 134 ----MLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 189

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS++ A+++F  +  + V SW A+IG + Q            ++  SG+ P++FT 
Sbjct: 190 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 249

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L+AC+   +  LGK+VHG++ R   +   F   +++ +Y  CG +   + +F+ M  
Sbjct: 250 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 309

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             LVSW ++I GY QNG PD+AL  F  ++  G Q   I  + V  AC+    +  G + 
Sbjct: 310 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 369

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+   KH L   A     ++D+ A++G   ++  V + +  K     W +++ G  IHG
Sbjct: 370 -HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHG 427

Query: 444 NLDLAKRAAEALFE 457
              LAK A + LFE
Sbjct: 428 ---LAKEAIK-LFE 437



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 37/333 (11%)

Query: 7   NQRRLKEALQILHQISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           N  RL     +  +IS   P  ++  SL+  C + ++L  GK+VH  +  +  +  +F+ 
Sbjct: 225 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 284

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
             +L +Y  CG +   Q LFD M+++ + S+NT+I+G+ + G  ++A  +F +M      
Sbjct: 285 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM------ 338

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                    V Y   +  +                 ++  V  A S +  LRLG+E H Y
Sbjct: 339 ---------VLYGIQLCGI-----------------SMMPVFGACSLLPSLRLGREAHAY 372

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++   + D  +  +L DMY K GSI ++ ++F+ + ++   SW AMI  Y   G  +E 
Sbjct: 373 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 432

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVH 303
             LF E+ ++G  P+  TF GVL AC        G +    M +  G  P     + ++ 
Sbjct: 433 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVID 492

Query: 304 MYSKCGNVENSKKVF--NGMPRPDLVSWTSLIA 334
           M  + G ++ + +V         D+  W SL++
Sbjct: 493 MLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 525



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPNAFTFAGVLNACADHAAEEL 278
           R+ VSW +MI  +   G  EE F L  E+++        P+  T   VL  CA      L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338
           GK VHG+  ++  D      +AL+ MYSKCG + N++ +F      ++VSW +++ G++ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 339 NGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396
            G      +    +L  G   + D +  +  +  C H   +   L+  H    K    Y 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL-PSLKELHCYSLKQEFVYN 179

Query: 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
                  V   A+ G    A+ V   +  K     W +L+GG
Sbjct: 180 ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS-WNALIGG 220



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 11/121 (9%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVFISNC 66
           KEA+++  ++     +P    +  ++  C  +  + EG +    +KSS G KP +    C
Sbjct: 430 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 489

Query: 67  LLDMYAKCGNISDA-QTLFDEM-QERDVCSYNTMISGFTKGGSLEQ----ARNLFDEMPQ 120
           ++DM  + G +  A + + +EM +E DV  + +++S      +LE     A  LF+  P+
Sbjct: 490 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 549

Query: 121 R 121
           +
Sbjct: 550 K 550


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 225/367 (61%), Gaps = 2/367 (0%)

Query: 111 ARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169
           A  +F ++ +  N F W  +I GY      + A+ LYR M+       +  T   +L AV
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT 229
             +  +RLG+ IH  ++R+GF S   V ++L  +Y  CG +  A ++FDKM ++D+V+W 
Sbjct: 132 GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289
           ++I  + + G+ EE  AL++E+   GI+P+ FT   +L+ACA   A  LGK+ H YM ++
Sbjct: 192 SVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKV 251

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
           G      +++ L+ +Y++CG VE +K +F+ M   + VSWTSLI G A NG+  +A+E F
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELF 311

Query: 350 E-LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
           + +  K G  P  I FVG+L AC+H G+V +G +YF  + E++ +    +H+ C+VDLLA
Sbjct: 312 KNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLA 371

Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
           R+G+  +A + I KMPM+P+  +W +LLG C +HG+ DLA+ A   + ++EP +   YV 
Sbjct: 372 RAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVL 431

Query: 469 MANIYAS 475
           ++N+YAS
Sbjct: 432 LSNMYAS 438



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 160/325 (49%), Gaps = 35/325 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  L++   +   +  G+ +HS +  SGF   +++ N LL +YA CG+++ A  +
Sbjct: 119 PDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           FD+M E+D+ ++N++I+GF + G  E+A  L+ EM                         
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM------------------------- 213

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
                  + +    + FT+ S+LSA + I  L LGK  H Y+++ G   +    + L D+
Sbjct: 214 -------DLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDL 266

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL-IKSGIRPNAFT 262
           Y +CG + EA+ +FD+MVD++ VSWT++I      G  +E   LF  +  K G+ P   T
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEIT 326

Query: 263 FAGVLNACADHAAEELGKQVHGYMT-RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F G+L AC+     + G +    M+     +P       +V + ++ G V+ + +    M
Sbjct: 327 FVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKM 386

Query: 322 P-RPDLVSWTSLIAGYAQNGMPDKA 345
           P +P++V W +L+     +G  D A
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLA 411


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 225/380 (59%), Gaps = 2/380 (0%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
           N  ++ + K GSL  A+ +F  +  +   SW A+I G+ + N P  +LD +  M+     
Sbjct: 434 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK-ISGL 492

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
           + + FT+ S+LSA S ++ LRLGKE+HG+I+R   + D  V+ ++  +Y  CG +   + 
Sbjct: 493 LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQA 552

Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
           +FD M D+ +VSW  +I  Y Q G  +    +F +++  GI+    +   V  AC+   +
Sbjct: 553 LFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPS 612

Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
             LG++ H Y  +   +  +F A +L+ MY+K G++  S KVFNG+      SW ++I G
Sbjct: 613 LRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMG 672

Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
           Y  +G+  +A++ FE + ++G  PD + F+GVLTAC H+GL+ +GL+Y   +K   GL  
Sbjct: 673 YGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKP 732

Query: 396 TADHYACIVDLLARSGRFHEAEDVIS-KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
              HYAC++D+L R+G+  +A  V++ +M  + D  +W SLL  CRIH NL++ ++ A  
Sbjct: 733 NLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAK 792

Query: 455 LFEIEPENPATYVTMANIYA 474
           LFE+EPE P  YV ++N+YA
Sbjct: 793 LFELEPEKPENYVLLSNLYA 812



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 208/434 (47%), Gaps = 36/434 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  +   +++  C + R +  GK VH           + ++N L+DMY+KCG I++AQ +
Sbjct: 290 PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 349

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
           F     ++V S+NTM+ GF+  G        FD + Q                       
Sbjct: 350 FKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQ----------------------- 383

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
               M+   E+  +++ T+ + +        L   KE+H Y ++  F  +E+V +A    
Sbjct: 384 ----MLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 439

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS++ A+++F  +  + V SW A+IG + Q            ++  SG+ P++FT 
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 499

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             +L+AC+   +  LGK+VHG++ R   +   F   +++ +Y  CG +   + +F+ M  
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
             LVSW ++I GY QNG PD+AL  F  ++  G Q   I  + V  AC+    +  G + 
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H+   KH L   A     ++D+ A++G   ++  V + +  K     W +++ G  IHG
Sbjct: 620 -HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHG 677

Query: 444 NLDLAKRAAEALFE 457
              LAK A + LFE
Sbjct: 678 ---LAKEAIK-LFE 687



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 182/414 (43%), Gaps = 40/414 (9%)

Query: 32  LIQFCRQNRALEEGKKVHSHLK-SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
           L+Q   + + +E G+K+H  +  S+  +    +   ++ MYA CG+  D+          
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDS---------- 139

Query: 91  DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
                                R +FD +  ++ F W A+IS Y R     E L+ +  M 
Sbjct: 140 ---------------------RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 178

Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
           +  + + + FT   V+ A + +  + +G  +HG +++TG   D  V +AL   YG  G +
Sbjct: 179 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 238

Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPNAFTFAGV 266
            +A Q+FD M +R++VSW +MI  +   G  EE F L  E+++        P+  T   V
Sbjct: 239 TDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTV 298

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           L  CA      LGK VHG+  ++  D      +AL+ MYSKCG + N++ +F      ++
Sbjct: 299 LPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNV 358

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQPDHIVFVGVLTACTHAGLVDKGLQYF 384
           VSW +++ G++  G      +    +L  G   + D +  +  +  C H   +   L+  
Sbjct: 359 VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL-PSLKEL 417

Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           H    K    Y        V   A+ G    A+ V   +  K     W +L+GG
Sbjct: 418 HCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS-WNALIGG 470



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 47/377 (12%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  +I+ C     +  G  VH  +  +G    VF+ N L+  Y   G ++DA   
Sbjct: 185 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDAL-- 242

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA- 142
                                         LFD MP+R+  SW +MI  +       E+ 
Sbjct: 243 -----------------------------QLFDIMPERNLVSWNSMIRVFSDNGFSEESF 273

Query: 143 LDLYRMMQNFENS----VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
           L L  MM+  EN     + +  TL +VL   +  + + LGK +HG+ ++   D + V+ +
Sbjct: 274 LLLGEMME--ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNN 331

Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSG--I 256
           AL DMY KCG I  A+ IF    +++VVSW  M+G +  EG     F +  +++  G  +
Sbjct: 332 ALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDV 391

Query: 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316
           + +  T    +  C   +     K++H Y  +  +      A+A V  Y+KCG++  +++
Sbjct: 392 KADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQR 451

Query: 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376
           VF+G+    + SW +LI G+AQ+  P  +L+    +  SG  PD      +L+AC+    
Sbjct: 452 VFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSK--- 508

Query: 377 VDKGLQYFHSIKEKHGL 393
               L+     KE HG 
Sbjct: 509 ----LKSLRLGKEVHGF 521



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 37/333 (11%)

Query: 7   NQRRLKEALQILHQISHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS 64
           N  RL     +  +IS   P  ++  SL+  C + ++L  GK+VH  +  +  +  +F+ 
Sbjct: 475 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 534

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
             +L +Y  CG +   Q LFD M+++ + S+NT+I+G+ + G  ++A  +F +M      
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM------ 588

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
                    V Y   +  +                 ++  V  A S +  LRLG+E H Y
Sbjct: 589 ---------VLYGIQLCGI-----------------SMMPVFGACSLLPSLRLGREAHAY 622

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++   + D  +  +L DMY K GSI ++ ++F+ + ++   SW AMI  Y   G  +E 
Sbjct: 623 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 682

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVH 303
             LF E+ ++G  P+  TF GVL AC        G +    M +  G  P     + ++ 
Sbjct: 683 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVID 742

Query: 304 MYSKCGNVENSKKVF--NGMPRPDLVSWTSLIA 334
           M  + G ++ + +V         D+  W SL++
Sbjct: 743 MLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 155/323 (47%), Gaps = 20/323 (6%)

Query: 146 YRMMQNF---ENSVSNKF-----TLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVV 196
           +R +Q F   + S S+ F      L  +L A    + + +G++IH  +   T   +D+V+
Sbjct: 63  FRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVL 122

Query: 197 WSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK-SG 255
            + +  MY  CGS +++R +FD +  +++  W A+I  Y +    +E    F E+I  + 
Sbjct: 123 CTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTD 182

Query: 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315
           + P+ FT+  V+ ACA  +   +G  VHG + + G     F  +ALV  Y   G V ++ 
Sbjct: 183 LLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDAL 242

Query: 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF-ELLLKSGT---QPDHIVFVGVLTAC 371
           ++F+ MP  +LVSW S+I  ++ NG  +++     E++ ++G     PD    V VL  C
Sbjct: 243 QLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302

Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
                +  G +  H    K  L         ++D+ ++ G    A+ +I KM    +   
Sbjct: 303 AREREIGLG-KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQ-MIFKMNNNKNVVS 360

Query: 432 WASLLGGCR----IHGNLDLAKR 450
           W +++GG       HG  D+ ++
Sbjct: 361 WNTMVGGFSAEGDTHGTFDVLRQ 383



 Score = 38.9 bits (89), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 11/121 (9%)

Query: 12  KEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVFISNC 66
           KEA+++  ++     +P    +  ++  C  +  + EG +    +KSS G KP +    C
Sbjct: 680 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 739

Query: 67  LLDMYAKCGNISDA-QTLFDEM-QERDVCSYNTMISGFTKGGSLEQ----ARNLFDEMPQ 120
           ++DM  + G +  A + + +EM +E DV  + +++S      +LE     A  LF+  P+
Sbjct: 740 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 799

Query: 121 R 121
           +
Sbjct: 800 K 800


>gi|242033511|ref|XP_002464150.1| hypothetical protein SORBIDRAFT_01g013130 [Sorghum bicolor]
 gi|241918004|gb|EER91148.1| hypothetical protein SORBIDRAFT_01g013130 [Sorghum bicolor]
          Length = 472

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 249/451 (55%), Gaps = 5/451 (1%)

Query: 5   LCNQRRLKEALQ-ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI 63
           LC+  R+KEAL     +     P ++S + + CR   AL   +++H+   +SG     F 
Sbjct: 24  LCSTGRVKEALHGRFREYLWSEPGLFSHIFRACR---ALPLLRQLHAFAATSGAAADRFT 80

Query: 64  SNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123
           +N LL  YA  G+   A+ LFD + +R+V S+N +I G+ K G LE AR LFDEMP R+ 
Sbjct: 81  ANHLLLGYADLGDFPAARALFDRIPKRNVMSWNILIGGYIKNGDLETARKLFDEMPARNV 140

Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183
            +W AMI+G        E+L  +  M+  E    ++F L S+    S ++ +  G+++H 
Sbjct: 141 ATWNAMIAGLTDSGLNEESLGFFLAMRR-EGMQPDEFGLGSLFRCCSGLRDVVSGRQVHA 199

Query: 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243
           Y++R+G D D  V S+L+ MY +CG + E       +   + VS   +I    Q G  E 
Sbjct: 200 YVVRSGLDRDMCVGSSLAHMYMRCGFLREGEAALQALPLLNTVSCNTIIAGRTQNGDSEG 259

Query: 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303
               F  +  +G+  NA TF   +++C+D AA   G+QVH  + R G D      ++LVH
Sbjct: 260 ALEYFCMMRGAGVEANAVTFVSAISSCSDLAALAQGQQVHAQVIRAGVDEVVPVMTSLVH 319

Query: 304 MYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363
           MYS+CG + +S++V  G    DLV  +++I+ Y  +G   KA+  F+ ++  G +P+ + 
Sbjct: 320 MYSRCGCLGDSERVCLGYSGTDLVLCSAMISAYGFHGHGQKAVSLFKQMIAGGAEPNEVT 379

Query: 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
           F+ +L AC+H+GL D+G+  F  +   +GL  +  HY CIVDLL RSG  +EAED+I  M
Sbjct: 380 FLTLLYACSHSGLKDEGMSCFELMTNTYGLKPSVKHYTCIVDLLGRSGCLNEAEDLILSM 439

Query: 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
           P++PD  +W +LL     H  L +    AEA
Sbjct: 440 PVQPDGVIWKTLLSALSPHRLLFVCAFEAEA 470


>gi|147864471|emb|CAN82639.1| hypothetical protein VITISV_028820 [Vitis vinifera]
          Length = 871

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/422 (35%), Positives = 239/422 (56%), Gaps = 22/422 (5%)

Query: 45  GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
           GK +H  +  +G      ++N +LD Y KC     A+ LF  M E+D  S+N M+S + +
Sbjct: 117 GKGIHGWILRNGVDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQ 176

Query: 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL-YRMMQNFENSVSNKFTLS 163
            G ++++ +LF ++P +D  SW  MI G +R      AL+L Y+M+        NK T S
Sbjct: 177 IGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVA--AGPAFNKLTFS 234

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF------ 217
             L   S++  L LGK+IH  +++ G   D  V ++L DMY KCG + +A  IF      
Sbjct: 235 IALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPRE 294

Query: 218 -----------DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266
                      D +V+   VSW++M+  Y Q G  E+    FS +I S +  + FT   V
Sbjct: 295 SSMMNSEESCDDAVVES--VSWSSMVSGYVQNGGFEDALKTFSSMICSQVEVDKFTLTSV 352

Query: 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326
           ++ACA     ELG+QVHGY+ +IG+    F  S+++ MY KCG++ ++  +FN     ++
Sbjct: 353 VSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNV 412

Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386
           V WTS+I+G A +G   +A+  FEL++  G  P+ + FVGVLTAC+HAGL+++G +YF  
Sbjct: 413 VLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRL 472

Query: 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
           ++E +G+   A+H+ C+VDL  R+GR +E ++ I    +     +W S L  CR+H N++
Sbjct: 473 MREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIE 532

Query: 447 LA 448
           + 
Sbjct: 533 MG 534



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 182/380 (47%), Gaps = 56/380 (14%)

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA-IQCLRLGKEIHGYI 185
             +ISG+ R     + L L+  MQ+ +    N+FTLS VL + S+ +   R+GK IHG+I
Sbjct: 66  VVLISGFARIGLSADVLGLFTKMQD-QGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWI 124

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
           +R G D D V+ +++ D Y KC     A ++F  M ++D VSW  M+  Y Q G  ++  
Sbjct: 125 LRNGVDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSV 184

Query: 246 ALFSEL-------------------------------IKSGIRPNAFTFAGVLNACADHA 274
            LF +L                               + +G   N  TF+  L   +  +
Sbjct: 185 DLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLS 244

Query: 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP---------- 324
              LGKQ+H  + ++G     F  ++L+ MY KCG +E +  +F  +PR           
Sbjct: 245 VLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPRESSMMNSEESC 304

Query: 325 -----DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
                + VSW+S+++GY QNG  + AL+ F  ++ S  + D      V++AC  AG+++ 
Sbjct: 305 DDAVVESVSWSSMVSGYVQNGGFEDALKTFSSMICSQVEVDKFTLTSVVSACASAGVLEL 364

Query: 380 GLQYFHSIKE-KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
           G Q    I++  HGL       + I+D+  + G  ++A  + ++   + +  LW S++ G
Sbjct: 365 GRQVHGYIQKIGHGLDVFLG--SSIIDMYVKCGSLNDAWLIFNQAKDR-NVVLWTSMISG 421

Query: 439 CRIHGNLDLAKRAAEALFEI 458
           C +HG      R A  LFE+
Sbjct: 422 CALHGQ----GREAVRLFEL 437


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 259/476 (54%), Gaps = 41/476 (8%)

Query: 1   AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
           A+ + C+ +  K  LQ       P     +SL+    +    ++GK++H ++  +     
Sbjct: 333 ALRLFCDMQ--KSGLQ-------PDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVD 383

Query: 61  VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
           VF+ + L+D+Y KC ++  AQ +FD  +  DV   +T                       
Sbjct: 384 VFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGST----------------------- 420

Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
                   MISGYV       A+ ++R +        N   ++S L A +++  +R+G+E
Sbjct: 421 --------MISGYVLNRMSEAAVKMFRYLLAL-GIKPNAVMVASTLPACASMAAMRIGQE 471

Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
           +HGY+++  ++    V SAL DMY KCG ++ +  +F KM  +D V+W +MI  + Q G 
Sbjct: 472 LHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGE 531

Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
            EE   LF ++I  G++ N  T + +L+ACA   A   GK++HG + +       FA SA
Sbjct: 532 PEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESA 591

Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
           L+ MY KCGN+E + +VF  MP  + VSW S+I+ Y  +G+  ++++    + + G + D
Sbjct: 592 LIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKAD 651

Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
           H+ F+ +++AC HAG V +GL+ F  + E++ +    +H +C+VDL +R+G+  +A   I
Sbjct: 652 HVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFI 711

Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           + MP KPD  +W +LL  CR+H N++LA+ A++ LF+++P N   YV M+NI A A
Sbjct: 712 ADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVA 767



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 196/417 (47%), Gaps = 36/417 (8%)

Query: 22  SHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79
           S P P  ++   +++ C    AL  G+ VH   ++ G    +++ + L+ MYA  G +  
Sbjct: 141 SSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDG 200

Query: 80  AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139
           A+ +FD M ERD   +N M+ G+ K G +  A  LF                        
Sbjct: 201 AREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLF------------------------ 236

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
                  R+M+       N  TL+  LS  +A   L  G ++H   ++ G + +  V + 
Sbjct: 237 -------RVMRA-SGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANT 288

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           L  MY KC  + EA ++F  M   D+V+W  MI    Q G  ++   LF ++ KSG++P+
Sbjct: 289 LVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPD 348

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           + T A +L A  +    + GK++HGY+ R       F  SALV +Y KC +V  ++ VF+
Sbjct: 349 SVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFD 408

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
                D+V  +++I+GY  N M + A++ F  LL  G +P+ ++    L AC     +  
Sbjct: 409 ATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRI 468

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLL 436
           G Q  H    K+         + ++D+ ++ GR   +  + SKM  K D+  W S++
Sbjct: 469 G-QELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAK-DEVTWNSMI 523



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 165/381 (43%), Gaps = 47/381 (12%)

Query: 22  SHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGF----KPG-VFISNCLLDMYAKC 74
           ++ SP  Y   +L++ C     L  G ++H+   +SG      PG   +   L+ MY   
Sbjct: 30  TNASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLA 89

Query: 75  GNISDAQTLFDEMQERDV---CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
               DA  +F  +          +N +I GFT  G                         
Sbjct: 90  RRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAG------------------------- 124

Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
                +  +  L   +M  +  +   +  TL  V+ + +A+  L LG+ +H      G D
Sbjct: 125 -----HHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLD 179

Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
            D  V SAL  MY   G ++ AR++FD M +RD V W  M+  Y + G       LF  +
Sbjct: 180 RDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVM 239

Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
             SG  PN  T A  L+ CA  A    G Q+H    + G +P    A+ LV MY+KC  +
Sbjct: 240 RASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCL 299

Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
           E + ++F  MPR DLV+W  +I+G  QNG+ D AL  F  + KSG QPD +    +L A 
Sbjct: 300 EEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPAL 359

Query: 372 THAGLVDKGLQYFHSIKEKHG 392
           T        L  F   KE HG
Sbjct: 360 TE-------LNGFKQGKEIHG 373


>gi|297813281|ref|XP_002874524.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320361|gb|EFH50783.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 688

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 246/443 (55%), Gaps = 29/443 (6%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           ++ C     L  GK++H  +  SG +   F  + L+DMY+ CG++SDA  +F   QE+  
Sbjct: 245 LKACSFGGLLTMGKQLHGCVVKSGLESSPFALSALIDMYSNCGSLSDAADVFH--QEKPA 302

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
                 +                          W +M+SG++  N+  EA     ++   
Sbjct: 303 LCNTVAV--------------------------WNSMLSGFL-INEENEAALGLLLLLYK 335

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
            +   + +TLS  L     +  LRLG ++H  ++ +G++ D +V S L D++   G+I E
Sbjct: 336 SDLCFDSYTLSGALKICINLVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQE 395

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
           A ++F ++ ++D+++++ +I    + G     F LF ELIK G+  + F  + +L  C+ 
Sbjct: 396 AHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSSILKVCSS 455

Query: 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332
            A+   GKQ+HG   + GY      A+AL  MY KCG ++NS  +F+GM   D+VSWT +
Sbjct: 456 LASLGCGKQIHGLCIKKGYQSEPVTATALGDMYVKCGEIDNSVVLFDGMLERDVVSWTGI 515

Query: 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392
           I G+ QNG  ++A +YF  ++ S  +P+ + F+G+L+AC H+GL+++      ++K ++G
Sbjct: 516 IVGFGQNGRVEEAFQYFHKMINSEIEPNEVTFLGLLSACRHSGLLEEARSILETMKCEYG 575

Query: 393 LTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452
           L    +HY C+VDLL ++GRF EAE++I KMP++PDK +W SLL  C  H N  L    A
Sbjct: 576 LEPYLEHYYCVVDLLGQAGRFQEAEELIKKMPLEPDKTIWMSLLTACGTHKNAGLITVIA 635

Query: 453 EALFEIEPENPATYVTMANIYAS 475
           E L +  PE+P+ Y +++N YA+
Sbjct: 636 EKLLKAFPEDPSLYTSLSNAYAT 658



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 225/477 (47%), Gaps = 51/477 (10%)

Query: 28  IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEM 87
           IYS++++ C     ++ G  V+  +     K  V + N ++DM+ K G +S+A + F E+
Sbjct: 109 IYSAVLKACGLVGDIQLGSFVYERIGKENLKGDVVLMNSVVDMFVKNGRLSEANSSFKEI 168

Query: 88  QERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147
              +  S+NT+ISG+ K G +E+A +LF+ +PQ +  SW  +ISG+V    P  AL+   
Sbjct: 169 LRPNSTSWNTLISGYCKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKGSP-RALEFLV 227

Query: 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC 207
            MQ  E  V + F L   L A S    L +GK++HG ++++G +S     SAL DMY  C
Sbjct: 228 RMQR-EGLVLDGFALPCGLKACSFGGLLTMGKQLHGCVVKSGLESSPFALSALIDMYSNC 286

Query: 208 GSINEARQIFDK---MVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA 264
           GS+++A  +F +    +   V  W +M+  +      E    L   L KS +  +++T +
Sbjct: 287 GSLSDAADVFHQEKPALCNTVAVWNSMLSGFLINEENEAALGLLLLLYKSDLCFDSYTLS 346

Query: 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
           G L  C +     LG QVH  +   GY+      S LV +++  GN++ + K+F+ +P  
Sbjct: 347 GALKICINLVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQEAHKLFHRLPNK 406

Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT------------ 372
           D+++++ LI G  ++G    A   F  L+K G   D  +   +L  C+            
Sbjct: 407 DIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSSILKVCSSLASLGCGKQIH 466

Query: 373 -----------------------HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
                                    G +D  +  F  + E+  +++T      I+    +
Sbjct: 467 GLCIKKGYQSEPVTATALGDMYVKCGEIDNSVVLFDGMLERDVVSWTG-----IIVGFGQ 521

Query: 410 SGRFHEAEDVISKM---PMKPDKFLWASLLGGCRIHGNLDLAKRAAEAL---FEIEP 460
           +GR  EA     KM    ++P++  +  LL  CR  G L+ A+   E +   + +EP
Sbjct: 522 NGRVEEAFQYFHKMINSEIEPNEVTFLGLLSACRHSGLLEEARSILETMKCEYGLEP 578



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 206/452 (45%), Gaps = 72/452 (15%)

Query: 33  IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV 92
           ++ C + +A + G+ + +H+   G    VF++N ++ MY     +SDA  +FDEM ER++
Sbjct: 12  LRHCGKIQAFKRGESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKVFDEMTERNI 71

Query: 93  CSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152
            ++ TM+SG+T  G                               +P +A++LYR M   
Sbjct: 72  VTWTTMVSGYTCDG-------------------------------KPSKAIELYRRMVES 100

Query: 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212
           +   +N+F  S+VL A   +  ++LG  ++  I +     D V+ +++ DM+ K G ++E
Sbjct: 101 QEEAANEFIYSAVLKACGLVGDIQLGSFVYERIGKENLKGDVVLMNSVVDMFVKNGRLSE 160

Query: 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI-------------------- 252
           A   F +++  +  SW  +I  Y + G  EE  +LF+ +                     
Sbjct: 161 ANSSFKEILRPNSTSWNTLISGYCKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKGSP 220

Query: 253 ----------KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302
                     + G+  + F     L AC+      +GKQ+HG + + G +   FA SAL+
Sbjct: 221 RALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHGCVVKSGLESSPFALSALI 280

Query: 303 HMYSKCGNVENSKKVFNGMPRPDLVS----WTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
            MYS CG++ ++  VF+   +P L +    W S+++G+  N   + AL    LL KS   
Sbjct: 281 DMYSNCGSLSDAADVFH-QEKPALCNTVAVWNSMLSGFLINEENEAALGLLLLLYKSDLC 339

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY--ACIVDLLARSGRFHEA 416
            D     G L  C +   +  GLQ  HS+    G  Y  D+   + +VDL A  G   EA
Sbjct: 340 FDSYTLSGALKICINLVNLRLGLQ-VHSLVVVSG--YELDYIVGSILVDLHANVGNIQEA 396

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
             +  ++P K D   ++ L+ GC   G   LA
Sbjct: 397 HKLFHRLPNK-DIIAFSGLIRGCVKSGFNSLA 427



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 68/372 (18%)

Query: 30  SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89
           S  ++ C     L  G +VHS +  SG++    + + L+D++A  GNI            
Sbjct: 346 SGALKICINLVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNI------------ 393

Query: 90  RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149
                              ++A  LF  +P +D  +++ +I G V+      A  L+R +
Sbjct: 394 -------------------QEAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFREL 434

Query: 150 QNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
                  +++F +SS+L   S++  L  GK+IHG  ++ G+ S+ V  +AL DMY KCG 
Sbjct: 435 IKLGLD-ADQFIVSSILKVCSSLASLGCGKQIHGLCIKKGYQSEPVTATALGDMYVKCGE 493

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I+ +  +FD M++RDVVSWT +I  + Q GR EE F  F ++I S I PN  TF G+L+A
Sbjct: 494 IDNSVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFQYFHKMINSEIEPNEVTFLGLLSA 553

Query: 270 CADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-RPDLV 327
           C      E  + +   M    G +PY      +V +  + G  + ++++   MP  PD  
Sbjct: 554 CRHSGLLEEARSILETMKCEYGLEPYLEHYYCVVDLLGQAGRFQEAEELIKKMPLEPDKT 613

Query: 328 SWTSLIAG----------------------------------YAQNGMPDKALEYFELLL 353
            W SL+                                    YA  GM D+  E  E   
Sbjct: 614 IWMSLLTACGTHKNAGLITVIAEKLLKAFPEDPSLYTSLSNAYATLGMWDQLSEVREAAK 673

Query: 354 KSGTQPDHIVFV 365
           K G +   + ++
Sbjct: 674 KLGAKESGMSWI 685



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 87/177 (49%), Gaps = 3/177 (1%)

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322
            A  L  C    A + G+ +  ++ + G     F A+ ++ MY     + ++ KVF+ M 
Sbjct: 8   IAAGLRHCGKIQAFKRGESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKVFDEMT 67

Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGL 381
             ++V+WT++++GY  +G P KA+E +  +++S  +  +  ++  VL AC   G +  G 
Sbjct: 68  ERNIVTWTTMVSGYTCDGKPSKAIELYRRMVESQEEAANEFIYSAVLKACGLVGDIQLGS 127

Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
             +  I  K  L         +VD+  ++GR  EA     ++ ++P+   W +L+ G
Sbjct: 128 FVYERIG-KENLKGDVVLMNSVVDMFVKNGRLSEANSSFKEI-LRPNSTSWNTLISG 182



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 35/152 (23%)

Query: 2   IDILCNQRRLKEALQILHQISH-----------------------------------PSP 26
           +D+  N   ++EA ++ H++ +                                      
Sbjct: 384 VDLHANVGNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQ 443

Query: 27  SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86
            I SS+++ C    +L  GK++H      G++     +  L DMY KCG I ++  LFD 
Sbjct: 444 FIVSSILKVCSSLASLGCGKQIHGLCIKKGYQSEPVTATALGDMYVKCGEIDNSVVLFDG 503

Query: 87  MQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118
           M ERDV S+  +I GF + G +E+A   F +M
Sbjct: 504 MLERDVVSWTGIIVGFGQNGRVEEAFQYFHKM 535


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 259/477 (54%), Gaps = 43/477 (9%)

Query: 2   IDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           +  LC    L  A+ +L Q++     P+    +S++  C +      G+++H ++     
Sbjct: 209 VSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGI----GEQIHGYMLKVMG 264

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
              V+ S  L+D Y++ G+   A+T+F+ ++ ++V S+ +M+    + G L+ A  +F E
Sbjct: 265 SQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSE 324

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
           M           IS  V   QP                  N+F  S  LSA  ++ CL  
Sbjct: 325 M-----------ISEGV---QP------------------NEFAFSIALSACGSV-CL-- 349

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           G++IH   ++    +D  V +AL  MYG+ G ++E   +  K+ + D+VSWTA I   FQ
Sbjct: 350 GRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQ 409

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
            G  E+  AL  ++   G  PN + F+  L++CAD A    G+Q+H    ++G D     
Sbjct: 410 NGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCT 469

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            +AL++MYSKCG + +++  F+ M   D++SW SLI G AQ+G  + ALE F  +  S  
Sbjct: 470 GNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDW 529

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417
           +PD   F+ VL  C HAGLV +G  +F  + +++GLT T  HYAC++D+L R+GRF EA 
Sbjct: 530 RPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEAL 589

Query: 418 DVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +I  MP +PD  +W +LL  C++H NLD+ K AA+ L E+   + A+YV M+N+YA
Sbjct: 590 RMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASYVLMSNLYA 646



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 182/364 (50%), Gaps = 15/364 (4%)

Query: 99  ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS- 157
           + G  K G L  A +LFD MP+++  +WT  ISG  R  +P  A  ++  M   E+ V+ 
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADM--LESGVAP 134

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           N F  ++ L+A +A   L LG+++H   +R GF +D  + S L ++Y +CGS+  A ++F
Sbjct: 135 NDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVF 194

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277
            +M   DVV +T+++    + G       +  ++ + G++PN  T   +L  C       
Sbjct: 195 RRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAEC----PRG 250

Query: 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYA 337
           +G+Q+HGYM ++      +A++AL+  YS+ G+   +K VF  +   ++VSW S++    
Sbjct: 251 IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCI 310

Query: 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
           ++G  D AL  F  ++  G QP+   F   L+AC   G V  G Q  H    K  L    
Sbjct: 311 RDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC---GSVCLGRQ-IHCSAIKRDLMTDI 366

Query: 398 DHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457
                ++ +  RSG   E E V+ K+   PD   W + +     +G    +++A   L +
Sbjct: 367 RVSNALLSMYGRSGFVSELEAVLGKIE-NPDLVSWTAAISANFQNG---FSEKAVALLLQ 422

Query: 458 IEPE 461
           +  E
Sbjct: 423 MHSE 426


>gi|242043708|ref|XP_002459725.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
 gi|241923102|gb|EER96246.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
          Length = 691

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 254/457 (55%), Gaps = 5/457 (1%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P    Y  +++ C +   L  G+ VH     +G    +F  N L+ MYAKCG++  A+ +
Sbjct: 157 PDAFTYPKVLRACAETANLALGRAVHVRAADAGMDGHLFCQNALVSMYAKCGDVVAARGV 216

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYVRYNQP 139
           F+ M+ RDV S+N+MISG+   G   +A  LF  M     + ++ +W  +  GY++ +  
Sbjct: 217 FEGMEHRDVVSWNSMISGYAASGQWREAVELFRRMQAEGAEVNSVTWNTIAGGYIQMHDY 276

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199
             A+ L R M     S+ +  TL    +A S    LRLGKEIHG  +R      + V +A
Sbjct: 277 RAAVGLIRDMVRGGASI-DFVTLVIGSNACSRAGWLRLGKEIHGLAVRMQCHEIDSVINA 335

Query: 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259
           +  MY +C  +  A  +F  M    +V+W  MI  +      E    +F E++ S ++PN
Sbjct: 336 VITMYARCNDMEHALMLFRMMRCPGLVAWNTMIAGFALSDDAEAASRIFREMVCSDVQPN 395

Query: 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
             T    L  CA  A  + G+++H ++ + G+  Y    ++L+ MYSK G +  ++ VF+
Sbjct: 396 YVTVVTYLALCARVANLQHGRELHTHIIKQGFKGYRLLWNSLIDMYSKSGRLSVAQNVFD 455

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            M   D++S+TS+IAG+   G    +L +F+ ++ SG  PD I+ V VL+AC+H+GLVD+
Sbjct: 456 TMDDHDMISFTSMIAGFGMQGKGIVSLRFFKRMIDSGIMPDAIIMVTVLSACSHSGLVDE 515

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           G + F  + + +G+    +HY+C+VDL AR+G   +AE+++++ P  P   + A+L+G C
Sbjct: 516 GEELFDKMVKSYGIKPQMEHYSCMVDLYARAGLLEKAEELLNQTPFPPTSTMVAALVGAC 575

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
              GN+ + +R+A  L E++ +N   YV +AN+YA+A
Sbjct: 576 HEQGNIIIGERSARRLLEMKTDNAGHYVLIANMYAAA 612



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 37/353 (10%)

Query: 126 WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
           +  +IS  + +  P  AL  Y+ M + +    + FT   VL A +    L LG+ +H   
Sbjct: 126 YNVLISACLSHGLPRHALAAYQEMIDKDAVPPDAFTYPKVLRACAETANLALGRAVHVRA 185

Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
              G D      +AL  MY KCG +  AR +F+ M  RDVVSW +MI  Y   G+  E  
Sbjct: 186 ADAGMDGHLFCQNALVSMYAKCGDVVAARGVFEGMEHRDVVSWNSMISGYAASGQWREAV 245

Query: 246 ALFSELIKSGIRPNAFTFAGVL-----------------------------------NAC 270
            LF  +   G   N+ T+  +                                    NAC
Sbjct: 246 ELFRRMQAEGAEVNSVTWNTIAGGYIQMHDYRAAVGLIRDMVRGGASIDFVTLVIGSNAC 305

Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
           +      LGK++HG   R+         +A++ MY++C ++E++  +F  M  P LV+W 
Sbjct: 306 SRAGWLRLGKEIHGLAVRMQCHEIDSVINAVITMYARCNDMEHALMLFRMMRCPGLVAWN 365

Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
           ++IAG+A +   + A   F  ++ S  QP+++  V  L  C     +  G +  H+   K
Sbjct: 366 TMIAGFALSDDAEAASRIFREMVCSDVQPNYVTVVTYLALCARVANLQHGRE-LHTHIIK 424

Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            G       +  ++D+ ++SGR   A++V   M    D   + S++ G  + G
Sbjct: 425 QGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMD-DHDMISFTSMIAGFGMQG 476


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 236/419 (56%), Gaps = 22/419 (5%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N +L+ Y   G + DA  LF+ M  RD  S+N ++ G  + GSLE+AR +F+ MP RD  
Sbjct: 139 NTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVM 198

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS------VLSAVSAIQCLRLG 178
           SWT MISG  R     +A  L+  M    N VS    +S       +  A+     + + 
Sbjct: 199 SWTTMISGLARNGSVDDAWVLFDAMPE-RNVVSWNAMISGYARNHRIEEALDLFTKMPIR 257

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
                 IM TGF  ++               +  ARQ+FD+M  R+V++WT M+  Y Q 
Sbjct: 258 DVASWNIMITGFIQNK--------------DLKSARQLFDEMPKRNVITWTTMMNGYLQC 303

Query: 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298
            + E    LF+ ++  GI+PN  TF G L+AC++ AA   G+QVH  + +      +F  
Sbjct: 304 MQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVE 363

Query: 299 SALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358
           S L+++Y+KCG +  ++ VF+     DL+SW  +IA YA +G   +A+  ++ + ++G +
Sbjct: 364 STLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYK 423

Query: 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418
           P+   +VG+L+AC+HAGLVD+GL+ F S+ + + +    +HY C+VDL +R+GR  +A+ 
Sbjct: 424 PNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKR 483

Query: 419 VISKMPMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
           +IS   +KP    +W++LLGGC  HGN  +   AA+ L E EP+N  TY  + NIYASA
Sbjct: 484 LISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASA 542



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 43/224 (19%)

Query: 17  ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76
           +L Q   P+   +   +  C    AL EG++VH  +  +  +   F+ + L+++YAKCG 
Sbjct: 316 MLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGE 375

Query: 77  ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRY 136
           I  A+ +FD   E+D+ S+N                                +I+ Y  +
Sbjct: 376 IRLARNVFDFSMEKDLISWN-------------------------------GIIAAYAHH 404

Query: 137 NQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195
              IEA+ LY+ MQ  EN    N  T   +LSA S    +  G +I   +++   D+  V
Sbjct: 405 GFGIEAMHLYKNMQ--ENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVK---DNSIV 459

Query: 196 V----WSALSDMYGKCGSINEARQIFD--KMVDRDVVSWTAMIG 233
           V    ++ L D+  + G + +A+++    K+       W+A++G
Sbjct: 460 VRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLG 503


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 261/470 (55%), Gaps = 14/470 (2%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQ-FCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLD 69
           L  A ++  ++  P    Y+SLI  FCR N   E   +    +   G KP     + +  
Sbjct: 92  LPAAKEVFDRMDSPDVVGYTSLISAFCR-NGEFELAAEALIQMLKQGLKPN---EHTMTT 147

Query: 70  MYAKCGNISDAQT---LFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           +   C  +   Q    L  +  ++ + V S   +I  +++ G  + A+ +FD +  ++  
Sbjct: 148 ILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVV 207

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
           SW +M+  Y+R  +  EAL ++  M + E    N+F LS VL A  +I    LG+++H  
Sbjct: 208 SWCSMMQLYIRDGRLEEALQVFGDMIS-EGVDPNEFALSIVLGACGSIG---LGRQLHCS 263

Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
            ++    +D  V +AL  MYG+ G + E   + +K+ + D+VSWT  I   FQ G  E+ 
Sbjct: 264 AIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKA 323

Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
            AL  ++   G  PN + F+ VL++CAD A+ + G Q H    ++G D      +AL++M
Sbjct: 324 IALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINM 383

Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
           YSKCG + +++  F+ M   D+ SW SLI G+AQ+G  +KALE F  +  +G +PD   F
Sbjct: 384 YSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTF 443

Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
           +GVL  C H+G+V++G  +F  + +++  T    HYAC++D+L R+GRF EA  +I+ MP
Sbjct: 444 LGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 503

Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
            +PD  +W +LL  C++H NLD+ K AA+ L E+   + A+YV M+NIYA
Sbjct: 504 FEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYA 553



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 200/415 (48%), Gaps = 43/415 (10%)

Query: 36  CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSY 95
           C    AL  G++VHS    +GF    +I +CL++MY++CG++  A+ +FD M   DV  Y
Sbjct: 51  CADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGY 110

Query: 96  NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
            ++IS F + G  E A     +M                             + Q  +  
Sbjct: 111 TSLISAFCRNGEFELAAEALIQM-----------------------------LKQGLK-- 139

Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM-RTGFDSDEVVWS-ALSDMYGKCGSINEA 213
             N+ T++++L+A   +    LG++IHGY++ + G  S  V  S AL D Y + G    A
Sbjct: 140 -PNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLA 194

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273
           + +FD +  ++VVSW +M+  Y ++GR EE   +F ++I  G+ PN F  + VL AC   
Sbjct: 195 KAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSI 254

Query: 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLI 333
               LG+Q+H    +         ++AL+ MY + G VE  + + N +  PDLVSWT+ I
Sbjct: 255 G---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAI 311

Query: 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393
           +   QNG  +KA+     +   G  P+   F  VL++C     +D+G+Q FH +  K G 
Sbjct: 312 SANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGC 370

Query: 394 TYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
                    ++++ ++ G+   A      M    D   W SL+ G   HG+ + A
Sbjct: 371 DSEICTGNALINMYSKCGQMGSARLAFDVMHTH-DVTSWNSLIHGHAQHGDANKA 424



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 175/322 (54%), Gaps = 14/322 (4%)

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLR 176
           MP+++  +WT+++SGY R  +P  AL ++  M   E+ V+ N F  ++ L A + +  LR
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADM--VESGVAPNDFACNAALVACADLGALR 58

Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
            G+++H   +R GF  D  + S L +MY +CGS+  A+++FD+M   DVV +T++I  + 
Sbjct: 59  AGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFC 118

Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT-RIGYDPYS 295
           + G  E       +++K G++PN  T   +L AC       LG+Q+HGY+  +IG    S
Sbjct: 119 RNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQQIHGYLIKKIGLRSQS 174

Query: 296 -FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
            ++++AL+  YS+ G  + +K VF+ +   ++VSW S++  Y ++G  ++AL+ F  ++ 
Sbjct: 175 VYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMIS 234

Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
            G  P+      VL AC   GL   G Q  H    KH L         ++ +  R+G   
Sbjct: 235 EGVDPNEFALSIVLGACGSIGL---GRQ-LHCSAIKHDLITDIRVSNALLSMYGRTGLVE 290

Query: 415 EAEDVISKMPMKPDKFLWASLL 436
           E E +++K+   PD   W + +
Sbjct: 291 ELEAMLNKIE-NPDLVSWTTAI 311



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 119/281 (42%), Gaps = 25/281 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P+   +SS++  C    +L++G + H      G    +   N L++MY+KCG +  A+  
Sbjct: 337 PNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLA 396

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQP 139
           FD M   DV S+N++I G  + G   +A  +F +M     + D+ ++  ++ G       
Sbjct: 397 FDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMV 456

Query: 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK--EIHGYIMRTGFDSDEVVW 197
            E    +R+M +        FT +    A       R G+  E    I    F+ D ++W
Sbjct: 457 EEGELFFRLMID-----QYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIW 511

Query: 198 SALSDMYGKCGSINEARQIFDKMV---DRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254
             L        +++  +   D+++   DRD  S+  M   Y   G  E+   +   + ++
Sbjct: 512 KTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDET 571

Query: 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
           G++ +A         C   +  E+  +VH + +R    P S
Sbjct: 572 GVKKDA--------GC---SWIEINNEVHTFASRDMSHPNS 601


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 245/456 (53%), Gaps = 41/456 (8%)

Query: 21  ISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80
           ++ P    +  +++ C  N  +  G  VH  +   GF   V +    +D Y KC ++  A
Sbjct: 105 LARPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSA 164

Query: 81  QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140
           + +F EM ER+  S+  ++  + K G LE+A+++FD MP+R+  SW A++ G V+    +
Sbjct: 165 RKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLV 224

Query: 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200
            A  L+  M                                           D + ++++
Sbjct: 225 NAKKLFDEMPK----------------------------------------RDIISYTSM 244

Query: 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
            D Y K G +  AR +F++    DV +W+A+I  Y Q G+  E F +FSE+    ++P+ 
Sbjct: 245 IDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDE 304

Query: 261 FTFAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319
           F   G+++AC+     EL ++V  Y+  R+      +   AL+ M +KCG+++ + K+F 
Sbjct: 305 FIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFE 364

Query: 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379
            MP+ DLVS+ S++ G A +G   +A+  FE ++  G  PD + F  +L  C  + LV++
Sbjct: 365 EMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEE 424

Query: 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGC 439
           GL+YF  +++K+ +  + DHY+CIV+LL+R+G+  EA ++I  MP +     W SLLGGC
Sbjct: 425 GLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGC 484

Query: 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
            +HGN ++A+  A  LFE+EP++  +YV ++NIYA+
Sbjct: 485 SLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAA 520



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 175/365 (47%), Gaps = 25/365 (6%)

Query: 114 LFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173
           +F+ +P    + W  +I GY       E + +   M     +  +++T   V+   S   
Sbjct: 65  VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124

Query: 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIG 233
            +R+G  +HG ++R GFD D VV ++  D YGKC  +  AR++F +M +R+ VSWTA++ 
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184

Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE----LGKQVHGYMTRI 289
            Y + G  EE  ++F  + +  +        G  NA  D   +       K++   M + 
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNL--------GSWNALVDGLVKSGDLVNAKKLFDEMPKR 236

Query: 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
               Y    ++++  Y+K G++ +++ +F      D+ +W++LI GYAQNG P++A + F
Sbjct: 237 DIISY----TSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVF 292

Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406
             +     +PD  + VG+++AC+  G   L +K   Y H    K    Y       ++D+
Sbjct: 293 SEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVV---PALIDM 349

Query: 407 LARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPA 464
            A+ G    A  +  +MP + D   + S++ G  IHG    A R  E + +  I P+  A
Sbjct: 350 NAKCGHMDRAAKLFEEMPQR-DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVA 408

Query: 465 TYVTM 469
             V +
Sbjct: 409 FTVIL 413



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 157/328 (47%), Gaps = 35/328 (10%)

Query: 180 EIHGYIMRTGFDSDE-VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           +IH  I+R G + D+ ++   +S       S++ +  +F+++       W  +I  Y  +
Sbjct: 28  QIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGTYLWNHLIKGYSNK 87

Query: 239 GRREEGFALFSELIKSGI-RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
               E  ++   ++++G+ RP+ +TF  V+  C+++    +G  VHG + RIG+D     
Sbjct: 88  FLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVV 147

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
            ++ V  Y KC ++ +++KVF  MP  + VSWT+L+  Y ++G  ++A   F+L+ +   
Sbjct: 148 GTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNL 207

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA--DHYACIVDLL-------- 407
              + +  G++ +    G +    + F  + ++  ++YT+  D YA   D++        
Sbjct: 208 GSWNALVDGLVKS----GDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEE 263

Query: 408 ----------------ARSGRFHEAEDVISKM---PMKPDKFLWASLLGGCRIHGNLDLA 448
                           A++G+ +EA  V S+M    +KPD+F+   L+  C   G  +L 
Sbjct: 264 ARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELC 323

Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
           ++    L +   +  + YV  A I  +A
Sbjct: 324 EKVDSYLHQRMNKFSSHYVVPALIDMNA 351


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/446 (33%), Positives = 262/446 (58%), Gaps = 20/446 (4%)

Query: 41  ALEEGKKVHSHLKSSGF-KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMI 99
           ++++ +K+H+ L  +G  K  +  S  L    +  G+I+ A  +F +++  ++  +NT+I
Sbjct: 8   SMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTII 67

Query: 100 SGFTKGGSLEQARNLFDEM--------PQRDNFSWTAMISGYVRYNQPIEALDLY-RMMQ 150
            GF++  +   A +LF +M        PQR   ++ ++   Y +     E   L+ R+++
Sbjct: 68  RGFSQSSTPHNAISLFIDMMFTSPTTQPQR--LTYPSVFKAYAQLGLAHEGAQLHGRVIK 125

Query: 151 -NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS 209
              EN   ++F  +++L+    + C  LG+    +   TGFD   V W+ +     KCG 
Sbjct: 126 LGLEN---DQFIQNTILNMY--VNCGFLGEAQRIFDGATGFDV--VTWNTMIIGLAKCGE 178

Query: 210 INEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
           I+++R++FDKM+ R+ VSW +MI  Y ++GR  E   LFS + + GI+P+ FT   +LNA
Sbjct: 179 IDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNA 238

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSW 329
           CA   A   G+ +H Y+ +  +   S   +A++ MYSKCG+++ + +VF   P+  L  W
Sbjct: 239 CACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCW 298

Query: 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389
            SLI G A +G  ++A+  F  L  S  +PDH+ F+GVLTAC HAG+VD+   YF  + E
Sbjct: 299 NSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSE 358

Query: 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAK 449
            + +  +  HY+C+VD+L R+G   EAE++I  MP+ PD  +W SLL  CR +GN+++AK
Sbjct: 359 TYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAK 418

Query: 450 RAAEALFEIEPENPATYVTMANIYAS 475
           +AA+ + E++P   ++++ ++N+YA+
Sbjct: 419 QAAKRVNELDPNESSSFILLSNVYAA 444



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 174/321 (54%), Gaps = 3/321 (0%)

Query: 22  SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81
           + P    Y S+ +   Q     EG ++H  +   G +   FI N +L+MY  CG + +AQ
Sbjct: 93  TQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQ 152

Query: 82  TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141
            +FD     DV ++NTMI G  K G ++++R LFD+M  R+  SW +MISGYVR  +  E
Sbjct: 153 RIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFE 212

Query: 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201
           A++L+  MQ  E    ++FT+ S+L+A + +  LR G+ IH YI++  F  + +V +A+ 
Sbjct: 213 AMELFSRMQE-EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAII 271

Query: 202 DMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261
           DMY KCGSI++A Q+F     + +  W ++I      GR  E   LFS+L  S ++P+  
Sbjct: 272 DMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHV 331

Query: 262 TFAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNG 320
           +F GVL AC      +  K     M+     +P     S +V +  + G +E ++++   
Sbjct: 332 SFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKS 391

Query: 321 MP-RPDLVSWTSLIAGYAQNG 340
           MP  PD + W SL++   + G
Sbjct: 392 MPVNPDAIIWGSLLSSCREYG 412



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 6/169 (3%)

Query: 2   IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
           ID+      + +ALQ+         S ++SLI     +    E  ++ S L+SS  KP  
Sbjct: 271 IDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDH 330

Query: 62  FISNCLLDMYAKCGNISDAQTLFDEMQER-----DVCSYNTMISGFTKGGSLEQARNLFD 116
                +L      G +  A+  F  M E       +  Y+ M+    + G LE+A  L  
Sbjct: 331 VSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIK 390

Query: 117 EMP-QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164
            MP   D   W +++S    Y     A    + +   + + S+ F L S
Sbjct: 391 SMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLS 439


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 251/471 (53%), Gaps = 6/471 (1%)

Query: 11  LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
           ++ A     ++ H     ++++I  C Q+      + ++  ++  G  P       + + 
Sbjct: 156 VRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNA 215

Query: 71  YAKCGNISDAQTLF----DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
           Y     +S+ + ++      + E DV   N+ ++ F   G L  AR LF++M  RD  +W
Sbjct: 216 YGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTW 275

Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
             +I+ YV+     EA+ L+  +Q  +   +N  T   +L+  +++  L  GK IH  + 
Sbjct: 276 NIVITLYVQNENFGEAVRLFGRLQQ-DGVKANDITFVLMLNVYTSLTSLAKGKVIHELVK 334

Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
             G+D D VV +AL  +YG+C +  +A +IF  M  +DV++WT M   Y Q G R+E   
Sbjct: 335 EAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQ 394

Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
           LF E+   G RP + T   VL+ CA  AA + G+Q+H ++    +       +AL++MY 
Sbjct: 395 LFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYG 454

Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
           KCG +  +  VF  M + D++ W S++  YAQ+G  D+ L+ F  +   G + D + FV 
Sbjct: 455 KCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVS 514

Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-M 425
           VL+A +H+G V  G QYF ++ +   +T T + Y C+VDLL R+GR  EA D++ K+   
Sbjct: 515 VLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGC 574

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
            PD  LW +LLG CR H   D AK AAE + E +P +   YV ++N+YA+A
Sbjct: 575 LPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAA 625



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 215/450 (47%), Gaps = 40/450 (8%)

Query: 2   IDILCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
           I I C Q     AL + +Q+      P+   Y +++  C    +L++G ++H  +   GF
Sbjct: 77  IGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGF 136

Query: 58  KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117
           +  VF+   L++MY KCG++  A   F  ++ RDV S+                      
Sbjct: 137 EGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSW---------------------- 174

Query: 118 MPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
                    TAMI+  V+++Q   A  LYR MQ  +  V NK TL +V +A      L  
Sbjct: 175 ---------TAMIAACVQHDQFALARWLYRRMQ-LDGVVPNKITLYTVFNAYGDPNYLSE 224

Query: 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237
           GK ++G +     +SD  V ++  +M+G  G + +AR++F+ MVDRDVV+W  +I  Y Q
Sbjct: 225 GKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQ 284

Query: 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
                E   LF  L + G++ N  TF  +LN      +   GK +H  +   GYD  +  
Sbjct: 285 NENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVV 344

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
           A+AL+ +Y +C     + K+F  M   D+++WT +   YAQNG   +AL+ F+ +   G 
Sbjct: 345 ATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR 404

Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
           +P     V VL  C H   + KG Q + H I+ +  +    +    ++++  + G+  EA
Sbjct: 405 RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEA 462

Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLD 446
             V  KM  K D  +W S+LG    HG  D
Sbjct: 463 MSVFEKMA-KRDILVWNSMLGAYAQHGYYD 491



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 203/438 (46%), Gaps = 37/438 (8%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
           P  + + +L+Q C   + ++ G++VH H++  GF+    +   L+ MYA+CG        
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCG-------- 53

Query: 84  FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
                                  S+ +A+ +F+ + ++D F+WT MI  Y +      AL
Sbjct: 54  -----------------------SVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRAL 90

Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
            ++  MQ  E+ +  K T  ++L+A ++ + L+ G EIHG I++ GF+ D  V +AL +M
Sbjct: 91  GMFYQMQE-EDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINM 149

Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
           Y KCGS+  A   F ++  RDVVSWTAMI    Q  +      L+  +   G+ PN  T 
Sbjct: 150 YNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITL 209

Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
             V NA  D      GK V+G ++    +      ++ V+M+   G + +++++F  M  
Sbjct: 210 YTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVD 269

Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
            D+V+W  +I  Y QN    +A+  F  L + G + + I FV +L   T    + KG + 
Sbjct: 270 RDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKG-KV 328

Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
            H + ++ G    A     ++ L  R     +A  +   M  K D   W  +   C  + 
Sbjct: 329 IHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSK-DVITWTVM---CVAYA 384

Query: 444 NLDLAKRAAEALFEIEPE 461
                K A +   E++ E
Sbjct: 385 QNGFRKEALQLFQEMQLE 402



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 152/313 (48%), Gaps = 3/313 (0%)

Query: 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223
           ++L   S+ + +  G+ +H ++   GF+ + +V   L  MY +CGS+ EA+Q+F+ +  +
Sbjct: 9   ALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERK 68

Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283
           DV +WT MIG Y Q+G  +    +F ++ +  + P   T+  +LNACA   + + G ++H
Sbjct: 69  DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIH 128

Query: 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343
           G + + G++   F  +AL++MY+KCG+V  +   F  +   D+VSWT++IA   Q+    
Sbjct: 129 GQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFA 188

Query: 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403
            A   +  +   G  P+ I    V  A      + +G ++ + +     +          
Sbjct: 189 LARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVMESDVRVMNSA 247

Query: 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE-N 462
           V++   +G   +A  +   M +  D   W  ++     + N   A R    L +   + N
Sbjct: 248 VNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKAN 306

Query: 463 PATYVTMANIYAS 475
             T+V M N+Y S
Sbjct: 307 DITFVLMLNVYTS 319


>gi|357128364|ref|XP_003565843.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Brachypodium distachyon]
          Length = 728

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 245/437 (56%), Gaps = 31/437 (7%)

Query: 42  LEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISG 101
           L  G++VH+     G     +++N L  +YA+ G++  A      M  RDV ++ T+IS 
Sbjct: 234 LSRGREVHALCAKLGLDATPYVANTLATLYARWGDVGRALAAVGRMGSRDVAAWTTVISS 293

Query: 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161
           + + G  ++A   F  M +                N+ + A            +  N++T
Sbjct: 294 YVQTGRAKEAIEAFVAMVR----------------NEAVNA------------ASPNEYT 325

Query: 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKM 220
            ++V++A +   C+ LG+++HG + + GF S   V ++L  +Y +  G ++ A  +F + 
Sbjct: 326 YAAVIAACADTSCVCLGEQLHGQVAQRGFASARSVANSLVTLYARVAGRLSAADAVFQES 385

Query: 221 VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI-RPNAFTFAGVLNACADHAAEELG 279
             +DVVSW+A+I  Y QEG   E FALF+E+ +    RPN FT A +L+ CA  A  + G
Sbjct: 386 AAKDVVSWSAIISGYAQEGLAGEAFALFTEMRRHHCPRPNEFTLASLLSVCATAATLDAG 445

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           +Q+H  +   G + ++   SALV MY K G++ ++  VF+   + D+VSWT++I G+A++
Sbjct: 446 RQLHALVMAAGLEHHAMIRSALVDMYGKSGSMSDADVVFSNRTKDDVVSWTAMIVGHAEH 505

Query: 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399
           G   +ALE FE +   G +PDH+ F+GVL+AC HAG V+ GL+Y  ++ + +GL    +H
Sbjct: 506 GQSKRALELFEEMCLVGLKPDHVAFIGVLSACCHAGEVELGLRYLSAMSKIYGLEPAKEH 565

Query: 400 YACIVDLLARSGRFHEAEDVISKMPM-KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458
           Y C+VDLL R+GR +EAE++I +M   + D  +W SLL  C   G  +  K+AA    E 
Sbjct: 566 YGCVVDLLGRAGRINEAEELIGRMAANERDGVVWTSLLRACAARGEEETGKKAAARAMEA 625

Query: 459 EPENPATYVTMANIYAS 475
           EP     +V MAN+YAS
Sbjct: 626 EPWGAGAHVAMANLYAS 642



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 96  NTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153
             +   + K G L  A  +FDEMP  +R+  SWT +++   R  +  +AL  +  M+   
Sbjct: 153 TALADAYAKAGRLALALRVFDEMPAARRNVVSWTTLVAALSRAGRRHDALRAFAEMRASA 212

Query: 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213
               +    ++ L+A +    L  G+E+H    + G D+   V + L+ +Y + G +  A
Sbjct: 213 GVACDSHAYAAALTACADAGMLSRGREVHALCAKLGLDATPYVANTLATLYARWGDVGRA 272

Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK----SGIRPNAFTFAGVLNA 269
                +M  RDV +WT +I  Y Q GR +E    F  +++    +   PN +T+A V+ A
Sbjct: 273 LAAVGRMGSRDVAAWTTVISSYVQTGRAKEAIEAFVAMVRNEAVNAASPNEYTYAAVIAA 332

Query: 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK-CGNVENSKKVFNGMPRPDLVS 328
           CAD +   LG+Q+HG + + G+      A++LV +Y++  G +  +  VF      D+VS
Sbjct: 333 CADTSCVCLGEQLHGQVAQRGFASARSVANSLVTLYARVAGRLSAADAVFQESAAKDVVS 392

Query: 329 WTSLIAGYAQNGMPDKALEYF-ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387
           W+++I+GYAQ G+  +A   F E+      +P+      +L+ C  A  +D G Q  H++
Sbjct: 393 WSAIISGYAQEGLAGEAFALFTEMRRHHCPRPNEFTLASLLSVCATAATLDAGRQ-LHAL 451

Query: 388 KEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDL 447
               GL + A   + +VD+  +SG   +A DV+     K D   W +++ G   HG    
Sbjct: 452 VMAAGLEHHAMIRSALVDMYGKSGSMSDA-DVVFSNRTKDDVVSWTAMIVGHAEHGQ--- 507

Query: 448 AKRAAEALFE 457
           +KRA E LFE
Sbjct: 508 SKRALE-LFE 516



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 156/321 (48%), Gaps = 35/321 (10%)

Query: 24  PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK-CGNISDAQT 82
           P+   Y+++I  C     +  G+++H  +   GF     ++N L+ +YA+  G +S A  
Sbjct: 321 PNEYTYAAVIAACADTSCVCLGEQLHGQVAQRGFASARSVANSLVTLYARVAGRLSAADA 380

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +F E   +DV S++ +ISG+ + G   +A  LF EM                R++ P   
Sbjct: 381 VFQESAAKDVVSWSAIISGYAQEGLAGEAFALFTEMR---------------RHHCP--- 422

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
                          N+FTL+S+LS  +    L  G+++H  +M  G +   ++ SAL D
Sbjct: 423 -------------RPNEFTLASLLSVCATAATLDAGRQLHALVMAAGLEHHAMIRSALVD 469

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MYGK GS+++A  +F      DVVSWTAMI  + + G+ +    LF E+   G++P+   
Sbjct: 470 MYGKSGSMSDADVVFSNRTKDDVVSWTAMIVGHAEHGQSKRALELFEEMCLVGLKPDHVA 529

Query: 263 FAGVLNACADHAAEELGKQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F GVL+AC      ELG +    M++I G +P       +V +  + G +  ++++   M
Sbjct: 530 FIGVLSACCHAGEVELGLRYLSAMSKIYGLEPAKEHYGCVVDLLGRAGRINEAEELIGRM 589

Query: 322 P--RPDLVSWTSLIAGYAQNG 340
                D V WTSL+   A  G
Sbjct: 590 AANERDGVVWTSLLRACAARG 610



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 172/384 (44%), Gaps = 38/384 (9%)

Query: 65  NCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNF 124
           N  L    + G ++DA +LFD    RD  SY+ +++G    G    A  LF         
Sbjct: 44  NARLKRLVQSGRLADAHSLFDGAPHRDEASYSALLAGHAAAGDFAGAMALF--------- 94

Query: 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL--GKEIH 182
                +      ++P++A D               F LS V  A +A   L L     +H
Sbjct: 95  ---VRLRRTSSSSRPLDAAD--------------PFVLSLVFKASAADPGLLLPHAASLH 137

Query: 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM--VDRDVVSWTAMIGRYFQEGR 240
            + +R+   S   V +AL+D Y K G +  A ++FD+M    R+VVSWT ++    + GR
Sbjct: 138 AFAVRSSALSSVFVATALADAYAKAGRLALALRVFDEMPAARRNVVSWTTLVAALSRAGR 197

Query: 241 REEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
           R +    F+E+  S G+  ++  +A  L ACAD      G++VH    ++G D   + A+
Sbjct: 198 RHDALRAFAEMRASAGVACDSHAYAAALTACADAGMLSRGREVHALCAKLGLDATPYVAN 257

Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK----S 355
            L  +Y++ G+V  +      M   D+ +WT++I+ Y Q G   +A+E F  +++    +
Sbjct: 258 TLATLYARWGDVGRALAAVGRMGSRDVAAWTTVISSYVQTGRAKEAIEAFVAMVRNEAVN 317

Query: 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR-SGRFH 414
              P+   +  V+ AC     V  G Q  H    + G          +V L AR +GR  
Sbjct: 318 AASPNEYTYAAVIAACADTSCVCLGEQ-LHGQVAQRGFASARSVANSLVTLYARVAGRLS 376

Query: 415 EAEDVISKMPMKPDKFLWASLLGG 438
            A+ V  +   K D   W++++ G
Sbjct: 377 AADAVFQESAAK-DVVSWSAIISG 399



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 41/232 (17%)

Query: 19  HQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78
           H    P+    +SL+  C     L+ G+++H+ + ++G +    I + L+DMY K G++S
Sbjct: 419 HHCPRPNEFTLASLLSVCATAATLDAGRQLHALVMAAGLEHHAMIRSALVDMYGKSGSMS 478

Query: 79  DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM----PQRDNFSWTAMISGYV 134
           DA  +F    + DV S+  MI G  + G  ++A  LF+EM     + D+ ++  ++S   
Sbjct: 479 DADVVFSNRTKDDVVSWTAMIVGHAEHGQSKRALELFEEMCLVGLKPDHVAFIGVLSACC 538

Query: 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194
              + +E    Y                   LSA+S I  L   KE +G ++        
Sbjct: 539 HAGE-VELGLRY-------------------LSAMSKIYGLEPAKEHYGCVV-------- 570

Query: 195 VVWSALSDMYGKCGSINEARQIFDKMV--DRDVVSWTAMIGRYFQEGRREEG 244
                  D+ G+ G INEA ++  +M   +RD V WT+++      G  E G
Sbjct: 571 -------DLLGRAGRINEAEELIGRMAANERDGVVWTSLLRACAARGEEETG 615


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 241/409 (58%), Gaps = 32/409 (7%)

Query: 98  MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157
           ++S + K   L  A +LFDE P+RD + ++++++       P  AL + R M + +    
Sbjct: 44  LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 103

Query: 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF 217
           + F +SSV S  + ++  RLG+++H + + + ++ D+VV S+L DMY KCGS ++ R++F
Sbjct: 104 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 163

Query: 218 DKMVDRDVVSWTAMIGRYFQEGRREEGFALFS---------------------------- 249
           D M  ++ V WTA++  Y   GR EE   LF                             
Sbjct: 164 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 223

Query: 250 ---ELIKSGIR-PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
              E+ + G+R  +AF  + V+   AD AA  LG+Q+HG   R+G+       +AL+ MY
Sbjct: 224 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 283

Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
           SKC ++ ++++VF G+   D++SWT+++ G AQ+G  ++AL  ++ ++ +G +P+ + FV
Sbjct: 284 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFV 343

Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
           G++ AC+HAGLV KG Q F S+K ++G+T    HY C +DLL+RSG   EAE++++ MP 
Sbjct: 344 GLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPY 403

Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
           +PD+  W +LL  C  + + ++  R ++ L E+ P++ +TY+ ++N+YA
Sbjct: 404 EPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYA 452



 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 174/315 (55%), Gaps = 2/315 (0%)

Query: 23  HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQT 82
           HP   + SS+     + R+   G+++H+H   S +     + + L+DMY KCG+  D + 
Sbjct: 102 HPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRK 161

Query: 83  LFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142
           +FD M  ++   +  ++SG+   G  E+A  LF  MP R+ F+WTA+ISG V   + + A
Sbjct: 162 VFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGA 221

Query: 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202
           ++L+  M+     + + F LS V+   + +    LG+++HG  MR GF S+ +V +AL D
Sbjct: 222 VELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALID 281

Query: 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262
           MY KC  I  AR++F+ +  RDV+SWT M+    Q GR EE  AL+  ++ +G +PN  T
Sbjct: 282 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 341

Query: 263 FAGVLNACADHAAEELGKQVHGYM-TRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
           F G++ AC+     + G+Q+   M    G  P     +  + + S+ G++  ++++   M
Sbjct: 342 FVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM 401

Query: 322 P-RPDLVSWTSLIAG 335
           P  PD  +W +L++ 
Sbjct: 402 PYEPDEATWGALLSA 416



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238
           + +H  I++ G        +AL   Y K   + +A  +FD+   RD+  +++++      
Sbjct: 23  RGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHS 82

Query: 239 GRREEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297
              E    +   ++ +  + P+ F  + V +  A   +  LG+Q+H +     Y+     
Sbjct: 83  ASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVV 142

Query: 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
            S+LV MY KCG+ ++ +KVF+ M   + V WT+L++GYA NG  ++AL+ F
Sbjct: 143 KSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLF 194



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 42/195 (21%)

Query: 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN 339
           + +H  + + G   +    +ALV  Y+K   + ++  +F+  PR D+  ++SL+   + +
Sbjct: 23  RGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHS 82

Query: 340 GMPDKALEYFELLLKS-GTQPDHIVFVGVLTACT-----------HAGLV---------- 377
             P+ AL     +L +    PDH V   V +              HA  V          
Sbjct: 83  ASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVV 142

Query: 378 --------------DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423
                         D G + F S+  K+ + +TA     +V   A +GR  EA  +   M
Sbjct: 143 KSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTA-----LVSGYASNGRSEEALQLFRSM 197

Query: 424 PMKPDKFLWASLLGG 438
           P + + F W +L+ G
Sbjct: 198 PGR-NLFAWTALISG 211


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,578,995,324
Number of Sequences: 23463169
Number of extensions: 312299351
Number of successful extensions: 926003
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9165
Number of HSP's successfully gapped in prelim test: 2941
Number of HSP's that attempted gapping in prelim test: 714272
Number of HSP's gapped (non-prelim): 65213
length of query: 476
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 330
effective length of database: 8,933,572,693
effective search space: 2948078988690
effective search space used: 2948078988690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)