BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038936
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYP|A Chain A, Crystal Structure Of Rv0805 D66a Mutant
Length = 280
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 322 PRPDLV----SWTSLIAG----YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370
PRPD V S T LI G Y D+ E E L +SG +PD IVF G L A
Sbjct: 12 PRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLAA 68
>pdb|2INP|A Chain A, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|B Chain B, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 494
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI-NEARQIFDKMVDRDVVSWTAMIG 233
+ LG E+ +I+ D+ +V + + + + + + D M+ V+SW+
Sbjct: 232 MTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSWSEAWE 291
Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
Y+++ G ALF +L + GIRP + V N H + +L + Y
Sbjct: 292 VYYEQN----GGALFKDLERYGIRPPKYQ--DVANDAKHHLSHQLWTTFYQY 337
>pdb|3U52|A Chain A, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|B Chain B, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 511
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI-NEARQIFDKMVDRDVVSWTAMIG 233
+ LG E+ +I+ D+ +V + + + + + + D M+ V+SW+
Sbjct: 237 MTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSWSEAWE 296
Query: 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285
Y+++ G ALF +L + GIRP + V N H + +L + Y
Sbjct: 297 VYYEQN----GGALFKDLERYGIRPPKYQ--DVANDAKHHLSHQLWTTFYQY 342
>pdb|3IB7|A Chain A, Crystal Structure Of Full Length Rv0805
pdb|3IB8|A Chain A, Crystal Structure Of Full Length Rv0805 In Complex With
5'-amp
Length = 330
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 322 PRPDLV----SWTSLIAG----YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
PRPD V S T LI G Y D+ E E L +SG +PD IVF G L
Sbjct: 22 PRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDL 76
>pdb|2HY1|A Chain A, Crystal Structure Of Rv0805
Length = 280
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 322 PRPDLV----SWTSLIAG----YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
PRPD V S T LI G Y D+ E E L +SG +PD IVF G L
Sbjct: 12 PRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDL 66
>pdb|2HYO|A Chain A, Crystal Structure Of Rv0805 N97a Mutant
Length = 280
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 322 PRPDLV----SWTSLIAG----YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368
PRPD V S T LI G Y D+ E E L +SG +PD IVF G L
Sbjct: 12 PRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDL 66
>pdb|3UYX|A Chain A, Crystal Structures Of Globular Head Of 2009 Pandemic H1n1
Hemagglutinin
pdb|3UYX|B Chain B, Crystal Structures Of Globular Head Of 2009 Pandemic H1n1
Hemagglutinin
Length = 214
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 63 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 111
>pdb|3UYW|A Chain A, Crystal Structures Of Globular Head Of 2009 Pandemic H1n1
Hemagglutinin
pdb|3UYW|B Chain B, Crystal Structures Of Globular Head Of 2009 Pandemic H1n1
Hemagglutinin
pdb|3UYW|C Chain C, Crystal Structures Of Globular Head Of 2009 Pandemic H1n1
Hemagglutinin
pdb|3UYW|D Chain D, Crystal Structures Of Globular Head Of 2009 Pandemic H1n1
Hemagglutinin
Length = 214
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 63 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 111
>pdb|3MLH|A Chain A, Crystal Structure Of The 2009 H1n1 Influenza Virus
Hemagglutinin Receptor-Binding Domain
pdb|3MLH|B Chain B, Crystal Structure Of The 2009 H1n1 Influenza Virus
Hemagglutinin Receptor-Binding Domain
Length = 235
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 76 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 124
>pdb|3LZG|A Chain A, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|C Chain C, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|E Chain E, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|G Chain G, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|I Chain I, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|K Chain K, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
Length = 329
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 112 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 160
>pdb|3ZTN|A Chain A, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H1 Influenza Haemagglutinin
Length = 327
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 110 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 158
>pdb|3AL4|A Chain A, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|C Chain C, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|E Chain E, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|G Chain G, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|I Chain I, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|K Chain K, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
Length = 333
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 116 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 164
>pdb|3M6S|A Chain A, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|C Chain C, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|E Chain E, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|G Chain G, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|I Chain I, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|K Chain K, Crystal Structure Of H1n1pdm Hemagglutinin
Length = 331
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 114 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 162
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN----GMPRPD 325
Y T IGY F S L +Y K E +KK+F+ G+PR D
Sbjct: 33 YTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKD 77
>pdb|3UBE|A Chain A, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|C Chain C, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|E Chain E, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|G Chain G, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|I Chain I, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|K Chain K, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBJ|A Chain A, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|C Chain C, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|E Chain E, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|G Chain G, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|I Chain I, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|K Chain K, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBN|A Chain A, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|C Chain C, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|E Chain E, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|G Chain G, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|I Chain I, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|K Chain K, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBQ|A Chain A, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|C Chain C, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|E Chain E, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|G Chain G, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|I Chain I, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|K Chain K, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
Length = 329
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQY 383
+ E FE+ K+ + P+H GV AC HAG LV KG Y
Sbjct: 112 SFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSY 160
>pdb|3EF2|A Chain A, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium.
pdb|3EF2|B Chain B, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium.
pdb|3EF2|C Chain C, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium.
pdb|3EF2|D Chain D, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium
Length = 293
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI----KSGIRPNAFTFAGVLNA 269
QI+D D ++ A +G++ + + GFA+F ++ K+G +A+ F
Sbjct: 210 EQIYDX--DDFAIAMKAAVGKWGADSWKANGFAIFCGVMLGVNKAGDAAHAYNFT----L 263
Query: 270 CADHAAEELGK-QVHGYMTRIGYDPY 294
DHA + Q GY+ IGYD Y
Sbjct: 264 TKDHADIVFFEPQNGGYLNDIGYDSY 289
>pdb|2IHO|A Chain A, Crystal Structure Of Moa, A Lectin From The Mushroom
Marasmius Oreades In Complex With The Trisaccharide
Gal(1,3)gal(1,4)glcnac
Length = 293
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 214 RQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELI----KSGIRPNAFTFAGVLNA 269
QI+D D ++ A +G++ + + GFA+F ++ K+G +A+ F
Sbjct: 210 EQIYD--CDDFAIAMKAAVGKWGADSWKANGFAIFCGVMLGVNKAGDAAHAYNFT----L 263
Query: 270 CADHAAEELGK-QVHGYMTRIGYDPY 294
DHA + Q GY+ IGYD Y
Sbjct: 264 TKDHADIVFFEPQNGGYLNDIGYDSY 289
>pdb|2WRG|H Chain H, Structure Of H1 1918 Hemagglutinin With Human Receptor
pdb|2WRG|J Chain J, Structure Of H1 1918 Hemagglutinin With Human Receptor
pdb|2WRG|L Chain L, Structure Of H1 1918 Hemagglutinin With Human Receptor
Length = 326
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
+ E FE+ K+ + P+H GV AC++AG
Sbjct: 110 SFEKFEIFPKTSSWPNHETTKGVTAACSYAG 140
>pdb|3GBN|A Chain A, Crystal Structure Of Fab Cr6261 In Complex With The 1918
H1n1 Influenza Virus Hemagglutinin
pdb|3LZF|A Chain A, Crystal Structure Of Fab 2d1 In Complex With The 1918
Influenza Virus Hemagglutinin
pdb|3R2X|A Chain A, Crystal Structure Of The De Novo Designed Binding Protein
Hb36.3 In Complex The The 1918 Influenza Virus
Hemagglutinin
pdb|4EEF|A Chain A, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|C Chain C, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|E Chain E, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4GXU|A Chain A, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|C Chain C, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|E Chain E, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|G Chain G, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|I Chain I, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|K Chain K, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
Length = 331
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
+ E FE+ K+ + P+H GV AC++AG
Sbjct: 114 SFEKFEIFPKTSSWPNHETTKGVTAACSYAG 144
>pdb|1RUZ|H Chain H, 1918 H1 Hemagglutinin
pdb|1RUZ|J Chain J, 1918 H1 Hemagglutinin
pdb|1RUZ|L Chain L, 1918 H1 Hemagglutinin
Length = 328
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
+ E FE+ K+ + P+H GV AC++AG
Sbjct: 114 SFEKFEIFPKTSSWPNHETTKGVTAACSYAG 144
>pdb|1RD8|A Chain A, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
pdb|1RD8|C Chain C, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
pdb|1RD8|E Chain E, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
Length = 335
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
+ E FE+ K+ + P+H GV AC++AG
Sbjct: 118 SFEKFEIFPKTSSWPNHETTKGVTAACSYAG 148
>pdb|4GXX|A Chain A, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
pdb|4GXX|C Chain C, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
pdb|4GXX|E Chain E, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
Length = 331
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375
+ E FE+ K+ + P+H GV AC++AG
Sbjct: 114 SFEKFEIFPKTSSWPNHETTKGVTAACSYAG 144
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
AG N + AA KQ+ + + G D FA Y++ GN NG +
Sbjct: 92 AGFANFPSQQAASAFAKQLSDAVAKYGLDGVDFA-----DEYAEYGN--------NGTAQ 138
Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFEL 351
P+ S+ L+ N MPDK + + +
Sbjct: 139 PNDSSFVHLVTALRAN-MPDKIISLYNI 165
>pdb|3A9R|A Chain A, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|B Chain B, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|C Chain C, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9S|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9T|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
Length = 595
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMP 342
FNG RP V +++AGY Q G+P
Sbjct: 115 FNGTERPGAVYLAAVLAGYNQKGLP 139
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGF--ALFS------ELIKSGIRPNAFTFAGVL 267
FD ++ W AM R + G EEG+ A++ EL R +F +
Sbjct: 3 TFDHSLEAQWTKWKAMHNRLY--GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAM 60
Query: 268 NACADHAAEELGKQVHGYMTR 288
NA D +EE + ++G+ R
Sbjct: 61 NAFGDMTSEEFRQVMNGFQNR 81
>pdb|3BG2|A Chain A, Crystal Structure Of Deoxyguanosinetriphosphate
Triphosphohydrolase From Flavobacterium Sp. Med217
pdb|3BG2|B Chain B, Crystal Structure Of Deoxyguanosinetriphosphate
Triphosphohydrolase From Flavobacterium Sp. Med217
Length = 444
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 16 QILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGF 57
Q+L H S+Y +LIQ C + + +GK + ++ K G
Sbjct: 400 QLLAPNDHSEKSLYENLIQICAEVSTMTDGKALRNYKKIKGL 441
>pdb|2W37|A Chain A, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|B Chain B, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|C Chain C, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
Length = 359
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
E + K+GT D ++F+ L A + QY IKEK+G+T AR
Sbjct: 277 EAMKKTGTPDDQLIFMHCLPAFHNTDT-----QYGKEIKEKYGITEMEVTDEVFTSKYAR 331
Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
+F EAE+ + + K + A+ LG I
Sbjct: 332 --QFEEAENRMHSI-----KAMMAATLGNLFI 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,536,972
Number of Sequences: 62578
Number of extensions: 604660
Number of successful extensions: 1334
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1311
Number of HSP's gapped (non-prelim): 33
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)