Query 038936
Match_columns 476
No_of_seqs 661 out of 1812
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 04:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8.2E-73 1.8E-77 560.5 52.9 473 1-476 228-704 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-69 4.2E-74 524.1 50.7 452 24-476 85-541 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.5E-69 1.2E-73 533.2 51.1 469 1-475 127-601 (857)
4 PLN03218 maturation of RBCL 1; 100.0 9.7E-65 2.1E-69 493.6 51.3 466 2-473 377-892 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7E-64 1.5E-68 487.6 51.1 455 2-459 413-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-59 2.4E-64 456.1 43.7 446 1-459 93-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.9E-33 1.5E-37 282.2 51.3 464 3-475 371-883 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-32 2.8E-37 280.3 51.9 460 5-474 339-815 (899)
9 PRK11447 cellulose synthase su 100.0 3.9E-25 8.6E-30 225.6 51.0 462 3-475 36-649 (1157)
10 PRK11447 cellulose synthase su 100.0 2.5E-24 5.4E-29 219.8 51.1 460 4-474 121-722 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 4.5E-25 9.7E-30 192.7 31.7 432 29-472 51-499 (966)
12 PRK09782 bacteriophage N4 rece 99.9 2.7E-22 5.9E-27 196.0 47.5 448 7-475 56-689 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.6E-24 9.9E-29 186.4 29.6 425 5-441 58-502 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 6.4E-21 1.4E-25 183.2 42.2 419 29-464 130-577 (615)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-20 5.6E-25 179.1 45.0 410 4-423 136-568 (615)
16 PRK10049 pgaA outer membrane p 99.9 2E-20 4.3E-25 183.0 43.6 399 26-467 15-465 (765)
17 PRK09782 bacteriophage N4 rece 99.9 1.3E-19 2.9E-24 177.4 47.1 423 37-475 55-655 (987)
18 PRK11788 tetratricopeptide rep 99.9 3.3E-21 7.2E-26 176.2 32.3 260 194-457 69-346 (389)
19 PRK15174 Vi polysaccharide exp 99.9 3E-20 6.4E-25 177.9 38.0 342 73-423 17-378 (656)
20 PRK14574 hmsH outer membrane p 99.9 8.4E-19 1.8E-23 168.4 46.1 433 25-466 33-521 (822)
21 PRK11788 tetratricopeptide rep 99.9 6.6E-21 1.4E-25 174.2 30.2 288 72-397 46-353 (389)
22 PRK15174 Vi polysaccharide exp 99.9 7.5E-20 1.6E-24 175.2 37.5 352 104-463 17-386 (656)
23 KOG2002 TPR-containing nuclear 99.9 2.7E-19 5.9E-24 164.8 36.6 442 23-473 267-760 (1018)
24 PRK10049 pgaA outer membrane p 99.9 3.9E-19 8.4E-24 174.0 38.1 406 2-436 22-467 (765)
25 KOG2002 TPR-containing nuclear 99.9 7.1E-18 1.5E-22 155.6 37.9 409 60-475 269-728 (1018)
26 PRK14574 hmsH outer membrane p 99.9 4.1E-17 8.9E-22 156.9 44.0 423 4-434 43-522 (822)
27 KOG2076 RNA polymerase III tra 99.8 4.4E-16 9.5E-21 143.0 43.0 182 5-187 149-344 (895)
28 KOG2003 TPR repeat-containing 99.8 1.2E-18 2.5E-23 147.6 23.5 440 28-473 203-704 (840)
29 KOG4422 Uncharacterized conser 99.8 5.8E-15 1.3E-19 124.5 37.5 415 25-459 115-591 (625)
30 KOG0495 HAT repeat protein [RN 99.8 1.1E-13 2.4E-18 123.0 44.7 447 10-472 391-860 (913)
31 KOG1915 Cell cycle control pro 99.8 5.3E-14 1.1E-18 120.3 41.1 445 7-457 85-584 (677)
32 KOG0495 HAT repeat protein [RN 99.8 9E-14 2E-18 123.5 42.7 454 4-470 415-892 (913)
33 KOG1155 Anaphase-promoting com 99.7 3.7E-13 8E-18 114.9 37.0 357 91-461 163-539 (559)
34 PRK10747 putative protoheme IX 99.7 9.2E-14 2E-18 125.8 33.8 252 201-459 125-391 (398)
35 KOG1173 Anaphase-promoting com 99.7 8.5E-14 1.8E-18 121.7 31.4 279 191-472 241-532 (611)
36 KOG1126 DNA-binding cell divis 99.7 4E-15 8.8E-20 132.5 22.5 281 174-464 334-626 (638)
37 KOG1155 Anaphase-promoting com 99.7 5.9E-13 1.3E-17 113.7 34.3 383 58-459 161-554 (559)
38 KOG2003 TPR repeat-containing 99.7 4.6E-14 1E-18 120.1 27.4 398 4-411 246-708 (840)
39 KOG0547 Translocase of outer m 99.7 1.1E-13 2.4E-18 118.8 29.7 413 29-460 118-568 (606)
40 TIGR00540 hemY_coli hemY prote 99.7 1E-13 2.2E-18 126.4 31.6 256 199-457 123-398 (409)
41 KOG4422 Uncharacterized conser 99.7 5.3E-13 1.1E-17 112.9 32.8 247 17-295 198-468 (625)
42 KOG1915 Cell cycle control pro 99.7 5.5E-12 1.2E-16 108.3 39.2 432 32-474 79-551 (677)
43 KOG2076 RNA polymerase III tra 99.7 5.1E-13 1.1E-17 123.2 35.1 347 106-457 153-554 (895)
44 PF13429 TPR_15: Tetratricopep 99.7 1.2E-16 2.6E-21 138.3 11.0 251 199-457 13-276 (280)
45 PRK10747 putative protoheme IX 99.7 8.3E-14 1.8E-18 126.1 29.2 247 170-423 129-387 (398)
46 PF13429 TPR_15: Tetratricopep 99.7 5.1E-16 1.1E-20 134.4 13.6 253 31-286 13-274 (280)
47 KOG1174 Anaphase-promoting com 99.7 2.4E-12 5.2E-17 108.4 33.0 398 64-470 100-512 (564)
48 KOG2376 Signal recognition par 99.7 1.6E-11 3.4E-16 108.3 38.6 432 28-475 14-504 (652)
49 KOG1126 DNA-binding cell divis 99.7 2.5E-14 5.4E-19 127.6 20.8 161 193-388 454-618 (638)
50 TIGR00540 hemY_coli hemY prote 99.6 3.7E-13 8E-18 122.6 28.4 284 135-423 96-396 (409)
51 COG2956 Predicted N-acetylgluc 99.6 8.6E-13 1.9E-17 107.6 26.9 260 194-457 69-346 (389)
52 KOG0547 Translocase of outer m 99.6 1E-12 2.3E-17 113.0 28.5 388 66-473 120-547 (606)
53 COG3071 HemY Uncharacterized e 99.6 7.6E-12 1.6E-16 105.3 31.4 286 136-457 97-389 (400)
54 KOG1173 Anaphase-promoting com 99.6 1.6E-11 3.4E-16 107.8 31.3 437 24-474 14-500 (611)
55 COG3071 HemY Uncharacterized e 99.6 2E-11 4.3E-16 102.9 28.2 276 104-388 96-388 (400)
56 COG2956 Predicted N-acetylgluc 99.5 2.9E-11 6.3E-16 98.8 26.6 262 38-305 47-325 (389)
57 KOG4162 Predicted calmodulin-b 99.5 4.8E-10 1E-14 102.3 36.0 426 24-464 321-789 (799)
58 KOG2047 mRNA splicing factor [ 99.5 2.7E-09 5.8E-14 95.6 39.7 378 3-389 110-614 (835)
59 KOG3785 Uncharacterized conser 99.5 1.6E-11 3.5E-16 101.5 23.8 416 3-432 30-497 (557)
60 KOG1129 TPR repeat-containing 99.5 1.4E-12 3.1E-17 106.5 14.7 236 229-469 227-469 (478)
61 KOG4162 Predicted calmodulin-b 99.5 1.3E-09 2.8E-14 99.6 34.2 379 90-474 321-765 (799)
62 KOG3785 Uncharacterized conser 99.5 1.7E-09 3.7E-14 89.9 31.9 409 33-461 29-493 (557)
63 TIGR02521 type_IV_pilW type IV 99.4 4.3E-11 9.2E-16 101.4 22.0 200 226-460 32-234 (234)
64 KOG2047 mRNA splicing factor [ 99.4 5.7E-08 1.2E-12 87.3 40.4 94 26-119 102-196 (835)
65 PRK12370 invasion protein regu 99.4 6.6E-11 1.4E-15 112.2 22.8 143 276-423 320-467 (553)
66 TIGR02521 type_IV_pilW type IV 99.4 1.1E-10 2.4E-15 98.8 21.8 197 191-422 28-228 (234)
67 PRK12370 invasion protein regu 99.4 6.2E-11 1.3E-15 112.4 22.0 244 208-460 275-537 (553)
68 KOG1156 N-terminal acetyltrans 99.4 1.8E-08 3.9E-13 90.6 35.5 444 7-457 19-510 (700)
69 KOG1129 TPR repeat-containing 99.4 3.1E-11 6.8E-16 98.8 16.7 232 192-428 221-461 (478)
70 KOG4318 Bicoid mRNA stability 99.4 1.6E-09 3.6E-14 100.4 29.0 262 23-310 22-286 (1088)
71 KOG1840 Kinesin light chain [C 99.4 1.1E-09 2.3E-14 99.3 26.1 239 191-457 196-478 (508)
72 PF12569 NARP1: NMDA receptor- 99.4 2.3E-08 5E-13 91.9 35.2 250 3-255 12-292 (517)
73 PRK11189 lipoprotein NlpI; Pro 99.4 5.6E-10 1.2E-14 96.9 23.2 219 240-466 41-273 (296)
74 KOG2376 Signal recognition par 99.4 3.3E-08 7.1E-13 88.0 33.8 125 2-128 19-146 (652)
75 PF12569 NARP1: NMDA receptor- 99.3 1.2E-08 2.6E-13 93.7 32.3 172 177-354 129-333 (517)
76 KOG3616 Selective LIM binding 99.3 1.1E-08 2.5E-13 93.2 30.9 365 2-423 564-934 (1636)
77 KOG0548 Molecular co-chaperone 99.3 4.7E-09 1E-13 92.2 27.3 431 4-473 11-470 (539)
78 PF13041 PPR_2: PPR repeat fam 99.3 5.1E-12 1.1E-16 76.5 6.6 50 324-373 1-50 (50)
79 KOG1174 Anaphase-promoting com 99.3 3.9E-08 8.5E-13 83.7 31.6 288 133-428 206-503 (564)
80 KOG1840 Kinesin light chain [C 99.3 1E-09 2.2E-14 99.4 23.3 215 261-475 200-462 (508)
81 KOG4318 Bicoid mRNA stability 99.3 1.6E-10 3.5E-15 106.9 17.6 253 145-412 12-286 (1088)
82 KOG0624 dsRNA-activated protei 99.3 6.2E-09 1.3E-13 86.2 24.7 312 95-469 41-381 (504)
83 KOG1156 N-terminal acetyltrans 99.3 4.5E-07 9.7E-12 81.9 38.1 421 29-460 11-470 (700)
84 PF04733 Coatomer_E: Coatomer 99.3 6E-10 1.3E-14 95.1 19.3 253 201-465 8-272 (290)
85 KOG4340 Uncharacterized conser 99.3 4.4E-08 9.6E-13 79.7 28.1 186 2-191 17-210 (459)
86 PF13041 PPR_2: PPR repeat fam 99.3 1.9E-11 4.1E-16 74.0 6.0 50 24-73 1-50 (50)
87 KOG3617 WD40 and TPR repeat-co 99.2 1.2E-07 2.5E-12 87.8 32.2 249 3-287 736-994 (1416)
88 KOG3616 Selective LIM binding 99.2 2.9E-07 6.2E-12 84.4 34.0 191 232-452 739-931 (1636)
89 KOG0985 Vesicle coat protein c 99.2 6.4E-07 1.4E-11 84.9 36.7 401 36-475 848-1325(1666)
90 COG3063 PilF Tfp pilus assembl 99.2 7.4E-09 1.6E-13 81.1 20.4 192 270-464 45-242 (250)
91 KOG0624 dsRNA-activated protei 99.2 5.2E-07 1.1E-11 75.1 31.2 304 59-389 36-369 (504)
92 KOG1127 TPR repeat-containing 99.2 9.9E-08 2.1E-12 90.1 30.2 173 10-186 473-657 (1238)
93 COG3063 PilF Tfp pilus assembl 99.2 8.9E-09 1.9E-13 80.6 19.8 188 230-422 40-232 (250)
94 PRK11189 lipoprotein NlpI; Pro 99.2 4.5E-08 9.8E-13 85.1 26.0 115 138-253 41-160 (296)
95 KOG3617 WD40 and TPR repeat-co 99.2 4.1E-06 8.9E-11 78.0 37.4 162 34-220 808-993 (1416)
96 PRK04841 transcriptional regul 99.1 1.8E-06 4E-11 88.4 38.6 363 98-463 347-765 (903)
97 cd05804 StaR_like StaR_like; a 99.1 5.4E-07 1.2E-11 81.5 30.9 193 265-459 119-337 (355)
98 PRK15359 type III secretion sy 99.1 3.8E-09 8.2E-14 80.6 13.7 123 346-474 13-137 (144)
99 KOG4340 Uncharacterized conser 99.1 3.4E-07 7.4E-12 74.7 24.3 285 61-385 10-334 (459)
100 PF04733 Coatomer_E: Coatomer 99.1 6.4E-09 1.4E-13 88.9 15.0 227 195-430 36-270 (290)
101 cd05804 StaR_like StaR_like; a 99.1 8.4E-07 1.8E-11 80.3 29.2 252 170-423 54-333 (355)
102 KOG1125 TPR repeat-containing 99.0 5.9E-09 1.3E-13 92.4 13.8 226 232-461 292-530 (579)
103 KOG0985 Vesicle coat protein c 99.0 2.4E-05 5.2E-10 74.8 37.4 440 3-455 614-1246(1666)
104 KOG1125 TPR repeat-containing 99.0 6.4E-09 1.4E-13 92.2 13.2 202 270-474 295-509 (579)
105 PRK10370 formate-dependent nit 99.0 1.1E-07 2.4E-12 76.8 17.6 156 303-469 24-184 (198)
106 KOG1127 TPR repeat-containing 99.0 9E-07 1.9E-11 83.9 25.4 176 77-253 474-658 (1238)
107 PRK04841 transcriptional regul 99.0 1.2E-05 2.6E-10 82.6 36.4 324 100-423 382-757 (903)
108 KOG0548 Molecular co-chaperone 98.9 1.9E-06 4.1E-11 76.3 24.5 353 99-473 9-436 (539)
109 TIGR03302 OM_YfiO outer membra 98.9 2E-07 4.2E-12 78.8 17.0 60 402-461 171-235 (235)
110 PLN02789 farnesyltranstransfer 98.9 5E-07 1.1E-11 78.4 19.6 130 343-475 125-267 (320)
111 KOG3081 Vesicle coat complex C 98.9 3.4E-06 7.3E-11 68.0 22.4 252 202-464 16-277 (299)
112 KOG3060 Uncharacterized conser 98.7 2.2E-06 4.7E-11 68.5 17.3 166 300-468 57-230 (289)
113 PLN02789 farnesyltranstransfer 98.7 1.5E-05 3.1E-10 69.5 23.8 187 276-466 88-310 (320)
114 TIGR02552 LcrH_SycD type III s 98.7 5.3E-07 1.1E-11 68.6 13.3 115 348-466 5-122 (135)
115 PRK14720 transcript cleavage f 98.7 3.7E-06 8.1E-11 81.6 21.4 216 223-475 29-269 (906)
116 KOG1128 Uncharacterized conser 98.7 7.7E-06 1.7E-10 75.3 21.9 216 190-423 394-613 (777)
117 PRK15179 Vi polysaccharide bio 98.7 3.5E-06 7.6E-11 80.9 20.6 140 325-468 85-227 (694)
118 TIGR03302 OM_YfiO outer membra 98.7 6.3E-06 1.4E-10 69.6 20.3 97 193-289 32-144 (235)
119 KOG1128 Uncharacterized conser 98.7 4.5E-06 9.7E-11 76.8 20.1 233 157-407 396-633 (777)
120 COG5010 TadD Flp pilus assembl 98.7 5.1E-06 1.1E-10 67.0 17.9 153 299-454 70-227 (257)
121 PRK15359 type III secretion sy 98.7 8.5E-07 1.8E-11 67.7 13.1 118 316-436 14-133 (144)
122 PF12854 PPR_1: PPR repeat 98.7 4.5E-08 9.7E-13 53.0 4.2 34 55-88 1-34 (34)
123 KOG1070 rRNA processing protei 98.7 3.5E-06 7.6E-11 82.8 19.5 226 226-457 1459-1699(1710)
124 PF12854 PPR_1: PPR repeat 98.6 5.6E-08 1.2E-12 52.6 4.2 33 188-220 1-33 (34)
125 KOG3081 Vesicle coat complex C 98.6 2.2E-05 4.8E-10 63.4 20.2 149 266-423 114-268 (299)
126 KOG2053 Mitochondrial inherita 98.6 0.00052 1.1E-08 65.3 41.0 216 5-223 19-255 (932)
127 KOG1070 rRNA processing protei 98.6 3.2E-05 6.9E-10 76.5 24.9 222 158-380 1457-1690(1710)
128 PRK10370 formate-dependent nit 98.6 4.5E-06 9.8E-11 67.5 16.2 114 274-389 53-172 (198)
129 COG5010 TadD Flp pilus assembl 98.6 2E-05 4.2E-10 63.7 18.7 156 264-423 70-228 (257)
130 KOG0553 TPR repeat-containing 98.6 7.4E-07 1.6E-11 73.2 10.6 101 370-472 90-192 (304)
131 PF09976 TPR_21: Tetratricopep 98.6 6.1E-06 1.3E-10 63.4 15.3 127 328-456 14-145 (145)
132 PRK14720 transcript cleavage f 98.5 3.5E-05 7.7E-10 75.1 22.5 282 122-467 30-315 (906)
133 COG4783 Putative Zn-dependent 98.5 3.2E-05 6.9E-10 68.2 19.9 138 303-459 314-455 (484)
134 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.8E-06 6E-11 63.1 11.6 106 363-468 4-115 (119)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.5E-06 9.8E-11 74.0 14.3 124 298-424 172-295 (395)
136 PRK15179 Vi polysaccharide bio 98.5 2.5E-05 5.4E-10 75.2 19.5 132 257-390 83-217 (694)
137 PF07079 DUF1347: Protein of u 98.4 0.0014 3E-08 57.6 34.7 415 5-433 16-529 (549)
138 KOG1914 mRNA cleavage and poly 98.4 0.0017 3.6E-08 58.4 36.7 182 276-460 309-503 (656)
139 PLN03088 SGT1, suppressor of 98.4 8.3E-06 1.8E-10 72.7 12.8 101 370-472 11-113 (356)
140 KOG3060 Uncharacterized conser 98.4 4.8E-05 1E-09 61.1 15.2 142 328-473 54-198 (289)
141 COG4783 Putative Zn-dependent 98.3 0.00011 2.5E-09 64.8 18.8 136 328-467 308-446 (484)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.2E-05 4.8E-10 69.7 14.8 126 195-322 170-295 (395)
143 PF13432 TPR_16: Tetratricopep 98.3 2E-06 4.3E-11 55.5 6.2 62 402-463 2-65 (65)
144 TIGR02552 LcrH_SycD type III s 98.3 1.9E-05 4.1E-10 60.0 12.0 102 327-431 18-120 (135)
145 PF12895 Apc3: Anaphase-promot 98.3 3E-06 6.5E-11 58.0 6.4 80 339-421 2-82 (84)
146 PRK15363 pathogenicity island 98.3 2E-05 4.3E-10 59.2 10.8 96 362-459 36-133 (157)
147 PF09976 TPR_21: Tetratricopep 98.3 2.5E-05 5.3E-10 60.0 11.7 112 308-422 24-143 (145)
148 PF14938 SNAP: Soluble NSF att 98.2 0.0011 2.5E-08 57.3 22.7 138 196-333 116-275 (282)
149 PRK02603 photosystem I assembl 98.2 4.1E-05 8.8E-10 60.8 12.7 117 326-462 35-153 (172)
150 PRK10153 DNA-binding transcrip 98.2 6.2E-05 1.3E-09 70.2 15.6 140 323-464 334-488 (517)
151 KOG1914 mRNA cleavage and poly 98.2 0.0038 8.3E-08 56.2 35.6 180 241-421 347-534 (656)
152 KOG2280 Vacuolar assembly/sort 98.2 0.0054 1.2E-07 57.5 27.8 355 37-422 400-795 (829)
153 cd00189 TPR Tetratricopeptide 98.2 2E-05 4.3E-10 55.6 9.8 93 366-460 5-99 (100)
154 TIGR00756 PPR pentatricopeptid 98.2 3.4E-06 7.3E-11 46.5 4.4 34 327-360 1-34 (35)
155 PF12895 Apc3: Anaphase-promot 98.1 8.4E-06 1.8E-10 55.8 6.3 82 374-455 2-84 (84)
156 PF14938 SNAP: Soluble NSF att 98.1 0.00033 7.3E-09 60.6 17.5 54 301-354 120-183 (282)
157 PF13812 PPR_3: Pentatricopept 98.1 6.3E-06 1.4E-10 45.0 4.3 33 327-359 2-34 (34)
158 PF05843 Suf: Suppressor of fo 98.1 0.0002 4.3E-09 61.7 15.7 136 327-465 2-143 (280)
159 KOG0550 Molecular chaperone (D 98.1 0.00055 1.2E-08 59.2 17.6 150 270-423 179-347 (486)
160 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 45.2 4.3 33 227-259 2-34 (35)
161 PF13414 TPR_11: TPR repeat; P 98.1 1.1E-05 2.3E-10 52.8 5.7 65 396-460 2-69 (69)
162 PF13428 TPR_14: Tetratricopep 98.0 1.2E-05 2.5E-10 46.8 4.6 43 430-472 2-44 (44)
163 PF13812 PPR_3: Pentatricopept 98.0 9.8E-06 2.1E-10 44.2 4.1 33 27-59 2-34 (34)
164 PF14559 TPR_19: Tetratricopep 98.0 6.2E-06 1.3E-10 53.8 3.8 49 373-423 3-51 (68)
165 PF13281 DUF4071: Domain of un 98.0 0.0017 3.8E-08 57.0 19.5 170 297-469 143-345 (374)
166 KOG2041 WD40 repeat protein [G 98.0 0.014 3.1E-07 54.4 28.5 30 23-52 689-718 (1189)
167 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0003 6.4E-09 52.0 12.5 96 328-423 4-102 (119)
168 CHL00033 ycf3 photosystem I as 98.0 0.00016 3.5E-09 57.2 11.3 18 445-462 136-153 (168)
169 cd00189 TPR Tetratricopeptide 97.9 0.00014 3.1E-09 51.1 10.1 92 329-423 3-94 (100)
170 KOG0550 Molecular chaperone (D 97.9 0.0063 1.4E-07 53.0 20.8 248 4-255 58-351 (486)
171 PF13371 TPR_9: Tetratricopept 97.9 3.7E-05 8E-10 51.0 6.3 67 404-470 2-70 (73)
172 PRK15363 pathogenicity island 97.9 0.00067 1.4E-08 51.2 13.2 97 324-423 33-129 (157)
173 PRK10803 tol-pal system protei 97.9 0.00025 5.4E-09 59.9 12.1 102 364-465 146-253 (263)
174 PF04840 Vps16_C: Vps16, C-ter 97.9 0.015 3.3E-07 50.8 28.4 79 201-285 184-262 (319)
175 COG4235 Cytochrome c biogenesi 97.9 0.0011 2.5E-08 55.3 14.8 114 348-464 144-262 (287)
176 PF04840 Vps16_C: Vps16, C-ter 97.9 0.016 3.5E-07 50.6 28.7 111 297-424 179-289 (319)
177 PF01535 PPR: PPR repeat; Int 97.8 3.3E-05 7.2E-10 41.0 3.5 30 328-357 2-31 (31)
178 PLN03088 SGT1, suppressor of 97.8 0.00049 1.1E-08 61.6 12.5 93 333-428 9-102 (356)
179 PRK02603 photosystem I assembl 97.8 0.00086 1.9E-08 53.2 12.7 86 295-381 35-126 (172)
180 KOG2053 Mitochondrial inherita 97.8 0.044 9.5E-07 52.9 39.2 182 5-190 53-257 (932)
181 PF12688 TPR_5: Tetratrico pep 97.8 0.0013 2.7E-08 47.9 12.0 91 332-422 7-100 (120)
182 PRK10866 outer membrane biogen 97.7 0.0022 4.7E-08 53.8 15.2 65 24-89 30-97 (243)
183 COG4700 Uncharacterized protei 97.7 0.0026 5.7E-08 48.8 13.8 129 291-422 85-218 (251)
184 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.027 5.9E-07 49.9 33.4 132 327-462 398-535 (660)
185 CHL00033 ycf3 photosystem I as 97.7 0.00063 1.4E-08 53.8 11.4 95 326-422 35-138 (168)
186 PF10037 MRP-S27: Mitochondria 97.7 0.00092 2E-08 60.0 13.3 119 256-374 62-186 (429)
187 PF10037 MRP-S27: Mitochondria 97.7 0.00065 1.4E-08 61.0 12.2 120 189-308 61-186 (429)
188 KOG2796 Uncharacterized conser 97.7 0.0034 7.4E-08 51.1 14.5 135 328-462 179-319 (366)
189 PRK10153 DNA-binding transcrip 97.7 0.0028 6.1E-08 59.5 16.3 35 256-290 333-372 (517)
190 PF14559 TPR_19: Tetratricopep 97.7 0.00021 4.5E-09 46.5 6.5 64 408-471 2-67 (68)
191 PF01535 PPR: PPR repeat; Int 97.7 6.3E-05 1.4E-09 39.9 3.3 29 227-255 2-30 (31)
192 COG3898 Uncharacterized membra 97.7 0.032 7E-07 48.4 23.2 278 171-457 96-391 (531)
193 PRK10866 outer membrane biogen 97.6 0.0051 1.1E-07 51.6 15.8 55 200-254 38-98 (243)
194 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.6E-08 46.1 9.8 79 127-206 29-116 (120)
195 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.8E-08 46.0 9.8 79 229-307 29-116 (120)
196 KOG0553 TPR repeat-containing 97.6 0.00095 2.1E-08 55.5 10.5 95 303-402 89-187 (304)
197 PF05843 Suf: Suppressor of fo 97.6 0.003 6.4E-08 54.5 14.0 124 27-151 2-135 (280)
198 COG4700 Uncharacterized protei 97.6 0.023 5E-07 43.9 16.3 130 257-388 86-220 (251)
199 KOG1538 Uncharacterized conser 97.5 0.032 7E-07 51.7 20.1 67 311-386 732-798 (1081)
200 PF13424 TPR_12: Tetratricopep 97.5 0.00022 4.9E-09 47.9 4.8 60 399-458 7-75 (78)
201 KOG1130 Predicted G-alpha GTPa 97.5 0.0022 4.9E-08 55.6 11.6 130 328-457 197-343 (639)
202 KOG1130 Predicted G-alpha GTPa 97.5 0.0027 5.8E-08 55.2 12.0 269 34-319 25-339 (639)
203 PF13414 TPR_11: TPR repeat; P 97.5 0.0011 2.3E-08 43.3 7.7 64 325-389 2-66 (69)
204 KOG1538 Uncharacterized conser 97.5 0.021 4.5E-07 52.9 17.7 88 260-356 747-847 (1081)
205 PF13432 TPR_16: Tetratricopep 97.4 0.00072 1.6E-08 43.4 6.6 57 333-390 4-60 (65)
206 PF12688 TPR_5: Tetratrico pep 97.4 0.0041 8.8E-08 45.3 10.9 58 232-289 8-67 (120)
207 PRK10803 tol-pal system protei 97.4 0.0022 4.8E-08 54.2 11.0 101 328-430 145-251 (263)
208 COG1729 Uncharacterized protei 97.4 0.0023 4.9E-08 52.9 10.3 97 371-467 151-253 (262)
209 KOG2041 WD40 repeat protein [G 97.4 0.12 2.6E-06 48.6 25.5 361 77-471 679-1102(1189)
210 KOG2796 Uncharacterized conser 97.3 0.011 2.4E-07 48.3 13.1 131 226-356 178-316 (366)
211 PF13512 TPR_18: Tetratricopep 97.3 0.01 2.2E-07 44.1 11.6 117 333-465 17-135 (142)
212 KOG0543 FKBP-type peptidyl-pro 97.3 0.0043 9.3E-08 54.1 10.9 71 400-470 260-332 (397)
213 PF13525 YfiO: Outer membrane 97.2 0.02 4.4E-07 46.8 14.1 51 5-55 15-71 (203)
214 KOG1258 mRNA processing protei 97.2 0.18 4E-06 46.7 28.9 178 294-473 296-485 (577)
215 COG3898 Uncharacterized membra 97.2 0.14 3E-06 44.8 27.3 130 29-159 85-224 (531)
216 KOG2280 Vacuolar assembly/sort 97.2 0.23 5E-06 47.3 29.2 321 31-384 442-793 (829)
217 PF13525 YfiO: Outer membrane 97.2 0.038 8.3E-07 45.2 15.4 55 200-254 11-71 (203)
218 PF00515 TPR_1: Tetratricopept 97.1 0.001 2.2E-08 36.0 4.1 33 430-462 2-34 (34)
219 KOG2114 Vacuolar assembly/sort 97.1 0.18 4E-06 48.6 20.8 53 300-352 710-762 (933)
220 PF06239 ECSIT: Evolutionarily 97.1 0.0078 1.7E-07 47.9 10.3 89 222-310 44-153 (228)
221 PF07719 TPR_2: Tetratricopept 97.1 0.0015 3.2E-08 35.3 4.7 33 430-462 2-34 (34)
222 COG4235 Cytochrome c biogenesi 97.1 0.025 5.3E-07 47.6 13.0 97 292-389 153-255 (287)
223 PF04053 Coatomer_WDAD: Coatom 97.0 0.04 8.7E-07 50.6 15.2 159 34-220 269-428 (443)
224 PF03704 BTAD: Bacterial trans 97.0 0.039 8.4E-07 42.4 13.3 71 227-298 64-139 (146)
225 PF13371 TPR_9: Tetratricopept 97.0 0.0041 8.8E-08 41.0 6.8 56 334-390 3-58 (73)
226 PRK15331 chaperone protein Sic 97.0 0.026 5.6E-07 43.1 11.2 91 335-428 46-136 (165)
227 PF12921 ATP13: Mitochondrial 96.9 0.015 3.2E-07 42.9 9.6 52 357-408 48-99 (126)
228 PRK15331 chaperone protein Sic 96.9 0.013 2.8E-07 44.6 9.1 94 367-463 43-138 (165)
229 KOG4555 TPR repeat-containing 96.9 0.014 3E-07 42.1 8.4 89 371-461 53-147 (175)
230 KOG2114 Vacuolar assembly/sort 96.8 0.57 1.2E-05 45.4 27.8 55 402-457 710-764 (933)
231 COG0457 NrfG FOG: TPR repeat [ 96.8 0.26 5.6E-06 41.4 23.0 162 298-461 98-268 (291)
232 PF13512 TPR_18: Tetratricopep 96.8 0.016 3.4E-07 43.1 8.6 54 369-422 18-72 (142)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0051 1.1E-07 55.0 7.2 96 359-459 73-175 (453)
234 PF13424 TPR_12: Tetratricopep 96.8 0.0039 8.5E-08 41.7 5.2 63 327-389 6-74 (78)
235 PF13431 TPR_17: Tetratricopep 96.8 0.0015 3.1E-08 35.2 2.5 25 451-475 1-25 (34)
236 PF04184 ST7: ST7 protein; In 96.8 0.25 5.4E-06 44.9 17.3 98 367-464 265-381 (539)
237 COG1729 Uncharacterized protei 96.7 0.017 3.7E-07 47.9 9.5 102 328-430 144-249 (262)
238 PF06239 ECSIT: Evolutionarily 96.7 0.024 5.3E-07 45.2 9.8 89 323-412 44-153 (228)
239 KOG1920 IkappaB kinase complex 96.7 0.85 1.8E-05 46.2 26.2 80 333-424 972-1053(1265)
240 PF07079 DUF1347: Protein of u 96.7 0.46 1E-05 42.6 30.0 69 327-403 461-531 (549)
241 PF13281 DUF4071: Domain of un 96.6 0.45 9.7E-06 42.4 19.9 75 196-270 143-227 (374)
242 PF02259 FAT: FAT domain; Int 96.6 0.49 1.1E-05 42.8 21.2 149 324-474 144-303 (352)
243 PF03704 BTAD: Bacterial trans 96.6 0.029 6.2E-07 43.1 9.9 72 328-400 64-139 (146)
244 KOG1585 Protein required for f 96.5 0.16 3.5E-06 41.3 13.1 25 263-287 34-58 (308)
245 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.19 4E-06 45.4 14.7 63 325-389 74-140 (453)
246 PF10300 DUF3808: Protein of u 96.5 0.26 5.6E-06 46.2 16.5 114 273-389 246-375 (468)
247 COG2976 Uncharacterized protei 96.4 0.2 4.3E-06 39.4 12.9 130 328-462 56-192 (207)
248 smart00299 CLH Clathrin heavy 96.3 0.32 6.8E-06 37.0 14.5 127 328-474 9-136 (140)
249 PF13181 TPR_8: Tetratricopept 96.3 0.0081 1.8E-07 32.3 3.7 32 431-462 3-34 (34)
250 KOG0543 FKBP-type peptidyl-pro 96.3 0.037 8.1E-07 48.5 9.1 86 303-389 216-319 (397)
251 KOG1464 COP9 signalosome, subu 96.2 0.62 1.3E-05 38.7 19.6 241 208-454 41-328 (440)
252 KOG1941 Acetylcholine receptor 96.2 0.18 3.8E-06 43.7 12.3 149 205-353 17-189 (518)
253 PF04053 Coatomer_WDAD: Coatom 96.2 0.24 5.2E-06 45.7 14.3 155 4-184 270-427 (443)
254 COG4105 ComL DNA uptake lipopr 96.1 0.66 1.4E-05 38.5 16.6 62 28-89 36-99 (254)
255 KOG4648 Uncharacterized conser 96.1 0.024 5.3E-07 48.2 6.9 100 369-470 105-206 (536)
256 PF10300 DUF3808: Protein of u 96.1 1.3 2.8E-05 41.6 22.3 157 128-287 193-374 (468)
257 PRK11906 transcriptional regul 96.1 0.17 3.7E-06 45.8 12.4 110 343-456 321-434 (458)
258 PF13176 TPR_7: Tetratricopept 96.0 0.014 3E-07 32.0 3.6 29 431-459 1-29 (36)
259 KOG4555 TPR repeat-containing 96.0 0.091 2E-06 38.0 8.3 83 5-87 53-141 (175)
260 COG3118 Thioredoxin domain-con 95.9 0.89 1.9E-05 38.5 16.9 139 33-172 141-285 (304)
261 smart00299 CLH Clathrin heavy 95.9 0.52 1.1E-05 35.8 13.2 126 29-170 10-136 (140)
262 PF12921 ATP13: Mitochondrial 95.8 0.15 3.1E-06 37.7 9.4 108 326-454 2-115 (126)
263 KOG1941 Acetylcholine receptor 95.8 0.4 8.7E-06 41.6 12.7 220 169-388 16-273 (518)
264 COG0457 NrfG FOG: TPR repeat [ 95.7 1 2.2E-05 37.7 23.3 197 275-473 38-246 (291)
265 KOG1586 Protein required for f 95.6 0.76 1.6E-05 37.4 13.1 20 441-460 166-185 (288)
266 PF07035 Mic1: Colon cancer-as 95.6 0.76 1.6E-05 35.7 12.7 132 46-186 14-147 (167)
267 COG1747 Uncharacterized N-term 95.5 1.9 4.1E-05 39.6 19.1 58 259-319 65-122 (711)
268 KOG4234 TPR repeat-containing 95.5 0.19 4.1E-06 39.6 9.2 95 371-467 105-206 (271)
269 PF09205 DUF1955: Domain of un 95.5 0.64 1.4E-05 34.0 14.4 139 236-393 13-151 (161)
270 PF14853 Fis1_TPR_C: Fis1 C-te 95.3 0.089 1.9E-06 31.6 5.4 37 433-469 5-41 (53)
271 COG4649 Uncharacterized protei 95.2 0.76 1.7E-05 35.4 11.2 119 103-222 69-195 (221)
272 COG5107 RNA14 Pre-mRNA 3'-end 95.2 2.3 5E-05 38.4 30.3 125 296-423 398-528 (660)
273 PF04184 ST7: ST7 protein; In 95.1 1.5 3.2E-05 40.2 14.6 60 295-354 259-323 (539)
274 PF13174 TPR_6: Tetratricopept 95.0 0.056 1.2E-06 28.6 3.8 31 432-462 3-33 (33)
275 PRK11906 transcriptional regul 95.0 2 4.3E-05 39.2 15.2 107 313-422 322-432 (458)
276 KOG1258 mRNA processing protei 95.0 3.2 7E-05 39.0 31.2 181 226-411 298-489 (577)
277 PF08631 SPO22: Meiosis protei 94.9 2.3 4.9E-05 36.9 22.2 20 437-456 254-273 (278)
278 KOG2066 Vacuolar assembly/sort 94.8 4.3 9.3E-05 39.5 25.6 100 68-171 363-467 (846)
279 KOG1586 Protein required for f 94.8 1.9 4.1E-05 35.2 13.2 91 375-465 128-231 (288)
280 PF13428 TPR_14: Tetratricopep 94.8 0.095 2.1E-06 30.2 4.5 39 27-66 2-40 (44)
281 KOG4507 Uncharacterized conser 94.7 0.097 2.1E-06 48.2 6.5 101 371-472 617-719 (886)
282 PF10602 RPN7: 26S proteasome 94.7 1.2 2.6E-05 35.4 12.0 96 328-423 38-139 (177)
283 COG4649 Uncharacterized protei 94.7 1.6 3.4E-05 33.8 15.0 119 336-457 68-195 (221)
284 PF09613 HrpB1_HrpK: Bacterial 94.6 1.6 3.4E-05 33.5 11.8 53 336-390 20-73 (160)
285 PF13374 TPR_10: Tetratricopep 94.5 0.1 2.3E-06 29.4 4.4 28 430-457 3-30 (42)
286 PF09205 DUF1955: Domain of un 94.5 1.4 2.9E-05 32.4 12.0 64 228-292 89-152 (161)
287 KOG2066 Vacuolar assembly/sort 94.5 5.2 0.00011 39.0 26.4 145 2-151 363-533 (846)
288 KOG3941 Intermediate in Toll s 94.2 0.58 1.3E-05 39.1 9.2 107 215-321 55-185 (406)
289 COG3118 Thioredoxin domain-con 94.0 3.5 7.6E-05 35.1 17.9 52 270-322 144-195 (304)
290 PF13176 TPR_7: Tetratricopept 93.9 0.15 3.4E-06 27.7 3.9 23 329-351 2-24 (36)
291 PF00637 Clathrin: Region in C 93.7 0.11 2.3E-06 39.8 4.3 84 32-118 13-96 (143)
292 PRK09687 putative lyase; Provi 93.7 4.3 9.3E-05 35.1 24.8 222 17-253 28-262 (280)
293 smart00028 TPR Tetratricopepti 93.6 0.14 2.9E-06 26.5 3.5 32 431-462 3-34 (34)
294 PRK12798 chemotaxis protein; R 93.5 5.5 0.00012 35.9 18.9 164 308-474 125-301 (421)
295 KOG3364 Membrane protein invol 93.5 0.97 2.1E-05 33.2 8.2 74 394-467 29-109 (149)
296 KOG2610 Uncharacterized conser 93.4 4.9 0.00011 34.9 14.2 148 36-184 113-272 (491)
297 PF13431 TPR_17: Tetratricopep 93.4 0.094 2E-06 28.1 2.4 24 394-417 10-33 (34)
298 KOG3941 Intermediate in Toll s 93.3 1.3 2.9E-05 37.1 9.9 97 315-412 54-173 (406)
299 KOG1920 IkappaB kinase complex 93.3 11 0.00024 38.8 20.2 117 300-427 913-1029(1265)
300 PF09613 HrpB1_HrpK: Bacterial 93.3 2.1 4.6E-05 32.8 10.2 62 26-89 7-72 (160)
301 PRK11619 lytic murein transgly 93.2 9.2 0.0002 37.7 37.2 144 311-455 295-465 (644)
302 PRK11619 lytic murein transgly 93.1 9.8 0.00021 37.5 31.6 114 339-455 254-372 (644)
303 COG3629 DnrI DNA-binding trans 93.1 1.3 2.8E-05 37.7 9.8 78 328-406 155-236 (280)
304 PF08631 SPO22: Meiosis protei 93.0 5.6 0.00012 34.5 22.2 115 6-120 4-149 (278)
305 KOG4570 Uncharacterized conser 93.0 1.1 2.5E-05 38.1 9.1 100 290-390 59-164 (418)
306 PF06552 TOM20_plant: Plant sp 92.7 0.42 9E-06 37.2 5.9 45 425-469 64-120 (186)
307 PF00515 TPR_1: Tetratricopept 92.7 0.28 6.1E-06 26.1 3.8 27 328-354 3-29 (34)
308 KOG0890 Protein kinase of the 92.6 21 0.00044 40.1 29.0 367 67-473 1389-1799(2382)
309 COG4105 ComL DNA uptake lipopr 92.4 5.8 0.00013 33.1 22.0 55 235-289 44-100 (254)
310 PRK09687 putative lyase; Provi 92.3 6.9 0.00015 33.9 25.0 125 324-460 140-265 (280)
311 PF13170 DUF4003: Protein of u 92.2 2.5 5.5E-05 36.8 10.8 127 176-304 79-226 (297)
312 KOG4279 Serine/threonine prote 92.2 8 0.00017 37.6 14.4 193 227-472 203-409 (1226)
313 KOG0276 Vesicle coat complex C 92.1 2.5 5.5E-05 39.6 10.9 132 63-220 616-747 (794)
314 PF10345 Cohesin_load: Cohesin 92.0 13 0.00029 36.6 27.1 50 372-421 372-428 (608)
315 PF04097 Nic96: Nup93/Nic96; 91.9 14 0.0003 36.4 23.9 21 407-427 515-535 (613)
316 KOG2610 Uncharacterized conser 91.8 8.2 0.00018 33.6 16.0 45 306-350 186-233 (491)
317 PF00637 Clathrin: Region in C 91.5 0.27 5.8E-06 37.6 3.8 125 1-139 13-141 (143)
318 PF07719 TPR_2: Tetratricopept 91.3 0.49 1.1E-05 25.0 3.8 26 329-354 4-29 (34)
319 COG3629 DnrI DNA-binding trans 91.2 2.7 5.8E-05 35.9 9.5 60 194-253 153-215 (280)
320 PF10602 RPN7: 26S proteasome 90.9 1.7 3.6E-05 34.6 7.8 95 362-457 37-141 (177)
321 PF02259 FAT: FAT domain; Int 90.2 14 0.0003 33.4 21.2 62 192-253 144-212 (352)
322 PF11207 DUF2989: Protein of u 90.0 3.5 7.6E-05 33.0 8.6 73 343-416 123-197 (203)
323 PF02284 COX5A: Cytochrome c o 89.9 2.8 6.1E-05 29.1 6.9 60 344-405 28-87 (108)
324 COG4785 NlpI Lipoprotein NlpI, 89.8 9.5 0.00021 31.0 16.8 160 293-460 97-268 (297)
325 PF06552 TOM20_plant: Plant sp 89.8 0.62 1.4E-05 36.3 4.3 31 445-475 51-81 (186)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 3.4 7.4E-05 28.4 7.1 60 343-404 24-83 (103)
327 PF07035 Mic1: Colon cancer-as 89.6 8.4 0.00018 30.1 15.1 122 23-150 26-147 (167)
328 TIGR02561 HrpB1_HrpK type III 89.1 8.1 0.00018 29.3 10.1 26 432-457 96-121 (153)
329 KOG4234 TPR repeat-containing 88.9 1.1 2.4E-05 35.5 5.1 71 404-474 102-179 (271)
330 PF09670 Cas_Cas02710: CRISPR- 88.7 13 0.00027 34.0 12.5 122 334-457 139-269 (379)
331 PF07721 TPR_4: Tetratricopept 88.6 0.85 1.8E-05 22.5 3.0 18 403-420 7-24 (26)
332 COG4785 NlpI Lipoprotein NlpI, 88.5 12 0.00026 30.5 15.3 27 363-389 239-265 (297)
333 KOG4570 Uncharacterized conser 88.4 7 0.00015 33.7 9.6 99 188-290 58-165 (418)
334 COG2909 MalT ATP-dependent tra 88.2 30 0.00066 34.7 23.4 191 270-460 425-649 (894)
335 KOG0276 Vesicle coat complex C 87.7 8.4 0.00018 36.4 10.5 103 204-323 647-749 (794)
336 KOG1585 Protein required for f 87.7 15 0.00032 30.6 17.8 22 129-150 37-58 (308)
337 KOG1550 Extracellular protein 87.7 29 0.00062 33.8 18.6 80 376-460 454-540 (552)
338 smart00386 HAT HAT (Half-A-TPR 87.3 1.5 3.2E-05 22.7 3.8 30 443-472 1-30 (33)
339 PF13374 TPR_10: Tetratricopep 87.3 1.6 3.4E-05 24.4 4.1 26 328-353 4-29 (42)
340 PRK15180 Vi polysaccharide bio 87.2 4.1 8.8E-05 37.2 8.1 124 335-462 298-424 (831)
341 PF11207 DUF2989: Protein of u 87.2 3.9 8.4E-05 32.8 7.2 71 71-143 117-198 (203)
342 KOG4648 Uncharacterized conser 87.1 2.8 6E-05 36.4 6.7 87 301-388 103-192 (536)
343 KOG2471 TPR repeat-containing 86.7 27 0.00058 32.4 15.9 103 303-408 248-380 (696)
344 PF13174 TPR_6: Tetratricopept 86.3 2 4.2E-05 22.4 3.9 24 367-390 6-29 (33)
345 PRK10941 hypothetical protein; 86.3 5.9 0.00013 33.9 8.4 64 403-466 187-252 (269)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 4.8 0.0001 27.7 6.1 45 44-88 25-69 (103)
347 PF13181 TPR_8: Tetratricopept 85.9 2.3 5E-05 22.4 4.0 27 328-354 3-29 (34)
348 PF04190 DUF410: Protein of un 85.6 22 0.00048 30.4 17.1 81 294-390 89-170 (260)
349 PF02284 COX5A: Cytochrome c o 85.3 4.7 0.0001 28.1 5.9 45 44-88 28-72 (108)
350 KOG1464 COP9 signalosome, subu 85.0 22 0.00048 30.0 15.2 51 237-287 39-92 (440)
351 COG4455 ImpE Protein of avirul 84.9 6.7 0.00014 31.9 7.4 58 30-88 5-62 (273)
352 COG2976 Uncharacterized protei 84.6 19 0.00041 28.8 15.6 87 270-356 99-189 (207)
353 PF07163 Pex26: Pex26 protein; 84.5 11 0.00024 31.9 8.8 86 31-116 88-182 (309)
354 KOG0890 Protein kinase of the 84.2 83 0.0018 35.9 31.2 63 397-459 1670-1732(2382)
355 TIGR02508 type_III_yscG type I 84.0 12 0.00026 26.1 9.2 86 175-264 21-106 (115)
356 KOG1550 Extracellular protein 83.6 45 0.00098 32.4 24.4 257 175-473 228-516 (552)
357 TIGR03504 FimV_Cterm FimV C-te 83.5 3.5 7.6E-05 23.7 4.1 25 332-356 5-29 (44)
358 PF07720 TPR_3: Tetratricopept 83.3 5.5 0.00012 21.7 4.7 31 432-462 4-36 (36)
359 PF13170 DUF4003: Protein of u 82.9 32 0.00069 30.1 16.4 48 242-289 79-132 (297)
360 COG1747 Uncharacterized N-term 82.9 42 0.00091 31.5 20.4 93 224-321 65-157 (711)
361 cd08819 CARD_MDA5_2 Caspase ac 82.6 8.6 0.00019 26.0 6.1 32 106-138 50-81 (88)
362 KOG2396 HAT (Half-A-TPR) repea 82.2 44 0.00095 31.2 34.6 103 358-463 456-565 (568)
363 PF13934 ELYS: Nuclear pore co 81.0 16 0.00035 30.4 8.8 103 29-137 79-186 (226)
364 KOG0545 Aryl-hydrocarbon recep 80.8 8.6 0.00019 31.9 6.8 101 363-463 180-298 (329)
365 COG5191 Uncharacterized conser 80.3 2.4 5.3E-05 36.2 3.7 77 393-469 103-182 (435)
366 PF06957 COPI_C: Coatomer (COP 80.1 22 0.00047 32.7 9.8 46 418-463 287-334 (422)
367 TIGR03504 FimV_Cterm FimV C-te 80.0 4.1 8.9E-05 23.4 3.5 25 32-56 5-29 (44)
368 KOG3807 Predicted membrane pro 79.9 19 0.00041 31.4 8.8 20 447-466 380-399 (556)
369 PF04190 DUF410: Protein of un 79.9 38 0.00082 29.0 17.3 83 192-289 88-170 (260)
370 PRK13800 putative oxidoreducta 79.8 83 0.0018 32.9 27.2 248 191-457 632-880 (897)
371 KOG4642 Chaperone-dependent E3 79.7 34 0.00075 28.5 9.7 119 304-424 19-144 (284)
372 PRK13800 putative oxidoreducta 79.4 86 0.0019 32.8 29.0 255 112-389 624-880 (897)
373 TIGR02561 HrpB1_HrpK type III 79.3 25 0.00055 26.7 13.2 109 26-150 7-120 (153)
374 PF10579 Rapsyn_N: Rapsyn N-te 78.5 8.7 0.00019 25.3 5.0 46 338-383 18-65 (80)
375 PF13934 ELYS: Nuclear pore co 78.4 38 0.00083 28.3 11.5 122 299-428 80-203 (226)
376 PF12862 Apc5: Anaphase-promot 78.4 9.2 0.0002 26.5 5.7 28 432-459 44-71 (94)
377 KOG3824 Huntingtin interacting 77.9 3.3 7.1E-05 35.3 3.8 61 408-468 127-189 (472)
378 COG4976 Predicted methyltransf 77.6 4.3 9.3E-05 33.2 4.2 55 408-462 6-62 (287)
379 KOG0376 Serine-threonine phosp 77.6 5.5 0.00012 36.4 5.3 97 335-436 13-112 (476)
380 PF14863 Alkyl_sulf_dimr: Alky 76.9 17 0.00037 27.5 7.0 58 414-474 58-115 (141)
381 PF11846 DUF3366: Domain of un 76.6 11 0.00023 30.6 6.5 38 424-461 139-176 (193)
382 KOG2471 TPR repeat-containing 76.2 68 0.0015 30.0 15.8 39 435-473 341-379 (696)
383 PRK10941 hypothetical protein; 75.9 47 0.001 28.6 10.2 73 330-404 185-258 (269)
384 PF11846 DUF3366: Domain of un 75.6 12 0.00026 30.3 6.5 30 394-423 141-170 (193)
385 COG3947 Response regulator con 75.4 53 0.0011 28.3 12.9 56 332-388 285-340 (361)
386 PF07163 Pex26: Pex26 protein; 75.4 34 0.00073 29.3 8.8 87 232-318 90-181 (309)
387 TIGR02508 type_III_yscG type I 75.3 25 0.00054 24.6 9.0 59 303-364 47-105 (115)
388 COG2909 MalT ATP-dependent tra 74.6 1E+02 0.0022 31.3 27.2 56 331-386 623-684 (894)
389 KOG0545 Aryl-hydrocarbon recep 74.4 32 0.0007 28.7 8.3 102 326-429 178-297 (329)
390 cd08819 CARD_MDA5_2 Caspase ac 73.3 26 0.00056 23.8 6.9 66 45-112 21-86 (88)
391 KOG4642 Chaperone-dependent E3 72.5 6.4 0.00014 32.5 4.0 86 370-458 19-107 (284)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 72.2 37 0.00081 25.1 7.8 42 379-421 81-123 (126)
393 PF04910 Tcf25: Transcriptiona 71.3 81 0.0018 28.7 17.8 57 232-288 110-167 (360)
394 COG3947 Response regulator con 71.2 68 0.0015 27.7 13.6 59 228-287 282-340 (361)
395 KOG2659 LisH motif-containing 71.1 41 0.00089 27.8 8.2 94 292-385 23-127 (228)
396 PF13929 mRNA_stabil: mRNA sta 70.4 71 0.0015 27.6 14.0 158 47-219 98-263 (292)
397 PHA02537 M terminase endonucle 69.9 31 0.00067 28.7 7.5 34 429-462 169-211 (230)
398 COG4941 Predicted RNA polymera 69.6 80 0.0017 27.9 11.8 120 342-465 272-401 (415)
399 PF07064 RIC1: RIC1; InterPro 69.5 72 0.0016 27.3 15.1 151 28-186 84-247 (258)
400 TIGR02270 conserved hypothetic 68.9 99 0.0021 28.7 24.9 172 33-219 45-216 (410)
401 PF12862 Apc5: Anaphase-promot 68.9 34 0.00073 23.7 6.7 55 336-390 8-70 (94)
402 cd08326 CARD_CASP9 Caspase act 68.9 19 0.0004 24.4 5.1 34 105-138 43-76 (84)
403 KOG0991 Replication factor C, 68.7 68 0.0015 26.8 10.8 48 315-363 228-275 (333)
404 KOG4077 Cytochrome c oxidase, 68.3 34 0.00074 25.1 6.4 58 345-404 68-125 (149)
405 cd00280 TRFH Telomeric Repeat 68.2 28 0.0006 27.6 6.4 19 370-388 120-138 (200)
406 PF04097 Nic96: Nup93/Nic96; 68.1 1.3E+02 0.0029 29.8 17.3 49 122-172 110-158 (613)
407 COG5159 RPN6 26S proteasome re 67.7 80 0.0017 27.2 13.6 33 231-263 9-41 (421)
408 PF09986 DUF2225: Uncharacteri 67.7 58 0.0013 26.9 8.7 23 401-423 169-191 (214)
409 KOG0292 Vesicle coat complex C 67.3 75 0.0016 32.2 10.3 128 6-151 654-781 (1202)
410 COG4455 ImpE Protein of avirul 67.0 71 0.0015 26.3 12.4 125 329-462 4-138 (273)
411 PF10516 SHNi-TPR: SHNi-TPR; 66.2 18 0.00039 20.0 3.8 28 431-458 3-30 (38)
412 PF11768 DUF3312: Protein of u 65.3 41 0.00088 31.9 8.0 54 2-55 415-473 (545)
413 KOG2034 Vacuolar sorting prote 64.7 1.7E+02 0.0037 29.8 24.1 50 3-52 366-415 (911)
414 KOG1839 Uncharacterized protei 64.1 1.1E+02 0.0023 32.7 11.2 93 364-456 1018-1126(1236)
415 PF11848 DUF3368: Domain of un 64.0 27 0.00059 20.5 4.7 37 34-70 10-46 (48)
416 PF10366 Vps39_1: Vacuolar sor 63.7 44 0.00096 23.9 6.5 27 328-354 41-67 (108)
417 KOG0551 Hsp90 co-chaperone CNS 63.4 31 0.00068 30.2 6.4 65 404-468 88-158 (390)
418 COG0735 Fur Fe2+/Zn2+ uptake r 63.4 62 0.0013 24.7 7.6 63 348-412 8-70 (145)
419 PRK13342 recombination factor 61.8 1.4E+02 0.003 27.9 13.7 44 228-271 230-276 (413)
420 PRK14700 recombination factor 61.8 1E+02 0.0023 26.9 9.3 67 227-293 125-199 (300)
421 KOG2063 Vacuolar assembly/sort 61.8 2E+02 0.0044 29.7 25.6 39 334-372 599-637 (877)
422 PF10255 Paf67: RNA polymerase 61.6 70 0.0015 29.4 8.7 85 67-151 81-192 (404)
423 KOG4507 Uncharacterized conser 61.5 46 0.00099 31.8 7.6 84 306-390 618-705 (886)
424 COG0790 FOG: TPR repeat, SEL1 61.4 1.1E+02 0.0024 26.6 17.8 116 341-461 128-269 (292)
425 KOG1308 Hsp70-interacting prot 60.8 4.9 0.00011 35.0 1.4 84 374-459 127-212 (377)
426 PF10345 Cohesin_load: Cohesin 60.7 1.8E+02 0.0039 28.9 35.6 423 24-457 28-605 (608)
427 COG0735 Fur Fe2+/Zn2+ uptake r 60.6 74 0.0016 24.3 7.7 64 12-75 6-69 (145)
428 PF14689 SPOB_a: Sensor_kinase 60.5 19 0.0004 22.6 3.7 23 31-53 28-50 (62)
429 PF11817 Foie-gras_1: Foie gra 60.5 33 0.00072 29.1 6.4 20 368-387 185-204 (247)
430 KOG4567 GTPase-activating prot 60.5 1.2E+02 0.0025 26.6 9.4 77 46-123 263-349 (370)
431 PF14689 SPOB_a: Sensor_kinase 60.0 26 0.00057 21.9 4.3 26 364-389 26-51 (62)
432 PF09986 DUF2225: Uncharacteri 59.7 1E+02 0.0022 25.6 9.9 88 372-459 88-195 (214)
433 PF10579 Rapsyn_N: Rapsyn N-te 59.5 21 0.00044 23.7 3.7 43 409-451 18-65 (80)
434 PF11768 DUF3312: Protein of u 58.8 1.5E+02 0.0033 28.4 10.4 43 403-448 500-542 (545)
435 PF09477 Type_III_YscG: Bacter 58.7 64 0.0014 23.0 9.9 86 174-263 21-106 (116)
436 PF13762 MNE1: Mitochondrial s 58.3 81 0.0018 24.1 8.8 50 325-374 78-128 (145)
437 cd00280 TRFH Telomeric Repeat 57.6 27 0.00058 27.7 4.7 66 377-442 85-156 (200)
438 PF11663 Toxin_YhaV: Toxin wit 57.6 17 0.00037 26.9 3.5 33 235-269 105-137 (140)
439 PF10255 Paf67: RNA polymerase 57.6 1.2E+02 0.0026 28.0 9.5 57 196-252 124-191 (404)
440 PF07575 Nucleopor_Nup85: Nup8 57.6 1E+02 0.0022 30.2 9.9 239 14-270 286-540 (566)
441 cd08332 CARD_CASP2 Caspase act 57.2 40 0.00087 23.1 5.1 28 107-134 49-76 (90)
442 PRK11639 zinc uptake transcrip 57.2 84 0.0018 24.8 7.7 63 13-75 12-74 (169)
443 PF13762 MNE1: Mitochondrial s 56.9 86 0.0019 23.9 11.7 89 185-273 28-128 (145)
444 PRK10564 maltose regulon perip 56.5 27 0.0006 30.2 5.0 39 328-366 259-297 (303)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 83 0.0018 23.3 8.9 42 44-85 81-123 (126)
446 PF14853 Fis1_TPR_C: Fis1 C-te 55.3 44 0.00096 20.1 4.7 23 332-354 7-29 (53)
447 PF08424 NRDE-2: NRDE-2, neces 54.8 1.6E+02 0.0034 26.3 15.3 115 342-459 47-184 (321)
448 PRK13342 recombination factor 54.3 1.9E+02 0.0041 27.0 15.4 47 329-375 230-279 (413)
449 PF09477 Type_III_YscG: Bacter 54.1 78 0.0017 22.6 9.5 78 41-121 21-98 (116)
450 PF11663 Toxin_YhaV: Toxin wit 54.0 18 0.00039 26.9 3.1 33 336-370 105-137 (140)
451 KOG1114 Tripeptidyl peptidase 53.9 2.7E+02 0.006 28.8 13.5 68 345-412 1215-1282(1304)
452 PF04910 Tcf25: Transcriptiona 53.9 1.8E+02 0.0038 26.6 17.2 80 332-413 109-194 (360)
453 PF11848 DUF3368: Domain of un 53.0 45 0.00098 19.5 5.1 34 336-369 12-45 (48)
454 COG5108 RPO41 Mitochondrial DN 52.0 1.5E+02 0.0031 29.2 9.2 44 66-109 33-82 (1117)
455 PF10366 Vps39_1: Vacuolar sor 52.0 86 0.0019 22.5 7.7 28 124-151 40-67 (108)
456 KOG3824 Huntingtin interacting 51.7 33 0.00072 29.7 4.7 34 439-472 126-159 (472)
457 PF11817 Foie-gras_1: Foie gra 51.4 53 0.0012 27.9 6.2 57 400-456 181-245 (247)
458 PRK10564 maltose regulon perip 51.0 33 0.00072 29.7 4.7 36 228-263 260-295 (303)
459 PF02184 HAT: HAT (Half-A-TPR) 50.4 38 0.00082 17.9 3.6 26 444-470 2-27 (32)
460 KOG4077 Cytochrome c oxidase, 49.8 1E+02 0.0023 22.8 6.3 32 392-423 79-110 (149)
461 KOG0376 Serine-threonine phosp 49.3 35 0.00075 31.6 4.8 100 302-406 11-114 (476)
462 cd08323 CARD_APAF1 Caspase act 48.9 77 0.0017 21.6 5.4 30 75-104 42-71 (86)
463 PF12968 DUF3856: Domain of Un 48.3 1.1E+02 0.0023 22.5 9.5 84 374-457 22-128 (144)
464 KOG4279 Serine/threonine prote 48.0 1.5E+02 0.0032 29.7 8.7 165 280-456 183-371 (1226)
465 KOG0686 COP9 signalosome, subu 47.5 2.3E+02 0.005 26.1 14.5 59 195-253 151-215 (466)
466 COG5108 RPO41 Mitochondrial DN 47.5 2.1E+02 0.0046 28.2 9.5 47 164-210 33-81 (1117)
467 KOG2422 Uncharacterized conser 47.4 2.7E+02 0.006 26.9 13.6 57 232-288 349-406 (665)
468 COG4259 Uncharacterized protei 46.9 98 0.0021 21.7 5.9 23 400-422 75-97 (121)
469 KOG3364 Membrane protein invol 46.6 1.3E+02 0.0027 22.8 8.5 66 358-423 29-97 (149)
470 PRK14962 DNA polymerase III su 44.1 2.9E+02 0.0064 26.3 12.6 27 236-262 254-280 (472)
471 PF12583 TPPII_N: Tripeptidyl 44.0 1.2E+02 0.0027 22.5 5.9 34 439-472 86-119 (139)
472 TIGR02270 conserved hypothetic 43.0 2.8E+02 0.0061 25.8 23.6 231 2-251 45-278 (410)
473 KOG1308 Hsp70-interacting prot 42.5 56 0.0012 28.9 4.8 115 272-389 126-243 (377)
474 KOG4567 GTPase-activating prot 41.4 2.5E+02 0.0054 24.7 9.1 42 281-322 264-305 (370)
475 PF03745 DUF309: Domain of unk 41.3 90 0.0019 19.6 5.0 15 39-53 12-26 (62)
476 PF04034 DUF367: Domain of unk 41.3 1.5E+02 0.0032 22.0 7.5 60 396-455 65-125 (127)
477 PF02847 MA3: MA3 domain; Int 40.9 90 0.002 22.3 5.3 25 199-223 7-31 (113)
478 PF04762 IKI3: IKI3 family; I 40.7 4.7E+02 0.01 27.7 14.3 37 2-38 701-744 (928)
479 PF09670 Cas_Cas02710: CRISPR- 40.0 3E+02 0.0066 25.3 11.9 54 235-289 141-198 (379)
480 smart00777 Mad3_BUB1_I Mad3/BU 39.2 1.6E+02 0.0034 21.9 8.2 41 380-421 82-123 (125)
481 TIGR02710 CRISPR-associated pr 39.1 3.1E+02 0.0067 25.2 11.7 54 333-386 137-196 (380)
482 cd07153 Fur_like Ferric uptake 39.1 95 0.0021 22.4 5.2 47 332-378 6-52 (116)
483 PRK09462 fur ferric uptake reg 39.0 1.8E+02 0.0038 22.3 7.8 61 351-413 7-68 (148)
484 KOG0889 Histone acetyltransfer 39.0 8.5E+02 0.018 30.2 22.2 19 100-118 2490-2508(3550)
485 PF11123 DNA_Packaging_2: DNA 38.5 1.1E+02 0.0024 19.9 4.5 32 8-39 10-44 (82)
486 cd07153 Fur_like Ferric uptake 38.0 1.1E+02 0.0023 22.1 5.3 48 31-78 5-52 (116)
487 COG2912 Uncharacterized conser 37.7 1.1E+02 0.0025 26.2 5.8 60 405-464 189-250 (269)
488 KOG2422 Uncharacterized conser 37.3 4E+02 0.0087 25.9 16.1 91 333-423 349-445 (665)
489 COG4259 Uncharacterized protei 37.1 1.5E+02 0.0032 20.9 5.9 25 439-463 82-106 (121)
490 PF14669 Asp_Glu_race_2: Putat 37.0 2.3E+02 0.0049 23.0 15.6 97 111-218 95-205 (233)
491 KOG2581 26S proteasome regulat 36.9 3.4E+02 0.0074 25.0 11.7 141 325-465 125-283 (493)
492 PF09454 Vps23_core: Vps23 cor 36.6 1.1E+02 0.0025 19.4 5.3 51 155-206 4-54 (65)
493 PF01475 FUR: Ferric uptake re 36.5 84 0.0018 22.9 4.6 44 332-375 13-56 (120)
494 KOG2758 Translation initiation 36.1 3.1E+02 0.0068 24.3 15.7 167 279-457 19-195 (432)
495 KOG2062 26S proteasome regulat 35.2 4.9E+02 0.011 26.3 24.5 463 1-472 137-648 (929)
496 PF02847 MA3: MA3 domain; Int 34.7 1.7E+02 0.0037 20.9 6.5 21 129-149 8-28 (113)
497 PF10475 DUF2450: Protein of u 34.3 3.2E+02 0.007 24.0 8.8 117 200-318 104-220 (291)
498 KOG2659 LisH motif-containing 34.1 2.8E+02 0.006 23.2 10.9 95 325-422 25-128 (228)
499 PF01239 PPTA: Protein prenylt 33.9 71 0.0015 16.3 3.3 26 448-473 2-27 (31)
500 PF00244 14-3-3: 14-3-3 protei 33.9 2.9E+02 0.0063 23.3 11.1 160 231-390 7-198 (236)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-73 Score=560.47 Aligned_cols=473 Identities=32% Similarity=0.603 Sum_probs=463.6
Q ss_pred ChhhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
+|.+|++.|++++|.++|+.|+.||..+||++|.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 038936 81 QTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156 (476)
Q Consensus 81 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (476)
.+++..+.+ ||..+|+.++.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.. .+..
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~ 386 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVS 386 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCC
Confidence 999999875 79999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHH
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 236 (476)
||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
+.|+.++|..+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+++|++++|..
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 99999999999999986 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+|+.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..++.|+
T Consensus 546 ~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 546 QFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999977799999
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhcC
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 476 (476)
..+|..++.+|.+.|++++|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++++++|+++..|..|+++|+.+
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~ 704 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-69 Score=524.06 Aligned_cols=452 Identities=35% Similarity=0.599 Sum_probs=441.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHccc----ccchHHHHH
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG-FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTM 98 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 98 (476)
.+...|+.+|..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+ ||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998864 789999999999999999999999999999974 899999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhH
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 178 (476)
+..|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+ .+..|+..+|+.++.+|+..|..+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (476)
.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.++|..+||.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHh
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 338 (476)
|..||+.++.+|++.|+++.|.+++..|.+.|++|+..+++.++.+|+++|++++|.++|++|.+||..+||.++.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..++.|+..+|+.++.+|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhcC
Q 038936 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476 (476)
Q Consensus 419 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 476 (476)
++++++..|+..+|++++.+|..+|+++.|..+++++++++|++..+|..|+++|+++
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999863
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-69 Score=533.20 Aligned_cols=469 Identities=28% Similarity=0.502 Sum_probs=442.8
Q ss_pred ChhhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
+|++|++.|+++.|.++|++|++||..+|+++|.+|.+.|++++|.++|++|...|+.||..||+.++.+|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 038936 81 QTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156 (476)
Q Consensus 81 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (476)
.+++..+.+ +|..+++.++.+|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|++|.. .++.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~ 285 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVD 285 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCC
Confidence 999998874 78999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHH
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 236 (476)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.++|..+|+.++.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+. |+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcc
Confidence 99999999999999999999999999999999999986 58999999999999999999999999999998876 88888
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCchhHHHHHHhhh
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI--EPENPATYVTMANIYA 474 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~y~ 474 (476)
..+++.++.+|.++|++++|.++|+.+ .||..+|+.++.+|.++|+.++|+++|++|.+. .| |..+|..+...|.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHh
Confidence 888888888888888888888888887 678888888888888888888888888888773 34 5567777776665
Q ss_pred c
Q 038936 475 S 475 (476)
Q Consensus 475 ~ 475 (476)
.
T Consensus 601 ~ 601 (857)
T PLN03077 601 R 601 (857)
T ss_pred h
Confidence 3
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.7e-65 Score=493.57 Aligned_cols=466 Identities=19% Similarity=0.319 Sum_probs=368.4
Q ss_pred hhhhhhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 2 IDILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+..|++.|++++|+++|+.|. +++...++.++..|.+.|.+++|..+++.|.. |+..+|+.++.+|++.|+
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence 456777888888888888885 34556667777888888888888888877754 788888888888888888
Q ss_pred hHHHHHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038936 77 ISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYRM 148 (476)
Q Consensus 77 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (476)
++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 8888888888864 677888888888888888888888888887 36778888888888888888888888888
Q ss_pred HHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHH--cCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc----
Q 038936 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR--TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---- 222 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 222 (476)
|.. .++.||..+|+.++.+|++.|+++.|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 533 M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 533 MRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 877 77888888888888888888888888888888865 56778888888888888888888888888888854
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHH
Q 038936 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302 (476)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 302 (476)
++..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++++|.+.|++|+..+|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhhcCChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchh
Q 038936 303 HMYSKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (476)
.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 88888888888888888774 47888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hcC-------------------ChhhHHHHHhhC---CCCCcHHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLA----RSG-------------------RFHEAEDVISKM---PMKPDKFLW 432 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~~~~~ 432 (476)
+|.+++.+|.+. |+.|+..+|+.++..+. +++ ..++|..+|++| +..||..+|
T Consensus 772 ~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 772 VGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 888888888765 88888888887775532 221 135677778777 567888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchhHHHHHHhh
Q 038936 433 ASLLGGCRIHGNLDLAKRAAEALFE-IEPENPATYVTMANIY 473 (476)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~y 473 (476)
..++.+++..+....+..+++.+.. -.+++..+|..|...+
T Consensus 851 ~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 8888777677777777777766542 3345666777776654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7e-64 Score=487.58 Aligned_cols=455 Identities=17% Similarity=0.272 Sum_probs=427.4
Q ss_pred hhhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 2 IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+..|.+.|.+++|+++|+.+..|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcc----cccchHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 038936 82 TLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF- 152 (476)
Q Consensus 82 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 152 (476)
++|++|. .||..+|+.+|.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|...
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 9999998 4899999999999999999999999999996 478999999999999999999999999999752
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc----ccchhhH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV----DRDVVSW 228 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 228 (476)
.++.||..+|+.++.+|++.|+++.|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999995 4789999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----c------
Q 038936 309 GNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH----A------ 374 (476)
Q Consensus 309 ~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------ 374 (476)
|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999986 499999999999999999999999999999999999999999999876432 1
Q ss_pred -------------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC---CCCcHHHHHHHHHH
Q 038936 375 -------------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP---MKPDKFLWASLLGG 438 (476)
Q Consensus 375 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~ 438 (476)
+..+.|..+|++|.+. |+.||..+|..++.++.+.+..+.+..+++.+. ..|+..+|+.++.+
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 2246799999999987 999999999999999989999999999999884 55678899999998
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 038936 439 CRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+... .++|..++++|.+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcC
Confidence 7432 368999999999843
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-59 Score=456.12 Aligned_cols=446 Identities=21% Similarity=0.323 Sum_probs=422.9
Q ss_pred ChhhhhhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 1 AIDILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
+|..|.+.|++++|+++|+++. .||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3678899999999999999983 57899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 76 NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 76 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+ |+..+|+.++.++.+.|..+.+.+++..+.+
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 6889999999999999999999999999998
Q ss_pred ccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh----cccchhh
Q 038936 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM----VDRDVVS 227 (476)
Q Consensus 152 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~ 227 (476)
.+..||..+|+.++.+|++.|+++.|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++| ..||..+
T Consensus 253 -~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 253 -TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred -hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 8999999999999999999999999999999985 568899999999999999999999999999 4589999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 4788999999999999
Q ss_pred cCChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 308 CGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
.|+.++|.++|++|. .||..+|+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|+.++..+++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999987 49999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+++++ +..|+..+|+.++.+|...|+++.|..+++++ ...| +..+|..++..|.+.|++++|.+++++|.+.+
T Consensus 484 ~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 484 MIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 98654 67899999999999999999999999999986 5666 46699999999999999999999999999843
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.9e-33 Score=282.24 Aligned_cols=464 Identities=13% Similarity=0.077 Sum_probs=317.1
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------------------
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG----------------------- 56 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------- 56 (476)
..+.+.|++++|+++|+++. +.+...+..+...+...|++++|.+.++.+.+.+
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 34566677777777777653 3445555555556666666666666665555433
Q ss_pred ----------CCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC--
Q 038936 57 ----------FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-- 121 (476)
Q Consensus 57 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 121 (476)
.+++..++..+...+...|++++|.+.|+++.+ .+...+..++..+...|++++|.+.++++.+.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 530 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 123344555555555555555555555555442 22334455555555556666666655555431
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHH
Q 038936 122 -DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200 (476)
Q Consensus 122 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 200 (476)
+..++..+...+.+.|++++|..+++++.. ..+.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAE--LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 344555556666666666666666666653 123344455566666677777777777777766543 4556667777
Q ss_pred HHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (476)
+..+...|++++|+..|+.+.+ .++..+..+..++...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777777643 234556667777777777777777777777653 444566777777777777788
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
.|..+++.+.+.+ +.+...+..+...+...|++++|...|+.+.. |+..++..++.++.+.|++++|.+.++++.+.
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8877777777665 55666677777788888888888888887763 55566777778888888888888888888776
Q ss_pred CCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHH
Q 038936 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWA 433 (476)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 433 (476)
. +.+...+..++..|...|++++|.+.|+++.+. .+++..++..++..+.+.|+ ++|+..++++ ...| +...+.
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 4 446677777888888888888888888888864 35677778888888888888 7788888885 3334 455677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.++..+...|++++|...++++++.+|.++.++..++.+|..
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999988764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-32 Score=280.27 Aligned_cols=460 Identities=12% Similarity=0.053 Sum_probs=268.0
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.+.|++++|+..++.+. +.++..+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence 444555555555555542 3344455555555555566666666665555542 123344444555555555555555
Q ss_pred HHHHHcccc---cchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 038936 82 TLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 82 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
+.++.+.+. +......++..+.+.|++++|..+++.+.. .++.++..+...+...|++++|.+.|+++... .
T Consensus 418 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~ 495 (899)
T TIGR02917 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--E 495 (899)
T ss_pred HHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--C
Confidence 555554431 123344445555556666666666555543 24455666666666667777777766666541 2
Q ss_pred CCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHH
Q 038936 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMI 232 (476)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 232 (476)
+.+...+..+...+...|+++.|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++.+. +...+..++
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 574 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 2233445555556666666666666666666543 344556666666666666666666666666332 233455566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
..+...|++++|..+++++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|+++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 66666666777776666666543 4455566666666667777777777777666554 444555666666666777777
Q ss_pred hHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 313 NSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 313 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+|...++++.+ .+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|++++|.+.++++..
T Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77776666553 234456666666666666666666666666553 33445555566666666666666666666664
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
. .|+..++..++.++.+.|++++|.+.++++ . .+.+...+..++..+...|++++|...|+++++..|+++.++.
T Consensus 732 ~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 808 (899)
T TIGR02917 732 R---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLN 808 (899)
T ss_pred h---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3 333455555666666666666666666654 2 2234455566666666666666666666666666666666666
Q ss_pred HHHHhhh
Q 038936 468 TMANIYA 474 (476)
Q Consensus 468 ~l~~~y~ 474 (476)
.++++|.
T Consensus 809 ~l~~~~~ 815 (899)
T TIGR02917 809 NLAWLYL 815 (899)
T ss_pred HHHHHHH
Confidence 6666553
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.9e-25 Score=225.60 Aligned_cols=462 Identities=12% Similarity=0.096 Sum_probs=300.8
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---------------
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS--------------- 64 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------- 64 (476)
+.....++.+.|.+.++++. +.++..+..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchh
Confidence 34557788999999998874 6788888889999999999999999999998865 333222
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHcccccchHHH----HHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 038936 65 --NCLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVR 135 (476)
Q Consensus 65 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 135 (476)
..+...+...|++++|++.|+.+.+.++.... .........|+.++|.+.++++.+. ++..+..+...+..
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 23344677889999999999998753221111 1111223458999999999988864 44567788888888
Q ss_pred cCChhHHHHHHHHHHhccCC-------------------------------CCCchHH---------------------H
Q 038936 136 YNQPIEALDLYRMMQNFENS-------------------------------VSNKFTL---------------------S 163 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~-------------------------------~~~~~~~---------------------~ 163 (476)
.|++++|++.++++...... .|+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 99999999999887541110 0111000 0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch-----hhHH---------
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-----VSWT--------- 229 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~--------- 229 (476)
.....+...|++++|...+++.++.. |.+..++..+...+.+.|++++|+..|++..+.++ ..|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 11223445678888888888887764 45677788888888888888888888888754221 1111
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhh
Q 038936 230 ---AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306 (476)
Q Consensus 230 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (476)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 12345677888888888888888764 3455566667778888888888888888888764 344445555555553
Q ss_pred hcCChhhHHHHHccCCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 307 KCGNVENSKKVFNGMPRPD------------LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
.++.++|..+++.+.... ...+..+...+...|++++|++.+++.++.. +-+...+..+...+...
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345566666665544211 1123344555666777777777777776643 12344555666667777
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHH--------------------------------------------HHHHHhc
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACI--------------------------------------------VDLLARS 410 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~ 410 (476)
|++++|...++++.+.. +.+...+..+ +..+...
T Consensus 509 G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 77777777777766431 2223223222 2333444
Q ss_pred CChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 411 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
|+.++|+++++.- +++...+..+...+...|++++|+..|+++++.+|+|+.++..++.+|..
T Consensus 587 G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 587 GKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred CCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444454444422 12334556667777777888888888888888888888888888777753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.5e-24 Score=219.79 Aligned_cols=460 Identities=11% Similarity=0.070 Sum_probs=323.1
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSL-IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 79 (476)
.+.+.|++++|++.|+.+. +++...-... .......|+.++|.+.++++.+.. +.+...+..+...+...|+.++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHH
Confidence 4677889999999888874 3333211111 122234588888888888888864 3356667777788888888888
Q ss_pred HHHHHHHcccc------------------------------------cchHH---------------------HHHHHHH
Q 038936 80 AQTLFDEMQER------------------------------------DVCSY---------------------NTMISGF 102 (476)
Q Consensus 80 A~~~~~~~~~~------------------------------------~~~~~---------------------~~l~~~~ 102 (476)
|+..++++.+. +.... ......+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 88887765320 00000 0123456
Q ss_pred HhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHH------------HHHHH
Q 038936 103 TKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL------------SSVLS 167 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~ll~ 167 (476)
...|++++|...|++..+. +...+..+..++.+.|++++|+..|++..+..+..+....+ .....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 6788888888888887652 55677788888888888888888888887633322221111 12234
Q ss_pred HHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc--c-hhhHHH--------------
Q 038936 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR--D-VVSWTA-------------- 230 (476)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~-------------- 230 (476)
.+.+.|++++|...++++++.. +.+...+..+...+...|++++|++.|+++.+. + ...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 5677888888888888888764 455667777888888888888888888887542 1 222222
Q ss_pred ----------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHH
Q 038936 231 ----------------------------MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282 (476)
Q Consensus 231 ----------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 282 (476)
+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334556788888888888887754 33455666777778888888888888
Q ss_pred HHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC----Ch---------hhHHHHHHHHHhcCChHHHHHHH
Q 038936 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP----DL---------VSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
++.+.+.. +.++..+..+...+...++.++|...++.+... +. ..+..+...+...|++++|+.++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887654 444555555556667788888888888877631 11 11233456688889999999888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP- 427 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 427 (476)
+. .+++...+..+...+.+.|++++|++.|+++.+. .|.+...+..++.+|...|++++|++.++.+ ...|
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 72 2455566777888999999999999999999975 3556788899999999999999999999986 3444
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch------hHHHHHHhhh
Q 038936 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA------TYVTMANIYA 474 (476)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~y~ 474 (476)
+...+..++.++...|++++|.+.++++++..|+++. .+..++.++.
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 4556777888888999999999999999998776543 5555666654
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=4.5e-25 Score=192.68 Aligned_cols=432 Identities=13% Similarity=0.137 Sum_probs=347.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhc
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKG 105 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 105 (476)
...+..-..+.|++.+|++.-...-..+ +.+......+-..+....+.+....--....+. ..++|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445556667888888888766554443 122333333445555666666655544443332 347899999999999
Q ss_pred CCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH-HHHHHHhhhhhhhHHHH
Q 038936 106 GSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS-VLSAVSAIQCLRLGKEI 181 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~ 181 (476)
|++++|+.+++.+.+. .+..|..+..++...|+.+.|...|.+..+ ..|+.....+ +-......|...+|..-
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988764 456788999999999999999999998876 5565544333 33344557888999888
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV---VSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (476)
+.+.++.. +--...|..|...+...|+...|+..|++.++-|+ ..|..|...|-..+.+++|...|.+..... +.
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 88887664 33345788899999999999999999999977554 468889999999999999999999887753 33
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHH
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAG 335 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~ 335 (476)
....+..+...|...|..+.|+..+++..+.. +.-+..|+.|..++...|++.+|...+.+... | ...+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 45567677777889999999999999999875 56688999999999999999999999999885 3 45688899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGRF 413 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 413 (476)
|...|.+++|..+|....+ +.|.. ...+.|...|-.+|++++|+..|++++. +.|+ ...|..++..|...|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999988 55654 4688899999999999999999999984 5665 56789999999999999
Q ss_pred hhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 414 HEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 414 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
+.|++.+.++ ...|. ...++.+...|...|+..+|++.|++++++.|+.+.++-+|+-.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 9999999996 66775 45889999999999999999999999999999999999888754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.7e-22 Score=196.05 Aligned_cols=448 Identities=10% Similarity=0.042 Sum_probs=308.7
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (476)
..|++++|+..|+.+. +.++.++..+...+...|++++|+..+++..+.. |+...|..++. ..+++++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La---~i~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLA---AIPVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHH---HhccChhHHHH
Confidence 4599999999999985 6778899999999999999999999999999964 44444444332 22999999999
Q ss_pred HHHccc--c-cchHHHHHHHH--------HHhcCCHHHHHHHHhcCCCCC--cch-HHHHHHHHHhcCChhHHHHHHHHH
Q 038936 84 FDEMQE--R-DVCSYNTMISG--------FTKGGSLEQARNLFDEMPQRD--NFS-WTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 84 ~~~~~~--~-~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~--~~~-~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
++++.. | +..++..+... |.+.+...++++ .+...++ +.+ ...+...|.+.|++++|++++.++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999985 3 45666666665 777766666666 3333444 333 334488999999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHHh-hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-----c
Q 038936 150 QNFENSVSNKFTLSSVLSAVSA-IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-----R 223 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 223 (476)
.+. .+.+......+-.++.. .++ +.+..+++. .++.+......++..|.+.|+.++|.++++++.. |
T Consensus 209 ~k~--~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 209 RQQ--NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred Hhc--CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 872 22233334455555555 355 666666432 3335677777888888888888888888877621 0
Q ss_pred --------------------------------------------------------------------------------
Q 038936 224 -------------------------------------------------------------------------------- 223 (476)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (476)
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence
Q ss_pred -------------chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------------------------------------
Q 038936 224 -------------DVVSWTAMIGRYFQEGRREEGFALFSELIKS------------------------------------ 254 (476)
Q Consensus 224 -------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 254 (476)
+......+.-...+.|+.++|.++|++....
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 0000000001112334444444444332210
Q ss_pred ---------------------------CC-CC--CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 255 ---------------------------GI-RP--NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 255 ---------------------------~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
+. ++ +...+..+..++.. ++.++|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 00 12 34455556655555 78888888887777663 444443344555
Q ss_pred hhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 305 YSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
+...|++++|...|+++.. |+...+..+...+.+.|++++|...+++.++.+ +++...+..+.......|++++|..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 5788999999999987664 445556677778888999999999998888754 2233333334444556689999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.++++.+. .|+...+..++.++.+.|++++|+..++++ ...| +...+..++.++...|++++|+..++++++++|
T Consensus 598 ~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 98888854 556778888888889999999999988885 4555 455777888888888999999999999999999
Q ss_pred CCchhHHHHHHhhhc
Q 038936 461 ENPATYVTMANIYAS 475 (476)
Q Consensus 461 ~~~~~~~~l~~~y~~ 475 (476)
+++.++.+|+.+|..
T Consensus 675 ~~~~a~~nLA~al~~ 689 (987)
T PRK09782 675 DDPALIRQLAYVNQR 689 (987)
T ss_pred CCHHHHHHHHHHHHH
Confidence 988888888888753
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-24 Score=186.44 Aligned_cols=425 Identities=16% Similarity=0.166 Sum_probs=345.7
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.+.|++.+|.+.-..+. +.+....-.+-..+.+..+.+.....-....+.. +.-.++|..+...+-..|++++|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHH
Confidence 457789999988877765 2223333333455666667776666555555543 346789999999999999999999
Q ss_pred HHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHHhccCC
Q 038936 82 TLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT---AMISGYVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 82 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
.+++.+.+ | ....|..+..++...|+.+.|...|....+-|+..+- .+...+-..|+.++|...|.+... .
T Consensus 137 ~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~---~ 213 (966)
T KOG4626|consen 137 ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE---T 213 (966)
T ss_pred HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh---h
Confidence 99999886 3 4578999999999999999999999998876654332 334455567999999999988875 3
Q ss_pred CCC-chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--c-chhhHHHH
Q 038936 156 VSN-KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--R-DVVSWTAM 231 (476)
Q Consensus 156 ~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 231 (476)
.|. ...|+.+--.+...|+...+.+.|++..+.. |.-...|..|...|...+.+++|+..+.+... | ....+..+
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 343 4567788888889999999999999998764 33356888999999999999999999998843 3 35678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
...|..+|..+-|++.|++.++.. +.-...|+.+..++-..|++.+|...+....... +......+.|...|...|.+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccc
Confidence 888999999999999999999864 3335789999999999999999999999999885 56677888999999999999
Q ss_pred hhHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 312 ENSKKVFNGMPR--PD-LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 312 ~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
++|..+|....+ |+ ....+.|...|-++|+.++|+..+++.+. +.|+. ..|+.+...|-..|+.+.|++.+.++
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 999999999886 33 34788999999999999999999999998 67775 47899999999999999999999999
Q ss_pred HHhcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHH-HHHHHHHHHHh
Q 038936 388 KEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKF-LWASLLGGCRI 441 (476)
Q Consensus 388 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 441 (476)
+. +.|. .+.++.|+.+|...|++.+|+.-++.+ +.+||.+ .+..++.++.-
T Consensus 449 I~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 449 IQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred Hh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 95 3554 567889999999999999999999995 7888754 67777766543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=6.4e-21 Score=183.21 Aligned_cols=419 Identities=12% Similarity=0.013 Sum_probs=263.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhc
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKG 105 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 105 (476)
+......+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|+..++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667788889999999999988874 46777888888888899999999999988775 2 446788888899999
Q ss_pred CCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 106 GSLEQARNLFDEMPQRDN---FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
|++++|..-|......+. .....++..+.. ..+........... +++...+..+.. +...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999887765432211 111111111111 12222222222111 111111111111 11111111111111
Q ss_pred HHHHHcCCCch-HHHHHHHHHH---HHcCCCHHHHHHHHHhhccc------chhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 183 GYIMRTGFDSD-EVVWSALSDM---YGKCGSINEARQIFDKMVDR------DVVSWTAMIGRYFQEGRREEGFALFSELI 252 (476)
Q Consensus 183 ~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 252 (476)
....+ ..+. ...+..+... ....+++++|.+.|+...+. ....|..+...+...|++++|...+++.+
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11000 0111 0011111111 12346778888888877542 23456677777778888888888888877
Q ss_pred HcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhH
Q 038936 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSW 329 (476)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~ 329 (476)
+.. +.....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +...+
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 753 2234566667777778888888888888877764 55567777788888888888888888887764 3 34566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhh-------HH
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADH-------YA 401 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-------~~ 401 (476)
..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|++.|+++.+. .|+ ... +.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHH
Confidence 677778888888888888888887743 334567777788888888888888888887753 221 111 11
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
.....+...|++++|.+.++++ ...|+ ...+..++..+...|++++|+..|++++++.+....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 1222334468888888888874 44553 346777888888888888888888888888775443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2.6e-20 Score=179.06 Aligned_cols=410 Identities=11% Similarity=0.031 Sum_probs=294.4
Q ss_pred hhhhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 4 ILCNQRRLKEALQILHQIS--HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
.+.+.|++++|+..|+++. .|++..|..+..++.+.|++++|...++..++.+ +.+...+..+..+|...|++++|+
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5778899999999999985 7788899999999999999999999999999865 235678888999999999999999
Q ss_pred HHHHHccccc---chHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 82 TLFDEMQERD---VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 82 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
.-|..+...+ ......++..+........+...++.-. .+...+..+.. +...........-+..... ..|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 289 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE---LDEE 289 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc---cccc
Confidence 8887654321 1111222222222112233444443322 22233333333 2222222222222221111 1111
Q ss_pred c-hHHHHHHHH---HHhhhhhhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccc---hhhHH
Q 038936 159 K-FTLSSVLSA---VSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD---VVSWT 229 (476)
Q Consensus 159 ~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 229 (476)
. ..+..+... ....+.++.|.+.++..++.+ .+.....+..+...+...|++++|+..+++..+.+ ...|.
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 369 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 1 111111111 123467899999999998765 23445678888999999999999999999986533 44678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+..++.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 88889999999999999999998864 4456788888888999999999999999999875 556777888899999999
Q ss_pred ChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHhccCchhhH
Q 038936 310 NVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI------VFVGVLTACTHAGLVDKG 380 (476)
Q Consensus 310 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a 380 (476)
++++|+..|+...+ .++..++.+...+...|++++|++.|++..+.....+.. .+...+..+...|++++|
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999998764 356788999999999999999999999998854221111 112122233446999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.++++++... .+.+...+..++.++.+.|++++|++.|+++
T Consensus 528 ~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 528 ENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999998864 2344556888999999999999999999986
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=2e-20 Score=183.01 Aligned_cols=399 Identities=11% Similarity=0.010 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHH
Q 038936 26 PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGF 102 (476)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 102 (476)
+....-.+.+....|+.++|++++....... +.+...+..+...+...|++++|...|++..+ | +...+..++..+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3333344445555566666665555555421 22333455555555555666666666555432 2 233444555555
Q ss_pred HhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHH
Q 038936 103 TKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 179 (476)
...|++++|...++++.+. +.. +..+..++...|++++|+..++++.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al----------------------------- 143 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL----------------------------- 143 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------
Confidence 5555555555555554431 222 4444445555555555555555554
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh--------hHHHHHHHHH-----hcCCh---hH
Q 038936 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV--------SWTAMIGRYF-----QEGRR---EE 243 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~-----~~~~~---~~ 243 (476)
+.. |.+...+..+..++...|..+.|+..++.... ++. ....++.... ..+++ ++
T Consensus 144 -------~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 144 -------PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred -------HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 332 33444445556666666777777777766544 111 1111222221 12233 67
Q ss_pred HHHHHHHHHHc-CCCCCHh-hHH----HHHHHHhccccHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHH
Q 038936 244 GFALFSELIKS-GIRPNAF-TFA----GVLNACADHAAEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 244 a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+.
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 77788877754 1223221 111 1133445668889999999988877522 221 22235678888999999999
Q ss_pred HHccCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCcH---HHHHHHHHHHhccC
Q 038936 317 VFNGMPRPD-------LVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-----------QPDH---IVFVGVLTACTHAG 375 (476)
Q Consensus 317 ~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~ 375 (476)
.|+++.+.+ ......+..++...|++++|...++++.+... .|+. ..+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 988876422 23455566778899999999999999887531 1232 24456777888999
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
+.++|++.++++... .|.+...+..++.++...|++++|++.++++ ...|+ ...+...+..+...|++++|+..++
T Consensus 374 ~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999874 4667788999999999999999999999996 55665 5677777778889999999999999
Q ss_pred HHHHcCCCCchhHH
Q 038936 454 ALFEIEPENPATYV 467 (476)
Q Consensus 454 ~~~~~~p~~~~~~~ 467 (476)
++++..|+++.+..
T Consensus 452 ~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 452 DVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhCCCCHHHHH
Confidence 99999999986543
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.3e-19 Score=177.40 Aligned_cols=423 Identities=10% Similarity=0.007 Sum_probs=303.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccc--hHHHHHHHHHHhcCCHHHHHHH
Q 038936 37 RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV--CSYNTMISGFTKGGSLEQARNL 114 (476)
Q Consensus 37 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~ 114 (476)
...|++++|...|+...+.... +..++..+...|...|+.++|+..+++..+.++ ..|..++. ..+++++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La---~i~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA---AIPVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH---HhccChhHHHH
Confidence 4459999999999999997633 578888999999999999999999999886332 33333332 22999999999
Q ss_pred HhcCCCC---CcchHHHHHHH--------HHhcCChhHHHHHHHHHHhccCCCCCchHHHHH-HHHHHhhhhhhhHHHHH
Q 038936 115 FDEMPQR---DNFSWTAMISG--------YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV-LSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 115 ~~~~~~~---~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~ 182 (476)
++++... +..++..+... |.+. ++|.+.++ ... ....|+....... ...+...++++.+.+.+
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-FAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999864 34455555554 5555 55555554 322 3344445555555 88999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCH
Q 038936 183 GYIMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR-PNA 260 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 260 (476)
+.+.+.+ +.+......+..+|.. .++ +++..+++...+.++..+..++..|.+.|+.++|..++.++...... |..
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 9999987 4556666777778887 477 89999887766678888999999999999999999888776432111 111
Q ss_pred hhHHHH------------------------------HH------------------------------------------
Q 038936 261 FTFAGV------------------------------LN------------------------------------------ 268 (476)
Q Consensus 261 ~~~~~l------------------------------~~------------------------------------------ 268 (476)
.++..+ +.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 110000 00
Q ss_pred ---------------------HHhccccHHHHHHHHHHHHH---------------------------------------
Q 038936 269 ---------------------ACADHAAEELGKQVHGYMTR--------------------------------------- 288 (476)
Q Consensus 269 ---------------------~~~~~~~~~~a~~~~~~~~~--------------------------------------- 288 (476)
.....|+.++|.++++....
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 00112233333333322111
Q ss_pred -----------------------h-CC-CC--chhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhc
Q 038936 289 -----------------------I-GY-DP--YSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 289 -----------------------~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 339 (476)
. +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 0 00 22 55667778877776 889899997777664 5543333334455689
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|+..|+++... +|+...+..+...+...|+.++|..+++++... .++....+..+...+.+.|++++|...
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998664 455555667788889999999999999999864 233444444455555667999999999
Q ss_pred HhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 420 ISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 420 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
++++ ...|+...+..++.++.+.|++++|+..++++++++|+++.++.+++.++..
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9996 6678888999999999999999999999999999999999999999988754
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.3e-21 Score=176.21 Aligned_cols=260 Identities=15% Similarity=0.173 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhcccc-------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRD-------VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (476)
..++..+...+...|++++|..+++.+.... ...+..++..|...|++++|..+|.++.+.. +++..++..+
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 147 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQL 147 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 3444555555555555555555555543311 1234455555555666666666666555432 3344455555
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhc
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPY----SFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQN 339 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 339 (476)
+..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...|+++.+ | +...+..++..+.+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 5566666666666666666555432211 11234556667777777777777777654 2 345677788889999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|.++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999988643333456788889999999999999999998864 56666778899999999999999999
Q ss_pred HhhC-CCCCcHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 038936 420 ISKM-PMKPDKFLWASLLGGCRI---HGNLDLAKRAAEALFE 457 (476)
Q Consensus 420 ~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 457 (476)
++++ ...|+...+..++..+.. .|+.+++...++++++
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9875 667888888887777664 4688898888888876
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=3e-20 Score=177.92 Aligned_cols=342 Identities=10% Similarity=0.011 Sum_probs=172.5
Q ss_pred hcCChHHHHHHHHHccc------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHH
Q 038936 73 KCGNISDAQTLFDEMQE------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEAL 143 (476)
Q Consensus 73 ~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 143 (476)
+..+++...-+|....+ .+......++..+.+.|++++|..+++..... +...+..++.+....|++++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 55566665555555443 12233444555666667777777766665432 3344555555556667777777
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-
Q 038936 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD- 222 (476)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 222 (476)
..|+++... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..++..+...|++++|...++.+..
T Consensus 97 ~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 97 QVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777666641 12223344445555556666666666666655442 33444555555566666666666665555422
Q ss_pred -cch-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHH
Q 038936 223 -RDV-VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300 (476)
Q Consensus 223 -~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (476)
|+. ..+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++.+.+.. +.+...+..
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 221 122222 2345556666666666655544322233333333444555566666666665555543 334444455
Q ss_pred HHHHhhhcCChhh----HHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 038936 301 LVHMYSKCGNVEN----SKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373 (476)
Q Consensus 301 l~~~~~~~~~~~~----a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (476)
+...+...|++++ |...|+++.+ | +...+..+...+...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 5555555555553 4555554442 2 23344555555555555555555555555432 1122334444455555
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTA-DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.|++++|++.++++... .|+. ..+..++.++...|+.++|++.|+++
T Consensus 331 ~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 331 VGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred CCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555532 2221 22223344455555555555555553
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=8.4e-19 Score=168.36 Aligned_cols=433 Identities=11% Similarity=0.059 Sum_probs=321.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHcccccc-hHHHHH--H
Q 038936 25 SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV--FISNCLLDMYAKCGNISDAQTLFDEMQERDV-CSYNTM--I 99 (476)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l--~ 99 (476)
.+.+-..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++...|+. ..+..+ .
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 44444444455678999999999999998864 443 344 778888888999999999999887643 344444 5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhh
Q 038936 100 SGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176 (476)
Q Consensus 100 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 176 (476)
..+...|++++|.++|+++.+. ++..+..++..+...++.++|++.++++.. ..|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHH
Confidence 5788889999999999998864 455666777888899999999999998876 4555555655544554456665
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-chhh--H------HHHHHHH---H--hcCC--
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVS--W------TAMIGRY---F--QEGR-- 240 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~------~~l~~~~---~--~~~~-- 240 (476)
.|.+.++++.+.. |.+...+..+..+..+.|-...|.++..+-+.- +... + ..+++.- . ..++
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6999999998875 667788888899999999999999888765421 0000 1 0111100 0 1122
Q ss_pred -hhHHHHHHHHHHHc-CCCCCH-hhH----HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhh
Q 038936 241 -REEGFALFSELIKS-GIRPNA-FTF----AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313 (476)
Q Consensus 241 -~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (476)
.+.|+.-++.+... +..|.. ..| .-.+.++...++..+++..++.+...+.+....+...+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555555542 112322 222 23345677889999999999999998877677788899999999999999
Q ss_pred HHHHHccCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--cHH-HHHHHHHH
Q 038936 314 SKKVFNGMPRP---------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-----------QP--DHI-VFVGVLTA 370 (476)
Q Consensus 314 a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~--~~~-~~~~l~~~ 370 (476)
|..+|+.+..+ +......|.-+|...+++++|..+++++.+... .| |.. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 99999987542 222346788999999999999999999988421 12 222 23445677
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+...|+..+|++.++++... -|-|......++.++...|.+.+|.+.++.+ ...| +..+....+.++...|++++|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 88999999999999999864 5778888999999999999999999999876 4456 556778888888999999999
Q ss_pred HHHHHHHHHcCCCCchhH
Q 038936 449 KRAAEALFEIEPENPATY 466 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~ 466 (476)
..+.+.+++..|+++.+-
T Consensus 504 ~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 504 ELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHhhCCCchhHH
Confidence 999999999999998554
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=6.6e-21 Score=174.25 Aligned_cols=288 Identities=13% Similarity=0.099 Sum_probs=138.6
Q ss_pred HhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCChhH
Q 038936 72 AKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRD-------NFSWTAMISGYVRYNQPIE 141 (476)
Q Consensus 72 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~ 141 (476)
...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+.... ...+..+...+.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344555555555555543 1 22344444555555555555555554443321 1234445555555566666
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCCHHHHHHHH
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD----EVVWSALSDMYGKCGSINEARQIF 217 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 217 (476)
|..+|+++.+. .+++..++..++..+...|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|...|
T Consensus 126 A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 126 AEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666555531 222334444444445555555555555554444331111 112344555555666666666666
Q ss_pred Hhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 218 DKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 218 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
+++.+. +...+..+...+.+.|++++|...++++.+.+......++..+..++...|+++.|...++.+.+..
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---- 279 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---- 279 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 655331 2234445555566666666666666665543211112334444455555555555555555544432
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH- 373 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 373 (476)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 280 -----------------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 280 -----------------------------PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE 328 (389)
T ss_pred -----------------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc
Confidence 33333344455555555555555555555553 3555555544444332
Q ss_pred --cCchhhHHHHHHHHHHhcCCCCCh
Q 038936 374 --AGLVDKGLQYFHSIKEKHGLTYTA 397 (476)
Q Consensus 374 --~~~~~~a~~~~~~~~~~~~~~~~~ 397 (476)
.|+.+++...++++.++ ++.|++
T Consensus 329 ~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred cCCccchhHHHHHHHHHHH-HHhCCC
Confidence 33555555555555543 334433
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=7.5e-20 Score=175.16 Aligned_cols=352 Identities=10% Similarity=0.004 Sum_probs=207.1
Q ss_pred hcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhh
Q 038936 104 KGGSLEQARNLFDEMPQR------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177 (476)
Q Consensus 104 ~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 177 (476)
+..+|+.-.-+|....+. +......++..+.+.|++++|+.+++..... .+-+......+..+....|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHH
Confidence 444555444444444321 2233444556666677777777777766641 22222333444445556677777
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--R-DVVSWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
|.+.++.+.+.. |.+...+..+...+...|++++|+..+++..+ | +...+..++..+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777777776654 44555666666777777777777777776644 2 3345666666777777777777777666554
Q ss_pred CCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHH
Q 038936 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTS 331 (476)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 331 (476)
.. .+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++++.+ .+...+..
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 32 122222222 23556677777777777665553223333334445566677777777777766653 23445666
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 332 LIAGYAQNGMPDK----ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 332 l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
+...+...|++++ |+..|++..+.. +.+...+..+...+...|++++|+..++++.+. .+.+...+..++.++
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 6666777777664 667777766643 223445666666677777777777777776653 233444566666777
Q ss_pred HhcCChhhHHHHHhhC-CCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 408 ARSGRFHEAEDVISKM-PMKPDKFL-WASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.+.|++++|++.++++ ...|+... +..++.++...|++++|+..|+++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 7777777777777665 34454332 33345556666777777777777777766643
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-19 Score=164.76 Aligned_cols=442 Identities=14% Similarity=0.127 Sum_probs=295.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHccc--cc--chHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK--PGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RD--VCSYN 96 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~ 96 (476)
+.||.+.+.|.+-+.-.|+++.+..+...+...... .-...|-.+.+.|-..|++++|...|.+..+ ++ ...+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 455666666666666666666666666666554211 1123355566666666777777766666554 22 22344
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcC----ChhHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 038936 97 TMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYN----QPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169 (476)
Q Consensus 97 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 169 (476)
-+.+.+++.|+++.+...|+.+.+. +..+...+...|...+ ..++|..++.+... ..+.|...|..+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHHHHHHHHH
Confidence 4566666677777777666666543 2334444444444443 33455555555542 2344555555555555
Q ss_pred HhhhhhhhHHHHHH----HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-------ch------hhHHHHH
Q 038936 170 SAIQCLRLGKEIHG----YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-------DV------VSWTAMI 232 (476)
Q Consensus 170 ~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~ 232 (476)
....-+.. +.++. .+...+.++.+...|.+...+...|++.+|...|...... +. .+-..+.
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43333222 43333 3334555566777888888888888888888888776321 11 1223345
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFT-FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
..+-..++++.|.+.|..+.+. .|.-.. |..+.......+...+|...+......+ ..++..++.+...|.+...+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 5666677888888888888775 344333 3333322334567778888888877765 56666777777788888888
Q ss_pred hhHHHHHccCCC-----CChhhHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 312 ENSKKVFNGMPR-----PDLVSWTSLIAGYAQ------------NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 312 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
..|.+-|..+.+ +|+.+.-.|.+.|.+ .+..++|+++|.+.+... +-|...-+.+.-+++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 888775554432 455555556665543 345678999999998865 45777788888899999
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCCcHHHHHHHHHHHHhcCChHHHHH
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKPDKFLWASLLGGCRIHGNLDLAKR 450 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (476)
|++..|..+|.++.+.. .....+|..++.+|..+|++-.|+++|+.. ..+.++.+...|..++...|++.+|.+
T Consensus 660 g~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred cCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999863 345567999999999999999999999985 234577788999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHhh
Q 038936 451 AAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 451 ~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.+..++.+.|.|+....+++-+.
T Consensus 738 ~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHhCCccchHHhHHHHHH
Confidence 99999999999999998888764
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.9e-19 Score=173.99 Aligned_cols=406 Identities=8% Similarity=-0.025 Sum_probs=258.5
Q ss_pred hhhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038936 2 IDILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 78 (476)
+.+....|+.++|++++.... +.+...+..+...+...|++++|..++++..+.. +.+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 356778899999999999985 4555578999999999999999999999998864 335677778888999999999
Q ss_pred HHHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 79 DAQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 79 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
+|+..++++.+ | +.. +..+..++...|+.++|...++++.+. +...+..+...+...|..++|++.++....
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 99999999875 3 445 888899999999999999999998764 445566778888889999999999987653
Q ss_pred cCCCCCch------HHHHHHHHH-----Hhhhhh---hhHHHHHHHHHHc-CCCchHH-H----HHHHHHHHHcCCCHHH
Q 038936 153 ENSVSNKF------TLSSVLSAV-----SAIQCL---RLGKEIHGYIMRT-GFDSDEV-V----WSALSDMYGKCGSINE 212 (476)
Q Consensus 153 ~~~~~~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~----~~~l~~~~~~~~~~~~ 212 (476)
.|+.. .....+... ...+.+ +.|.+.++.+.+. ...|+.. . ....+..+...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 33210 111111111 111222 4555555555543 1111110 1 0111223344466666
Q ss_pred HHHHHHhhcccc---hh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 213 ARQIFDKMVDRD---VV-SWTAMIGRYFQEGRREEGFALFSELIKSGIRP---NAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 213 a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
|+..|+.+.+.+ +. ....+...|...|++++|...|+++.+..... .......+..++...|++++|...++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666664432 11 11123455666666666666666655432110 012233334445555666666666555
Q ss_pred HHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 038936 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD---LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362 (476)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 362 (476)
+.... ++....+. .....|+ ...+..+...+...|++++|++.++++.... +.+..
T Consensus 336 ~~~~~-P~~~~~~~-------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~ 394 (765)
T PRK10049 336 TINNS-PPFLRLYG-------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQG 394 (765)
T ss_pred HhhcC-CceEeecC-------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 55432 11110000 0000122 1244556677888888888888888888753 34556
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLL 436 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 436 (476)
.+..++..+...|++++|++.++++.+. .|.+...+...+..+.+.|++++|..+++++ ...|+......+-
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7777788888888888888888888864 2445667777777888888888888888886 4455544333333
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=7.1e-18 Score=155.57 Aligned_cols=409 Identities=13% Similarity=0.112 Sum_probs=259.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHccccc------chHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----cchHHHH
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERD------VCSYNTMISGFTKGGSLEQARNLFDEMPQRD----NFSWTAM 129 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l 129 (476)
++...+.|...|.-.|++..++.+...+...+ ..+|-.+.++|...|++++|...|....+.+ ...+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 44555555555666666666666665555321 2345556666666666666666665554421 1223345
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhh----hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 038936 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ----CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205 (476)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 205 (476)
...+.+.|+.+.+...|+.... ..+.+..+...+-..|+..+ ..+.|..++....+.- +.|...|..+...+-
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k--~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLK--QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHH--hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 5666666666666666666653 22222333333333333332 3445555555544433 445556665555554
Q ss_pred cCCCHHHHHHHHHhhc--------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHh------hHHHHHH
Q 038936 206 KCGSINEARQIFDKMV--------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKS---GIRPNAF------TFAGVLN 268 (476)
Q Consensus 206 ~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~ 268 (476)
...-+. ++..|.... ...+...|.+.......|++..|...|.+.... ...+|.. +-..+..
T Consensus 426 ~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 433322 244443331 234455677777777788888888888777654 1223321 2223344
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHH
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 345 (476)
.....++.+.|.+.|..+.+.. |.-...|..++.+....+...+|...++.+.. .++..+..+...+.+...+..|
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 4556678888888888887763 33444444454444445677788888877764 5677788788888888888888
Q ss_pred HHHHHHHHHcC-CCCcHHHHHHHHHHHhc------------cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 346 LEYFELLLKSG-TQPDHIVFVGVLTACTH------------AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 346 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
.+-|+...+.- ..+|..+...|...|.. .+..++|+++|.+++. ..|.+...-+-++-+++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 88777665542 23576777777776543 2456789999998886 345677777889999999999
Q ss_pred hhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCchhHHHHHHhhhc
Q 038936 413 FHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475 (476)
Q Consensus 413 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~y~~ 475 (476)
+.+|..+|.++. ......+|..++.+|...|++-.|++.|+..++ ...+++.....|+.+|.+
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999999999973 223567899999999999999999999999998 334577888889988764
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.1e-17 Score=156.85 Aligned_cols=423 Identities=11% Similarity=0.055 Sum_probs=307.1
Q ss_pred hhhhcCCHHHHHHHHHhcC--CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038936 4 ILCNQRRLKEALQILHQIS--HPSP--SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 79 (476)
...++|+++.|++.|+++. .|+. ..+ .++..+...|+.++|+.++++..... +........+...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4578999999999999996 3442 244 88888889999999999999998311 1223333333568888899999
Q ss_pred HHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhccC
Q 038936 80 AQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR--YNQPIEALDLYRMMQNFEN 154 (476)
Q Consensus 80 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~ 154 (476)
|+++|+++.+ | ++..+..++..+...++.++|++.++++.+.++.....+..++.. .++..+|++.++++.. .
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~--~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR--L 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH--h
Confidence 9999999986 3 456777888999999999999999999988665543334444444 5666669999999986 2
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHH------HHHHHHHH-----HcCCC---HHHHHHHHHhh
Q 038936 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV------WSALSDMY-----GKCGS---INEARQIFDKM 220 (476)
Q Consensus 155 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~-----~~~~~---~~~a~~~~~~~ 220 (476)
.+.+...+..+..++.+.|-...|.++..+--.. +.+.... ...+++.- ....+ .+.|+.-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3345566678888888888888888776642211 1111111 11111110 01122 34455555555
Q ss_pred cc---cchh-------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 221 VD---RDVV-------SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 221 ~~---~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
.. +++. ...-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 33 2221 1224466788899999999999999998876566788899999999999999999999987653
Q ss_pred -----CCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-------------Ch---hhHHHHHHHHHhcCChHHHHH
Q 038936 291 -----YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-------------DL---VSWTSLIAGYAQNGMPDKALE 347 (476)
Q Consensus 291 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~~~~~~A~~ 347 (476)
.+++......|.-+|...+++++|..+++.+.+ | |+ ..+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333457789999999999999999998864 1 11 124456777899999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC
Q 038936 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK 426 (476)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 426 (476)
.++++.... +-|......+...+...|.+.+|.+.++.+... .|-+..+....+..+...|++.+|..+.+.+ ...
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999998864 457788888999999999999999999777643 3445667778899999999999999999876 344
Q ss_pred CcHHHHHH
Q 038936 427 PDKFLWAS 434 (476)
Q Consensus 427 p~~~~~~~ 434 (476)
|+......
T Consensus 515 Pe~~~~~~ 522 (822)
T PRK14574 515 PEDIPSQE 522 (822)
T ss_pred CCchhHHH
Confidence 54443333
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=4.4e-16 Score=142.96 Aligned_cols=182 Identities=16% Similarity=0.069 Sum_probs=129.2
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.-.|++++|.+++.++. +.++..|.+|...|-.+|+.+++...+-.+...+ +-|...|..+.......|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 344599999999999984 7788899999999999999999988877666654 346788999999999999999999
Q ss_pred HHHHHcccc---cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc----c----hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 82 TLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN----F----SWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 82 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
-.|.++.+. +...+-.-+..|-+.|+...|...|.++.+.++ . .-..+++.+...++-+.|++.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988763 334444557778888888888888877765433 1 12223455555566677777666666
Q ss_pred hccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 038936 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187 (476)
Q Consensus 151 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (476)
...+...+...++.++..+.+...++.+.........
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 5344455555666666666666666666555555444
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=147.59 Aligned_cols=440 Identities=12% Similarity=0.083 Sum_probs=306.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHccc--cc------chHHHHH
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC-LLDMYAKCGNISDAQTLFDEMQE--RD------VCSYNTM 98 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l 98 (476)
+...|.+.|....-..+|+..|+-..+...-|+...... +...+.+...+.+|++.|+.... |+ ....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 334455667777788899999999988877777655432 44667788899999999987764 22 2356666
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc------------hHHHH
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK------------FTLSS 164 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~ 164 (476)
...+++.|.++.|+..|+...+ |+..+-..|+-++.-.|+.++..+.|.+|.... ..||. ...+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip-~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP-GEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC-CCCCcccccCCcCCcchHHHHH
Confidence 6678899999999999998875 455554456666667899999999999998732 22222 22222
Q ss_pred HHH-----HHHhhhh--hhhHHHHHHHHHHcCCCchHH-------------HHH--------HHHHHHHcCCCHHHHHHH
Q 038936 165 VLS-----AVSAIQC--LRLGKEIHGYIMRTGFDSDEV-------------VWS--------ALSDMYGKCGSINEARQI 216 (476)
Q Consensus 165 ll~-----~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~ 216 (476)
.+. -..+.+. .+++.-.-..++.--+.|+.. .+. .-..-+.+.|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 1111111 111111111122111222210 000 112346788999999999
Q ss_pred HHhhcccchhhHHHH-----HHHHHh-cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 217 FDKMVDRDVVSWTAM-----IGRYFQ-EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 217 ~~~~~~~~~~~~~~l-----~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
+.-+.+.|..+-... +--|.+ ..++.+|.++-+..+... +-+......-.+.....|+++.|.+.+++.....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 988877665443222 122222 235666666655554332 2222222222223445789999999999998765
Q ss_pred CCCchhhHHHHHHHhhhcCChhhHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 038936 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMP---RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367 (476)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 367 (476)
-.-....| .+...+-..|++++|+++|-++. ..+..+...+...|-...++..|++++.+.... ++.|+..+..|
T Consensus 521 asc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 521 ASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred hHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 33333333 35556788999999999998776 367778888889999999999999999887664 56678889999
Q ss_pred HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHh-cCCh
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRI-HGNL 445 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~ 445 (476)
...|-+.|+-.+|.+++-.--. -+|-+.++...|+.-|....-+++|+..|+++ -+.|+..-|..++..|.+ .|++
T Consensus 599 ~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999998765553 46778899999999999999999999999997 578999999988877765 5999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 446 DLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 446 ~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.+|..+|+...+..|+|..++..|..+.
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 9999999999999999999999988764
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=5.8e-15 Score=124.48 Aligned_cols=415 Identities=16% Similarity=0.237 Sum_probs=225.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChH-HHHHHHHHcc---cccchHHHHH
Q 038936 25 SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK--CGNIS-DAQTLFDEMQ---ERDVCSYNTM 98 (476)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~-~A~~~~~~~~---~~~~~~~~~l 98 (476)
.+.+=|.+++ +..+|...++.-+|+.|.+.|++.+...-..|+..-+- ..++. .-++.|-.|. +.+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc---
Confidence 3344556665 45678999999999999999988887777776655332 22222 1122232332 1233334
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhH
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 178 (476)
+.|++.+ ++-+...+...++..+|.++++--..+.|.+++++... ...+.+..+||.+|.+.+-. ..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----cc
Confidence 2343332 33344444555666666666666666666666666655 55555666666665543322 22
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHH----Hhh----cccchhhHHHHHHHHHhcCChhH-HHHHHH
Q 038936 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF----DKM----VDRDVVSWTAMIGRYFQEGRREE-GFALFS 249 (476)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~ 249 (476)
.++..+|.+..+.||..|+|+++.+..+.|+++.|.+-+ .+| ++|...+|..++..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 555666666666666666666666666666555443333 223 33555566666666665555433 333333
Q ss_pred HHHHc----CC---CC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhC----CCCc---hhhHHHHHHHhhhcCChhhH
Q 038936 250 ELIKS----GI---RP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIG----YDPY---SFAASALVHMYSKCGNVENS 314 (476)
Q Consensus 250 ~~~~~----~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a 314 (476)
++... .+ .| |...|...|..|.+..+.+.|.++..-..... +.|+ ..-|..+..+.+.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 11 12 33345555566666666666666554433221 1222 12334455555566666666
Q ss_pred HHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC---------------
Q 038936 315 KKVFNGMPR----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG--------------- 375 (476)
Q Consensus 315 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------- 375 (476)
...|+.+.. |+..+...++++....|.++-.-++|..++..|...+......++..+++..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 666666553 5555555556666666666666666666655553333333333333333222
Q ss_pred -----chhhHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCCcHHHHHHHHHHHHhc
Q 038936 376 -----LVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-------PMKPDKFLWASLLGGCRIH 442 (476)
Q Consensus 376 -----~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 442 (476)
++.++.+ .-.++. ....+....+.++-.+.|.|..++|.++|.-+ +..|.....-.++..-...
T Consensus 498 ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 1111111 111222 22334445777888899999999999988765 2234434444666666777
Q ss_pred CChHHHHHHHHHHHHcC
Q 038936 443 GNLDLAKRAAEALFEIE 459 (476)
Q Consensus 443 g~~~~A~~~~~~~~~~~ 459 (476)
++..+|...++-+...+
T Consensus 575 ~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 88889998888886644
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=1.1e-13 Score=122.96 Aligned_cols=447 Identities=12% Similarity=0.101 Sum_probs=286.6
Q ss_pred CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 10 RLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 10 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+.++|.-++.++. +.+...|.++ .+...++.|..+++...+. ++.+..+|......-..+|+.+...++...
T Consensus 391 ~~~darilL~rAveccp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred ChHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3344444554443 3344444433 3344566777777776664 555666666666666667777766666655
Q ss_pred ccc--------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 87 MQE--------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ-----R-DNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 87 ~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
-.. -+...|-.-...|-+.|..-.+..+...... . --.+|..-...|.+.+.++-|..+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq- 544 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ- 544 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-
Confidence 331 2334455555555566666555555554432 1 234677777777778888888888877764
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWT 229 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 229 (476)
-.+-+...|......--..|..+....++++....- +-....+......+...|+...|..++....+. +...|-
T Consensus 545 -vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 545 -VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred -hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 233344556666666666777777778887777653 455556666677777788888888888877543 334576
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.-+..-..+.+++.|..+|.+.... .|+...|.--+..--..+..++|.+++++..+. ++.-...|..+.+.+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHH
Confidence 7777777888888888888877664 466666655555555677788888888777765 3555667777778888888
Q ss_pred ChhhHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 310 NVENSKKVFNGMPR--PD-LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 310 ~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
+.+.|...|..-.+ |+ +..|-.+...--+.|++-+|..++++..-.+ +-+...|...++.-.+.|..+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888777665 43 3466667777777778888888888887765 33566777777777888888888888887
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
+.++ .+.+...|..-+....+.++-..+.+.+++... |+.+...+...+....++++|.+.|.++++.+|++..+|
T Consensus 779 ALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 779 ALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 7764 344555555555555555555555555555442 333334444445555666666666666666666666665
Q ss_pred HHHHHh
Q 038936 467 VTMANI 472 (476)
Q Consensus 467 ~~l~~~ 472 (476)
..+...
T Consensus 855 a~fykf 860 (913)
T KOG0495|consen 855 AWFYKF 860 (913)
T ss_pred HHHHHH
Confidence 554433
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=5.3e-14 Score=120.31 Aligned_cols=445 Identities=14% Similarity=0.168 Sum_probs=336.4
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHH
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV-FISNCLLDMYAKCGNISDAQT 82 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 82 (476)
.++++..|..+|+.+. ..+...|...+..-.+...+..|..+++..+.. -|-+ ..|-..+.+--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567889999999985 677788888899999999999999999999885 3433 344445555557799999999
Q ss_pred HHHHcc--cccchHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC-C
Q 038936 83 LFDEMQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-S 157 (476)
Q Consensus 83 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 157 (476)
+|+... +|+...|.+.|..-.+.+.++.|..++++.. .|++.+|--....=.+.|+...|..+|......-+.. .
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 999987 4999999999999999999999999999976 6888999999999999999999999999887632221 1
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHcCCCHHHHHHHH--------Hhhccc---c
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD--EVVWSALSDMYGKCGSINEARQIF--------DKMVDR---D 224 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~---~ 224 (476)
+...+++....-.+...++.|.-+++..+.+- |.+ ...|......--+-|+........ +.+++. |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22234444444456778999999999988763 333 456666665555666654444332 333443 4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh--h---HH-HHHHHH----hccccHHHHHHHHHHHHHhCCCCc
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF--T---FA-GVLNAC----ADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~---~~-~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
..+|-..+..-...|+.+...++|++.+.. ++|-.. . |. ..|+.+ ....+.+.+.++++..++. +|..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 456777777777889999999999999875 455321 1 11 122221 2467899999999999885 5667
Q ss_pred hhhHHHHHHHh----hhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038936 295 SFAASALVHMY----SKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368 (476)
Q Consensus 295 ~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 368 (476)
..++..+--+| .++.++..|.+++..... |...++...|..-.+.++++.+..++++.++-+ +-|..+|....
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kya 478 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYA 478 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHH
Confidence 77777665554 477899999999988874 788889999999999999999999999999965 34667788777
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHH-----hc
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCR-----IH 442 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~ 442 (476)
..-...|+.+.|..+|.-++....+......|...+..=...|.++.|..+++++ ...+...+|-++..--. ..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQE 558 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccccc
Confidence 7778899999999999999876444445556777777778999999999999996 44455667776665433 22
Q ss_pred C-----------ChHHHHHHHHHHHH
Q 038936 443 G-----------NLDLAKRAAEALFE 457 (476)
Q Consensus 443 g-----------~~~~A~~~~~~~~~ 457 (476)
| ....|..+|+++..
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4 56788888888876
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=9e-14 Score=123.52 Aligned_cols=454 Identities=12% Similarity=0.090 Sum_probs=368.8
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCC
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHL----KSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+|.+..-|+.|..++..+. +.++..|.+-...--++|+.+...+++.+. ...|+..+...|..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 5677788899999988874 889999999888888999999998888764 456888888888888888888999
Q ss_pred hHHHHHHHHHccc------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHH
Q 038936 77 ISDAQTLFDEMQE------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYR 147 (476)
Q Consensus 77 ~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 147 (476)
.-.+..+...+.. .-..+|..-...|.+.+.++-|..+|....+- +...|......--..|..++...+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888887763 23468999999999999999999999988763 45567776666667899999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cch
Q 038936 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDV 225 (476)
Q Consensus 148 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 225 (476)
+... ..+-....+.....-.-..|+...|..++....+.. +.+..++..-+..-....++++|..+|.+... ++.
T Consensus 575 kav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 575 KAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 9985 344444555666666777899999999999998876 55788999999999999999999999998854 566
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA-FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
..|.--+..--..+..++|.+++++.++. -|+- ..|..+.+.+.+.++.+.|...|..-.+. +|..+..+-.|...
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakl 728 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKL 728 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHH
Confidence 67777777777789999999999998885 4554 45666667788899999999888766554 46667778888888
Q ss_pred hhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 305 YSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
--+.|.+-.|..++++..- .+...|-..|..-.+.|+.+.|..++.+.++. ++.+...|..-|...-+.++-....
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 8899999999999998763 46678999999999999999999999998875 4555667777777666666655555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
..++ ....|+++...++..+....++++|.+.|.+. ...|| ..+|..+...+.++|.-++-.+++.+...-+
T Consensus 808 DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 808 DALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 5543 23557778889999999999999999999996 55564 5688888899999999999999999999999
Q ss_pred CCCchhHHHHH
Q 038936 460 PENPATYVTMA 470 (476)
Q Consensus 460 p~~~~~~~~l~ 470 (476)
|.+...|-...
T Consensus 882 P~hG~~W~avS 892 (913)
T KOG0495|consen 882 PTHGELWQAVS 892 (913)
T ss_pred CCCCcHHHHHh
Confidence 99887776543
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-13 Score=114.91 Aligned_cols=357 Identities=13% Similarity=0.108 Sum_probs=221.0
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHH--HHHHHH
Q 038936 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL--SSVLSA 168 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~ll~~ 168 (476)
|...+-.....+.+.|....|.+.|......-+..|.+.+....-..+.+.+..+.. +.+.|..-. ..+..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~------~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV------GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh------cCcccchHHHHHHHHHH
Confidence 333333444445566777777777776665555555555444333333333322221 111111111 223345
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch------hhHHHHHHHHHhcCChh
Q 038936 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV------VSWTAMIGRYFQEGRRE 242 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 242 (476)
+......+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+.|+ .+|+..+ |+++.+..
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH
Confidence 555566777777777777777777776666666677777888888888888876544 3444433 33332221
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
+..+.+-.-.--+-.+.|.-.+.+.|+-.++.+.|...|+...+.+ +.....++.+.+-|....+...|...++.+.
T Consensus 315 --Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 --LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred --HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1222211111012334566667777777788888888888888776 5556677777788888888888888888776
Q ss_pred C---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhh
Q 038936 323 R---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399 (476)
Q Consensus 323 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 399 (476)
+ .|-..|-.++++|.-.+-+.-|+-.|++..... +.|+..|..|..+|.+.++.++|+..|.++..- -..+...
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~ 468 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSA 468 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHH
Confidence 5 355677778888888888888888888887742 335667888888888888888888888887753 3445567
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhC--------CCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 400 YACIVDLLARSGRFHEAEDVISKM--------PMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
+..|++.|.+.++.++|...+++. ...|... ....|..-+.+.+++++|..........+|.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 778888888888888888777663 1223222 2223444455667777777766666555443
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=9.2e-14 Score=125.82 Aligned_cols=252 Identities=12% Similarity=0.031 Sum_probs=179.6
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchh--hHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVV--SWT--AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
.....+.|+++.|...+.++.+.++. ... .....+...|+++.|...++++.+.. +-+......+...+.+.|++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH
Confidence 34446667777777777666442221 111 22456666677777777777766654 33455566666667777777
Q ss_pred HHHHHHHHHHHHhCCCCchh-------hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSF-------AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
+.+..++..+.+.+..++.. .+..++.......+.+...++++.+.+ .++.....+...+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777776665332221 222233333344455666777777753 57778888999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
+.+++..+. .|+.... ++.+....++.+++.+..++..++ .|.|+..+..++..+.+.|++++|.+.|+++ ..
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999884 4555322 334445669999999999999975 4566777889999999999999999999996 77
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.|+...+..+...+...|+.++|.++|++.+.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999998854
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.5e-14 Score=121.73 Aligned_cols=279 Identities=15% Similarity=0.134 Sum_probs=222.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV---SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
..+........+-+...+++.+..++.+.+.+.|+. .+..-|.++...|+..+-..+-.++.+.- |....+|-.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 345556666777888899999999999999776554 45555778899999999888888888864 66678888888
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD-LVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 344 (476)
-.|...|...+|.+.|.+....+ +.-...|-.+.+.|.-.|.-++|+..+..+.+ |. ...+--+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88888899999999999987765 44456788889999999999999988877664 22 2233335556888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL-----TYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+...+.-.- +.-..+++.|+.+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999988742 446667777777777889999999999988742111 11345688999999999999999999
Q ss_pred HhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 420 ISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 420 ~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
+++. ... .+..++.+++..|...|+++.|+..|.+++.+.|+|..+-..|..+
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9996 333 4888999999999999999999999999999999997776666543
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=4e-15 Score=132.50 Aligned_cols=281 Identities=14% Similarity=0.140 Sum_probs=223.6
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc------chhhHHHHHHHHHhcCChhHHHHH
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR------DVVSWTAMIGRYFQEGRREEGFAL 247 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 247 (476)
+.++|...|..+- ..+..+..+...+..+|...+++++|+++|+.+.+. +...|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4667777777733 334445577788999999999999999999999653 44566666544322 122233
Q ss_pred H-HHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCCh
Q 038936 248 F-SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326 (476)
Q Consensus 248 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (476)
+ +.+.+.. +-.+.+|-.+.++|.-+++.+.|++.|++..+.+ +....+|+.+.+-+....++|.|...|+.....|+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3333332 5677899999999999999999999999998875 45788999999999999999999999999999888
Q ss_pred hhHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 327 VSWTS---LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 327 ~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
..|++ ++..|.+.++++.|+-.|+++.+-+ +.+.+....+...+.+.|+.++|+++++++..- -+.++..-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 77666 5677999999999999999999965 235566777888889999999999999999853 24455566667
Q ss_pred HHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 404 VDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
+..+...++.++|...++++ ...| +...+..++..|.+.|+.+.|+..|--|.+++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88899999999999999998 3455 5567888889999999999999999999999997544
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.9e-13 Score=113.68 Aligned_cols=383 Identities=12% Similarity=0.067 Sum_probs=266.6
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcch-HHHHHHHHHhc
Q 038936 58 KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS-WTAMISGYVRY 136 (476)
Q Consensus 58 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~ 136 (476)
..|...+-.....+.+.|..+.|+..|......-+..|.+-+....-..+.+.+..+...+...+... ---+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 33443333334455567888899999888776555555555554444455666555555554432221 12233566666
Q ss_pred CChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCCHHHHH
Q 038936 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF--DSDEVVWSALSDMYGKCGSINEAR 214 (476)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 214 (476)
.+.++++.-...... .|.+-+...-+....+.....++++|+.+|+++.+... -.|..+|..++..-....++.---
T Consensus 241 ~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 778888887777775 45554544445555566788899999999999998742 135677777665443333322222
Q ss_pred HHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
...-.+-+--+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|...++...|++.++.+++.. |.|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 22223334456677888888999999999999999999875 3445677777778999999999999999999886 778
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (476)
-..|-.|.++|...+...-|+-.|++..+ .|+..|.+|..+|.+.++.++|++.|......| ..+...+..|.+.|
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLy 476 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLY 476 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 88899999999999999999999998874 578899999999999999999999999999876 34667889999999
Q ss_pred hccCchhhHHHHHHHHHHhc---CC-CC-ChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChH
Q 038936 372 THAGLVDKGLQYFHSIKEKH---GL-TY-TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~---~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 446 (476)
.+.++..+|.++|++.++.. |. .| ......-|+.-+.+.+++++|-...... +......+
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~---------------~~~~~e~e 541 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV---------------LKGETECE 541 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH---------------hcCCchHH
Confidence 99999999999999877632 11 22 2223333555667777777776544332 11133467
Q ss_pred HHHHHHHHHHHcC
Q 038936 447 LAKRAAEALFEIE 459 (476)
Q Consensus 447 ~A~~~~~~~~~~~ 459 (476)
+|..+++++.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777643
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.6e-14 Score=120.11 Aligned_cols=398 Identities=13% Similarity=0.160 Sum_probs=219.6
Q ss_pred hhhhcCCHHHHHHHHHhcC--CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 4 ILCNQRRLKEALQILHQIS--HPS------PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
.+.+.+++.+|+++++-.. .|+ ....+.+...+.+.|.++.|..-|+...+.. |+..+-..|+-++..-|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecC
Confidence 3556667777777766542 121 1233444445566777777777777666643 55444333444444556
Q ss_pred ChHHHHHHHHHccc----------------ccchHHH-----HHHHHHHhcC--CHHHHHHHHhcCC----CCCcc----
Q 038936 76 NISDAQTLFDEMQE----------------RDVCSYN-----TMISGFTKGG--SLEQARNLFDEMP----QRDNF---- 124 (476)
Q Consensus 76 ~~~~A~~~~~~~~~----------------~~~~~~~-----~l~~~~~~~g--~~~~a~~~~~~~~----~~~~~---- 124 (476)
+.++..+.|.++.. |+....+ -.+.-+-+.+ +.++++-.--++. .|+-.
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 66666666666642 1111111 1111121111 1222222222222 22100
Q ss_pred ---------hHHH--------HHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHH--hhhhhhhHHHHHHHH
Q 038936 125 ---------SWTA--------MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS--AIQCLRLGKEIHGYI 185 (476)
Q Consensus 125 ---------~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 185 (476)
.+.. -..-+.+.|+++.|+++++-+.. ...+.-...-+.+-.... .-.++..|.++-+..
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 0000 11235567777777777766654 222222222222221111 122455555555444
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 038936 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM---IGRYFQEGRREEGFALFSELIKSGIRPNAFT 262 (476)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (476)
+... ..+......-.+.....|++++|.+.+++....|...-..| .-.+-..|+.++|++.|-++..- +..+...
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 4322 22222222223334456777888888877777665443333 23455677778888777665432 2345556
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 339 (476)
...+.+.|....+...|++++.+.... ++.|+.+.+.|...|-+.|+-..|...+-.--+ -+..+..-|..-|...
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 666667777777777777777665544 466777777788888888877777766544332 3555666666667777
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-hccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 411 (476)
.-+++++.+|++..- +.|+..-|..++..| .+.|++++|.++|+.... .+|.+......|++.+...|
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 777788888877655 567777777776655 467788888888877775 35667777777777766655
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.1e-13 Score=118.82 Aligned_cols=413 Identities=14% Similarity=0.030 Sum_probs=257.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHccccc---chHHHHHHHHHHh
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERD---VCSYNTMISGFTK 104 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~ 104 (476)
+....+-|.+.|.+++|.++|.+.++. .|+ +..|.-...+|...|+|+++.+.-.+..+-+ +..+..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 444556788899999999999999985 467 7788888889999999999998888777633 3466777788888
Q ss_pred cCCHHHHHHH------HhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhH
Q 038936 105 GGSLEQARNL------FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178 (476)
Q Consensus 105 ~g~~~~a~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 178 (476)
.|++.+|+.= ++.+... ....++.-..+.--..++.+-+. ....++.|+.....+....+...-..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~---s~~~~~eR~Lkk~a~~ka~e~~k--~nr~p~lPS~~fi~syf~sF~~~~~~--- 267 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNA---SIEPMAERVLKKQAMKKAKEKLK--ENRPPVLPSATFIASYFGSFHADPKP--- 267 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCcHHHHHHHHhhccccccc---
Confidence 8888887642 1111111 11111111111111112222222 01244555555444444433211000
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhh-------ccc---c------hhhHHHHHHHHHhcCCh
Q 038936 179 KEIHGYIMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKM-------VDR---D------VVSWTAMIGRYFQEGRR 241 (476)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~-------~~~---~------~~~~~~l~~~~~~~~~~ 241 (476)
.+...+-..|...-..+-..+.. ...+..|...+.+- ... | ..+......-+.-.|+.
T Consensus 268 -----~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 268 -----LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred -----cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 00000000011000111111111 01223333322221 011 1 11111122233456888
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccC
Q 038936 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321 (476)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (476)
-.|..-|+..+.....++. .|..+...|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..-|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999988886533332 26667777888999999999999998887 778888888899999999999999999998
Q ss_pred CCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-----
Q 038936 322 PRPDL---VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL----- 393 (476)
Q Consensus 322 ~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 393 (476)
...++ ..|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+..++++++|.+.|+..++--..
T Consensus 421 i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 87443 34555555566788999999999999886 4555678888899999999999999999988853111
Q ss_pred -CCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 394 -TYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 394 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.+.+-+...++..-.+ +++..|..+++++ ...| ....+..++....+.|+.++|+++|++...+.-
T Consensus 500 v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1112222333333333 8899999999986 5666 345788888888899999999999999887654
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1e-13 Score=126.36 Aligned_cols=256 Identities=12% Similarity=0.001 Sum_probs=163.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhcc--cch--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVD--RDV--VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (476)
....+....|+++.|.+.+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-+......+...+...|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 334555555666666666655422 222 122223455555666666666666666553 334445555555666666
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHh---h----hcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMY---S----KCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 344 (476)
+++.+.+.+..+.+.+..+.......-..++ . .....+.....++...+ .++..+..+...+...|++++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 6666666666666654332221111111111 1 11223344445555543 477888888999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHH--H-HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 345 ALEYFELLLKSGTQPDHIV--F-VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
|.+.+++..+.. ||... + ..........++.+.+.+.+++..+..+..|+.....++++.+.+.|++++|.+.|+
T Consensus 282 A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 282 AQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999864 44432 1 112222344678889999999888753333322667899999999999999999999
Q ss_pred h---CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 422 K---MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 422 ~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
. ....|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 35679988888999999999999999999999876
No 41
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=5.3e-13 Score=112.89 Aligned_cols=247 Identities=19% Similarity=0.195 Sum_probs=131.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc----cccc
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ----ERDV 92 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~ 92 (476)
++-+..+..+.++..+|.++++-...+.|.++|++......+.+..++|.+|.+-.-.-+ .+++.+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 444445566777777777777777777777777777766666777777777765443322 44455544 3777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH----hcCC----CCCcchHHHHHHHHHhcCChhH-HHHHHHHHHh------ccCCCC
Q 038936 93 CSYNTMISGFTKGGSLEQARNLF----DEMP----QRDNFSWTAMISGYVRYNQPIE-ALDLYRMMQN------FENSVS 157 (476)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~ 157 (476)
.|+|+++++..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.+++.+ +..++.++.. .....|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 77777777777777766654432 2232 2445555555555555555432 2333333322 011122
Q ss_pred -CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHH
Q 038936 158 -NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG----FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232 (476)
Q Consensus 158 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 232 (476)
|...|...+..|.+..+.+.|.++...+.... ++|+.. ...-|..+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~ 405 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFF 405 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHH
Confidence 22334444555555555555555444332211 111110 001123334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 295 (476)
...|.....+.-..+|+.|.-.-+-|+..+...++++..-.+.++-.-+++..+...|.....
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 444555555555666666655555566666666666666666666666666666555543333
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.5e-12 Score=108.25 Aligned_cols=432 Identities=13% Similarity=0.148 Sum_probs=322.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccc-hHHHHHHHHHHhcCCH
Q 038936 32 LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDV-CSYNTMISGFTKGGSL 108 (476)
Q Consensus 32 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~ 108 (476)
..+--..++++..|..+|+.++.... .+...|...+..-.++..+..|..+++.... |-+ ..|--.+..--..|++
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Confidence 33334456788899999999998764 3777788888888889999999999998764 332 3455555556678999
Q ss_pred HHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 038936 109 EQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186 (476)
Q Consensus 109 ~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (476)
..|.++|++.. +|+...|++.|+.=.+.+.++.|..+++...- +.|+..+|......-.+.|....+..+++..+
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999876 48999999999999999999999999999876 67999999999999999999999999999887
Q ss_pred Hc-CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---c--hhhHHHHHHHHHhcCCh---hHHHH-----HHHHH
Q 038936 187 RT-GF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---D--VVSWTAMIGRYFQEGRR---EEGFA-----LFSEL 251 (476)
Q Consensus 187 ~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~l~~~~~~~~~~---~~a~~-----~~~~~ 251 (476)
+. |- ..+...+.+....-.++..++.|.-+|.-.++. + ...|..+..---+-|+. ++++- -++.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 64 21 223445666666666778888998888766442 1 22333333222233443 33332 24445
Q ss_pred HHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh-------hHHHH---HHHhhhcCChhhHHHHHccC
Q 038936 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF-------AASAL---VHMYSKCGNVENSKKVFNGM 321 (476)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~~~~~~a~~~~~~~ 321 (476)
++.+ +.|-.+|--.+..-...|+.+...++++..+.. +||-.. +|.-+ +-.-....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5544 556677777788888889999999999999876 355321 11111 11123567888999999877
Q ss_pred CC--CC-hh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCC
Q 038936 322 PR--PD-LV----SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394 (476)
Q Consensus 322 ~~--~~-~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 394 (476)
.+ |. .. .|-...+-..++.+...|.+++...+. .-|-..+|...|..-.+.+.++....+|++.++- .|
T Consensus 393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~P 468 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SP 468 (677)
T ss_pred HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Ch
Confidence 75 32 23 344445556788999999999988765 6788899999999889999999999999999963 35
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPD----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 395 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
-+-.+|...+..=...|+++.|..+|+-+-..|. ...|.+.+..-...|.+++|..+|++.++..+.-. .|.+.+
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHH
Confidence 5677888888888999999999999998755553 34677888777888999999999999999988544 777766
Q ss_pred Hhhh
Q 038936 471 NIYA 474 (476)
Q Consensus 471 ~~y~ 474 (476)
..-+
T Consensus 548 ~fe~ 551 (677)
T KOG1915|consen 548 KFEA 551 (677)
T ss_pred HHhc
Confidence 5433
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=5.1e-13 Score=123.23 Aligned_cols=347 Identities=10% Similarity=0.088 Sum_probs=193.0
Q ss_pred CCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 106 GSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
|++++|.+++.++.+. ....|..|...|-..|+.+++...+-.... -.+-|...|..+.....+.|++++|.-.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5555555555544432 233445555555555555555444433321 12222244444444444555555555555
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch----h----hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV----V----SWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
.+.++.. |++...+---+..|-+.|+...|...|.++...++ . .-...++.+...++.+.|.+.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5555443 33333333444455555555555555555533222 0 1111233444444445555544444331
Q ss_pred -CCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH---------------------------hCCCCchhh-HHHHHHHh
Q 038936 255 -GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR---------------------------IGYDPYSFA-ASALVHMY 305 (476)
Q Consensus 255 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------------~~~~~~~~~-~~~l~~~~ 305 (476)
+-..+...+++++..+.+...++.+......+.. .+.+++..+ ...+....
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1122333444444445555555555444444433 112233333 22222223
Q ss_pred hhcCChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 306 SKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
.+.++..+++..+.... ..++..|.-+..+|...|++.+|+.+|..+......-+...|..++.+|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 34444444444333222 23456788888999999999999999999988755556678888999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC-----------CCCcHHHHHHHHHHHHhcCChHHHHH
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-----------MKPDKFLWASLLGGCRIHGNLDLAKR 450 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (476)
+.|+.++.. .|.+...-..|...+.+.|+.++|.+.++.+. ..|+....-.....+...|+.++-+.
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999864 34556677788899999999999999998862 12344444455556777888888776
Q ss_pred HHHHHHH
Q 038936 451 AAEALFE 457 (476)
Q Consensus 451 ~~~~~~~ 457 (476)
....++.
T Consensus 548 t~~~Lv~ 554 (895)
T KOG2076|consen 548 TASTLVD 554 (895)
T ss_pred HHHHHHH
Confidence 6666654
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.2e-16 Score=138.27 Aligned_cols=251 Identities=17% Similarity=0.251 Sum_probs=100.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhh-cc----cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 038936 199 ALSDMYGKCGSINEARQIFDKM-VD----RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (476)
.+...+.+.|++++|+++++.. .. .++..|..+...+...++++.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 5688888999999999999543 22 244556666777778889999999999998765 2345566666665 688
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-----RPDLVSWTSLIAGYAQNGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (476)
+++++|..++....+. .+++..+..++..+...++++++..+++.+. .++...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776554 3556666777888888888888888887743 24666788888888888999999999
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC
Q 038936 349 FELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK 426 (476)
Q Consensus 349 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 426 (476)
+++.++.. | |......++..+...|+.+++.++++..... .+.++..+..++.+|...|+.++|...|++. ...
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 99888853 4 4666777888888888888888888888765 2556667788888888889999999888886 334
Q ss_pred C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 427 P-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 427 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
| |+.....++.++...|+.++|.++++++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 677778888888888999999888888765
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=8.3e-14 Score=126.12 Aligned_cols=247 Identities=11% Similarity=0.070 Sum_probs=163.5
Q ss_pred HhhhhhhhHHHHHHHHHHcCCCchHHHH--HHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHH
Q 038936 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVW--SALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEG 244 (476)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 244 (476)
.+.|+++.+.+.+.++.+. .|+.... ......+...|+++.|...++.+.+. ++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555433 3333222 23356677777888887777777542 344566677777777888888
Q ss_pred HHHHHHHHHcCCCCCHh-------hHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 245 FALFSELIKSGIRPNAF-------TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
..++..+.+.+..++.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888777765443221 2222233333334455555555555433 255677777888888888888888888
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh
Q 038936 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397 (476)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 397 (476)
+++..+.....--.++.+.+..++++++++..+...+.. +-|...+..+...|...+++++|.+.|+++.+ ..|+.
T Consensus 286 L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~ 361 (398)
T PRK10747 286 ILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDA 361 (398)
T ss_pred HHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCH
Confidence 877765222222233445556688888888888888763 33455677788888889999999999988885 37888
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 398 DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..+..+..++.+.|+.++|.+.+++.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888899999999998888764
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=5.1e-16 Score=134.40 Aligned_cols=253 Identities=15% Similarity=0.152 Sum_probs=81.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhcC
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSG-FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKGG 106 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g 106 (476)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|+..++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667777888888888886554433 2334455555556666777888888888877652 34456666666 6777
Q ss_pred CHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHH
Q 038936 107 SLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184 (476)
Q Consensus 107 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 184 (476)
++++|.++++..-+ +++..+...+..+.+.++++++.++++.+......+++...|..+...+.+.|+.+.|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888777766543 3555666777777778888888888877765333444555566666666666666666666666
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc---ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 038936 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV---DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 261 (476)
.++.. |.|..+...++..+...|+.+++..+++... ..|+..+..+..+|...|+.++|..+|++..+.. +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 66654 3345566666666666666666555555542 2345556666666666666666666666666543 34555
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHH
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYM 286 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~ 286 (476)
+...+..++...|+.+.|..+..++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5555566666666666666655544
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-12 Score=108.45 Aligned_cols=398 Identities=14% Similarity=0.025 Sum_probs=262.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHccccc-chHHHHHHHHHHhcCCHH-HHHHHHhcCCCCCcchHHHHHHHHHhcCChhH
Q 038936 64 SNCLLDMYAKCGNISDAQTLFDEMQERD-VCSYNTMISGFTKGGSLE-QARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141 (476)
Q Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (476)
-...+.+|...++-+.|...+.+..+.- ..-.+.++..+-+.|.-+ ++.--+......-+..... |.+..+.+ +..
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~-v~g 177 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG-VNG 177 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh-hcc
Confidence 3445667777788888888877766532 223333333333333221 1111111111111111111 11111111 000
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhh--hhhhhHHHHHHHHHH-cCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAI--QCLRLGKEIHGYIMR-TGFDSDEVVWSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
+..--..|.. -..+|...+....+.+++.. ++...+...+-.+.. .-++.|......+.+.+...|+.++|+..|+
T Consensus 178 ~e~~S~~m~~-~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 178 NEINSLVMHA-ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred hhhhhhhhhh-eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 1111111211 23455555555555555433 333333333333322 3467788899999999999999999999999
Q ss_pred hhcccchhhHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 038936 219 KMVDRDVVSWTA---MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295 (476)
Q Consensus 219 ~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 295 (476)
+...-|+.+... ..-.+.+.|+.++...+...+.... ..+...|..-...+...++++.|..+-++.++.+ +.+.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence 987666554333 3445567889998888888876542 2233333333444556788999999888887765 4455
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH-HHH
Q 038936 296 FAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL-TAC 371 (476)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~ 371 (476)
..+-.-..++...|+.++|.-.|+.... -+..+|..|+.+|...|++.+|...-+...+. ...+..++..+. .+|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 5555556778899999999999998764 36789999999999999999999988877664 345666776663 343
Q ss_pred h-ccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHH
Q 038936 372 T-HAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 372 ~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A 448 (476)
. ...--++|..++++... +.|+ ......+++.+...|+.++++.++++. ...||....+.++..+...+.+.+|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 3 34456789999988874 3554 456778899999999999999999995 7789999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHH
Q 038936 449 KRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
...|..++.++|+|..+...|-
T Consensus 491 m~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHhcCccchHHHHHHH
Confidence 9999999999999988776553
No 48
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.6e-11 Score=108.34 Aligned_cols=432 Identities=15% Similarity=0.134 Sum_probs=263.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccc--hHHHHHHHHHHhc
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV--CSYNTMISGFTKG 105 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~ 105 (476)
...+=++.+...|++++|.....+++..+ +.+...+.+-+-++++.+++++|+.+.+.-..... .-+-.-+.+..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 34444566778889999999999998876 44566677777788889999999976665332111 1111223344578
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHH
Q 038936 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 185 (476)
+..++|...++-....+..+...-...+.+.|++++|+++|+.+.++....-+...-..++.+.... .+. .+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HH
Confidence 9999999999966555666777777888999999999999999975222222222222222221111 010 11
Q ss_pred HHcCCCc--hHHHHHHHHHHHHcCCCHHHHHHHHHhhc--------ccch----------hhHHHHHHHHHhcCChhHHH
Q 038936 186 MRTGFDS--DEVVWSALSDMYGKCGSINEARQIFDKMV--------DRDV----------VSWTAMIGRYFQEGRREEGF 245 (476)
Q Consensus 186 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~a~ 245 (476)
......| +-..+-.....+...|++.+|+++++... +.|. .....|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1112222 12222234556678899999999998872 1111 12334556777899999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHH---HhccccH-H-------------HHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 246 ALFSELIKSGIRPNAFTFAGVLNA---CADHAAE-E-------------LGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~-~-------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
.++...++.. ++|........+- +....++ + -+......+.... ......-+.++.+| .
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH--h
Confidence 9999999876 4555333322221 1111111 1 1111111111110 11111112233333 3
Q ss_pred CChhhHHHHHccCCCCC-hhhHHHHHH-HH-HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHH
Q 038936 309 GNVENSKKVFNGMPRPD-LVSWTSLIA-GY-AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~~~-~~~~~~l~~-~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
+..+.+.++-....... ...+.+++. +. ++...+..+.+++...-+....-.......++......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44566666666665422 233344443 32 2333578888888888775433234455556677789999999999998
Q ss_pred --------HHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--------CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 386 --------SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--------PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 386 --------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
.+.+ +...+.+...+...+.+.++.+.|..++.++ ...+ -..++..++..-.++|+-++|
T Consensus 401 ~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 4442 3444556777888899999888888887765 1222 223455555555677999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 449 KRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
..+++++++.+|++..+...|..+|+.
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 999999999999999999999988864
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.5e-14 Score=127.57 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT---AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (476)
...+|+.+..-+.....+|.|...|+..+..|+..|+ .+...|.+.++++.|.-.|++..+-+ +-+.+....+...
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRI 532 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHH
Confidence 4556666666666666666666666666655554433 34556666666666666666666543 2233344444444
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
+.+.|+.|+|+++++++...+ +. |+..--..+..+...+++++|+..+
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld-~k-------------------------------n~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLD-PK-------------------------------NPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcC-CC-------------------------------CchhHHHHHHHHHhhcchHHHHHHH
Confidence 555555555555555555443 22 2222222333444445555555555
Q ss_pred HHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 350 ELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 350 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+++++ +.|+. ..|..+...|-+.|+.+.|+..|.-+.
T Consensus 581 EeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 581 EELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 55555 22322 334444455555555555555554444
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=3.7e-13 Score=122.65 Aligned_cols=284 Identities=12% Similarity=0.009 Sum_probs=182.8
Q ss_pred hcCChhHHHHHHHHHHhccCCCCCch-HHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHH
Q 038936 135 RYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213 (476)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 213 (476)
..|+++.|.+.+.+..+ ..|+.. .+.....+....|+.+.+.+.+....+....+...+.......+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35666666666655443 223322 22333344455566666666666655433122222333457777788888888
Q ss_pred HHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH---HhccccHHHHHHHHHHHH
Q 038936 214 RQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA---CADHAAEELGKQVHGYMT 287 (476)
Q Consensus 214 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 287 (476)
...++.+.+. ++.....+...+...|++++|.+.+..+.+.++.++......-..+ ....+..+.+...+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888542 4456777788888888888888888888887643332221111111 122233333334444444
Q ss_pred HhC---CCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 288 RIG---YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVS---WTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359 (476)
Q Consensus 288 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 359 (476)
+.. .+.++..+..+...+...|+.++|.+.+++..+ |+... ...........++.+.+.+.+++..+.. +-
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 432 124777888888899999999999999988875 44332 1222223445678888999998888753 22
Q ss_pred cH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 360 DH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 360 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
|+ ....++...+.+.|++++|.+.|+..... ...|+...+..++..+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 45668889999999999999999953322 45788888889999999999999999999874
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=8.6e-13 Score=107.56 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh-------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVV-------SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (476)
..+..+|.+.|-+.|..|.|+++-+.+.+.... ....|..-|...|-+|.|+.+|..+.+.| ..-......+
T Consensus 69 ~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqL 147 (389)
T COG2956 69 FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQL 147 (389)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHH
Confidence 344445556666666666666666555432211 22334455666666666666666665543 2233455556
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCch----hhHHHHHHHhhhcCChhhHHHHHccCCCCC---hhhHHHHHHHHHhc
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPYS----FAASALVHMYSKCGNVENSKKVFNGMPRPD---LVSWTSLIAGYAQN 339 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~ 339 (476)
+..|-...+|++|+.+-+++.+.+-.+.. ..|.-+...+....+.+.|...+.+..+.| +..--.+...+...
T Consensus 148 l~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 148 LNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc
Confidence 66666666666666666666655433321 234445555556667777777777776533 33444566778889
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++..|++.++...+.+..--+.+...|..+|...|+.++...++.++.+. .+....-..+.+......-.+.|...
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHH
Confidence 999999999999888765545567788888899999999999999888864 44454555565555555555666655
Q ss_pred Hh-hCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 038936 420 IS-KMPMKPDKFLWASLLGGCRIH---GNLDLAKRAAEALFE 457 (476)
Q Consensus 420 ~~-~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 457 (476)
+. .+..+|+...+..++...... |..++....++.++.
T Consensus 305 l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 305 LTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 54 467789988888888765533 556777777777765
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1e-12 Score=112.97 Aligned_cols=388 Identities=11% Similarity=0.051 Sum_probs=240.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHccc--cc-chHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCCh
Q 038936 66 CLLDMYAKCGNISDAQTLFDEMQE--RD-VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS---WTAMISGYVRYNQP 139 (476)
Q Consensus 66 ~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 139 (476)
....-|.+.|++++|++.|.+..+ |+ +..|.....+|...|+|+++.+--.+..+-++.- +.--..++-..|++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 344556688899999999998875 66 7788888999999999999888877777655543 33344566677777
Q ss_pred hHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHH-cC--CCchHHHHHHHHHHHHcCCCHHHHHHH
Q 038936 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR-TG--FDSDEVVWSALSDMYGKCGSINEARQI 216 (476)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 216 (476)
.+|+.=..-..- .+...+..+--.+=+.+- ..+....++-.+ .+ +-|+.....+....+... +.
T Consensus 200 ~eal~D~tv~ci-~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~----- 266 (606)
T KOG0547|consen 200 DEALFDVTVLCI-LEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK----- 266 (606)
T ss_pred HHHHHhhhHHHH-hhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc-----
Confidence 777653332221 111111111111111111 112222222222 22 123332222222221100 00
Q ss_pred HHhhcccchhhHHHHHHHHH----h-cCChhHHHHHHHHHHHcC-CCC-----CHh----hHHHHHH--HHhccccHHHH
Q 038936 217 FDKMVDRDVVSWTAMIGRYF----Q-EGRREEGFALFSELIKSG-IRP-----NAF----TFAGVLN--ACADHAAEELG 279 (476)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~~-~~~-----~~~----~~~~l~~--~~~~~~~~~~a 279 (476)
..+..+.....-.+..++. . ...+..|...+.+-.... ..+ |.. .-..++. .+.-.|+.-.+
T Consensus 267 -~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 267 -PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred -ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 0000001111111111111 1 112344444333321110 011 111 1111121 23346788888
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
..-++..+..... +...|-.+..+|....+.++....|+...+ .++.+|..-.+.+.-.+++++|..-|++.++.
T Consensus 346 ~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L- 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL- 423 (606)
T ss_pred hhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 8888888887533 333366777889999999999999998875 46778999999999999999999999999985
Q ss_pred CCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc------
Q 038936 357 TQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD------ 428 (476)
Q Consensus 357 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------ 428 (476)
.| +...|..+..+..+.+.++++...|++...+ +|..+++|+..+.++..++++++|.+.|+.+ ...|+
T Consensus 424 -~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 424 -DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred -ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 45 4456777777778999999999999999985 6777888999999999999999999999985 44443
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 429 ---KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 429 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+.+...++..- -.+++..|+.+++++++++|....++..|+.+-
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 22333333222 338999999999999999999999999999764
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=7.6e-12 Score=105.29 Aligned_cols=286 Identities=14% Similarity=0.071 Sum_probs=182.8
Q ss_pred cCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 038936 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 215 (476)
.|+|.+|+++...-.+ . ..-....|..-..+.-..|+.+.+-.++.+..+..-.++........+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae-~-~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAE-H-GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhh-c-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4666666666655443 1 1112223334444444555555555555555444323444444444555555555555555
Q ss_pred HHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 216 IFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 216 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
-++++.+ .++........+|.+.|++.....++..+.+.|.-.++..-.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 5444422 233344444555555555555555555555554332221100
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMP---RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 369 (476)
.-..++..+++-....+..+.-...++..+ +.++..-..++.-+.+.|+.++|.++.++..+++..|+... .-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HH
Confidence 001233444444444444555555666665 35677777888889999999999999999999887776222 23
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A 448 (476)
.+.+.++...-++..++....++..| ..+..|+..|.+.+.|.+|.+.|+.. +..|+...|..+..++...|+..+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 46778888888888888887655544 67999999999999999999999985 7889999999999999999999999
Q ss_pred HHHHHHHHH
Q 038936 449 KRAAEALFE 457 (476)
Q Consensus 449 ~~~~~~~~~ 457 (476)
.+..++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 999999886
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.6e-11 Score=107.84 Aligned_cols=437 Identities=12% Similarity=0.056 Sum_probs=287.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH--cccccchHHHHHHHH
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE--MQERDVCSYNTMISG 101 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~ 101 (476)
.+..-+..+.+-+..+.++..|.-+-++....+. |+...--+++++.-.|++.+|..+... +.+.|..+.......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 3455566677777777888888888887776653 444444567788888888888877665 345677777888888
Q ss_pred HHhcCCHHHHHHHHhcCCC---------CC--------cch----HHHHH-------HHHHhcCChhHHHHHHHHHHhcc
Q 038936 102 FTKGGSLEQARNLFDEMPQ---------RD--------NFS----WTAMI-------SGYVRYNQPIEALDLYRMMQNFE 153 (476)
Q Consensus 102 ~~~~g~~~~a~~~~~~~~~---------~~--------~~~----~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~ 153 (476)
+.+..++++|..++.+... .+ ... -+.-. ..|....+.++|...|.+...
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~-- 169 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL-- 169 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--
Confidence 8888999999888884321 01 000 11111 223333445555555555442
Q ss_pred CCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCC----CchHHHHHHHHHHHHcCCCHHHHHHHH--Hhh--cccch
Q 038936 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF----DSDEVVWSALSDMYGKCGSINEARQIF--DKM--VDRDV 225 (476)
Q Consensus 154 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~--~~~~~ 225 (476)
.|...+..+...... ..-.+.+.++.+..... ..+......+.....-...-+.....- +.+ .+.++
T Consensus 170 ---~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 170 ---ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred ---cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 222222222111110 01111111111111100 011111111111110000000000000 000 11234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+++. .|..+.+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 444455667778899999999999998875 566666666677888888887777777777776 377788899999999
Q ss_pred hhcCChhhHHHHHccCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 306 SKCGNVENSKKVFNGMPRPDL---VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
...|+.++|++.|.+...-|. ..|-.+..+|.-.|..+.|+..+...-+.- +-....+..+..-|.+.+....|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999999999999886443 479999999999999999999998887642 2222233345666888999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC--------CCC-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP--------MKP-DKFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
+|.++... .|.|+.+.+-++......+.+.+|...|+... .++ -.++++.++.++.+.+.+++|+..++
T Consensus 402 Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99999853 35567778888888889999999999998751 112 34578999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHhhh
Q 038936 454 ALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 454 ~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+++.+.|.++.+|..+|.+|.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHH
Confidence 999999999999999999985
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=2e-11 Score=102.86 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=185.8
Q ss_pred hcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHH
Q 038936 104 KGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180 (476)
Q Consensus 104 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 180 (476)
..|+|..|+++..+-.+. ....|..-..+--+.|+.+.+-.++.+..+ ....++...+.+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 479999999999886553 233455555777789999999999999986 4345566667777888899999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch-----------hhHHHHHHHHHhcCChhHHHHHHH
Q 038936 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-----------VSWTAMIGRYFQEGRREEGFALFS 249 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 249 (476)
-...+.+.+ +.++.+......+|.+.|++.....++..+.+... .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998887 56677888999999999999999999999976432 245556655555555555555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC---CCCh
Q 038936 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP---RPDL 326 (476)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~ 326 (476)
..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|... ..-...+-++.+.-++..++.. ..++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 54433 34555566666777777888888888888877776666511 1112233333333333333222 2334
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5555666666666666666666665555 34666666666666666666666666665555
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.9e-11 Score=98.83 Aligned_cols=262 Identities=10% Similarity=0.115 Sum_probs=156.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-ccc------hHHHHHHHHHHhcCCHHH
Q 038936 38 QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-RDV------CSYNTMISGFTKGGSLEQ 110 (476)
Q Consensus 38 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~ 110 (476)
-.+++++|.+.|-+|.+.. +-+.++..+|.+.|-+.|..+.|+++-+.+.+ ||. .....|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467788888888887754 22556667777888888888888888877664 443 233455666777888888
Q ss_pred HHHHHhcCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHhhhhhhhHHHHHHH
Q 038936 111 ARNLFDEMPQRD---NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK---FTLSSVLSAVSAIQCLRLGKEIHGY 184 (476)
Q Consensus 111 a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 184 (476)
|+.+|..+.+.+ ......|+..|-...+|++|++.-+++....+.+-+. ..|.-+...+....+++.|...++.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888777633 3345667777888888888888877776622222221 2344455555555666666666666
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 038936 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV----SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 260 (476)
..+.+ +.....-..+.+.....|+++.|++.++.+.+.|+. +...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 66554 334444455666666777777777777776665543 34555666667777776666666666543 222
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
..-..+........-.+.|..++.+-.+. .|+...+..++...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 22222222222333334444443333332 45555555555443
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=4.8e-10 Score=102.34 Aligned_cols=426 Identities=13% Similarity=0.055 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc----c-cchHHHHH
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE----R-DVCSYNTM 98 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~l 98 (476)
.++..|..+.-++.+.|+++.+-+.|++....-+ ...+.|..+...|...|.-..|..+++.... | ++..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 4555555555555566666666666666554322 2445555555556666666666666655432 1 12222222
Q ss_pred HHHHH-hcCCHHHHHHHHhcCCC--------CCcchHHHHHHHHHh-----------cCChhHHHHHHHHHHhccCCCCC
Q 038936 99 ISGFT-KGGSLEQARNLFDEMPQ--------RDNFSWTAMISGYVR-----------YNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 99 ~~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
-..|. +.+..++++..-.++.. ..+..|..+.-+|.. .....++++.+++..+..+..|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 22222 23444444433333221 123334333333321 11233455555555544444443
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHH---HHHH
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM---IGRY 235 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~ 235 (476)
...|..+ -++..++.+.|.+..++.++.+-..+...|..+.-.+...+++.+|+.+.+...+.....++.+ +..-
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 3333222 3344555666666666665554445555555555555566666666666655543222222111 2222
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh--CCCCchhhHHHHHHHhhhcC---C
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCG---N 310 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~ 310 (476)
..-++.++++.....+... --+.... ...++-....+....+.-. .......++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 2344445544444443321 0000000 0001100111111111000 00111222222222221111 1
Q ss_pred hhhHHHHHccCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 311 VENSKKVFNGMPRPDL------VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 311 ~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.+..+..+.....|+. ..|......+.+.++.++|...+.+..... +.....|......+...|...+|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1111111111122332 245566777889999999998888887752 345566776777888899999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH--HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAED--VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
..+..- -|.++....+++.++.+.|+..-|.. ++..+ ...| ++..|..++..+...|+.++|.+.|..++++++
T Consensus 708 ~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 708 LVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 988852 23456778999999999998877777 77775 5555 788999999999999999999999999999999
Q ss_pred CCch
Q 038936 461 ENPA 464 (476)
Q Consensus 461 ~~~~ 464 (476)
.+|.
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 8875
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=2.7e-09 Score=95.58 Aligned_cols=378 Identities=15% Similarity=0.215 Sum_probs=226.6
Q ss_pred hhhhhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038936 3 DILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 77 (476)
+.+.++|+.......|+.+. ......|...+.-....+-++-+.++|+..++.. | ..-.-.+..++..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccch
Confidence 34567777777777777763 3344567777777777788888888888887742 2 3355667777788888
Q ss_pred HHHHHHHHHccc--------------------------c--------------------c--chHHHHHHHHHHhcCCHH
Q 038936 78 SDAQTLFDEMQE--------------------------R--------------------D--VCSYNTMISGFTKGGSLE 109 (476)
Q Consensus 78 ~~A~~~~~~~~~--------------------------~--------------------~--~~~~~~l~~~~~~~g~~~ 109 (476)
++|-+.+..+.. | | ...|++|.+.|++.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 888877776652 0 1 124777777788888888
Q ss_pred HHHHHHhcCCCC--CcchHHHHHHHHHhc----------------C------ChhHHHHHHHHHHhccCC----------
Q 038936 110 QARNLFDEMPQR--DNFSWTAMISGYVRY----------------N------QPIEALDLYRMMQNFENS---------- 155 (476)
Q Consensus 110 ~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~~~---------- 155 (476)
+|..+|++.... .+.-+..+-++|+.. | +++-.+.-|+.+....+.
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 888888776653 222233333333221 1 112222333333321111
Q ss_pred CCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCc------hHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh---
Q 038936 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV--- 226 (476)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 226 (476)
+-+..++..-.. ...|+..+....+.++++.- .| -...|..+.+.|-..|+++.|..+|++..+-+..
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 111122222111 12344455555566655431 22 1345778888999999999999999998764433
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----------------CHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 227 ----SWTAMIGRYFQEGRREEGFALFSELIKSGIRP-----------------NAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 227 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
+|......-.+..+++.|+++.+......-.| +...|...+..-...|-++....+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444455556778888888887765422111 112344444444566788888889999
Q ss_pred HHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----CCh-hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCC
Q 038936 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----PDL-VSWTSLIAGYAQ---NGMPDKALEYFELLLKSGT 357 (476)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 357 (476)
+.+..+.. +.+.-.....+-.+.-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|++.++ |.
T Consensus 503 iidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 88876433 22222333344556668889999988774 554 367766655543 2467899999999998 67
Q ss_pred CCcHHHHHHHHHH--HhccCchhhHHHHHHHHHH
Q 038936 358 QPDHIVFVGVLTA--CTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 358 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 389 (476)
+|...-+..|+.+ -.+.|....|+.+++++..
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7665433333332 2345777778888777654
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.6e-11 Score=101.53 Aligned_cols=416 Identities=11% Similarity=0.096 Sum_probs=201.7
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSS-LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 78 (476)
.-+..++++..|+.+++... .......+. +..++.+.|++++|...|+.+.... .|+...+..|...+.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 44677889999999998764 111112232 4456678999999999999887754 556677777777777789999
Q ss_pred HHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 79 DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 79 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
+|..+-....+ ++..-..+...-.+.|+-++-..+-+.+.... .--.++.......-.+.+|++++..... ..|+
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~e 183 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPE 183 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChh
Confidence 99988777543 12222233333334444333333333332211 1111222233333344455555554443 1222
Q ss_pred chHHHHHHH-HHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--C---------------------------
Q 038936 159 KFTLSSVLS-AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--G--------------------------- 208 (476)
Q Consensus 159 ~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--------------------------- 208 (476)
-...+.-+. ++.+..-++.+.++++-.++. ++.+....|.......+. |
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 222222222 223334444444444433322 122222222222211111 1
Q ss_pred ------CHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH-----HhccccHH
Q 038936 209 ------SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA-----CADHAAEE 277 (476)
Q Consensus 209 ------~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~ 277 (476)
+-+.|++++-.+.+.=+...-.|+--|.++++..+|..+.+++.. ..|-......+..+ ........
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 112233333222222223333444456667777777766655421 12222222222211 11122344
Q ss_pred HHHHHHHHHHHhCCCCchh-hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 278 LGKQVHGYMTRIGYDPYSF-AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
.|.+.|+..-+.+..-|.. ---++...+.-..++++++..++.+.. .|...--.+.++++..|++.+|+++|-...
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 5556665555544333221 222344444455566666666666553 222222235667777777777777776655
Q ss_pred HcCCCCcHHHH-HHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 354 KSGTQPDHIVF-VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-DHYACIVDLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 354 ~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
...++ |..+| ..+.++|.+.+.++.|++++-++- .+.+. .....++.-|.+++.+=-|-+.|+.+ ...|++.
T Consensus 421 ~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 421 GPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred Chhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 43333 33333 344556677777777766553322 11122 22334455566667666666666655 3445554
Q ss_pred HH
Q 038936 431 LW 432 (476)
Q Consensus 431 ~~ 432 (476)
.|
T Consensus 496 nW 497 (557)
T KOG3785|consen 496 NW 497 (557)
T ss_pred cc
Confidence 44
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=106.45 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=192.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
+.+.++|.+.|-+.+|.+.++..++. .|-..||..+-..|.+..+++.|..++.+-.+. .|-+........+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999998888775 566778888888999999999999998887765 244444455667888888
Q ss_pred CChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHH
Q 038936 309 GNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
++.++|.++++...+ .++...-.+...|.-.++++-|+.++++++..|+ -++..|..+.-+|...+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998876 3445555666778889999999999999999996 477889999999999999999999999
Q ss_pred HHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 386 SIKEKHGLTY--TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 386 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
++... --.| -.++|..++......|++.-|.+.|+-. ...| +...++.+.-.-.+.|+.++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98864 2233 3567999999999999999999999986 3344 5568899988888999999999999999999997
Q ss_pred CchhHHHH
Q 038936 462 NPATYVTM 469 (476)
Q Consensus 462 ~~~~~~~l 469 (476)
-.....+|
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 55444444
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=1.3e-09 Score=99.61 Aligned_cols=379 Identities=13% Similarity=0.085 Sum_probs=248.5
Q ss_pred ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHH
Q 038936 90 RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166 (476)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 166 (476)
.++..|..+.-++.+.|+++.+.+.|++...- ....|+.+...+.-.|.-..|..+++.-......+++...+....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 46778888888899999999999999987653 455788888888889999999999888775333344445555555
Q ss_pred HHHH-hhhhhhhHHHHHHHHHHc--CC--CchHHHHHHHHHHHHcCC-----------CHHHHHHHHHhhccc---chhh
Q 038936 167 SAVS-AIQCLRLGKEIHGYIMRT--GF--DSDEVVWSALSDMYGKCG-----------SINEARQIFDKMVDR---DVVS 227 (476)
Q Consensus 167 ~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~---~~~~ 227 (476)
..|. +.+.++++..+-.+++.. +. ......|..+.-+|...- ...++++.+++..+. |+..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 5553 456677777776666652 11 123344555554444321 245677778877543 3434
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
...+.--|...++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+.....- +.|-.....-++.-..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhh
Confidence 344455677788999999999999998667888899999999999999999999988765541 1111111111222222
Q ss_pred cCChhhHHHHHccCCC--------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 308 CGNVENSKKVFNGMPR--------------------------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
.++.+++......+.. ..+.++..+..-....+ +.+..-.. +...
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s 636 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSS 636 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcc
Confidence 3444444433222110 01112222211111110 00000000 1111
Q ss_pred CCC--CcH------HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC
Q 038936 356 GTQ--PDH------IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK 426 (476)
Q Consensus 356 ~~~--~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 426 (476)
.+. |+. ..|......+.+.+..++|.-++.++.. ..+.....|+..+..+...|++++|.+.|..+ ...
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 112 221 2344556677888999999988888875 34556777888889999999999999999885 566
Q ss_pred C-cHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCchhHHHHHHhhh
Q 038936 427 P-DKFLWASLLGGCRIHGNLDLAKR--AAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 427 p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
| ++....+++..+...|+..-|.. ++..+++++|.|+.+|..||.++-
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 6 45688999999999999888888 999999999999999999998864
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.7e-09 Score=89.86 Aligned_cols=409 Identities=11% Similarity=0.107 Sum_probs=254.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHHHHHhcCCHH
Q 038936 33 IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMISGFTKGGSLE 109 (476)
Q Consensus 33 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 109 (476)
+.-+...+++..|..+++.-...+-+-...+-.-+..++.+.|++++|...+..+.+ ++...+..|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 556677889999999999877655433333444455677799999999999998775 55677888888888889999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 038936 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189 (476)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (476)
+|..+-.+..+ ++..-..+...-.+.++-++-..+-..+.. ....-..+.......-.+.+|.+++...+..+
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999887653 333444555666677887777666555543 22344556666667778999999999988664
Q ss_pred CCchHHHHHH-HHHHHHcCCCHHHHHHHHHhhcc--cc-hhhHHHHHHHHHhc--CCh----------------------
Q 038936 190 FDSDEVVWSA-LSDMYGKCGSINEARQIFDKMVD--RD-VVSWTAMIGRYFQE--GRR---------------------- 241 (476)
Q Consensus 190 ~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~--~~~---------------------- 241 (476)
|+-...|. +.-+|.+..-++-+.+++..-.. || +...|.......+. |+.
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 33333332 34566677777777777665533 22 22333332222221 111
Q ss_pred -----------hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc--
Q 038936 242 -----------EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-- 308 (476)
Q Consensus 242 -----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 308 (476)
+.|++++-.+.+. .|. .-..++-.+.+.+++.+|..+.+++. |.++.-|-.-.-.+...
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhh
Confidence 1222222222110 111 11223334667778888777766543 22222222111222222
Q ss_pred -----CChhhHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchh
Q 038936 309 -----GNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 309 -----~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (476)
....-|...|+-.-. .+..--..+...+.-..++++.+..+.....--...|...| .+..+.+..|.+.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChH
Confidence 234445555554432 22223344555555666788888888777765333333344 4788899999999
Q ss_pred hHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChhhHHHHHhhCCCCCcHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADHY-ACIVDLLARSGRFHEAEDVISKMPMKPDKFLW-ASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
+|.++|-++... .+ .+..+| ..|+++|.++++.+-|++++-++..+.+..+. ..+..-|.+.+++=-|-+.|+.+.
T Consensus 411 eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 411 EAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999777632 22 344455 45788999999999999999998755555544 445566778899989999999988
Q ss_pred HcCCC
Q 038936 457 EIEPE 461 (476)
Q Consensus 457 ~~~p~ 461 (476)
.++|.
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 88884
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=4.3e-11 Score=101.35 Aligned_cols=200 Identities=12% Similarity=0.103 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555555566666666666666555432 2223334444444444455555555544444332 1
Q ss_pred hhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHH
Q 038936 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.+...+..+...+...|++++|...+++..+....| ....+..+..++...|++++|.+.+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223345556666677777777777777776542212 2345555667777788888888888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM-KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
++.... .+.+...+..++..+...|++++|.+.++++ .. +++...+..++..+...|+.++|....+.+.+..|
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 877754 2334556777778888888888888887775 22 23445555666667777888888888777766544
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=5.7e-08 Score=87.34 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHh
Q 038936 26 PSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104 (476)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (476)
+..|-..++.+..+|+.......|+..+.. -+......|...+......|-++-+..+++...+-++..-...+..++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345556666667777777777777776654 2223345666666666677777777888877777666667777777778
Q ss_pred cCCHHHHHHHHhcCC
Q 038936 105 GGSLEQARNLFDEMP 119 (476)
Q Consensus 105 ~g~~~~a~~~~~~~~ 119 (476)
.+++++|.+.+..+.
T Consensus 182 ~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVL 196 (835)
T ss_pred ccchHHHHHHHHHhc
Confidence 888888777777665
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=6.6e-11 Score=112.20 Aligned_cols=143 Identities=13% Similarity=0.010 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELL 352 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 352 (476)
.++|...++++.+.+ +.+...+..+..++...|++++|...|+++.+ | +...+..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444555555444443 33344444444444455555555555554442 2 1233444444455555555555555555
Q ss_pred HHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 353 LKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 353 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.+.+ |+. ..+..++..+...|++++|+..++++... .+| ++..+..++.++...|+.++|...+.++
T Consensus 399 l~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 399 LKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4432 221 11122222333344555555555544432 112 2223444444455555555555555443
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.1e-10 Score=98.78 Aligned_cols=197 Identities=14% Similarity=0.083 Sum_probs=128.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
......+..+...+...|++++|...+++..+. +...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 344677888999999999999999999988543 35567888899999999999999999998865 44556677777
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
..+...|+++.|...++...+.... ..... +..+...+...|++++|.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARS-------------------------------LENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHH-------------------------------HHHHHHHHHHcCCHHHHH
Confidence 7888889999999988887764211 11222 333444455555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
..+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..++..+...|+.++|..+.+.
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 156 KYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555432 122334445555555556666666655555543 233344444455555555555555555444
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=6.2e-11 Score=112.40 Aligned_cols=244 Identities=10% Similarity=-0.013 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHhhcccch---hhHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc
Q 038936 208 GSINEARQIFDKMVDRDV---VSWTAMIGRYF---------QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275 (476)
Q Consensus 208 ~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (476)
+++++|...|++..+.++ ..|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 356788899988866433 34555554443 2344789999999998875 4466677777777888999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChh-hHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLV-SWTSLIAGYAQNGMPDKALEYFELL 352 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 352 (476)
+++|...++++.+.+ |.+...+..+..++...|++++|...+++..+ |+.. .+..++..+...|++++|+..++++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999886 56677788888999999999999999999875 4322 3334455577789999999999998
Q ss_pred HHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCCc
Q 038936 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKPD 428 (476)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~ 428 (476)
.+...+-+...+..+..++...|+.++|.+.++++... .+.+......+...|...|+ +|...++++ ...|.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhc
Confidence 87542223445667778888999999999999887653 22334445666667777774 777766664 23333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 429 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
...+..+ .+.-.|+.+.+... +++.+.++
T Consensus 509 ~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 509 NPGLLPL--VLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred CchHHHH--HHHHHhhhHHHHHH-HHhhccch
Confidence 3333333 36667777777766 77766543
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=1.8e-08 Score=90.58 Aligned_cols=444 Identities=15% Similarity=0.123 Sum_probs=272.5
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (476)
..+++...+++.+.+. +....+.....-.+...|+.++|........+..+. +...|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 4456666666666664 344455555555566778889998888877776543 677788877777777899999999
Q ss_pred HHHccc---ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC
Q 038936 84 FDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157 (476)
Q Consensus 84 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 157 (476)
|..... .|...|.-+.-.-++.|+++.....-..+.+- ....|..+..+..-.|++..|..+++...+.....|
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 988763 45677777777777778877766665555442 445688888888889999999999999887444567
Q ss_pred CchHHHHHHHHH------HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch--hhHH
Q 038936 158 NKFTLSSVLSAV------SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV--VSWT 229 (476)
Q Consensus 158 ~~~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ 229 (476)
+...+......+ ...|..+.|.+.+..-... +......-..-...+.+.+++++|..++..+..+++ ..|.
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 776665544433 3445556666555443322 111222233456778889999999999999976544 4444
Q ss_pred HH-HHHHHhcCChhHHH-HHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 230 AM-IGRYFQEGRREEGF-ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 230 ~l-~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
.. ..++.+..+.-++. .+|....+. .+-.......-+.......-.+....++....+.|+++--..+.++-.-=.+
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 43 34443333333333 555555443 1111111111122222233445566677777788876543333322211000
Q ss_pred cCChhh-HHHHHccCC--------------CCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHH
Q 038936 308 CGNVEN-SKKVFNGMP--------------RPDLVSWT--SLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLT 369 (476)
Q Consensus 308 ~~~~~~-a~~~~~~~~--------------~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~ 369 (476)
..=.++ +..+...+. .|....|. .+++.+-..|+++.|...++..+.+ .|+.+ .|..=.+
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR 413 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR 413 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH
Confidence 100011 111111111 24444444 4677899999999999999999885 46554 4555567
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCC-cHH--------HHH--HHHHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP-DKF--------LWA--SLLGG 438 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~--------~~~--~l~~~ 438 (476)
.+...|+++.|..+++++.+- -.+|...-..-+.-..++.+.++|.++........ +.. .|- .-+.+
T Consensus 414 I~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a 491 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA 491 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence 788999999999999999863 34555544466777889999999999887762111 111 222 23455
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 038936 439 CRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~ 457 (476)
|.+.|++..|++-+..+-+
T Consensus 492 y~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 492 YLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 6677777777765555443
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=3.1e-11 Score=98.76 Aligned_cols=232 Identities=15% Similarity=0.119 Sum_probs=194.1
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH-HHHH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA-GVLN 268 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 268 (476)
.|..--+.+.++|.+.|.+.+|++.++...+ +.+.+|-.|-+.|.+..++..|+.++.+-.+. .|-.+|+. -...
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 4444557789999999999999999998854 67889999999999999999999999998875 46556654 4556
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHH
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 345 (476)
.+...++.+.+.++++...+.. +.+.....++...|.-.++++-|+.+++++.+ .++..|+.+.-+|.-.+++|-+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 7778899999999999999885 66777777788889999999999999998875 6788999999999999999999
Q ss_pred HHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 346 LEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+..|++.+..--.|+. ..|..+.......||+..|.+.|+-.... .+...+.++.|+..-.+.|++++|..++..+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999876544554 35666788888899999999999988863 4556778999999999999999999999987
Q ss_pred C-CCCc
Q 038936 424 P-MKPD 428 (476)
Q Consensus 424 ~-~~p~ 428 (476)
. ..|+
T Consensus 456 ~s~~P~ 461 (478)
T KOG1129|consen 456 KSVMPD 461 (478)
T ss_pred hhhCcc
Confidence 3 3444
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=1.6e-09 Score=100.39 Aligned_cols=262 Identities=12% Similarity=0.089 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 102 (476)
.|+..+|..+|..|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. +|.+.+|..|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 455555555555555555555555 5555555544445555555555544455444443 44555555555555
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 103 TKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
...||+.. .+..++ -...+...+...|.-..-..++..+.-..+..||..+ .+......|-++.+.+++
T Consensus 94 r~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred HhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHH
Confidence 55555443 111111 1112223333333333333333332222233333322 222233344455555544
Q ss_pred HHHHHcC-CCchHHHHHHHHHHHHc-CCCHHHHHHHHHhhcc-cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038936 183 GYIMRTG-FDSDEVVWSALSDMYGK-CGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259 (476)
Q Consensus 183 ~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (476)
..+-... ..|... .++-+.. ...+++-........+ +++.++...+.+-...|+.+.|..++.+|.+.|++.+
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 3321111 011111 1222222 2234444444444444 7888999999999999999999999999999999888
Q ss_pred HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
..-|..++-+ .++...++.++.-|...|+.|+..|+...+..+..+|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888777755 78888889999999999999999999888877777555
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=1.1e-09 Score=99.25 Aligned_cols=239 Identities=16% Similarity=0.247 Sum_probs=151.7
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc----------chh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR----------DVV-SWTAMIGRYFQEGRREEGFALFSELIKS----- 254 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 254 (476)
|.-..+...+...|...|+++.|+.+++...+. .+. ..+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334455666778888888888888887776432 111 2334667788888888888888877642
Q ss_pred CC-CC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccC---CCCChh-h
Q 038936 255 GI-RP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM---PRPDLV-S 328 (476)
Q Consensus 255 ~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~-~ 328 (476)
|- .| -..+++.|...|.+.|++++|...++...+. +++. ..|.+. .
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQ 327 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHH
Confidence 10 11 1123444444556666666665555544332 1110 011221 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhc----C-CCC-
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKS---GTQPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKH----G-LTY- 395 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~- 395 (476)
++.++..+...+++++|..++++..+. -+.++ ..++..|...|...|++++|.+++++++... + ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344555566667777777766665432 11222 2468888888888899999988888887643 1 122
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC--------CCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM--------PMKPDK-FLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
....++.++..|.+.++..+|.++|.+. +..|++ .+|..|+..|...|+++.|+++.+.++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2345677888888888888888888764 244554 4889999999999999999999998874
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=2.3e-08 Score=91.85 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=133.5
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhc----
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN-CLLDMYAKC---- 74 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~---- 74 (476)
..+...|++++|++.++... .............+.+.|+.++|..+|..+++.+ |+...|- .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 46778899999999988764 3445566677788888999999999999998876 4444444 444444222
Q ss_pred -CChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHH-HHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 75 -GNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQ-ARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 75 -g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
.+.+....+++++.+ |.......+.-.+..-..+.. +...+..+..+.+ .+++.+-..|.......-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 245666777777654 222222222211221112221 2233333333333 34555544444333333334444443
Q ss_pred Hhc---c----------CCCCCc--hHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHH
Q 038936 150 QNF---E----------NSVSNK--FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214 (476)
Q Consensus 150 ~~~---~----------~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 214 (476)
... . .-+|+. .++..+...+...|+++.|.++++..+++. |-.+..|..-.+.+.+.|++.+|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 320 0 012222 133444455556666666666666666553 223455556666666666666666
Q ss_pred HHHHhhcccch---hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 215 QIFDKMVDRDV---VSWTAMIGRYFQEGRREEGFALFSELIKSG 255 (476)
Q Consensus 215 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 255 (476)
+.++....-|. ..-+-.+..+.+.|+.++|..++....+.+
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 66666544332 223334455556666666666666555444
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=5.6e-10 Score=96.92 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=133.1
Q ss_pred ChhHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHH
Q 038936 240 RREEGFALFSELIKSG-IRPN--AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 240 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
..+.++..+.+++... ..|+ ...|..+...+...|+.+.|...|+...+.. +.+...++.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555555321 1111 2234444445566666666666666666654 4456667777777777777777777
Q ss_pred HHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 317 VFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 317 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
.|++..+ | +...|..+..++...|++++|++.|++..+.+ |+..........+...++.++|.+.+.+.... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 7777654 3 34567777788888889999999998888753 44332222222334567888898888766543 2
Q ss_pred CCChhhHHHHHHHHHhcCChhhH--HHHHhh-CCCC----C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 394 TYTADHYACIVDLLARSGRFHEA--EDVISK-MPMK----P-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
+|+. +. ........|+..++ .+.+.+ .... | ....|..++..+...|++++|+..|+++++.+|.+..-
T Consensus 196 ~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred Cccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3332 21 22333445665443 222222 1111 2 23478888888999999999999999999999755443
Q ss_pred H
Q 038936 466 Y 466 (476)
Q Consensus 466 ~ 466 (476)
+
T Consensus 273 ~ 273 (296)
T PRK11189 273 H 273 (296)
T ss_pred H
Confidence 3
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.3e-08 Score=87.99 Aligned_cols=125 Identities=7% Similarity=-0.026 Sum_probs=91.2
Q ss_pred hhhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038936 2 IDILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 78 (476)
|..+..+|++++|+....++. +.+..++..-+.++.+.+.+++|+.+.+.-... ..+...+..-..+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 345678899999999999885 677778888888999999999999665543211 111111112223334789999
Q ss_pred HHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH
Q 038936 79 DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128 (476)
Q Consensus 79 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 128 (476)
+|+..++...+.+..+...-...+.+.|++++|..+|+.+.+.+...+..
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 99999996666666677888888999999999999999997654444433
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=1.2e-08 Score=93.71 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc------------------cchh--hHHHHHHHHH
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD------------------RDVV--SWTAMIGRYF 236 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------~~~~--~~~~l~~~~~ 236 (476)
.+..++..++..|+|+ ++..+-..|....+.+-..+++..... |... ++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3455566666677654 444455555544444444444444311 1222 3355567788
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPN-AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
..|++++|+.++++.++. .|+ ...|..-...+-+.|++.+|...++.....+ ..|..+-+..+..+.+.|++++|.
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888876 344 4566667777888888888888888888776 566666677778888888888888
Q ss_pred HHHccCCCCCh----------hhH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 316 KVFNGMPRPDL----------VSW--TSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 316 ~~~~~~~~~~~----------~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
.++....+++. ..| .....+|.+.|++..|++.|....+
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88887776441 122 3346678888988888877766654
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.34 E-value=1.1e-08 Score=93.18 Aligned_cols=365 Identities=15% Similarity=0.151 Sum_probs=232.4
Q ss_pred hhhhhhcCCHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 2 IDILCNQRRLKEALQILHQISHPSPS-IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
|.+|-...+|++|+.+-+-...|-.. .-.+.++.+...|+-++|-++-+ + +-.+ .+.++.|.+.|.+-+|
T Consensus 564 igmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~---s-----dgd~-laaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE---S-----DGDG-LAAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc---c-----cCcc-HHHHHHHHHcCCchHH
Confidence 44555556666666665555533332 33445566666676666655321 1 1122 3457788888888887
Q ss_pred HHHHHH--cccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 81 QTLFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 81 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
.+.... ..-.|......+..++++..-+++|-.+|+++..++- -+.+|-+-.-+.+|+++-+-.-. ..
T Consensus 635 ~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp-----~e 704 (1636)
T KOG3616|consen 635 ARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFP-----EE 704 (1636)
T ss_pred HHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCc-----HH
Confidence 765433 2235666777777778887778888888887765432 23333333334455554432211 11
Q ss_pred chHH-HHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhh--HHHHHHHH
Q 038936 159 KFTL-SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS--WTAMIGRY 235 (476)
Q Consensus 159 ~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~ 235 (476)
..+. ...-..+...|.++.|..-|-+. ......+.+......|.+|+.+++.+.+++..+ |..+...|
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea---------~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhy 775 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEA---------NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHY 775 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHh---------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHh
Confidence 1111 01111223344444444333221 122334566677889999999999887766544 67778899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
...|+++.|.++|.+. ..++-.+..|.+.|.++.|.++-.+.. |.......|-.-..-.-+.|++.+|.
T Consensus 776 an~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred ccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhh
Confidence 9999999999988653 234456778889999999988866554 32444555666666678899999999
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
++|-.+..|+.. |..|-+.|..+..+++.++-.. ..-..|...+..-+...|+...|.+.|-++.+
T Consensus 845 qlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d------ 910 (1636)
T KOG3616|consen 845 QLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD------ 910 (1636)
T ss_pred heeEEccCchHH-----HHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh------
Confidence 999998888854 6788999999998888776422 12234666778888889999999888766553
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
|.+-+.+|...+-|++|-++-+.-
T Consensus 911 ----~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 911 ----FKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHhcc
Confidence 566667777788888887776653
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.7e-09 Score=92.23 Aligned_cols=431 Identities=11% Similarity=0.055 Sum_probs=218.8
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHH
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 79 (476)
+.+..|+++.|+.+|.... ++|...|+.-..++...|++++|++=-.+.++. .|+ ...|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 4567888999999888763 677888888888888888888888776666664 455 4577788888888888999
Q ss_pred HHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChhHHHHHHHHHHh
Q 038936 80 AQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI-----SGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 80 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~ 151 (476)
|+..|.+-.+ | |...++-+..++ ..+.+. -+... ++..|..+. +.+.....+..-++.+..-..
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~--~~~~~--~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA--DQLFT--KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh--hhhcc--CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 9888888664 2 344555566555 111111 11111 111111111 111111111111111111100
Q ss_pred ccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC-------CCchHHHHHHHHHHHHcCCCH-HHHHHHHHhhccc
Q 038936 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-------FDSDEVVWSALSDMYGKCGSI-NEARQIFDKMVDR 223 (476)
Q Consensus 152 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 223 (476)
.-+...+ .-.++.+.......+.- .+...| ..|.. .........++. ++.. .+.
T Consensus 161 ~l~~~l~---d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~------~k~ 222 (539)
T KOG0548|consen 161 SLKLYLN---DPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERR------VKE 222 (539)
T ss_pred hhhcccc---cHHHHHHHHHHhcCccc-----cccccccccCCCCCCccc----ccCCCCCccchhHHHHH------HHH
Confidence 0000000 00011110000000000 000000 00000 000000000000 0000 000
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCC------chhh
Q 038936 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP------YSFA 297 (476)
Q Consensus 224 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 297 (476)
-..-...+.++..+..+++.|.+.+....+.. .+..-++....++...|.+......-....+.|... -...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 01112334444445555555555555555432 222222333334444444444444433333332110 0011
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCc
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGL 376 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 376 (476)
+..+..+|.+.++++.++..|++...+... -....+....++++...+...-. .|... -...-...+.+.|+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccC
Confidence 112334566667778887777775432111 11122233344455444444332 23331 11222556788899
Q ss_pred hhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 038936 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEA 454 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (476)
+..|+..|.+++.+ .|.|...|...+-+|.+.|.+..|++-.+.. ...|+ ...|..-+.++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 3667788888999999999999998887774 45554 44677777777788899999999999
Q ss_pred HHHcCCCCchhHHHHHHhh
Q 038936 455 LFEIEPENPATYVTMANIY 473 (476)
Q Consensus 455 ~~~~~p~~~~~~~~l~~~y 473 (476)
+++++|++......+...+
T Consensus 452 ale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHhcCchhHHHHHHHHHHH
Confidence 9999998877766665544
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5.1e-12 Score=76.55 Aligned_cols=50 Identities=30% Similarity=0.626 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (476)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.9e-08 Score=83.66 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=180.8
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHH
Q 038936 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212 (476)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (476)
.+..++...+...+-.+......+-|......+..++...|+.+.+...|+..+..+ +.+........-.+.+.|+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 344555555665555555545556666677777778888888888888887766443 2222222233334456677777
Q ss_pred HHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 213 ARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 213 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
...+...+.. .+...|..-+......++++.|+.+-++.++.. +-+...+..-...+...+++++|.-.|+..+..
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 7666666533 333445555556666777888888777777653 223334444444566778888888888777766
Q ss_pred CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHH-HHHH-hcCChHHHHHHHHHHHHcCCCCcHH-H
Q 038936 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLI-AGYA-QNGMPDKALEYFELLLKSGTQPDHI-V 363 (476)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-~ 363 (476)
. |.+...|..|++.|...|++.+|.-.-+...+ .+..+...+. ..+. .-.--++|.+++++.+. +.|+.. .
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~A 440 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPA 440 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHH
Confidence 4 55677788888888888888877655443332 2222222221 1111 11123677777777666 456543 4
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
.+.+...|...|....++.++++... ..||....+.|++.+.....+++|++.|..+ ...|+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 55566677788888888888888774 3677778888888888888888888888774 55554
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1e-09 Score=99.38 Aligned_cols=215 Identities=18% Similarity=0.214 Sum_probs=152.4
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHHh-----CC-CCc-hhhHHHHHHHhhhcCChhhHHHHHccCCC----------
Q 038936 261 FTFAGVLNACADHAAEELGKQVHGYMTRI-----GY-DPY-SFAASALVHMYSKCGNVENSKKVFNGMPR---------- 323 (476)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 323 (476)
.+...+...|...|+++.|..+++...+. |. .|. ....+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777776554 11 122 22334466778888888888888877652
Q ss_pred CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcC--C
Q 038936 324 PD-LVSWTSLIAGYAQNGMPDKALEYFELLLKS-----GT-QPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHG--L 393 (476)
Q Consensus 324 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 393 (476)
|. ..+++.|...|.+.|++++|...+++..+- |. .|... -++.++..|...+++++|..++++..+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 21 236777778889999988888887776542 11 22222 366677788999999999999998776432 2
Q ss_pred CC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 038936 394 TY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEI- 458 (476)
Q Consensus 394 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 458 (476)
.+ ...++..|+..|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467889999999999999999999886 11232 346788889999999999999999998773
Q ss_pred ---CCC---CchhHHHHHHhhhc
Q 038936 459 ---EPE---NPATYVTMANIYAS 475 (476)
Q Consensus 459 ---~p~---~~~~~~~l~~~y~~ 475 (476)
.|+ -..+|.+|+.+|..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHH
Confidence 344 45678889888864
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=1.6e-10 Score=106.86 Aligned_cols=253 Identities=11% Similarity=0.077 Sum_probs=164.3
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccc
Q 038936 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224 (476)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 224 (476)
++-.+.. .|+.|+..||..++.-||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 3444554 788888888888888888888888888 8888887777788888888888888888777665 677
Q ss_pred hhhHHHHHHHHHhcCChhH---HHHHHHHHHH----cCCCCCHhhHHHHHH--------------HHhccccHHHHHHHH
Q 038936 225 VVSWTAMIGRYFQEGRREE---GFALFSELIK----SGIRPNAFTFAGVLN--------------ACADHAAEELGKQVH 283 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~~~l~~--------------~~~~~~~~~~a~~~~ 283 (476)
+.+|..|..+|...||... +.+.+..+.. .|+......+-..+. .....|.++.+.+++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887544 2222222221 222211111111111 122234444444444
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 362 (476)
..+....... +... .+=+.-.....+++-...-+...+ +++.++...+.+-...|+.+.|..++.+|.+.|++.+..
T Consensus 163 ~~~Pvsa~~~-p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 163 AKVPVSAWNA-PFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred hhCCcccccc-hHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 3332221111 1111 011111222234444444444444 899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
-|..|+-+ .++..-+..+++-|.+. |+.|+.+|+...+..+.+.|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 88888765 77777888888777766 999999998877666655443
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=6.2e-09 Score=86.22 Aligned_cols=312 Identities=12% Similarity=0.082 Sum_probs=163.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 95 YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI---SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 95 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
..-+.+.+...|++..|+..|....+-|+..|.++. ..|...|+...|+.-+....+ .
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---l---------------- 101 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---L---------------- 101 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---c----------------
Confidence 344555666666666666666666666666555543 345555555555555555543 2
Q ss_pred hhhhhhHHHHHHHHHHcCCCchHHH-HHHHHHHHHcCCCHHHHHHHHHhhcccchh----------------h--HHHHH
Q 038936 172 IQCLRLGKEIHGYIMRTGFDSDEVV-WSALSDMYGKCGSINEARQIFDKMVDRDVV----------------S--WTAMI 232 (476)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------~--~~~l~ 232 (476)
+||... ...-...+.+.|.+++|..-|+.+.+.++. . ....+
T Consensus 102 -------------------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql 162 (504)
T KOG0624|consen 102 -------------------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL 162 (504)
T ss_pred -------------------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH
Confidence 333211 112234455666666666666666443221 0 11123
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
..+...|+...|+.....+++.. +.|...+..-..+|...|.+..|+.-++...+.. ..+...+..+...+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 33444555555555555555542 3444444444555555555555555554444443 223333334444455555555
Q ss_pred hHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Q 038936 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392 (476)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 392 (476)
.++...++..+-|+..-. +|..-+...+..+.++.| ......+++.++++..+...+.
T Consensus 241 ~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~-- 298 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKN-- 298 (504)
T ss_pred HHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhc--
Confidence 554444444432221100 000000001111111111 1123456666666666666643
Q ss_pred CCCC-----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 393 LTYT-----ADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 393 ~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.|+ ...+..+-.++...|++.+|++...++ ...|+ +.++.--..+|....+++.|+.-|+++.+.+|+|..+
T Consensus 299 -ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 299 -EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred -CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 333 223445556677778888888887774 55554 6677777888888888888888888888888887666
Q ss_pred HHHH
Q 038936 466 YVTM 469 (476)
Q Consensus 466 ~~~l 469 (476)
...+
T Consensus 378 reGl 381 (504)
T KOG0624|consen 378 REGL 381 (504)
T ss_pred HHHH
Confidence 5444
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=4.5e-07 Score=81.88 Aligned_cols=421 Identities=10% Similarity=0.055 Sum_probs=268.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhc
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKG 105 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 105 (476)
+..++. |-..+++...++..+...+. .+-...+.....-.+...|+-++|......-... +.+.|..+.-.+-..
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344444 44667888888888888773 3445566665555666789999999988887664 457788888888889
Q ss_pred CCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 106 GSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
.++++|++.|.....- |...|.-+.-.-.+.++++.....-.++.+ ..+.....|.....+..-.|+...|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 555666666666778888888887777764 23334556778888888899999999999
Q ss_pred HHHHHcCC-CchHHHHHHH------HHHHHcCCCHHHHHHHHHhhccc--ch-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 183 GYIMRTGF-DSDEVVWSAL------SDMYGKCGSINEARQIFDKMVDR--DV-VSWTAMIGRYFQEGRREEGFALFSELI 252 (476)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 252 (476)
++..+... .|+...+... .....+.|..++|.+.+...... |- ..-.+-...+.+.++.++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 99887752 4554444322 23456678888888887665432 11 122344677889999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHh--ccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH-HHHHccCC-CCChhh
Q 038936 253 KSGIRPNAFTFAGVLNACA--DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS-KKVFNGMP-RPDLVS 328 (476)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-~~~~~~ 328 (476)
.. .||...|...+..+. -.+..+....+|....+. .|....-..+-.......++... ..++.... +.-+.+
T Consensus 247 ~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 247 ER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred hh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 86 477777666555443 233333333555554443 11111111111111111222222 22333322 222334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH----HcC----------CCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLL----KSG----------TQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 392 (476)
+..+...|-.-...+-..++.-.+. ..| -+|.. .++..++..+...|+++.|..+++.+.+
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--- 399 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--- 399 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---
Confidence 4444444332221111111111111 111 13444 3556677888999999999999999985
Q ss_pred CCCC-hhhHHHHHHHHHhcCChhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 393 LTYT-ADHYACIVDLLARSGRFHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 393 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
..|+ ++.|..-++++...|++++|...++++. ..||...-..-+.-..+.++.++|..+.....+.+-
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 3555 4566677899999999999999999973 345655444556666788999999988887766443
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.29 E-value=6e-10 Score=95.12 Aligned_cols=253 Identities=13% Similarity=0.099 Sum_probs=170.7
Q ss_pred HHHHHcCCCHHHHHHHHHhhccc----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDR----DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
++-+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.... .|.......+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888886555 2221 1223445677888888876543 3333333 66666666666666554555
Q ss_pred HHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 277 ELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
+.+..-++........ .+.........++...|++++|++++... .+.......+..|++.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6665555554433323 23333334446678889999999888876 56677777889999999999999999999874
Q ss_pred CCCCcHHHHHHHHHHHhc--c--CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cH
Q 038936 356 GTQPDHIVFVGVLTACTH--A--GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DK 429 (476)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~--~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 429 (476)
..| .+...++.++.. . +.+.+|..+|+++.+ ..++++.+.+.++.+....|++++|.++++++ ...| ++
T Consensus 161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 334 445556665533 3 368999999999886 45678888999999999999999999999985 4444 56
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCchh
Q 038936 430 FLWASLLGGCRIHGNL-DLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~ 465 (476)
.++..++-+....|+. +.+.+.+.++...+|+++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 6777788777778887 67888999999999988643
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4.4e-08 Score=79.71 Aligned_cols=186 Identities=13% Similarity=0.042 Sum_probs=143.0
Q ss_pred hhhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCh
Q 038936 2 IDILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC-LLDMYAKCGNI 77 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 77 (476)
|.-+.+..++++|++++..-. +.+....+.+..+|-+..++..|-.+|+++-.. .|...-|.. -.+.+.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhccc
Confidence 455788899999999998775 447788888999999999999999999999874 455555543 23555688999
Q ss_pred HHHHHHHHHcccc-cchHHHHHHH--HHHhcCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038936 78 SDAQTLFDEMQER-DVCSYNTMIS--GFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153 (476)
Q Consensus 78 ~~A~~~~~~~~~~-~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 153 (476)
.+|+++...|... +...-..-+. .....+|+..+..+++.... .+..+.+.......+.|+++.|.+-|+...+.+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 9999999998863 3222222222 23468999999999999984 667777777777889999999999999999867
Q ss_pred CCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCC
Q 038936 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191 (476)
Q Consensus 154 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (476)
|..|- ..|+..+ +..+.++++.|.+...+++++|++
T Consensus 175 Gyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 175 GYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred CCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 76664 3455444 445678999999999999988864
No 86
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.9e-11 Score=74.01 Aligned_cols=50 Identities=28% Similarity=0.440 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (476)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.2e-07 Score=87.82 Aligned_cols=249 Identities=12% Similarity=0.147 Sum_probs=153.5
Q ss_pred hhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-------C-CCChhhHHHHHHHHHh
Q 038936 3 DILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-G-------F-KPGVFISNCLLDMYAK 73 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~ 73 (476)
+.|.--|+.+.|.+-++.+. +..+|..+.+.|.+.++++-|.-++-.|... | . .|+ .+-....-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34566788888887777664 5678999999999999988887777766532 1 1 122 332333344457
Q ss_pred cCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 74 CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-DNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 74 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
.|.+++|+.+|.+.++ |..|-+.|-..|.+++|.++-+.-..- --.||......+-..++.+.|++.|++...
T Consensus 813 LgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~- 886 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV- 886 (1416)
T ss_pred HhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC-
Confidence 8999999999998654 555667777889999999887654321 234677777777778889999998886542
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 232 (476)
|-...+..+. .++...+.+.+. ..|...|.--....-..|+.+.|+.+|....+ |..++
T Consensus 887 ----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~V 945 (1416)
T KOG3617|consen 887 ----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMV 945 (1416)
T ss_pred ----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhhe
Confidence 1111111110 111111222221 12334555555666667778877777765532 55556
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHH
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
+..|-.|+.++|-++-++ .-|......+.+.|...|++.+|..+|-+..
T Consensus 946 rI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666666666666655433 2244455556666666666666666665543
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=2.9e-07 Score=84.39 Aligned_cols=191 Identities=13% Similarity=0.170 Sum_probs=122.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
+.+.....+|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|-+.- .++-.+.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344556677777777777776543 223345666777888888888887775432 334567778888888
Q ss_pred hhHHHHHccCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 312 ENSKKVFNGMPRPDL--VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 312 ~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+.|.++-.+...|.. ..|-.-..-+-++|++.+|.+++-... .|+. .+..|-+.|..+..+++..+-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 888888777776543 345444555777788887777764332 2443 34567777777777666543321
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
..-..+...++.-|...|++..|...|-+++ -|.+....|...+-|++|.++.
T Consensus 879 ----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 ----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH
Confidence 2234556677888888888888888887764 2445555566666666665543
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=6.4e-07 Score=84.92 Aligned_cols=401 Identities=12% Similarity=0.127 Sum_probs=247.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH-HHH---HHHHc------cccc--------------
Q 038936 36 CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD-AQT---LFDEM------QERD-------------- 91 (476)
Q Consensus 36 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~---~~~~~------~~~~-------------- 91 (476)
.-++++..--..+++..+..|.. |..++++|...|...++-.+ -++ .|+.. .++|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 34566777778888888899876 99999999999987754332 111 11111 1111
Q ss_pred ---------chHHHHHHHHHHhcCCHHHHHHHHhc-----------CC------CCCcchHHHHHHHHHhcCChhHHHHH
Q 038936 92 ---------VCSYNTMISGFTKGGSLEQARNLFDE-----------MP------QRDNFSWTAMISGYVRYNQPIEALDL 145 (476)
Q Consensus 92 ---------~~~~~~l~~~~~~~g~~~~a~~~~~~-----------~~------~~~~~~~~~l~~~~~~~~~~~~a~~~ 145 (476)
...|....+.+.+..|.+-=.+++.+ .. ..|+......+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 12344445555555554433333321 11 13667777788899999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---
Q 038936 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--- 222 (476)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 222 (476)
++++.-...........-.++-.-+-.-+...+.++.+++..... |+ +.......+-+++|..+|+....
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~ 1079 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVS 1079 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHH
Confidence 998875232222222222222222223344444555544443321 11 12222233333444444433210
Q ss_pred ----------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH
Q 038936 223 ----------------------RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280 (476)
Q Consensus 223 ----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 280 (476)
..+..|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.+++-.
T Consensus 1080 A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1080 AIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 13457888888888889888888776542 46678888999999999999999
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 360 (476)
.++...++....|... +.|+-+|++.++..+.++++. -||......+..-|...|.++.|.-+|..
T Consensus 1154 ~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred HHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence 9888887776566544 568888999888887776643 46766677777777777777777666643
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCC--CcHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK--PDKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~ 438 (476)
..-|..|...+...|+++.|...-+++ .+..+|.....+|...+.+.-|. -.+.. -...-...++.-
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHH
Confidence 234555666667777777776654333 24556776666666555543332 11211 234455667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
|...|-+++-+.+++..+.++..+-..+..|+-+|+.
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 7788888888888888888887777778788777763
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=7.4e-09 Score=81.09 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=109.3
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++..+ .+-.+.|....-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 334444444444444444432 33333444444444444444444444444432 23345556666666777777777
Q ss_pred HHHHHHHHcCCC-CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--
Q 038936 347 EYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-- 423 (476)
Q Consensus 347 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 423 (476)
..|++....-.- -...+|..+.-+..+.|+.+.|.+.|++..+. .+..+.....+.....+.|++..|...++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 777776654211 12346666666667777777777777777753 2333445666677777777777777777765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 424 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
...++.....-.+..-...||.+.+-+.=.++.+..|..+.
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 23355555555555556667777777777777777776543
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=5.2e-07 Score=75.15 Aligned_cols=304 Identities=14% Similarity=0.077 Sum_probs=170.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHH---HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HH
Q 038936 59 PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM---ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI---SG 132 (476)
Q Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~ 132 (476)
.++.-..-+...+...|++.+|+.-|....+-|+..|.++ ...|...|+-..|+.=+.++.+.-+..+.+-+ ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 3445555667777788888888888888888766665554 44577778777777777777654444444433 56
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCC-chH------------HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHH
Q 038936 133 YVRYNQPIEALDLYRMMQNFENSVSN-KFT------------LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199 (476)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 199 (476)
+.+.|.++.|..-|+...+..+..-. ... ....+..+...|+...+.+....+++.. +.+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 77889999998888888763221111 011 1112223334445555555555555432 445555555
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 200 LSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
-..+|...|++..|+.-++...+ .+...+..+-..+...|+.+.++...++.++. .||....-..-. ..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK------kl 266 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK------KL 266 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH------HH
Confidence 55555555655555555544422 23333444444455555555555555555543 344332211110 11
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC--h---hhHHHHHHHHHhcCChHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD--L---VSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~---~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
....+.+..| ......++|.++.+..+...+ |. . ..+..+-.++...+++.+|+...
T Consensus 267 kKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 267 KKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 1111111111 112344556666655555553 22 1 12334455666777888888888
Q ss_pred HHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 350 ELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+.++ +.|+ ..++.--..+|.-...++.|+.-|+.+.+
T Consensus 331 ~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 88877 3454 66777777778777888888888887775
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.21 E-value=9.9e-08 Score=90.09 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=117.1
Q ss_pred CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 10 RLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 10 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+...|+..|=+.. +.-...|..|...|+...+...|.++|...-+.+- .+..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3555666655543 33445788888888887888899999998887652 3677788888999999999999888554
Q ss_pred ccccc-----chHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 87 MQERD-----VCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 87 ~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
..+.+ ...|....-.|...++...|...|+...+. |...|..+..+|.+.|++..|+++|.+... ..|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcH
Confidence 44322 233444556677778888888888777653 555677788888888888888888877754 3443
Q ss_pred chH-HHHHHHHHHhhhhhhhHHHHHHHHH
Q 038936 159 KFT-LSSVLSAVSAIQCLRLGKEIHGYIM 186 (476)
Q Consensus 159 ~~~-~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (476)
... -.......+..|.+.++...+...+
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 1122223356677777776666554
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=8.9e-09 Score=80.64 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=108.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|+...... +.+..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34445555555555555555555543 2333445555555555555555555555555543 444455555555666666
Q ss_pred ChhhHHHHHccCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 310 NVENSKKVFNGMPR-P----DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 310 ~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
++++|...|+.... | -..+|..++-+..+.|+++.|.+.|++.++.. +....+...+.....+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 66666666665553 2 23466666666667777777777777776653 223345555666666777777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
+..... ..++....-..+++-.+.|+-+.+-+.=..
T Consensus 197 ~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 197 ERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 666653 235665565556666666666665554433
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=4.5e-08 Score=85.07 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHhccCCCCCc--hHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 038936 138 QPIEALDLYRMMQNFENSVSNK--FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215 (476)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 215 (476)
..+.++.-+.++.......|+. ..|..+...+...|+.+.|...++..++.. |.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444555555554322222221 223333333444444444444444444332 3334455555555555555555555
Q ss_pred HHHhhcc--c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 216 IFDKMVD--R-DVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 216 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
.|+...+ | +..+|..+..++...|++++|...|++..+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555533 1 123344444455555555555555555544
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=4.1e-06 Score=78.02 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=121.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-ccchHHHHHHHHHHhcCCHHHHH
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
......|-+++|..+|.+.++. -.|-..|-..|.+++|.++.+.--+ .=..+|.....-+-..+|.+.|+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHH
Confidence 3345778899999999988773 3455667788999999998876333 22356777777777888999999
Q ss_pred HHHhcCCC-----------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 038936 113 NLFDEMPQ-----------------------RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169 (476)
Q Consensus 113 ~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 169 (476)
+.|++... +|...|.-....+-..|+.+.|+.+|...+. |..+++..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 98887642 2445555556666678999999999988876 67777778
Q ss_pred HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
|-.|+.++|-++-++ ..|...+-.+.+.|-..|++.+|..+|.+.
T Consensus 949 C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888888877654 235556667888888888888888888766
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=1.8e-06 Score=88.44 Aligned_cols=363 Identities=10% Similarity=-0.004 Sum_probs=218.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhh
Q 038936 98 MISGFTKGGSLEQARNLFDEMPQRDNFS--WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 98 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 175 (476)
....+...|++.+|..........+... ...........|++..+..++..+.. .....+..........+...|++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~-~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPW-EVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCH-HHHhcCcchHHHHHHHHHHCCCH
Confidence 3444666777777776666554432111 11122334456777777777666532 11112222223334444567788
Q ss_pred hhHHHHHHHHHHcCC------Cch--HHHHHHHHHHHHcCCCHHHHHHHHHhhcc--c--ch----hhHHHHHHHHHhcC
Q 038936 176 RLGKEIHGYIMRTGF------DSD--EVVWSALSDMYGKCGSINEARQIFDKMVD--R--DV----VSWTAMIGRYFQEG 239 (476)
Q Consensus 176 ~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~ 239 (476)
+.+...+......-- .+. ......+...+...|++++|...+++... + +. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 888887776654210 111 12223344566678999999998888643 1 11 23455666777889
Q ss_pred ChhHHHHHHHHHHHcCC---CCC--HhhHHHHHHHHhccccHHHHHHHHHHHHHh----CCC--C-chhhHHHHHHHhhh
Q 038936 240 RREEGFALFSELIKSGI---RPN--AFTFAGVLNACADHAAEELGKQVHGYMTRI----GYD--P-YSFAASALVHMYSK 307 (476)
Q Consensus 240 ~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~ 307 (476)
++++|...+.+.....- .+. ..+...+...+...|+++.|...+++.... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999998888764311 111 123444555677889999999888876553 211 1 12334455666777
Q ss_pred cCChhhHHHHHccCCC------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHH-----HHHHHHHhc
Q 038936 308 CGNVENSKKVFNGMPR------P--DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-DHIVF-----VGVLTACTH 373 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~ 373 (476)
.|++++|...+++... + ....+..+...+...|++++|...+++........ ....+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 8999999888877642 1 12334446667888999999999988875531111 11111 111233455
Q ss_pred cCchhhHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCChhhHHHHHhhC-------CCCCc-HHHHHHHHHHHHh
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTAD----HYACIVDLLARSGRFHEAEDVISKM-------PMKPD-KFLWASLLGGCRI 441 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~ 441 (476)
.|+.+.|.+++...... ...... .+..++.++...|+.++|...++++ +..++ ..+...+..++..
T Consensus 666 ~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 666 TGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred CCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 78888988887665431 111111 1346778889999999999998875 11222 2356667777889
Q ss_pred cCChHHHHHHHHHHHHcCCCCc
Q 038936 442 HGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.|+.++|...+.+++++.....
T Consensus 744 ~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred cCCHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999765443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=5.4e-07 Score=81.51 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=112.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C---Ch--hhHHHHHHHHH
Q 038936 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P---DL--VSWTSLIAGYA 337 (476)
Q Consensus 265 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~--~~~~~l~~~~~ 337 (476)
.+...+...|+++.|...++...+.. +.+...+..+..++...|++++|...+++..+ | +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445666777777777777777664 44455666677777777777777777776654 1 11 23445777788
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCcHHHH-H--HHHHHHhccCchhhHHHHHHHHHHhc-CCCC---ChhhHHHHHHHHHh
Q 038936 338 QNGMPDKALEYFELLLKSGT-QPDHIVF-V--GVLTACTHAGLVDKGLQYFHSIKEKH-GLTY---TADHYACIVDLLAR 409 (476)
Q Consensus 338 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~ 409 (476)
..|++++|+.++++...... .+..... . .++..+...|..+.+.++ +.+.... ...+ ........+.++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 88888888888888764322 1111111 1 223333444544333332 2222110 1101 11222346667788
Q ss_pred cCChhhHHHHHhhCC----C---CC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 410 SGRFHEAEDVISKMP----M---KP----DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 410 ~g~~~~A~~~~~~~~----~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.|+.++|.+.++.+. . .. .+........++...|++++|.+.+..++.+.
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 889999998887762 1 11 11122233344667899999999999998754
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.10 E-value=3.8e-09 Score=80.63 Aligned_cols=123 Identities=10% Similarity=0.028 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
..++++.++ +.|+. +..+...+...|++++|...|+.+... -+.+...+..++.++.+.|++++|+..|+++ .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356666666 34554 445677888999999999999999863 4557888999999999999999999999996 4
Q ss_pred CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 425 MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 425 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
..| +...+..++.++...|++++|+..|++++++.|+++..+.+.+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 67788999999999999999999999999999999999998887653
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.4e-07 Score=74.70 Aligned_cols=285 Identities=12% Similarity=0.084 Sum_probs=146.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc--chHH-HHHHHHH
Q 038936 61 VFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN--FSWT-AMISGYV 134 (476)
Q Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-~l~~~~~ 134 (476)
..-+.+.+..+++..++.+|++++..-.+. +....+.|..+|.+..++..|-..++.+...-+ .-|. --...+.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 334556666667777777777777665543 334556666677777777777777776654321 1221 1234555
Q ss_pred hcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHH
Q 038936 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214 (476)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 214 (476)
+.+.+..|+++...|... |+...-..-+.+ ......+++..+.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqa---------------------------------AIkYse~Dl~g~r 132 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQA---------------------------------AIKYSEGDLPGSR 132 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHH---------------------------------HHhcccccCcchH
Confidence 667777777776666530 111111111111 1112334444444
Q ss_pred HHHHhhcc-cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 038936 215 QIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293 (476)
Q Consensus 215 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 293 (476)
.++++... .+..+.+.......+.|+++.|.+-|+...+.+--.....|+..+. ..+.++.+.|.+...+++++|++.
T Consensus 133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence 44444442 2333333333333444555555555554444322222233333322 223444555555555554443321
Q ss_pred ch----------------------------hhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHHHHHHHHhcC
Q 038936 294 YS----------------------------FAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNG 340 (476)
Q Consensus 294 ~~----------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 340 (476)
.+ ..+|.-...+.+.|+++.|.+.+-.|.. .|+++...+.-.= ..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccC
Confidence 11 1223333445677888888888888873 4666655543221 234
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
++.+..+-+.-++..+. -...||..++-.|++..-++-|-.++.
T Consensus 291 ~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred CccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 45555555555555543 345677777778888877777776653
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=6.4e-09 Score=88.87 Aligned_cols=227 Identities=13% Similarity=0.056 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhcc
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP-NAFTFAGVLNACADH 273 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 273 (476)
.....+.+++...|+++.++.-+..-..|.......+...+...++-+.+..-+.+....+..+ +..........+...
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3444556677777777665554444344444444444433333234444444444433333222 222222223345667
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCC-hhhHHHHHHHHH----hcCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD-LVSWTSLIAGYA----QNGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~A~~~ 348 (476)
|+++.|.+++... .+.......+.+|.+.++++.|.+.++.|.+.+ -.+...+..++. -.+.+.+|..+
T Consensus 116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 8888887776532 344555667788888888888888888887632 223333444432 33468999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-hhHHHHHhhCC-CC
Q 038936 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF-HEAEDVISKMP-MK 426 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~ 426 (476)
|+++.+. ..+++.+.+.++.++...|++++|.+.+.++... .+-++.+...++.+....|+. +.+.+.+.++. ..
T Consensus 190 f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 190 FEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 9998765 5678888898999999999999999999988753 355677778888888888887 56777888873 44
Q ss_pred CcHH
Q 038936 427 PDKF 430 (476)
Q Consensus 427 p~~~ 430 (476)
|+.+
T Consensus 267 p~h~ 270 (290)
T PF04733_consen 267 PNHP 270 (290)
T ss_dssp TTSH
T ss_pred CCCh
Confidence 5433
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=8.4e-07 Score=80.28 Aligned_cols=252 Identities=9% Similarity=-0.023 Sum_probs=132.2
Q ss_pred HhhhhhhhHHHHHHHHHHcCCCchHHHHHH---HHHHHHcCCCHHHHHHHHHhhcccch---hhHHHHHHHHHhcCChhH
Q 038936 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSA---LSDMYGKCGSINEARQIFDKMVDRDV---VSWTAMIGRYFQEGRREE 243 (476)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 243 (476)
...|+++.+.+.++...+.. |.+...+.. ........+..+.+.+.++.....++ .....+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 44555566666555555442 333333321 11111223444445554443222222 223344456677777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-Cch--hhHHHHHHHhhhcCChhhHHHHHcc
Q 038936 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-PYS--FAASALVHMYSKCGNVENSKKVFNG 320 (476)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (476)
|...+++..+.. +.+...+..+...+...|++++|...++...+.... ++. ..+..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777654 334455566666677777777777777776654311 221 2344566777778888888888877
Q ss_pred CCCCCh--hhHH------HHHHHHHhcCChHHHHHH--HHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 321 MPRPDL--VSWT------SLIAGYAQNGMPDKALEY--FELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 321 ~~~~~~--~~~~------~l~~~~~~~~~~~~A~~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
...+.+ .... .++.-+...|....+... +......... .....-.....++...|+.++|...++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 653211 1111 122223334433322222 1111111101 111222245667788899999999998876
Q ss_pred HhcCC-------CCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 389 EKHGL-------TYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 389 ~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
....- ............++...|+.++|.+.+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53111 011222334455677999999999988775
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=5.9e-09 Score=92.42 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=165.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
..-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+....-.|...|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344567888888888888887765 4566777777777777888888888888888775 55677777788888888888
Q ss_pred hhHHHHHccCCCCChh-hHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhccCchhhH
Q 038936 312 ENSKKVFNGMPRPDLV-SWTSLI---------AGYAQNGMPDKALEYFELL-LKSGTQPDHIVFVGVLTACTHAGLVDKG 380 (476)
Q Consensus 312 ~~a~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 380 (476)
..|.+.++...+..+. .|.... ..+..........++|-++ ...+..+|+.....|.-.|-..|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 8888887766421100 000000 1111112233344445444 3444457778888888888899999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDK-FLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
+.+|+.++.. -|-|..+|+.|+-.++...+.++|+..+.++ .++|.. .++..++-+|...|.+++|...|-.++.+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999963 3557788999999999999999999999996 778864 47788888999999999999999999987
Q ss_pred CCC
Q 038936 459 EPE 461 (476)
Q Consensus 459 ~p~ 461 (476)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 655
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.4e-05 Score=74.79 Aligned_cols=440 Identities=13% Similarity=0.126 Sum_probs=239.7
Q ss_pred hhhhhcCCHHHHHHHHHhcC--CCCHHHHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 3 DILCNQRRLKEALQILHQIS--HPSPSIYSS----LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+.|.++|-+.+|++.+..+. ......-+. -+..+.-.-.++.+.+++..|...++..+..+...+..-|...=-
T Consensus 614 qLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg 693 (1666)
T KOG0985|consen 614 QLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLG 693 (1666)
T ss_pred HHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34668888899998887764 111111110 122344455788999999999999888888888888877877766
Q ss_pred hHHHHHHHHHccc---------------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC---------------C-----
Q 038936 77 ISDAQTLFDEMQE---------------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---------------R----- 121 (476)
Q Consensus 77 ~~~A~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~----- 121 (476)
.+..+++|+.... .|+...-..|.+.++.|++.+..++.++-.- +
T Consensus 694 ~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPL 773 (1666)
T KOG0985|consen 694 AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPL 773 (1666)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCce
Confidence 7788888887763 4677777889999999999988887765421 1
Q ss_pred ----Ccch-HHH------------HHHHHHhcCChhHHHHHHHHHHhccCCCCCchH-------------HHHHHHHHHh
Q 038936 122 ----DNFS-WTA------------MISGYVRYNQPIEALDLYRMMQNFENSVSNKFT-------------LSSVLSAVSA 171 (476)
Q Consensus 122 ----~~~~-~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~ 171 (476)
|..- -+. .|..|.+.=++.+.-.+...+.. +.-+... ..-+..-+.+
T Consensus 774 iiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~~v~gq~~~deLv~EvEk 850 (1666)
T KOG0985|consen 774 IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLILSVRGQFPVDELVEEVEK 850 (1666)
T ss_pred EEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHHHHhccCChHHHHHHHHh
Confidence 1111 111 12233322222222222222111 0001111 1122233445
Q ss_pred hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHH----HHHHhh------cccch----------------
Q 038936 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR----QIFDKM------VDRDV---------------- 225 (476)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~------~~~~~---------------- 225 (476)
.++...-...++..++.| ..+..++++|...|...++-.+-. ..++.. .++|+
T Consensus 851 RNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~el 929 (1666)
T KOG0985|consen 851 RNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLEL 929 (1666)
T ss_pred hhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHH
Confidence 566666667777777777 457778888888877665432211 000000 11111
Q ss_pred -------hhHHHHHHHHHhcCChhHHH-----------HHHHHHHHcCC--CCCHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 226 -------VSWTAMIGRYFQEGRREEGF-----------ALFSELIKSGI--RPNAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 226 -------~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
..|....+-+.+..+.+-=. .+.++..+.++ ..|+...+.-+.++...+-+.+-++++++
T Consensus 930 I~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEK 1009 (1666)
T KOG0985|consen 930 INVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEK 1009 (1666)
T ss_pred HHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 01111222222222221111 12222222221 12333334444455555555555555544
Q ss_pred HHHhCC--CCchhhHHH---------------------------HHHHhhhcCChhhHHHHHccCCC-------------
Q 038936 286 MTRIGY--DPYSFAASA---------------------------LVHMYSKCGNVENSKKVFNGMPR------------- 323 (476)
Q Consensus 286 ~~~~~~--~~~~~~~~~---------------------------l~~~~~~~~~~~~a~~~~~~~~~------------- 323 (476)
+.-.+. .-+...-+. +.......+-+++|..+|++..-
T Consensus 1010 IvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~ 1089 (1666)
T KOG0985|consen 1010 IVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIG 1089 (1666)
T ss_pred HhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhh
Confidence 432110 000001111 11222333445566665554320
Q ss_pred ------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc
Q 038936 324 ------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391 (476)
Q Consensus 324 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 391 (476)
..+..|..+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-..++..+..+
T Consensus 1090 ~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk- 1162 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK- 1162 (1666)
T ss_pred hHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-
Confidence 34567888999999999998888877432 35667888999999999999999988777765
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--------C--------------CCCcHHHHHHHHHHHHhcCChHHHH
Q 038936 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKM--------P--------------MKPDKFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 392 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~--------------~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (476)
.-.|.. -..|+-+|++.+++.+-.+++.-- + .-.++..|..+...+...|++..|.
T Consensus 1163 ~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1163 VREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred hcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445544 456888899999888877665321 0 0123344555555555666666665
Q ss_pred HHHHHH
Q 038936 450 RAAEAL 455 (476)
Q Consensus 450 ~~~~~~ 455 (476)
...+++
T Consensus 1241 D~aRKA 1246 (1666)
T KOG0985|consen 1241 DAARKA 1246 (1666)
T ss_pred HHhhhc
Confidence 554443
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=6.4e-09 Score=92.20 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=162.0
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
+.+.|++..|.-.|+..++.+ |.+...|..|.......++-..|+..++++.+ .|......|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457888999999999988886 77788999999999999999999999998886 34567777888899999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHH--------HHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 347 EYFELLLKSGTQPDHIVFVG--------VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
..++.-+...++ ...... .-..+..........+.|-++....+..+|+++...|+..|.-.|++++|++
T Consensus 374 ~~L~~Wi~~~p~--y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPK--YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCcc--chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998765311 100000 0012223334455666777777665666888999999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.|+.+ ..+| |..+|+.|+.++....+.++|+..|.+++++.|.-..++++||..|.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 99996 6677 67799999999999999999999999999999999999999987764
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=1.1e-07 Score=76.80 Aligned_cols=156 Identities=10% Similarity=0.144 Sum_probs=116.7
Q ss_pred HHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
-.|...|+++.+..-.+.+..|. ..+...++.++++..++..++.+ +.|...|..+...|...|++++|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777666544433222221 01223566788888888888764 4577788889999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLL-ARSGR--FHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.|+++... .+.+...+..++.++ ...|+ .++|.++++++ ...| +...+..++..+...|++++|+..|+++++
T Consensus 95 a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 95 AYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999864 355777888888864 67777 59999999996 4555 667888889999999999999999999999
Q ss_pred cCCCCchhHHHH
Q 038936 458 IEPENPATYVTM 469 (476)
Q Consensus 458 ~~p~~~~~~~~l 469 (476)
+.|++..-+..+
T Consensus 173 l~~~~~~r~~~i 184 (198)
T PRK10370 173 LNSPRVNRTQLV 184 (198)
T ss_pred hCCCCccHHHHH
Confidence 998877665444
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.96 E-value=9e-07 Score=83.90 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=113.7
Q ss_pred hHHHHHHHHHcccccc---hHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 77 ISDAQTLFDEMQERDV---CSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
...|+..|-+..+-|+ ..|..|...|....+...|.+.|++..+- +...+....+.|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 5555555555444332 56888888888777888888888877654 45567777788888888888887743332
Q ss_pred hccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHH-
Q 038936 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT- 229 (476)
Q Consensus 151 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 229 (476)
+......-...+...--.+...++...+..-++...+.. |.|...|..++.+|.++|++..|.++|.+...-++..+.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211111112222222223455667777777777766554 567788888899999999999999999777554443322
Q ss_pred H--HHHHHHhcCChhHHHHHHHHHHH
Q 038936 230 A--MIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 230 ~--l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
. ....-+..|.+.++...+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 12345567888888888777654
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=1.2e-05 Score=82.60 Aligned_cols=324 Identities=12% Similarity=0.065 Sum_probs=207.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCC-----CCCc--hHHHHHHHH
Q 038936 100 SGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS-----VSNK--FTLSSVLSA 168 (476)
Q Consensus 100 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~ll~~ 168 (476)
......|+++.+..+++.+.. .++.........+...|+++++...+......... .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345567888888888877742 23444444556667889999999999877542111 1111 111222334
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCCHHHHHHHHHhhcc-------cc--hhhHHHHHHHH
Q 038936 169 VSAIQCLRLGKEIHGYIMRTGFDSD----EVVWSALSDMYGKCGSINEARQIFDKMVD-------RD--VVSWTAMIGRY 235 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~--~~~~~~l~~~~ 235 (476)
+...|+++.+...++.........+ ....+.+...+...|++++|...+++... +. ......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678899999999988776321111 23445667778889999999999988743 11 12345566778
Q ss_pred HhcCChhHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhC--CCC--chhhHHHHHHH
Q 038936 236 FQEGRREEGFALFSELIKS----GIR--P-NAFTFAGVLNACADHAAEELGKQVHGYMTRIG--YDP--YSFAASALVHM 304 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 304 (476)
...|+++.|...+.+.... +.. + ....+..+...+...|+++.|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886552 211 1 12233344455667799999999988876541 112 23344456677
Q ss_pred hhhcCChhhHHHHHccCCC----CC-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHH
Q 038936 305 YSKCGNVENSKKVFNGMPR----PD-LVSW-----TSLIAGYAQNGMPDKALEYFELLLKSGTQPDH---IVFVGVLTAC 371 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~----~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~ 371 (476)
+...|++++|...+..... .. ...+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 8889999999888877632 11 1111 11224455688999999888775542211111 1134566778
Q ss_pred hccCchhhHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 372 THAGLVDKGLQYFHSIKEKH---GLTY-TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
...|+.++|...++++.... +..+ ...+...++.++.+.|+.++|...+.++
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999877531 2222 2235667788899999999999999886
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.9e-06 Score=76.31 Aligned_cols=353 Identities=14% Similarity=0.108 Sum_probs=209.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC-chHHHHHHHHHHhhhh
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN-KFTLSSVLSAVSAIQC 174 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 174 (476)
..+.+..|+++.|..+|.+... +|.+.|..-..+|...|++++|++=-.+-.+ ..|+ ...|+..-.++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhccc
Confidence 3456778999999999988764 3667788888999999999999887766654 4444 4578888888889999
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHH------Hhhcccch--------hhHHHHHHHHHhc--
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF------DKMVDRDV--------VSWTAMIGRYFQE-- 238 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~~~~--------~~~~~l~~~~~~~-- 238 (476)
++.|..-|.+-++.. +.+...+..+..++... .. +.+.| ..+ ..++ ..|..++...-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l-~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKL-ANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHh-hcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999888765 56677777787777211 10 11111 111 0011 1122222211110
Q ss_pred -----CChhHHHHHHHHHHH--------cC-------CCC------------C----------HhhHHHHHHHHhccccH
Q 038936 239 -----GRREEGFALFSELIK--------SG-------IRP------------N----------AFTFAGVLNACADHAAE 276 (476)
Q Consensus 239 -----~~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~ 276 (476)
.+.+........+.. .| ..| | ..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 001111111111100 00 011 0 01123344445555666
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCCh---h-------hHHHHHHHHHhcCChHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL---V-------SWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~ 346 (476)
+.+.+.+....+.. .+..-++....+|...|.+..+...-....+..- . ....+..+|.+.++++.++
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 77777776666654 4444455555667777766666554444332111 1 1222334556666777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-DHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
..|.+.+...-.|+.. .+....+++........ -+.|.. .-...-+..+.+.|++..|++.+.++ .
T Consensus 319 ~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 7777765543333321 12233334433333222 123322 11223366788999999999999996 4
Q ss_pred CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 425 MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 425 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
..| |...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 445 7789999999999999999999999999999999888887665544
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=2e-07 Score=78.75 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CC---CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PM---KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
.++..|.+.|++.+|+..++++ .. .| ....+..++.++...|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4667788999999999999886 22 23 3457888999999999999999998888776663
No 110
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=5e-07 Score=78.44 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCh----hh
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS---GRF----HE 415 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 415 (476)
++++.+++++++.. +-|..+|.....++...|+++++++.++++++. -+-+...|+....++.+. |+. ++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 45566666666543 234555655555666666666666666666653 233444555554444443 222 23
Q ss_pred HHHHHhh-CCCCC-cHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 416 AEDVISK-MPMKP-DKFLWASLLGGCRIH----GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 416 A~~~~~~-~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+++...+ +...| |...|+.+...+... ++..+|...+.++++.+|+++.++..|+.+|.+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 4444433 33344 455666666665552 344556677777777777777777777777653
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3.4e-06 Score=67.98 Aligned_cols=252 Identities=13% Similarity=0.062 Sum_probs=153.1
Q ss_pred HHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHH
Q 038936 202 DMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279 (476)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 279 (476)
+-+.-.|.+..++..-..... .++..-..+.++|...|.+..... ++.... .|....+..+.......++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 344445777777666555432 233333445566776666544322 222222 34444444444444444444333
Q ss_pred H-HHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 280 K-QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358 (476)
Q Consensus 280 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 358 (476)
. .+.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+.+-|...+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3 334444444333443334444466788888888888877733 3333333345567777888888888888873
Q ss_pred CcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHHHH
Q 038936 359 PDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKFLW 432 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 432 (476)
-+..|.+.|..++.+ .+.+..|.-+|+++.++ .+|+..+.+..+.+....|++++|..+++.+ +...++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 366677777777653 35678888888888863 6788888888888888888888888888886 333456666
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCch
Q 038936 433 ASLLGGCRIHGNL-DLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 433 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~ 464 (476)
..++-+-...|.. +...+.+.+.....|+++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 6666555555554 4456677777777787653
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=2.2e-06 Score=68.52 Aligned_cols=166 Identities=16% Similarity=0.249 Sum_probs=108.5
Q ss_pred HHHHHhhhcCChhhHHHHHccCCC--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 038936 300 ALVHMYSKCGNVENSKKVFNGMPR--PDLV-SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376 (476)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 376 (476)
.++-+...+|+.+.|..+++.+.. |++. +-..-..-+-..|++++|+++++.+++.+ +.|..++..=+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 333444445555555555554432 2221 11111223455678888888888888775 4556666655666666777
Q ss_pred hhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc---CChHHHHHH
Q 038936 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH---GNLDLAKRA 451 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~ 451 (476)
.-+|++.+....+. +..|.+.|..+.+.|...|++++|.-.++++ -..| ++..+..+...+.-. .+..-|.++
T Consensus 136 ~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77888888888874 6778888888888888888888888888886 3445 555566666665544 356778888
Q ss_pred HHHHHHcCCCCchhHHH
Q 038936 452 AEALFEIEPENPATYVT 468 (476)
Q Consensus 452 ~~~~~~~~p~~~~~~~~ 468 (476)
|.++++++|.+..++..
T Consensus 214 y~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHhChHhHHHHHH
Confidence 88888888876555543
No 113
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=1.5e-05 Score=69.47 Aligned_cols=187 Identities=13% Similarity=0.059 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh--hhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV--ENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFE 350 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 350 (476)
+++++..++.+.+.+ +.+..+++....++.+.|+. +++..+++++.+ .+..+|+.....+...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555555555443 23333344333333333332 445555555543 355667777777777778888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhcc---Cch----hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChhhHHHH
Q 038936 351 LLLKSGTQPDHIVFVGVLTACTHA---GLV----DKGLQYFHSIKEKHGLTYTADHYACIVDLLARS----GRFHEAEDV 419 (476)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~ 419 (476)
++++.++. |...|+.....+.+. |.. ++.+++..+++.. .|-+...|+.+..++... ++..+|.+.
T Consensus 167 ~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 88876533 344454444444333 222 4566666666653 345666677777777663 344567777
Q ss_pred HhhC-CCCC-cHHHHHHHHHHHHhcC------------------ChHHHHHHHHHHHHcCCCCchhH
Q 038936 420 ISKM-PMKP-DKFLWASLLGGCRIHG------------------NLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 420 ~~~~-~~~p-~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
+.+. ...| +......++..|+... ..++|.++++.+-+.+|=...-|
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 7664 3333 4556666777666432 34678888888866777444333
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=5.3e-07 Score=68.64 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=90.8
Q ss_pred HHHHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 348 YFELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 348 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
.++++... .|+ ......+...+...|++++|.+.++.+... .+.+...+..++.++.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556553 343 345666777788899999999999988864 3557778888999999999999999999886 34
Q ss_pred CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 426 KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 426 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
.| +...+..++..+...|++++|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 567788888889999999999999999999999887643
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=3.7e-06 Score=81.59 Aligned_cols=216 Identities=13% Similarity=0.146 Sum_probs=149.0
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH-HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL-NACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
.+...|..|+..+...+++++|.++.+...+. .|+...+..+. ..+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35567889999999999999999999977764 46555443333 244455554444433 23
Q ss_pred HHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh
Q 038936 302 VHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (476)
+.......++.-+..+...+.. .+...+..+..+|-+.|+.++|..+++++++.. +-|....+.++..|... +.++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333334444333333333333 233467778899999999999999999999976 45677888899888888 9999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----------------------CCCCcHHHHHHHHH
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----------------------PMKPDKFLWASLLG 437 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~ 437 (476)
|.+++.++... +...+++.++.+++.++ ...--+.++.-+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99998888764 33333444444444443 11122334445556
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.|...+++++++.+++.+++++|+|..+...|+..|..
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 67778899999999999999999999999999998863
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=7.7e-06 Score=75.32 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=170.0
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038936 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269 (476)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (476)
.+|-...-..+...+...|-...|..+|++. ..|...+.+|...|+..+|..+..+..+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455555567788899999999999999875 4677788999999999999999888877 37888888888887
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
.....-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|..+..+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778888887765433 2223333445578899999999876653 3468888888888999999999
Q ss_pred HHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 347 EYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...++++.+- + ..+..+|...+....+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988877 45655 57999999999999999999999998864 3 555666778888888999999999998876
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=3.5e-06 Score=80.91 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
++..+..|.....+.|++++|..+++...+ +.|+.. ....++.++.+.+++++|...+++.... -+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 355666667777777777777777777776 345443 4555666677777777777777777753 34455556667
Q ss_pred HHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 404 VDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
+.++.+.|++++|..+|+++ ...|+ ..++..++.++...|+.++|...|+++++...+-...|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 77777777777777777775 23333 5567777777777777777777777777766555445443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=6.3e-06 Score=69.59 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh--hHH
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDV------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF--TFA 264 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 264 (476)
....+..++..+...|++++|...|+++.+.++ ..+..+..++...|++++|...++++.+........ ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344556666777777777777777777644221 245666677777777777777777777643111111 222
Q ss_pred HHHHHHhcc--------ccHHHHHHHHHHHHHh
Q 038936 265 GVLNACADH--------AAEELGKQVHGYMTRI 289 (476)
Q Consensus 265 ~l~~~~~~~--------~~~~~a~~~~~~~~~~ 289 (476)
.+..++... |+.+.|...++.+.+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 222233222 5556666666665554
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=4.5e-06 Score=76.78 Aligned_cols=233 Identities=10% Similarity=0.070 Sum_probs=176.0
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHH
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGR 234 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 234 (476)
|--..-..+...+...|-...|..+++.+. .+..++.+|...|+..+|..+..+-.+ ||+..|..+++.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 333344556667778888888888887654 566788999999999999999887755 566778888887
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH
Q 038936 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (476)
.....-+++|.++.+..... .-..+.....+.++++++.+.++.-.+.+ +....+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 77777788888888765432 11222222344789999999999888775 66778888888999999999999
Q ss_pred HHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc
Q 038936 315 KKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391 (476)
Q Consensus 315 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 391 (476)
.+.|..... | +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++....
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999988774 4 45689999999999999999999999999987 4445566666667789999999999999987643
Q ss_pred CCCCChhhHHHHHHHH
Q 038936 392 GLTYTADHYACIVDLL 407 (476)
Q Consensus 392 ~~~~~~~~~~~l~~~~ 407 (476)
....|..+...++...
T Consensus 618 ~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhcccchhhHHHHHHH
Confidence 3333555555454443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=5.1e-06 Score=67.00 Aligned_cols=153 Identities=14% Similarity=0.082 Sum_probs=103.7
Q ss_pred HHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 299 SALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
..+-..+...|+-+....+...... .+.......+....+.|++.+|+..+++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4445556666666666666655432 333455557777777888888888888777653 566777777777788888
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCC-C-CcHHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM-K-PDKFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
+.+.|...|.+..+-. +-++..++.++-.|.-.|+++.|..++..... . .|..+-..+.......|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888777777642 33444577777777778888888887777522 2 256666777777777788888777665
Q ss_pred H
Q 038936 454 A 454 (476)
Q Consensus 454 ~ 454 (476)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 5
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=8.5e-07 Score=67.74 Aligned_cols=118 Identities=8% Similarity=-0.072 Sum_probs=89.2
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
.++++..+-++..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+++... .+.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DAS 90 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC
Confidence 34444444455556667778888999999999999988864 346677888888899999999999999999863 456
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHH
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLL 436 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 436 (476)
+...+..++.++...|++++|+..|+++ ...|+ ...+....
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 7788888999999999999999999885 55554 33444333
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=4.5e-08 Score=52.98 Aligned_cols=34 Identities=44% Similarity=0.753 Sum_probs=26.6
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 55 SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888887763
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=3.5e-06 Score=82.85 Aligned_cols=226 Identities=15% Similarity=0.202 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH---hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNA---FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
..|-..|......++.++|.++.++.+.. +++-.. ..|.++++.-..-|.-+...++|+++.+.- ..-..|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34666666666777777777777766543 111111 234444444444555666666666665542 223445566
Q ss_pred HHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--H-HHHHHHHHHHhccC
Q 038936 302 VHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--H-IVFVGVLTACTHAG 375 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~-~~~~~l~~~~~~~~ 375 (476)
...|.+.+.+++|.++++.|.+ .....|...+..+.++++-+.|..++.+.++. -|. . ....-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence 6667777777777777666664 34556666666666666666677777666663 232 1 12223333345666
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC---CCCCc--HHHHHHHHHHHHhcCChHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM---PMKPD--KFLWASLLGGCRIHGNLDLAKR 450 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 450 (476)
+.+++..+|+..... .|--...|+.+++.-.+.|+.+.+..+|+++ +..|- -..|...+..--.+|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 777777677666653 3334455666666666777777777777664 22332 2244444444444566555555
Q ss_pred HHHHHHH
Q 038936 451 AAEALFE 457 (476)
Q Consensus 451 ~~~~~~~ 457 (476)
+=.++.+
T Consensus 1693 VKarA~E 1699 (1710)
T KOG1070|consen 1693 VKARAKE 1699 (1710)
T ss_pred HHHHHHH
Confidence 5555554
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=5.6e-08 Score=52.58 Aligned_cols=33 Identities=39% Similarity=0.703 Sum_probs=27.2
Q ss_pred cCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
+|++||..+|+.+|++|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367888888888888888888888888888877
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.2e-05 Score=63.44 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=101.7
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC-ChhhHHHHHHHHHh----cC
Q 038936 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-DLVSWTSLIAGYAQ----NG 340 (476)
Q Consensus 266 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~ 340 (476)
-...|+..++++.|.+..+... +......=+..+.+..+++-|...+++|.+. +..+.+.|.+++.+ .+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 3345667777777777665421 1122223345566677777777777777764 34456656666553 35
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH-HH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE-DV 419 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~ 419 (476)
...+|.-+|++|-+. .+|++.+.+..+.++...|++++|..+++.+..+ -..++++...++.+-...|...++. +.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 678899999999775 5788889998888899999999999999999875 3556667777777777777765554 34
Q ss_pred HhhC
Q 038936 420 ISKM 423 (476)
Q Consensus 420 ~~~~ 423 (476)
+.+.
T Consensus 265 l~QL 268 (299)
T KOG3081|consen 265 LSQL 268 (299)
T ss_pred HHHH
Confidence 4444
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.00052 Score=65.28 Aligned_cols=216 Identities=13% Similarity=0.186 Sum_probs=140.5
Q ss_pred hhhcCCHHHHHHHHHhcC--CCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 5 LCNQRRLKEALQILHQIS--HPSPSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
....+++.+|+....++. .||.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...|+.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345678888888888875 34333 3334443 46889999999998888776544 778888888999999999999
Q ss_pred HHHHHHccc--ccchHHHHHHHHHHhcCCHHH----HHHHHhcCCCCCcchHHHHHHHHHhc-CC---------hhHHHH
Q 038936 81 QTLFDEMQE--RDVCSYNTMISGFTKGGSLEQ----ARNLFDEMPQRDNFSWTAMISGYVRY-NQ---------PIEALD 144 (476)
Q Consensus 81 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~ 144 (476)
..+|+...+ |+......+..+|++.+++.+ |.++++..+++--..|+ +++...+. .. ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHH
Confidence 999999886 555566667777888776654 67777766654433443 33333322 11 123555
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHH-HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 038936 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG-YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223 (476)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 223 (476)
.++.+....|...+..-...-+..+...|++++|.+++. ...+.-.+.+...-+.-+..+...++|.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666666534322333333344445566778888888884 3333333444445556677778888888887777777554
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=3.2e-05 Score=76.48 Aligned_cols=222 Identities=13% Similarity=0.167 Sum_probs=159.9
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC-CC---chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-c-hhhHHHH
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FD---SDEVVWSALSDMYGKCGSINEARQIFDKMVDR-D-VVSWTAM 231 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~l 231 (476)
+...|...+......++.+.|.++.++++..- +. --..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666777777778888888877776542 11 12346777777777778888888888888663 3 3457888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCC
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGN 310 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 310 (476)
...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.+..+.-.+ .........+++-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88899999999999999998876 3456677888888888888888888888887765211 134555667777788899
Q ss_pred hhhHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCchhhH
Q 038936 311 VENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTACTHAGLVDKG 380 (476)
Q Consensus 311 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 380 (476)
.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-.. .|...+..--+.|+-..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99988888887752 45688889999899999999999999998887766543 344444433344444333
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=4.5e-06 Score=67.47 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHH-HHhcCC--hHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAG-YAQNGM--PDKALE 347 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~-~~~~~~--~~~A~~ 347 (476)
++.+++...++...+.+ +.+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|+ .++|.+
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 33444444444444443 44444455555555555555555555554442 233344444443 234444 355666
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
++++..+.+ +.+...+..+...+...|++++|+..|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666655543 12334455555555556666666666665554
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=2e-05 Score=63.74 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=116.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcC
Q 038936 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNG 340 (476)
Q Consensus 264 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 340 (476)
..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 33444455556555555555443322 244555566677888888888888888888764 57788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 420 (476)
++++|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++...... -+-+..+-..+.......|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999988852 234567788888888999999999999888863 3346777888888999999999999888
Q ss_pred hhC
Q 038936 421 SKM 423 (476)
Q Consensus 421 ~~~ 423 (476)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 764
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=7.4e-07 Score=73.20 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=81.8
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDL 447 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 447 (476)
-..+.+++++|+..|.++++- .|-+...|..-+.+|.+.|.++.|++-.+.. .+.|. ..+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 356788899999999998852 2345555667788899999999999888875 56664 4589999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 448 AKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 448 A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|++.|+++++++|+|.....+|.++
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999999888877654
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=6.1e-06 Score=63.39 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACI 403 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 403 (476)
.|..++..+ ..++...+...++.+.+...... ......+...+...|++++|...|+.+... ...|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 445555555 47888999888999988642221 223444667788999999999999999975 32222 2244567
Q ss_pred HHHHHhcCChhhHHHHHhhCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 404 VDLLARSGRFHEAEDVISKMPMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
+.++...|++++|+..++..... .....+...+..+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88899999999999999886433 345567788888999999999999999874
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=3.5e-05 Score=75.05 Aligned_cols=282 Identities=10% Similarity=0.022 Sum_probs=138.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH
Q 038936 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201 (476)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 201 (476)
+...+..|+..+...+++++|.++.+......+..+....+..+ .+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-----------------hhh
Confidence 44567777777778888888888877665522222222222222 33333332222211 222
Q ss_pred HHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHH
Q 038936 202 DMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279 (476)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 279 (476)
.......++.-...+...+.+ .+..++..+..+|-+.|+.+++...++++++.. +.|....+.+...++.. +.+.|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 333333333222222223322 122245556666666666666666666666655 44555566666666555 66666
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQ 358 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 358 (476)
.+++...... |...+++.++..+|.++..-++.-+ +.-..+.+++... |..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~-------------d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDF-------------DFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccc-------------hHHHHHHHHHHhhhccc
Confidence 6665554432 4444555556655555554333221 1112222222222 111
Q ss_pred CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHH
Q 038936 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 438 (476)
--..++..+-..|...+++++++.+++.+.+. -+.+.....-++.+|. +.+ +.+|...-+..+..
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~--~kY----------~~~~~~ee~l~~s~- 285 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK--EKY----------KDHSLLEDYLKMSD- 285 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH--HHc----------cCcchHHHHHHHhc-
Confidence 22234444555666777788888888777753 2334444445555543 111 11111111111111
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCCchhHH
Q 038936 439 CRIH-GNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 439 ~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.... ..+..++.-|++.+-.+|.|-..|.
T Consensus 286 l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 286 IGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred cccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 1122 3567788888888888887754443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=3.2e-05 Score=68.17 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=92.2
Q ss_pred HHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchh
Q 038936 303 HMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 378 (476)
..+...|.+++|+..++.+.+ | |+..+......+.+.++.++|.+.++++... .|+ ......+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 344556677777777776653 3 4445555566777777778888877777774 454 444555667777777777
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
+|+..++.... ..+.++..|..|+++|...|+..+|.. +....+...|++++|+..+..+.+.
T Consensus 392 eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~---------------A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALL---------------ARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHH---------------HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 77777777765 345566677777777777777655543 3344566677777777777777765
Q ss_pred C
Q 038936 459 E 459 (476)
Q Consensus 459 ~ 459 (476)
.
T Consensus 455 ~ 455 (484)
T COG4783 455 V 455 (484)
T ss_pred c
Confidence 4
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.51 E-value=2.8e-06 Score=63.05 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM-PMKPD----KFLWASLL 436 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 436 (476)
++..++..+.+.|++++|.+.+.++...++-.+ ....+..++.++.+.|++++|.+.++.+ ...|+ ...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667777888888888877776422111 1345666778888888888888888775 22333 44677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
.++...|++++|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88888899999999999999999988766544
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.49 E-value=4.5e-06 Score=74.03 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=99.1
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
...|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.++.. +-+...+..-...+.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34566667777888888888888888777777778888888888899999999988753 33555666666778889999
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 424 (476)
+.|+++.+++... .|.+..+|..|+.+|.+.|++++|+-.+..++
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999863 35566789999999999999999999888774
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=2.5e-05 Score=75.24 Aligned_cols=132 Identities=12% Similarity=0.004 Sum_probs=81.4
Q ss_pred CCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHH
Q 038936 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLI 333 (476)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~ 333 (476)
+.+...+..|.....+.|..++|..+++...+.. |.+......+...+.+.+++++|+...++... | +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4455666666666666777777777777666653 34445555566666666667666666666654 2 233455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666777777776666632 223456666666666666666666666666653
No 137
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.38 E-value=0.0014 Score=57.65 Aligned_cols=415 Identities=13% Similarity=0.115 Sum_probs=233.7
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHH------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH--HHh
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSI------YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM--YAK 73 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 73 (476)
+-+++++.+|.++|.++- ..++.. -+.+++++.. ++.+.....+..+.+.. | ...|..+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 457899999999999984 223222 3345566644 56777777777776642 2 3344444433 337
Q ss_pred cCChHHHHHHHHHcccc------------------cchHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CcchHH
Q 038936 74 CGNISDAQTLFDEMQER------------------DVCSYNTMISGFTKGGSLEQARNLFDEMPQR--------DNFSWT 127 (476)
Q Consensus 74 ~g~~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~ 127 (476)
.+.+.+|.+.+....+. +-..=+..+..++..|.+.+++.+++++..+ +..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 88999999988766531 1122345677888999999999999888642 667777
Q ss_pred HHHHHHHhc--------CC-------hhHHHHHHHHHHh-----ccCCCCCchHHHHHHHHHHhh--hhhhhHHHHHHHH
Q 038936 128 AMISGYVRY--------NQ-------PIEALDLYRMMQN-----FENSVSNKFTLSSVLSAVSAI--QCLRLGKEIHGYI 185 (476)
Q Consensus 128 ~l~~~~~~~--------~~-------~~~a~~~~~~~~~-----~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~ 185 (476)
.++-.+.+. .. ++-+.-..+++.. .....|......+++....-. .....-.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 754433321 11 1222222233322 113445444455554443322 2233333444444
Q ss_pred HHcCCCchHH-HHHHHHHHHHcCCCHHHHHHHHHhhc--------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038936 186 MRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMV--------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256 (476)
Q Consensus 186 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 256 (476)
.+.-+.|+-. +...+...+.. +.+++..+-+.+. +.=+.++..++....+.++...|.+.+.-+.-.
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l-- 327 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL-- 327 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--
Confidence 4444555433 33344444443 5555555554442 233457888888899999999999888877654
Q ss_pred CCCHhhHH-------HHHHHHh-ccc---cHHHHHHHHHHHHHhCCCCchhhHHHHHH---HhhhcCC-hhhHHHHHccC
Q 038936 257 RPNAFTFA-------GVLNACA-DHA---AEELGKQVHGYMTRIGYDPYSFAASALVH---MYSKCGN-VENSKKVFNGM 321 (476)
Q Consensus 257 ~~~~~~~~-------~l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~ 321 (476)
.|+...-. .+-+..+ ... +...-..+|+.....++.. ......|+. -+-+.|. -++|+++++.+
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34332111 1112222 111 2223334455544443221 122223332 2344554 77888888877
Q ss_pred CC---CChhhHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCcHH----HHHHHHHH--HhccCchhhHHHHHH
Q 038936 322 PR---PDLVSWTSLI----AGYAQ---NGMPDKALEYFELLLKSGTQPDHI----VFVGVLTA--CTHAGLVDKGLQYFH 385 (476)
Q Consensus 322 ~~---~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~a~~~~~ 385 (476)
.+ -|..+-|.+. ..|.+ ...+.+-+.+-+-..+.|++|-.+ .-+.+.++ +..+|++.++.-.-.
T Consensus 407 l~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 65 3433333222 22322 233444444555556677776433 34444444 457899998876544
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHH
Q 038936 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433 (476)
Q Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 433 (476)
-+. .+.|++.+|..++-++....++++|...+..++ |+..+++
T Consensus 487 WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 487 WLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 333 478999999999999999999999999999986 3444443
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.37 E-value=0.0017 Score=58.41 Aligned_cols=182 Identities=11% Similarity=0.092 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC---ChhhHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG---NVENSKKVFNGMPR----PDLVSWTSLIAGYAQNGMPDKALEY 348 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (476)
.+++..+++.....-...+..+|..+.+.--..- ..+.....++++.. .-..+|..++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556655544433334444444432221111 24445555555442 3345678888888888889999999
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC---
Q 038936 349 FELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP--- 424 (476)
Q Consensus 349 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 424 (476)
|.+..+.+..+ +......++.-+ -.++..-|..+|+--..++| .++.-....+..+...++-+.|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988777 445566666644 46788999999998887643 344445677888899999999999999972
Q ss_pred CCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 425 MKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 425 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
..|+ ...|..++.--..-|+...+.++-++....-|
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 2343 45899999888888999999999998887666
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.36 E-value=8.3e-06 Score=72.74 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=59.9
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDL 447 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 447 (476)
.+...|++++|++.|+++++. .+.+...|..++.+|.+.|++++|+..++++ ...| +...|..++.+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344556666666666666643 2334455556666666666666666666664 3333 34456666666666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 448 AKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 448 A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|+..|+++++++|+++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666665555544
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=4.8e-05 Score=61.11 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=115.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
.|..++-+....|+.+-|...++.+...- |.+. .-..-..-+...|.+++|+++|+...++ -|.|..++..-+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 45666777888999999999999998863 4433 3222233356689999999999999975 35566677777777
Q ss_pred HHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 407 LARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.-..|+.-+|++-+... ....|...|..+...|...|++++|.-.+++++=..|.|+..+..|+.++
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 78889888998888775 45569999999999999999999999999999999999999999998875
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00011 Score=64.82 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDL 406 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 406 (476)
.+-.....+...|++++|+..++.++..- +-|+.........+.+.++.++|.+.++++... .|+ ......++.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 33334445667889999999999988862 345555566677889999999999999999964 444 6667788999
Q ss_pred HHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 407 LARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
|.+.|+..+|++.++.. ..+.|+..|..+..+|...|+..++...+.+...+...-..+..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999986 34447889999999999999999999999988887654333333
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=2.2e-05 Score=69.73 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (476)
.....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+.. +.+...+..-...+...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777778899999999999988888777788888888888889999999888653 445555555566678888
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
+++.|..+.+++.... |.+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999888874 5556688888888888888888888888776
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.33 E-value=2e-06 Score=55.53 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.++..+.+.|++++|++.|+++ ...| +...+..++.++...|++++|...|+++++.+|+||
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3567888999999999999986 5556 566889999999999999999999999999999875
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=1.9e-05 Score=60.01 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++.... .+.+...+..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 334455666777788888888888877754 335566777777777888888888888877653 35556677777888
Q ss_pred HHhcCChhhHHHHHhhC-CCCCcHHH
Q 038936 407 LARSGRFHEAEDVISKM-PMKPDKFL 431 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~-~~~p~~~~ 431 (476)
+...|++++|.+.|++. ...|+...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccch
Confidence 88888888888888775 44454443
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=3e-06 Score=58.01 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=35.3
Q ss_pred cCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 339 NGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|.+++++ ... + +.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555554321 1233333345555555555555555554 111 0 112233334455555555555555
Q ss_pred HHHh
Q 038936 418 DVIS 421 (476)
Q Consensus 418 ~~~~ 421 (476)
++|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.26 E-value=2e-05 Score=59.23 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
.....+..-+...|++++|..+|+-+..- -+-+..-|..|+-++...|++++|+..+..+ ...| |+..+-.++.++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34455666678899999999999988853 2445667888999999999999999999986 3344 667888889999
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 038936 440 RIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~ 459 (476)
...|+.+.|.+.|+.++..-
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999865
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=2.5e-05 Score=60.01 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=78.7
Q ss_pred cCChhhHHHHHccCCC--CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhh
Q 038936 308 CGNVENSKKVFNGMPR--PDL----VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 379 (476)
.++...+...++.+.+ |+. ...-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555553 221 22333556788899999999999999987633322 244557778889999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
|+..++... +.......+...+++|.+.|++++|...|++
T Consensus 104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999986643 2344555677889999999999999998876
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.22 E-value=0.0011 Score=57.31 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHhhcc----cc-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CH
Q 038936 196 VWSALSDMYGKC-GSINEARQIFDKMVD----RD-----VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP-----NA 260 (476)
Q Consensus 196 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 260 (476)
.+..+...|... |++++|++.|++..+ .+ ...+..+...+.+.|++++|..+|++........ +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455666666 677777777766632 11 1234556677888888888888888876643221 11
Q ss_pred h-hHHHHHHHHhccccHHHHHHHHHHHHHhC--CCCc--hhhHHHHHHHhhhc--CChhhHHHHHccCCCCChhhHHHHH
Q 038936 261 F-TFAGVLNACADHAAEELGKQVHGYMTRIG--YDPY--SFAASALVHMYSKC--GNVENSKKVFNGMPRPDLVSWTSLI 333 (476)
Q Consensus 261 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~l~ 333 (476)
. .+...+-++...||...|...++...... +..+ ......|+.++-.. ..++.++.-|+.+.+.|..--..|+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 1 12223334556678888888888776552 2222 33445566666443 3566777778887777765544443
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.22 E-value=4.1e-05 Score=60.83 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
...+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...++++... .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566666777777778888777777776432222 245666677777777777777777777753 23344555666
Q ss_pred HHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+.++...|+...+..-++.+ .+.+++|.+.++++++.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 66666666655544322221 123678899999999999987
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.22 E-value=6.2e-05 Score=70.24 Aligned_cols=140 Identities=19% Similarity=0.147 Sum_probs=100.3
Q ss_pred CCChhhHHHHHHHH--HhcC---ChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhcc--------CchhhHHHHHHHHH
Q 038936 323 RPDLVSWTSLIAGY--AQNG---MPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHA--------GLVDKGLQYFHSIK 388 (476)
Q Consensus 323 ~~~~~~~~~l~~~~--~~~~---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 388 (476)
..+...|...+.+. ...+ +...|..+|++.++. .|+. ..+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35667777777763 3333 367899999999985 4654 3344433333221 12344445544444
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
.....+.++..|..++......|++++|...++++ ...|+...|..++..+...|+.++|...|++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32123445677888888888899999999999996 67788889999999999999999999999999999998774
No 151
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.22 E-value=0.0038 Score=56.24 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHHHHc
Q 038936 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFN 319 (476)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (476)
.+.....++++...-...-..+|...|+...+...+..|..+|.+..+.+..+ ...+.++++..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55556666666554322333566677777777788888888888888887666 66777777776665 56677888887
Q ss_pred cCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcC--
Q 038936 320 GMPR--PDL-VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHG-- 392 (476)
Q Consensus 320 ~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 392 (476)
.-.+ +|. .--...+.-+...++-..+..+|++....++.|+. ..|..++.--+.-|+...+.++-++....+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6654 443 33445666677788888888888888887666554 5788888877888888888888777776543
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 393 LTYTADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 393 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
..+....-..+++.|.-.+...--..-++
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 23333344455555655555444333333
No 152
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0054 Score=57.53 Aligned_cols=355 Identities=13% Similarity=0.086 Sum_probs=179.6
Q ss_pred HhcCChhHHHHHHHHH--------HHcCCCCChhhHHH-----HHHHHHhcCChHHHHHHHHHccccc---chHHHHHHH
Q 038936 37 RQNRALEEGKKVHSHL--------KSSGFKPGVFISNC-----LLDMYAKCGNISDAQTLFDEMQERD---VCSYNTMIS 100 (476)
Q Consensus 37 ~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~ 100 (476)
.+.-++++-..+...+ .+.|++.+..-|.. ++..+...+.+..|+++-..+..|. ...|.....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~ 479 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWAR 479 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHH
Confidence 3445555554444433 24466666666654 4666777889999999988887665 456666666
Q ss_pred HHHhcC---CHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC---CCchHHHHHHHHHHhh
Q 038936 101 GFTKGG---SLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV---SNKFTLSSVLSAVSAI 172 (476)
Q Consensus 101 ~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~ 172 (476)
.+++.. +-+-+..+-+++.. .+..+|..+..-....|+.+-|..+++.=....... .+-..+...+.-+...
T Consensus 480 ~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies 559 (829)
T KOG2280|consen 480 RKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIES 559 (829)
T ss_pred HHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhc
Confidence 666552 33445555555555 366678888888888899998888876432211111 1223344555556666
Q ss_pred hhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHH--H
Q 038936 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS--E 250 (476)
Q Consensus 173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~ 250 (476)
|+.+....++-.+.+.- +...+ +....+...|..+|.+..+....+ . +..+...++-.++...|. .
T Consensus 560 ~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~~p~a~~lY~~~~r~~~~~--~-l~d~y~q~dn~~~~a~~~~q~ 627 (829)
T KOG2280|consen 560 GDTDLIIQVLLHLKNKL---NRSSL------FMTLRNQPLALSLYRQFMRHQDRA--T-LYDFYNQDDNHQALASFHLQA 627 (829)
T ss_pred CCchhHHHHHHHHHHHH---HHHHH------HHHHHhchhhhHHHHHHHHhhchh--h-hhhhhhcccchhhhhhhhhhh
Confidence 66666666655554321 11111 111123445555555543321111 0 111112222222222211 1
Q ss_pred HH----HcCCCCCHhhHHHHHHHHhccccHHHH----------HHHHHHHHHh-CCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 251 LI----KSGIRPNAFTFAGVLNACADHAAEELG----------KQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 251 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
.. ..|..|+ .......+.+.....-. ..+.+.+... |.....-+.+--+.-+...|+..+|.
T Consensus 628 ~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ 704 (829)
T KOG2280|consen 628 SYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAE 704 (829)
T ss_pred hhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHH
Confidence 00 1122222 22223333333221111 1111111111 22233334444455556666666777
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
++-.+..-||-..|-.-+.++...+++++-+++-+.+. ++.-|..+..+|.+.|+.++|..++-+.- +
T Consensus 705 ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~--- 772 (829)
T KOG2280|consen 705 QLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---G--- 772 (829)
T ss_pred HHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---C---
Confidence 77666666776666666667777766666555443321 13445556666777777777766653322 1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
+.-.+.+|.+.|++.+|.+.--+
T Consensus 773 ----l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 773 ----LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ----hHHHHHHHHHhccHHHHHHHHHH
Confidence 11355666666666666655433
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.20 E-value=2e-05 Score=55.63 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=55.7
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG 443 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 443 (476)
.++..+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+++. ...| +...+..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444555566666666666666542 2223345555666666666666666666653 2222 3345666666677777
Q ss_pred ChHHHHHHHHHHHHcCC
Q 038936 444 NLDLAKRAAEALFEIEP 460 (476)
Q Consensus 444 ~~~~A~~~~~~~~~~~p 460 (476)
++++|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777777666
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=3.4e-06 Score=46.48 Aligned_cols=34 Identities=38% Similarity=0.757 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 360 (476)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999998888887
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=8.4e-06 Score=55.77 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=62.5
Q ss_pred cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCC-cHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP-DKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
.|+++.|+.+++++.+.....++...+..++.+|.+.|++++|..++++.+..| +......++.++...|++++|++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 588999999999999864322345566678999999999999999998854344 3345556688889999999999999
Q ss_pred HHH
Q 038936 453 EAL 455 (476)
Q Consensus 453 ~~~ 455 (476)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.13 E-value=0.00033 Score=60.59 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=23.3
Q ss_pred HHHHhhhc-CChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 301 LVHMYSKC-GNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 301 l~~~~~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+...|... |++++|++.|++..+ .. ..++..+...+.+.|++++|+++|++...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444 555555555554431 11 12333444445555555555555555544
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.12 E-value=6.3e-06 Score=44.98 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 359 (476)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.0002 Score=61.67 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA-CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998643 3345555555544 33467777899999999986 5667788999999
Q ss_pred HHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 406 LLARSGRFHEAEDVISKM-PMKPD----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--...|+.+....+.+++.+..|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999995 32233 3489999998889999999999999999999875543
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00055 Score=59.23 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=77.0
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhh---------------HHHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS---------------WTSLIA 334 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~l~~ 334 (476)
+.-.|+.+.|.++-..+.+.. ..+......-..++...++.+.+...|++..+.++.. +..-..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 344556666665555555443 1121111111123344556666666666665533322 122233
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhc
Q 038936 335 GYAQNGMPDKALEYFELLLKS---GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARS 410 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 410 (476)
-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+.+.. +.+. ...+..-+.++...
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHH
Confidence 345667777777777776653 2334445566566666667777777666655552 2222 22233334455556
Q ss_pred CChhhHHHHHhhC
Q 038936 411 GRFHEAEDVISKM 423 (476)
Q Consensus 411 g~~~~A~~~~~~~ 423 (476)
++|++|.+-++++
T Consensus 335 e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 335 EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6667776666664
No 160
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=6.9e-06 Score=45.20 Aligned_cols=33 Identities=33% Similarity=0.751 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (476)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888776
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.08 E-value=1.1e-05 Score=52.84 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG-NLDLAKRAAEALFEIEP 460 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 460 (476)
+...|..++..+...|++++|+..|+++ ...| +...|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456778888888888888888888885 4444 5668888999999999 79999999999999988
No 162
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.04 E-value=1.2e-05 Score=46.84 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
.+|..+..+|...|++++|++.|+++++.+|+|+.++..|+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 3677889999999999999999999999999999999998753
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=9.8e-06 Score=44.21 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59 (476)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 59 (476)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.03 E-value=6.2e-06 Score=53.83 Aligned_cols=49 Identities=12% Similarity=0.338 Sum_probs=25.2
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..|++++|++.|+++... .|.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555566655555543 2334444555555555555555555555554
No 165
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.03 E-value=0.0017 Score=56.98 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=109.5
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRP-------DLVSWTSLIAGYAQ---NGMPDKALEYFELLLKSGTQPDHIVFVG 366 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 366 (476)
+...++-.|....+++..+++.+.+..+ ....-....-++.+ .|+.++|+.++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3345555677777888888777777652 12222334555666 7888999999988666666778888887
Q ss_pred HHHHHhc---------cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH----HHHH---hh-C------
Q 038936 367 VLTACTH---------AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA----EDVI---SK-M------ 423 (476)
Q Consensus 367 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~---~~-~------ 423 (476)
+++.|-. ....++|+..|.+.-+ +.|+...-..++..+.-.|...+. .++- .. .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7776532 2246788888887764 345554434445555555542222 2222 11 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 424 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
....+-..+.+++.+..-.|++++|.+.++++.++.|+....-.++
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 1223455667888889999999999999999999998765444333
No 166
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.014 Score=54.43 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHL 52 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 52 (476)
.|.+..|..+.......-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 456666666666555555555555555443
No 167
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.0003 Score=52.00 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIV 404 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 404 (476)
++..++..+.+.|++++|.+.|+++.+.... .....+..+..++...|++++|...++.+....+..+ ....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556667777888888888888888765311 1123555677778888888888888888876432221 245577777
Q ss_pred HHHHhcCChhhHHHHHhhC
Q 038936 405 DLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~ 423 (476)
.++.+.|++++|.+.++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 8888888888888888875
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.96 E-value=0.00016 Score=57.22 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHcCCCC
Q 038936 445 LDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~ 462 (476)
+++|...++++++.+|++
T Consensus 136 ~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 136 FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 446777777888888865
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00014 Score=51.12 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4556677778888888888888887753 233456666777788888888888888887753 3444457778888888
Q ss_pred hcCChhhHHHHHhhC
Q 038936 409 RSGRFHEAEDVISKM 423 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~ 423 (476)
..|++++|...+.+.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 888888888888764
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0063 Score=53.01 Aligned_cols=248 Identities=9% Similarity=-0.032 Sum_probs=140.7
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
.+.+..++.+|+..+..+. +.+..-|..-+..+...|+++++.--.+.-.+.... .+..+...-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 3556667777777777663 555566666666666777777776655554442110 122222333333333333333
Q ss_pred HHHHH---------------Hccc-----ccchHHHHH-HHHHHhcCCHHHHHHHHhcCCCCCcch-HHHHH--HHHHhc
Q 038936 81 QTLFD---------------EMQE-----RDVCSYNTM-ISGFTKGGSLEQARNLFDEMPQRDNFS-WTAMI--SGYVRY 136 (476)
Q Consensus 81 ~~~~~---------------~~~~-----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~--~~~~~~ 136 (476)
.+.++ .+.. |....|..+ ...+...|+.++|.+.--.+.+-|+.. +..++ .++.-.
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 33332 1111 111223222 334556788888877766666544432 33333 344456
Q ss_pred CChhHHHHHHHHHHhccCCCCCchH---HHHHHHH----------HHhhhhhhhHHHHHHHHHHcC---CCchHHHHHHH
Q 038936 137 NQPIEALDLYRMMQNFENSVSNKFT---LSSVLSA----------VSAIQCLRLGKEIHGYIMRTG---FDSDEVVWSAL 200 (476)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~---~~~ll~~----------~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 200 (476)
++.+.+...|++... ..|+... ....... ..+.|.+..|.+.|.+.+... ..++...|...
T Consensus 217 ~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 217 DNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred cchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 778888888888776 3344332 2222222 235667788888888777543 34556667777
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchhh---HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVVS---WTAMIGRYFQEGRREEGFALFSELIKSG 255 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 255 (476)
.....+.|+.++|+.--+...+-|..- +..-..++...++|++|.+-|++..+..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777888888888777776665442 2233455666677888887777776643
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.94 E-value=3.7e-05 Score=50.95 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=54.9
Q ss_pred HHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 404 VDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
..+|.+.+++++|.++++.+ ...| ++..|...+.++...|++++|.+.++++++..|+++......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45678889999999999886 4445 5667888888899999999999999999999998877665544
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.93 E-value=0.00067 Score=51.18 Aligned_cols=97 Identities=7% Similarity=-0.039 Sum_probs=64.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
.+....-.+..-+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|..+..- -+.++..+..+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~a 109 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence 334444445555667777777777777777643 223445566667777777778887777777753 24456667777
Q ss_pred HHHHHhcCChhhHHHHHhhC
Q 038936 404 VDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.++...|+.+.|.+-|+.+
T Consensus 110 g~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777778877777777764
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.91 E-value=0.00025 Score=59.89 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=68.2
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC----cHHHHHHHHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM-PMKP----DKFLWASLLG 437 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~ 437 (476)
|........+.|++++|+..|+.+...++-.+ .+..+..++.+|...|++++|...|+.+ ...| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44333333556777777777777776532111 1345667777778888888888777775 2222 2345566677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+...|++++|...|+++++..|++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 7778899999999999999999987644
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.87 E-value=0.015 Score=50.80 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=40.4
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 280 (476)
+.-+...|+...|.++-.+..-|+-.-|...+.+++..++|++-..+-. . +-++..|..++.+|...|+..+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCCHHHHH
Confidence 4444455555555555555555555555555566666665555443321 1 122355555555555555555555
Q ss_pred HHHHH
Q 038936 281 QVHGY 285 (476)
Q Consensus 281 ~~~~~ 285 (476)
.+...
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 54443
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0011 Score=55.28 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=89.1
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhhHHHHHhhC-
Q 038936 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG---RFHEAEDVISKM- 423 (476)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~- 423 (476)
-++.-+..+ +-|...|..|...|...|+.+.|...|.++.+- .++++..+..++.++..+. ...++..+|+++
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333334433 457789999999999999999999999999974 4556677888888766443 367888999996
Q ss_pred CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 424 PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 424 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
...| |+.....+...+...|++.+|...++.+++..|.+..
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 4444 6677788888899999999999999999998887654
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.016 Score=50.60 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=78.7
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 376 (476)
+.+..+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-..+... +-++.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445556666778888888888777778888888888888888888877665432 2234677788888888888
Q ss_pred hhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC
Q 038936 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 424 (476)
..+|..++.++ + +..-+..|.++|++.+|.+.--+.+
T Consensus 253 ~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 88887776541 1 2445677788888888877655544
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=3.3e-05 Score=40.97 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGT 357 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 357 (476)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888888877653
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00049 Score=61.56 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=66.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
...+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..+++++.. .+.+...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 345667778888888888887754 234556667777778888888888888888753 23456667777888888888
Q ss_pred hhhHHHHHhhC-CCCCc
Q 038936 413 FHEAEDVISKM-PMKPD 428 (476)
Q Consensus 413 ~~~A~~~~~~~-~~~p~ 428 (476)
+++|+..|+++ ...|+
T Consensus 86 ~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 88888888775 44444
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.77 E-value=0.00086 Score=53.25 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=62.3
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR--PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 368 (476)
...+..+...+...|++++|...|++..+ |+ ...+..+...+.+.|++++|+..+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44567777888888999999998887763 22 3567778888899999999999999888853 22445566667
Q ss_pred HHHhccCchhhHH
Q 038936 369 TACTHAGLVDKGL 381 (476)
Q Consensus 369 ~~~~~~~~~~~a~ 381 (476)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 7777777644433
No 180
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.77 E-value=0.044 Score=52.90 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=124.9
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH--
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD-- 79 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-- 79 (476)
+.+.|+.++|..+++... ..|..+...+-.+|.+.+..++|..+|+..... .|+......+..+|.+.+++.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999998874 567888889999999999999999999999885 4677788888889999887765
Q ss_pred --HHHHHHHcccccchHHHHHHHHHHhcC----------CHHHHHHHHhcCCCCCc--ch---HHHHHHHHHhcCChhHH
Q 038936 80 --AQTLFDEMQERDVCSYNTMISGFTKGG----------SLEQARNLFDEMPQRDN--FS---WTAMISGYVRYNQPIEA 142 (476)
Q Consensus 80 --A~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~a~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~a 142 (476)
|.+++....+ ++..+=++++.....- -..-|.+.++.+.+.+. .+ .......+...|.+++|
T Consensus 131 kaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 5556664433 3344444444443321 12335555555554431 11 11223445577899999
Q ss_pred HHHHH-HHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 038936 143 LDLYR-MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190 (476)
Q Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 190 (476)
++++. ...+ .-..-+...-+.-+..+...+.+.+..++-.++...|.
T Consensus 210 l~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 210 LEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 99994 3332 33333444445667777888899999999988888873
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.76 E-value=0.0013 Score=47.88 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=61.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLA 408 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 408 (476)
+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..++++....++-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677788888888888888887765442 3566677778888888888888888876532111 2223333455677
Q ss_pred hcCChhhHHHHHhh
Q 038936 409 RSGRFHEAEDVISK 422 (476)
Q Consensus 409 ~~g~~~~A~~~~~~ 422 (476)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776654
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.0022 Score=53.84 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHccc
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS---NCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
.++..+-.....+...|++++|...|+.+...-... .... -.+..++.+.+++++|...++...+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555555666677888888888888887753221 2222 3455667788888888888888765
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.0026 Score=48.83 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=89.1
Q ss_pred CCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CcHHHHH
Q 038936 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFV 365 (476)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 365 (476)
..|+...-..|.......|+..+|...|++... .|......+.++....+++..|...++++.+.+.. -++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 356666666777788888888888888877664 56667777777777888888888888887765310 0122344
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+.+.+...|.+.+|...|+.+.. ..|+...-......+.++|+.++|..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 566777778888888888877774 366666666677777788877776654444
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.74 E-value=0.027 Score=49.86 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhH-HHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY-ACIV 404 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~ 404 (476)
.+|...+..-.+..-.+.|..+|-+..+.| +.++...++.++..+ ..|+..-|..+|+--... -||...| ....
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 456677777778888899999999999988 567777888887754 468889999999877754 3444444 5667
Q ss_pred HHHHhcCChhhHHHHHhhC--CCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 405 DLLARSGRFHEAEDVISKM--PMKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
..+.+-++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.++.|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7888999999999999965 22222 4588888887788899999999999999999875
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.74 E-value=0.00063 Score=53.82 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP--DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
...|..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..++++... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3456667777778888888888888887653222 1246777778888888888888888888753 23334455566
Q ss_pred HHHHH-------hcCChhhHHHHHhh
Q 038936 404 VDLLA-------RSGRFHEAEDVISK 422 (476)
Q Consensus 404 ~~~~~-------~~g~~~~A~~~~~~ 422 (476)
+.++. +.|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66665 66776655555443
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.00092 Score=60.02 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=72.9
Q ss_pred CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh--CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----CChhhH
Q 038936 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----PDLVSW 329 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 329 (476)
.+.+......+++.+....+.+.+..++...... ....-+.+..++++.|...|..+.++.+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666666665544 1222233445666777777777777666665443 677777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
|.++..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766666555656655555554443
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00065 Score=60.96 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=89.6
Q ss_pred CCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 038936 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262 (476)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (476)
+.+.+......+++.+....+.+.+..++-+.... -+.+..++++.|.+.|..+.++.++..=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33555556666777777777777787777776442 123556888888888888888888888888888888888
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
++.+|..+.+.|++..|.++...|...+...++.++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666666665555555544
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0034 Score=51.11 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc----CCCCChhhHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH----GLTYTADHYACI 403 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l 403 (476)
+-+.++..+.-.|.+.-.+..+.+.++...+.++.....+++.-.+.||.+.|...|++..+.. +......+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445666666777888888888888887666677777788888888888888888888665432 222333333444
Q ss_pred HHHHHhcCChhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 404 VDLLARSGRFHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
...+.-+.++.+|...++++. .+.++...+.-..+....|+..+|++.++.+.+..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 455667778888888888863 23356666776666777788888998888888888864
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.0028 Score=59.45 Aligned_cols=35 Identities=3% Similarity=-0.074 Sum_probs=20.3
Q ss_pred CCCCHhhHHHHHHHHhc-----cccHHHHHHHHHHHHHhC
Q 038936 256 IRPNAFTFAGVLNACAD-----HAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~ 290 (476)
.+.+...|...+.+... .++.+.|..+|++..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld 372 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE 372 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 34555666666665332 223566777777776663
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00021 Score=46.53 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=39.7
Q ss_pred HhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 408 ARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
.+.|++++|++.|+++ ...| +...+..++.+|.+.|++++|.+.++++...+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3566677777777665 3333 55566666666777777777777777777777766555554443
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=6.3e-05 Score=39.87 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSG 255 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 255 (476)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666665554
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.66 E-value=0.032 Score=48.45 Aligned_cols=278 Identities=13% Similarity=0.093 Sum_probs=160.0
Q ss_pred hhhhhhhHHHHHHHHH---HcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-chh--hHHHHHHHHHhcCChhHH
Q 038936 171 AIQCLRLGKEIHGYIM---RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVV--SWTAMIGRYFQEGRREEG 244 (476)
Q Consensus 171 ~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~l~~~~~~~~~~~~a 244 (476)
..|+-..+.++-.+.. ....+|=++... ..+-.-.|+++.|.+-|+.|... ... -...|.-...+.|+.+.|
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLe--AQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLE--AQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHH--HHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 4556666666655433 222223222211 23334468888998888888652 211 122333344567888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC-CCCchhhH--HHHHHHh---hhcCChhhHHHHH
Q 038936 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAA--SALVHMY---SKCGNVENSKKVF 318 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~~~~~~a~~~~ 318 (476)
..+-+..-..- +.-.......+...|..|+++.|+++++.-.... +.++..-- ..|+.+- .-.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77777765542 3334667778888888899999988887765542 23332211 1121111 1112344444444
Q ss_pred ccCCC--CChhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 319 NGMPR--PDLVS-WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 319 ~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
.+..+ ||... -..-..++.+.|+..++-.+++.+-+....|+.. . +....+.|+ .++.-+++...--.+.|
T Consensus 253 ~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk~ 326 (531)
T COG3898 253 LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcCc
Confidence 44433 44332 2233456888888888888888888865444432 1 222344554 33444444433223444
Q ss_pred -ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 038936 396 -TADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIH-GNLDLAKRAAEALFE 457 (476)
Q Consensus 396 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 457 (476)
+.+....+.++-...|++..|..--+.. ...|....|.-+...-... ||-.++.+.+-++++
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4455666777777888888877766664 5567777777776665444 888888888888776
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.0051 Score=51.65 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=31.5
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcccchh------hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 200 LSDMYGKCGSINEARQIFDKMVDRDVV------SWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
....+...|++++|.+.|+.+....+. ..-.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344445566777777777666442211 1223455666677777777777766664
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.64 E-value=0.0012 Score=46.14 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCC-CCCchHHHHHHHHHHhhh--------hhhhHHHHHHHHHHcCCCchHHHH
Q 038936 127 TAMISGYVRYNQPIEALDLYRMMQNFENS-VSNKFTLSSVLSAVSAIQ--------CLRLGKEIHGYIMRTGFDSDEVVW 197 (476)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 197 (476)
...|..+...+++.....+|+.+++ .++ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 3455666777999999999999998 777 999999999999887553 345577889999999999999999
Q ss_pred HHHHHHHHc
Q 038936 198 SALSDMYGK 206 (476)
Q Consensus 198 ~~l~~~~~~ 206 (476)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.0013 Score=45.97 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccc--------cHHHHHHHHHHHHHhCCCCchhhHH
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGI-RPNAFTFAGVLNACADHA--------AEELGKQVHGYMTRIGYDPYSFAAS 299 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (476)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445666667999999999999999999 899999999998876532 3456777888898888999999999
Q ss_pred HHHHHhhh
Q 038936 300 ALVHMYSK 307 (476)
Q Consensus 300 ~l~~~~~~ 307 (476)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00095 Score=55.46 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=67.5
Q ss_pred HHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchh
Q 038936 303 HMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVD 378 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 378 (476)
.-+.+.+++++|+..|.+.++ .|.+.|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 345667778888888877765 3566677777778888888888887777777 33443 47777888888888888
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADHYAC 402 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~~ 402 (476)
+|++.|++.++ +.|+-.+|..
T Consensus 167 ~A~~aykKaLe---ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE---LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc---cCCCcHHHHH
Confidence 88888877773 5666655543
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.003 Score=54.51 Aligned_cols=124 Identities=14% Similarity=0.191 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHccc---ccchHHHHHHHHH
Q 038936 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK-CGNISDAQTLFDEMQE---RDVCSYNTMISGF 102 (476)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 102 (476)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+ .+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888999999999999999999998653 2244555555444334 5667779999999875 5677888888999
Q ss_pred HhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 103 TKGGSLEQARNLFDEMPQR------DNFSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
.+.|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988763 224688888888888888888888888876
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.023 Score=43.89 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=78.2
Q ss_pred CCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHH
Q 038936 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTS 331 (476)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 331 (476)
.|+...-..+..++...|+..+|...|++...--+..|......+.++....+++..|...++++.+ ..+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4454444555556666666666666666655544455555555666666666666666666665543 12334445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+...+...|.+..|..-|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667788888888888888888885 4554443334445567777666655444443
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.54 E-value=0.032 Score=51.70 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=37.8
Q ss_pred hhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+. ..++......+++++|..+-++
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 333344444444444455555555555666667777777766432 1345556677777777766543
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.49 E-value=0.00022 Score=47.87 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-------C-CCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-------P-MKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
++..++.+|...|++++|+..|+++ + ..|+ ..++..++.++...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666553 1 1133 446778888888888888888888888764
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0022 Score=55.62 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HcCCC-CcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLL----KSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTAD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 398 (476)
.|..|...|.-.|+++.|+..-+.=+ +-|-+ .....+..+..++.-.|+++.|.+.|+.... -..-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666778887776544322 22211 1223566777888888888888888876542 111122344
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-------C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-------P-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
+..+|+..|.-..++++|+.++.+- . ..-....+.+++.++...|..++|+...+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888887663 1 112455777888888888999998888777766
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0027 Score=55.17 Aligned_cols=269 Identities=10% Similarity=0.008 Sum_probs=136.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHcc-------c--ccchHHHHHHH
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGV----FISNCLLDMYAKCGNISDAQTLFDEMQ-------E--RDVCSYNTMIS 100 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~l~~ 100 (476)
.-+++.|+......+|+..++.|.. |. .+|..|..+|.-.+++.+|++.-..=. . ....+...|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578899999999999999998854 43 456667777777888888887643311 1 12234444555
Q ss_pred HHHhcCCHHHHHHHHhcCCC-------C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 101 GFTKGGSLEQARNLFDEMPQ-------R--DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 101 ~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
.+--.|.+++|.-.-.+-.. + ....+..+...|...|+.-.... .+..+..++..
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~-----pee~g~f~~ev----------- 167 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA-----PEEKGAFNAEV----------- 167 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC-----hhhcccccHHH-----------
Confidence 55666777777654333221 1 22334445555544432110000 00001111100
Q ss_pred hhhhhhHHHHHHHH----HHcCCC-chHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---------cchhhHHHHHHHHHh
Q 038936 172 IQCLRLGKEIHGYI----MRTGFD-SDEVVWSALSDMYGKCGSINEARQIFDKMVD---------RDVVSWTAMIGRYFQ 237 (476)
Q Consensus 172 ~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~ 237 (476)
...++.|.++|.+- .+.|-. ..-..|..|.+.|.-.|+++.|+..-+.-.. ..-..+..+..+++-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 01122222222221 111100 1123455555556666677777665543311 112345666677777
Q ss_pred cCChhHHHHHHHHHHH----cC-CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh----C-CCCchhhHHHHHHHhhh
Q 038936 238 EGRREEGFALFSELIK----SG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI----G-YDPYSFAASALVHMYSK 307 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~ 307 (476)
.|+++.|.+.|+.... .| -.....+...+.+.|.-..+++.|+.++.+-... + ..-....+.+|..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 7777777777665432 22 1223344555666666666677777666543222 1 11223455566667776
Q ss_pred cCChhhHHHHHc
Q 038936 308 CGNVENSKKVFN 319 (476)
Q Consensus 308 ~~~~~~a~~~~~ 319 (476)
.|..++|+.+.+
T Consensus 328 lg~h~kAl~fae 339 (639)
T KOG1130|consen 328 LGEHRKALYFAE 339 (639)
T ss_pred hhhHHHHHHHHH
Confidence 776666665544
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.0011 Score=43.25 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-chhhHHHHHHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKE 389 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 389 (476)
++..|..+...+...|++++|+..|++.++.. +.+...+..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777777777777777777754 234556677777777777 67777777777764
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.45 E-value=0.021 Score=52.89 Aligned_cols=88 Identities=11% Similarity=0.143 Sum_probs=60.2
Q ss_pred HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChh----------
Q 038936 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLV---------- 327 (476)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~---------- 327 (476)
..+...+...+-+...+..|.++|..|-+. ..+++++...++|++|..+-++..+ +++.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344444555555666677777777776544 3577788888888888888887775 3332
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 328 -SWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 328 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
-+...-++|.+.|+..+|..+++++....
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 23334567888999999999999886653
No 205
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00072 Score=43.42 Aligned_cols=57 Identities=23% Similarity=0.235 Sum_probs=34.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
...+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666666666653 224455556666666666666666666666543
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.44 E-value=0.0041 Score=45.26 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=30.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNA--FTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455566666666666666665543331 23333444455556666666666555443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0022 Score=54.22 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYAC 402 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 402 (476)
.|...+..+.+.|++++|+..|+.+++.. |+. ..+..++.+|...|++++|...|+.+...+...| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 45554544566788999999999988854 433 4667788888999999999999999987543222 3555666
Q ss_pred HHHHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 403 IVDLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
++.++...|+.++|.++++++ ...|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 788888899999999999886 3445433
No 208
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0023 Score=52.89 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=62.7
Q ss_pred HhccCchhhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCC-cHHHHHHHHHHHHhcCC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLT-YTADHYACIVDLLARSGRFHEAEDVISKM----PMKP-DKFLWASLLGGCRIHGN 444 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 444 (476)
+.+.|++..|.+.|...+..+.-. -....+..|++++...|++++|..+|..+ +..| -+..+..++.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 445566777777777776542211 12344566777777777777777777664 2223 23466667777777888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHH
Q 038936 445 LDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.++|...|+++++..|+.+.+-.
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888888888888887765544
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.12 Score=48.64 Aligned_cols=361 Identities=13% Similarity=0.058 Sum_probs=189.2
Q ss_pred hHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHHHH----------HHHHHhcCChhHHHHH
Q 038936 77 ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-DNFSWTAM----------ISGYVRYNQPIEALDL 145 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l----------~~~~~~~~~~~~a~~~ 145 (476)
.++|.+..+. .|.+..|..+.......-.++.|...|-+...- .+....-| ...-.--|++++|.++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4455555444 466778888888877777777777777665531 11110000 1112234888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCC----chHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Q 038936 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD----SDEVVWSALSDMYGKCGSINEARQIFDKMV 221 (476)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 221 (476)
|-++-+ -...+....+.|++-.+.++++. -|-. .-...++.+...+.....|++|.+.|..-.
T Consensus 757 yld~dr----------rDLAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 757 YLDADR----------RDLAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhccch----------hhhhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 877754 12334445566676666655532 1111 123467777777777778888877776543
Q ss_pred ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 222 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
.. ...+.++.+..++++-..+-.. ++.+....-.+...+.+.|.-++|.+.+-+. + .| ...
T Consensus 824 ~~-----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaA 884 (1189)
T KOG2041|consen 824 DT-----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAA 884 (1189)
T ss_pred ch-----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHH
Confidence 21 2235555555555554444333 2445555666677777778777777665332 2 11 134
Q ss_pred HHHhhhcCChhhHHHHHccCCCCChhhHHH--------------HHHHHHhcCChHHHHHHHHHHHHc----CCCCcHHH
Q 038936 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTS--------------LIAGYAQNGMPDKALEYFELLLKS----GTQPDHIV 363 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~ 363 (476)
+..+...++|.+|.++-+...-|.+.+.-+ -|..+.+.|+.-.|.+++.+|.+. +.+|-..-
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~K 964 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLK 964 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHH
Confidence 556677777888887777666544433221 233345556665666666666442 33332211
Q ss_pred HHHHHHHH---------------hccCchhhHHHHHHHHHHhcC------C--CCChhhHHHHHHHHHhcCChhhHHHHH
Q 038936 364 FVGVLTAC---------------THAGLVDKGLQYFHSIKEKHG------L--TYTADHYACIVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 364 ~~~l~~~~---------------~~~~~~~~a~~~~~~~~~~~~------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 420 (476)
-..++.+. ...|..++|..+++...-... . -.....+..+++--...|..+.|++.-
T Consensus 965 klYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 965 KLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 11111111 123444555544333221100 0 011122233444455667777777654
Q ss_pred hhCC----CCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 421 SKMP----MKPDKFLWASLLGGCRIH---GNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 421 ~~~~----~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
-.++ .-|....|..+..+-+.. |--.+|.--++..-++......-|..|+.
T Consensus 1045 l~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~ 1102 (1189)
T KOG2041|consen 1045 LILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAF 1102 (1189)
T ss_pred hhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 4442 224444555444433322 55666666666655565555556666653
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.011 Score=48.30 Aligned_cols=131 Identities=9% Similarity=0.049 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHH-----
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA----- 300 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 300 (476)
...+.++......|.+.-....+++.++...+.++.....++....+.||.+.|...++...+..-..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777888888899999998877666778888888888899999999999997776543443333333
Q ss_pred HHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
....|.-.+++..|...+.++.. .++...|.-.-+..-.|+...|++.++.|...-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33446666778888888877775 344455555555666778888888888888753
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.29 E-value=0.01 Score=44.05 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=59.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
.....+.|++++|++.|+.+...-.. -....-..++.+|.+.+++++|...+++.++.+...|++ -|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 34455666677777766666654211 112344456666666677777776666666554443432 122222232222
Q ss_pred CChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 411 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
...+....-+- ..+ ...+....|...|++.++..|++..+
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 11111111111 111 11123568899999999999987543
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0043 Score=54.09 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhC-C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 400 YACIVDLLARSGRFHEAEDVISKM-P-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+..++-++.+.+++.+|++.-.+. . .++|+...-.-+.++...|+++.|+..|+++++++|+|..+...|.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 344444455555555555544443 2 1223444444444555555555555555555555555544444443
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.22 E-value=0.02 Score=46.78 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=25.4
Q ss_pred hhhcCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 5 LCNQRRLKEALQILHQIS------HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS 55 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 55 (476)
+...|++.+|++.|+.+. +--+.+.-.++.++.+.|+++.|...++..++.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666666666552 112223334445555666666666666665553
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.20 E-value=0.18 Score=46.67 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=113.3
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDL---VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (476)
...+|...+.--...|+.+.+..+|+.+.-|-. ..|-..+.-....|+.+-|..++....+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 445677777777888888888888888776532 34555555555558888888777776665433333322222223
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH---HHHhhC-CCCCcHHH----HHHHHHH-HHh
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE---DVISKM-PMKPDKFL----WASLLGG-CRI 441 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~----~~~l~~~-~~~ 441 (476)
+...|+++.|..+++.+.++ .+--...-..-+....+.|..+.+. .++... +.+-+... +....+- +.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 45678999999999999876 3223333344455667888888877 444443 22222221 2222221 334
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.++.+.|..++.++.+..|++...|..+..+.
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 58899999999999999999988888777654
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.18 E-value=0.14 Score=44.76 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=80.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHccc-ccch--HHHHHHHH
Q 038936 29 YSSLIQFCR--QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY--AKCGNISDAQTLFDEMQE-RDVC--SYNTMISG 101 (476)
Q Consensus 29 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~ 101 (476)
|.+|-.++. -.|+-..|.+.-.+..+. +.-|......++.+- .-.|+++.|.+-|+.|.. |... -...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 444444443 346666676665554332 233555555555433 346888888888888875 3221 12233333
Q ss_pred HHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc
Q 038936 102 FTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159 (476)
Q Consensus 102 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 159 (476)
--+.|+.+.|...-+..-.. -+..+.+.+...+..|+|+.|+++++.-....-+.++.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 45678888888877766543 34567788888888888888888888777644444544
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.23 Score=47.27 Aligned_cols=321 Identities=12% Similarity=0.074 Sum_probs=181.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHccc--ccchHHHHHHHHHHhc
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG---NISDAQTLFDEMQE--RDVCSYNTMISGFTKG 105 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 105 (476)
.+++-+...+.+..|.++-..+...-... ...|......+.+.. +-+.+..+-+++.. ....+|..+..-...+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 35666777788888888877764432222 567777777777663 22333344444444 3456788888888899
Q ss_pred CCHHHHHHHHhcCCCC--------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhh
Q 038936 106 GSLEQARNLFDEMPQR--------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 177 (476)
|+++-|..+++.=+.. +..-+..-+.-....|+.+-...++..+.+. .+...+ .....+.-.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----~~~s~l------~~~l~~~p~ 590 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----LNRSSL------FMTLRNQPL 590 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH----HHHHHH------HHHHHhchh
Confidence 9999999998764432 2233455556666777777777777666541 111111 112223344
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHH--hh-----cccchhhHHHHHHHHHhcCChh---H----
Q 038936 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD--KM-----VDRDVVSWTAMIGRYFQEGRRE---E---- 243 (476)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~-----~~~~~~~~~~l~~~~~~~~~~~---~---- 243 (476)
|..+|.+..+..-. ..+-..|- .++-.++...|. .. .++-..........+.+..... +
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44455444432100 01111222 222222222211 10 0111111222233333333211 1
Q ss_pred ---HHHHHHHHHH-cCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHc
Q 038936 244 ---GFALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319 (476)
Q Consensus 244 ---a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (476)
-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -|+-..|..-+.++...++|++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 1112222211 1323344455555666777788888888766654 5777788888888888999988877766
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.... +.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.+.-
T Consensus 740 skks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 6554 67777888899999999999888765322 11 3566778888888877653
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.18 E-value=0.038 Score=45.16 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=34.0
Q ss_pred HHHHHHcCCCHHHHHHHHHhhccc--c----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 200 LSDMYGKCGSINEARQIFDKMVDR--D----VVSWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
....+...|++.+|.+.|+.+... + ....-.++.++.+.|+++.|...+++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444556677777777777777542 1 123445566777777777777777777664
No 218
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.15 E-value=0.001 Score=36.02 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.+|..++.++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468889999999999999999999999999974
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.18 Score=48.55 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352 (476)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 352 (476)
-++..+.+..+.+.+..+.+...+.++..|..++..+.+.+..+...+...+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 35666777778888888888887788889999999999888665544444443
No 220
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.0078 Score=47.93 Aligned_cols=89 Identities=13% Similarity=0.234 Sum_probs=61.9
Q ss_pred ccchhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----------------cccHHHHH
Q 038936 222 DRDVVSWTAMIGRYFQ-----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD----------------HAAEELGK 280 (476)
Q Consensus 222 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~ 280 (476)
..+-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+-+ ..+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444555555555543 35555666667777777777777777777776543 23456788
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
.++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888899888988888888888888876653
No 221
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.14 E-value=0.0015 Score=35.30 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
..|..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357788889999999999999999999999976
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.025 Score=47.61 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCcHHHHH
Q 038936 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNG---MPDKALEYFELLLKSGTQPDHIVFV 365 (476)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~ 365 (476)
|.|...|-.|...|...|+++.|..-|....+ +++..+..+..++.... ...++..+|++++... +.|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 44445555555555555555555555544442 33444444444322211 2244555555555532 22333444
Q ss_pred HHHHHHhccCchhhHHHHHHHHHH
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444455555555555555555554
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.01 E-value=0.04 Score=50.63 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=93.4
Q ss_pred HHHHhcCChhHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHH
Q 038936 34 QFCRQNRALEEGKKVHSHLK-SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
+...-+++++.+.+....-. -..+ +....+.++..+.+.|..+.|+++... | ..-.....+.|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---~-----~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD---P-----DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----H-----HHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---h-----HHHhHHHHhcCCHHHHH
Confidence 34455677777666654111 1112 244466777777788888888876544 1 23355567788888888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCc
Q 038936 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192 (476)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 192 (476)
++.+... ++..|..|.+...+.|+++-|.+.|.+... +..++-.+...|+.+...++.+.....|
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 8877665 556788888888888888888888887765 5666666666777666666666666555
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
-++....++.-.|+.++..+++.+.
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1333334444456666666665443
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.039 Score=42.40 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH-----hCCCCchhhH
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-----IGYDPYSFAA 298 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 298 (476)
....++..+...|+++.|..+...+.... +.+...+..+|.++...|+...|.+.|+.+.+ .|++|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556677778899999999999888875 66788888999999999999999988887643 3788877654
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.0041 Score=41.00 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
..|.+.+++++|+++++.+...+ +.+...+.....++...|++++|.+.++++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777776653 224445555666666777777777777776654
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.96 E-value=0.026 Score=43.08 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=58.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
-+...|++++|..+|+-+.-.+. -+..-+..|..++-..+++++|+..|.....-. ..|+..+...+.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHH
Confidence 35567777777777777666442 244455666666677777777777777665431 233444555677777777777
Q ss_pred hHHHHHhhCCCCCc
Q 038936 415 EAEDVISKMPMKPD 428 (476)
Q Consensus 415 ~A~~~~~~~~~~p~ 428 (476)
.|+..|+.+..+|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777777644444
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.92 E-value=0.015 Score=42.87 Aligned_cols=52 Identities=8% Similarity=0.166 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
..|+..++.+++.+|+..|++..|.++++...+.++++.+..+|..|.+-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888887777778877765443
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=96.88 E-value=0.013 Score=44.64 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=74.2
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCC
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGN 444 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 444 (476)
...-+...|++++|..+|+-+..- -+-+..-+..|+.++-..+++++|+..|..+ -...|+...-..+.++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 444567899999999999988863 2445666888999999999999999999875 122345556667888999999
Q ss_pred hHHHHHHHHHHHHcCCCCc
Q 038936 445 LDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~~ 463 (476)
.+.|...|+.+++ .|.++
T Consensus 121 ~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHh-CcchH
Confidence 9999999999998 56554
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.85 E-value=0.014 Score=42.08 Aligned_cols=89 Identities=22% Similarity=0.126 Sum_probs=46.2
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCC--cHHHHHHHHHHHHhcCC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKP--DKFLWASLLGGCRIHGN 444 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~ 444 (476)
....|+.+.|++.|.+...- .|.....|+.-+.++.-+|+.++|++-++++ +.+. --..|..-+..|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34556666666666655542 2334445555666666666666666555553 1110 11123333333556666
Q ss_pred hHHHHHHHHHHHHcCCC
Q 038936 445 LDLAKRAAEALFEIEPE 461 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~ 461 (476)
-+.|..-|+.+-++.++
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 66666666666655543
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.57 Score=45.41 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.++..+....+.+.+..+.+..+.. ++..|..++..+.+.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3455566667777777777777533 677777777777777766665555555554
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.78 E-value=0.26 Score=41.39 Aligned_cols=162 Identities=18% Similarity=0.167 Sum_probs=100.9
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCC--CCh-hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHH
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPR--PDL-VSWTSLIA-GYAQNGMPDKALEYFELLLKSGT--QPDHIVFVGVLTAC 371 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 371 (476)
+......+...+++..+...+..... ++. ........ .+...|+++.|...+.+...... ......+......+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 33333444444445555555444443 111 11222222 67788888888888888755221 11233344444446
Q ss_pred hccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHH
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 448 (476)
...++.+.+...+.+.... .+. ....+..+...+...++++.|...+... ...|+ ...+......+...|+.+.+
T Consensus 178 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 178 EALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 6778888888888888864 233 3667778888888888888888888875 33444 44555555555566778999
Q ss_pred HHHHHHHHHcCCC
Q 038936 449 KRAAEALFEIEPE 461 (476)
Q Consensus 449 ~~~~~~~~~~~p~ 461 (476)
...+++.++..|.
T Consensus 256 ~~~~~~~~~~~~~ 268 (291)
T COG0457 256 LEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999988886
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.77 E-value=0.016 Score=43.13 Aligned_cols=54 Identities=7% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
....+.|++++|++.|+.+..++...+ .......++.+|.+.|++++|...+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 334455666666666666655433322 122334455555555555555555555
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.77 E-value=0.0051 Score=54.96 Aligned_cols=96 Identities=14% Similarity=-0.018 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHH
Q 038936 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA----DHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWA 433 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 433 (476)
.+...+..+..+|...|++++|+..|++.++. .|+. ..|..++.+|...|++++|++.++++ ...+ ..|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn--~~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN--LKFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--hhHH
Confidence 35567888889999999999999999998864 5553 34888999999999999999999886 3211 1222
Q ss_pred HHHH--HHHhcCChHHHHHHHHHHHHcC
Q 038936 434 SLLG--GCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 434 ~l~~--~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.+.. .+....+.++..++++.+.+..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 1111 0112233446666666666644
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0039 Score=41.75 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC---Cc-HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQ---PD-HIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+++.+...|...|++++|+..|++..+.. .. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356667777777777777777777766430 11 11 34567777777888888888888777654
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.76 E-value=0.0015 Score=35.24 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 451 AAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 451 ~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.|+++++++|+|+.+|.+||.+|..
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999875
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.75 E-value=0.25 Score=44.89 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCC--CCcH--HHHHHHHHHHHhc
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM--KPDK--FLWASLLGGCRIH 442 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~~~~~~~ 442 (476)
+..++.+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+-.. -|.. ..|+..+......
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 34444445555555555555543322112233444455555555555555555554421 1221 1333322222212
Q ss_pred CC---------------hHHHHHHHHHHHHcCCCCch
Q 038936 443 GN---------------LDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 443 g~---------------~~~A~~~~~~~~~~~p~~~~ 464 (476)
|+ -..|.+.+.++.+.+|.-+.
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 22 13467889999999996553
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.017 Score=47.87 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIV 404 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 404 (476)
.|+.-+.. .+.|++..|...|...++.... -....+.+|..++...|+++.|...|..+...++-.|. ++.+..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 4667799999999999986421 11235667999999999999999999999987665554 47889999
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
.+..+.|+.++|..+|+++ ..-|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999987 3345433
No 238
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.72 E-value=0.024 Score=45.24 Aligned_cols=89 Identities=10% Similarity=0.222 Sum_probs=67.1
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc----------------CchhhHH
Q 038936 323 RPDLVSWTSLIAGYAQ-----NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA----------------GLVDKGL 381 (476)
Q Consensus 323 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 381 (476)
..+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3556666666666654 356666677788888888888899999888887542 2446788
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
+++++|... |+.||.+++..+++++++.+.
T Consensus 124 ~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 999999865 999999999999988876654
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.69 E-value=0.85 Score=46.16 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=49.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
+.+|...|+|.+|+.+..++... -+.. +-..|...+..++++-+|-++..+.... ....+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhH
Confidence 34566677888887777665431 1222 1245666677777777777776655532 23344566777
Q ss_pred CChhhHHHHHhhCC
Q 038936 411 GRFHEAEDVISKMP 424 (476)
Q Consensus 411 g~~~~A~~~~~~~~ 424 (476)
..+++|.++.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 77888887776653
No 240
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.65 E-value=0.46 Score=42.59 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=54.9
Q ss_pred hhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 327 VSWTSLIAG--YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 327 ~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
..-|.+..+ +..+|++.++.-.-..+.+ +.|++.+|..++-+.....++++|.+++. .+||+..+++.-
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~------~LP~n~~~~dsk 531 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ------KLPPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH------hCCCchhhHHHH
Confidence 345555555 6678999999887777777 78999999999999999999999999985 467887777653
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.65 E-value=0.45 Score=42.36 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhccc-------chhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHhhHHH
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVDR-------DVVSWTAMIGRYFQ---EGRREEGFALFSELIKSGIRPNAFTFAG 265 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 265 (476)
+...++-+|....+++..+++++.+... ....-....-++.+ .|+.++|..++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3345555688888888888888888553 12222334556666 7888888888888666655777777777
Q ss_pred HHHHH
Q 038936 266 VLNAC 270 (476)
Q Consensus 266 l~~~~ 270 (476)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
No 242
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.65 E-value=0.49 Score=42.78 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=84.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCCCCChhh
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP---DHIVFVGVLTACTHAGLVDKGLQYFHSIKEK-HGLTYTADH 399 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 399 (476)
....+|..+...+.+.|+++.|...+.++...+..+ .+.....-++.....|+..+|+..++..... .....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678888888999999999999998887754221 2334444556677788889999888887762 111111111
Q ss_pred HHHHHHHHHhcCChhhHHHH-HhhCCCCCcHHHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 400 YACIVDLLARSGRFHEAEDV-ISKMPMKPDKFLWASLLGGCRIH------GNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
...+...+.. ..+..... ........-...+..++.-.... +..+++...|+++.++.|+...+|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000112333333333333 788999999999999999988899888877
Q ss_pred hh
Q 038936 473 YA 474 (476)
Q Consensus 473 y~ 474 (476)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 64
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.63 E-value=0.029 Score=43.13 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChhhH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTADHY 400 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 400 (476)
....++..+...|++++|+...+.+.... +.+...+..++.++...|+...|.+.|+++.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34445666777888888888888888764 34666778888888888888888888776543 34777776554
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.16 Score=41.31 Aligned_cols=25 Identities=12% Similarity=-0.039 Sum_probs=16.9
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHH
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
|.-...+|...+++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444556777778888877776665
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.19 Score=45.43 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=44.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777777777777777777777777774 4553 2466777777777777777777777775
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.46 E-value=0.26 Score=46.16 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhhHH-HHHHHhhhcCChhhHHHHHccCCC-------CChhhHHHHHHHHHhcCChHH
Q 038936 273 HAAEELGKQVHGYMTRIGYDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMPR-------PDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 273 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ 344 (476)
..+.+.+.+++..+.+. -|+...+. .-.+.+...|++++|++.|+.... -....+--+.-.+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888776 45544443 334677888999999999987553 122345556777888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH-hccCch-------hhHHHHHHHHHH
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTAC-THAGLV-------DKGLQYFHSIKE 389 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-------~~a~~~~~~~~~ 389 (476)
|...|.++.+.+ .-+..+|..+..+| ...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999864 34555666555544 567777 788888877653
No 247
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.2 Score=39.36 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhccCchhhHHHHHHHHHHhcCCCCCh----hhHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV--GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA----DHYA 401 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 401 (476)
.|..++.... .+.+ +.....+++...+.......+. .+...+...|++++|...++..... +.|. ..-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444444433 3333 5555666666653333333333 3455678899999999999877742 2222 1223
Q ss_pred HHHHHHHhcCChhhHHHHHhhCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 402 CIVDLLARSGRFHEAEDVISKMPMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.|+......|.+++|+..++....+. .......-+..+...|+.++|...|+++++.++++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 56778889999999999999875332 33344556677889999999999999999987644
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.33 E-value=0.32 Score=36.99 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
....++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+..++++. ..+.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34456677777778888888888888776 356667777888877653 3344444432 11222344467777
Q ss_pred HhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH-GNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.+.+.++++.-++.+++...+ .+..+... ++++.|++.+++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 778888888888888763222 22223333 778888877775 345667777766554
No 249
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.32 E-value=0.0081 Score=32.33 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+|..++..+...|++++|...|+++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888999999999999999999999954
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.037 Score=48.49 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=50.7
Q ss_pred HHhhhcCChhhHHHHHccCCC------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH
Q 038936 303 HMYSKCGNVENSKKVFNGMPR------------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 364 (476)
..|.+.|++..|..-|+++.. .-..+++.+..+|.+.+++..|+..-.+.+..+ ++|...+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 456666666666666555321 112345556666666666666666666666654 3455555
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHH
Q 038936 365 VGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 365 ~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..-..++...|+++.|+..|+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5556666666666666666666664
No 251
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.16 E-value=0.62 Score=38.70 Aligned_cols=241 Identities=16% Similarity=0.223 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHhhHHHHHHHHhcccc
Q 038936 208 GSINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGRREEGFALFSELIKS---GI--RPNAFTFAGVLNACADHAA 275 (476)
Q Consensus 208 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 275 (476)
.++++|+.-|+.+.+- ...+...++..+.+.+++++....+.++..- .+ .-+..+.+.++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3566666666665331 1223445566677777777776666665421 11 2344566666666655555
Q ss_pred HHHHHHHHHHHHHh-----CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---------------CChhhHHHHHHH
Q 038936 276 EELGKQVHGYMTRI-----GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---------------PDLVSWTSLIAG 335 (476)
Q Consensus 276 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~ 335 (476)
.+....+++.-.+. +-...-.+-+.|...|...+++.+..++++++.. .-...|..-++.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55444444332221 1122223345677788888888887777776642 113467777888
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHH-----hccCchhhHHHHHHHHHHhc---CCCCChh--hHHHHH
Q 038936 336 YAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTAC-----THAGLVDKGLQYFHSIKEKH---GLTYTAD--HYACIV 404 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~~--~~~~l~ 404 (476)
|...++-.+-..++++.+.-. .-|.+.... .++-| .+.|.+++|-.-|-++...+ |.+-... -|..|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888776532 234444443 44444 45678877765444433321 2222222 244566
Q ss_pred HHHHhcCC----hhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038936 405 DLLARSGR----FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454 (476)
Q Consensus 405 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (476)
..+.+.|- .++|. -.+..|.......++.+|.. ++..+.+++++.
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 66666662 11111 11344666677788877654 445555444444
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.16 E-value=0.18 Score=43.67 Aligned_cols=149 Identities=12% Similarity=0.046 Sum_probs=67.6
Q ss_pred HcCCCHHHHHHHHHhhcccc------hhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCH---hhHHHHHHHHhcc
Q 038936 205 GKCGSINEARQIFDKMVDRD------VVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPNA---FTFAGVLNACADH 273 (476)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~ 273 (476)
....+.++|+..+......- ..++..+..+.++.|.+++++..--.-+.. ....+. ..|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778887777665432 124455566667777766655432211110 011111 1233333333344
Q ss_pred ccHHHHHHHHHHHHHh-CCCC---chhhHHHHHHHhhhcCChhhHHHHHccCCC-----C----ChhhHHHHHHHHHhcC
Q 038936 274 AAEELGKQVHGYMTRI-GYDP---YSFAASALVHMYSKCGNVENSKKVFNGMPR-----P----DLVSWTSLIAGYAQNG 340 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~ 340 (476)
-++.+++.+-..-... |..| .......+..++...+.++++++.|+...+ . ...++..|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444443332222 1111 011222344445555555555555554432 1 1234555555566666
Q ss_pred ChHHHHHHHHHHH
Q 038936 341 MPDKALEYFELLL 353 (476)
Q Consensus 341 ~~~~A~~~~~~~~ 353 (476)
|+++|.-+..+..
T Consensus 177 D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 177 DYEKALFFPCKAA 189 (518)
T ss_pred hhhHHhhhhHhHH
Confidence 6666655554443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.15 E-value=0.24 Score=45.69 Aligned_cols=155 Identities=10% Similarity=0.136 Sum_probs=105.1
Q ss_pred hhhhcCCHHHHHHHHHh--c-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 4 ILCNQRRLKEALQILHQ--I-SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
...-+|+++++.+..+. + +.-+....+.+++-+.+.|-++.|+++-++ +. .-.....+.|+++.|
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHH
Confidence 34567888998777762 2 233466688889989999999999987433 22 234566789999999
Q ss_pred HHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCch
Q 038936 81 QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (476)
.++.++.. +...|..|.....+.|+++-|.+.|++... +..|+-.|.-.|+.+.-.++.+.... .+
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~-~~------ 403 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEE-RG------ 403 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHH-TT------
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHH-cc------
Confidence 98887754 567999999999999999999999998864 66777788889998887777766654 22
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHH
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGY 184 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~ 184 (476)
-++..+.++.-.|+.++..+++..
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 255666666667777776666543
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.10 E-value=0.66 Score=38.47 Aligned_cols=62 Identities=19% Similarity=-0.034 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHccc
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGF--KPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
.+..-+..-.+.|++++|.+.|+.+.+.-+ +-...+...++.++-+.++++.|+..++....
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333334445566777777777777765421 11223334444555566777777777666553
No 255
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.09 E-value=0.024 Score=48.23 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=63.4
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChH
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLD 446 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 446 (476)
.-|.++|.+++|+.+|.+.... .+.++..+..-+.+|.+..++..|..-...+- .+.-...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3466777777777777776642 22266666666677777777776665554431 1122335555555556678888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHH
Q 038936 447 LAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+|.+-++.+++++|++...--.++
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHH
Confidence 888888888888888654444433
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.07 E-value=1.3 Score=41.62 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCCch-----HHHHHHHHHHh----hhhhhhHHHHHHHHHHcCCCchHHHHH
Q 038936 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKF-----TLSSVLSAVSA----IQCLRLGKEIHGYIMRTGFDSDEVVWS 198 (476)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (476)
.++....=.|+-+..++.+....+..++.-... .|..++..++. ..+.+.+.++++.+.++ -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 344444556777777777776654222222221 22222322222 23456667777766654 24433332
Q ss_pred -HHHHHHHcCCCHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 199 -ALSDMYGKCGSINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 199 -~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
.-.+.+...|++++|++.|+..... ....+-.+.-.+.-.++|++|...|..+.+.. ..+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 2345566677777777777765331 11223344555666677777777777776654 34444444444332
Q ss_pred -hccccH-------HHHHHHHHHHH
Q 038936 271 -ADHAAE-------ELGKQVHGYMT 287 (476)
Q Consensus 271 -~~~~~~-------~~a~~~~~~~~ 287 (476)
...++. ++|..++.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 234444 55555555543
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=96.06 E-value=0.17 Score=45.76 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+|.+..++..+.+ +.|......+..+....++++.|...|+++..- .|.....|...+....-+|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555555544 335555555555555555566666666666542 122344455555555566666666666666
Q ss_pred -CCCCCcHH---HHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 423 -MPMKPDKF---LWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 423 -~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
+...|... .....+..|+. ...+.|+.+|-+-.
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 34444332 22222223333 33555665555433
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.02 E-value=0.014 Score=31.95 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 431 LWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+|..++..|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788899999999999999999966543
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.97 E-value=0.091 Score=38.02 Aligned_cols=83 Identities=19% Similarity=0.059 Sum_probs=44.5
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV---FISNCLLDMYAKCGNIS 78 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 78 (476)
+...|+++.|++.|.+.. +..+++||.-.+++.-+|+.++|++=+++..+..-..+. ..|..-...|-..|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 455666666666666653 556666666666666666666666666666554211111 12222233444455555
Q ss_pred HHHHHHHHc
Q 038936 79 DAQTLFDEM 87 (476)
Q Consensus 79 ~A~~~~~~~ 87 (476)
.|..=|+..
T Consensus 133 ~AR~DFe~A 141 (175)
T KOG4555|consen 133 AARADFEAA 141 (175)
T ss_pred HHHHhHHHH
Confidence 555555543
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.89 Score=38.53 Aligned_cols=139 Identities=9% Similarity=0.061 Sum_probs=82.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccccc-c---hHHHHHHHHHHhcCCH
Q 038936 33 IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD-V---CSYNTMISGFTKGGSL 108 (476)
Q Consensus 33 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~ 108 (476)
.......|++.+|...|......... +...-..+..+|...|+.+.|..++..+.... . .....-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556778888888888888776432 45566677788888888888888888876421 1 1112233444444444
Q ss_pred HHHHHHHhcCCC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhh
Q 038936 109 EQARNLFDEMPQ-R-DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172 (476)
Q Consensus 109 ~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 172 (476)
.+...+-.+.-. | |...-..+...+...|+.+.|++.+-.+.......-|...-..++..+...
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 444443333322 3 455566677777788888888877766665344444444444444444333
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.89 E-value=0.52 Score=35.79 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCH
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL 108 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (476)
...++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+..+.+.. ..+.......+..|.+.+-+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 44566777777788888888888877763 57778888888887654 3444444442 34455566677777777888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 038936 109 EQARNLFDEMPQRDNFSWTAMISGYVRY-NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170 (476)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 170 (476)
+++.-++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 888887777643 33344444444 7777777776642 23446666665544
No 262
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.83 E-value=0.15 Score=37.68 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
..++..++.++++.|+.+....+++..-. +.++... ..+. .....+..|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 44566666777777776666666654432 2222110 0000 2223367889999999999
Q ss_pred HHHhcCChhhHHHHHhhC----CCCCcHHHHHHHHHHHHhcC--ChHHHHHHHHH
Q 038936 406 LLARSGRFHEAEDVISKM----PMKPDKFLWASLLGGCRIHG--NLDLAKRAAEA 454 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 454 (476)
+|+..|++..|+++++.. +++-+...|..++.-....- +.+.+.+.+.+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~~~~~~~ 115 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKREDRAARYFLK 115 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccccHHHHhh
Confidence 999999999999998875 45556778888886554432 34444444433
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.76 E-value=0.4 Score=41.60 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=129.2
Q ss_pred HHhhhhhhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhh----ccc-c----hhhHHHHHHHHHh
Q 038936 169 VSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKM----VDR-D----VVSWTAMIGRYFQ 237 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-~----~~~~~~l~~~~~~ 237 (476)
+....+.+++...|..-+.+- ...-..++..+..+.++.|.+++++..--.. .+. | ...|-.+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888887766542 1122346677788888889888876553222 111 1 2345556666666
Q ss_pred cCChhHHHHHHHHHHHc-CCCCC---HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-----CchhhHHHHHHHhhhc
Q 038936 238 EGRREEGFALFSELIKS-GIRPN---AFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-----PYSFAASALVHMYSKC 308 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 308 (476)
..++.+++.+-..-... |..|. -....++..++...+.++++.+.|+...+.... ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666665544332 22221 123344566777888999999999988765222 2245778889999999
Q ss_pred CChhhHHHHHccCCC-------CChh-hH-----HHHHHHHHhcCChHHHHHHHHHHHH----cCCCCcH-HHHHHHHHH
Q 038936 309 GNVENSKKVFNGMPR-------PDLV-SW-----TSLIAGYAQNGMPDKALEYFELLLK----SGTQPDH-IVFVGVLTA 370 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~-------~~~~-~~-----~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~ 370 (476)
.++++|.-+..+..+ .|.. -| -.+..++...|....|.+.-++..+ .|-.+.. .....+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999988766544321 2221 12 2233446666666666666666543 3322211 234455556
Q ss_pred HhccCchhhHHHHHHHHH
Q 038936 371 CTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~ 388 (476)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 666777777666665554
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.75 E-value=1 Score=37.71 Aligned_cols=197 Identities=17% Similarity=0.123 Sum_probs=135.2
Q ss_pred cHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHHHHccCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 275 AEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKKVFNGMP-----RPDLVSWTSLIAGYAQNGMPDKALEY 348 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (476)
....+...+......... ............+...+++..+...+.... ......+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 124555666677777788887777776654 23445677777788888889999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHH-HHhccCchhhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 349 FELLLKSGTQPDHIVFVGVLT-ACTHAGLVDKGLQYFHSIKEKHGL--TYTADHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
+.........+ ......... .+...|+++.|...+.+.... .. ......+......+...++.++|...+.+. .
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 99998854333 122222333 688999999999999998642 21 123444455555577889999999999986 3
Q ss_pred CCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 425 MKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 425 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
..++ ...+..+...+...++++.|...+..+....|.....+..++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL 246 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence 3444 567888888889999999999999999999998555666655554
No 265
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.76 Score=37.38 Aligned_cols=20 Identities=10% Similarity=-0.149 Sum_probs=10.6
Q ss_pred hcCChHHHHHHHHHHHHcCC
Q 038936 441 IHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~p 460 (476)
..+++.+|+.+|++.....-
T Consensus 166 ~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33555566666655554333
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.59 E-value=0.76 Score=35.68 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhc--CCHHHHHHHHhcCCCCCc
Q 038936 46 KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG--GSLEQARNLFDEMPQRDN 123 (476)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~ 123 (476)
.+++..+.+.+++|+...+..++..+.+.|++....+++..-.=+|.......+-.+... .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 345555566777777777777888888777777777666653333333322222111111 11233444444443
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 038936 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186 (476)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (476)
..+..++..+...|++-+|+++.++...... .....++.+..+.+|...-..+++...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~~-----~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVDS-----VPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCccc-----CCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2355666777778888888887766432111 122334444444444444444444333
No 267
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.55 E-value=1.9 Score=39.57 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=27.3
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHc
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (476)
|......++..+.......-+..+..+|...| .+...+..++++|... ..++-..+|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 44444555555555555555555555555543 2333344444555444 2333334444
No 268
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.19 Score=39.57 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=51.6
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTA-----DHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHG 443 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 443 (476)
+...|++++|..-|..+++. .++.. ..|..-+.++.+.+.++.|++-..++ .+.|. ......-..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44566666666666666653 22221 12233344556666666666655553 44442 223333344566666
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHH
Q 038936 444 NLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 444 ~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.+++|+.-|+++++.+|.+..+..
T Consensus 183 k~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHH
Confidence 777777777777777776554443
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.53 E-value=0.64 Score=33.99 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=70.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
.-.|..++..++..+...+. +..-++.++--....-+-+...+.++.+-+. .|. ..+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 34566677777777666532 3333444443333333333333333333221 121 1223333333
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
..+-.+. .+.......+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-++ |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3322221 222334456677888888888888888887643 677778888888899999999998888888765 54
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.30 E-value=0.089 Score=31.63 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
-.+.-++.+.|++++|.+..+.+++.+|+|..+....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3455678999999999999999999999998765543
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.76 Score=35.42 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=57.9
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChhHHHHHHHHHHhccCCCCCch-HHHHHHH--HHHhhhh
Q 038936 103 TKGGSLEQARNLFDEMPQRDNFSWTAMI-----SGYVRYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLS--AVSAIQC 174 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~--~~~~~~~ 174 (476)
.+.+..++|+.-|..+.+.+-..|-.|. ......|+...|...|.++-. ....|-.. ....+=. .+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcchhhHHHHHHHHHHHhcccc
Confidence 4456666666666666555444444333 334566777777777777765 22223221 1111111 1233444
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (476)
++.+....+.+-..+-+.-...-..|.-+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444444444443333333333444455555555666666666655533
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.19 E-value=2.3 Score=38.37 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=69.0
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHH
Q 038936 296 FAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF-VGVLT 369 (476)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 369 (476)
.++...+..-.+...++.|..+|-++.+ +++..+++++..++ .|++..|..+|+--... .||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3444455555556666677777766654 45556666666554 35566677777655443 2333332 33344
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
-+...++-..|..+|+...++..-..-..+|..++.-=..-|++..+..+=+++
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 455666777777777755543111111455666666666666666665544443
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.11 E-value=1.5 Score=40.22 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=39.6
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC--CC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR--PD---LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
..+-..+..+.-+.|+.++|++.++++.+ |. ......|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344566666677777777777777764 22 23455677778888888888877777644
No 274
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.02 E-value=0.056 Score=28.63 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+-.++.++...|++++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456777888899999999999999999964
No 275
>PRK11906 transcriptional regulator; Provisional
Probab=95.00 E-value=2 Score=39.20 Aligned_cols=107 Identities=9% Similarity=-0.027 Sum_probs=58.1
Q ss_pred hHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 313 NSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 313 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+|.++-+...+ .|+.....+..+..-.++++.|...|++.... .||. .+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44444444443 45555555666566666677777777777764 3443 344444555566777777777777766
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
+..+......+....++.|+..+ +++|++++-+
T Consensus 400 rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 43222222333333344454433 5666665543
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.99 E-value=3.2 Score=38.96 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
.+|...+.--...|+++.+.-+|++..-.--.-+...+ -.+.-....|+.+.+..++....+.-++..+.+--.-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWi-ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWI-KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHH-HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 45666667777777887777777776532211222222 22222233377777777766666555444433322222333
Q ss_pred hhcCChhhHHHHHccCCC--CChh-hHHHHHHHHHhcCChHHHH---HHHHHHHHcCCCCcHHHHHHHH----H-HHhcc
Q 038936 306 SKCGNVENSKKVFNGMPR--PDLV-SWTSLIAGYAQNGMPDKAL---EYFELLLKSGTQPDHIVFVGVL----T-ACTHA 374 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~ 374 (476)
-..|++..|..+++.+.+ |+.. .-..-+....+.|+.+.+. +++....... -+..+...+. + .+.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHh
Confidence 445677888777777764 3322 1112233345566666665 2222222211 1111111111 1 12335
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 411 (476)
++.+.|..++.++.+ -.+++...|..++....-.+
T Consensus 455 ~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 677778888877775 45666666776666655444
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.92 E-value=2.3 Score=36.88 Aligned_cols=20 Identities=20% Similarity=-0.089 Sum_probs=14.1
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 038936 437 GGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~ 456 (476)
..+.+.++++.|.+.|+-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33556788888888887654
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=4.3 Score=39.46 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=62.1
Q ss_pred HHHHHhcCChHHHHHHHHHcccc-----cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHH
Q 038936 68 LDMYAKCGNISDAQTLFDEMQER-----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142 (476)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (476)
+..+.+.+.+++|+.+.+..... -...+...+..+.-.|++++|-...-.|...+..-|.-.+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566777788888777766542 2245667777777888888888877777777766676666666666655443
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
..+ +.. .....+...|..++..+..
T Consensus 443 a~~---lPt-~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPT-GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCC-CCcccCchHHHHHHHHHHH
Confidence 332 222 2223345556666665554
No 279
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=1.9 Score=35.22 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC---CCCCcHHHHH------HHHHHHHh
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM---PMKPDKFLWA------SLLGGCRI 441 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~------~l~~~~~~ 441 (476)
.++++|+..|+...+-+..... ...+...+..-...|++.+|+++|+++ ....+..-|. ..+.++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5666666666665542211111 112223334445677788888888775 2222222221 11112222
Q ss_pred cCChHHHHHHHHHHHHcCCCCchh
Q 038936 442 HGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+|.-.+...+++..+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 367777788888888888864443
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.76 E-value=0.095 Score=30.19 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038936 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66 (476)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 66 (476)
.++..+...+.+.|++++|.++|++.++.. +-|...+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 456667777777777777777777777754 224444433
No 281
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.75 E-value=0.097 Score=48.18 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=79.0
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 448 (476)
+.-.|+...|..++..+....... .......|+..+.+.|...+|..++.+. -....+.++..+++++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 345789999999998887432222 2223556788889999999999988774 2234566888899999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHh
Q 038936 449 KRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
++.++.+++++|+++.+-+.|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999888877654
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.73 E-value=1.2 Score=35.38 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHH---
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--- 402 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 402 (476)
.+..+...|++.|+.++|++.|.++.+....|... .+..+++.....+++..+...+.++........+...-+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45567777888888888888888877765444443 3556677777778888777777776643222112111111
Q ss_pred -HHHHHHhcCChhhHHHHHhhC
Q 038936 403 -IVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 403 -l~~~~~~~g~~~~A~~~~~~~ 423 (476)
-+-.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 122344677888888877765
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.66 E-value=1.6 Score=33.81 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=82.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH-----HHHHHh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI-----VDLLAR 409 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~ 409 (476)
+.+.+..++|+.-|..+.+.|...-+. ............|+...|...|.++-.. .|.+.....+ ...+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 456778899999999998877543222 1222334457789999999999988865 3333333222 345678
Q ss_pred cCChhhHHHHHhhCCC--CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 410 SGRFHEAEDVISKMPM--KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 410 ~g~~~~A~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.|.+++....++.+.. .| ....-..|..+-.+.|++.+|.+.|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8889888888888732 23 334556777778888999999999998877
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.58 E-value=1.6 Score=33.51 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=30.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhccCchhhHHHHHHHHHHh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGV-LTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
-.+.++.+++..++..+.- +.|.......+ ...+...|++.+|..+|+++.+.
T Consensus 20 al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456667777777776666 34544333222 23345667777777777776543
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.52 E-value=0.1 Score=29.44 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.+++.++..|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888876
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.49 E-value=1.4 Score=32.36 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
.+..+.....+|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4445667777888888888888876543 677777778888888888888888888888887743
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=5.2 Score=38.96 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=85.1
Q ss_pred hhhhhhcCCHHHHHHHHHhcC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 2 IDILCNQRRLKEALQILHQIS--HP---SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
|+-+.+.+.+++|++..+... .+ -...+...|..+...|++++|-...-.|... +...|......++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 566788899999999998875 23 3456778888888889999988887777653 44555555555555554
Q ss_pred hHHHHHHHHHccc-ccchHHHHHHHHHHhcCCHHHHHHHHhcCC--------------C------CCcchHHHHHHHHHh
Q 038936 77 ISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQARNLFDEMP--------------Q------RDNFSWTAMISGYVR 135 (476)
Q Consensus 77 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~------~~~~~~~~l~~~~~~ 135 (476)
......++=.-.. -++..|..++..+.. .+...=.++..... . .+...-..|+..|..
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY 517 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH
Confidence 3332221111000 134556666666554 22222222222111 0 122234447777888
Q ss_pred cCChhHHHHHHHHHHh
Q 038936 136 YNQPIEALDLYRMMQN 151 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~ 151 (476)
.+++..|+.++-.+.+
T Consensus 518 d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQD 533 (846)
T ss_pred ccChHHHHHHHHhccC
Confidence 8888888888776654
No 288
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.17 E-value=0.58 Score=39.15 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHHhhc--ccchhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc--------------
Q 038936 215 QIFDKMV--DRDVVSWTAMIGRYFQ-----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH-------------- 273 (476)
Q Consensus 215 ~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 273 (476)
+.|.... ++|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444443 4455556655555543 345566666777888888888888888888776542
Q ss_pred --ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh-hHHHHHccC
Q 038936 274 --AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE-NSKKVFNGM 321 (476)
Q Consensus 274 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 321 (476)
.+-+-++.++++|...|+.||..+-..++.++.+.+-.- +..++.--|
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234568889999999999999999999999998877543 334443333
No 289
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=3.5 Score=35.13 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
....|+...|..+++...... +-+......+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 345566666666666665553 2334444456666666666666666666655
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.90 E-value=0.15 Score=27.71 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 291
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.73 E-value=0.11 Score=39.77 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHH
Q 038936 32 LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111 (476)
Q Consensus 32 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 111 (476)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ......++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHHH
Confidence 344455556666666666666655544556666666666666666566665555321 12233344444444444444
Q ss_pred HHHHhcC
Q 038936 112 RNLFDEM 118 (476)
Q Consensus 112 ~~~~~~~ 118 (476)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 4444443
No 292
>PRK09687 putative lyase; Provisional
Probab=93.67 E-value=4.3 Score=35.13 Aligned_cols=222 Identities=10% Similarity=0.026 Sum_probs=127.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHHc--ccc
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI----SDAQTLFDEM--QER 90 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~ 90 (476)
+++.+..+|..+....+..+...|..+ +...+..+... ++...-...+.++...|+. .++...+..+ .++
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~ 103 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK 103 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Confidence 344445888888888999888888644 44444445443 3556666667777777764 4678888766 356
Q ss_pred cchHHHHHHHHHHhcCCH-----HHHHHHHh-cCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH
Q 038936 91 DVCSYNTMISGFTKGGSL-----EQARNLFD-EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~~-----~~a~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (476)
+..+....+.++...+.. ..+...+. .+..++..+-...+.++.+.++ +.++..+-.+.. .++...-..
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~ 178 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNW 178 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHH
Confidence 777777777777665432 23344443 3445677777788888888886 566777666664 233334444
Q ss_pred HHHHHHhhh-hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhH
Q 038936 165 VLSAVSAIQ-CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243 (476)
Q Consensus 165 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 243 (476)
.+.++...+ ....+...+..++. .++..+....+.++.+.|+. .++..+-...+.+. .....+.++...|.. +
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-h
Confidence 444444332 12334444444432 34555666666677776664 34444333333222 223445555555553 4
Q ss_pred HHHHHHHHHH
Q 038936 244 GFALFSELIK 253 (476)
Q Consensus 244 a~~~~~~~~~ 253 (476)
|...+.++.+
T Consensus 253 a~p~L~~l~~ 262 (280)
T PRK09687 253 LLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHh
Confidence 5666665554
No 293
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.61 E-value=0.14 Score=26.54 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.|..++..+...|++++|...++++++..|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 46667777888899999999999998888753
No 294
>PRK12798 chemotaxis protein; Reviewed
Probab=93.52 E-value=5.5 Score=35.90 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=103.8
Q ss_pred cCChhhHHHHHccCCC----CChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHhccCchh
Q 038936 308 CGNVENSKKVFNGMPR----PDLVSWTSLIAG-YAQNGMPDKALEYFELLLKSGTQPDHI----VFVGVLTACTHAGLVD 378 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~ 378 (476)
.|+.+++.+.+..+.. +....+-.|+.+ .....++.+|+++|+...-. .|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5777777777777763 334456666655 55667888999999887652 34332 2333344456788888
Q ss_pred hHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCC---hhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADH-YACIVDLLARSGR---FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (476)
++..+-.+...++...|-..- +..+...+.+.++ .+.-..++..|.-.-....|..+...-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888777777766554443332 3334444444443 344445555554333456888888888888999999999999
Q ss_pred HHHcCCCCchhHHHHHHhhh
Q 038936 455 LFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 455 ~~~~~p~~~~~~~~l~~~y~ 474 (476)
++.+.+ +...-...+.+|.
T Consensus 283 A~~L~~-~~~~~~~ra~LY~ 301 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYR 301 (421)
T ss_pred HHHhcc-CCCcchHHHHHHH
Confidence 998774 3445555555554
No 295
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.47 E-value=0.97 Score=33.22 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHHHhcCChh---hHHHHHhhC-C-CCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 394 TYTADHYACIVDLLARSGRFH---EAEDVISKM-P-MKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
.++..+-..+++++.+..+.+ +-+.+++++ + ..|+ ......+.-++.+.++++.++++.+..++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 667777778888888877644 456677765 2 3343 23444566678899999999999999999999987765
Q ss_pred H
Q 038936 467 V 467 (476)
Q Consensus 467 ~ 467 (476)
.
T Consensus 109 ~ 109 (149)
T KOG3364|consen 109 E 109 (149)
T ss_pred H
Confidence 3
No 296
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=4.9 Score=34.91 Aligned_cols=148 Identities=11% Similarity=0.003 Sum_probs=81.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchH--H--HHHHHHHHhcCCH
Q 038936 36 CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCS--Y--NTMISGFTKGGSL 108 (476)
Q Consensus 36 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~--~--~~l~~~~~~~g~~ 108 (476)
+-.+|++.+|-..++++.+. .+.|.-.++..=.++.-.|+.+.-...++++.. ++... | ..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34456666666666666664 444556666566666666776666666666653 23222 2 2333444566777
Q ss_pred HHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccC--CCCCchHHHHHHHHHHhhhhhhhHHHHHH
Q 038936 109 EQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN--SVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183 (476)
Q Consensus 109 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 183 (476)
++|++.-++..+- |...-.++...+-..|+.+++.++..+-...-. --.-...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777766666543 334445555666666777777766654432111 01111223333334444466777777766
Q ss_pred H
Q 038936 184 Y 184 (476)
Q Consensus 184 ~ 184 (476)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.39 E-value=0.094 Score=28.15 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=15.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHH
Q 038936 394 TYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
|-+...|..++.+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566666666666666666664
No 298
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.35 E-value=1.3 Score=37.13 Aligned_cols=97 Identities=13% Similarity=0.206 Sum_probs=73.2
Q ss_pred HHHHccCC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC------------
Q 038936 315 KKVFNGMP--RPDLVSWTSLIAGYAQ-----NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG------------ 375 (476)
Q Consensus 315 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------ 375 (476)
++.|..+. +.|-.+|...+..+.. .+..+-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 4566777777777654 3455666677888999999999999999998875532
Q ss_pred ----chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 376 ----LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 376 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
+-+-++.++++|... |+.||.++-..++.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 334588899999854 999999999999999988775
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.32 E-value=11 Score=38.81 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=73.1
Q ss_pred HHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh
Q 038936 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (476)
-.+..-.+.|-+.+|+.++.--.+.-...|.+....+...+.+++|.-.|+..-+. .-.+.+|...|++.+
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHH
Confidence 34444455666666666554333333345555666667778888888777654321 124567888899999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCC
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 427 (476)
|..+..++.. +-.--..+-..|+.-+...++.-+|-+++.+....|
T Consensus 984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 8888765542 111112223667788889999999999888875444
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.25 E-value=2.1 Score=32.81 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=38.4
Q ss_pred HHHHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHccc
Q 038936 26 PSIYSSLIQFC---RQNRALEEGKKVHSHLKSSGFKPGVFIS-NCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 26 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
..+.+.|+... .+.++.+++..++..+.-. .|..... ..-...+...|++.+|+.+|+++.+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34445555433 5667888888888877663 3433322 2223445677888888888888765
No 301
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.24 E-value=9.2 Score=37.67 Aligned_cols=144 Identities=11% Similarity=-0.049 Sum_probs=70.1
Q ss_pred hhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 311 VENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 311 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
..++...++.... .+......-+......++++.+...+..|.... .-...-...+.+++...|+.++|...|+++.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444332 133333333444445666666666665553321 1223333445555555666666666666543
Q ss_pred Hhc-----------CCCCC------hh--------hHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcC
Q 038936 389 EKH-----------GLTYT------AD--------HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443 (476)
Q Consensus 389 ~~~-----------~~~~~------~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 443 (476)
... |.++. +. .-..-+..+...|...+|...+..+....+......+.......|
T Consensus 374 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 374 QQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 211 11100 00 011223455666777777777766532344444555555555667
Q ss_pred ChHHHHHHHHHH
Q 038936 444 NLDLAKRAAEAL 455 (476)
Q Consensus 444 ~~~~A~~~~~~~ 455 (476)
.++.++....+.
T Consensus 454 ~~~~ai~~~~~~ 465 (644)
T PRK11619 454 WWDLSVQATIAG 465 (644)
T ss_pred CHHHHHHHHhhc
Confidence 777777665543
No 302
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.08 E-value=9.8 Score=37.51 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=52.4
Q ss_pred cCChHHHHHHHHHHHHcC-CCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 038936 339 NGMPDKALEYFELLLKSG-TQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 415 (476)
..+.+.|...+....... ..+.. .....++......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 344566666666653332 21111 12223322222322244555555443321 1233334444444446666666
Q ss_pred HHHHHhhCCC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 416 AEDVISKMPM--KPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455 (476)
Q Consensus 416 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (476)
+...+..|+. .....-..-+++++...|+.++|...|+++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666631 112222233444545567777777776665
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.06 E-value=1.3 Score=37.72 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChhhHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTADHYACI 403 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 403 (476)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|...|+...|+..|+++.. ..|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666677777777777777777654 34556677777777777777777777776554 33666666555554
Q ss_pred HHH
Q 038936 404 VDL 406 (476)
Q Consensus 404 ~~~ 406 (476)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 304
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.01 E-value=5.6 Score=34.51 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=55.9
Q ss_pred hhcCCHHHHHHHHHhcC----CCCHHHHHHH-------HHHHHhcC-ChhHHHHHHHHHHHc--------CCCCCh----
Q 038936 6 CNQRRLKEALQILHQIS----HPSPSIYSSL-------IQFCRQNR-ALEEGKKVHSHLKSS--------GFKPGV---- 61 (476)
Q Consensus 6 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 61 (476)
.++|+++.|..++.++. ..++.....+ .......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888774 2233222222 22233445 777777666665432 111221
Q ss_pred -hhHHHHHHHHHhcCChH---HHHHHHHHccc--cc-chHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038936 62 -FISNCLLDMYAKCGNIS---DAQTLFDEMQE--RD-VCSYNTMISGFTKGGSLEQARNLFDEMPQ 120 (476)
Q Consensus 62 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 120 (476)
.++..++.+|...+..+ +|..+++.+.. |+ +..+..-+..+.+.++.+++.+.+.+|..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 23334444454444433 33333333322 22 33444445555555555555555555543
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=1.1 Score=38.12 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=65.0
Q ss_pred CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 038936 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDL-----VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363 (476)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 363 (476)
|.+....+...++..-....+++.++..+-++.. |+. .+-...++ ++-.-++++++.++..=+.-|+.||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 4455555555666666666777777777666653 211 01111222 2223366788888877778888888888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+..+++.+.+.+++..|..+...+..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877776654
No 306
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.73 E-value=0.42 Score=37.19 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=25.3
Q ss_pred CCCc-HHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 425 MKPD-KFLWASLLGGCRIH-----------GNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 425 ~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
+.|+ ..++..++.++... .-+++|...|+++.+.+|+|......|
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4454 34555555555432 226777778888888999886554444
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.66 E-value=0.28 Score=26.10 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555554
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.65 E-value=21 Score=40.10 Aligned_cols=367 Identities=14% Similarity=0.083 Sum_probs=175.5
Q ss_pred HHHHHHhcCChHHHHHHHHHc----cccc--chHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCCh
Q 038936 67 LLDMYAKCGNISDAQTLFDEM----QERD--VCSYNTMISGFTKGGSLEQARNLFDE-MPQRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 67 l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 139 (476)
+..+-.+++.+.+|...++.- .+.+ ...+..+...|..-++++....+... ...+ . ....|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHHHHHhhccH
Confidence 444555778888888888873 2211 22344444478888888877776663 2222 2 22334445667888
Q ss_pred hHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHH-HHHHHHHHHcCCCHHHHHHHHH
Q 038936 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV-WSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
..|...|+.+.+. .++...+++.++......+.++...-..+-..... ++.... ++.-+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888888752 22335566666666666666666555444333221 222222 2333344466677776666554
Q ss_pred hhcccchhhHHHH--HHHHHhcCChhH--HHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 219 KMVDRDVVSWTAM--IGRYFQEGRREE--GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 219 ~~~~~~~~~~~~l--~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
+.+...|... +....+..+-+. -.+..+.+.+.-+.| +.+++..|.+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy------------------ 1593 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSY------------------ 1593 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchH------------------
Confidence 4444444433 222222211111 111222221111000 0011111111
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHH-HHHcCCCC-----cHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNGMPDKALEYFEL-LLKSGTQP-----DHIV 363 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~-----~~~~ 363 (476)
...|..++..+.-+. .+...+.+..... .+..-|..-+..=....+..+-+--+++ +......| -..+
T Consensus 1594 ~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 122222332222211 1111111122211 1111222222111111111111111111 11111111 2346
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCc--------HHHHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPD--------KFLWA 433 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------~~~~~ 433 (476)
|...++...+.|.++.|...+-.+.+. + . +..+--.++.+...|+...|+.++++. ...|+ +..-+
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~-r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKES-R-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhc-c-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 777777778889998888877777654 2 3 344666778888899999998888764 11111 11111
Q ss_pred HHHHH--------HH-hcCC--hHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 434 SLLGG--------CR-IHGN--LDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 434 ~l~~~--------~~-~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
..+.. |. ..|+ -+.-++.|..+.+..|+....|..||.-|
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 11111 11 2243 44567888888899998778888888544
No 309
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.38 E-value=5.8 Score=33.14 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=25.0
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 235 YFQEGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
-.+.|++++|.+.|+.+...- -+-...+...++.++.+.++++.|....++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344455555555555554331 0112223333344444555555555555555444
No 310
>PRK09687 putative lyase; Provisional
Probab=92.34 E-value=6.9 Score=33.90 Aligned_cols=125 Identities=12% Similarity=-0.054 Sum_probs=63.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-chhhHHHHHHHHHHhcCCCCChhhHHH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKEKHGLTYTADHYAC 402 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 402 (476)
++..+-...+.++.+.++ .+++..+-.+.+. ++...-...+.++...+ +...+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444445555555554 4455555555542 33334344444444432 13345555555442 345555555
Q ss_pred HHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.+.++.+.|+ ..|+..+-+.-..++ .....+.++...|+. +|...+.++++.+|
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 6666666666 344444444321233 233455566666663 57777777777666
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.23 E-value=2.5 Score=36.77 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CC----CHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCC--
Q 038936 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGK--CG----SINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGR-- 240 (476)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~-- 240 (476)
+....+++.+.+.|+..+..+|.+..-.... .. ...+|..+|+.|.+. +-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344555566666666555544432222222 11 245666777777542 22233333222 2222
Q ss_pred --hhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhcccc--HHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 241 --REEGFALFSELIKSGIRPNA--FTFAGVLNACADHAA--EELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 241 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
.+.+..+|+.+.+.|+..+. .....++..+....+ ...+..+++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34566777777777765543 233333333322222 44777888888888888777766655433
No 312
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.20 E-value=8 Score=37.59 Aligned_cols=193 Identities=19% Similarity=0.279 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----------hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA----------FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 296 (476)
+-..++-.|....+++..+++.+.+... ||. +.|...++---+.|+-+.|....-.+.+..-+..+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455566677777788888887777653 322 123334444445677777777766666553232222
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH---HHHHHHHHhc
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV---FVGVLTACTH 373 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 373 (476)
+||-+|++ |+.|- +-..|...+..+.|++.|++.-+ +.|+..+ +..|+.+
T Consensus 280 -------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 280 -------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred -------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 23333332 11110 11224444556778888888777 4565543 3333322
Q ss_pred cC-chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 374 AG-LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 374 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
.| .++...++ +.+ -..|...+.+.|.+++-.+.++-. + .+.+-...+++.+|++..
T Consensus 333 aG~~Fens~El-q~I------------gmkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLEL-QQI------------GMKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHHH-HHH------------HHHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHHHH
Confidence 22 22322222 111 122445567788777776666532 1 233344568899999999
Q ss_pred HHHHHcCCCCchhHHHHHHh
Q 038936 453 EALFEIEPENPATYVTMANI 472 (476)
Q Consensus 453 ~~~~~~~p~~~~~~~~l~~~ 472 (476)
+.|.++.|+....-..+.++
T Consensus 390 e~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 390 EMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHHhccCCceehHHHHHHHH
Confidence 99999998776555554443
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=2.5 Score=39.63 Aligned_cols=132 Identities=15% Similarity=0.075 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHH
Q 038936 63 ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142 (476)
Q Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (476)
..+.+...+.+.|..++|+++-.. |+. -.....+.|+++.|.++..+. .+..-|..|.++....|++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhH
Confidence 445566667777777777654322 211 133445678888888776554 3556688888888888888888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
.+.|..... |..|+-.+...|+.+....+-....+.|. .|.-.-+|...|+++++.+++..-
T Consensus 686 ~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 686 SECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 888887765 45555555556665555555555444441 122233455567777666665443
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.04 E-value=13 Score=36.56 Aligned_cols=50 Identities=10% Similarity=-0.089 Sum_probs=34.5
Q ss_pred hccCchhhHHHHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTYT-------ADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
+-.+++..|...++.+.....-.|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4467888898888888764332222 3334445555667899999999997
No 315
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.86 E-value=14 Score=36.37 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=15.2
Q ss_pred HHhcCChhhHHHHHhhCCCCC
Q 038936 407 LARSGRFHEAEDVISKMPMKP 427 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~p 427 (476)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 568899999999999986544
No 316
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=8.2 Score=33.60 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=19.3
Q ss_pred hhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 306 SKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFE 350 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 350 (476)
..+|-+++|++.-++..+ .|.-.-.+....+...|++.++.++..
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 344445555444444433 122233334444444455555544443
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.47 E-value=0.27 Score=37.56 Aligned_cols=125 Identities=14% Similarity=0.189 Sum_probs=81.1
Q ss_pred ChhhhhhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 1 AIDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+|+.+.+.+.++....+++.+. ..++...+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 5778888889999888888874 456888999999999998888888887721 11333456777778888
Q ss_pred hHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038936 77 ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (476)
+++|.-++..+...+.. +..+...++++.|.+.+.+. .++..|..+++.+...+..
T Consensus 86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 88887777664432111 11123344555555444433 3567788888887766543
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.34 E-value=0.49 Score=25.04 Aligned_cols=26 Identities=42% Similarity=0.639 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555544
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.20 E-value=2.7 Score=35.92 Aligned_cols=60 Identities=15% Similarity=0.392 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..++..++..+...|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566666677777777777777666543 334566677777777777777776666654
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.92 E-value=1.7 Score=34.56 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhhHHHHHhhCC---CCC---cHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDLLARSGRFHEAEDVISKMP---MKP---DKFLWA 433 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p---~~~~~~ 433 (476)
..+..++..|.+.|+.+.|.+.|.++.+. ...+. ..++..+++...-.|++..+...+.++. ..+ +...-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 36778889999999999999999998875 33333 4456778889999999999998888762 121 211111
Q ss_pred HHHH--HHHhcCChHHHHHHHHHHHH
Q 038936 434 SLLG--GCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 434 ~l~~--~~~~~g~~~~A~~~~~~~~~ 457 (476)
.... .+...|++..|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1222 24566899998888766654
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.20 E-value=14 Score=33.38 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
....++..++..+.+.|+++.|...+..+.+. .+.....-++..-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777777777777777777776542 233344445666667777777777776665
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.04 E-value=3.5 Score=33.04 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhhH
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL--TYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
+.|...|-.+...+.--++.....|+. |....+.+++++++.++.+..+- .++++.+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666666665554333333333333 33355666666666666653221 34556666666666666666555
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.91 E-value=2.8 Score=29.12 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
+..+-+..+....+.|++......+++|.+.+++..|+++++.+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666667788899999999999999999999999998888875433 235666543
No 324
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.83 E-value=9.5 Score=31.00 Aligned_cols=160 Identities=9% Similarity=-0.011 Sum_probs=81.5
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChh-hHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHH
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV-SWTSL--IAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGV 367 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l 367 (476)
.-+.+||.+.-.+...|+++.|.+.|+...+-|+. -|..+ .-++--.|++.-|.+-+...-..+.. |+ ..|..+
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl 175 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYL 175 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 34567777777778888888888888887765443 22222 22234467777777777666654321 22 122222
Q ss_pred HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCChhhHHHHHhhC-CCC-----CcHHHHHHHHHHHH
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD-LLARSGRFHEAEDVISKM-PMK-----PDKFLWASLLGGCR 440 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~ 440 (476)
. ...-++.+|..-+.+-.+ ..+.+-|...+. .|...=..+.+.+-...- ... .-..+|-.++.-+.
T Consensus 176 ~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 176 N---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred H---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 1 233445555543332222 123333333222 222111112222222221 100 11235666777777
Q ss_pred hcCChHHHHHHHHHHHHcCC
Q 038936 441 IHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~p 460 (476)
..|+.++|..+|+-++..+-
T Consensus 249 ~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 249 SLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccccHHHHHHHHHHHHHHhH
Confidence 78888888888888776543
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.81 E-value=0.62 Score=36.26 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 445 LDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+++|+.-|++++.++|+...++..+|++|.+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 5678888999999999999999999999864
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.66 E-value=3.4 Score=28.41 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
-++.+-++.+....+.|++......+++|.+.+|+..|+.+++.++.+.+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 345556666666778888888888888888888888888888887765433 334555543
No 327
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.64 E-value=8.4 Score=30.08 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 102 (476)
++++..+..+++.+.+.|++.. +..+...++-+|.......+-.+ .+....+.++--.|..+=...+..++..+
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL~~~~~~iievL 99 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRLGTAYEEIIEVL 99 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7888999999999999998764 44556667777776655444332 23445555555555554444677788899
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 103 TKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
...|++-+|.++.+....-+......++.+....+|..--..+|+-..
T Consensus 100 L~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 100 LSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999988766655666777788777777665555554444
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.14 E-value=8.1 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
|..........|...+++.+.+.+..
T Consensus 96 Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 96 WHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 44444444555555666666665553
No 329
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.91 E-value=1.1 Score=35.50 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHhcCChhhHHHHHhhC-C-CC-----CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 404 VDLLARSGRFHEAEDVISKM-P-MK-----PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~-~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+.-+.+.|++++|..-+..+ . .+ -....|..-+.+..+.+.++.|+.-..++++++|.+..+...-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44567899999999988875 1 11 134467777778889999999999999999999988877777776664
No 330
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.73 E-value=13 Score=34.01 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=64.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHH--hccCchhhHHHHHHHHHHhcCCC--CChhhHHHHHHHH
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTAC--THAGLVDKGLQYFHSIKEKHGLT--YTADHYACIVDLL 407 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 407 (476)
..+...+++..|.++++.+... ++++.. .+..+..+| ...-++.+|.+.++..... ... .....+..+....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHH
Confidence 3456888999999999999886 555554 344444544 3566788999998887754 111 1111222222222
Q ss_pred HhcCChhhHHHHHhhCCCCCcH-HHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 038936 408 ARSGRFHEAEDVISKMPMKPDK-FLWASLLGGCR--IHGNLDLAKRAAEALFE 457 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 457 (476)
.....+.........-..++.. ....-+..+.. ..|+++.|...+-++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2211111111111111111211 22233333333 25899999888877776
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.65 E-value=0.85 Score=22.53 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=8.4
Q ss_pred HHHHHHhcCChhhHHHHH
Q 038936 403 IVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~ 420 (476)
++..+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444444444444444
No 332
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.55 E-value=12 Score=30.45 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=18.1
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
||-.+.+-+...|+.++|..+|+-++.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 566666667777777777777666554
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=7 Score=33.67 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=73.8
Q ss_pred cCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (476)
.|.+....+...++..-....+++.++..+-.+.+. ...+|.. .+-.-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhcccc
Confidence 355556666666666666678888888888777542 1222322 233446778888888888899999
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
|.+++..+|..+.+.+++..|.++.-.|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877664
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.22 E-value=30 Score=34.70 Aligned_cols=191 Identities=16% Similarity=0.055 Sum_probs=102.1
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCch----h---hHHHHH-HHhhhcCChhhHHHHHccCCC--------CChhhHHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYS----F---AASALV-HMYSKCGNVENSKKVFNGMPR--------PDLVSWTSLI 333 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~ 333 (476)
.....++.+|..++.++...-..|+. . .++.+- ......|++++|.++-+.... +....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888877655222221 1 122222 234567888888877665542 4556777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH---HHHHHH--HHHhccCchh--hHHHHHHHHHHhcCCCC-----ChhhHH
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHI---VFVGVL--TACTHAGLVD--KGLQYFHSIKEKHGLTY-----TADHYA 401 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~~~~~--~a~~~~~~~~~~~~~~~-----~~~~~~ 401 (476)
.+..-.|++++|..+.....+..-.-+.. .+..+. ..+..+|+.. +....+......+.... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998887766542122222 222222 2355667333 22333333332211111 122333
Q ss_pred HHHHHHHh-cCChhhHHHHHhhC-CCCCcH--H--HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 402 CIVDLLAR-SGRFHEAEDVISKM-PMKPDK--F--LWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 402 ~l~~~~~~-~g~~~~A~~~~~~~-~~~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.+..++.+ .+...++..-++-- ...|.. . .+..++......|+.++|...++++..+.-
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 34444444 11122222222221 112222 2 223567777888999999999999887543
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=8.4 Score=36.43 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=63.3
Q ss_pred HHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHH
Q 038936 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283 (476)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 283 (476)
..+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|..... +..|+-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34567777777665433 3445677777777777777777777766543 334555555666666555555
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (476)
....+.| ..+ .-..+|...|+++++.+++.+-.+
T Consensus 716 ~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 716 SLAKKQG-KNN-----LAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHhcCc
Confidence 5555555 222 233456667888888877766544
No 336
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=15 Score=30.57 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=13.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 038936 129 MISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
-..+|...+++++|...+.+..
T Consensus 37 AAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3445555666666666665554
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.68 E-value=29 Score=33.78 Aligned_cols=80 Identities=15% Similarity=0.055 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChhhHHHHHhhCCCCCcHHHHHHHHHHHHhc-C--ChHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS----GRFHEAEDVISKMPMKPDKFLWASLLGGCRIH-G--NLDLA 448 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g--~~~~A 448 (476)
+...+...+.+.... -+......+.+.|..- .+.+.|...+.....++ ....-.+...+-.. | ....|
T Consensus 454 ~~~~~~~~~~~a~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHH
Confidence 344455555544432 2333344455444332 23566666666654344 33333333222211 1 15667
Q ss_pred HHHHHHHHHcCC
Q 038936 449 KRAAEALFEIEP 460 (476)
Q Consensus 449 ~~~~~~~~~~~p 460 (476)
.+.++++.+.++
T Consensus 529 ~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 529 KRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHhcCc
Confidence 777777666554
No 338
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.32 E-value=1.5 Score=22.71 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 443 GNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 443 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 577889999999999999888888776643
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.27 E-value=1.6 Score=24.36 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34455555555555555555555543
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.21 E-value=4.1 Score=37.19 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=79.5
Q ss_pred HHHhcCChHHHHHH-HHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 335 GYAQNGMPDKALEY-FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 335 ~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
--...|+...|-+- +..+....-.|+...+. ...+...|+++.+.+.+...... +.....+...+++...+.|++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhH
Confidence 34456676665544 44444433345444333 33456789999998887766542 344556677888888899999
Q ss_pred hhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 414 HEAEDVISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 414 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
++|...-+.| +.+ -++.............|-++++...+++.+.++|+.
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9999888876 211 133333333333455688899999999999988763
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.20 E-value=3.9 Score=32.80 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHhcCChHHHHHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCCh
Q 038936 71 YAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMP-------QRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~ 139 (476)
..+.|+ +.|++.|-.+.. .++.....|...|. ..|.+++..++.+.. ..|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334454 556666666553 24455555555555 567777777766554 23677788888888888888
Q ss_pred hHHH
Q 038936 140 IEAL 143 (476)
Q Consensus 140 ~~a~ 143 (476)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.07 E-value=2.8 Score=36.39 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=55.3
Q ss_pred HHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
-..-|.++|.+++|+.+|..... | |++.+..-..+|.+.+.+..|+.-....+..+ ..-...|..-+.+-...|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 34567888888888888887664 4 77788888888888888887777766665532 11112333333333444555
Q ss_pred hhHHHHHHHHH
Q 038936 378 DKGLQYFHSIK 388 (476)
Q Consensus 378 ~~a~~~~~~~~ 388 (476)
.+|.+-++.++
T Consensus 182 ~EAKkD~E~vL 192 (536)
T KOG4648|consen 182 MEAKKDCETVL 192 (536)
T ss_pred HHHHHhHHHHH
Confidence 55555555555
No 343
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.69 E-value=27 Score=32.42 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=58.4
Q ss_pred HHhhhcCChhhHHHHHccCCC---------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCcH--
Q 038936 303 HMYSKCGNVENSKKVFNGMPR---------P---DLVSWTSLIAGYAQNGMPDKALEYFELLLK-------SGTQPDH-- 361 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~---------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~-- 361 (476)
+.+...|++.+|.+++....- | .-..||.+...+.+.|.+..+..+|.+.++ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345556677777666654321 1 112346666666666666666666666553 3444422
Q ss_pred ---------HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 362 ---------IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 362 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
.+|+ ..-.|...|++-.|.++|.+.... +..++..|-.++++|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 1233 333456677777777777777764 4555666777776663
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.29 E-value=2 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=13.4
Q ss_pred HHHHHhccCchhhHHHHHHHHHHh
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655544
No 345
>PRK10941 hypothetical protein; Provisional
Probab=86.27 E-value=5.9 Score=33.92 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 403 IVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
+-.+|.+.++++.|+++.+.+ ...| ++.-+.--+..|.+.|.+..|..-++..++..|+++.+-
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 445566666666666666664 3334 344455555556667777777777777777777666544
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.02 E-value=4.8 Score=27.73 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
++.+-++.+....+.|++....+.+++|-+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555555666666666666666666666666666544
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.91 E-value=2.3 Score=22.37 Aligned_cols=27 Identities=41% Similarity=0.507 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355556666666666666666666655
No 348
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.58 E-value=22 Score=30.44 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=44.4
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHh
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF-VGVLTACT 372 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 372 (476)
++.....+...|.+.|++.+|+..|-....++...+..++......|...+ ...| ...+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e----------------~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE----------------ADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS------------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc----------------hhHHHHHHHHHHH
Confidence 566777788888999999888877655544444333223322222222222 2222 22223356
Q ss_pred ccCchhhHHHHHHHHHHh
Q 038936 373 HAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~ 390 (476)
..++...|...+....++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 678888888887777654
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.32 E-value=4.7 Score=28.07 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..+-++.+-...+.|++....+.+.+|-+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555555566666666666666666666666666666655
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.98 E-value=22 Score=29.98 Aligned_cols=51 Identities=6% Similarity=0.044 Sum_probs=31.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhh---HHHHHHHHhccccHHHHHHHHHHHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFT---FAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
+..++++|+.-|.+..+......... ...++....+.+++++....+.++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34567788888888776532333333 3345556667777777777766654
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.90 E-value=6.7 Score=31.86 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 30 SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 30 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..++.+.+.++..+++...++-++.. +-|...-..+++.++-.|++++|...++-..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344566667777777777777666654 2355555667777777777777777666554
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.62 E-value=19 Score=28.84 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=52.7
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHhhhcCChhhHHHHHccCCCCChhh--HHHHHHHHHhcCChHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPY--SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS--WTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A 345 (476)
+...++++.|...++.........+ ..+--.|.......|.+++|+..++....++-.. ...-...+...|+.++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4455566666655554443211110 1111234566677788888888888777664443 44445668888888888
Q ss_pred HHHHHHHHHcC
Q 038936 346 LEYFELLLKSG 356 (476)
Q Consensus 346 ~~~~~~~~~~~ 356 (476)
..-|++.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 88888887765
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.48 E-value=11 Score=31.94 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=48.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-c---cchHHHHHHHHHH---
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-R---DVCSYNTMISGFT--- 103 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~---~~~~~~~l~~~~~--- 103 (476)
.-|+++...+++.+++.+.-+--+.--+....+...-|-.|.+.|.+..+.++-....+ | +...|.+++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34577777777777766554443321111223333344556677777777766665543 2 2234665555544
Q ss_pred --hcCCHHHHHHHHh
Q 038936 104 --KGGSLEQARNLFD 116 (476)
Q Consensus 104 --~~g~~~~a~~~~~ 116 (476)
=.|.+++|+++..
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 3688888887773
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.15 E-value=83 Score=35.86 Aligned_cols=63 Identities=6% Similarity=-0.024 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.++|...++...++|+++.|...+-.+....-+..+...+.-++..|+...|+.++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 567888888888999999999887776322234455566677899999999999999999743
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.02 E-value=12 Score=26.06 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
.++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+...-||...|-.|- -.+.|..++....+.++..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 44555555444433311 3333334456677889999999999888888888886653 34667777777777778777
Q ss_pred CCCCCHhhHH
Q 038936 255 GIRPNAFTFA 264 (476)
Q Consensus 255 ~~~~~~~~~~ 264 (476)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 55555554
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.61 E-value=45 Score=32.43 Aligned_cols=257 Identities=14% Similarity=0.112 Sum_probs=117.3
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHH--HH-HHcCCCHHHHHHHHHhhcc--------cchhhHHHHHHHHHhcC----
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALS--DM-YGKCGSINEARQIFDKMVD--------RDVVSWTAMIGRYFQEG---- 239 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~---- 239 (476)
...+..+++...+.|.. .......++ .+ +....+.+.|+.+|+...+ -++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 45566777776666622 222222222 22 3355677778777777643 12334455555555532
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 240 -RREEGFALFSELIKSGIRPNAFTFAGVLNACAD-HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 240 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
+.+.|..++.+..+.| .|+.......+.-... ..+...|.++|....+.|..+
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~------------------------ 361 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL------------------------ 361 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH------------------------
Confidence 4455666666666665 3443333222221111 234456666666655555221
Q ss_pred HccCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 318 FNGMPRPDLVSWTSLIAGYA----QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
.+-.+..+|. ...+...|..++++.-+.| .|....-...+..+.. ++++.+.-.+..+.+. +.
T Consensus 362 ----------A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~ 428 (552)
T KOG1550|consen 362 ----------AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GY 428 (552)
T ss_pred ----------HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hh
Confidence 1111111111 1234556666666666655 2221111112222233 4444444444433332 21
Q ss_pred CCChhhHHHHHHHH---Hh----cCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCC
Q 038936 394 TYTADHYACIVDLL---AR----SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH----GNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 394 ~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~ 462 (476)
......-..+.... .. ..+.+.+...+.+....-+......+...|... .+++.|...|.++-...
T Consensus 429 ~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--- 505 (552)
T KOG1550|consen 429 EVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--- 505 (552)
T ss_pred hHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---
Confidence 11110000010000 00 113444555555554444555555555554432 35777777777776655
Q ss_pred chhHHHHHHhh
Q 038936 463 PATYVTMANIY 473 (476)
Q Consensus 463 ~~~~~~l~~~y 473 (476)
+....+|++.+
T Consensus 506 ~~~~~nlg~~~ 516 (552)
T KOG1550|consen 506 AQALFNLGYMH 516 (552)
T ss_pred hHHHhhhhhHH
Confidence 66666666654
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.47 E-value=3.5 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=15.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4555666666666666666666543
No 358
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.33 E-value=5.5 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHHcCCCC
Q 038936 432 WASLLGGCRIHGNLDLAKRA--AEALFEIEPEN 462 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~~ 462 (476)
+-.++..+...|++++|+.+ |+-+..++|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 44566667788899999999 44777777754
No 359
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.89 E-value=32 Score=30.14 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc--c----ccHHHHHHHHHHHHHh
Q 038936 242 EEGFALFSELIKSGIRPNAFTFAGVLNACAD--H----AAEELGKQVHGYMTRI 289 (476)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~ 289 (476)
++...+++.|.+.|++-+..++......... . .....+..+++.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777776666543332222 1 2234566666666665
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.86 E-value=42 Score=31.47 Aligned_cols=93 Identities=10% Similarity=0.148 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 038936 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303 (476)
Q Consensus 224 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (476)
|....-+++..+..+..+.-...+..+|..-| .+...+..++++|... ..+.-..+++++.+..+ .+...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44455667788888888888888888888865 5677888888888877 56777788888777653 23333334444
Q ss_pred HhhhcCChhhHHHHHccC
Q 038936 304 MYSKCGNVENSKKVFNGM 321 (476)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~ 321 (476)
.|-+ ++.+.+..+|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 4444 5555555555443
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=82.63 E-value=8.6 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=15.2
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038936 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (476)
|+.+.|.+++..+. +.+..|..++.++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444444444444 444444444444444444
No 362
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.18 E-value=44 Score=31.23 Aligned_cols=103 Identities=12% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCcHHHH-HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH---HhcCChhhHHHHHhhC--CCCCcHHH
Q 038936 358 QPDHIVF-VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL---ARSGRFHEAEDVISKM--PMKPDKFL 431 (476)
Q Consensus 358 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~p~~~~ 431 (476)
.|+..|+ +.++.-+.+.|-..+|...+..+... .||+...|..+++.= ..+| ...+.+.++.+ ..-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 4555554 45566677888889999999888863 466777777776653 2333 77788888876 23368888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCc
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFE-IEPENP 463 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~ 463 (476)
|...+.--..+|..+.+-.++.++++ ++|...
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChhhh
Confidence 88888777788999999999988887 677543
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=80.99 E-value=16 Score=30.40 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=62.6
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc--cchHHHHHHHHHHh
Q 038936 29 YSSLIQFC--RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER--DVCSYNTMISGFTK 104 (476)
Q Consensus 29 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~ 104 (476)
|...++++ ...++++.|.+.+.. -.+.|+ ....++..+...|+.+.|+.+++.+..+ +......++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 44445444 455677777776622 122222 2224677777788888888888887653 22333444444 56
Q ss_pred cCCHHHHHHHHhcCCCCC-cchHHHHHHHHHhcC
Q 038936 105 GGSLEQARNLFDEMPQRD-NFSWTAMISGYVRYN 137 (476)
Q Consensus 105 ~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~ 137 (476)
++.+.+|...-+...++. ...+..++..+....
T Consensus 153 ~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred cCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 688888888887776642 446667776666444
No 364
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.83 E-value=8.6 Score=31.86 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhc-----CCCCCh-----------hhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKH-----GLTYTA-----------DHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
+...-..-+.+.|++.+|...|++++... .-.|.. ..+..+..++...|++-++++.-.++ ..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 44555666788999999999998765311 112322 22334556677778888888777775 44
Q ss_pred CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 426 KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 426 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.| ++..|-.-+.+....=+.++|..-+..+++++|.-.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 44 566776667777777788889999999999988543
No 365
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=80.28 E-value=2.4 Score=36.16 Aligned_cols=77 Identities=8% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 393 LTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWAS-LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 393 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
++.|+..|...+.-..+.|.+.+...++.++ ..+| |+..|-. ...-+...++++.+..++.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4455555665555555555666666666664 3344 4555533 22335566888888888888888888888776543
No 366
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=80.14 E-value=22 Score=32.71 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHhhCCCCCcHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 418 DVISKMPMKPDKF--LWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 418 ~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.+|...+..|... +++..+....+.+++.-|....++++++.|...
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3444456666443 566777777888999999999999999998654
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.99 E-value=4.1 Score=23.38 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 32 LIQFCRQNRALEEGKKVHSHLKSSG 56 (476)
Q Consensus 32 l~~~~~~~~~~~~a~~~~~~~~~~~ 56 (476)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777766543
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.89 E-value=19 Score=31.35 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCCCchhH
Q 038936 447 LAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~~~~~ 466 (476)
.|.+.+.++.+.+|.-|.-.
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 47778888889998655433
No 369
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.87 E-value=38 Score=29.03 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (476)
.++.....+...|.+.|++.+|+..|-.-.+++...+..++......|...+. |...-..++ .|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 45677788889999999999988877544443333332233222222222221 212222222 344
Q ss_pred ccccHHHHHHHHHHHHHh
Q 038936 272 DHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~ 289 (476)
..++...|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 566777777776665543
No 370
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.82 E-value=83 Score=32.95 Aligned_cols=248 Identities=13% Similarity=0.038 Sum_probs=142.4
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
.+++.+....+..+.+.+..+-...+...+.+++...-...+.++.+.+........+..+... +|...-...+..+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 5666666667777777776543344444445555555555555554443222222333334332 4554444455555
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHH-HHHHH
Q 038936 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK-ALEYF 349 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~ 349 (476)
...+..+ ...+.. .. -.++..+-...+.++.+.+..+ .+......++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~-~L---~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAA-AL---GDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHH-Hh---cCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 4432111 112222 21 1455555555666666554433 23334455777777777777777766543 34555
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcH
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDK 429 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 429 (476)
..+.. .++...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+. +++...+..+-..|+.
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCH
Confidence 55554 35677777788888888876655455555553 3455566667778877775 4566666666556787
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
..-...+.++...+....+...+.++++
T Consensus 853 ~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 853 DVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 7777778777776445567777877776
No 371
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.73 E-value=34 Score=28.46 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=77.1
Q ss_pred HhhhcCChhhHHHHHccCC--CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCchhh
Q 038936 304 MYSKCGNVENSKKVFNGMP--RPDL-VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF-VGVLTACTHAGLVDK 379 (476)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 379 (476)
-|....+++.|+..|.+.. .|++ .-|..-+.++.+.++++.+..--.+.++ +.||..-- ..+..+......++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3555667888888887766 3665 4466778888889999998888888777 56776543 334555677888999
Q ss_pred HHHHHHHHHH---hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC
Q 038936 380 GLQYFHSIKE---KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424 (476)
Q Consensus 380 a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 424 (476)
|+..++++.. ...+++...+...|-.+-...=...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 9999888743 22344445555555444333333445555555543
No 372
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.37 E-value=86 Score=32.85 Aligned_cols=255 Identities=11% Similarity=-0.019 Sum_probs=133.7
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCC
Q 038936 112 RNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191 (476)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (476)
..+.+.+..+|+.+....+..+.+.+..+ +...+..+.. .++...-...+.++...+........+..+++.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~--- 695 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS--- 695 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---
Confidence 34445555666666666666666666533 4344434432 223333334444443333221122233333322
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (476)
+|..+....+..+...+.. ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHH
Confidence 4555555555555543321 12234455566676666666666665544322 222222 345555555555665
Q ss_pred ccccHHH-HHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHH-HHccCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038936 272 DHAAEEL-GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK-VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 272 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
..+..+. +...+..+.+ .+++..-...+.++...|..+.+.. +...+..++..+-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5554332 2233333332 4566777777888888887655533 3444445666666667777777765 4566666
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..+.+ .|+...-...+.++.+.+....+...+..+..
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66665 45666666667777665444567777776664
No 373
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.34 E-value=25 Score=26.73 Aligned_cols=109 Identities=12% Similarity=0.187 Sum_probs=63.2
Q ss_pred HHHHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCChHHHHHHHHHccccc-chHHHHHHH
Q 038936 26 PSIYSSLIQFC---RQNRALEEGKKVHSHLKSSGFKPGVFI-SNCLLDMYAKCGNISDAQTLFDEMQERD-VCSYNTMIS 100 (476)
Q Consensus 26 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~ 100 (476)
..+.+.|+... ...++++++..+++.|.-. .|+... -..-...+...|++++|.++|+.+.+.. ...|..-+.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 34445555433 4578888888888888764 343322 2222344567888888888888887644 234444444
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 101 GFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 101 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
++|-.. .....|..........+...++..+.+.+.
T Consensus 85 A~CL~a--------------l~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 85 ALCLNA--------------KGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHh--------------cCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 443211 111235555555556677777777777766
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.48 E-value=8.7 Score=25.35 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=24.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhhHHHH
Q 038936 338 QNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQY 383 (476)
Q Consensus 338 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~ 383 (476)
..++.++|+..|+..++.-..|.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666554322221 2455555666666666555554
No 375
>PF13934 ELYS: Nuclear pore complex assembly
Probab=78.43 E-value=38 Score=28.26 Aligned_cols=122 Identities=11% Similarity=0.163 Sum_probs=56.2
Q ss_pred HHHHHHh--hhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 038936 299 SALVHMY--SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376 (476)
Q Consensus 299 ~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 376 (476)
..+++++ ...+++++|.+.+-.-.-+ +..-..++.++...|+.+.|+.+++...-.. .+......++.. ...+.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCC
Confidence 3444444 3345666666666433211 1112236666666777777777776543221 112222222222 44567
Q ss_pred hhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCc
Q 038936 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPD 428 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 428 (476)
+.+|..+-+...+. .....+..++..+.....-....+.+-.++..+.
T Consensus 156 v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 156 VTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEE 203 (226)
T ss_pred HHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChH
Confidence 77776665443321 1123455555555443322233333334444433
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.42 E-value=9.2 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
...++......|++++|...+++++++.
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3345555667799999999999998854
No 377
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=77.87 E-value=3.3 Score=35.34 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=34.8
Q ss_pred HhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 408 ARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
.+.|+.++|.++|+.+ ...| ++.....++...-.+++.-+|-+.|-+++.+.|.|+.++.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3566666666666653 3334 23344444444444566666667777777777766665544
No 378
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.58 E-value=4.3 Score=33.17 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=32.8
Q ss_pred HhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 408 ARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.+.|+.+.|.+++.++ ...| ....|-.+....-+.|+++.|.+.|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4455555566666554 3333 34456666665666677777777777777776654
No 379
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.56 E-value=5.5 Score=36.42 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=46.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV-LTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGR 412 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 412 (476)
.+...+.++.|+.++.+.++ ..||...|... ..++.+.+++..|+.=..++.+. .|+ ...|..-+.++.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHH
Confidence 34455566666666666666 34544433322 24555666666665555555532 222 2223333334444445
Q ss_pred hhhHHHHHhhC-CCCCcHHHHHHHH
Q 038936 413 FHEAEDVISKM-PMKPDKFLWASLL 436 (476)
Q Consensus 413 ~~~A~~~~~~~-~~~p~~~~~~~l~ 436 (476)
+.+|...|+.. ...|+..-....+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 55555555553 3445444443333
No 380
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.88 E-value=17 Score=27.52 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=41.3
Q ss_pred hhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 414 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+.|.++.+-|+ ........+......|++.-|.++.+.++..+|+|..+....+.+|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 45666666665 23334445556778899999999999999999999998888888774
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.62 E-value=11 Score=30.60 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=28.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 424 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
...|++.++..++.++...|+.++|.+..+++..+.|.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45677777777777777777777777777777777773
No 382
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.19 E-value=68 Score=29.98 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=27.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 435 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.+-.|...|++-.|.+.|.++....-.||..|..|+..+
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 444566777777787777777777767777777777654
No 383
>PRK10941 hypothetical protein; Provisional
Probab=75.94 E-value=47 Score=28.61 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
+.+-.+|.+.++++.|+.+.+.+... .|+. .-+.--.-.|.+.|.+..|..=++...+...-.|+.......+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 33444555566666666666655553 2332 2222233345555555555555555555444444444433333
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.58 E-value=12 Score=30.31 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=15.1
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 394 TYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.|++.+|..++.++...|+.++|.+...++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555555444443
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.44 E-value=53 Score=28.35 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
....|...|.+.+|.++.++.+..+ +.+...+..++..+...||--.+...++++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444666666666666666666543 3344555556666666666555555555443
No 386
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.36 E-value=34 Score=29.27 Aligned_cols=87 Identities=7% Similarity=-0.013 Sum_probs=41.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh-----h
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY-----S 306 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~ 306 (476)
|.++...++|.++..+.-+--+..-+-.......-|-.|.+.+.+..+.++-..-....-..+..-|..++..| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 45566666666666554444332112222333333444555555555555554444332222223344444333 3
Q ss_pred hcCChhhHHHHH
Q 038936 307 KCGNVENSKKVF 318 (476)
Q Consensus 307 ~~~~~~~a~~~~ 318 (476)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 456666666665
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.32 E-value=25 Score=24.56 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=40.4
Q ss_pred HHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH
Q 038936 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 364 (476)
..+...|+|++|..+.+...-||...|-++-. .+.|-.+++..-+.+|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45677888888888888887788887766633 45666666777777777665 4444443
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.62 E-value=1e+02 Score=31.28 Aligned_cols=56 Identities=16% Similarity=0.025 Sum_probs=35.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC----cHHHHHHHHHH--HhccCchhhHHHHHHH
Q 038936 331 SLIAGYAQNGMPDKALEYFELLLKSGTQP----DHIVFVGVLTA--CTHAGLVDKGLQYFHS 386 (476)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~~~~~~a~~~~~~ 386 (476)
.++......|+.++|...+.++......+ +..+-...+.. ....|+...+.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 56777888999999999988887653333 22222222222 3456777777766554
No 389
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.41 E-value=32 Score=28.73 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCcHH-----------HHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKS------GTQPDHI-----------VFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+.+...-.+-+.+.|++.+|..-|.+.+.. .-+|-.. .+..+-.++...|++-++++.-.++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555566688999999999999998742 1233222 22333455667899999999998888
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcH
Q 038936 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDK 429 (476)
Q Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 429 (476)
.. .+.++..|..-+.+.+..=+.++|..-|..+ ...|..
T Consensus 258 ~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 64 4667777777777777777788888888775 555543
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.34 E-value=26 Score=23.77 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHH
Q 038936 45 GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 45 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
+.++++.+.+.|+- +......+-..-...|+.+.|.+++..+. ..+..|..++.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45678888887753 33333333332235689999999999999 88889999999998888766554
No 391
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.47 E-value=6.4 Score=32.46 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=65.1
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChhhHHHHHhhC-CCCCcHH-HHHHHHHHHHhcCChH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHY-ACIVDLLARSGRFHEAEDVISKM-PMKPDKF-LWASLLGGCRIHGNLD 446 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~ 446 (476)
.|.....++.|+..|.+.+. +.|++.+| ..=+.++.+..+++.+..--.++ .+.|+.. ....++.+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 47777889999999988885 46766444 55677788888888887766554 6667655 5556666777888999
Q ss_pred HHHHHHHHHHHc
Q 038936 447 LAKRAAEALFEI 458 (476)
Q Consensus 447 ~A~~~~~~~~~~ 458 (476)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999663
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.24 E-value=37 Score=25.14 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 379 KGLQYFHSIKEKHGL-TYTADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
.+.++|+.|..+ ++ .-....|...+..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555556655554 33 2234445555666666666666666554
No 393
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.32 E-value=81 Score=28.66 Aligned_cols=57 Identities=7% Similarity=-0.059 Sum_probs=38.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh-ccccHHHHHHHHHHHHH
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA-DHAAEELGKQVHGYMTR 288 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 288 (476)
+..+.+.|.+..|.++.+-+...+..-|+.....+|..++ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5566777888888888888777764446666666666654 56667666666665544
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.18 E-value=68 Score=27.73 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHH
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
++.....|...|.+.+|.++.++.+... +.+...+-.++..+...|+--.+..-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444567888888888888888887765 5577777788888888888777776666553
No 395
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=71.14 E-value=41 Score=27.76 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=44.8
Q ss_pred CCchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH
Q 038936 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWT--SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364 (476)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 364 (476)
.+...-++.|+--|.-...+.+|-..|..-.. .+..+++ .-|......|+.++|++....+...-+..|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 34444455565555555555555555544331 2222222 2344566677777777666655433233333222
Q ss_pred HHHHH----HHhccCchhhHHHHHH
Q 038936 365 VGVLT----ACTHAGLVDKGLQYFH 385 (476)
Q Consensus 365 ~~l~~----~~~~~~~~~~a~~~~~ 385 (476)
-.+.. -..+.|..++|+++.+
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22221 1245555556655554
No 396
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.44 E-value=71 Score=27.62 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHh-----cCCCC
Q 038936 47 KVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD-----EMPQR 121 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-----~~~~~ 121 (476)
.+|-.=...|.+++..-...++......-...+....++- -.+...+.+|+++|+ +-.=.
T Consensus 98 DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~L---------------Vk~N~~Vv~aL~L~~~~~~~~~Ii~ 162 (292)
T PF13929_consen 98 DYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDL---------------VKRNKIVVEALKLYDGLNPDESIIF 162 (292)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHH---------------HHhhHHHHHHHHHhhccCcccceee
Q ss_pred CcchHHHHHHHHHh--cCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHc-CCCchHHHHH
Q 038936 122 DNFSWTAMISGYVR--YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRT-GFDSDEVVWS 198 (476)
Q Consensus 122 ~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 198 (476)
|+.+...+++.... ......-.++.+-+....+..++..+...++..++..+++....++++..... +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Q ss_pred HHHHHHHcCCCHHHHHHHHHh
Q 038936 199 ALSDMYGKCGSINEARQIFDK 219 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~ 219 (476)
.+++.-...|+..-..++.++
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhC
No 397
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=69.94 E-value=31 Score=28.69 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCC
Q 038936 429 KFLWASLLGGCR---------IHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 429 ~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
...|...+..+. ..++...|..+++++++++|+-
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 345666666663 3467889999999999999863
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.63 E-value=80 Score=27.92 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh------ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 038936 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACT------HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 415 (476)
++++..++++....+. |.+......|.++- ..-++.....+|+.+.. ..|++.+-..-..+..+..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 5778888888888874 77777776666552 23466666677766663 45665544444455666666777
Q ss_pred HHHHHhhCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 416 AEDVISKMPMKPD----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 416 A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
++..++.+...|. ...+..-...+.+.|+.++|...|++++.+.++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 7888877754432 2233444555778899999999999999998865543
No 399
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=69.51 E-value=72 Score=27.31 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-----HHHHHHHHHcc---cccchHHHHHH
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI-----SDAQTLFDEMQ---ERDVCSYNTMI 99 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~---~~~~~~~~~l~ 99 (476)
..+.+++.+.+.+....|..+.+.+... +-=....-.++......... ......+..+. +.- ..|-.++
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f-~~~l~Iv 160 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEF-PEYLEIV 160 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcC-cchHHHH
Confidence 4566777777888888888887776543 22223333333332222111 11112222211 111 2233444
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC-----CchHHHHHHHHHHhhhh
Q 038936 100 SGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-----NKFTLSSVLSAVSAIQC 174 (476)
Q Consensus 100 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~ 174 (476)
..|.|.=+...=..+|+.+..| ..+..-|.+.|+.+.|-.++--+....+... +...-..++......++
T Consensus 161 v~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~ 235 (258)
T PF07064_consen 161 VNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGD 235 (258)
T ss_pred HHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 4444444444444455554322 3566677777777777776666554232222 22333344444455555
Q ss_pred hhhHHHHHHHHH
Q 038936 175 LRLGKEIHGYIM 186 (476)
Q Consensus 175 ~~~a~~~~~~~~ 186 (476)
++.+.++.+-+.
T Consensus 236 w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 236 WDLCFELVRFLK 247 (258)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 400
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=68.91 E-value=99 Score=28.70 Aligned_cols=172 Identities=9% Similarity=-0.027 Sum_probs=92.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHH
Q 038936 33 IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 33 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
++++...| +.+...+....... ++...+.....++....+......+.+.+..++.......+.++...++.+-..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 56667777 56777666666433 233334433333332333333555556666677778888888888888887777
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCc
Q 038936 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192 (476)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 192 (476)
.+...+..+++......+.++...+. .+...+....+ .++...-...+.++...+..+.... +..+.. .+
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~----d~d~~Vra~A~raLG~l~~~~a~~~-L~~al~---d~ 190 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT----HEDALVRAAALRALGELPRRLSEST-LRLYLR---DS 190 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc----CCCHHHHHHHHHHHHhhccccchHH-HHHHHc---CC
Confidence 77777777777766666666665442 23333333332 3444444455555555444332222 222221 23
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFDK 219 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (476)
+..+-..-+.+....|. +.|...+..
T Consensus 191 ~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred CHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 44444445555555555 444444443
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.88 E-value=34 Score=23.66 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=29.4
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 336 YAQNGMPDKALEYFELLLKS----GTQPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
..+.|++.+|.+.+.+..+. +..+. ......+.......|++++|.+.+++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34667777776655554432 21110 112223444456667777777777766653
No 402
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=68.87 E-value=19 Score=24.38 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038936 105 GGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138 (476)
Q Consensus 105 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (476)
..+.+.+.++++.++.+++.+|..+..++...|.
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3344445555555555555555555555444443
No 403
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.74 E-value=68 Score=26.75 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=35.0
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 038936 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363 (476)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 363 (476)
..+|+-.-+|.+.....++..+. .+++++|.+++.++.+.|+.|....
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH
Confidence 34444555677777777776654 4688999999999999998876543
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.27 E-value=34 Score=25.10 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
..+-+..+..-++.|++.....-+++|.+.+|+..|..+|+-+..+.| +....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 334455555667788888888888888888999999988888877533 2222454443
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.21 E-value=28 Score=27.57 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=9.8
Q ss_pred HHhccCchhhHHHHHHHHH
Q 038936 370 ACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~ 388 (476)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3455555555555555544
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.07 E-value=1.3e+02 Score=29.81 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhh
Q 038936 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172 (476)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 172 (476)
+....-++|-.|.|.|++++|.++..... .........+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhC
Confidence 33444567888999999999999996665 44555556677777777654
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.69 E-value=80 Score=27.18 Aligned_cols=33 Identities=9% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 038936 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263 (476)
Q Consensus 231 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (476)
+.+-..+.+++++|+..+.++...|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 445566677777777777777777766665543
No 408
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.68 E-value=58 Score=26.93 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCChhhHHHHHhhC
Q 038936 401 ACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 401 ~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..++....+.|+.++|.+.|.++
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555555555555555554
No 409
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.33 E-value=75 Score=32.18 Aligned_cols=128 Identities=11% Similarity=0.055 Sum_probs=78.4
Q ss_pred hhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 6 CNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85 (476)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (476)
...|+++.|++.-..+ .++..|..|.....++|+.+-|+..|+..+. |..|--.|.-.|+.++-.++..
T Consensus 654 Le~gnle~ale~akkl--dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL--DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred hhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHH
Confidence 4556777777666555 3556788888888888888888888877655 3334445556677777776666
Q ss_pred HcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 86 EMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
....++..+-.... ..-.|+.++-.++++.....+. .|. .-...|.-++|.++.++...
T Consensus 723 iae~r~D~~~~~qn--alYl~dv~ervkIl~n~g~~~l-ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 723 IAEIRNDATGQFQN--ALYLGDVKERVKILENGGQLPL-AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHhhhhhHHHHHH--HHHhccHHHHHHHHHhcCcccH-HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 55433222111111 1235778888888777654321 111 11235777888888887765
No 410
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.00 E-value=71 Score=26.33 Aligned_cols=125 Identities=16% Similarity=0.107 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CCCCChhhHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH-GLTYTADHYACIVDLL 407 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 407 (476)
.+..++.+.+.+...+++...+.-.+.+ +.|..+-..++..++-.|++++|..-++-..+-. ...+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~- 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC- 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-
Confidence 4455677888888999998888877754 3455566777888899999999988776655320 112223444444432
Q ss_pred HhcCChhhHH-HHHhhC--C---CCCcHHHHHHHH-HHHH-hc-CChHHHHHHHHHHHHcCCCC
Q 038936 408 ARSGRFHEAE-DVISKM--P---MKPDKFLWASLL-GGCR-IH-GNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 408 ~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~-~~~~-~~-g~~~~A~~~~~~~~~~~p~~ 462 (476)
+.+. ++|.-- + ..|. ..|...+ .+.. ++ |.-+.+..+-+++++..|..
T Consensus 82 ------ea~R~evfag~~~Pgflg~p~-p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 ------EAARNEVFAGGAVPGFLGGPS-PEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred ------HHHHHHHhccCCCCCCcCCCC-HHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2222 233321 1 1122 3343333 3332 22 45555666777788866653
No 411
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=66.24 E-value=18 Score=19.96 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 431 LWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
+|..++..-...+++++|..-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5667777778889999999999998874
No 412
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.30 E-value=41 Score=31.91 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=29.2
Q ss_pred hhhhhhcCCHHHHHHHHHhcC--CCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 2 IDILCNQRRLKEALQILHQIS--HPSPSIY---SSLIQFCRQNRALEEGKKVHSHLKSS 55 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~--~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 55 (476)
+.-|.+.++.++|+.++..|. .-....| +.+.+.+.++.--.+....++.+...
T Consensus 415 ~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 415 ISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 455777788888888887775 2222223 33334444444344444455555444
No 413
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.69 E-value=1.7e+02 Score=29.84 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=29.8
Q ss_pred hhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 3 DILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHL 52 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 52 (476)
+.|...|+++.|++.-+.-+..-..++..-...+.+.+++..|-++|-++
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 35677777777777665442111223333345566777777777777766
No 414
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.13 E-value=1.1e+02 Score=32.70 Aligned_cols=93 Identities=9% Similarity=-0.060 Sum_probs=40.4
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChhhHHHHHhhCC-------C---CC
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHG------LTYTADHYACIVDLLARSGRFHEAEDVISKMP-------M---KP 427 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~---~p 427 (476)
|..+.-.+...+....|...+.++....+ .||...+...+...+...++++.|.+.++.+. . -+
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchh
Confidence 33333333344444455554444443221 12222333344444444455555555555431 0 02
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 428 DKFLWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
...++..+.......+++..|....+...
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 33344555555555555555555554443
No 415
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.03 E-value=27 Score=20.47 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (476)
....+.|-.+++..+++.|.+.|+..+...+..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3445778888999999999999988888888777653
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.66 E-value=44 Score=23.92 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455666666666666777766666655
No 417
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.43 E-value=31 Score=30.25 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=31.6
Q ss_pred HHHHHhcCChhhHHHHHhhC-C---CCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 404 VDLLARSGRFHEAEDVISKM-P---MKP--DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
+.-|.+..++..|...|.+- . ..| +...|..-..+-...|++..|+.-..+++.++|.+.-+|..
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 33444555555555555442 1 112 23344444444445555555555555555555555544443
No 418
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.36 E-value=62 Score=24.72 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=41.0
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
+.+.+.+.|++++..-. .++..+...++.-.|.++++++.+. +...+..|.+.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCC
Confidence 44556667776665433 3556666677778888888888875 555556665555566666664
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.81 E-value=1.4e+02 Score=27.87 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038936 228 WTAMIGRYFQ---EGRREEGFALFSELIKSGIRPNAFTFAGVLNACA 271 (476)
Q Consensus 228 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (476)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3344444444 4678888888888888886666544444444433
No 420
>PRK14700 recombination factor protein RarA; Provisional
Probab=61.81 E-value=1e+02 Score=26.88 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=44.4
Q ss_pred hHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc-----cHHHHHHHHHHHHHhCCCC
Q 038936 227 SWTAMIGRYFQ---EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA-----AEELGKQVHGYMTRIGYDP 293 (476)
Q Consensus 227 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~ 293 (476)
.+..+++++.+ ..+.+.|+-++.+|++.|-.|....-..++.++..-| -...|...++.....|.|-
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PE 199 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPE 199 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChH
Confidence 34445666654 4788999999999999997777666666666666555 2344555555555566443
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.79 E-value=2e+02 Score=29.72 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=24.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (476)
-.|+....++-++.+++.+....-.++....+.++..|.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 345566667777777777776655556665666665554
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.62 E-value=70 Score=29.41 Aligned_cols=85 Identities=11% Similarity=0.077 Sum_probs=58.5
Q ss_pred HHHHHHhcCChHHHHHHHHHccccc----------------chHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------
Q 038936 67 LLDMYAKCGNISDAQTLFDEMQERD----------------VCSYNTMISGFTKGGSLEQARNLFDEMPQR--------- 121 (476)
Q Consensus 67 l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------- 121 (476)
++..+....++.+-++..+.-..|+ -.+...|++..+-.||+..|+++++.+.-.
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~ 160 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVP 160 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCc
Confidence 4445555555655555555433221 124456778888899999999998887521
Q ss_pred --CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 122 --DNFSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 122 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
.+.++..+.-+|...+++.+|.+.|.....
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999999999999988764
No 423
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.52 E-value=46 Score=31.80 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=50.0
Q ss_pred hhcCChhhHHHHHccCCC--C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 306 SKCGNVENSKKVFNGMPR--P--DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
...|+...|...+..... | ..+....|.+...+.|-...|-.++.+.+... ...+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 345666666666655432 2 22334445555556666666666666665543 334456666777777777777777
Q ss_pred HHHHHHHHh
Q 038936 382 QYFHSIKEK 390 (476)
Q Consensus 382 ~~~~~~~~~ 390 (476)
+.|+.+.+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 777777653
No 424
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.38 E-value=1.1e+02 Score=26.64 Aligned_cols=116 Identities=17% Similarity=0.090 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA-------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR---- 409 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 409 (476)
+..+|..++++..+.|..+...+...+...+..- .+...|...+.++... + +......++..|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCC
Confidence 5566666666666665433212222233333221 1223566666666543 2 33334445544432
Q ss_pred cCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHHcCCC
Q 038936 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG---------------NLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 410 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~ 461 (476)
..+..+|...|++.-..-+......+. .+...| +...|...+...-...+.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 225566666666652222222222222 333333 666667777666665543
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.82 E-value=4.9 Score=35.01 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=37.8
Q ss_pred cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHH-HHHHHHHHHHhcCChHHHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKF-LWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 451 (476)
.|.++.|++.+...++. .++....|..-..++.+.++...|++-+... .+.||.. .|-.-..+....|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 44455555555555432 2333334444444455555555555554443 3333322 222222333344555555555
Q ss_pred HHHHHHcC
Q 038936 452 AEALFEIE 459 (476)
Q Consensus 452 ~~~~~~~~ 459 (476)
++.+.+++
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 55555433
No 426
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.67 E-value=1.8e+02 Score=28.86 Aligned_cols=423 Identities=14% Similarity=0.131 Sum_probs=203.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCh--hhHHHHHHHHH-hcCChHHHHHHHHHccc----ccc---
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKS-SGFKPGV--FISNCLLDMYA-KCGNISDAQTLFDEMQE----RDV--- 92 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~~--- 92 (476)
.+...|..+|.. |.++++.+.+ ..++|.. .++..+...+. ...+++.|+..+++... ++.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 344556655543 5566666663 3334432 34445555555 56788888888886542 111
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CcchH----HHH-HHHHHhcCChhHHHHHHHHHHhccC--CCCCc
Q 038936 93 --CSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSW----TAM-ISGYVRYNQPIEALDLYRMMQNFEN--SVSNK 159 (476)
Q Consensus 93 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~----~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 159 (476)
.....++..+.+.+... |.+.+++..+. ....| .-+ +..+...+++..|++.++.+..... ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12334566666666555 77777665432 11122 222 2222233788888888888876443 33333
Q ss_pred hHHHHHHHHHH--hhhhhhhHHHHHHHHHHcC---------CCchHHHHHHHHHHH--HcCCCHHHHHHHHHhhc-----
Q 038936 160 FTLSSVLSAVS--AIQCLRLGKEIHGYIMRTG---------FDSDEVVWSALSDMY--GKCGSINEARQIFDKMV----- 221 (476)
Q Consensus 160 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~----- 221 (476)
..+..++.+.. ..+..+.+.+..+.+.... ..|...++..+++.+ ...|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44444555443 2333455555555543221 234556666666544 35677666666655551
Q ss_pred --c-c-------c-----------------hh--hH---------HHHHH--HHHhcCChhHHHHHHHHHHH--------
Q 038936 222 --D-R-------D-----------------VV--SW---------TAMIG--RYFQEGRREEGFALFSELIK-------- 253 (476)
Q Consensus 222 --~-~-------~-----------------~~--~~---------~~l~~--~~~~~~~~~~a~~~~~~~~~-------- 253 (476)
+ + | .. .| .-++. .++..+..++|.+.+.+..+
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 1 1 0 00 01 11111 23344544455555544322
Q ss_pred cCCCCCH--------hhHHHHHH---------HHhccccHHHHHHHHHHHHHhCC-CCc-------hhhHHHHHHHhhhc
Q 038936 254 SGIRPNA--------FTFAGVLN---------ACADHAAEELGKQVHGYMTRIGY-DPY-------SFAASALVHMYSKC 308 (476)
Q Consensus 254 ~~~~~~~--------~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~ 308 (476)
....++. ..+...+. ..+-.+++..+...+..+.+..- .|+ +.++....-.+-..
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 1111111 11111111 12346788889999988876521 111 22222333345567
Q ss_pred CChhhHHHHHc--------cCCC--CC--hhhHHH--HHHHHHh--cCChHH--HHHHHHHHHHc-CCCCcH--HHHH-H
Q 038936 309 GNVENSKKVFN--------GMPR--PD--LVSWTS--LIAGYAQ--NGMPDK--ALEYFELLLKS-GTQPDH--IVFV-G 366 (476)
Q Consensus 309 ~~~~~a~~~~~--------~~~~--~~--~~~~~~--l~~~~~~--~~~~~~--A~~~~~~~~~~-~~~~~~--~~~~-~ 366 (476)
|+.+.|...|. ...+ +. ...+.. ++..+.. ..+.++ +.++++.+... .-.|+. .+.. .
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 99999999997 3332 22 222211 1112222 222233 66666655432 112222 2323 3
Q ss_pred HHHHHhc--cCchhhHHHHHHHHHHhc--CCCCChh---hHHHHHHHHHhcCChhhHHHHHhhC----CCCCc--HHHHH
Q 038936 367 VLTACTH--AGLVDKGLQYFHSIKEKH--GLTYTAD---HYACIVDLLARSGRFHEAEDVISKM----PMKPD--KFLWA 433 (476)
Q Consensus 367 l~~~~~~--~~~~~~a~~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~ 433 (476)
++.++.. .-...++...+.+..+.. ....+.. +++.+...+. .|+..+..+..... +..|| ...|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3333321 122235555555554432 1111111 1222333333 67777766555542 22333 34664
Q ss_pred HHH-----HHHHhcCChHHHHHHHHHHHH
Q 038936 434 SLL-----GGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 434 ~l~-----~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.+. ..+...|+.++|.....+.-.
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333 335667999999998887654
No 427
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.60 E-value=74 Score=24.32 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 12 KEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
.++.+.++..+-.-...-..++..+...++.-.|.++++.+.+.+...+..|--.-+..+...|
T Consensus 6 ~~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444444433333344455555555555666666666666554443333323333333333
No 428
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.54 E-value=19 Score=22.61 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=10.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLK 53 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~ 53 (476)
.+|.++...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455555555555444443
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.46 E-value=33 Score=29.10 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=9.1
Q ss_pred HHHHhccCchhhHHHHHHHH
Q 038936 368 LTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~ 387 (476)
...|...|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444
No 430
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.46 E-value=1.2e+02 Score=26.59 Aligned_cols=77 Identities=13% Similarity=0.255 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHh----------cCCHHHHHHHH
Q 038936 46 KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK----------GGSLEQARNLF 115 (476)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a~~~~ 115 (476)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+.... .-+..|+..||. .|++..-.+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3566667777777777777766666777777777787777766421 114445554442 46666666666
Q ss_pred hcCCCCCc
Q 038936 116 DEMPQRDN 123 (476)
Q Consensus 116 ~~~~~~~~ 123 (476)
+.-..-|.
T Consensus 342 Q~yp~tdi 349 (370)
T KOG4567|consen 342 QNYPTTDI 349 (370)
T ss_pred hcCCCCCH
Confidence 65544443
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.95 E-value=26 Score=21.94 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
-..++.++...|++++|.++++++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455566666666666666655554
No 432
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.75 E-value=1e+02 Score=25.56 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=48.7
Q ss_pred hccCchhhHHHHHHHHHHhc---CCCCC--hhhHHHHHHHHHhcCChh-------hHHHHHhhC------CCCC-c-HHH
Q 038936 372 THAGLVDKGLQYFHSIKEKH---GLTYT--ADHYACIVDLLARSGRFH-------EAEDVISKM------PMKP-D-KFL 431 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~------~~~p-~-~~~ 431 (476)
.....+++|++.|.-+.-.. +.+|. ...+..+++.|...|+.+ .|.+.|.+. +..+ + ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 33445555555444333211 22333 234556677777777744 344444443 1111 2 233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.-.++....+.|++++|.+.|.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445556678899999999999999844
No 433
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.50 E-value=21 Score=23.69 Aligned_cols=43 Identities=12% Similarity=-0.080 Sum_probs=20.8
Q ss_pred hcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc---CChHHHHHH
Q 038936 409 RSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH---GNLDLAKRA 451 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~ 451 (476)
...+.++|+..++++ +..+ ...-|..++..+... |++.+.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677666664 2222 223455555444333 444444443
No 434
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.81 E-value=1.5e+02 Score=28.38 Aligned_cols=43 Identities=28% Similarity=0.273 Sum_probs=21.2
Q ss_pred HHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHH
Q 038936 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 448 (476)
+...+.|.+++++|.-+--.++ +...+.-+-......|+.+.|
T Consensus 500 fFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La 542 (545)
T PF11768_consen 500 FFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALA 542 (545)
T ss_pred HHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhh
Confidence 3344556667777766665555 223333333223344555444
No 435
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.67 E-value=64 Score=22.99 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..++|..+.+.+...+. ....+-...+..+.++|++++|+..=.....||...|-.| +-.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 45666666666665553 3333444455667788888888444333345666666544 44577777888888877766
Q ss_pred cCCCCCHhhH
Q 038936 254 SGIRPNAFTF 263 (476)
Q Consensus 254 ~~~~~~~~~~ 263 (476)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444443
No 436
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.33 E-value=81 Score=24.06 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=30.2
Q ss_pred ChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 325 DLVSWTSLIAGYAQNGM-PDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
+...|.+++.+..+..- .--+..+|.-|.+.+.++++.-|..++.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44556666666644433 234556666666666677777777777766543
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.64 E-value=27 Score=27.67 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHhcCCCCC-hhhH-----HHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 038936 377 VDKGLQYFHSIKEKHGLTYT-ADHY-----ACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH 442 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (476)
.+.|+.+|+.+.+....+.+ .... ...+-.|.+.|.+++|.+++++.-..|+.......+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHc
Confidence 45666777766665322111 1111 123456788889999999888864466666555555554444
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.58 E-value=17 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.534 Sum_probs=24.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038936 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (476)
.-..|.-.+|..+|.+|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33456778899999999999988874 4555543
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=57.58 E-value=1.2e+02 Score=27.99 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhcc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVD-----------RDVVSWTAMIGRYFQEGRREEGFALFSELI 252 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 252 (476)
....|++.++-.||+..|+++++.+.- -.+.++.-+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888999999998887721 133456667778888899999998888764
No 440
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.57 E-value=1e+02 Score=30.20 Aligned_cols=239 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHH--Hccc-
Q 038936 14 ALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS-DAQTLFD--EMQE- 89 (476)
Q Consensus 14 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~--~~~~- 89 (476)
|....+..+......+..++.... .|++..+++....+.. |..+-..+...+...|-.+ .-..-+. .+.+
T Consensus 286 a~~~~~~~~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~ 359 (566)
T PF07575_consen 286 AQSCLEEFPPDSTNPLEQILLAIF-EGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREY 359 (566)
T ss_dssp HHHHHHHS---TTSTTHHHHHHHH-TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHH-ccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccccccccccccccHHHH
Q ss_pred ----------ccchHHHHHHHHHHhcC--CHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC
Q 038936 90 ----------RDVCSYNTMISGFTKGG--SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157 (476)
Q Consensus 90 ----------~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 157 (476)
.+...|..-+..+..++ .......++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-. ..-
T Consensus 360 ~ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~---~~~ 436 (566)
T PF07575_consen 360 LLLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ---RLL 436 (566)
T ss_dssp HHHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHH
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHh
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQ 237 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 237 (476)
...-|...+.-+.+.++...+..+...+.+.....+......+++......-....+..+-...+ ..-..+
T Consensus 437 ~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre---------F~~~~~ 507 (566)
T PF07575_consen 437 KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE---------FYELYD 507 (566)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH---------HHHHHh
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
.|++.+|.+.+-.+.+.+..|.......+..+.
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ---------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
No 441
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=57.23 E-value=40 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=13.2
Q ss_pred CHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038936 107 SLEQARNLFDEMPQRDNFSWTAMISGYV 134 (476)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 134 (476)
+.+++.++++.++.+++.+|..+..++.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 3444444444444444444444444443
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=57.17 E-value=84 Score=24.78 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 13 EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 13 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
.+.++++...-.....-..++..+...++.-.|.++++.+.+.+..++..|--.-+..+...|
T Consensus 12 ~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444322333333444444444455555666666655554444444333444444444
No 443
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.87 E-value=86 Score=23.92 Aligned_cols=89 Identities=10% Similarity=0.134 Sum_probs=47.9
Q ss_pred HHHcCCCchHH--HHHHHHHHHHcCCCHHHHHHHHHhhcc---------cchhhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 038936 185 IMRTGFDSDEV--VWSALSDMYGKCGSINEARQIFDKMVD---------RDVVSWTAMIGRYFQEGR-REEGFALFSELI 252 (476)
Q Consensus 185 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 252 (476)
|.+.+.+++.. ..+.++.-....+++...+.+++.+.. .+...|..++.+..+..- ---+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 33344444432 345666666666777777777766621 233445566655544433 223445555555
Q ss_pred HcCCCCCHhhHHHHHHHHhcc
Q 038936 253 KSGIRPNAFTFAGVLNACADH 273 (476)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~ 273 (476)
+.+.+++..-|..++.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 555566666666666655443
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.48 E-value=27 Score=30.17 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 366 (476)
-|+..|....+.||+++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888899999999999999988887655555543
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.44 E-value=83 Score=23.31 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 44 EGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFD 85 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (476)
.+.++|..|...|+... +..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555443322 2344444445555555555555544
No 446
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.35 E-value=44 Score=20.15 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=13.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+.-++.+.|++++|.+..+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33455566666666666666666
No 447
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.78 E-value=1.6e+02 Score=26.32 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChhhHHH
Q 038936 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR---SGRFHEAED 418 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 418 (476)
.+.-+.+++++++++ +-+......++..+.+..+.++..+-++++... .+-+...|...+..... .-.+++..+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 355677888888774 245556667777788888888888888888875 24456667766655443 223555555
Q ss_pred HHhhC-------CCC--------Cc--HH---HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 419 VISKM-------PMK--------PD--KF---LWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 419 ~~~~~-------~~~--------p~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+|.+. ... ++ .. .+..+...+...|-.+.|..+++.+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55442 111 11 11 23333334557799999999999999954
No 448
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.31 E-value=1.9e+02 Score=27.02 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=32.4
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 329 WTSLIAGYAQ---NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 329 ~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
...++.++.+ ..+++.|+.++..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344444444 5789999999999999998887666555555554444
No 449
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.14 E-value=78 Score=22.59 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038936 41 ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120 (476)
Q Consensus 41 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 120 (476)
..++|..+.+.+...+.. ....-..-+..+...|++++|+..=.....||...|.+|.. .+.|--+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456666666666665421 11111222334456666666633333333455555544433 355666666666665544
Q ss_pred C
Q 038936 121 R 121 (476)
Q Consensus 121 ~ 121 (476)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 450
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.02 E-value=18 Score=26.87 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=24.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (476)
....|.-..|-.+|++|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33456667799999999999988874 4555544
No 451
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=53.95 E-value=2.7e+02 Score=28.85 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
-.+.|.++.+---..|..++..-...+...|++-.+.+++.++.+..+-.++...+..++..+...|-
T Consensus 1215 ~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1215 YNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred HHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 34444444432112233444444445556777777777777777766667777777666666665553
No 452
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.86 E-value=1.8e+02 Score=26.57 Aligned_cols=80 Identities=18% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-hccCchhhHHHHHHHHHHh--cC---CCCChhhHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-THAGLVDKGLQYFHSIKEK--HG---LTYTADHYACIVD 405 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~~~~l~~ 405 (476)
.+..+.+.|-+..|.++.+-+...+..-|+.....+|+.| .+.++++--+++++..... .. .-|+ ...+.+-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--~a~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--FAFSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--HHHHHHH
Confidence 4566889999999999999999876554666666677766 5778888888887776541 01 1333 2344445
Q ss_pred HHHhcCCh
Q 038936 406 LLARSGRF 413 (476)
Q Consensus 406 ~~~~~g~~ 413 (476)
++...++.
T Consensus 187 A~~~l~~~ 194 (360)
T PF04910_consen 187 AYFRLEKE 194 (360)
T ss_pred HHHHhcCc
Confidence 55555555
No 453
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.97 E-value=45 Score=19.53 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=21.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 369 (476)
..+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777776666666655543
No 454
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.02 E-value=1.5e+02 Score=29.21 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHccccc------chHHHHHHHHHHhcCCHH
Q 038936 66 CLLDMYAKCGNISDAQTLFDEMQERD------VCSYNTMISGFTKGGSLE 109 (476)
Q Consensus 66 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 109 (476)
.|+.+|...|++..+.++++.....+ ...+|..+..+++.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 67778888888888888887766421 245666777777777654
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.01 E-value=86 Score=22.47 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 124 FSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
.-|..++..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888889999999999999988875
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.67 E-value=33 Score=29.66 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=30.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
..+.|+.++|..+|+.++.+.|+++.++...|..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f 159 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQF 159 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHH
Confidence 4567999999999999999999999998887754
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.44 E-value=53 Score=27.89 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhCC--------CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 400 YACIVDLLARSGRFHEAEDVISKMP--------MKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
...++..|.+.|++++|.++|+.+. ..+...+...+..++...|+.+..+...=+++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4467888999999999999999871 11344466677777778898888776655443
No 458
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.99 E-value=33 Score=29.68 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (476)
|+..|....+.||.++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 567777777778888888888887777755444444
No 459
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=50.37 E-value=38 Score=17.88 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 444 NLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 444 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+++.|..+|++.+...| ++..|..-+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46778888888888776 455555443
No 460
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.82 E-value=1e+02 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 392 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.+.|++.+...-.+++.+.+++..|.++|+-+
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45566666666666666666666666666655
No 461
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.26 E-value=35 Score=31.59 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=64.7
Q ss_pred HHHhhhcCChhhHHHHHccCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCch
Q 038936 302 VHMYSKCGNVENSKKVFNGMPR--PDL-VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLV 377 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 377 (476)
...+.+.+.++.|..++.++++ ||. ..|..-..++.+.+++..|+.=+.++++.. |.. ..|..=..+|...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 4456677788888888888875 433 344444578888888888888888887754 433 2344444556666777
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
.+|...|+.... +.|+..-....+.-
T Consensus 89 ~~A~~~l~~~~~---l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 89 KKALLDLEKVKK---LAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHhhh---cCcCcHHHHHHHHH
Confidence 777777776663 45655444444433
No 462
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=48.93 E-value=77 Score=21.56 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=14.0
Q ss_pred CChHHHHHHHHHcccccchHHHHHHHHHHh
Q 038936 75 GNISDAQTLFDEMQERDVCSYNTMISGFTK 104 (476)
Q Consensus 75 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (476)
...++|..+++.+...+..+|..+.+++-.
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 334445444444444444444444444443
No 463
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.29 E-value=1.1e+02 Score=22.48 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=45.2
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCh----------hhHHHHHHHHHhcCChhhHHHH-------HhhC-CCCCc-HHHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTA----------DHYACIVDLLARSGRFHEAEDV-------ISKM-PMKPD-KFLWAS 434 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~-------~~~~-~~~p~-~~~~~~ 434 (476)
.|.+++|..-++++.+.....|.. ..+..|..++.+.|++++++.- |++= ..+.| -..|-.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 455555555555554433333332 2344567778888888776544 3332 23333 334433
Q ss_pred H----HHHHHhcCChHHHHHHHHHHHH
Q 038936 435 L----LGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 435 l----~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
. ..++...|+.++|...|+.+-+
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3 3345677999999999987755
No 464
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.98 E-value=1.5e+02 Score=29.65 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCCC---chhhHHHHHHHhhhcCChhhHHHHHccCCC-CChh----------hHHHHHHHHHhcCChHHH
Q 038936 280 KQVHGYMTRIGYDP---YSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLV----------SWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 280 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~~A 345 (476)
..++.+|..+--.| .+.+...++-.|....+++..+++.+.+.+ ||.. .|...++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 34455555542233 234455566667777777777777666554 3211 222223333355777888
Q ss_pred HHHHHHHHHcC--CCCcHHHH-----HHH--HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hhh
Q 038936 346 LEYFELLLKSG--TQPDHIVF-----VGV--LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR-FHE 415 (476)
Q Consensus 346 ~~~~~~~~~~~--~~~~~~~~-----~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 415 (476)
+...-.|.+.. +.||..+. .-+ ...|...+..+.|.++|+++.+ +.|+...-..++..+...|. ++.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhccc
Confidence 88777776542 55665432 111 1224456677889999988874 57776555555666666664 332
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 416 AEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 416 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
..+ ++.++. ..+.+ +.+.|..++-..+|+-+.
T Consensus 340 s~E-lq~Igm-----kLn~L---lgrKG~leklq~YWdV~~ 371 (1226)
T KOG4279|consen 340 SLE-LQQIGM-----KLNSL---LGRKGALEKLQEYWDVAT 371 (1226)
T ss_pred hHH-HHHHHH-----HHHHH---hhccchHHHHHHHHhHHH
Confidence 222 222221 12222 345666666666665543
No 465
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.51 E-value=2.3e+02 Score=26.06 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcc------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVD------RDVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..+.-+...|..+|+++.|++.|.+..+ ..+..|-.+|..-+..|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788899999999999999988643 2344577777777888888877777766654
No 466
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.50 E-value=2.1e+02 Score=28.19 Aligned_cols=47 Identities=11% Similarity=-0.087 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCH
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSI 210 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 210 (476)
.++.+|...|++..+.++++.+.... -+.-...+|..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 55566666666666666666555432 122233445555555555543
No 467
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.38 E-value=2.7e+02 Score=26.93 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=36.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh-ccccHHHHHHHHHHHHH
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA-DHAAEELGKQVHGYMTR 288 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 288 (476)
+..+.+.|.+..|.++.+-+.+....-|+.....+|..|+ +..++.-.+++++....
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4455667777777777777776654445666666666554 55666666666665533
No 468
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.91 E-value=98 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHhh
Q 038936 400 YACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
...|+-.|.+.|+-+.|.+-|+.
T Consensus 75 HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 75 HAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHhhcCChHHHHHHHHH
Confidence 33444455555555555555443
No 469
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.60 E-value=1.3e+02 Score=22.77 Aligned_cols=66 Identities=6% Similarity=0.010 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 358 QPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.++..+-..+..++.+.. +..+.+.+++.+.++....-..+....|+.++.+.+++++++++++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 344444444555554443 455666666666642111122334455666677777777777776664
No 470
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.08 E-value=2.9e+02 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=17.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhh
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFT 262 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (476)
...++++.|..++.+|...|..|....
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 345777777777777777775555443
No 471
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=43.97 E-value=1.2e+02 Score=22.47 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
+...-+.+.|.++|+++++..|++-.++..+...
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 3344567889999999999999998888777654
No 472
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=42.99 E-value=2.8e+02 Score=25.83 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=126.6
Q ss_pred hhhhhhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038936 2 IDILCNQRRLKEALQILHQIS--HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 79 (476)
|+++...| +.++..+-... .++...+.....++....+......+.+.+ . .++...-.....++...+....
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L-~---d~~~~vr~aaa~ALg~i~~~~a 118 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVL-Q---AGPEGLCAGIQAALGWLGGRQA 118 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHh-c---CCCHHHHHHHHHHHhcCCchHH
Confidence 45566666 56666665553 455566555444444333333233333333 3 2455567788888888888777
Q ss_pred HHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc
Q 038936 80 AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159 (476)
Q Consensus 80 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 159 (476)
...+...+..+++......+.++...+. +-...+..-+..+|...-..-+.++...++. .+...+..+. ..+|.
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-~a~~~L~~al----~d~~~ 192 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRR-LSESTLRLYL----RDSDP 192 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-cchHHHHHHH----cCCCH
Confidence 7666666666777776666677665442 2223333334456777777777888777765 3334444443 23555
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHH-HHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhc
Q 038936 160 FTLSSVLSAVSAIQCLRLGKEIHGY-IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQE 238 (476)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (476)
..-...+.+....|. +.+...+.. ....| .| ....+....... ..+++...+..+.+... +-...+.++.+.
T Consensus 193 ~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g-~~---~~~~l~~~lal~-~~~~a~~~L~~ll~d~~-vr~~a~~AlG~l 265 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLAWGVCRRFQVLEG-GP---HRQRLLVLLAVA-GGPDAQAWLRELLQAAA-TRREALRAVGLV 265 (410)
T ss_pred HHHHHHHHHHHHcCC-HhHHHHHHHHHhccC-cc---HHHHHHHHHHhC-CchhHHHHHHHHhcChh-hHHHHHHHHHHc
Confidence 666666666677776 455554444 33233 22 222222222222 33366666655544322 444556666677
Q ss_pred CChhHHHHHHHHH
Q 038936 239 GRREEGFALFSEL 251 (476)
Q Consensus 239 ~~~~~a~~~~~~~ 251 (476)
|+...+-.+...|
T Consensus 266 g~p~av~~L~~~l 278 (410)
T TIGR02270 266 GDVEAAPWCLEAM 278 (410)
T ss_pred CCcchHHHHHHHh
Confidence 7766555555444
No 473
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.48 E-value=56 Score=28.94 Aligned_cols=115 Identities=8% Similarity=0.021 Sum_probs=66.9
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCCh---hhHHHHHHHHHhcCChHHHHHH
Q 038936 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL---VSWTSLIAGYAQNGMPDKALEY 348 (476)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 348 (476)
..|.++.|++.+...+..+ ++....|..-..++.+.+++..|++-+....+.|. ..|-.-..+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4555666666666666654 45555555556667777777777776666654222 2344444555667888888888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+....+.++.+....+ +=...-..+..++-...+++..+
T Consensus 205 l~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 205 LALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 8888887665543322 22333344444444444444443
No 474
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.40 E-value=2.5e+02 Score=24.73 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
++++.+.+.++.|.-..+.-+.-.+.+.=.+.+++.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444455554444444444444444555555555444
No 475
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.31 E-value=90 Score=19.60 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=6.2
Q ss_pred cCChhHHHHHHHHHH
Q 038936 39 NRALEEGKKVHSHLK 53 (476)
Q Consensus 39 ~~~~~~a~~~~~~~~ 53 (476)
.|++=+|-++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 476
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=41.27 E-value=1.5e+02 Score=22.02 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=38.0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLW-ASLLGGCRIHGNLDLAKRAAEAL 455 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~ 455 (476)
...+..+++-++.-.|..++|.+++...+--++.... ..++..|....+-++..++-++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445566777777777777887777777655554433 35666677666666655555443
No 477
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.88 E-value=90 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=14.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhccc
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVDR 223 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~~ 223 (476)
.++.-|...|+.++|...+.++.-|
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 4455566667777777777776444
No 478
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.73 E-value=4.7e+02 Score=27.74 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred hhhhhhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHh
Q 038936 2 IDILCNQRRLKEALQILHQIS-------HPSPSIYSSLIQFCRQ 38 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~ 38 (476)
|+.+..+++|.+|..+.++-. ..++..+-.=+..+.+
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~ 744 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVE 744 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHH
Confidence 456677788888888877652 4566655555554443
No 479
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.99 E-value=3e+02 Score=25.32 Aligned_cols=54 Identities=7% Similarity=0.103 Sum_probs=26.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHh--ccccHHHHHHHHHHHHHh
Q 038936 235 YFQEGRREEGFALFSELIKSGIRPNAF--TFAGVLNACA--DHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 289 (476)
+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556666666666666654 333333 2222223332 233455566666554443
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.24 E-value=1.6e+02 Score=21.86 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 380 GLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
..++|..|..+ ++-.. ...|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444433 33222 2234445555555555555555554
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.09 E-value=3.1e+02 Score=25.17 Aligned_cols=54 Identities=13% Similarity=-0.036 Sum_probs=36.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHH----HHHHHHHH--hccCchhhHHHHHHH
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIV----FVGVLTAC--THAGLVDKGLQYFHS 386 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~--~~~~~~~~a~~~~~~ 386 (476)
+..+.+.+++..|..+|+++....++|+... |..+..+| ...-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3356778899999999999998765555443 33333343 345677888888864
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.09 E-value=95 Score=22.36 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchh
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (476)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34445555566667777777777766666666666666666666543
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.05 E-value=1.8e+02 Score=22.31 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=35.2
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhcc-CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 351 LLLKSGTQPDHIVFVGVLTACTHA-GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
.+.+.|++++..-.. ++..+... +..-.|.++++.+.+. +...+..|.+.-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 345556665554333 33444433 4566777887777765 4455666666666677666654
No 484
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.01 E-value=8.5e+02 Score=30.20 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=10.1
Q ss_pred HHHHhcCCHHHHHHHHhcC
Q 038936 100 SGFTKGGSLEQARNLFDEM 118 (476)
Q Consensus 100 ~~~~~~g~~~~a~~~~~~~ 118 (476)
..|.+.|.+++|..++++.
T Consensus 2490 ~s~eQ~G~~e~AQ~lyeka 2508 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKA 2508 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHH
Confidence 3344555555555555544
No 485
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.51 E-value=1.1e+02 Score=19.90 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhc
Q 038936 8 QRRLKEALQILHQIS---HPSPSIYSSLIQFCRQN 39 (476)
Q Consensus 8 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 39 (476)
.=+.+.|..++..+. +.+|..||++...+.+.
T Consensus 10 mlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 10 MLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 334566666666664 67888888887766554
No 486
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.01 E-value=1.1e+02 Score=22.08 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 78 (476)
.++..+...+..-.|.++++.+.+.+..++..|.-..+..+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666677778888888887776666666555666666666433
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.69 E-value=1.1e+02 Score=26.15 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=33.6
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
..+.++++++.|.+..++. ...| |+.-+.--+..|.+.|-...|+.-++...+.-|+++.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3455666666666666553 3323 3434444444566666666666666666666665543
No 488
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.30 E-value=4e+02 Score=25.93 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=54.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-hccCchhhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-THAGLVDKGLQYFHSIKEKHG--LTYTADHYACIVDLLAR 409 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 409 (476)
+..+.+.|-+..|.++-+-+.+....-|+.....+|..| .+..+++--+++++....... .-|+...-.+++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 455667888888888888777765444666666677766 466777777777776643222 23444333445555554
Q ss_pred cCC---hhhHHHHHhhC
Q 038936 410 SGR---FHEAEDVISKM 423 (476)
Q Consensus 410 ~g~---~~~A~~~~~~~ 423 (476)
... -+.|...+.++
T Consensus 429 ~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQA 445 (665)
T ss_pred cCChhhHHHHHHHHHHH
Confidence 443 34455555554
No 489
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.13 E-value=1.5e+02 Score=20.86 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=11.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
|...|+.+.|.+-|+.-..+.|++.
T Consensus 82 ys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 82 YSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HhhcCChHHHHHHHHHhhhhCccch
Confidence 4444444444444444444444443
No 490
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.98 E-value=2.3e+02 Score=22.99 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=50.1
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 038936 111 ARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190 (476)
Q Consensus 111 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 190 (476)
|..+.++.+++....|..+...-++.-+.+++-+.+---. -..++..|.+..++.+..++++.|-+..+
T Consensus 95 a~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRi-----------GiS~m~~Yhk~~qW~KGrkvLd~l~el~i 163 (233)
T PF14669_consen 95 AEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRI-----------GISLMYSYHKTLQWSKGRKVLDKLHELQI 163 (233)
T ss_pred HHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555667667666666655555444332211 13445556666667777777666654332
Q ss_pred C--------------chHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038936 191 D--------------SDEVVWSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 191 ~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
. +--...|.....+.+.|.++.|..+++
T Consensus 164 ~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 164 HFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 1 112233444455555555555555554
No 491
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.90 E-value=3.4e+02 Score=25.02 Aligned_cols=141 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH--------HHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL--------TACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+...+-..+--+...+++.+|.++-+.....-..-|..++..+. .++...|+...-..++........+..+
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred hhh----HHHHHHHHHhcCChhhHHHHHhhC------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 397 ADH----YACIVDLLARSGRFHEAEDVISKM------PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 397 ~~~----~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
..+ .+.|.+.|...+.++.|.++..+. ...--..-.-.++..-.-.+++..|.+.+-+++...|++...
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~al 283 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAAL 283 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhh
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.63 E-value=1.1e+02 Score=19.42 Aligned_cols=51 Identities=8% Similarity=-0.028 Sum_probs=32.6
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 038936 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206 (476)
Q Consensus 155 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (476)
+.|....++.++...+...-.+.+...+....+.|. .+..+|.--++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345666677777777777777777777777777773 455555555555544
No 493
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.54 E-value=84 Score=22.90 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=21.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
++..+...+.+-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445556666666665555555555444444444444
No 494
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=36.05 E-value=3.1e+02 Score=24.31 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358 (476)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 358 (476)
..-+++.+..+++-+.......-++.+.+.+..+-+..++......+ ..-+.+.. +-.+.+.-++++.+. +.
T Consensus 19 ifPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~se-d~p~a~~e------kr~~Vla~lkeLe~e-v~ 90 (432)
T KOG2758|consen 19 IFPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSE-DMPNALVE------KRTEVLAELKELEEE-VA 90 (432)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccc-cchHHHHH------HHHHHHHHHHHHHHH-HH
Confidence 44455555556666666666667777777778888888877764211 00111110 011222222332221 11
Q ss_pred CcHHHHH--HHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHhh---CCCCCcHH--
Q 038936 359 PDHIVFV--GVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVISK---MPMKPDKF-- 430 (476)
Q Consensus 359 ~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~~~-- 430 (476)
|-...+. -++... ..-.+....++.+.+.+++.|+ ..+...++.....+|++..|-..+-. ....||..
T Consensus 91 piv~~le~Pd~~~~~---~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~l 167 (432)
T KOG2758|consen 91 PIVKVLENPDLIAAL---RSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYL 167 (432)
T ss_pred HHHHHHcCHHHHHHH---HhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhH
Confidence 1000000 011111 1122236677888888888886 45677788888999999999876533 34445543
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 431 --LWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 431 --~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
+|..++ +-.-..+|+.|.+-+-+..+
T Consensus 168 salwGKlA-SEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 168 SALWGKLA-SEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence 333332 22334789999988888777
No 495
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.22 E-value=4.9e+02 Score=26.32 Aligned_cols=463 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred ChhhhhhcCCHHHHHHHHHhcC------------CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCChhhHHHH
Q 038936 1 AIDILCNQRRLKEALQILHQIS------------HPSPSIYSSLIQFCRQNRA-LEEGKKVHSHLKSSGFKPGVFISNCL 67 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 67 (476)
+|+.+...+++..|+-+.-+.. .......+.++..+....+ -+--.+++..+.+.=.+-...-|..+
T Consensus 137 mi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~v 216 (929)
T KOG2062|consen 137 MIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSV 216 (929)
T ss_pred HHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeee
Q ss_pred HHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038936 68 LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYR 147 (476)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 147 (476)
.++|....+.+.+.++++++.+.+......-|....-..-.++-+....+....|...-..=+.....-=.=+...+++.
T Consensus 217 c~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l 296 (929)
T KOG2062|consen 217 CQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYL 296 (929)
T ss_pred eeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHH
Q ss_pred HHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHH----------------HHHcCCCHH
Q 038936 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD----------------MYGKCGSIN 211 (476)
Q Consensus 148 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~ 211 (476)
+..- .....|.......-... +..-...|.-+-..+...|-..|....+.+=. +....|+..
T Consensus 297 ~FL~-~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNWaKFtAtAsLGvIH~G~~~ 374 (929)
T KOG2062|consen 297 QFLL-RHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASLGVIHRGHEN 374 (929)
T ss_pred HHHH-HcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhhcchHhhhhhhhhcceeeccccc
Q ss_pred HHHHHHHhhcccchhh-------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHH
Q 038936 212 EARQIFDKMVDRDVVS-------WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHG 284 (476)
Q Consensus 212 ~a~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 284 (476)
++.+++..-...+... =..+.-+++..|..+...+.+.+.++. ..+...-.-..-++.-.|--..-.++++
T Consensus 375 ~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~--~~~e~v~hG~cLGlGLa~mGSa~~eiYe 452 (929)
T KOG2062|consen 375 QAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT--AENEVVRHGACLGLGLAGMGSANEEIYE 452 (929)
T ss_pred hHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHh--ccchhhhhhhhhhccchhcccccHHHHH
Q ss_pred HHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357 (476)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 357 (476)
.+.+.-...+..+-.+-.-+..-..--..-.+.++.|.. ....-=-.+.-++..-|+-++|..+.++|....
T Consensus 453 ~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk- 531 (929)
T KOG2062|consen 453 KLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK- 531 (929)
T ss_pred HHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC-
Q ss_pred CCcHHH--HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHH--H
Q 038936 358 QPDHIV--FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKF--L 431 (476)
Q Consensus 358 ~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~--~ 431 (476)
.|-... ...++.+|+-.|+..-..+++.-... ....|+.-+..++-++.-..+.+....+++-+ ...|.+. +
T Consensus 532 dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGa 609 (929)
T KOG2062|consen 532 DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGA 609 (929)
T ss_pred chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhH
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
-.+++-+|...|. .+|+.+++-+.. +|.+..-.-.|...
T Consensus 610 A~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~ 648 (929)
T KOG2062|consen 610 AMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIAL 648 (929)
T ss_pred HHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHH
No 496
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.70 E-value=1.7e+02 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=10.6
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 038936 129 MISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~~ 149 (476)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344445555555555555554
No 497
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.32 E-value=3.2e+02 Score=23.96 Aligned_cols=117 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHH
Q 038936 200 LSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 279 (476)
++....+.++..+..+.+..+ .....-...+......|++..|++++.+..+.--.-...+...=+..-...-...--
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~ 181 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIE 181 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHH
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (476)
..+=..+.+.-..-|+..|..+..+|...|+...+.+-+
T Consensus 182 ~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 182 EQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
No 498
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.09 E-value=2.8e+02 Score=23.17 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHH--HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhh
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP---DHIVF--VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 399 (476)
...-+|.|+--|.-...+.+|.+.|.+ +.|+.| +..++ ..-+......|+++.|++........ -+..|...
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNREL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhH
Confidence 344567777777777777777776654 344544 33333 23455567888888888888776544 34444433
Q ss_pred HHHHHH----HHHhcCChhhHHHHHhh
Q 038936 400 YACIVD----LLARSGRFHEAEDVISK 422 (476)
Q Consensus 400 ~~~l~~----~~~~~g~~~~A~~~~~~ 422 (476)
+..+.. -+.+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333322 24677888888887766
No 499
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=33.94 E-value=71 Score=16.28 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 448 AKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 448 A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.++...+++..+|.|-.+|...-++.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHH
Confidence 35677888999999999988876654
No 500
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.90 E-value=2.9e+02 Score=23.32 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH-hccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc-
Q 038936 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC-ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC- 308 (476)
Q Consensus 231 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 308 (476)
++..+-+.|+++++...++++...+...+..--+.+-.+| ...|....+.+++..+....-.........++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -----CChhhHHHHHccCCCCChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc---CCCCcHHH
Q 038936 309 -----GNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGM-----------------PDKALEYFELLLKS---GTQPDHIV 363 (476)
Q Consensus 309 -----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~~---~~~~~~~~ 363 (476)
.--.+++.+++...-|....-...+--+-..|+ .+.|...|++..+. .++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHh-----ccCchhhHHHHHHHHHHh
Q 038936 364 FVGVLTACT-----HAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 364 ~~~l~~~~~-----~~~~~~~a~~~~~~~~~~ 390 (476)
+..++--++ -.|+.++|.++-+++.+.
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Done!